BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043191
         (414 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 157/408 (38%), Positives = 222/408 (54%), Gaps = 47/408 (11%)

Query: 23  SSISENEPSYPTTTATLRLT------VKDRASLEQFLKERCKSSGEGDITSITPNEALCV 76
           SS+ E+ P  P +   + LT        DR  LE FLK  CKS        I  +EA  V
Sbjct: 27  SSLFEH-PHRPISPGPISLTKDTVSNAPDRGQLENFLKSNCKSG------HIKRSEAFSV 79

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           F+++++M+P+ PP++SFN L G +AK K Y  V+SL+KR++L GL PD  T NILINC+C
Sbjct: 80  FNHLIDMQPT-PPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYC 138

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
            + +V  G  VLG +LR   +P+ VTFTSL+K LC  SRI EA  L  K+   G   +V 
Sbjct: 139 NLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVV 198

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA----GS 252
           TY TL+NGLC TG+T++A+ L EEM NGNG FGV  +P+ + Y TIID LCK+     G 
Sbjct: 199 TYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGK 258

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
             FL                      +    + +  +I G+C   + + A+ LF  +   
Sbjct: 259 ELFLEMKGRG----------------ISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDE 302

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+ PNVVT+N+LI  LC  G+M+E  H      L K +   G  PD +TYN LI+ FC  
Sbjct: 303 GVHPNVVTFNVLIDALCKAGKMEEANH------LLKLMIQRGESPDTFTYNTLIDGFCLE 356

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           GR+     +F  +       DAV++  LI       +++E    +R++
Sbjct: 357 GRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREM 404



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/358 (30%), Positives = 170/358 (47%), Gaps = 47/358 (13%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +++ +   +  T  ++    LF  +   G+ P+  T+N+LI+  CK G++  
Sbjct: 267 RGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEE 326

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +L  +++   +PD  T+ +LI   C E RI +A  LF  +   G E D  +YN LIN
Sbjct: 327 ANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLIN 386

Query: 204 GLCRTGHTIVALNLFEEM----------------------------ANGNGEFGVV-CEP 234
           G C++G  + A  L+ EM                             N  GE  V    P
Sbjct: 387 GYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTP 446

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           ++ TY+ ++DGLCK     N L    M  F  L    F  P +++      F CLIDGLC
Sbjct: 447 ESCTYNILLDGLCKN----NHLS-EAMELFHYLENHDFQ-PSIQI------FNCLIDGLC 494

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K  K++IARELF  L   GL PNV+TY ++I GLC  GQ++  K       LF  +   G
Sbjct: 495 KARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKD------LFLGMEEKG 548

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
             P+L T+N L+  FC+   +     +   +    F+PDA T + ++ +L  +  +R+
Sbjct: 549 CAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYRE 606



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 6/169 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++NIL   L K  H    + LF  L      P    +N LI+  CK  ++     +
Sbjct: 446 PESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIAREL 505

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R+      P+ +T+T +I  LC   ++  A  LF  +   GC  ++ T+NTL+ G C+
Sbjct: 506 FNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQ 565

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
                  + L +EMA  +        PDA T S ++D L K+     +L
Sbjct: 566 NDEMQKVVELLQEMAEKD------FSPDASTISIVVDLLSKDEKYREYL 608


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 149/406 (36%), Positives = 209/406 (51%), Gaps = 39/406 (9%)

Query: 22  TSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYML 81
           TSS     P  P   A  R  +     L  FL+  CK+   G+IT+I   +A   FD M+
Sbjct: 33  TSSTHHPNPILPA--AFNREEISFHHPLSLFLR-NCKT---GNITAI---QAFHFFDLMM 83

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
              P  PP++SFN L G LAK  HY  + SL+  + L GL PD +T +IL NC C + RV
Sbjct: 84  RSHPI-PPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRV 142

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
           S     +  ILR  + P+ VT+T+LIK LC E RI EA  LF +++  GC  +  TY TL
Sbjct: 143 SEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTL 202

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-----------EA 250
           I GLC+TG+  +AL L +EM N   ++GV C+P  ITYS IIDGLCK           E 
Sbjct: 203 IKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEE 262

Query: 251 GSANFL------------GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
             A  +            GF C   +     +        VQ   + F  LID LCK  K
Sbjct: 263 MKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGK 322

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           +  A++L + + + G++PN++TYN LI G C  G ++  +       LF  + S GL PD
Sbjct: 323 VTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARE------LFLSMPSKGLEPD 376

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             +Y  LIN +CK  +V     ++  +L    +P+  T+ +L+K L
Sbjct: 377 EISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGL 422



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 170/358 (47%), Gaps = 38/358 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F+ M   +   P V S++ L         +D    LF  +   G+ PD  T+++
Sbjct: 254 DEAKELFEEM-KAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSV 312

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G+V+    +L  +++    P+ +T+ SLI   C    +  A  LF  +   G
Sbjct: 313 LIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKG 372

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            E D  +Y TLING C+T     A+NL+ EM        V   P+  TY T++ GL ++ 
Sbjct: 373 LEPDEISYTTLINGYCKTWKVKEAMNLYNEM------LQVGKSPNVTTYGTLLKGLFQKG 426

Query: 251 --GSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CL--------------------NF 286
             G A  L F  M ++        Y   +   C   CL                    N+
Sbjct: 427 KVGDAKKL-FGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENY 485

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
            CLIDGLCK  KL+ A ELF+ L + GL P+VVTYNI+I G C  GQ+D         +L
Sbjct: 486 SCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNAN------IL 539

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           F+++   G  PD+  YN L+  FC+  ++     +  +++    +P+A + T ++ +L
Sbjct: 540 FEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDML 597



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 131/324 (40%), Gaps = 66/324 (20%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  +    +   CK   EG +T     EA  + + M+  R   P + ++N L        
Sbjct: 306 DMVTFSVLIDTLCK---EGKVT-----EAKKLLEVMIQ-RGIVPNLITYNSLIDGFCMVG 356

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
             ++   LF  +   GL PD  +Y  LIN +CK  +V     +   +L+   +P+  T+ 
Sbjct: 357 DLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYG 416

Query: 165 SLIKDL-----------------------------------CAESRIMEAAALFTKLRVF 189
           +L+K L                                   C    + EA  LF +L+ +
Sbjct: 417 TLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSY 476

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK- 248
             +L++  Y+ LI+GLC+ G    A  LFE+++          +PD +TY+ +I G CK 
Sbjct: 477 NFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEG------LQPDVVTYNIMIHGFCKV 530

Query: 249 -EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
            +  +AN L F  M        +  Y  L          LC   G C+ +KL+   +L  
Sbjct: 531 GQVDNANIL-FEKMEENGCTPDIIAYNTL----------LC---GFCEGNKLEEVIKLLH 576

Query: 308 SLPRAGLMPNVVTYNILIRGLCND 331
            + +  + PN  +  I++  LC D
Sbjct: 577 KMVQKDVSPNAASCTIVVDMLCKD 600



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 6/164 (3%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           + I    L K       + LF  L       +   Y+ LI+  CK G++   + +  ++ 
Sbjct: 450 YGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLS 509

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           +    PD VT+  +I   C   ++  A  LF K+   GC  D+  YNTL+ G C      
Sbjct: 510 QEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLE 569

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
             + L  +M   +        P+A + + ++D LCK+     F+
Sbjct: 570 EVIKLLHKMVQKD------VSPNAASCTIVVDMLCKDEKYKKFV 607



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 49/102 (48%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++NI+     K    D    LF+++   G  PD   YN L+  FC+  ++     
Sbjct: 514 QPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIK 573

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           +L ++++   +P+A + T ++  LC + +  +   L  K  V
Sbjct: 574 LLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPKFPV 615


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 141/388 (36%), Positives = 202/388 (52%), Gaps = 35/388 (9%)

Query: 17  LSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCV 76
           LS  P  S + N  S   +   +      +  +  FL  +CK+       SI+  +A   
Sbjct: 35  LSSNPQISSANNPKSLHASPERISF----QHGIPMFL-HKCKTG------SISVTQAHQF 83

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           FD M+        + SFN L   LAK +HY  V SL+K+++L GL+PD  T NILINC C
Sbjct: 84  FDLMMR------SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLC 137

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
            + R++ G   +  I+R  + PD VTFT+LIK LC E RI+EA  LF +++  GC  +V 
Sbjct: 138 NVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVV 197

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           TY TLI GLC  G+  +AL   +EM N    +   C P+ I+YS IIDGLCK     N+ 
Sbjct: 198 TYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCK---VGNWE 254

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
              C+      N+M        VQ   + F  LID LCK  ++  A++L + + + G++P
Sbjct: 255 EAICL-----FNEMVDQ----GVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVP 305

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           N+ TY  LI+G C  G ++  K       LF  + S G  PD+ +YN+LIN +CK  +V 
Sbjct: 306 NLFTYTSLIKGFCLVGDLNSAKE------LFVSMPSKGYEPDVISYNMLINGYCKTLKVE 359

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               +F  +L     PD  T   L+K L
Sbjct: 360 EAMKLFNEMLHVGMWPDVKTSGVLLKAL 387



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 157/336 (46%), Gaps = 47/336 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V S++I+   L K  +++  + LF  +   G+ P+  T+++LI+  CK G+V     
Sbjct: 234 RPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKK 293

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +++    P+  T+TSLIK  C    +  A  LF  +   G E DV +YN LING C
Sbjct: 294 LLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYC 353

Query: 207 RTGHTIVALNLFEEM------------------------ANGNGEFGVVCEPDAITYSTI 242
           +T     A+ LF EM                         +   E   V +P A+     
Sbjct: 354 KTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLC 413

Query: 243 I-----DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           I     DGLCK     N   F  M  F   N++  Y   + ++     F CLIDGLCK  
Sbjct: 414 ICCIFLDGLCK-----NGYIFEAMKLF---NELESYNMKLDIE----TFGCLIDGLCKAG 461

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           KL+ A ELF+ L   G+ P+ + Y+ +I G C  GQ+D+        +LF+++   G  P
Sbjct: 462 KLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKAN------ILFQKMEENGCSP 515

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           DL TY+IL+  F +  ++     +  R++     PD
Sbjct: 516 DLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPD 551



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 144/348 (41%), Gaps = 60/348 (17%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY------------------------- 106
           EA+C+F+ M++ +  +P V +F++L   L K                             
Sbjct: 255 EAICLFNEMVD-QGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSL 313

Query: 107 ----------DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF 156
                     ++   LF  +   G  PD  +YN+LIN +CK  +V     +   +L    
Sbjct: 314 IKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGM 373

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
            PD  T   L+K L    ++ +A  LF  ++ +    D+      ++GLC+ G+   A+ 
Sbjct: 374 WPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMK 433

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           LF E+ + N +       D  T+  +IDGLCK AG       +    F  L +       
Sbjct: 434 LFNELESYNMKL------DIETFGCLIDGLCK-AGKLE----TAWELFEKLYEEG----- 477

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
             +Q   + +  +I G CK  ++  A  LFQ +   G  P+++TY+IL+RG        E
Sbjct: 478 --IQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFY------E 529

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           +   E V  L  R+    ++PD   Y I+ +  CK  +      +  R
Sbjct: 530 SNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQR 577



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 7/183 (3%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           G   ++   EA+ +F+ ML++    P V +  +L   L      D    LF+ +    + 
Sbjct: 351 GYCKTLKVEEAMKLFNEMLHV-GMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMP 409

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
            D     I ++  CK G +     +   +       D  TF  LI  LC   ++  A  L
Sbjct: 410 KDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWEL 469

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F KL   G + D   Y+++I+G C+ G    A  LF++M   NG     C PD ITYS +
Sbjct: 470 FEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEE-NG-----CSPDLITYSIL 523

Query: 243 IDG 245
           + G
Sbjct: 524 MRG 526


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 133/359 (37%), Positives = 193/359 (53%), Gaps = 30/359 (8%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           ++T   AL  F  M+   P+ P ++SFN L   LAK KHY  V SL+ ++ L+GL  DR 
Sbjct: 47  NVTATHALHFFHLMMRSTPT-PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRC 105

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           T NIL+NC C + R+  GF     ILR  ++P+ VT+ +LIK LC E RI EA  LF ++
Sbjct: 106 TLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM 165

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           +  GC  DV TY TLI GLC TG+  +AL L +EM N    + + C+P+ ITY+ I+DGL
Sbjct: 166 QKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGL 225

Query: 247 CK-----EAG----------------SANFL--GFSCMASFSALNKMAFYFPLVRVQCLC 283
           CK     EA                 S N L  GF C   +    ++        +Q   
Sbjct: 226 CKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDM 285

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           + F  LID LCK  K+  A++L   +  +G++P++VTYN LI G C  G ++  +     
Sbjct: 286 VTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARE---- 341

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             LF  + S G  PD+ +YN+LIN + K  +V     ++  +L     P+ +T+ SL+K
Sbjct: 342 --LFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLK 398



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 170/371 (45%), Gaps = 48/371 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F+ M   +   P + S+N L         ++    L   +   GL PD  T+N+
Sbjct: 232 DEAKQLFEEM-KTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNV 290

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G+V     +LG ++ S   PD VT+ SLI+  C    +  A  LF  +   G
Sbjct: 291 LIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKG 350

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM-------------------------ANGN 225
           CE DV +YN LING  +T     A+ L+ EM                          +  
Sbjct: 351 CEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAK 410

Query: 226 GEFGVV----CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
             F V+       ++ TY   +DGLCK     N   F  M  F+ L    F   +     
Sbjct: 411 KLFSVMKAHGIAENSYTYGIFLDGLCK-----NDCLFEAMKLFTELKSSNFKLEIE---- 461

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
              N  CLIDGLCK  KL+ A ELF+ L   G  PNVVTY I+I G C +GQ+D+     
Sbjct: 462 ---NLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKAN--- 515

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              +L +++ + G  PD+ TYN L+  F +  ++     +  R+     +PDA+T + ++
Sbjct: 516 ---VLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVV 572

Query: 402 KILEINSFFRQ 412
            +L  +  +++
Sbjct: 573 DMLSKDEKYQE 583



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 23/108 (21%), Positives = 47/108 (43%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L+     P V ++ I+     +    D    L +++   G  PD  TYN L+  F +  +
Sbjct: 486 LSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNK 545

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           +     +L R+ +   +PDA+T + ++  L  + +  E   L  +  +
Sbjct: 546 LEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPI 593


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 137/390 (35%), Positives = 202/390 (51%), Gaps = 28/390 (7%)

Query: 13  FADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNE 72
           F+   +  PT   S  + S      +L   + +R SL+  L     +  +G+ITS    +
Sbjct: 24  FSSLFTHSPTIPSSNPQISSANHPKSLH-ALSERISLQHGLPMFIHNCKKGNITS---TQ 79

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL  FD M+        + SFN+L G LAK KHY  V SL+K+++L GL P+ +T NILI
Sbjct: 80  ALQFFDLMMR------SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILI 133

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           NC C + RV  G   +  I+R  + PD VT+TSLIK LC E RI EA  LF +++  GC 
Sbjct: 134 NCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCW 193

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            +V TY TLI GLCRTG+  +AL L +EM NG   + + C+P+  +Y+ IID LCK    
Sbjct: 194 PNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCK---- 249

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                   +  +    ++        V+   + F  LID LCK   +  A++  +++   
Sbjct: 250 --------IGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLR 301

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G++P++ T+  LI G C  G +D  K       LF  + S G  PD+ +Y +LI  +CK 
Sbjct: 302 GIVPDLFTFTSLIEGFCLVGDLDSAKE------LFLSMPSKGYEPDVISYTVLIYGYCKT 355

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             V     ++  +L     PD  TF  L+K
Sbjct: 356 FNVEEAMKLYNEMLRVGKWPDMKTFCVLLK 385



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 157/342 (45%), Gaps = 49/342 (14%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + S+NI+   L K   +     LF  +   G+ PD  T++ LI+  CK G V     
Sbjct: 234 KPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKK 293

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L  ++     PD  TFTSLI+  C    +  A  LF  +   G E DV +Y  LI G C
Sbjct: 294 FLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYC 353

Query: 207 RTGHTIVALNLFEEM-------------------------ANGNGEFGVVCEPDAITY-- 239
           +T +   A+ L+ EM                          +    FGVV +P A+    
Sbjct: 354 KTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVV-KPHAVPKNL 412

Query: 240 ---STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
              S  +DGLCK     N   F  M  F   N++  Y   + ++    +F CLIDGLCK 
Sbjct: 413 YICSVFLDGLCK-----NGCLFEAMELF---NELKSYNMKLDIE----SFNCLIDGLCKA 460

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            KL+ A ELF+ L + GL P+VVTY I+I G C +GQ+D         +LF+ +   G  
Sbjct: 461 RKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNAN------ILFQMMEENGCT 514

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
           P+L TY+ L++ F K  ++     +  +++    +  A  +T
Sbjct: 515 PNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYT 556



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 28/215 (13%)

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           + ++N L+  L +  H     +L+++M            P+  T + +I+ LC       
Sbjct: 91  IISFNLLLGALAKIKHYSQVFSLYKKMHLAG------LSPNFFTLNILINCLCNVNRVRE 144

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
             G S MA          Y P V      + +  LI GLC   ++  A  LF  + + G 
Sbjct: 145 --GLSAMAGIMRRG----YIPDV------VTYTSLIKGLCMEHRISEATRLFIRMQKLGC 192

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF-----PDLYTYNILINCF 369
            PNVVTY  LI+GLC  G ++       + L  + LN T  +     P++++YNI+I+  
Sbjct: 193 WPNVVTYGTLIKGLCRTGNIN-----LALKLHQEMLNGTSPYAINCKPNIFSYNIIIDEL 247

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           CKIG+      +F  ++     PD VTF++LI  L
Sbjct: 248 CKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTL 282


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  224 bits (572), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 203/387 (52%), Gaps = 32/387 (8%)

Query: 18  SRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVF 77
           S  P  S + +  S   +       +  +  L  FL   CK+       +IT  +A   F
Sbjct: 32  SSNPHFSSAVHHKSLNVSPQNFNTPISFQQQLSMFL-HNCKTG------NITATQAFQFF 84

Query: 78  DYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK 137
             M+   P+ PP++SF  L   LAK KHY  V  L+ ++ L+G+ PD  T NIL+NC C 
Sbjct: 85  HLMMYSNPT-PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCN 143

Query: 138 MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFT 197
           + RV  G  V+  ILR  + PD VT+T+LIK LC E RI +AA LFT+++  GC  +  T
Sbjct: 144 VNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAIT 203

Query: 198 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
           Y TL+ GLCRTG+  +AL L +EM N +  +G+  +P  I+YS IID LCK+        
Sbjct: 204 YGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRRE----- 258

Query: 258 FSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                     ++    F  ++VQ +    +++  LI G C   K + A+ LF  +   G+
Sbjct: 259 ----------DEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGV 308

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            PNVVT+N+LI  LC +G++ E K       L + +   G+ P+L TYN LI  FC +G 
Sbjct: 309 QPNVVTFNVLIDVLCKEGKVIEAKD------LLEVMIQRGIVPNLLTYNSLIEGFCLVGD 362

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++S   +F  +      PD + +T LI
Sbjct: 363 LNSARELFVSMPSKGCEPDVICYTVLI 389



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 151/326 (46%), Gaps = 44/326 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F+ M  ++   P V S+  L         ++    LF  +   G+ P+  T+N+
Sbjct: 259 DEARDLFEEM-KVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNV 317

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G+V     +L  +++    P+ +T+ SLI+  C    +  A  LF  +   G
Sbjct: 318 LIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKG 377

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
           CE DV  Y  LING C+T     A+ L+      NG   V   PD  TY  ++ GL +  
Sbjct: 378 CEPDVICYTVLINGYCKTSKVEEAMKLY------NGMLQVGKRPDVKTYGALLTGLFQGG 431

Query: 249 EAGSAN--------------------FLGFSCMAS--FSAL---NKMAFYFPLVRVQCLC 283
           + G A                     FL   C     F A+   NK+  Y   + ++C  
Sbjct: 432 KVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIEC-- 489

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             F CLIDGLCK  KL+ A ELF+ LP+  L P+VVTYNI+I   C  GQ+ +       
Sbjct: 490 --FNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKAN----- 542

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCF 369
            +LF+++   G  PD  TY  LI  F
Sbjct: 543 -ILFQKMEKNGCTPDKITYATLIRGF 567



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 122/282 (43%), Gaps = 42/282 (14%)

Query: 136 CKMGRVS--HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
           CK G ++    F     ++ S  TP   +FT L+  L       +   L+ ++R+ G   
Sbjct: 70  CKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISP 129

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           D  T N L+N LC        L +      G    G +  PD +TY+T+I GLC E    
Sbjct: 130 DCCTLNILLNCLCNVNRVGEGLAVMA----GILRRGYI--PDIVTYTTLIKGLCME---- 179

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCL-----CLNFLCLIDGLCKISKLKIARELFQ- 307
                        ++K A  F   R+Q L      + +  L+ GLC+   + IA +L Q 
Sbjct: 180 -----------HRISKAALLF--TRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQE 226

Query: 308 -----SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
                SL      P V++Y+I+I  LC D + DE +       LF+ +   G+ P + +Y
Sbjct: 227 MLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARD------LFEEMKVQGMTPTVISY 280

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             LI+ FC  G+      +F  ++     P+ VTF  LI +L
Sbjct: 281 TSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVL 322



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 53/106 (50%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           +  FN L   L K    +T   LF++L    L PD  TYNI+I+ FC+ G+V    ++  
Sbjct: 487 IECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQ 546

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           ++ ++  TPD +T+ +LI+      ++ +   L   +      LDV
Sbjct: 547 KMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSLDV 592


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 131/339 (38%), Positives = 191/339 (56%), Gaps = 15/339 (4%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           ++T   AL  F  M+   P+ P ++SFN L   LAK KHY  V SL+ ++ L+GL  DR 
Sbjct: 47  NVTATHALHFFHLMMRSTPT-PSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRC 105

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           T NIL+NC C + R+  GF     ILR  ++P+ VT+ +LIK LC E RI EA  LF ++
Sbjct: 106 TLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM 165

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           +  GC  DV TY TLI GLC TG+  +AL L +EM N    + + C+P+ ITY+ I+DGL
Sbjct: 166 QKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGL 225

Query: 247 CK--EAGSANFLGFSCMASFSAL-NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           CK      A  L F  M +   + N+M        +Q   + F  LID LCK  K+  A+
Sbjct: 226 CKVGREDEAKQL-FEEMKTQGMIPNEMLDQ----GLQPDMVTFNVLIDTLCKEGKVIEAK 280

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           +L   +  +G++P++VTYN LI G C  G ++  +       LF  + S G  PD+ +YN
Sbjct: 281 KLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARE------LFVSMPSKGCEPDVISYN 334

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +LIN + K  +V     ++  +L     P+ +T+ SL+K
Sbjct: 335 VLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLK 373



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 167/365 (45%), Gaps = 57/365 (15%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP----------DRYTYNILINCFC 136
           +P V ++NI+   L K    D    LF+ +   G+ P          D  T+N+LI+  C
Sbjct: 212 KPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLC 271

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           K G+V     +LG ++ S   PD VT+ SLI+  C    +  A  LF  +   GCE DV 
Sbjct: 272 KEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVI 331

Query: 197 TYNTLINGLCRTGHTIVALNLFEEM-------------------------ANGNGEFGVV 231
           +YN LING  +T     A+ L+ EM                          +    F V+
Sbjct: 332 SYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVM 391

Query: 232 ----CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
                  ++ TY   +DGLCK     N   F  M  F+ L    F   +        N  
Sbjct: 392 KAHGIAENSYTYGIFLDGLCK-----NDCLFEAMKLFTELKSSNFKLEIE-------NLN 439

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
           CLIDGLCK  KL+ A ELF+ L   G  PNVVTY I+I G C +GQ+D+        +L 
Sbjct: 440 CLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKAN------VLI 493

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           +++ + G  PD+ TYN L+  F +  ++     +  R+     +PDA+T + ++ +L  +
Sbjct: 494 QKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKD 553

Query: 408 SFFRQ 412
             +++
Sbjct: 554 EKYQE 558



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 9/175 (5%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ +++ ML +   RP V +++ L   +      D    LF  +   G+  + YTY I 
Sbjct: 348 EAMKLYNEML-LVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIF 406

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK   +     +   +  S F  +      LI  LC   ++  A  LF KL   G 
Sbjct: 407 LDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGH 466

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDG 245
           E +V TY  +I+G CR G    A  L ++M ANG       C PD ITY+T++ G
Sbjct: 467 EPNVVTYTIMIHGFCREGQVDKANVLIQKMEANG-------CTPDIITYNTLMRG 514



 Score = 42.0 bits (97), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 45/102 (44%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++ I+     +    D    L +++   G  PD  TYN L+  F +  ++     
Sbjct: 467 EPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQ 526

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           +L R+ +   +PDA+T + ++  L  + +  E   L  +  +
Sbjct: 527 LLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPI 568


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 139/407 (34%), Positives = 214/407 (52%), Gaps = 37/407 (9%)

Query: 22  TSSISENEPSYPTTTATLRLTVKDRA------------SLEQFLKERCKSSGEGDITSIT 69
           +SS+  + P+ P++       V  ++            S +Q L     +   G+IT+I 
Sbjct: 20  SSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFNTPISFQQQLSMFLHNCKTGNITAI- 78

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
             +A   F  M+   P+ PP++SF  L   LAK KHY  V  L+ ++ L+G+ PD  T N
Sbjct: 79  --QAFQFFHLMMYSNPT-PPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLN 135

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           IL+NC C + RV  G  V+  ILR  + PD VT+T+LIK LC E RI +AA LFT+++  
Sbjct: 136 ILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKL 195

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK- 248
           GC  +  TY TL+ GLCRTG+  +AL L +EM N +  +G+  +P  I+YS IID LCK 
Sbjct: 196 GCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKD 255

Query: 249 ----------EAGSANFLGFSCMASFSALNKMA--FYFPLVR--VQCLCLNFLCLIDGLC 294
                     E      +  + ++  S + + A   +  +V   VQ   + F  LID LC
Sbjct: 256 RREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLC 315

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K  K+  A++L + + + G++PN++TYN LI G C  G ++  +       LF  + S G
Sbjct: 316 KEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARE------LFVSMPSKG 369

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             PD+  Y +LIN +CK  +V     ++  +L     PD  T+ +L+
Sbjct: 370 CEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALL 416



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 149/337 (44%), Gaps = 70/337 (20%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP----------------------- 123
           +P V S++I+   L K +  D    LF+ + + G+ P                       
Sbjct: 239 KPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQ 298

Query: 124 ----DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
               +  T+N+LI+  CK G+V     +L  +++    P+ +T+ SLI+  C    +  A
Sbjct: 299 GVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSA 358

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             LF  +   GCE DV  Y  LING C+T     A+ L+      NG   V   PD  TY
Sbjct: 359 RELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLY------NGMLQVGKRPDVKTY 412

Query: 240 STIIDGLCK--EAGSAN--------------------FLGFSCMAS--FSAL---NKMAF 272
             ++ GL +  + G A                     FL   C     F A+   NK+  
Sbjct: 413 GALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKS 472

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
           Y   + ++C    F CLIDGLCK  KL+ A ELF+ LP+  L P+VVTYNI+I   C  G
Sbjct: 473 YNIKLDIEC----FNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGG 528

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
           Q+ +        +LF+++   G  PD  TY  LI  F
Sbjct: 529 QVVKAN------ILFQKMEKNGCTPDKITYATLIRGF 559



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A + F  +  +   P + ++  L+ GL       + KHY  VF L+ ++  +G+ PD  T
Sbjct: 80  AFQFFHLMMYSNPTPPLSSFTHLLSGLA------KIKHYSQVFYLYNQMRLSGISPDCCT 133

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            NIL+NC C + RV  G  +   IL   + PD VT+T+LIK L
Sbjct: 134 LNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGL 176



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 53/106 (50%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           +  FN L   L K    +T   LF++L    L PD  TYNI+I+ FC+ G+V    ++  
Sbjct: 479 IECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQ 538

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           ++ ++  TPD +T+ +LI+      ++ +   L   +      LDV
Sbjct: 539 KMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRDVSLDV 584



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 6/120 (5%)

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
           +F  L+ GL KI        L+  +  +G+ P+  T NIL+  LCN  ++ E        
Sbjct: 98  SFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEG------L 151

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +   +   G  PD+ TY  LI   C   R+S   ++F R+     TP+A+T+ +L+K L
Sbjct: 152 AVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGL 211


>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/354 (39%), Positives = 196/354 (55%), Gaps = 25/354 (7%)

Query: 49  LEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDT 108
           LEQFL+  CKS   GD T    +EAL  F+ M++M+ + P ++ FN LFG LAK K Y  
Sbjct: 73  LEQFLEINCKS---GDFT---LHEALHFFNQMIHMQTT-PALSRFNNLFGALAKKKQYLH 125

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
           V+S+  R+N  GL  +  + NIL+NC C + RV  GFVV G ILR  + P+  TFT+L+K
Sbjct: 126 VISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVK 185

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
            LC E +I EA  +F  + VF C     T   LI+GLCRTG+T  AL L E M NGN +F
Sbjct: 186 GLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDF 245

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
           G+ C+P  ++YS IID LCK+        F     F  + +    FP V      + +  
Sbjct: 246 GINCKPTVVSYSCIIDSLCKDGLVERAKEF-----FVEMKEKGI-FPNV------VTYTS 293

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+ GLC  S+ + A+ LF  +   GL+P+VVT+++LI  LC  G++ E         LF 
Sbjct: 294 LLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASG------LFD 347

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            +    + P   TYNILI  +C  G V  G  IF  ++      DA +++ L+K
Sbjct: 348 LMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMK 401



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 145/338 (42%), Gaps = 28/338 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V S++ +   L K    +     F  +   G+FP+  TY  L++  C          
Sbjct: 250 KPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKR 309

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   ++     PD VTF+ LI  LC   ++ EA+ LF  +     E    TYN LI G C
Sbjct: 310 LFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYC 369

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCM--- 261
             G       +F  M N        C+ DA +YS ++   CK  E   A  L    M   
Sbjct: 370 LAGMVDEGKKIFLSMVNKR------CQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRG 423

Query: 262 -----ASFSALNKMAFYFPLVRVQCLCLN------FLCLIDGLCKISKLKIARELFQSLP 310
                 ++S +      F  ++ Q + L+      +   +DGLCK   +  A ++F  L 
Sbjct: 424 IQPTVITYSKVGDARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLE 483

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
                 NV  +N LI G+C   ++      E  + LF RL +  L PD+ TY I+I   C
Sbjct: 484 NCKFASNVAIFNSLINGMCRSEKL------EIAWELFNRLCNEALQPDVVTYTIMIYGLC 537

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
           K+G+    + +F  +      P+ VTF +L++ L +NS
Sbjct: 538 KVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNS 575



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 143/341 (41%), Gaps = 44/341 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   L     ++    LF  +   GL PD  T+++LI   CK+G+V     +
Sbjct: 286 PNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGL 345

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +++    P   T+  LI+  C    + E   +F  +    C+ D  +Y+ L+   C+
Sbjct: 346 FDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCK 405

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A+ L+ EM +     G+  +P  ITYS + D   K  G   F           L
Sbjct: 406 DSEVHGAMILYREMMDR----GI--QPTVITYSKVGDAR-KLFGEIQFQDM-------VL 451

Query: 268 NKMAFYFPLVRVQCLCLN------------------------FLCLIDGLCKISKLKIAR 303
           + +++    V +  LC N                        F  LI+G+C+  KL+IA 
Sbjct: 452 DSISYSIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAW 511

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           ELF  L    L P+VVTY I+I GLC  GQ    K Y+    LF  +   G  P++ T+N
Sbjct: 512 ELFNRLCNEALQPDVVTYTIMIYGLCKVGQ--PQKAYD----LFLEMEEKGCAPNVVTFN 565

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L+   C          +  ++     +PDA T   ++ IL
Sbjct: 566 TLMRGLCLNSERPKIVELLHKMAARKLSPDASTLLIVMDIL 606



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 6/157 (3%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N+    L K       L +F  L       +   +N LIN  C+  ++   + +  R+ 
Sbjct: 459 YNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLC 518

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                PD VT+T +I  LC   +  +A  LF ++   GC  +V T+NTL+ GLC      
Sbjct: 519 NEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERP 578

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
             + L  +MA           PDA T   ++D L K+
Sbjct: 579 KIVELLHKMAARK------LSPDASTLLIVMDILLKD 609



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 1/148 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL VF Y L        V  FN L   + +++  +    LF RL    L PD  TY I
Sbjct: 473 SEALDVF-YGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTI 531

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I   CK+G+    + +   +      P+ VTF +L++ LC  S   +   L  K+    
Sbjct: 532 MIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERPKIVELLHKMAARK 591

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLF 218
              D  T   +++ L +  +    LNL 
Sbjct: 592 LSPDASTLLIVMDILLKDENYHECLNLL 619


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 184/356 (51%), Gaps = 36/356 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++AL  F+ +L+M P  P +  F  L   +AK KHY TVLSL  +++  G+ P+ YT 
Sbjct: 45  TLDDALSSFNRLLHMHPP-PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTL 103

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NILIN FC + RV   F VL +IL+    PD  TFT+LI+ LC E +I EA  LF K+  
Sbjct: 104 NILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID 163

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + +V TY TLINGLC+ G+T  A+ L   M  GN      C+PD + Y++IID LCK
Sbjct: 164 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPDVVIYTSIIDSLCK 217

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQC-LC--------LN------------- 285
           +   +  F  FS M        +  Y  LV   C LC        LN             
Sbjct: 218 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI 277

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  ++D LCK  K+  A E+   + + G+ P+VVTY  L+ G C   +MDE         
Sbjct: 278 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEA------VK 331

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +F  +   G  PD+ +Y  LIN +CKI ++     +F  +    + PD  T+ +L+
Sbjct: 332 VFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLM 387



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 166/344 (48%), Gaps = 28/344 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M+    S P + ++  L   L     +  V +L  ++  + + PD   ++ +
Sbjct: 223 EAFNLFSQMVGQGIS-PDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTV 281

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G+V+    ++  +++    PD VT+T+L+   C +S + EA  +F  +   G 
Sbjct: 282 VDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGF 341

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV +Y TLING C+      A+ LFEEM            PD  TY+T++ GLC    
Sbjct: 342 APDVISYTTLINGYCKIHKIDKAMYLFEEMCRKE------WIPDTKTYNTLMYGLCHVGR 395

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCL-NFLCLIDGLCKISKLKIARELFQSLP 310
             + +               F+  + R Q   L  +  L+D LCK   L+ A  L +++ 
Sbjct: 396 LQDAIAL-------------FHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIE 442

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            + L P++  YNI+I G+C  G+++  +       LF  L+S GL P ++TYNI+I+  C
Sbjct: 443 ASNLNPDIQVYNIIIDGMCRAGELEAARD------LFSNLSSKGLHPSVWTYNIMIHGLC 496

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-ILEINSFFRQV 413
           K G ++    +F  +  +  +PD  T+ ++ +  L+ N   R +
Sbjct: 497 KRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAI 540



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 137/307 (44%), Gaps = 24/307 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  F+ +   L K         +   +   G+ PD  TY  L++  C    +     V
Sbjct: 273 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 332

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++R  F PD +++T+LI   C   +I +A  LF ++       D  TYNTL+ GLC 
Sbjct: 333 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCH 392

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A+ LF EM    G+      PD +TYS ++D LCK       +        S L
Sbjct: 393 VGRLQDAIALFHEMV-ARGQM-----PDLVTYSILLDSLCKNRHLEEAMALLKAIEASNL 446

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N      P ++V      +  +IDG+C+  +L+ AR+LF +L   GL P+V TYNI+I G
Sbjct: 447 N------PDIQV------YNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHG 494

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G ++E         LF  ++     PD  TYN +   F +         +   +L 
Sbjct: 495 LCKRGLLNEANK------LFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLA 548

Query: 388 SCFTPDA 394
             F+ D+
Sbjct: 549 RGFSADS 555



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 7/180 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ VFD M+  +   P V S+  L     K    D  + LF+ +      PD  TYN 
Sbjct: 327 DEAVKVFDMMVR-KGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNT 385

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+   C +GR+     +   ++     PD VT++ L+  LC    + EA AL   +    
Sbjct: 386 LMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASN 445

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+  YN +I+G+CR G    A +LF  +++          P   TY+ +I GLCK  
Sbjct: 446 LNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKG------LHPSVWTYNIMIHGLCKRG 499



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 104/245 (42%), Gaps = 23/245 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F+ M   +   P   ++N L   L         ++LF  +   G  PD  TY+I
Sbjct: 362 DKAMYLFEEMCR-KEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSI 420

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK   +     +L  I  S   PD   +  +I  +C    +  A  LF+ L   G
Sbjct: 421 LLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKG 480

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG----- 245
               V+TYN +I+GLC+ G    A  LF EM +GN      C PD  TY+TI  G     
Sbjct: 481 LHPSVWTYNIMIHGLCKRGLLNEANKLFMEM-DGND-----CSPDGCTYNTIARGFLQNN 534

Query: 246 -------LCKEAGSANFLGFSCMASFSAL---NKMAFYFPLVRVQCLCLNFL-CLIDGLC 294
                  L +E  +  F   SC    S L   ++  F F       L   F+ C +  L 
Sbjct: 535 ETLRAIQLLEEMLARGFSADSCFLMLSVLSEDDRRYFIFIPEGFDLLGWEFMRCKLKELA 594

Query: 295 KISKL 299
           KI ++
Sbjct: 595 KIGEV 599



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 24/227 (10%)

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           +A + F +L        +  +  L+  + +  H    L+L  +M +    FGV   P+  
Sbjct: 48  DALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDS----FGV--PPNVY 101

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           T + +I+  C      N +GF+    FS L K+      +  Q     F  LI GLC   
Sbjct: 102 TLNILINSFC----HLNRVGFA----FSVLAKIL----KLGHQPDPTTFTTLIRGLCVEG 149

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           K+  A  LF  +   G  PNVVTY  LI GLC  G             L + +      P
Sbjct: 150 KIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTS------AAIRLLRSMEQGNCQP 203

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           D+  Y  +I+  CK  +V+  F +F +++    +PD  T+TSL+  L
Sbjct: 204 DVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHAL 250


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 131/359 (36%), Positives = 185/359 (51%), Gaps = 36/359 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++AL  F+ +L+M P  P +  F  L   +AK KHY TVLSL  +++  G+ P+ YT 
Sbjct: 36  TLDDALSSFNRLLHMHPP-PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTL 94

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NILIN FC + RV   F VL +IL+    PD  TFT+LI+ LC E +I EA  LF K+  
Sbjct: 95  NILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID 154

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + +V TY TLINGLC+ G+T  A+ L   M  GN      C+PD + Y++IID LCK
Sbjct: 155 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPDVVIYTSIIDSLCK 208

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQC-LC--------LN------------- 285
           +   +  F  FS M        +  Y  LV   C LC        LN             
Sbjct: 209 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI 268

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  ++D LCK  K+  A E+   + + G+ P+VVTY  L+ G C   +MDE         
Sbjct: 269 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDE------AVK 322

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +F  +   G  PD+ +Y  LIN +CKI ++     +F  +    + PD  T+ +L+  L
Sbjct: 323 VFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGL 381



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 166/344 (48%), Gaps = 28/344 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M+    S P + ++  L   L     +  V +L  ++  + + PD   ++ +
Sbjct: 214 EAFNLFSQMVGQGIS-PDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTV 272

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G+V+    ++  +++    PD VT+T+L+   C +S + EA  +F  +   G 
Sbjct: 273 VDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGF 332

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV +Y TLING C+      A+ LFEEM            PD  TY+T++ GLC    
Sbjct: 333 APDVISYTTLINGYCKIHKIDKAMYLFEEMCRKE------WIPDTKTYNTLMHGLCHVGR 386

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCL-NFLCLIDGLCKISKLKIARELFQSLP 310
             + +               F+  + R Q   L  +  L+D LCK   L+ A  L +++ 
Sbjct: 387 LQDAIAL-------------FHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIE 433

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            + L P++  YNI+I G+C  G+++  +       LF  L+S GL P ++TYNI+I+  C
Sbjct: 434 ASNLNPDIQVYNIIIDGMCRAGELEAARD------LFSNLSSKGLHPSVWTYNIMIHGLC 487

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-ILEINSFFRQV 413
           K G ++    +F  +  +  +PD  T+ ++ +  L+ N   R +
Sbjct: 488 KRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAI 531



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 144/317 (45%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  F+ +   L K         +   +   G+ PD  TY  L++  C    +     V
Sbjct: 264 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 323

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++R  F PD +++T+LI   C   +I +A  LF ++       D  TYNTL++GLC 
Sbjct: 324 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCH 383

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A+ LF EM    G+      PD +TYS ++D LCK       +        S L
Sbjct: 384 VGRLQDAIALFHEMV-ARGQM-----PDLVTYSILLDSLCKNCHLEEAMALLKAIEASNL 437

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N      P ++V      +  +IDG+C+  +L+ AR+LF +L   GL P+V TYNI+I G
Sbjct: 438 N------PDIQV------YNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHG 485

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G ++E         LF  ++     PD  TYN +   F +         +   +L 
Sbjct: 486 LCKRGLLNEANK------LFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLA 539

Query: 388 SCFTPDAVTFTSLIKIL 404
             F+ D  T T L+++L
Sbjct: 540 RGFSADVSTTTLLVEML 556



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ VFD M+  +   P V S+  L     K    D  + LF+ +      PD  TYN 
Sbjct: 318 DEAVKVFDMMVR-KGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNT 376

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  C +GR+     +   ++     PD VT++ L+  LC    + EA AL   +    
Sbjct: 377 LMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASN 436

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+  YN +I+G+CR G    A +LF  +++          P   TY+ +I GLCK  
Sbjct: 437 LNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKG------LHPSVWTYNIMIHGLCKRG 490


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 125/362 (34%), Positives = 192/362 (53%), Gaps = 36/362 (9%)

Query: 66  TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
           T+I+ ++AL  F  M+ M P RP V  F    G  AK K Y TV+SL  +++L G+  + 
Sbjct: 65  TNISIDDALASFYRMVRMNP-RPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNV 123

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           Y+ N+LINC C++  V     +LG++ +    P A TF +LI  LC E +I EA  LF +
Sbjct: 124 YSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNE 183

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +   G E +V +YNT+INGLC+TG+T +A+++F++M   NG     C+PD +TY+TIID 
Sbjct: 184 MVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQ-NG-----CKPDVVTYNTIIDS 237

Query: 246 LCKE----------------AGSANFLGFSCMAS----FSALNKMAFYFPLV---RVQCL 282
           LCK+                    N   ++CM         LN+    F  +    V   
Sbjct: 238 LCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPD 297

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
            +    L+DGLCK   +  AR +F+++   G+ PN+ TYN L+ G C    M+E K    
Sbjct: 298 TVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKK--- 354

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
              +F+ +   G  P +++YNILIN FCK  R+     +   +      PD VT+++L++
Sbjct: 355 ---VFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQ 411

Query: 403 IL 404
            L
Sbjct: 412 GL 413



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 158/342 (46%), Gaps = 25/342 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  +F  M+  R   P   +  IL   L K         +F+ +   G+ P+  TYN 
Sbjct: 280 NEATRLFKEMVG-RDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNA 338

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +C    ++    V   ++R    P   ++  LI   C   R+ EA +L  ++    
Sbjct: 339 LMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKA 398

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  TY+TL+ GLC+ G    ALN+F+EM +    +G++  P+ +TYS ++DG CK  
Sbjct: 399 LNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCS----YGLL--PNLVTYSILLDGFCKHG 452

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L            K+       +++   ++   LI+G+    KL++A+ELF  L 
Sbjct: 453 HLDEAL------------KLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLF 500

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P + TY ++I+GL  +G  DE       + LF+++   G  P+  +YN++I  F 
Sbjct: 501 ADGIRPTIRTYTVMIKGLLKEGLSDE------AYDLFRKMEDDGFLPNSCSYNVMIQGFL 554

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           +    S+   +   ++   F+ +  TF  L+ +   +    Q
Sbjct: 555 QNQDSSTAIRLIDEMVGKRFSANLSTFQMLLDLESQDEIISQ 596


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/369 (35%), Positives = 187/369 (50%), Gaps = 36/369 (9%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++AL  F+ ML+M P  P    FN L   +AKTK Y TV SL  +++  G+ PD YT 
Sbjct: 49  TLDDALSSFNRMLHMHPP-PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 107

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NILIN FC + R+   F VL +IL+    PD  TFT+LI+ LC E +I +A  LF K+  
Sbjct: 108 NILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 167

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + +V TY TLINGLC+ G+T  A+ L   M  GN      C+PD + Y++IID LCK
Sbjct: 168 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGN------CQPDVVVYTSIIDSLCK 221

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQC-LC--------LN------------- 285
           +   +  F  FS M        +  Y  L+   C LC        LN             
Sbjct: 222 DRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVI 281

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  ++D LCK  K+  A ++   +   G+ PNVVTYN L+ G C   +MDE         
Sbjct: 282 FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDE------AVK 335

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
           +F  +   G  P++ +YN LIN +CKI R+     +F  +      P+ VT+ +L+    
Sbjct: 336 VFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCH 395

Query: 406 INSFFRQVA 414
           +      +A
Sbjct: 396 VGRLQDAIA 404



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 164/375 (43%), Gaps = 69/375 (18%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +  +   L K +      +LF ++   G+ PD +TY  LI+  C +    H   
Sbjct: 206 QPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTT 265

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L +++ S   PD V F++++  LC E +I EA  +   + + G E +V TYN L++G C
Sbjct: 266 LLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHC 325

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG----------------LCKEA 250
                  A+ +F+ M + NG       P+ I+Y+T+I+G                +C++ 
Sbjct: 326 LQSEMDEAVKVFDTMVH-NGY-----APNVISYNTLINGYCKIQRMDKATYLFEEMCQKE 379

Query: 251 GSANFLGFSCMA----------SFSALNKMAFY--FPLVRVQCLCLNFLC---------- 288
              N + ++ +           + +  ++M  +   P +    + L++LC          
Sbjct: 380 LIPNTVTYNTLMHXCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMA 439

Query: 289 -------------------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                              +IDG+C+  +L+ AR++F +L   GL PNV TY I+I GLC
Sbjct: 440 LLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLC 499

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
             G +DE         LF  ++  G  PD  TYN +     +         +   +L   
Sbjct: 500 RRGLLDEANK------LFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARG 553

Query: 390 FTPDAVTFTSLIKIL 404
           F+ D  T T L+++L
Sbjct: 554 FSADVSTTTLLVEML 568



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F  M+      P + ++ IL   L K  H D  ++L K +  + + PD   Y I
Sbjct: 400 QDAIALFHEMV-AHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTI 458

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  C+ G +     +   +      P+  T+T +I  LC    + EA  LF ++   G
Sbjct: 459 VIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNG 518

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           C  D  TYNT+  GL +    + A+ L +EM
Sbjct: 519 CSPDGCTYNTITQGLLQNKEALRAIQLLQEM 549



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 16/127 (12%)

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           R     LNF  L D L   +++     L    P     P+ V +N L+  +       +T
Sbjct: 39  RFHSKSLNFNTLDDALSSFNRM-----LHMHPP-----PSTVDFNRLLTSIA------KT 82

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           K Y TVF L  +++S G+ PD+YT NILIN FC + R+   F +  +IL     PD  TF
Sbjct: 83  KQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATF 142

Query: 398 TSLIKIL 404
           T+LI+ L
Sbjct: 143 TTLIRGL 149


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  207 bits (527), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 132/359 (36%), Positives = 184/359 (51%), Gaps = 36/359 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++AL  F+ ML+M P  P    FN L   +AKTK Y TV SL  +++  G+ PD YT 
Sbjct: 47  TLDDALSSFNRMLHMHPP-PSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 105

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NILIN FC + R    F VL +IL+    PD  TFT+LI+ LC E +I +A  LF K+  
Sbjct: 106 NILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 165

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + +V TY TLINGLC+ G+T  A+ L   M  GN      C+PD + Y++IID LCK
Sbjct: 166 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGN------CQPDVVVYTSIIDSLCK 219

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQC-LC--------LN------------- 285
           +   +  F  FS M        +  Y  L+   C LC        LN             
Sbjct: 220 DRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVI 279

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  ++D LCK  K+  A ++   +   G+ PNVVTYN L+ G C   +MDE         
Sbjct: 280 FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDE------AVK 333

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +F  +   G  P++ +YN LIN +CKI R+     +F  +      P+ VT+ +L+  L
Sbjct: 334 VFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGL 392



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 161/370 (43%), Gaps = 58/370 (15%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +  +   L K +      +LF ++   G+ PD +TY  LI+  C +    H   
Sbjct: 204 QPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTT 263

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L +++ S   PD V F++++  LC E +I EA  +   + + G E +V TYN L++G C
Sbjct: 264 LLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHC 323

Query: 207 RTGHTIVALNLFEEMA-NG------------NGE------------FGVVCE----PDAI 237
                  A+ +F+ M  NG            NG             F  +C+    P+ +
Sbjct: 324 LQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTV 383

Query: 238 TYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLN----------- 285
           TY+T++ GLC      + +  F  M +   +  +A Y  L+   C   +           
Sbjct: 384 TYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTI 443

Query: 286 -----------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
                      +  +IDG+C+  +L+ AR++F +L   GL PNV TY I+I GLC  G +
Sbjct: 444 EGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLL 503

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           DE         LF  ++  G  PD  TYN +     +         +   +L   F+ D 
Sbjct: 504 DEANK------LFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADV 557

Query: 395 VTFTSLIKIL 404
            T T L+++L
Sbjct: 558 STTTLLVEML 567



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 119/274 (43%), Gaps = 34/274 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ VFD M++     P V S+N L     K +  D    LF+ +    L P+  TYN 
Sbjct: 329 DEAVKVFDTMVH-NGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNT 387

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  C +GR+     +   ++     PD  T+  L+  LC +S + EA AL   +    
Sbjct: 388 LMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSN 447

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D+  Y  +I+G+CR G    A ++F  +++          P+  TY+ +I+GLC+  
Sbjct: 448 MDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKG------LRPNVRTYTIMINGLCRRG 501

Query: 251 --GSANFL-----GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
               AN L     G  C       N +                     GL +  +   A 
Sbjct: 502 LLDEANKLFMEMDGNGCSPDGCTYNTIT-------------------QGLLQNKEALRAI 542

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           +L Q +   G   +V T  +L+  LC+D ++D++
Sbjct: 543 QLLQEMLARGFSADVSTTTLLVEMLCDD-KLDQS 575



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 16/127 (12%)

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           R     LNF  L D L   +++     L    P     P+ V +N L+  +       +T
Sbjct: 37  RFHSKSLNFNTLDDALSSFNRM-----LHMHPP-----PSTVDFNRLLTSIA------KT 80

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           K Y TVF L  +++S G+ PD+YT NILIN FC + R    F +  +IL     PD  TF
Sbjct: 81  KQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATF 140

Query: 398 TSLIKIL 404
           T+LI+ L
Sbjct: 141 TTLIRGL 147


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/407 (32%), Positives = 198/407 (48%), Gaps = 75/407 (18%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           KER +S     +  I  ++A+ +F  ML  RP  P V  FN LFG LA+TK YD VL+L 
Sbjct: 59  KERLRSG----LVDIKKDDAVALFQSMLRSRP-LPTVIDFNRLFGLLARTKQYDLVLALC 113

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           K++ L G+  D YT NI+INCFC+  ++   F  +G+I +  + P+ VTF +L+  LC E
Sbjct: 114 KQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLE 173

Query: 174 SRIMEAAA-----------------------------------LFTKLRVFGCELDVFTY 198
            R+ EA                                     L  ++   GC+ + FTY
Sbjct: 174 GRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTY 233

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
             ++N +C++G+T  AL+L  +M +         +P  +TY+ IID LCK+    + L F
Sbjct: 234 GPILNRMCKSGNTASALDLLRKMEHRK------IKPHVVTYTIIIDNLCKDGRLDDALSF 287

Query: 259 -----------------SCMASFSALNKMAFYFPLVR------VQCLCLNFLCLIDGLCK 295
                            S + SF +  +      L+R      +    + F  LID L K
Sbjct: 288 FSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVK 347

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
             KL  A++L+  +   G+ PN +TYN LI GLCND ++DE      + +      S G 
Sbjct: 348 EGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMV------SKGC 401

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            PD++TYNILIN FCK  +V  G  +F ++       D VT+++LI+
Sbjct: 402 DPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQ 448



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 160/351 (45%), Gaps = 47/351 (13%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R  +P V ++ I+   L K    D  LS F  +   G+  + +TYN LI  FC  GR
Sbjct: 256 MEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGR 315

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
              G  +L  ++    TP+ VTF++LI  L  E ++ EA  L+ ++   G E +  TYN+
Sbjct: 316 WDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNS 375

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI GLC       A  + + M +        C+PD  TY+ +I+G CK     +      
Sbjct: 376 LIYGLCNDKRLDEANQMMDLMVSKG------CDPDIWTYNILINGFCKAKQVDD------ 423

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                   KM+    +       + +  LI G C+  KL +A+++FQ +   G+ P ++T
Sbjct: 424 --GMRLFRKMSLRGMIADT----VTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMT 477

Query: 321 YNILIRGLCNDGQMDE-----------------------------TKHYETVFLLFKRLN 351
           Y IL+ GLC++G+++E                                 +  + LF  L 
Sbjct: 478 YAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLP 537

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           S G+  D+ +YNI+++  CK   +S    +F ++    + PD  T+ +LI+
Sbjct: 538 SKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIR 588



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 1/146 (0%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VF  M++ +   P + ++ IL   L      +  L +  +++   +  D   YNI+I+  
Sbjct: 462 VFQEMVS-QGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGM 520

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C   +V   + +   +       D  ++  ++  LC  S + EA ALF K++  G E D 
Sbjct: 521 CNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDG 580

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEM 221
            TYNTLI    R      ++ L EEM
Sbjct: 581 CTYNTLIRAHLRGNDITTSVQLIEEM 606



 Score = 45.1 bits (105), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 1/134 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL + D M   +     +  +NI+   +      D   SLF  L   G+  D  +YNI+
Sbjct: 493 EALGILDQMHKCK-MELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIM 551

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK   +S    +  ++    + PD  T+ +LI+     + I  +  L  +++  G 
Sbjct: 552 LSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGF 611

Query: 192 ELDVFTYNTLINGL 205
             D  T   +++ L
Sbjct: 612 SSDASTVKIVMDML 625


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  204 bits (519), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 128/355 (36%), Positives = 189/355 (53%), Gaps = 37/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY-DTVLSLFKRLNLTGLFPDRYTYN 129
           ++AL  F++ML+ +P RP +  FN L   + K +HY D V+SL K++ L GL PD YT +
Sbjct: 103 DDALAYFNHMLHRKP-RPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLH 161

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +LINCF ++ RV  GF VL +I++       VTF +LI  LC   +  +A  LF  +   
Sbjct: 162 MLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVAR 221

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G + DV TY T+INGLC+ G T+ A  LF +M    GE G  C+PD +TYSTIID LCK+
Sbjct: 222 GYQPDVHTYTTIINGLCKIGETVAAAGLFRKM----GEAG--CQPDVVTYSTIIDSLCKD 275

Query: 250 AGSANFLG-FSCMASFSALNKMAFYFPLVRVQC---------------LCLN-------F 286
                 L  FS M +      +  Y  L++  C               + LN       F
Sbjct: 276 RRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTF 335

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LI+  CK   +  AR + +++   G+ PNVVTY+ L+ G     ++ E +       L
Sbjct: 336 SLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARK------L 389

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           F  + + G  PD+++YNILIN +CK  R+     +F  ++    TPD V++ +LI
Sbjct: 390 FDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLI 444



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 161/349 (46%), Gaps = 36/349 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEAL +F YM   +   P + ++N L   L     +    ++   +    + P+  T+++
Sbjct: 279 NEALDIFSYM-KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 337

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN FCK G V     VL  +      P+ VT++SL+     ++ ++EA  LF  +   G
Sbjct: 338 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKG 397

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--- 247
           C+ DVF+YN LING C+      A  LF EM +          PD ++Y+T+IDGLC   
Sbjct: 398 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQG------LTPDIVSYNTLIDGLCQLG 451

Query: 248 --KEAGS--ANFL---GFSCMASFSAL-------NKMAFYFPLVR-VQCLCLN-----FL 287
             +EA     N L       + ++S L         +A  F L R +Q   L      + 
Sbjct: 452 RLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYN 511

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LID +CK   LK AR+LF  L   GL PNV  Y  +I GLC +G +DE          F
Sbjct: 512 ILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEA------LEAF 565

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
           + +   G  P+ ++YN++I  F +    S    + G +    F  D  T
Sbjct: 566 RNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 102/225 (45%), Gaps = 33/225 (14%)

Query: 195 VFTYNTLINGLCRTGH---TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           +  +N L++ + +  H    +++L+   E+A           PD  T   +I+  C    
Sbjct: 121 IIQFNKLLSAIVKMRHYHDAVISLSKQMELAG--------LSPDTYTLHMLIN--CFFQL 170

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
               LGFS +A    L           +Q   + F  LI+GLCK+ K   A ELF  +  
Sbjct: 171 QRVDLGFSVLAKIIKLG----------LQLTIVTFNTLINGLCKVGKFGQAVELFDDMVA 220

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL--LFKRLNSTGLFPDLYTYNILINCF 369
            G  P+V TY  +I GLC  G        ETV    LF+++   G  PD+ TY+ +I+  
Sbjct: 221 RGYQPDVHTYTTIINGLCKIG--------ETVAAAGLFRKMGEAGCQPDVVTYSTIIDSL 272

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
           CK  RV+    IF  +     +P+  T+ SLI+ L   S +R+ +
Sbjct: 273 CKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREAS 317


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 177/341 (51%), Gaps = 43/341 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           PP+  FN + G L K KHY T +SLFK++ + G+ PD +T NILINCFC +G+++  F V
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG+IL+  + P+ +T  +L+K LC +  + ++     K+   G ++D  +Y TL+NGLC+
Sbjct: 68  LGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCK 127

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE------------------ 249
            G T  AL L   + + +        P+ + Y+TIIDGLCK+                  
Sbjct: 128 IGETRSALKLLRMIEDRS------TRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGI 181

Query: 250 -----AGSANFLGF----SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
                  S    GF      M +F  LN+M     L  +      +  L+D LCK  K+K
Sbjct: 182 FPNVITYSTLIYGFCLAGQLMEAFGLLNEMI----LKNINPNVYTYTILMDALCKEGKVK 237

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A+ L   + + G+ PNVV+YN L+ G C  G++   K       +F  +   G+ P++Y
Sbjct: 238 EAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQ------MFHTMVQKGVNPNVY 291

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +YNI+I+  CK  RV     +   +L     P+ VT++SLI
Sbjct: 292 SYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLI 332



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 162/360 (45%), Gaps = 59/360 (16%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  R +RP V  +N +   L K K  +    L+  ++  G+FP+  TY+ LI  FC  G
Sbjct: 140 MIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAG 199

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++   F +L  ++     P+  T+T L+  LC E ++ EA  L   +   G + +V +YN
Sbjct: 200 QLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYN 259

Query: 200 TLINGLCRTG---------HTIV--------------------------ALNLFEEMANG 224
           TL++G C  G         HT+V                          A+NL  E+ + 
Sbjct: 260 TLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHK 319

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL 284
           N        P+ +TYS++IDG CK       LG    ++   L +M        V    +
Sbjct: 320 N------MVPNTVTYSSLIDGFCK-------LG-RITSALDLLKEMYHRGQPADV----V 361

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  L+D LCK   L  A  LF  +   G+ PN  TY  LI GLC  G+      ++   
Sbjct: 362 TYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGR------HKNAQ 415

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            LF+ L   G   +++TYN++I+  CK G +     +  ++  +   PDAVTF  +I+ L
Sbjct: 416 KLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSL 475



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 146/318 (45%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   + N L   L         L    ++   G   D+ +Y  L+N  CK+G       
Sbjct: 77  QPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALK 136

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  I      P+ V + ++I  LC +  + EA  L++++   G   +V TY+TLI G C
Sbjct: 137 LLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFC 196

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G  + A  L  EM   N        P+  TY+ ++D LCKE           + +   
Sbjct: 197 LAGQLMEAFGLLNEMILKN------INPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEG 250

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                       V+   +++  L+DG C I +++ A+++F ++ + G+ PNV +YNI+I 
Sbjct: 251 ------------VKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMID 298

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC   ++DE  +      L + +    + P+  TY+ LI+ FCK+GR++S   +   + 
Sbjct: 299 RLCKSKRVDEAMN------LLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMY 352

Query: 387 PSCFTPDAVTFTSLIKIL 404
                 D VT+TSL+  L
Sbjct: 353 HRGQPADVVTYTSLLDAL 370



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 142/298 (47%), Gaps = 31/298 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + + M+ ++   P V ++ IL   L K        +L   +   G+ P+  +YN L
Sbjct: 203 EAFGLLNEMI-LKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTL 261

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ +C +G V +   +   +++    P+  ++  +I  LC   R+ EA  L  ++     
Sbjct: 262 MDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNM 321

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  TY++LI+G C+ G    AL+L +EM +  G+       D +TY++++D LCK   
Sbjct: 322 VPNTVTYSSLIDGFCKLGRITSALDLLKEMYH-RGQ-----PADVVTYTSLLDALCKNQN 375

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
                          L+K    F  ++ + +  N   +  LIDGLCK  + K A++LFQ 
Sbjct: 376 ---------------LDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQH 420

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           L   G   NV TYN++I GLC +G +DE         +  ++   G  PD  T+ I+I
Sbjct: 421 LLVKGCRINVWTYNVMISGLCKEGMLDEA------LAMKSKMEENGCIPDAVTFEIII 472



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 119/248 (47%), Gaps = 24/248 (9%)

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
           TP  + F  ++  L        A +LF +++V G E D+FT N LIN  C  G    +  
Sbjct: 7   TPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFT 66

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           +  ++        +  +P+ IT +T++ GLC +      L F           +A  F +
Sbjct: 67  VLGKI------LKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKV-------VAQGFQM 113

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
            +V     ++  L++GLCKI + + A +L + +      PNVV YN +I GLC D  ++E
Sbjct: 114 DQV-----SYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNE 168

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                  + L+  +++ G+FP++ TY+ LI  FC  G++   F +   ++     P+  T
Sbjct: 169 A------YDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYT 222

Query: 397 FTSLIKIL 404
           +T L+  L
Sbjct: 223 YTILMDAL 230



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 62/138 (44%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R     V ++  L   L K ++ D   +LF ++   G+ P++YTY  LI+  CK GR  +
Sbjct: 354 RGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKN 413

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   +L      +  T+  +I  LC E  + EA A+ +K+   GC  D  T+  +I 
Sbjct: 414 AQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIR 473

Query: 204 GLCRTGHTIVALNLFEEM 221
            L        A  L  EM
Sbjct: 474 SLFEKDQNDKAEKLLHEM 491



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
           LVR     + F  ++  L K+     A  LF+ +   G+ P++ T NILI   C+ GQM 
Sbjct: 3   LVRDTPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMT 62

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
            +      F +  ++   G  P+  T N L+   C  G V        +++   F  D V
Sbjct: 63  FS------FTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQV 116

Query: 396 TFTSLI 401
           ++ +L+
Sbjct: 117 SYATLL 122


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 183/357 (51%), Gaps = 36/357 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++AL  F+ ML+M P  P +  F  L   + K KHY TVLSL  +++  G+ P+ YT 
Sbjct: 48  TLDDALSSFNRMLHMHPP-PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTL 106

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NILIN FC + R+   F VL +IL+    P+  TF +LI+ LC E +I E   LF K+  
Sbjct: 107 NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG 166

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + +V TY TLINGLC+ G T  A+ L   M  GN      C+PD + Y++IID LCK
Sbjct: 167 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGN------CQPDVVVYTSIIDSLCK 220

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQC-LC--------LN------------- 285
           +   +  F  FS M        +  Y  L+   C LC        LN             
Sbjct: 221 DRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVI 280

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  ++D LCK  K+  A ++   + + G+ PNVVTYN L+ G C   +MDE         
Sbjct: 281 FSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEA------VK 334

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +F  +   G  PD+ +Y+ LIN +CKI R+     +F  +      P+ VT+++L+ 
Sbjct: 335 VFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMH 391



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 164/372 (44%), Gaps = 50/372 (13%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +F  M++   S P + ++N L   L     +  V +L   +  + + P+   ++ +
Sbjct: 226 QAFNLFSEMIHQGIS-PSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTV 284

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G+V     V+  +++    P+ VT+ +L+   C  S + EA  +F  +   G 
Sbjct: 285 VDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF 344

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV +Y+TLING C+      A+ LFEEM            P+ +TYST++ GLC    
Sbjct: 345 APDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKE------LIPNTVTYSTLMHGLCHVGR 398

Query: 252 SANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLC---------------------- 288
             + +  F  M +   +     Y       C+ L++LC                      
Sbjct: 399 LQDAIALFHEMVTRGQIPDFVSY-------CILLDYLCKNRRLDEAIALLKAIEGSNMDP 451

Query: 289 -------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
                  +IDG+C+  +L+ AR+LF +L   GL PNV TY I+I GLC  G + E     
Sbjct: 452 DIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASK-- 509

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               LF  +   G  P+  TYN++   F +      G  +   +L   F+ D  T T L+
Sbjct: 510 ----LFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLV 565

Query: 402 KILEINSFFRQV 413
           ++L  +   + V
Sbjct: 566 EMLSDDGLDQSV 577



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 125/305 (40%), Gaps = 64/305 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ VFD M+  +   P V S++ L     K +  +  + LF+ +    L P+  TY+ 
Sbjct: 330 DEAVKVFDTMV-CKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYST 388

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  C +GR+     +   ++     PD V++  L+  LC   R+ EA AL   +    
Sbjct: 389 LMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 448

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D+  Y  +I+G+CR G    A +LF  +++          P+  TY+ +I+GLC++ 
Sbjct: 449 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKG------LHPNVWTYTIMINGLCQQ- 501

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                                    GL     L  A +LF  + 
Sbjct: 502 -----------------------------------------GL-----LAEASKLFGEMK 515

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETV--FLLFKRLNSTGLFPDLYTYNILINC 368
           R G  PN  TYN++ RG          ++ ET+    L + + + G   D+ T  +L+  
Sbjct: 516 RKGYSPNGCTYNLITRGFL--------RNNETLRGIQLLQEMLARGFSADVSTSTVLVEM 567

Query: 369 FCKIG 373
               G
Sbjct: 568 LSDDG 572



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LI+  C + +L  A  +   + + G  PN+ T+N LIRGLC +G++ E  H      LF 
Sbjct: 109 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLH------LFD 162

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++   G  P++ TY  LIN  CK+G  S+   +   +      PD V +TS+I  L
Sbjct: 163 KMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 218


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 183/357 (51%), Gaps = 36/357 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T + A+  F+ ML M+P  P    FN L   +AK KH+ T+LSL  +++  G+ P+ YT 
Sbjct: 41  TIDGAISSFNRMLRMQPP-PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTL 99

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           +ILIN FC + RV   F VL +IL+    PD  TFT+LI+ +  E +I EA  LF K+  
Sbjct: 100 HILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIG 159

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   DV TY TLINGLC+ G+T  A+ L   M   N      C+P+   Y+TIID LCK
Sbjct: 160 EGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKN------CQPNVFAYNTIIDSLCK 213

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQC-LC---------------------LN 285
           +   +  F  FS M +      +  Y  L+   C LC                     ++
Sbjct: 214 DRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVS 273

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  ++D LCK  K+  A ++   + + G+ PNVVTY  L+ G C   +MDE         
Sbjct: 274 FNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEA------VK 327

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +F  +   G  P++ +YN LIN +CKI R+     +FG +      PD VT+++LI 
Sbjct: 328 VFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIH 384



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 166/357 (46%), Gaps = 38/357 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M+    S P + ++N L   L     +  V +L   +  + + PD  ++N +
Sbjct: 219 EAFNLFSEMVTKGIS-PDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 277

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G+V+    V+ ++++    P+ VT+T+L+   C  S + EA  +F  +   GC
Sbjct: 278 VDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGC 337

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +V +YNTLING C+      A+ LF EM            PD +TYST+I GLC    
Sbjct: 338 MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQE------LIPDTVTYSTLIHGLCHVER 391

Query: 252 SANFLG-FSCMASFSALNKMAFYFPLVRVQC-----------------------LCLNFL 287
             + +  F  M + S +  +  Y  L+   C                       + +N +
Sbjct: 392 LQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNI 451

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
             IDG+C+  +L+ AR+LF +L   GL P+V TY+I+I GLC  G +DE         LF
Sbjct: 452 A-IDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASK------LF 504

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + ++  G   +   YN +   F +    S    +   ++   F+ DA T T  +K+L
Sbjct: 505 REMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKML 561


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/372 (33%), Positives = 190/372 (51%), Gaps = 38/372 (10%)

Query: 58  KSSGEGDITS--ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKR 115
           K  G G  TS  I+ ++AL  F  M+ M P RP V  F    G +AK K Y + +SL  +
Sbjct: 63  KHCGFGSNTSNDISIDDALTSFYRMVRMNP-RPSVVEFGKFLGSIAKKKQYSSAVSLCNQ 121

Query: 116 LNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175
           ++L G+  + Y+ N+LINC C++  V     V+G++ +    PDA+TF +LI  LC E +
Sbjct: 122 MDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGK 181

Query: 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
           I EA  LF ++   G E +V +YNT+INGLC+ G+TI+A+ +F +M    G      +P+
Sbjct: 182 IKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRG------KPN 235

Query: 236 AITYSTIIDGLCKE---AGSANFL--------------------GFSCMASFSALNKMAF 272
            +TY+TIID LCK+     +  FL                    GF  +   +   ++  
Sbjct: 236 VVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFK 295

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                 V    + F  L+DGLCK   +  AR + +++   G  PN  TYN L+ G C   
Sbjct: 296 EMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHN 355

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           QMDE      + +        G  P+L +YNILIN +CK  R++    +   +     TP
Sbjct: 356 QMDEAIKVLGIMI------GKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTP 409

Query: 393 DAVTFTSLIKIL 404
           D VT+++L++ L
Sbjct: 410 DTVTYSTLMQGL 421



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 183/409 (44%), Gaps = 40/409 (9%)

Query: 8   NGRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLE--QFLKERCKSSGEGDI 65
           NG    A R+ RK   +    +P+  T    +    KDR   E  +FL E        D+
Sbjct: 214 NGNTIMAVRVFRKMEQN--RGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDV 271

Query: 66  TSITP-----------NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFK 114
            +              NEA  +F  M+  R   P   +FNIL   L K         + +
Sbjct: 272 VTYNTILHGFCSLGQLNEATRLFKEMVG-RNVMPDTVTFNILVDGLCKEGMVSEARCVSE 330

Query: 115 RLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174
            +   G  P+ YTYN L++ +C   ++     VLG ++     P+  ++  LI   C   
Sbjct: 331 TMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSK 390

Query: 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234
           R+ EA  L +++       D  TY+TL+ GLC+ G    ALNLF+EM +     G++  P
Sbjct: 391 RMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSS----GLL--P 444

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           D + YS ++DG CK       L            K+       R++   + +  LI G+ 
Sbjct: 445 DLMAYSILLDGFCKHGHLDEAL------------KLLKEMHERRIKPNIILYTILIRGMF 492

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
              KL++A+ELF  L   G+ P++ TYN++I+GL  +G  DE   YE     F+++   G
Sbjct: 493 IAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEA--YE----FFRKMEDDG 546

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
             PD  +YN++I  F +    S+   +   ++   F+ D+ TF  L+ +
Sbjct: 547 FLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDL 595


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  202 bits (514), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 183/357 (51%), Gaps = 36/357 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++AL  F+ ML+M P  P +  F  L   + K KHY TVLSL  +++  G+ P+ YT 
Sbjct: 39  TLDDALSSFNRMLHMHPP-PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTL 97

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NILIN FC + R+   F VL +IL+    P+  TF +LI+ LC E +I E   LF K+  
Sbjct: 98  NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG 157

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + +V TY TLINGLC+ G T  A+ L   M  GN      C+PD + Y++IID LCK
Sbjct: 158 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGN------CQPDVVVYTSIIDSLCK 211

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQC-LC--------LN------------- 285
           +   +  F  FS M        +  Y  L+   C LC        LN             
Sbjct: 212 DRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVI 271

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  ++D LCK  K+  A ++   + + G+ PNVVTYN L+ G C   +MDE         
Sbjct: 272 FSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEA------VK 325

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +F  +   G  PD+ +Y+ LIN +CKI R+     +F  +      P+ VT+++L+ 
Sbjct: 326 VFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMH 382



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 164/372 (44%), Gaps = 50/372 (13%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +F  M++   S P + ++N L   L     +  V +L   +  + + P+   ++ +
Sbjct: 217 QAFNLFSEMIHQGIS-PSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTV 275

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G+V     V+  +++    P+ VT+ +L+   C  S + EA  +F  +   G 
Sbjct: 276 VDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF 335

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV +Y+TLING C+      A+ LFEEM            P+ +TYST++ GLC    
Sbjct: 336 APDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKE------LIPNTVTYSTLMHGLCHVGR 389

Query: 252 SANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLC---------------------- 288
             + +  F  M +   +     Y       C+ L++LC                      
Sbjct: 390 LQDAIALFHEMVTRGQIPDFVSY-------CILLDYLCKNRRLDEAIALLKAIEGSNMDP 442

Query: 289 -------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
                  +IDG+C+  +L+ AR+LF +L   GL PNV TY I+I GLC  G + E     
Sbjct: 443 DIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASK-- 500

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               LF  +   G  P+  TYN++   F +      G  +   +L   F+ D  T T L+
Sbjct: 501 ----LFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLV 556

Query: 402 KILEINSFFRQV 413
           ++L  +   + V
Sbjct: 557 EMLSDDGLDQSV 568



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 125/305 (40%), Gaps = 64/305 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ VFD M+  +   P V S++ L     K +  +  + LF+ +    L P+  TY+ 
Sbjct: 321 DEAVKVFDTMV-CKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYST 379

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  C +GR+     +   ++     PD V++  L+  LC   R+ EA AL   +    
Sbjct: 380 LMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 439

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D+  Y  +I+G+CR G    A +LF  +++          P+  TY+ +I+GLC++ 
Sbjct: 440 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKG------LHPNVWTYTIMINGLCQQ- 492

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                                    GL     L  A +LF  + 
Sbjct: 493 -----------------------------------------GL-----LAEASKLFGEMK 506

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETV--FLLFKRLNSTGLFPDLYTYNILINC 368
           R G  PN  TYN++ RG          ++ ET+    L + + + G   D+ T  +L+  
Sbjct: 507 RKGYSPNGCTYNLITRGFL--------RNNETLRGIQLLQEMLARGFSADVSTSTVLVEM 558

Query: 369 FCKIG 373
               G
Sbjct: 559 LSDDG 563



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LI+  C + +L  A  +   + + G  PN+ T+N LIRGLC +G++ E  H      LF 
Sbjct: 100 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLH------LFD 153

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++   G  P++ TY  LIN  CK+G  S+   +   +      PD V +TS+I  L
Sbjct: 154 KMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 209


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/360 (35%), Positives = 179/360 (49%), Gaps = 48/360 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ ML MR + PP+  FN +    AK KHY T +SL  RL L G+ PD  T NI
Sbjct: 41  DDAVSQFNRMLCMRHT-PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC MG+++ GF VL +IL+  + PD VT  +LIK LC + ++ +A     KL   G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +L+  +Y TLING+C+ G T  A+ L +++       G + +P+ + YSTIID LCK  
Sbjct: 160 FQLNQVSYGTLINGVCKIGDTRAAIKLLQKID------GRLTKPNVVMYSTIIDALCKYQ 213

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             +   G      FS +        +V        +  LI G C   KLK A  L   + 
Sbjct: 214 LVSEAYGL-----FSEMTVKGISADVV-------TYSTLIYGFCIEGKLKEAIGLLNEMV 261

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL------------------------- 345
              + PNV TYNIL+  LC +G++ E K    V L                         
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK 321

Query: 346 ----LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               +F  ++  G+ PD++TY ILIN FCK   V     +F  +      P  VT++SLI
Sbjct: 322 KAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 164/331 (49%), Gaps = 25/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F  M     S   VT   +++G   + K     + L   + L  + P+ YTYNI
Sbjct: 216 SEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGK-LKEAIGLLNEMVLKTINPNVYTYNI 274

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G+V     VL  +L++C  PD +T+++L+        + +A  +F  + + G
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV TY  LING C+      ALNLF+EM   N        P  +TYS++IDGLCK +
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN------MVPGIVTYSSLIDGLCK-S 387

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G   ++       +  +++M        V    + +  LIDGLCK   L  A  LF  + 
Sbjct: 388 GRIPYV-------WDLIDEMHDRGQPANV----ITYSSLIDGLCKNGHLDRAIALFNKMK 436

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ PN  T+ IL+ GLC  G++ + +       +F+ L + G   ++YTYN++I+  C
Sbjct: 437 DQGIRPNTFTFTILLDGLCKGGRLKDAQE------VFQDLLTKGYHLNVYTYNVMIDGHC 490

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G +     +  ++  +   PDAVTF  +I
Sbjct: 491 KQGLLEEALTMLSKMEDNGCIPDAVTFEIII 521



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/268 (33%), Positives = 140/268 (52%), Gaps = 26/268 (9%)

Query: 104  KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTF 163
            KHY T +SL  RL L G+ PD +T NILINCFC MG+++  F +L +IL+  + PD +TF
Sbjct: 940  KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999

Query: 164  TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
            T+LI  LC + ++ +A     KL   G +L+  +Y TLING+C+ G T  A+ L  ++  
Sbjct: 1000 TTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID- 1058

Query: 224  GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
                 G + +PD + Y+TIID LCK    +   G            + F   +  +    
Sbjct: 1059 -----GRLTKPDVVMYNTIIDALCKHQLVSKAYG------------LFFEMNVKGISADV 1101

Query: 284  LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ--MDETKHYE 341
            + +  LI G C + KLK A  L   +    + PNV TYNIL+  LC +G+  +DE+    
Sbjct: 1102 VTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDES---- 1157

Query: 342  TVFLLFKRLNSTGLFPDLYTYNILINCF 369
                +  ++   G   +  T+ I+I+  
Sbjct: 1158 --LSMLSKMEDNGCKANAVTFEIIISAL 1183



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 7/189 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F  M + +   P + +++ L   L K+     V  L   ++  G   +  TY+ 
Sbjct: 356 DEALNLFKEM-HQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSS 414

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G +     +  ++      P+  TFT L+  LC   R+ +A  +F  L   G
Sbjct: 415 LIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKG 474

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             L+V+TYN +I+G C+ G    AL +  +M + NG     C PDA+T+  II  L K+ 
Sbjct: 475 YHLNVYTYNVMIDGHCKQGLLEEALTMLSKMED-NG-----CIPDAVTFEIIIIALFKKD 528

Query: 251 GSANFLGFS 259
            +   +GF 
Sbjct: 529 ENGGNVGFD 537



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 34/231 (14%)

Query: 179  AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
            A +L  +L + G + D+FT N LIN  C  G      ++  ++            PD IT
Sbjct: 945  AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRG------YHPDTIT 998

Query: 239  YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCK 295
            ++T+I+GLC +                 +NK   +   +  Q   LN   +  LI+G+CK
Sbjct: 999  FTTLINGLCLKG---------------QVNKALHFHDKLLAQGFQLNQVSYGTLINGVCK 1043

Query: 296  ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY--ETVFLLFKRLNST 353
            I   + A +L + +      P+VV YN +I  LC        KH      + LF  +N  
Sbjct: 1044 IGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALC--------KHQLVSKAYGLFFEMNVK 1095

Query: 354  GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            G+  D+ TYN LI  FC +G++     +  +++     P+  T+  L+  L
Sbjct: 1096 GISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDAL 1146



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 109/264 (41%), Gaps = 24/264 (9%)

Query: 79   YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
            + L ++  +P + + NIL  C           S+  ++   G  PD  T+  LIN  C  
Sbjct: 950  HRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLK 1009

Query: 139  GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
            G+V+       ++L   F  + V++ +LI  +C       A  L  K+     + DV  Y
Sbjct: 1010 GQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMY 1069

Query: 199  NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
            NT+I+ LC+      A  LF EM N  G        D +TY+T+I G C        +G 
Sbjct: 1070 NTIIDALCKHQLVSKAYGLFFEM-NVKG-----ISADVVTYNTLIYGFCIVGKLKEAIGL 1123

Query: 259  SCMASFSALNKMAFYF--PLVRVQCLCLNFLCLIDGLCKISK--LKIARELFQSLPRAGL 314
                    LNKM      P VR       +  L+D LCK  K  L  +  +   +   G 
Sbjct: 1124 --------LNKMVLKTINPNVRT------YNILVDALCKEGKDLLDESLSMLSKMEDNGC 1169

Query: 315  MPNVVTYNILIRGLCNDGQMDETK 338
              N VT+ I+I  L    + D+ +
Sbjct: 1170 KANAVTFEIIISALFEKDENDKVE 1193



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 28/257 (10%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R+L    TP  + F  ++           A +L  +L + G + D+ T N LIN  C  G
Sbjct: 49  RMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMG 108

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF--SCMASFSAL 267
                 ++  ++            PD +T +T+I GLC +      L F    +A    L
Sbjct: 109 QITFGFSVLAKILKRG------YPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQL 162

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N++++                LI+G+CKI   + A +L Q +      PNVV Y+ +I  
Sbjct: 163 NQVSYG--------------TLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDA 208

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC    + E       + LF  +   G+  D+ TY+ LI  FC  G++     +   ++ 
Sbjct: 209 LCKYQLVSEA------YGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVL 262

Query: 388 SCFTPDAVTFTSLIKIL 404
               P+  T+  L+  L
Sbjct: 263 KTINPNVYTYNILVDAL 279



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 43/67 (64%)

Query: 338  KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
            KHY T   L  RL   G+ PDL+T NILINCFC +G+++  F I  +IL   + PD +TF
Sbjct: 940  KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999

Query: 398  TSLIKIL 404
            T+LI  L
Sbjct: 1000 TTLINGL 1006



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 2/143 (1%)

Query: 81   LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
            ++ R ++P V  +N +   L K +       LF  +N+ G+  D  TYN LI  FC +G+
Sbjct: 1057 IDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGK 1116

Query: 141  VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM--EAAALFTKLRVFGCELDVFTY 198
            +     +L +++     P+  T+  L+  LC E + +  E+ ++ +K+   GC+ +  T+
Sbjct: 1117 LKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTF 1176

Query: 199  NTLINGLCRTGHTIVALNLFEEM 221
              +I+ L           L  EM
Sbjct: 1177 EIIISALFEKDENDKVEKLLHEM 1199



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 6/144 (4%)

Query: 261  MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
            M  +S    ++    L  +Q        LI+  C + ++     +   + + G  P+ +T
Sbjct: 939  MKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTIT 998

Query: 321  YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
            +  LI GLC  GQ+++  H+    L      + G   +  +Y  LIN  CKIG   +   
Sbjct: 999  FTTLINGLCLKGQVNKALHFHDKLL------AQGFQLNQVSYGTLINGVCKIGDTRAAIK 1052

Query: 381  IFGRILPSCFTPDAVTFTSLIKIL 404
            +  +I      PD V + ++I  L
Sbjct: 1053 LLRKIDGRLTKPDVVMYNTIIDAL 1076


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 125/361 (34%), Positives = 180/361 (49%), Gaps = 50/361 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ ML MR + PP+  FN +    AK KHY T +SL  RL L G+ PD  T NI
Sbjct: 41  DDAVSQFNRMLCMRHT-PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC MG+++ GF VL +IL+  + PD VT  +LIK LC + ++ +A     KL   G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +L+  +Y TLING+C+ G T  A+    ++       G + +PD + Y+TIID +CK  
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRAAIKFLRKID------GRLTKPDVVMYNTIIDAMCKYQ 213

Query: 251 GSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
             +   G FS MA             +  +    + +  LI G C + KLK A  L   +
Sbjct: 214 LVSEAYGLFSEMA-------------VKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEM 260

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL------------------------ 345
               + PNV TYNIL+  LC +G++ E K    V L                        
Sbjct: 261 VLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEV 320

Query: 346 -----LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                +F  ++  G+ PD++TY ILIN FCK   V     +F  +      P  VT++SL
Sbjct: 321 KKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSL 380

Query: 401 I 401
           I
Sbjct: 381 I 381



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 166/333 (49%), Gaps = 29/333 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFG--CLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +EA  +F  M     S   VT   +++G   + K K     + L   + L  + P+ YTY
Sbjct: 216 SEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKE---AIGLLNEMVLKTINPNVYTY 272

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NIL++  CK G+V     VL  +L++C  PD +T+++L+        + +A  +F  + +
Sbjct: 273 NILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSL 332

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   DV TY  LING C+      ALNLF+EM   N        P  +TYS++IDGLCK
Sbjct: 333 MGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN------MVPGIVTYSSLIDGLCK 386

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
            +G  +++       +  +++M        V    + +  LIDGLCK   L  A  LF  
Sbjct: 387 -SGRISYV-------WDLIDEMRDRGQPADV----ITYSSLIDGLCKNGHLDRAIALFNK 434

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +    + PN+ T+ IL+ GLC  G++ + +       +F+ L + G   ++YTYN++IN 
Sbjct: 435 MKDQEIRPNIFTFTILLDGLCKGGRLKDAQE------VFQDLLTKGYHLNVYTYNVMING 488

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            CK G +     +  ++  +   P+A TF ++I
Sbjct: 489 HCKQGLLEEALTMLSKMEDNGCIPNAFTFETII 521



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 106/257 (41%), Gaps = 28/257 (10%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R+L    TP  + F  ++           A +L  +L + G + D+ T N LIN  C  G
Sbjct: 49  RMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMG 108

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF--SCMASFSAL 267
                 ++  ++            PD +T +T+I GLC +      L F    +A    L
Sbjct: 109 QITFGFSVLAKILKRG------YPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQL 162

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N++++                LI+G+CKI   + A +  + +      P+VV YN +I  
Sbjct: 163 NQVSY--------------ATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDA 208

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           +C    + E       + LF  +   G+  D+ TYN LI  FC +G++     +   ++ 
Sbjct: 209 MCKYQLVSEA------YGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVL 262

Query: 388 SCFTPDAVTFTSLIKIL 404
               P+  T+  L+  L
Sbjct: 263 KTINPNVYTYNILVDAL 279



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 2/148 (1%)

Query: 76  VFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           V+D +  MR    P  V +++ L   L K  H D  ++LF ++    + P+ +T+ IL++
Sbjct: 393 VWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLD 452

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK GR+     V   +L   +  +  T+  +I   C +  + EA  + +K+   GC  
Sbjct: 453 GLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIP 512

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEM 221
           + FT+ T+I  L +      A  L  +M
Sbjct: 513 NAFTFETIIIALFKKDENDKAEKLLRQM 540


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  202 bits (513), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 186/361 (51%), Gaps = 36/361 (9%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           SI+ ++AL  F  ML M P RP V  F    G +AK K Y TV+SL  +++L G+  + Y
Sbjct: 70  SISIDDALASFYRMLRMNP-RPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVY 128

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           + NILINC C++  V     VLG++ +    PDA+TF +LI   C E  I EA  LF ++
Sbjct: 129 SLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEM 188

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G + DV +Y+T+INGLC++G+T +AL L  +M          C+P+ + Y+TIID L
Sbjct: 189 VRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKG------CKPNLVAYTTIIDSL 242

Query: 247 CKEA---GSANFLG-----------------FSCMASFSALNKMAFYFPLV---RVQCLC 283
           CK+     + + L                       S   LN+    F  +    V    
Sbjct: 243 CKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNT 302

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           + F  L+DGLCK   +  AR +F+++ + G  PN  TYN L+ G C + QMDE +    +
Sbjct: 303 VTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDI 362

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
            +        G  P +++YNILIN +CK  R+     +   +     TPD VT+++L++ 
Sbjct: 363 MV------DKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQG 416

Query: 404 L 404
           L
Sbjct: 417 L 417



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 161/333 (48%), Gaps = 25/333 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  +F+ M+  R   P   +F IL   L K         +F+ +   G  P+ YTYN 
Sbjct: 284 NEATILFNEMVG-RNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNA 342

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +C   ++     VL  ++     P   ++  LI   C   R+ EA +L  ++    
Sbjct: 343 LMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKE 402

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  TY+TL+ GLC+ G    ALNLF+EM +     G++  PD +TYST++DGLCK  
Sbjct: 403 LTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSS----GLL--PDLMTYSTLLDGLCKHG 456

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L            K+       +++   + +  LI+G+    KL++A+ELF  L 
Sbjct: 457 HLDEAL------------KLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLF 504

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P + TY I+I+GL  +G  DE   YE    LF+++   G  P+  +YN++I  F 
Sbjct: 505 ADGIQPTIRTYTIMIKGLLKEGLSDEA--YE----LFRKMEDDGFLPNSCSYNVIIQGFL 558

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           +    S+   +   ++   F+ D+ TF  L+ +
Sbjct: 559 QNQDSSTAIRLIDEMVGKRFSADSSTFQMLLDL 591



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 154/333 (46%), Gaps = 27/333 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A+ +   M++ R   P V +++ +        H +    LF  +    + P+  T+ I
Sbjct: 249 NDAMDLLSEMVD-RGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTI 307

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G VS    V   + +    P+A T+ +L+   C  +++ EA  +   +   G
Sbjct: 308 LVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKG 367

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   V +YN LING C+      A +L  EM+           PD +TYST++ GLC+  
Sbjct: 368 CAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKE------LTPDTVTYSTLMQGLCQVG 421

Query: 251 GSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                L  F  M S   L  +             + +  L+DGLCK   L  A +L +S+
Sbjct: 422 RPQEALNLFKEMCSSGLLPDL-------------MTYSTLLDGLCKHGHLDEALKLLKSM 468

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             + + P++V YNILI G+   G+++  K       LF +L + G+ P + TY I+I   
Sbjct: 469 QESKIEPDIVLYNILIEGMFIAGKLEVAKE------LFSKLFADGIQPTIRTYTIMIKGL 522

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            K G     + +F ++    F P++ ++  +I+
Sbjct: 523 LKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQ 555


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 179/333 (53%), Gaps = 25/333 (7%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++AL  F+ +L+M P  P +  F  L   +AK KHY TVLSL  +++  G+ P+ YT 
Sbjct: 25  TLDDALSSFNRLLHMHPP-PSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTL 83

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NILIN FC + RV   F VL +IL+    PD  TFT+LI+ LC E +I EA  LF K+  
Sbjct: 84  NILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID 143

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + +V TY TLINGLC+ G+T  A+ L   M  GN      C+PD + Y++IID LCK
Sbjct: 144 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPDVVIYTSIIDSLCK 197

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           +             +F+  ++M        +      +  L+  LC + + K    L   
Sbjct: 198 DR--------QVTEAFNLFSQMVGQ----GISPDIFTYTSLVHALCNLCEWKHVTTLLNQ 245

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +  + ++P+VV ++ ++  LC +G++ E   +E V ++ +R    G+ PD+ TY  L++ 
Sbjct: 246 MVNSKILPDVVIFSTVVDALCKEGKVTEA--HEIVDMMIQR----GVEPDVVTYTTLMDG 299

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            C    +     +F  ++   F PD +++T+LI
Sbjct: 300 HCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLI 332



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 24/255 (9%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R+L     P  V F  L+  +          +L T++  FG   +V+T N LIN  C   
Sbjct: 35  RLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLN 94

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A ++  ++        +  +PD  T++T+I GLC E      L       F  +  
Sbjct: 95  RVGFAFSVLAKI------LKLGHQPDPTTFTTLIRGLCVEGKIGEALHL-----FDKMID 143

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
             F       Q   + +  LI+GLCK+     A  L +S+ +    P+VV Y  +I  LC
Sbjct: 144 EGF-------QPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLC 196

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
            D Q+ E       F LF ++   G+ PD++TY  L++  C +        +  +++ S 
Sbjct: 197 KDRQVTEA------FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSK 250

Query: 390 FTPDAVTFTSLIKIL 404
             PD V F++++  L
Sbjct: 251 ILPDVVIFSTVVDAL 265



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 36/259 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +  +   L K +      +LF ++   G+ PD +TY  L++  C +    H   
Sbjct: 182 QPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTT 241

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L +++ S   PD V F++++  LC E ++ EA  +   +   G E DV TY TL++G C
Sbjct: 242 LLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHC 301

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID----------------GLCKE- 249
                  A+ +F+ M            PD I+Y+T+I+                GL KE 
Sbjct: 302 LQSEMDEAVKVFDMMVRKG------FAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKET 355

Query: 250 -----AGSANFLGFSCMASFSA----LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
                 G+   +    M  F      LN+M       ++    + F  ++D LCK  K+ 
Sbjct: 356 PDAVKGGAVEVIRKDKMKLFEKGRTLLNEMVNS----KIMPNVVIFSTVVDALCKEGKVM 411

Query: 301 IARELFQSLPRAGLMPNVV 319
            A ++   + + G+ PN V
Sbjct: 412 EAHDVVDMMIKRGVEPNAV 430



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 99/227 (43%), Gaps = 24/227 (10%)

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           +A + F +L        +  +  L+  + +  H    L+L  +M +    FGV   P+  
Sbjct: 28  DALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDS----FGV--PPNVY 81

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           T + +I+  C      N +GF+    FS L K+      +  Q     F  LI GLC   
Sbjct: 82  TLNILINSFCH----LNRVGFA----FSVLAKIL----KLGHQPDPTTFTTLIRGLCVEG 129

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           K+  A  LF  +   G  PNVVTY  LI GLC  G      +      L + +      P
Sbjct: 130 KIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVG------NTSAAIRLLRSMEQGNCQP 183

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           D+  Y  +I+  CK  +V+  F +F +++    +PD  T+TSL+  L
Sbjct: 184 DVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHAL 230


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  200 bits (508), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/380 (31%), Positives = 190/380 (50%), Gaps = 56/380 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKT-KHYDTVLSLFKRLNLTGLFPDRYTYN 129
           ++AL  F++ML+ +P  P +  F  L   + K  ++YD V+SL K++ L GL P+ YT +
Sbjct: 74  DDALASFNHMLHRKP-LPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLS 132

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           I +NCFC++ RV  GF VL ++++    P  VTFT+LI  LC      +A  LF  +   
Sbjct: 133 IFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAK 192

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           GC+ DV+TYNT+INGLC+ G T  A  L ++M          C+P+ +TYST+ID LC++
Sbjct: 193 GCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAG------CQPNMVTYSTLIDSLCRD 246

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                 L    +  FS       Y     +      +  LI GLCK S+ K A  L   +
Sbjct: 247 R-----LVNEALDIFS-------YMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEM 294

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDET----------------KHYETVFL-------- 345
               +MP++VT+N+L+   C +G++ E                   Y ++          
Sbjct: 295 TSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDV 354

Query: 346 -----LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                LF  + + G  P++++YNILIN +CK  R+     +F  ++    TP+ V++ +L
Sbjct: 355 VEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTL 414

Query: 401 I-------KILEINSFFRQV 413
           I       K+ E    FR +
Sbjct: 415 IHGFCQLGKLREAQDLFRNM 434



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 152/340 (44%), Gaps = 37/340 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEAL +F YM   +   P + ++  L   L K   +    +L   +    + PD  T+N+
Sbjct: 250 NEALDIFSYM-KAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNV 308

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ FCK G+VS    VL  +      P+ VT++SL+      + ++EA  LF  +   G
Sbjct: 309 LVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKG 368

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+ ++F+YN LING C+      A+ LF EM +          P+ ++Y+T+I G C+  
Sbjct: 369 CKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQG------LTPNNVSYNTLIHGFCQ-- 420

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN------FLCLIDGLCKISKLKIARE 304
                           L K+     L R  C   N      +  L+DG CK   L  A  
Sbjct: 421 ----------------LGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFR 464

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           LF+++    L PN+V Y IL+  +C  G   + +       LF  L   GL P +  Y  
Sbjct: 465 LFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARK------LFSELFVQGLQPHVQLYTT 518

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +IN  CK G +      F  +      PD +++  +I+ L
Sbjct: 519 IINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGL 558



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 144/318 (45%), Gaps = 30/318 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + +++ L   L + +  +  L +F  +   G+ PD +TY  LI   CK  R      
Sbjct: 230 QPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASA 289

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +      PD VTF  L+   C E ++ EA  +   +   G E +V TY++L+ G  
Sbjct: 290 LLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYS 349

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                + A  LF  M          C+P+  +Y+ +I+G CK                  
Sbjct: 350 LWTDVVEARKLFHVMITKG------CKPNIFSYNILINGYCKA---------------KR 388

Query: 267 LNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +++    F  +  Q L  N   +  LI G C++ KL+ A++LF+++   G +P++ TY+I
Sbjct: 389 IDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSI 448

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L+ G C  G + +       F LF+ + ST L P+L  Y IL++  CK G       +F 
Sbjct: 449 LLDGFCKQGYLGKA------FRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFS 502

Query: 384 RILPSCFTPDAVTFTSLI 401
            +      P    +T++I
Sbjct: 503 ELFVQGLQPHVQLYTTII 520



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 58/136 (42%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +++IL     K  +      LF+ +  T L P+   Y IL++  CK G       +
Sbjct: 441 PDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKL 500

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      P    +T++I  LC E  + EA   F  +   GC  D  +YN +I GL +
Sbjct: 501 FSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQ 560

Query: 208 TGHTIVALNLFEEMAN 223
                 AL L  EM +
Sbjct: 561 HKDESRALLLVGEMRD 576



 Score = 41.6 bits (96), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 44/109 (40%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P +  + IL   + K+ ++     LF  L + GL P    Y  +IN  CK G +     
Sbjct: 475 KPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALE 534

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
               +      PD +++  +I+ L        A  L  ++R  G   DV
Sbjct: 535 AFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADV 583


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 188/357 (52%), Gaps = 41/357 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-HYDTVLSLFKRLNLTGLFPDRYTYN 129
           ++AL  F++ML+ +P  P +  FN L   + + + +YD V+SL K++ L GL P+  T N
Sbjct: 72  DDALASFNHMLHRKP-LPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLN 130

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           ILINCFC M  V  GF VL ++++    P  +TFT+LI  LC      +A  LF  +   
Sbjct: 131 ILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVAR 190

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           GC+ DV+TY T+INGLC+ G T  A  L ++M    GE G  C+PD +TYST+ID LCK+
Sbjct: 191 GCQPDVYTYTTIINGLCKMGETAAAAGLIKKM----GEVG--CQPDVVTYSTLIDSLCKD 244

Query: 250 AGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLC------------------------L 284
                 L  FS M +      +  Y  L  +Q LC                        +
Sbjct: 245 RLVNEALDIFSYMKAKGISPTVVSYTSL--IQGLCSFSRWKEASAMLNEMTSLNIMPDIV 302

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            F  LID  CK   +  A+ + +++   G+ PNV+TYN L+ G     ++ E +      
Sbjct: 303 TFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARK----- 357

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            LF  + + G  PD+++Y+ILIN +C + R+     +F  ++    TP+ V++T+LI
Sbjct: 358 -LFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLI 413



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 141/331 (42%), Gaps = 60/331 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEAL +F YM   +   P V S+  L   L     +    ++   +    + PD  T+++
Sbjct: 248 NEALDIFSYM-KAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSL 306

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ FCK G V     VL  +      P+ +T+ SL+     +  ++EA  LF  +   G
Sbjct: 307 LIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRG 366

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+ DVF+Y+ LING C       A  LF EM +          P+ ++Y+T+I   C   
Sbjct: 367 CKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQG------LTPNTVSYTTLIHAFC--- 417

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                                       ++ KL+ ARELF+ + 
Sbjct: 418 --------------------------------------------QLGKLREARELFKDMH 433

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G +P++ TY++L+ G C  G + +       F LF+ +  T L P+L  Y ILI+  C
Sbjct: 434 TNGYLPDLCTYSVLLEGFCKQGYLGK------AFRLFRAMQGTYLKPNLVMYTILIDSMC 487

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G ++    +F  +      PD   +T++I
Sbjct: 488 KSGNLNHARKLFSELFVHGLQPDVQIYTTII 518



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 124/272 (45%), Gaps = 21/272 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  V   M  M    P V ++N L    +          LF  +   G  PD ++Y+IL
Sbjct: 319 EAQGVLKTMTEM-GVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSIL 377

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN +C + R+     +   ++    TP+ V++T+LI   C   ++ EA  LF  +   G 
Sbjct: 378 INGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGY 437

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ TY+ L+ G C+ G+   A  LF  M       G   +P+ + Y+ +ID +CK +G
Sbjct: 438 LPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQ------GTYLKPNLVMYTILIDSMCK-SG 490

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
           + N         FS L       P V++      +  +I+GLCK   L  A E F+ +  
Sbjct: 491 NLN----HARKLFSELFVHGLQ-PDVQI------YTTIINGLCKEGLLDEALEAFRKMEE 539

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
            G  PN  +YN++IRG       DE++  + +
Sbjct: 540 DGCPPNEFSYNVIIRGFLQ--HKDESRAVQLI 569



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 7/179 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F+ M++   + P   S+  L     +         LFK ++  G  PD  TY++
Sbjct: 388 DEAKQLFNEMIHQGLT-PNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSV 446

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+  FCK G +   F +   +  +   P+ V +T LI  +C    +  A  LF++L V G
Sbjct: 447 LLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHG 506

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            + DV  Y T+INGLC+ G    AL  F +M          C P+  +Y+ II G  + 
Sbjct: 507 LQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDG------CPPNEFSYNVIIRGFLQH 559



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 69/149 (46%), Gaps = 16/149 (10%)

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           LGFS +A    L           +Q   + F  LI+GLCK  +   A ELF  +   G  
Sbjct: 144 LGFSVLAKVIKLG----------LQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQ 193

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+V TY  +I GLC  G+            L K++   G  PD+ TY+ LI+  CK   V
Sbjct: 194 PDVYTYTTIINGLCKMGETAAAAG------LIKKMGEVGCQPDVVTYSTLIDSLCKDRLV 247

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +    IF  +     +P  V++TSLI+ L
Sbjct: 248 NEALDIFSYMKAKGISPTVVSYTSLIQGL 276



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++++L     K  +      LF+ +  T L P+   Y ILI+  CK G ++H   +
Sbjct: 439 PDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKL 498

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      PD   +T++I  LC E  + EA   F K+   GC  + F+YN +I G  +
Sbjct: 499 FSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQ 558

Query: 208 TGHTIVALNLFEEMAN 223
                 A+ L  EM +
Sbjct: 559 HKDESRAVQLIGEMRD 574


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/360 (34%), Positives = 179/360 (49%), Gaps = 48/360 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ ML MR + PP+  FN +    AK KHY T +SL  RL L G+ PD  T NI
Sbjct: 41  DDAVSQFNRMLCMRHT-PPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC MG+++ GF VL +IL+  + P  +TFT+LIK LC + ++ +A     KL   G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQG 159

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D  +Y TLING+C+ G T  A+ L  ++       G + +P+   Y+TIID LCK  
Sbjct: 160 IKFDQVSYGTLINGVCKIGDTRGAIKLVRKID------GRLTKPNVEMYNTIIDALCKYQ 213

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             +   G      FS +        +V        +  LI G C  SKLK A  L   + 
Sbjct: 214 LVSEAYGL-----FSEMTAKGISADVV-------TYTTLIYGFCIASKLKEAIGLLNEMV 261

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL------------------------- 345
              + PNV TYNIL+  LC +G++ E K+   V L                         
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELK 321

Query: 346 ----LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               +F  ++  G+ PD+++Y ILIN FCK   V     +F  +      P  VT++SLI
Sbjct: 322 KAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 161/341 (47%), Gaps = 39/341 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFG-CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +EA  +F  M     S   VT   +++G C+A        + L   + L  + P+ YTYN
Sbjct: 216 SEAYGLFSEMTAKGISADVVTYTTLIYGFCIASK--LKEAIGLLNEMVLKTINPNVYTYN 273

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           IL++  CK G+V     VL  +L++C  PD +T+++L+        + +A  +F  + + 
Sbjct: 274 ILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLM 333

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   DV +Y  LING C+      ALNLF+EM   N        P  +TYS++IDGLCK 
Sbjct: 334 GVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKN------MVPGIVTYSSLIDGLCKS 387

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIAR 303
                              ++++ + L+       +    + +  LIDGLCK   L  A 
Sbjct: 388 G------------------RISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAI 429

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            LF  +   G+ P   T+ IL+ GLC  G++ + +        F+ L + G   D+Y YN
Sbjct: 430 ALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQE------AFQDLLTKGYHLDVYKYN 483

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++IN  CK G +     +  ++  +   P+AVTF  +I  L
Sbjct: 484 VMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINAL 524



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 118/285 (41%), Gaps = 59/285 (20%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V +++ L               +F  ++L G+ PD ++Y ILIN FCK   V     
Sbjct: 301 KPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALN 360

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   + +    P  VT++SLI  LC   RI     L  ++R  G   +V TYN+LI+GLC
Sbjct: 361 LFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLC 420

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + GH   A+ LF +M +          P + T++ ++DGLCK                  
Sbjct: 421 KNGHLDRAIALFNKMKDQG------IRPCSFTFTILLDGLCKGG---------------- 458

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                                          +LK A+E FQ L   G   +V  YN++I 
Sbjct: 459 -------------------------------RLKDAQEAFQDLLTKGYHLDVYKYNVMIN 487

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           G C  G ++E         +  ++   G  P+  T++I+IN   K
Sbjct: 488 GHCKQGLLEEA------LTMLSKMEENGCVPNAVTFDIIINALFK 526



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 6/87 (6%)

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P ++ +N ++          + KHY T   L  RL   G+ PDL T NILINCFC +G++
Sbjct: 57  PPIIQFNKILDSFA------KIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQI 110

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + GF +  +IL   + P  +TFT+LIK
Sbjct: 111 TFGFSVLAKILKRGYQPHTITFTTLIK 137



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 2/148 (1%)

Query: 76  VFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           V+D +  MR    P  V ++N L   L K  H D  ++LF ++   G+ P  +T+ IL++
Sbjct: 393 VWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLD 452

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK GR+         +L   +  D   +  +I   C +  + EA  + +K+   GC  
Sbjct: 453 GLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVP 512

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEM 221
           +  T++ +IN L +      A  L  +M
Sbjct: 513 NAVTFDIIINALFKKDENDKAEKLLRQM 540



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 18/171 (10%)

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
           P  I ++ I+D             F+ +  +S    ++    L  +Q   +    LI+  
Sbjct: 57  PPIIQFNKILDS------------FAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCF 104

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           C + ++     +   + + G  P+ +T+  LI+GLC  GQ+++  H+        +L + 
Sbjct: 105 CHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFH------DKLLAQ 158

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G+  D  +Y  LIN  CKIG       +  +I      P+   + ++I  L
Sbjct: 159 GIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDAL 209


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 187/357 (52%), Gaps = 36/357 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL  F  M+ + P RP V  F    G  AK K Y TV+SL  +++L  +  + Y+ NI
Sbjct: 75  DDALASFYRMVRINP-RPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNI 133

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINC C++  V     VLG++ +    PDA+TF +LI  LC E +I EA  LF ++   G
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRG 193

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            E +V +Y T+INGLC+TG+T +A+++F++M   NG     C+P+ +TYSTIID LCK+ 
Sbjct: 194 HEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQ-NG-----CKPNVVTYSTIIDSLCKDR 247

Query: 251 ---GSANFL--------------------GFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
               +  FL                    GF  +   +   ++        V    + F 
Sbjct: 248 LVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFT 307

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L+DGLCK   +  AR +F+++   G+ P++ TYN L+ G C    M+E K       +F
Sbjct: 308 ILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKK------VF 361

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + +   G  P  ++YNILIN +CK  R+     +   +      PD VT+++L++ L
Sbjct: 362 EIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGL 418



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 158/342 (46%), Gaps = 25/342 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  +F  M+  R   P   +F IL   L K         +F+ +   G+ PD  TYN 
Sbjct: 285 NEATRLFKEMVG-RDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNA 343

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +C    ++    V   ++R    P A ++  LI   C   R+ EA +L  ++    
Sbjct: 344 LMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKA 403

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  TY+TL+ GLC+ G    ALNLF+EM +    +G    P+ +TY  ++DG CK  
Sbjct: 404 LNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCS----YGP--HPNLVTYVILLDGFCKHG 457

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L            K+       +++   +++  LI+G+    KL++A+ELF  L 
Sbjct: 458 HLDEAL------------KLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLF 505

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P++ TY ++I+GL  +G  DE       + LF+++   G  P+  +YN++I  F 
Sbjct: 506 GDGTRPDIRTYTVMIKGLLKEGLSDE------AYDLFRKMEDDGFLPNSCSYNVMIQGFL 559

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           +    S+   +   ++   F+ +  TF  L+ +   +    Q
Sbjct: 560 QNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLDLESQDEIISQ 601



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 148/332 (44%), Gaps = 25/332 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A+     M+  R   P V ++N +          +    LFK +    + P+  T+ I
Sbjct: 250 NDAMEFLSEMVE-RGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTI 308

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G VS   +V   +      PD  T+ +L+   C +  + EA  +F  +   G
Sbjct: 309 LVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKG 368

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C     +YN LING C++     A +L  EM      +     PD +TYST++ GLC+  
Sbjct: 369 CAPGAHSYNILINGYCKSRRMDEAKSLLAEM------YHKALNPDTVTYSTLMQGLCQLG 422

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L            +M  Y P   +    + ++ L+DG CK   L  A +L +S+ 
Sbjct: 423 RPKEALNL--------FKEMCSYGPHPNL----VTYVILLDGFCKHGHLDEALKLLKSMK 470

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
              L PN+V Y ILI G+   G+++  K       LF +L   G  PD+ TY ++I    
Sbjct: 471 EKKLEPNIVHYTILIEGMFIAGKLEVAKE------LFSKLFGDGTRPDIRTYTVMIKGLL 524

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           K G     + +F ++    F P++ ++  +I+
Sbjct: 525 KEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQ 556


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 129/359 (35%), Positives = 183/359 (50%), Gaps = 36/359 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++AL  F+ ML+M P  P    F  L   +AK KHY TVLSL  +++  G+ PD YT 
Sbjct: 130 TLDDALSSFNRMLHMHPP-PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 188

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NILIN FC + R+ + F VL ++L+    PD  TF +LI+ LC E +I EA  LF K   
Sbjct: 189 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 248

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + DV TY TL+NGLC+ G+T  A+ L   M   N      C P+ I Y+TIID LCK
Sbjct: 249 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKN------CRPNVIAYNTIIDSLCK 302

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQC-LC--------LN------------- 285
           +   +  F  FS M +      +  Y  L+   C LC        LN             
Sbjct: 303 DRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVV 362

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  ++D LCK   + IA ++   + + G+ P+VVTY  L+ G C   +MDE         
Sbjct: 363 FSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEA------VK 416

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +F  +   G  P++ +YNILIN +C+I R+     +  ++       D VT+ +LI  L
Sbjct: 417 VFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGL 475



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 163/356 (45%), Gaps = 36/356 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M+    S P + ++N L   L     +  V +L   +  + + P+   ++ +
Sbjct: 308 EAFNLFSEMITKGIS-PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTV 366

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G ++    V+  +++    PD VT+T+L+   C  S + EA  +F  +   GC
Sbjct: 367 VDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC 426

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +V +YN LING C+      A+ L E+M+      G++   D +TY+T+I GLC    
Sbjct: 427 VPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQ----GLIA--DTVTYNTLIHGLCHVGR 480

Query: 252 SANFLG-FSCMASFSALNKMAFYFPLVRVQCL----------------------CLNFLC 288
             + +  F  M +   +  +  Y  L+   C                        L +  
Sbjct: 481 LQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNI 540

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
            IDG+C+  +L+ AR+LF +L   GL P+V TYNI+I GLC  G +DE         LF+
Sbjct: 541 AIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANK------LFR 594

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +++  G   D   YN +I  F +         +   +L   F+ D  T T ++++L
Sbjct: 595 KMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEML 650



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 121/264 (45%), Gaps = 23/264 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ VFD M++ +   P V S+NIL     + +  D  + L ++++L GL  D  TYN 
Sbjct: 412 DEAVKVFDTMVH-KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 470

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C +GR+ H   +   ++ S   PD VT+  L+  LC    + EA  L   +    
Sbjct: 471 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 530

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D+  YN  I+G+CR G    A +LF  +++         +PD  TY+ +I GLCK  
Sbjct: 531 LDADILVYNIAIDGMCRAGELEAARDLFSNLSSKG------LQPDVRTYNIMIHGLCKRG 584

Query: 251 --GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
               AN L F  M           Y  ++R             G  + ++   A +L Q 
Sbjct: 585 LLDEANKL-FRKMDENGCSRDGCIYNTIIR-------------GFLRSNETFGATQLLQE 630

Query: 309 LPRAGLMPNVVTYNILIRGLCNDG 332
           +   G   +V T  +++  L +DG
Sbjct: 631 MLAEGFSADVSTTTLIVEMLSDDG 654


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 122/357 (34%), Positives = 183/357 (51%), Gaps = 40/357 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+  F+ +L +RP  PPV  FN L G L K KHY TV+SL K+++L+ + P+ YT  IL
Sbjct: 52  DAVASFNQLLGIRP-LPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTIL 110

Query: 132 INCFCKMGR--VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           INC C   R  V   F  LG++ +    P  VTF +L+  LC++++I++A  LF ++   
Sbjct: 111 INCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKM 170

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G    + TY T+I GLC+ GHT  AL L ++M          C+PD + Y+T+ID LCK+
Sbjct: 171 GFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKG------CKPDVVAYNTVIDSLCKD 224

Query: 250 --AGSANFLGFSCMA-------------------SFSALNKMAFYFPLV---RVQCLCLN 285
             A  A +  FS M                    +   LN+    F  +    V    + 
Sbjct: 225 RRANEAMYF-FSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVT 283

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  L+DGLCK   +  AR +F+ +   G+ P+  TY+ L+ G C   QMDE +       
Sbjct: 284 FTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQK------ 337

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           LF  +   G  P +  YNILIN  CK  R++    +   +     TPD VT+++L++
Sbjct: 338 LFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQ 394



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 158/333 (47%), Gaps = 25/333 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  +F  M+  R   P   +F IL   L K         +F+ +   G+ PD YTY+ 
Sbjct: 263 NEATSLFKQMIG-RNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSA 321

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +C   ++     +   ++   F P    +  LI   C   R+ EA  L +++    
Sbjct: 322 LMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRD 381

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  TY+TL+ G C+ G   VA  LF+EM +    +G++  PD+ITYS ++DGLCK  
Sbjct: 382 LTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCS----YGLL--PDSITYSILLDGLCKHG 435

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                       +F  L  M       +++     +  LI G+C   KL+ ARELF +L 
Sbjct: 436 --------HLDEAFRLLKAMQ----ESKIEPHICIYNILIQGMCNFGKLEAARELFSNLF 483

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+VVTY ++I GL  +G  +E         +F+++   G  P+  TYN+ I  F 
Sbjct: 484 VKGIQPSVVTYTVMISGLLKEGLSNEACE------MFRKMVVNGCLPNSCTYNVAIQGFL 537

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           + G  S+   +   ++   F+ D+ TF  L+ +
Sbjct: 538 RNGDPSNAVRLIEEMVGRGFSADSSTFQMLLDL 570



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 75/187 (40%), Gaps = 18/187 (9%)

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
           + +A+ N   G+   P  + ++ ++  L K+   +  +        S +    +   ++ 
Sbjct: 52  DAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTIL- 110

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-DET 337
           + CLC +             +  A      + + GL P  VT+  L+ GLC+  ++ D  
Sbjct: 111 INCLCHS---------NRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAV 161

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           K       LF  +   G  P L TY  +I   CKIG  ++   +  ++      PD V +
Sbjct: 162 K-------LFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAY 214

Query: 398 TSLIKIL 404
            ++I  L
Sbjct: 215 NTVIDSL 221


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 190/348 (54%), Gaps = 29/348 (8%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           +ER +S     +  I  ++A+ +F  M++ RP  P V  F+ LF  +AKTK YD VL+L 
Sbjct: 155 RERLRSG----LVDIKADDAIDLFRDMIHSRP-LPTVIDFSRLFSAIAKTKQYDLVLALC 209

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           K++ L G+  + YT +I+INCFC+  ++   F  +G+I++  + P+ +TF++LI  LC E
Sbjct: 210 KQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLE 269

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
            R+ EA  L  ++   G + D+ T NTL+NGLC +G    A+ L ++M     E+G  C+
Sbjct: 270 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV----EYG--CQ 323

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
           P+A+TY  +++ +CK   +A  L    +      N          ++   + +  +IDGL
Sbjct: 324 PNAVTYGPVLNVMCKSGQTA--LAMELLRKMEERN----------IKLDAVKYSIIIDGL 371

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK   L  A  LF  +   G+  N++TYNILI G CN G+ D+         L + +   
Sbjct: 372 CKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAK------LLRDMIKR 425

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + P++ T+++LI+ F K G++     +   ++     PD +T+TSLI
Sbjct: 426 KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLI 473



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 143/321 (44%), Gaps = 24/321 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +F++L     K         L K +   G+ PD  TY  LI+ FCK   +  
Sbjct: 425 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 484

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              ++  ++     P+  TF  LI   C  +RI +   LF K+ + G   D  TYNTLI 
Sbjct: 485 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 544

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C  G   VA  LF+EM +          P+ +TY  ++DGLC    S   L       
Sbjct: 545 GFCELGKLNVAKELFQEMVSRK------VPPNIVTYKILLDGLCDNGESEKALEI----- 593

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F  + K      +         +  +I G+C  SK+  A +LF SLP  G+ P V TYNI
Sbjct: 594 FEKIEKSKMELDIGI-------YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNI 646

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +I GLC  G + E +      LLF+++   G  PD +TYNILI      G  +    +  
Sbjct: 647 MIGGLCKKGPLSEAE------LLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIE 700

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +    F+ DA T   +I +L
Sbjct: 701 ELKRCGFSVDASTIKMVIDML 721



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 157/351 (44%), Gaps = 47/351 (13%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R  +     ++I+   L K    D   +LF  + + G+  +  TYNILI  FC  GR
Sbjct: 352 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 411

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
              G  +L  +++    P+ VTF+ LI     E ++ EA  L  ++   G   D  TY +
Sbjct: 412 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 471

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+G C+  H   A  + + M +        C+P+  T++ +I+G CK    AN +    
Sbjct: 472 LIDGFCKENHLDKANQMVDLMVSKG------CDPNIRTFNILINGYCK----ANRID--- 518

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                   KM+    L  V    + +  LI G C++ KL +A+ELFQ +    + PN+VT
Sbjct: 519 -DGLELFRKMS----LRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVT 573

Query: 321 YNILIRGLCNDGQMDE-----------------------------TKHYETVFLLFKRLN 351
           Y IL+ GLC++G+ ++                                 +  + LF  L 
Sbjct: 574 YKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP 633

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             G+ P + TYNI+I   CK G +S   ++F ++      PD  T+  LI+
Sbjct: 634 LKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIR 684



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +I+  C+  KL +A      + + G  PN +T++ LI GLC +G++ E         L  
Sbjct: 227 MINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEA------LELVD 280

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           R+   G  PDL T N L+N  C  G+ +   ++  +++     P+AVT+  ++ ++
Sbjct: 281 RMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVM 336



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L ++  +P V ++NI+ G L K         LF+++   G  PD +TYNILI      G 
Sbjct: 632 LPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGD 691

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175
            +    ++  + R  F+ DA T   +I D+ ++ +
Sbjct: 692 ATKSVKLIEELKRCGFSVDASTIKMVI-DMLSDDK 725


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  197 bits (502), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 180/357 (50%), Gaps = 36/357 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++AL  F+ ML+M P  P +  F  +   + K K Y TVLSL ++++  G+  + YT 
Sbjct: 54  TLDDALSSFNRMLHMHPP-PSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTL 112

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N+LIN FC + RV+  F VL +IL+    PD  +FT+LIK LC E +I EA  LF K+  
Sbjct: 113 NVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIW 172

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + DV  Y TLINGLC+TGHT  A+ L   M  GN      C+PD + Y T+I  LCK
Sbjct: 173 EGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGN------CQPDVVVYGTLIHSLCK 226

Query: 249 EAGSAN-FLGFSCM----------------------ASFSALNKMAFYFPLVRVQCLCLN 285
           +      F  FS M                        +  +N +       ++    ++
Sbjct: 227 DRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAIS 286

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
              ++D LCK   +  A ++   + ++G+ P+VVTY  LI G C   +MDE         
Sbjct: 287 LTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEA------VK 340

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +F  +   G  P++++YN LIN +CKI R+     +F  +      P+ VT+ +LI 
Sbjct: 341 VFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIH 397



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 155/352 (44%), Gaps = 39/352 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + + N L   L     +  V +L   +  + + P+  +   +++  CK G V+    V
Sbjct: 247 PNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDV 306

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  + +S   PD VT+T+LI   C  S + EA  +F  +   GC  +VF+YNTLING C+
Sbjct: 307 VDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCK 366

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSA 266
                 A+ LFEEM            P+ +TY+T+I GLC      + +  F  M +   
Sbjct: 367 IERMDKAMYLFEEMCRQK------LIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQ 420

Query: 267 LNKMAFYFPLVRVQCLCLN------------------------FLCLIDGLCKISKLKIA 302
           +  +  Y  L+    LC N                        +  +IDG+C+  +L+ A
Sbjct: 421 IPDLVTYRILLDY--LCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDA 478

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
           R+LF +L   GL PNV TYNI+  GLC  G +DE         LF  ++      D  TY
Sbjct: 479 RDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATK------LFMEMDENACSADGCTY 532

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
           N +   F +    S    +   +L   F+ D  T T L+ +L  +   +  A
Sbjct: 533 NTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGMLSDDGLDQSEA 584



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 17/193 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++ IL   L K  H D  ++L K +  + L PD   Y I+I+  C+ G +     +
Sbjct: 422 PDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDL 481

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      P+  T+  +   LC    + EA  LF ++    C  D  TYNT+  G  R
Sbjct: 482 FSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLR 541

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
              T  A+ L EEM       G  C+   ++ +T++ G+  + G             S  
Sbjct: 542 NNETSRAIQLLEEML----ARGFSCD---VSTTTLLVGMLSDDGLDQ----------SEA 584

Query: 268 NKMAFYFPLVRVQ 280
           +K+   FP +R+Q
Sbjct: 585 HKLEDMFPHLRIQ 597


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 128/357 (35%), Positives = 182/357 (50%), Gaps = 36/357 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++AL  F+ ML+M P  P    F  L   +AK KHY TVLSL  +++  G+ PD YT 
Sbjct: 92  TLDDALSSFNRMLHMHPP-PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 150

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NILIN FC + R+ + F VL ++L+    PD  TF +LI+ LC E +I EA  LF K   
Sbjct: 151 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 210

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + DV TY TL+NGLC+ G+T  A+ L   M   N      C P+ I Y+TIID LCK
Sbjct: 211 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKN------CRPNVIAYNTIIDSLCK 264

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQC-LC--------LN------------- 285
           +   +  F  FS M +      +  Y  L+   C LC        LN             
Sbjct: 265 DRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVV 324

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  ++D LCK   + IA ++   + + G+ P+VVTY  L+ G C   +MDE         
Sbjct: 325 FSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEA------VK 378

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +F  +   G  P++ +YNILIN +C+I R+     +  ++       D VT+ +LI 
Sbjct: 379 VFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIH 435



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 137/299 (45%), Gaps = 24/299 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V ++N +   L K +      +LF  +   G+ PD +TYN LI+  C +    H   
Sbjct: 249 RPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTT 308

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++ S   P+ V F++++  LC E  I  A  +   +   G E DV TY  L++G C
Sbjct: 309 LLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHC 368

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A+ +F+ M +        C P+  +Y+ +I+G C+       +G         
Sbjct: 369 LRSEMDEAVKVFDTMVHKG------CVPNVRSYNILINGYCQIQRMDKAMGL-------- 414

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L +M+    +       + +  LI GLC + +L+ A  LF  +  +G +P++VTY IL+ 
Sbjct: 415 LEQMSLQGLIADT----VTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLD 470

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            LC      +  H     +L K +  + L  D+  YNI I+  C+ G + +   +F  +
Sbjct: 471 YLC------KNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNL 523



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 1/152 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ VFD M++ +   P V S+NIL     + +  D  + L ++++L GL  D  TYN 
Sbjct: 374 DEAVKVFDTMVH-KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 432

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C +GR+ H   +   ++ S   PD VT+  L+  LC    + EA  L   +    
Sbjct: 433 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 492

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
            + D+  YN  I+G+CR G    A +LF  ++
Sbjct: 493 LDADILVYNIAIDGMCRAGELEAARDLFSNLS 524



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 11/191 (5%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           V D M+  R   P V ++  L          D  + +F  +   G  P+  +YNILIN +
Sbjct: 344 VVDMMIK-RGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGY 402

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C++ R+     +L ++       D VT+ +LI  LC   R+  A ALF ++   G   D+
Sbjct: 403 CQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDL 462

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAG 251
            TY  L++ LC+  H   A+ L + +   N       + D + Y+  IDG+C+    EA 
Sbjct: 463 VTYRILLDYLCKNHHLAEAMVLLKAIEGSN------LDADILVYNIAIDGMCRAGELEAA 516

Query: 252 SANFLGFSCMA 262
              F   SC  
Sbjct: 517 RDLFSNLSCQG 527


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 126/360 (35%), Positives = 177/360 (49%), Gaps = 48/360 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ ML MR + PP+  FN +    AK KHY T +SL  RL L G+ PD  T NI
Sbjct: 41  DDAVSQFNRMLCMRHT-PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC MG+++ GF VL +IL+  + PD VT  +LIK LC + ++ +A     KL   G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +L+  +Y TLING+C+ G T  A+ L  ++       G + +P+   YSTIID LCK  
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRGAIKLLRKID------GRLTKPNVEMYSTIIDALCKYQ 213

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             +   G      FS +        +V        +  LI G C   KLK A  L   + 
Sbjct: 214 LVSEAYGL-----FSEMTVKGISADVV-------TYSTLIYGFCIEGKLKEAIGLLNEMV 261

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL------------------------- 345
              + PNV TYNIL+  LC +G++ E K    V L                         
Sbjct: 262 LKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK 321

Query: 346 ----LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               +F  ++  G+ PD++TY ILIN FCK   V     +F  +      P  VT++SLI
Sbjct: 322 KAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLI 381



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 165/331 (49%), Gaps = 25/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F  M     S   VT   +++G   + K  + +  L   + L  + P+ YTYNI
Sbjct: 216 SEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAI-GLLNEMVLKTINPNVYTYNI 274

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G+V     VL  +L++C  PD +T+++L+        + +A  +F  + + G
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV TY  LING C+      ALNLF+EM   N        P  +TYS++IDGLCK +
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN------MVPGIVTYSSLIDGLCK-S 387

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G   ++       +  +++M        V    + +  LIDGLCK   L  A  LF  + 
Sbjct: 388 GRIPYV-------WDLIDEMRDRGQPADV----ITYSSLIDGLCKNGHLDRAIALFNKMK 436

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
              + PN+ T+ IL+ GLC  G++ + +       +F+ L + G   ++YTYN++IN  C
Sbjct: 437 DQEIRPNIFTFTILLDGLCKGGRLKDAQE------VFQDLLTKGYHLNVYTYNVMINGHC 490

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G +     +  ++  +   P+A TF ++I
Sbjct: 491 KQGLLEEALTMLSKMEDNGCIPNAFTFETII 521



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 141/311 (45%), Gaps = 24/311 (7%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            S+  L   + K       + L ++++     P+   Y+ +I+  CK   VS  + +   
Sbjct: 165 VSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSE 224

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +     + D VT+++LI   C E ++ EA  L  ++ +     +V+TYN L++ LC+ G 
Sbjct: 225 MTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGK 284

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A ++   M           +PD ITYST++DG         FL +    +    N M
Sbjct: 285 VKEAKSVLAVM------LKACVKPDVITYSTLMDGY--------FLVYEVKKAQHVFNAM 330

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
           +    L+ V      +  LI+G CK   +  A  LF+ + +  ++P +VTY+ LI GLC 
Sbjct: 331 S----LMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G++        V+ L   +   G   D+ TY+ LI+  CK G +     +F ++     
Sbjct: 387 SGRI------PYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEI 440

Query: 391 TPDAVTFTSLI 401
            P+  TFT L+
Sbjct: 441 RPNIFTFTILL 451



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 28/257 (10%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R+L    TP  + F  ++           A +L  +L + G + D+ T N LIN  C  G
Sbjct: 49  RMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMG 108

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF--SCMASFSAL 267
                 ++  ++            PD +T +T+I GLC +      L F    +A    L
Sbjct: 109 QITFGFSVLAKILKRG------YPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQL 162

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N++++                LI+G+CKI   + A +L + +      PNV  Y+ +I  
Sbjct: 163 NQVSY--------------ATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDA 208

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC    + E       + LF  +   G+  D+ TY+ LI  FC  G++     +   ++ 
Sbjct: 209 LCKYQLVSEA------YGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVL 262

Query: 388 SCFTPDAVTFTSLIKIL 404
               P+  T+  L+  L
Sbjct: 263 KTINPNVYTYNILVDAL 279



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 2/148 (1%)

Query: 76  VFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           V+D +  MR    P  V +++ L   L K  H D  ++LF ++    + P+ +T+ IL++
Sbjct: 393 VWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLD 452

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK GR+     V   +L   +  +  T+  +I   C +  + EA  + +K+   GC  
Sbjct: 453 GLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIP 512

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEM 221
           + FT+ T+I  L +      A  L  +M
Sbjct: 513 NAFTFETIIIALFKKDENDKAEKLLRQM 540


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 191/348 (54%), Gaps = 29/348 (8%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           +ER +S     +  I  ++A+ +F  M++ RP  P V  F+ LF  +AKTK YD VL+L 
Sbjct: 57  RERLRSG----LVDIKADDAIDLFRDMIHSRP-LPTVIDFSRLFSAIAKTKQYDLVLALC 111

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           K++ L G+  + YT +I+INCFC+  ++   F  +G+I++  + P+ +TF++LI  LC E
Sbjct: 112 KQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLE 171

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
            R+ EA  L  ++   G + D+ T NTL+NGLC +G    A+ L ++M     E+G  C+
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV----EYG--CQ 225

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
           P+A+TY  +++ +CK   +A         +   L KM        ++   + +  +IDGL
Sbjct: 226 PNAVTYGPVLNVMCKSGQTA--------LAMELLRKMEER----NIKLDAVKYSIIIDGL 273

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK   L  A  LF  +   G+  N++TYNILI G CN G+ D+         L + +   
Sbjct: 274 CKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAK------LLRDMIKR 327

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + P++ T+++LI+ F K G++     +   ++     PD +T+TSLI
Sbjct: 328 KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLI 375



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 143/321 (44%), Gaps = 24/321 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +F++L     K         L K +   G+ PD  TY  LI+ FCK   +  
Sbjct: 327 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 386

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              ++  ++     P+  TF  LI   C  +RI +   LF K+ + G   D  TYNTLI 
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 446

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C  G   VA  LF+EM +          P+ +TY  ++DGLC    S   L       
Sbjct: 447 GFCELGKLNVAKELFQEMVSRK------VPPNIVTYKILLDGLCDNGESEKALEI----- 495

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F  + K      +         +  +I G+C  SK+  A +LF SLP  G+ P V TYNI
Sbjct: 496 FEKIEKSKMELDIGI-------YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNI 548

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +I GLC  G + E +      LLF+++   G  PD +TYNILI      G  +    +  
Sbjct: 549 MIGGLCKKGPLSEAE------LLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIE 602

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +    F+ DA T   +I +L
Sbjct: 603 ELKRCGFSVDASTIKMVIDML 623



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 156/348 (44%), Gaps = 47/348 (13%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  +     ++I+   L K    D   +LF  + + G+  +  TYNILI  FC  GR   
Sbjct: 257 RNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDD 316

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
           G  +L  +++    P+ VTF+ LI     E ++ EA  L  ++   G   D  TY +LI+
Sbjct: 317 GAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLID 376

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C+  H   A  + + M +        C+P+  T++ +I+G CK    AN +       
Sbjct: 377 GFCKENHLDKANQMVDLMVSKG------CDPNIRTFNILINGYCK----ANRID----DG 422

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
                KM+    L  V    + +  LI G C++ KL +A+ELFQ +    + PN+VTY I
Sbjct: 423 LELFRKMS----LRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 478

Query: 324 LIRGLCNDGQMDE-----------------------------TKHYETVFLLFKRLNSTG 354
           L+ GLC++G+ ++                                 +  + LF  L   G
Sbjct: 479 LLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 538

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + P + TYNI+I   CK G +S   ++F ++      PD  T+  LI+
Sbjct: 539 VKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIR 586



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +I+  C+  KL +A      + + G  PN +T++ LI GLC +G++ E         L  
Sbjct: 129 MINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEA------LELVD 182

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           R+   G  PDL T N L+N  C  G+ +   ++  +++     P+AVT+  ++ ++
Sbjct: 183 RMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVM 238



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 1/99 (1%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L ++  +P V ++NI+ G L K         LF+++   G  PD +TYNILI      G 
Sbjct: 534 LPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGD 593

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
            +    ++  + R  F+ DA T   +I D+ ++ R+ ++
Sbjct: 594 ATKSVKLIEELKRCGFSVDASTIKMVI-DMLSDGRLKKS 631


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 187/350 (53%), Gaps = 31/350 (8%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           +ER +S     I  I  ++A+ +F  M+  RP  P +  F+  F  +A+TK ++ VL   
Sbjct: 47  RERLRSG----IVDIKKDDAIALFQEMIRSRP-LPSLVDFSRFFSAIARTKQFNLVLDFC 101

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           K+L L G+  + YT NI+INCFC+  +    + VLG++++  + PD  TF +LIK L  E
Sbjct: 102 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 161

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
            ++ EA  L  ++   GC+ DV TYN+++NG+CR+G T +AL+L  +M   N       +
Sbjct: 162 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------VK 215

Query: 234 PDAITYSTIIDGLCKEAG-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
            D  TYSTIID LC++    A    F  M +    + +  Y  LVR             G
Sbjct: 216 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR-------------G 262

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LCK  K      L + +    ++PNV+T+N+L+     +G++ E         L+K + +
Sbjct: 263 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE------LYKEMIT 316

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            G+ P++ TYN L++ +C   R+S    +   ++ +  +PD VTFTSLIK
Sbjct: 317 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIK 366



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 154/317 (48%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN+L     K         L+K +   G+ P+  TYN L++ +C   R+S    +
Sbjct: 286 PNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNM 345

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++R+  +PD VTFTSLIK  C   R+ +   +F  +   G   +  TY+ L+ G C+
Sbjct: 346 LDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQ 405

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +G   +A  LF+EM +     GV+  PD +TY  ++DGLC        L       F  L
Sbjct: 406 SGKIKLAEELFQEMVS----HGVL--PDVMTYGILLDGLCDNGKLEKALEI-----FEDL 454

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K      +V        +  +I+G+CK  K++ A  LF SLP  G+ PNV+TY ++I G
Sbjct: 455 QKSKMDLGIVM-------YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISG 507

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G + E        +L +++   G  P+  TYN LI    + G +++   +   +  
Sbjct: 508 LCKKGSLSEAN------ILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS 561

Query: 388 SCFTPDAVTFTSLIKIL 404
             F+ DA +   +I +L
Sbjct: 562 CGFSADASSIKMVIDML 578


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 187/350 (53%), Gaps = 31/350 (8%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           +ER +S     I  I  ++A+ +F  M+  RP  P +  F+  F  +A+TK ++ VL   
Sbjct: 57  RERLRSG----IVDIKKDDAIALFQEMIRSRP-LPSLVDFSRFFSAIARTKQFNLVLDFC 111

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           K+L L G+  + YT NI+INCFC+  +    + VLG++++  + PD  TF +LIK L  E
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 171

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
            ++ EA  L  ++   GC+ DV TYN+++NG+CR+G T +AL+L  +M   N       +
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------VK 225

Query: 234 PDAITYSTIIDGLCKEAG-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
            D  TYSTIID LC++    A    F  M +    + +  Y  LVR             G
Sbjct: 226 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR-------------G 272

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LCK  K      L + +    ++PNV+T+N+L+     +G++ E         L+K + +
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE------LYKEMIT 326

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            G+ P++ TYN L++ +C   R+S    +   ++ +  +PD VTFTSLIK
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIK 376



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 155/321 (48%), Gaps = 24/321 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +FN+L     K         L+K +   G+ P+  TYN L++ +C   R+S 
Sbjct: 292 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSE 351

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +L  ++R+  +PD VTFTSLIK  C   R+ +   +F  +   G   +  TY+ L+ 
Sbjct: 352 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C++G   +A  LF+EM +     GV+  PD +TY  ++DGLC        L       
Sbjct: 412 GFCQSGKIKLAEELFQEMVS----HGVL--PDVMTYGILLDGLCDNGKLEKALEI----- 460

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F  L K      +V        +  +I+G+CK  K++ A  LF SLP  G+ PNV+TY +
Sbjct: 461 FEDLQKSKMDLGIVM-------YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +I GLC  G + E        +L +++   G  P+  TYN LI    + G +++   +  
Sbjct: 514 MISGLCKKGSLSEAN------ILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIE 567

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +    F+ DA +   +I +L
Sbjct: 568 EMKSCGFSADASSIKMVIDML 588


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/354 (35%), Positives = 183/354 (51%), Gaps = 44/354 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL  F  ML MR + PP+  FN +    AK KHY TV+SL +RL L  + PD +T NI
Sbjct: 45  DDALFQFHRMLCMRHT-PPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNI 103

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC +G+++  F VL +IL+  + PD VT T+LIK LC + ++ +A     KL   G
Sbjct: 104 LINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQG 163

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
             LD  +Y TLING+C+ G T  A+ L   +       G + EP+ + Y+TIID LCK  
Sbjct: 164 FRLDQVSYGTLINGVCKIGETRAAIQLLRRID------GRLTEPNVVMYNTIIDCLCKRK 217

Query: 249 --------------EAGSANFLGFSC-MASFSALNKMAFYFPLVRVQCL-CLN-----FL 287
                         +  SAN + +S  +  F  + K+      +    L  +N     + 
Sbjct: 218 LVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYN 277

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L+D L K  K+K A+ +   + +  L PNV+TYN LI G          KH      +F
Sbjct: 278 TLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGY--------AKH------VF 323

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +   G+ PD+++YNI+IN  CKI RV     ++  +      P+ VT+ SLI
Sbjct: 324 NAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLI 377



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 163/348 (46%), Gaps = 50/348 (14%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R + P V  +N +  CL K K      +LF  +++ G+  +  TY+ +I+ FC +G+
Sbjct: 194 IDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGK 253

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA-------------------- 180
           ++     L  ++     PD   + +L+  L  E ++ EA                     
Sbjct: 254 LTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNT 313

Query: 181 -------ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
                   +F  + + G   DV++YN +IN LC+      ALNL++EM   N        
Sbjct: 314 LIDGYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKN------MV 367

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
           P+ +TY+++IDGLCK +G  ++       ++  +++M        V    + +  LI+GL
Sbjct: 368 PNTVTYNSLIDGLCK-SGRISY-------AWDLIDEMHDRGHHANV----ITYNSLINGL 415

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK  +L  A  L   +   G+ P++ T NIL+ GL   G     K  +    LF+ L   
Sbjct: 416 CKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKG-----KRLKNAQGLFQDLLDK 470

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G  P++YTYNI+I   CK G +   + +  ++  S  +P+A+TF  +I
Sbjct: 471 GYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIII 518



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 123/292 (42%), Gaps = 66/292 (22%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++N L    AK         +F  + L G+ PD ++YNI+IN  CK+ RV     
Sbjct: 305 KPNVITYNTLIDGYAK--------HVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALN 356

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   + +    P+ VT+ SLI  LC   RI  A  L  ++   G   +V TYN+LINGLC
Sbjct: 357 LYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLC 416

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A+ L  +M +         +PD  T + ++ GL                    
Sbjct: 417 KNGQLDKAIALINKMKDQG------IQPDMYTLNILLHGL-------------------- 450

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                                     LCK  +LK A+ LFQ L   G  PNV TYNI+I 
Sbjct: 451 --------------------------LCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIY 484

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           G C +G +DE       + L  ++  +G  P+  T+ I+I    + G     
Sbjct: 485 GHCKEGLLDEA------YALQSKMEDSGCSPNAITFKIIICALLEKGETDKA 530



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 24/256 (9%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R+L    TP  + F  ++             +L  +L +   + D FT N LIN  C  G
Sbjct: 53  RMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLG 112

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
              +A ++  ++     ++G   +PD +T +T+I GLC +      L F           
Sbjct: 113 QINLAFSVLSKIL----KWGY--QPDTVTLTTLIKGLCLKGQVKKALHFHDKL------- 159

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           +A  F L +V     ++  LI+G+CKI + + A +L + +      PNVV YN +I  LC
Sbjct: 160 LAQGFRLDQV-----SYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLC 214

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
               + E  +      LF  ++  G+  ++ TY+ +I+ FC +G+++        ++   
Sbjct: 215 KRKLVSEACN------LFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKA 268

Query: 390 FTPDAVTFTSLIKILE 405
             PD   + +L+  L 
Sbjct: 269 INPDVYIYNTLVDALH 284



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN-CFCKMGRVS 142
           R     V ++N L   L K    D  ++L  ++   G+ PD YT NIL++   CK  R+ 
Sbjct: 399 RGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLK 458

Query: 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
           +   +   +L   + P+  T+  +I   C E  + EA AL +K+   GC  +  T+  +I
Sbjct: 459 NAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIII 518

Query: 203 NGLCRTGHTIVALNLFEEM 221
             L   G T  A  L  EM
Sbjct: 519 CALLEKGETDKAEKLLCEM 537


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 189/358 (52%), Gaps = 44/358 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F+ +L  R + PP   FN + G L K+KHY TVL L +++   G+ P+    NI
Sbjct: 67  DDAVSLFNRLLR-RNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 125

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC++G +   F V  +IL+  + PD +TFT+LIK LC + +I +A     K+   G
Sbjct: 126 LINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALG 185

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-E 249
              D  +Y TLI+GLC+ G T  AL+L + + +GN     + +P+ + Y+TIID +CK +
Sbjct: 186 FHFDQISYGTLIHGLCKVGETRAALDLLQRV-DGN-----LVQPNVVMYNTIIDSMCKVK 239

Query: 250 AGSANFLGFSCMAS---------FSAL-----------------NKMAFYFPLVRVQCLC 283
             +  F  FS M S         +SAL                 NKM     L  ++   
Sbjct: 240 LVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMI----LENIKPDV 295

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             F  L++  CK  K+K  + +F  + + G+ PN VTYN L+ G C   ++++ K     
Sbjct: 296 YTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKS---- 351

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +F  +   G+ PD+ +Y+I+IN FCKI +      +F  +      PD VT++SLI
Sbjct: 352 --IFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLI 407



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 161/331 (48%), Gaps = 25/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  +F  M++   S P V +++ L          +  + LF ++ L  + PD YT+NI
Sbjct: 242 NEAFDLFSEMISKGIS-PDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNI 300

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N FCK G++  G  V   +++    P+ VT+ SL+   C    + +A ++F  +   G
Sbjct: 301 LVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG 360

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ +Y+ +ING C+      A+NLF+EM   N        PD +TYS++IDGL K  
Sbjct: 361 VNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKN------IIPDVVTYSSLIDGLSKSG 414

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             +  L          +       P +R       +  ++D LCKI ++  A  L   L 
Sbjct: 415 RISYALQLVDQMHDRGVP------PTIRT------YNSILDALCKIHQVDKAIALLTKLK 462

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ PN+ TY+ILI+GLC  G++++ +       +F+ L   G   ++ TY I+I  FC
Sbjct: 463 DKGIQPNMYTYSILIKGLCQSGKLEDARK------VFEGLLVKGHNLNVDTYTIMIQGFC 516

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             G  +    +  ++  +   PDA T+  +I
Sbjct: 517 VEGLFNEALALLSKMEDNGCIPDAKTYEIII 547



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 149/326 (45%), Gaps = 24/326 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N +   + K K  +    LF  +   G+ PD  TY+ LI+ FC +G+++    
Sbjct: 222 QPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAID 281

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  +++     PD  TF  L+   C + ++ E   +F  +   G + +  TYN+L++G C
Sbjct: 282 LFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC 341

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A ++F  MA G    GV   PD  +YS +I+G CK            M  F  
Sbjct: 342 LVKEVNKAKSIFNTMAQG----GV--NPDIQSYSIMINGFCKIKKFD-----EAMNLFKE 390

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +++      +V        +  LIDGL K  ++  A +L   +   G+ P + TYN ++ 
Sbjct: 391 MHRKNIIPDVV-------TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILD 443

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC   Q+D+         L  +L   G+ P++YTY+ILI   C+ G++     +F  +L
Sbjct: 444 ALCKIHQVDKA------IALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLL 497

Query: 387 PSCFTPDAVTFTSLIKILEINSFFRQ 412
                 +  T+T +I+   +   F +
Sbjct: 498 VKGHNLNVDTYTIMIQGFCVEGLFNE 523



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 130/298 (43%), Gaps = 35/298 (11%)

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           +Y+     F     V     +  R+LR   TP A  F  ++  L           L  K+
Sbjct: 52  SYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKM 111

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G + ++   N LIN  C+ G    A ++F ++     + G V  PD IT++T+I GL
Sbjct: 112 EFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKIL----KMGYV--PDTITFTTLIKGL 165

Query: 247 C-KEAGSANFLGFSCMASFSALNKMAFYFPLVR----------------------VQCLC 283
           C K      FL    + +         Y  L+                       VQ   
Sbjct: 166 CLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNV 225

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           + +  +ID +CK+  +  A +LF  +   G+ P+VVTY+ LI G C  G++++       
Sbjct: 226 VMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDA------ 279

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             LF ++    + PD+YT+NIL+N FCK G++  G  +F  ++     P+ VT+ SL+
Sbjct: 280 IDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLM 337



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 7/179 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F  M + +   P V +++ L   L+K+      L L  +++  G+ P   TYN 
Sbjct: 382 DEAMNLFKEM-HRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNS 440

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++  CK+ +V     +L ++      P+  T++ LIK LC   ++ +A  +F  L V G
Sbjct: 441 ILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKG 500

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
             L+V TY  +I G C  G    AL L  +M + NG     C PDA TY  II  L K+
Sbjct: 501 HNLNVDTYTIMIQGFCVEGLFNEALALLSKMED-NG-----CIPDAKTYEIIILSLFKK 553



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 14/183 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL + D M + R   P + ++N +   L K    D  ++L  +L   G+ P+ YTY+ILI
Sbjct: 419 ALQLVDQMHD-RGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILI 477

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              C+ G++     V   +L      +  T+T +I+  C E    EA AL +K+   GC 
Sbjct: 478 KGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCI 537

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM-ANG------------NGEFGVVCEPDAITY 239
            D  TY  +I  L +     +A  L  EM A G              E+ V  EP  +T 
Sbjct: 538 PDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQIAIWFQKKKEYDVSSEPKTLTE 597

Query: 240 STI 242
            ++
Sbjct: 598 QSV 600



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 6/103 (5%)

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  LF  L R    P    +N ++      G + ++KHY TV  L +++   G+ P+L  
Sbjct: 69  AVSLFNRLLRRNTTPPAFEFNKIL------GSLVKSKHYHTVLYLSQKMEFRGIKPNLVN 122

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            NILINCFC++G +   F +F +IL   + PD +TFT+LIK L
Sbjct: 123 CNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGL 165


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/350 (33%), Positives = 187/350 (53%), Gaps = 31/350 (8%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           +ER +S     I  I  ++A+ +F  M+  RP  P +  F+  F  +A+TK ++ VL   
Sbjct: 57  RERLRSG----IVDIKKDDAIALFQEMIRSRP-LPSLVDFSRFFSAIARTKQFNLVLDFC 111

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           K+L L G+  + YT NI+INCFC+  +    + VLG++++  + PD  TF +LIK L  E
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 171

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
            ++ EA  L  ++   GC+ DV TYN+++NG+CR+G T +AL+L  +M   N       +
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------VK 225

Query: 234 PDAITYSTIIDGLCKEAG-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
            D  TYSTIID LC++    A    F  M +    + +  Y  LVR             G
Sbjct: 226 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR-------------G 272

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LCK  K      L + +    ++PNV+T+N+L+     +G++ E         L+K + +
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE------LYKEMIT 326

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            G+ P++ TYN L++ +C   R+S    +   ++ +  +PD VTFTSLIK
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIK 376



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 155/321 (48%), Gaps = 24/321 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +FN+L     K         L+K +   G+ P+  TYN L++ +C   R+S 
Sbjct: 292 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSE 351

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +L  ++R+  +PD VTFTSLIK  C   R+ +   +F  +   G   +  TY+ L+ 
Sbjct: 352 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C++G   +A  LF+EM +     GV+  PD +TY  ++DGLC        L       
Sbjct: 412 GFCQSGKIKLAEELFQEMVS----HGVL--PDVMTYGILLDGLCDNGKLEKALEI----- 460

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F  L K      +V        +  +I+G+CK  K++ A  LF SLP  G+ PNV+TY +
Sbjct: 461 FEDLQKSKMDLGIVM-------YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +I GLC  G + E        +L +++   G  P+  TYN LI    + G +++   +  
Sbjct: 514 MISGLCKKGSLSEAN------ILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIE 567

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +    F+ DA +   +I +L
Sbjct: 568 EMKSCGFSADASSIKMVIDML 588


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/357 (34%), Positives = 183/357 (51%), Gaps = 36/357 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++AL +F+ ML MRP  P +  F+ L   + + KHY TVLSL+K+++  G+  + YT 
Sbjct: 34  TIDDALSLFNRMLRMRPP-PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTL 92

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NILIN FC + R+   F VLG IL+  + P   TFT+LI+ LC E +I EA  LF K+  
Sbjct: 93  NILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTG 152

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + DV TY TLINGLC+ G+T  A+     M   N      C P  + YSTIID LCK
Sbjct: 153 EGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRN------CRPTVVVYSTIIDSLCK 206

Query: 249 EAGSANFLG-FSCMAS---------FSAL-----------NKMAFYFPLVRVQCL--CLN 285
           +      L  FS M +         +S+L             +  ++ ++  + +   L 
Sbjct: 207 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 266

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  L+D LCK   +  A  +   + ++ L P+VVTYN L+ G C   +M +T +      
Sbjct: 267 FNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVN------ 320

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +F  +   G  P + +Y  LIN +CKI  +     +F  +      PD VT+ +LI 
Sbjct: 321 VFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIH 377



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 162/377 (42%), Gaps = 60/377 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +F  ML  +   P   +++ L   L    H+   + LF  +    + PD+ T+N L
Sbjct: 212 EALSLFSDML-AKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTL 270

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES----------------- 174
           ++  CK G V     V+  +++S   PD VT+ SL+   C  S                 
Sbjct: 271 VDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGC 330

Query: 175 -----------------RIMEAA-ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
                            +IM+ A  LF ++   G   D  TYNTLI+GLC  G    A+ 
Sbjct: 331 VPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIA 390

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           LF EM      +G +  PD +TY  + D LCK    A  +    +   + L+     + +
Sbjct: 391 LFHEMV----VYGQI--PDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSI 444

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
           V            +DG+C+  +L+ AR+LF  L   GL P+V TY I+I GLC  G + E
Sbjct: 445 V------------MDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAE 492

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                    LF  ++  G  P+  TYN++   F +         +F  +L   F+ D  T
Sbjct: 493 ASK------LFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVST 546

Query: 397 FTSLIKILEINSFFRQV 413
            T L+++L  +   + V
Sbjct: 547 TTLLVEMLSDDGLDQSV 563



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 24/264 (9%)

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     +  R+LR    P  V F+ L+  +          +L+ ++  FG   + +T N 
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNI 94

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LIN  C       A ++  ++        +  +P   T++T+I GLC E      L    
Sbjct: 95  LINSFCHLNRLGFAFSVLGDI------LKLGYQPSTATFTTLIRGLCVEGKIGEALQL-- 146

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
              F  +    F       Q   L +  LI+GLCK+     A    +S+ +    P VV 
Sbjct: 147 ---FDKMTGEGF-------QPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVV 196

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+ +I  LC D Q+ E         LF  + + G+ P+ +TY+ LI+  C +G       
Sbjct: 197 YSTIIDSLCKDRQLTEA------LSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIR 250

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           +F  ++     PD +TF +L+  L
Sbjct: 251 LFYAMIHRKIMPDQLTFNTLVDAL 274



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 6/107 (5%)

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
           ++ +  A  LF  + R    P++V ++ L+  +         KHY TV  L+K+++S G+
Sbjct: 32  VNTIDDALSLFNRMLRMRPPPSIVDFSKLLTSIT------RMKHYSTVLSLYKQMDSFGI 85

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             + YT NILIN FC + R+   F + G IL   + P   TFT+LI+
Sbjct: 86  PHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIR 132


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/356 (34%), Positives = 175/356 (49%), Gaps = 36/356 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++ L  F+ ML   P  PP+  F+ L G + +  HY T +SLF +L+  G+ P   T 
Sbjct: 35  TVDDTLLSFNRMLRKHPP-PPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATL 93

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            ILINC+C    +S  F +LG IL+  F P+ VTF +LI   C    + +A A    L  
Sbjct: 94  TILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMA 153

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G  LD F+Y +LINGLC+ G T  AL L ++M         +  P+ ITYST+IDGLCK
Sbjct: 154 KGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEED------LVRPNLITYSTVIDGLCK 207

Query: 249 EAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLC----------------------LN 285
           +   A+ L  FS + S   L  +  Y  L+   C                          
Sbjct: 208 DRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYT 267

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  L+D LCK  ++  A+ +F  + + G  P++VTYN L+ G C    + E +       
Sbjct: 268 FNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARE------ 321

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LF R+   GL PD+  YN+LIN +CKI  V    V+F  I      P+  T+ SLI
Sbjct: 322 LFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLI 377



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 151/357 (42%), Gaps = 66/357 (18%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP + +++ +   L K +     L LF  +   G+  D   YN LI+  C +G+      
Sbjct: 192 RPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATR 251

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++R    PD  TF  L+  LC E RI+EA  +F  +   G + D+ TYN L+ G C
Sbjct: 252 LLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFC 311

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            + +   A  LF  M           EPD + Y+ +I+G CK                  
Sbjct: 312 LSNNVSEARELFNRMVKRG------LEPDVLNYNVLINGYCK---------------IDM 350

Query: 267 LNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +++    F  +R + L  N   +  LIDGLCK+ ++   +EL   +   G  P++VTYNI
Sbjct: 351 VDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNI 410

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY----------------------- 360
            +   C      ++K YE    LF+++   G++PD Y                       
Sbjct: 411 FLDAFC------KSKPYEKAISLFRQI-VQGIWPDFYMYDVIVENFCKGEKLKIAEEALQ 463

Query: 361 ------------TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
                       TY I+IN  CK         +  ++  +   PDAVTF ++I  L+
Sbjct: 464 HLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQ 520



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 111/295 (37%), Gaps = 61/295 (20%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  VF  M+  R  +P + ++N L      + +      LF R+   GL PD   YN+L
Sbjct: 283 EAQGVFAVMMK-RGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVL 341

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN +CK+  V    V+   I      P+  T+ SLI  LC   R+     L  ++   G 
Sbjct: 342 INGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQ 401

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ TYN  ++  C++     A++LF ++  G         PD   Y  I++  CK   
Sbjct: 402 SPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQG-------IWPDFYMYDVIVENFCKG-- 452

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                         KLKIA E  Q L  
Sbjct: 453 ---------------------------------------------EKLKIAEEALQHLLI 467

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            G  PNV TY I+I  LC D   DE         L  +++     PD  T+  +I
Sbjct: 468 HGCCPNVRTYTIMINALCKDCSFDEA------MTLLSKMDDNDCPPDAVTFETII 516



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 114/268 (42%), Gaps = 24/268 (8%)

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           K   V    +   R+LR    P    F  L+  +        A +LF++L   G    + 
Sbjct: 32  KFHTVDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIA 91

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           T   LIN  C   H   A +L   +        +  +P+ +T++T+I+G C     +  +
Sbjct: 92  TLTILINCYCHQAHLSFAFSLLGTI------LKMGFQPNMVTFNTLINGFCINGMVSKAM 145

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
            F        L+ MA  +PL        ++  LI+GLCK  + + A +L Q +    + P
Sbjct: 146 AFR-------LDLMAKGYPLDE-----FSYGSLINGLCKNGQTRDALQLLQKMEEDLVRP 193

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           N++TY+ +I GLC D  + +         LF  + S G+  D+  YN LI+  C +G+  
Sbjct: 194 NLITYSTVIDGLCKDRLIADA------LRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWR 247

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               +   ++     PD  TF  L+  L
Sbjct: 248 EATRLLTMMVRGNINPDDYTFNILVDAL 275



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 1/138 (0%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P + ++NI      K+K Y+  +SLF+++ + G++PD Y Y++++  FCK  ++  
Sbjct: 399 RGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQI-VQGIWPDFYMYDVIVENFCKGEKLKI 457

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
               L  +L     P+  T+T +I  LC +    EA  L +K+    C  D  T+ T+I 
Sbjct: 458 AEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIG 517

Query: 204 GLCRTGHTIVALNLFEEM 221
            L     T  A  L  EM
Sbjct: 518 ALQERNETDKAEKLRLEM 535



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 41/78 (52%)

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G +    HY T   LF +L+S G+ P + T  ILINC+C    +S  F + G IL   F 
Sbjct: 63  GAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQ 122

Query: 392 PDAVTFTSLIKILEINSF 409
           P+ VTF +LI    IN  
Sbjct: 123 PNMVTFNTLINGFCINGM 140


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  196 bits (497), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 183/359 (50%), Gaps = 36/359 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T +EAL  F+ ML+ +P  P    FN L   +AKTKH+ T+LSL ++++  G+ PD YT 
Sbjct: 50  TLDEALSTFNRMLHKQPP-PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            I+IN  C + RV   F  L +IL+    PDA TFT+LI+ LC E +I EA  LF K+  
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + +V TY TLINGLC+ G+T  A+ L   M  GN      C+P+ + +ST+ID LCK
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPNVVVFSTLIDSLCK 222

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQC-LC--------LNFLC---------- 288
           +   +  F  FS M +      +  Y  L+   C LC        +N +           
Sbjct: 223 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 282

Query: 289 ---LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
              ++D LCK   +  A ++   +   G+ PNVVTYN L+ G C   ++D          
Sbjct: 283 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVD------VAVK 336

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +F  +       ++ +YN LIN +CKI  V     +F  +     TP+ VT+ +LI  L
Sbjct: 337 VFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGL 395



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 155/327 (47%), Gaps = 27/327 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M+    S P + ++N L   L K   +  V +L   +  + + PD +T N +
Sbjct: 228 EAFNIFSEMITKGIS-PNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G V+    V+  ++     P+ VT+ +L+   C  + +  A  +F  +    C
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 346

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +V +YNTLING C+      A+ LFEEM+           P+ +TY+T+I GLC    
Sbjct: 347 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE------LTPNTVTYNTLIHGLCHVGR 400

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCL-NFLCLIDGLCKISKLKIARELFQSLP 310
             + +               F+  + R Q   L  +  L D LCK   L  A  L +++ 
Sbjct: 401 LQDAISL-------------FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIE 447

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            +   P++  Y  ++ G+C  G++++ +       LF  L+S GL P+++TYNI+I+  C
Sbjct: 448 GSNWDPDIQIYTTILDGMCRAGELEDARD------LFSNLSSKGLQPNVWTYNIMIHGLC 501

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTF 397
           K G ++    +F  +  +  +P+  T+
Sbjct: 502 KQGLLAEASKLFSEMNKNGCSPNDCTY 528



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 143/342 (41%), Gaps = 60/342 (17%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  V D M++ R   P V ++N L          D  + +F  +       +  +YN L
Sbjct: 298 EAHDVVDMMIH-RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTL 356

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN +CK+  V     +   + R   TP+ VT+ +LI  LC   R+ +A +LF ++   G 
Sbjct: 357 INGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ 416

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ TY TL + LC+  H   A+ L + +   N       +PD   Y+TI+DG+C+ AG
Sbjct: 417 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSN------WDPDIQIYTTILDGMCR-AG 469

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                         +L+ AR+LF +L  
Sbjct: 470 ----------------------------------------------ELEDARDLFSNLSS 483

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL PNV TYNI+I GLC  G + E         LF  +N  G  P+  TYN++   F +
Sbjct: 484 KGLQPNVWTYNIMIHGLCKQGLLAEASK------LFSEMNKNGCSPNDCTYNLITRGFLR 537

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
                    +   +L   F+ D  T T L+ +L  +   + V
Sbjct: 538 NNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSV 579



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 126/288 (43%), Gaps = 25/288 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ VFD M++ +     V S+N L     K +  D  + LF+ ++   L P+  TYN LI
Sbjct: 334 AVKVFDTMVH-KDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLI 392

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  C +GR+     +   ++     PD VT+ +L   LC    + +A AL   +     +
Sbjct: 393 HGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWD 452

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+  Y T+++G+CR G    A +LF  +++         +P+  TY+ +I GLCK+   
Sbjct: 453 PDIQIYTTILDGMCRAGELEDARDLFSNLSSKG------LQPNVWTYNIMIHGLCKQ--- 503

Query: 253 ANFLGFSCMAS--FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
               G    AS  FS +NK            +   FL   + L  I       EL + + 
Sbjct: 504 ----GLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI-------ELLEEML 552

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHY--ETVFLLFKRLNSTGLF 356
             G   +V T  +L+  L +DG     K    + V L  + L  T LF
Sbjct: 553 ARGFSVDVSTTTLLVGMLSDDGLDQSVKQILCKIVILYERNLGETLLF 600



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 7/178 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F+ M + +   P   ++N L   L         +SLF  +   G  PD  TY  
Sbjct: 367 DKAMYLFEEM-SRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 425

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L +  CK   +     +L  I  S + PD   +T+++  +C    + +A  LF+ L   G
Sbjct: 426 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 485

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            + +V+TYN +I+GLC+ G    A  LF EM N NG     C P+  TY+ I  G  +
Sbjct: 486 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEM-NKNG-----CSPNDCTYNLITRGFLR 537


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 183/359 (50%), Gaps = 36/359 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T +EAL  F+ ML+ +P  P    FN L   +AKTKH+ T+LSL ++++  G+ PD YT 
Sbjct: 50  TLDEALSTFNRMLHKQPP-PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            I+IN  C + RV   F  L +IL+    PDA TFT+LI+ LC E +I EA  LF K+  
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + +V TY TLINGLC+ G+T  A+ L   M  GN      C+P+ + +ST+ID LCK
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPNVVVFSTLIDSLCK 222

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQC-LC--------LNFLC---------- 288
           +   +  F  FS M +      +  Y  L+   C LC        +N +           
Sbjct: 223 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 282

Query: 289 ---LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
              ++D LCK   +  A ++   +   G+ PNVVTYN L+ G C   ++D          
Sbjct: 283 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVD------VAVK 336

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +F  +       ++ +YN LIN +CKI  V     +F  +     TP+ VT+ +LI  L
Sbjct: 337 VFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGL 395



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 155/327 (47%), Gaps = 27/327 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M+    S P + ++N L   L K   +  V +L   +  + + PD +T N +
Sbjct: 228 EAFNIFSEMITKGIS-PNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G V+    V+  ++     P+ VT+ +L+   C  + +  A  +F  +    C
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 346

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +V +YNTLING C+      A+ LFEEM+           P+ +TY+T+I GLC    
Sbjct: 347 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE------LTPNTVTYNTLIHGLCHVGR 400

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCL-NFLCLIDGLCKISKLKIARELFQSLP 310
             + +               F+  + R Q   L  +  L D LCK   L  A  L +++ 
Sbjct: 401 LQDAISL-------------FHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIE 447

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            +   P++  Y  ++ G+C  G++++ +       LF  L+S GL P+++TYNI+I+  C
Sbjct: 448 GSNWDPDIQIYTTILDGMCRAGELEDARD------LFSNLSSKGLQPNVWTYNIMIHGLC 501

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTF 397
           K G ++    +F  +  +  +P+  T+
Sbjct: 502 KQGLLAEASKLFSEMNKNGCSPNDCTY 528



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 143/342 (41%), Gaps = 60/342 (17%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  V D M++ R   P V ++N L          D  + +F  +       +  +YN L
Sbjct: 298 EAHDVVDMMIH-RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTL 356

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN +CK+  V     +   + R   TP+ VT+ +LI  LC   R+ +A +LF ++   G 
Sbjct: 357 INGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ 416

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ TY TL + LC+  H   A+ L + +   N       +PD   Y+TI+DG+C+ AG
Sbjct: 417 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSN------WDPDIQIYTTILDGMCR-AG 469

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                         +L+ AR+LF +L  
Sbjct: 470 ----------------------------------------------ELEDARDLFSNLSS 483

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL PNV TYNI+I GLC  G + E         LF  +N  G  P+  TYN++   F +
Sbjct: 484 KGLQPNVWTYNIMIHGLCKQGLLAEASK------LFSEMNKNGCSPNDCTYNLITRGFLR 537

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
                    +   +L   F+ D  T T L+ +L  +   + V
Sbjct: 538 NNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSV 579



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 7/178 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F+ M + +   P   ++N L   L         +SLF  +   G  PD  TY  
Sbjct: 367 DKAMYLFEEM-SRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 425

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L +  CK   +     +L  I  S + PD   +T+++  +C    + +A  LF+ L   G
Sbjct: 426 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 485

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            + +V+TYN +I+GLC+ G    A  LF EM N NG     C P+  TY+ I  G  +
Sbjct: 486 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEM-NKNG-----CSPNDCTYNLITRGFLR 537


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 131/407 (32%), Positives = 192/407 (47%), Gaps = 78/407 (19%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T + A+  F+ ML M+P  P    FN L   +AK KH+ T+LSL  +++  G+ P+ YT 
Sbjct: 41  TIDGAISSFNRMLRMQPP-PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTL 99

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           +ILIN FC + RV   F VL +IL+    PD  TFT+LI+ +C E +I EA  LF K+  
Sbjct: 100 HILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIG 159

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   DV TY TLINGLC+ G+T  A+ L   M   N      C+P+   Y+TIID LCK
Sbjct: 160 EGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKN------CQPNVFAYNTIIDSLCK 213

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQC-LC---------------------LN 285
           +   +  F  FS M +      +  Y  L+   C LC                     ++
Sbjct: 214 DRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVS 273

Query: 286 FLCLIDGLCK-----------------------------------ISKLKIARELFQSLP 310
           F  ++D LCK                                   +S++  A ++F ++ 
Sbjct: 274 FNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMV 333

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHY-------------ETVFLLFKRLNSTGLFP 357
             G MPNV++YN LI G C   ++D+  HY             +    +F  +   G  P
Sbjct: 334 CKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMP 393

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++ +YN LIN +CKI R+     +FG +      PD VT+++LI  L
Sbjct: 394 NVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGL 440



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 162/384 (42%), Gaps = 62/384 (16%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  S    +   CK   EG +T     EA  V D M+  R   P V ++  L        
Sbjct: 270 DVVSFNTVVDALCK---EGKVT-----EAHDVVDKMIQ-RGVEPNVVTYTALMDGHCLLS 320

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
             D  + +F  +   G  P+  +YN LIN +CK+ R+                  A+ +T
Sbjct: 321 EMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRID----------------KAIHYT 364

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
            L+   C    + EA  +F  +   GC  +V +YNTLING C+      A+ LF EM   
Sbjct: 365 XLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQ 424

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQC-- 281
                    PD +TYST+I GLC      + +  F  M + S +  +  Y  L+   C  
Sbjct: 425 E------LIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKN 478

Query: 282 ---------------------LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                                + +N +  IDG+C+  +L+ AR+LF +L   GL P+V T
Sbjct: 479 RYLAEAMALLKAIEGSNLDPDIQVNNIA-IDGMCRAGELEAARDLFSNLSSKGLQPDVWT 537

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+I+I GLC  G +DE         LF+ ++  G   +   YN +   F +    S    
Sbjct: 538 YSIMINGLCRRGLLDEASK------LFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQ 591

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           +   ++   F+ DA T T  +K+L
Sbjct: 592 LLQEMVARGFSADASTMTLFVKML 615


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  194 bits (492), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 185/364 (50%), Gaps = 55/364 (15%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKT-KHYDTVLSLFKRLNLTGLFPDRYTYN 129
           ++AL  F++ML+ +P  P +  F  L   + K  ++YDTV+SL K++ L GL P+ YT +
Sbjct: 79  DDALASFNHMLHRKP-LPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLS 137

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           ILINCF  + RV   F VL +I++    P  VTFT+LI  LC   +  +A  LF  +   
Sbjct: 138 ILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVAR 197

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           GC  DV+TY T+INGLC+ G T  A  L ++M          C+P+ +TYSTIID   K+
Sbjct: 198 GCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAG------CQPNVVTYSTIIDSHRKD 251

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC---LNFLCLIDGLCKISKLKIARELF 306
                            +N+    F  ++V+ +      +  LI GLC  S+ K A  L 
Sbjct: 252 ---------------RRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALL 296

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH----------------YETVFL----- 345
             +    +MP++VT+N+L+  +C +G++ E +                 Y ++       
Sbjct: 297 NEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLR 356

Query: 346 --------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   LF  + + G  PD+++YNILIN +CK+ R+     +F  ++    TP+ V++
Sbjct: 357 SEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSY 416

Query: 398 TSLI 401
            +LI
Sbjct: 417 NTLI 420



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 155/357 (43%), Gaps = 52/357 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEAL +F YM  ++   P + ++N L   L     +    +L   +    + PD  T+N+
Sbjct: 255 NEALDIFSYM-KVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNV 313

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G+VS    VL  +      PD VT++SL+      S ++EA  LF  +   G
Sbjct: 314 LVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKG 373

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM---------------ANGNGEFGVVCE-- 233
           C+ DVF+YN LING C+      A  LF EM                +G  + G + E  
Sbjct: 374 CKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREAR 433

Query: 234 ------------PDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRV 279
                       P+  TYS ++DG CK+   G A  L  +  +++S  N + +       
Sbjct: 434 NLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNI----- 488

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                    LID +CK   L+ AR+LF  L   GL PN   Y  +I GLC +G +DE   
Sbjct: 489 ---------LIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDE--- 536

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                  F+ +   G  PD  +YN++I  F      S    + G +    F  D  T
Sbjct: 537 ---ALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIADVGT 590



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 102/242 (42%), Gaps = 35/242 (14%)

Query: 169 DLCAESRIMEAAALFTKL---RVFGCELDVFTYNTLINGLCRTGH---TIVALNLFEEMA 222
           D C+   I +A A F  +   +   C   +  +  L++ + + G    T+++L    E+A
Sbjct: 71  DACSFRNIDDALASFNHMLHRKPLPC---IIQFTKLLSAIVKMGQYYDTVISLTKQMELA 127

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
                      P+  T S +I+  C        L FS +A    L           +Q  
Sbjct: 128 G--------LSPNIYTLSILIN--CFSHLQRVDLAFSVLAKIIKLG----------LQPT 167

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
            + F  LI+ LCK+ K   A ELF  +   G  P+V TY  +I GLC  G+         
Sbjct: 168 IVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAG--- 224

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
              L K++   G  P++ TY+ +I+   K  RV+    IF  +     +PD  T+ SLI+
Sbjct: 225 ---LLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQ 281

Query: 403 IL 404
            L
Sbjct: 282 GL 283



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           D  C    +  A   F  +     +P ++ +  L+  +   GQ     +Y+TV  L K++
Sbjct: 70  DDACSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQ-----YYDTVISLTKQM 124

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              GL P++YT +ILINCF  + RV   F +  +I+     P  VTFT+LI  L
Sbjct: 125 ELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWL 178


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 123/357 (34%), Positives = 180/357 (50%), Gaps = 36/357 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T +EAL  F+ ML+M+P  P V  F  +   +A  KHY TVLSL K+++  G+  D YT 
Sbjct: 54  TIDEALSSFNRMLHMQPP-PSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTL 112

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            I+IN FC + RV  GF VL +I +    PD  TFT+LI+ LC E +I EA  LF K+  
Sbjct: 113 AIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVG 172

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + +  TY TLI+GLC+ G++  A+ L   M   N      CEP+ ITY+TIID L K
Sbjct: 173 EGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKN------CEPNVITYNTIIDCLFK 226

Query: 249 EAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCL----------------------CLN 285
           +      L  FS M +      ++ Y  ++   C                        + 
Sbjct: 227 DRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVI 286

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  L+D LCK   + IA ++   + + G+ P+VVTY  L+ G C   +MDE         
Sbjct: 287 FTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADK------ 340

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +F  +   G  P++ +Y+ LIN +CKI R+     +F  +      P+ VT+ +LI 
Sbjct: 341 VFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIH 397



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 171/366 (46%), Gaps = 36/366 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEAL +F  M+  +   P V+++N +   L K   +  V +L   +  + + P+   +  
Sbjct: 231 NEALNIFSEMI-AKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTT 289

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G V+    V+  +++    PD VT+T+L+   C  S + EA  +F  +   G
Sbjct: 290 LVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKG 349

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V +Y+TLING C+      A+ LFEEM            P+ +TY+T+I GLC   
Sbjct: 350 CAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRE------LVPNIVTYNTLIHGLCHVG 403

Query: 251 GSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLN----------------------FL 287
              + +  F  M +   +  +  Y  L+   C   +                      + 
Sbjct: 404 RLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYN 463

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            +IDG+C++ +L+ A +LF SL   GL P+V TY I+I GLC  G + E         LF
Sbjct: 464 IVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATK------LF 517

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           + +N+ G  PD  TYN++   F +     S   +   +L   F+ DA T T ++++L  +
Sbjct: 518 REMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDD 577

Query: 408 SFFRQV 413
              + V
Sbjct: 578 GLDQSV 583



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 24/255 (9%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R+L     P  V F  ++  +          +L  ++   G   DV+T   +IN  C   
Sbjct: 64  RMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLN 123

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
                 ++  ++      F +  +PD  T++T+I GLC E      L       F  +  
Sbjct: 124 RVDFGFSVLAKI------FKLGHQPDTATFTTLIRGLCVEGKIGEALHL-----FDKMVG 172

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
             F       Q   + +  LI GLCK+   + A  L +S+ +    PNV+TYN +I  L 
Sbjct: 173 EGF-------QPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLF 225

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
            D Q++E  +      +F  + + G+ P++ TYN +I+  CK         +   ++ S 
Sbjct: 226 KDRQVNEALN------IFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSK 279

Query: 390 FTPDAVTFTSLIKIL 404
             P+ V FT+L+  L
Sbjct: 280 IMPNVVIFTTLVDAL 294



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 98/239 (41%), Gaps = 24/239 (10%)

Query: 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
           I EA + F ++        V  +  ++  +    H    L+L ++M +     G+    D
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDS----LGI--PSD 108

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
             T + +I+  C      +F GFS +A    L            Q     F  LI GLC 
Sbjct: 109 VYTLAIVINSFC-HLNRVDF-GFSVLAKIFKLGH----------QPDTATFTTLIRGLCV 156

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
             K+  A  LF  +   G  PN VTY  LI GLC  G      +      L + +     
Sbjct: 157 EGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVG------NSRAAIRLLRSMVQKNC 210

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
            P++ TYN +I+C  K  +V+    IF  ++    +P+  T+ S+I  L   S ++ VA
Sbjct: 211 EPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVA 269


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 114/341 (33%), Positives = 175/341 (51%), Gaps = 43/341 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           PP+  F  + G L K KHY TV+SL K++   G+ PD  T +ILINCFC +G+++  F V
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG+IL+  + P+ +   +L+K LC +  + ++     K+   G ++D  +Y  L+NGLC+
Sbjct: 68  LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCK 127

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---------GSANFLGF 258
            G T  A+ L   + + +        PD + YSTIIDGLCK+             N  G 
Sbjct: 128 IGETRCAIKLLRTIEDRS------TRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGI 181

Query: 259 ------------------SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
                               M +F  LN+M     L  +      +  LID LCK  K+K
Sbjct: 182 FPDVITYTTLICGFCLAGQLMEAFGLLNEMI----LKNINPNIYTYNTLIDTLCKEGKVK 237

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            ++ L   + + G+ P+VV Y+IL+ G C  G++ + K    +FL+  +   TG+ PD+Y
Sbjct: 238 ESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQ---IFLVMVQ---TGVNPDVY 291

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +YNI+IN  CK  RV     +   +L     PD VT++SLI
Sbjct: 292 SYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLI 332



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 152/318 (47%), Gaps = 24/318 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R +RP V  ++ +   L K K  D    L+  +N  G+FPD  TY  LI  FC  G++  
Sbjct: 144 RSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLME 203

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
            F +L  ++     P+  T+ +LI  LC E ++ E+  L   +   G + DV  Y+ L++
Sbjct: 204 AFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMD 263

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C  G    A  +F  M     + GV   PD  +Y+ II+GLCK        G     +
Sbjct: 264 GYCLVGEVQKAKQIFLVMV----QTGV--NPDVYSYNIIINGLCK--------GKRVDEA 309

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            + L +M     +       + +  LIDGLCK+ ++    +L + +   G   N+VTYN 
Sbjct: 310 MNLLREMLHKNMIPDT----VTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNS 365

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L+ GLC +  +D+         LF ++   G+ P+ YTY  LI+  CK GR+  G  +F 
Sbjct: 366 LLDGLCKNQNLDKA------IALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQ 419

Query: 384 RILPSCFTPDAVTFTSLI 401
            +L   +  D  T+T +I
Sbjct: 420 HLLVKGYCIDVWTYTVMI 437



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 125/274 (45%), Gaps = 30/274 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  ++IL               +F  +  TG+ PD Y+YNI+IN  CK  RV     
Sbjct: 252 KPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMN 311

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +L     PD VT++SLI  LC   RI     L  ++   G   ++ TYN+L++GLC
Sbjct: 312 LLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLC 371

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +  +   A+ LF +M     E G+  +P+  TY+ +IDGLCK                  
Sbjct: 372 KNQNLDKAIALFMKMK----ERGI--QPNKYTYTALIDGLCKGG---------------R 410

Query: 267 LNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           L K    F  + V+  C++   +  +I GLCK      A  +   +   G +PN VT+ I
Sbjct: 411 LKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEI 470

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           +IR L    + D+ +       L   + + GL P
Sbjct: 471 IIRSLLEKDENDKAEK------LLHEMIAKGLLP 498



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 24/247 (9%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P  + F  ++  L          +L  ++   G   D+ T + LIN  C  G    + ++
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
             ++        +  +P+ I  +T++ GLC +      L F           +A  F + 
Sbjct: 68  LGKI------LKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKV-------VAQGFQMD 114

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           +V     ++  L++GLCKI + + A +L +++      P+VV Y+ +I GLC D  +DE 
Sbjct: 115 QV-----SYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEA 169

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                 + L+  +N+ G+FPD+ TY  LI  FC  G++   F +   ++     P+  T+
Sbjct: 170 ------YDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTY 223

Query: 398 TSLIKIL 404
            +LI  L
Sbjct: 224 NTLIDTL 230


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 189/349 (54%), Gaps = 31/349 (8%)

Query: 55  ERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFK 114
           ER +S     I  I  ++A+ +F  M+  RP  P +  F+  F  +A TK ++ VL   K
Sbjct: 35  ERLRSG----IVDIKEDDAIDLFQEMIRSRP-LPSLVDFSRFFSGVASTKQFNLVLDFCK 89

Query: 115 RLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174
           ++ L G+  + YT NI+INCFC+  +    + VLG++++  + PD  TF +LI  LC ES
Sbjct: 90  KMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLES 149

Query: 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234
           ++ EA  L  ++   GC+ +V TYN+++NG+C++G T +AL+L  +M   N       + 
Sbjct: 150 KVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERN------VKA 203

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCM-ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
           D  TYSTIID LC++          C+ A+ S   +M        ++   + +  L+ GL
Sbjct: 204 DVFTYSTIIDSLCRDG---------CIDAAISLFKEMETK----GIKSSLVTYNSLVGGL 250

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK  K     +L + +    ++PNV+T+N+LI     +G++ E         L+K + + 
Sbjct: 251 CKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANE------LYKEMITK 304

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           G+ P+  TYN L++ +C   R+S    +   ++ +  +PD VTFTSLIK
Sbjct: 305 GISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIK 353



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 155/317 (48%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN+L     K         L+K +   G+ P+  TYN L++ +C   R+S    +
Sbjct: 273 PNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNM 332

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++R+  +PD VTFTSLIK  C   R+ E   LF K+   G   +  TY+ L+ G C+
Sbjct: 333 LDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQ 392

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +G   +A  LF+EM +     GV+  PD +TY  ++DGLC        L       F  L
Sbjct: 393 SGKLEIAEELFQEMVS----LGVL--PDVMTYGILLDGLCDNGKLEKALEI-----FEDL 441

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K      +V        +  +I+G+CK  K++ A  LF SLP  G+ PNV+TY ++I G
Sbjct: 442 QKSKMNLDIVM-------YTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISG 494

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G + E        +L +++   G  P+  TYN LI    + G +++   +   +  
Sbjct: 495 LCKKGSLSEAN------ILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKS 548

Query: 388 SCFTPDAVTFTSLIKIL 404
             F+ DA +   +I +L
Sbjct: 549 CGFSADASSIKMVIDML 565



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 20/138 (14%)

Query: 285 NFLCLIDGL-----CKISKLKI---------ARELFQSLPRAGLMPNVVTYNILIRGLCN 330
           +FLC I G+     C   +L+          A +LFQ + R+  +P++V ++    G+ +
Sbjct: 18  DFLCTISGISDGRVCYGERLRSGIVDIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVAS 77

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
                 TK +  V    K++   G+  ++YT NI+INCFC+  +    + + G+++   +
Sbjct: 78  ------TKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGY 131

Query: 391 TPDAVTFTSLIKILEINS 408
            PD  TF +LI  L + S
Sbjct: 132 EPDTTTFNTLINGLCLES 149


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 188/358 (52%), Gaps = 44/358 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F+ +L  R + PP   FN + G L K+KHY TVL L +++   G+ P+    NI
Sbjct: 67  DDAVSLFNRLLR-RNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 125

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC++G +   F V  +IL+  + PD +TFT+L K LC + +I +A     K+   G
Sbjct: 126 LINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALG 185

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-E 249
              D  +Y TLI+GLC+ G T  AL+L + + +GN     + +P+ + Y+TIID +CK +
Sbjct: 186 FHFDQISYGTLIHGLCKVGETRAALDLLQRV-DGN-----LVQPNVVMYNTIIDSMCKVK 239

Query: 250 AGSANFLGFSCMAS---------FSAL-----------------NKMAFYFPLVRVQCLC 283
             +  F  FS M S         +SAL                 NKM     L  ++   
Sbjct: 240 LVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMI----LENIKPDV 295

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             F  L++  CK  K+K  + +F  + + G+ PN VTYN L+ G C   ++++ K     
Sbjct: 296 YTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKS---- 351

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +F  +   G+ PD+ +Y+I+IN FCKI +      +F  +      PD VT++SLI
Sbjct: 352 --IFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLI 407



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 158/337 (46%), Gaps = 37/337 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  +F  M++   S P V +++ L             + LF ++ L  + PD YT+NI
Sbjct: 242 NEAFDLFSEMVSKGIS-PDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNI 300

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N FCK G++  G  V   +++    P+ VT+ SL+   C    + +A ++F  +   G
Sbjct: 301 LVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG 360

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ +Y+ +ING C+      A+NLF+EM   N        PD +TYS++IDGL K  
Sbjct: 361 VNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKN------IIPDVVTYSSLIDGLSKSG 414

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARE 304
                             ++++   LV       V      +  ++D LCK  ++  A  
Sbjct: 415 ------------------RISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIA 456

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L       G  P++ TY+ILI+GLC  G++++ +       +F+ L   G   D+Y Y I
Sbjct: 457 LLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARK------VFEDLLVKGYNLDVYAYTI 510

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +I  FC  G  +    +  ++  +   PDA T+  +I
Sbjct: 511 MIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIII 547



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 146/326 (44%), Gaps = 24/326 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N +   + K K  +    LF  +   G+ PD  TY+ LI+ FC +G++     
Sbjct: 222 QPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAID 281

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  +++     PD  TF  L+   C + ++ E   +F  +   G + +  TYN+L++G C
Sbjct: 282 LFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYC 341

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A ++F  MA G    GV   PD  +YS +I+G CK            M  F  
Sbjct: 342 LVKEVNKAKSIFNTMAQG----GV--NPDIQSYSIMINGFCKIKKFD-----EAMNLFKE 390

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +++      +V        +  LIDGL K  ++  A +L   +   G+ PN+ TYN ++ 
Sbjct: 391 MHRKNIIPDVV-------TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILD 443

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC   Q+D+         L  +    G  PD+ TY+ILI   C+ G++     +F  +L
Sbjct: 444 ALCKTHQVDKA------IALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLL 497

Query: 387 PSCFTPDAVTFTSLIKILEINSFFRQ 412
              +  D   +T +I+   +   F +
Sbjct: 498 VKGYNLDVYAYTIMIQGFCVEGLFNE 523



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 124/284 (43%), Gaps = 35/284 (12%)

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V     +  R+LR   TP A  F  ++  L           L  K+   G + ++   N 
Sbjct: 66  VDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 125

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-KEAGSANFLGFS 259
           LIN  C+ G    A ++F ++     + G V  PD IT++T+  GLC K      FL   
Sbjct: 126 LINCFCQLGLIPFAFSVFAKIL----KMGYV--PDTITFTTLSKGLCLKGQIQQAFLFHD 179

Query: 260 CMASFSALNKMAFYFPLVR----------------------VQCLCLNFLCLIDGLCKIS 297
            + +         Y  L+                       VQ   + +  +ID +CK+ 
Sbjct: 180 KVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVK 239

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
            +  A +LF  +   G+ P+VVTY+ LI G C  G++ +         LF ++    + P
Sbjct: 240 LVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAID------LFNKMILENIKP 293

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           D+YT+NIL+N FCK G++  G  +F  ++     P+ VT+ SL+
Sbjct: 294 DVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLM 337



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 7/179 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F  M + +   P V +++ L   L+K+      L L  +++  G+ P+  TYN 
Sbjct: 382 DEAMNLFKEM-HRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNS 440

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++  CK  +V     +L +     F PD  T++ LIK LC   ++ +A  +F  L V G
Sbjct: 441 ILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKG 500

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
             LDV+ Y  +I G C  G    AL L  +M + NG     C PDA TY  II  L K+
Sbjct: 501 YNLDVYAYTIMIQGFCVEGLFNEALALLSKMED-NG-----CIPDAKTYEIIILSLFKK 553



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 1/149 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL + D M + R   P + ++N +   L KT   D  ++L  +    G  PD  TY+ILI
Sbjct: 419 ALQLVDQMHD-RGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILI 477

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              C+ G++     V   +L   +  D   +T +I+  C E    EA AL +K+   GC 
Sbjct: 478 KGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCI 537

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            D  TY  +I  L +     +A  L  EM
Sbjct: 538 PDAKTYEIIILSLFKKDENDMAEKLLREM 566



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 6/111 (5%)

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  LF  L R    P    +N ++      G + ++KHY TV  L +++   G+ P+L  
Sbjct: 69  AVSLFNRLLRRNTTPPAFEFNKIL------GSLVKSKHYHTVLYLSQKMEFRGIKPNLVN 122

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            NILINCFC++G +   F +F +IL   + PD +TFT+L K L +    +Q
Sbjct: 123 CNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQ 173


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/332 (35%), Positives = 173/332 (52%), Gaps = 21/332 (6%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ ML MR + PP+  FN +    AK KHY TV SL  RL L G+ PD +T NI
Sbjct: 41  DDAVSQFNRMLCMRHT-PPIIQFNKILDSFAKMKHYSTV-SLSHRLELKGIQPDLFTLNI 98

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC MG+++ GF VL +IL+  + P  VT  +LIK LC + ++ +A     KL   G
Sbjct: 99  LINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 158

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +L+   Y TLING+C+ G T  A+ L +++       G + +PD + YSTIID LCK  
Sbjct: 159 FQLNQVGYGTLINGVCKIGDTRAAIKLLKKID------GRLTKPDVVMYSTIIDALCKYQ 212

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             +   G      FS +        +V        +  LI G C + KLK A  L   + 
Sbjct: 213 LVSEAYGL-----FSEMTVKGISADVV-------TYNTLIYGFCIVGKLKEAIGLLNVMV 260

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETK-HYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              + P+V TY IL+  LC +G++ E K     V+ L   +   G   D+ TY+ LI+  
Sbjct: 261 LKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGL 320

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK G +     +F ++      P+  TFT L+
Sbjct: 321 CKNGHLDRAIALFNKMKDQGIRPNMFTFTILL 352



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 147/326 (45%), Gaps = 30/326 (9%)

Query: 83  MRPSRPPVT-SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           ++   PP T + N L   L         L    +L   G   ++  Y  LIN  CK+G  
Sbjct: 120 LKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGTLINGVCKIGDT 179

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                +L +I      PD V ++++I  LC    + EA  LF+++ V G   DV TYNTL
Sbjct: 180 RAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTL 239

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           I G C  G    A+ L   M            PD  TY+ ++D LCKE            
Sbjct: 240 IYGFCIVGKLKEAIGLLNVMVLK------TINPDVYTYTILVDALCKEGKVK-------- 285

Query: 262 ASFSALNKMAFYFPLV-----RVQ-CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
               A  ++++ + L+     R Q    + +  LIDGLCK   L  A  LF  +   G+ 
Sbjct: 286 ---EAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIR 342

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           PN+ T+ IL+ GL   G++ + +       +F+ L + G   ++YTYN++IN  CK G +
Sbjct: 343 PNMFTFTILLDGLWKGGRLKDAQE------VFQDLLTKGYHLNVYTYNVMINGHCKQGLL 396

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
                +  ++  +   P+A TF ++I
Sbjct: 397 EEALTMLSKMEDNGCIPNAFTFETII 422



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 118/265 (44%), Gaps = 25/265 (9%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R ++P V  ++ +   L K +       LF  + + G+  D  TYN LI  FC +G+
Sbjct: 189 IDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGK 248

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA-------ALFTKLRVFGCEL 193
           +     +L  ++     PD  T+T L+  LC E ++ EA         L  ++R  G   
Sbjct: 249 LKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPA 308

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           DV TY++LI+GLC+ GH   A+ LF +M +          P+  T++ ++DGL K     
Sbjct: 309 DVITYSSLIDGLCKNGHLDRAIALFNKMKDQG------IRPNMFTFTILLDGLWKGGRLK 362

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
           +         F  L    ++  +         +  +I+G CK   L+ A  +   +   G
Sbjct: 363 D-----AQEVFQDLLTKGYHLNVY-------TYNVMINGHCKQGLLEEALTMLSKMEDNG 410

Query: 314 LMPNVVTYNILIRGLCNDGQMDETK 338
            +PN  T+  +I  L    + D+ +
Sbjct: 411 CIPNAFTFETIIIALFKKDENDKAE 435



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 110/257 (42%), Gaps = 29/257 (11%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R+L    TP  + F  ++ D  A+ +     +L  +L + G + D+FT N LIN  C  G
Sbjct: 49  RMLCMRHTPPIIQFNKIL-DSFAKMKHYSTVSLSHRLELKGIQPDLFTLNILINCFCHMG 107

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF--SCMASFSAL 267
                 ++  ++            P  +T +T+I GLC +      L F    +A    L
Sbjct: 108 QITFGFSVLAKILKRG------YPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQL 161

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N++ +                LI+G+CKI   + A +L + +      P+VV Y+ +I  
Sbjct: 162 NQVGYG--------------TLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDA 207

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC    + E       + LF  +   G+  D+ TYN LI  FC +G++     +   ++ 
Sbjct: 208 LCKYQLVSEA------YGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVL 261

Query: 388 SCFTPDAVTFTSLIKIL 404
               PD  T+T L+  L
Sbjct: 262 KTINPDVYTYTILVDAL 278



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 14/185 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAK-------TKHYDTVLSLFKRLNLTGLFPD 124
           EA+ + + M+ ++   P V ++ IL   L K        +    V  L   +   G   D
Sbjct: 251 EAIGLLNVMV-LKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPAD 309

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
             TY+ LI+  CK G +     +  ++      P+  TFT L+  L    R+ +A  +F 
Sbjct: 310 VITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQ 369

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
            L   G  L+V+TYN +ING C+ G    AL +  +M + NG     C P+A T+ TII 
Sbjct: 370 DLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMED-NG-----CIPNAFTFETIII 423

Query: 245 GLCKE 249
            L K+
Sbjct: 424 ALFKK 428



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 2/148 (1%)

Query: 76  VFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           V+D +  MR    P  V +++ L   L K  H D  ++LF ++   G+ P+ +T+ IL++
Sbjct: 294 VWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLD 353

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
              K GR+     V   +L   +  +  T+  +I   C +  + EA  + +K+   GC  
Sbjct: 354 GLWKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIP 413

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEM 221
           + FT+ T+I  L +      A  L  +M
Sbjct: 414 NAFTFETIIIALFKKDENDKAEKLLRQM 441


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 186/350 (53%), Gaps = 31/350 (8%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           +ER +S     I  I  ++A+ +F  M+  RP  P +  F+  F  +A+TK ++ VL   
Sbjct: 57  RERLRSG----IVDIKKDDAIALFQEMIRSRP-LPGLVDFSRFFSAIARTKQFNLVLDFC 111

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           K+L L G+  + YT NI+INCFC+  +    + VLG++++  + PD  TF +LI  LC E
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLE 171

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
            ++ +A  L  ++   GC+ D+ TYN+++NG+CR+G T +A ++  +M   N       +
Sbjct: 172 GKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERN------VK 225

Query: 234 PDAITYSTIIDGLCKEAG-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
            D  TYSTIID LC++    A    F  M +    + +  Y  LVR             G
Sbjct: 226 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR-------------G 272

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LCK  K      L + +    ++PNV+T+N+L+     +G++ E         L+K + +
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE------LYKEMIT 326

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            G+ P++ TYN L++ +C   R+S    +   ++ +  +PD VTFTSLIK
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIK 376



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 155/321 (48%), Gaps = 24/321 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +FN+L     K         L+K +   G+ P+  TYN L++ +C   R+S 
Sbjct: 292 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSE 351

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +L  ++R+  +PD VTFTSLIK  C   R+ +   +F  +   G   +  TY+ L+ 
Sbjct: 352 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C++G   +A  LF+EM +     GV+  PD +TY  ++DGLC        L       
Sbjct: 412 GFCQSGKIKLAEELFQEMVS----HGVL--PDVMTYGILLDGLCDNGKLEKALEI----- 460

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F  L K      +V        +  +I+G+CK  K++ A  LF SLP  G+ PNV+TY +
Sbjct: 461 FEDLQKSKMDLGIVM-------YTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +I GLC  G + E        +L +++   G  P+  TYN LI    + G +++   +  
Sbjct: 514 MISGLCKKGSLSEAN------ILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIE 567

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +    F+ DA +   +I +L
Sbjct: 568 EMKSCGFSADASSIKMVIDML 588



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +I+  C+  K   A  +   + + G  P+  T+N LI GLC +G++ +        +L  
Sbjct: 129 MINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKA------VVLVD 182

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           R+   G  PD+ TYN ++N  C+ G  S  F +  ++       D  T++++I  L
Sbjct: 183 RMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSL 238


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 179/340 (52%), Gaps = 29/340 (8%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           + S+  NEAL +F +M+  RP  P +  F  L   +AK K +D V++L K L + G+  D
Sbjct: 47  LHSLQFNEALDLFSHMVESRP-LPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSND 105

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            YT N+L+NCFC+  +       LG++++  F PD  TFTSLI   C  +RI EA ++  
Sbjct: 106 LYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVN 165

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           ++   G + DV  Y T+I+ LC+ GH   AL+LF +M N    +G+   PD + Y+++++
Sbjct: 166 QMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMEN----YGI--RPDVVMYTSLVN 219

Query: 245 GLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           GLC       A+ L    M                +++   + F  LID   K  KL  A
Sbjct: 220 GLCNSGRWRDADLLLRGMMKR--------------KIKPDVITFNALIDAFVKEGKLLDA 265

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
           +EL+  + +  + PN+ TY  LI GLC +G++DE +       +F  + + G FPD+  Y
Sbjct: 266 KELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQ------MFYLMETKGCFPDVVAY 319

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             LIN FCK  +V     IF  +     T + +T+T+LI+
Sbjct: 320 TSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQ 359



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 168/384 (43%), Gaps = 64/384 (16%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ + + M+ M   +P V  +  +   L K  H D  LSLF ++   G+ PD   Y  L
Sbjct: 159 EAMSMVNQMVEM-GIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSL 217

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N  C  GR     ++L  +++    PD +TF +LI     E ++++A  L+ ++     
Sbjct: 218 VNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSI 277

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             ++FTY +LINGLC  G    A  +F  M          C PD + Y+++I+G CK   
Sbjct: 278 APNIFTYTSLINGLCMEGRLDEARQMFYLMETKG------CFPDVVAYTSLINGFCK--- 328

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                   C     A+ K+ +      +    + +  LI G   + K  +A+E+F  +  
Sbjct: 329 --------CKKVEDAM-KIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVS 379

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI----- 366
            G+ PN+ TYN+L+  LC +G++++      +F   ++    G+ P++ TYN+L+     
Sbjct: 380 RGVPPNIRTYNVLLHCLCYNGKVNKAL---MIFEDMQKREIDGVPPNIRTYNVLLHGLCY 436

Query: 367 ------------------------------NCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                                            CK G+V     +F  +      P+ VT
Sbjct: 437 NGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVT 496

Query: 397 FTSLIK-------ILEINSFFRQV 413
           +T++I        +LE +  FR++
Sbjct: 497 YTTMISGLFREGLMLEAHVLFRKM 520



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 128/284 (45%), Gaps = 22/284 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +++ M+ M  + P + ++  L   L      D    +F  +   G FPD   Y  L
Sbjct: 264 DAKELYNEMIQMSIA-PNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSL 322

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN FCK  +V     +   + +   T + +T+T+LI+      +   A  +F  +   G 
Sbjct: 323 INGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGV 382

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             ++ TYN L++ LC  G    AL +FE+M     + GV   P+  TY+ ++ GLC    
Sbjct: 383 PPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREID-GV--PPNIRTYNVLLHGLCYNGK 439

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                    +  F  + K         +    + +  +I G+CK  K+K A  LF SLP 
Sbjct: 440 LE-----KALMVFGDMQKRD-------MDIGIITYTIIIQGMCKAGKVKDALNLFCSLPS 487

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
            G+ PNVVTY  +I GL  +G M E        +LF+++   G+
Sbjct: 488 KGVKPNVVTYTTMISGLFREGLMLEAH------VLFRKMKEDGV 525



 Score = 44.7 bits (104), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           ++F  L++ + K+ K  +   L + L   G+  ++ T N+L+   C   Q        + 
Sbjct: 72  IDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQ----PCLASS 127

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           FL   +L   G  PD++T+  LIN FC   R+     +  +++     PD V +T++I  
Sbjct: 128 FL--GKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDS 185

Query: 404 L 404
           L
Sbjct: 186 L 186


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 120/375 (32%), Positives = 189/375 (50%), Gaps = 38/375 (10%)

Query: 52  FLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK--HYDTV 109
           FL  R  S  +   ++I  +  +  F+++L  +P+   +  FN + G L K+   HY T 
Sbjct: 29  FLITRLYSQFQFVPSNIDVDNVVSSFNHLLRTKPT-SSIIEFNKILGSLVKSNNNHYPTA 87

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           +SL +RL   G+ PD +T+NILINC+C M  ++  F ++ +IL+  + PD +TF +LIK 
Sbjct: 88  ISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKG 147

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
           LC   ++ EA      +   G  LD F+Y TLINGLC+ G T  AL +  ++       G
Sbjct: 148 LCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKID------G 201

Query: 230 VVCEPDAITYSTIIDGLCK----------------EAGSANFLGFSCMA-SFSALNKMAF 272
            + + + + Y+TIID LCK                +  S + + FS +   F  + ++  
Sbjct: 202 KLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEE 261

Query: 273 YFPLVRVQCL------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            F L R   L         F  L+D LCK   LK A+ +   + + G+MPNVVTY+ L+ 
Sbjct: 262 AFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMD 321

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C   Q+++ KH      +   ++  G  P+ ++Y  +IN FCKI  V     +F  + 
Sbjct: 322 GYCLVNQVNKAKH------VLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQ 375

Query: 387 PSCFTPDAVTFTSLI 401
                PD VT+ SLI
Sbjct: 376 FKGIAPDKVTYNSLI 390



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 159/317 (50%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F+ L          +    LF+ + L  + PD YT+NIL++  CK G +     +
Sbjct: 241 PDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNM 300

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +++    P+ VT++SL+   C  +++ +A  +   +   G   +  +Y T+ING C+
Sbjct: 301 LVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCK 360

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 AL+LF +M     +F  +  PD +TY+++IDGLCK +G  ++       ++  +
Sbjct: 361 IKMVDEALSLFNDM-----QFKGIA-PDKVTYNSLIDGLCK-SGRISY-------AWELV 406

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           ++M        +      + CLID LCK   +  A  L + +   G+ P++ T+NILI G
Sbjct: 407 DEMHDNGQPANI----FTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYG 462

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G++   +       +F+ L S G   + +TYNI++N  CK G       +  ++  
Sbjct: 463 LCKVGRLKNAQD------VFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDD 516

Query: 388 SCFTPDAVTFTSLIKIL 404
           +   PDAVT+ +LI+ L
Sbjct: 517 NGIIPDAVTYETLIQAL 533



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 152/369 (41%), Gaps = 62/369 (16%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   +FN L   L         L     +   G   D+++Y  LIN  CK+G       
Sbjct: 135 EPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQ 194

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L +I       + V + ++I  LC    +++A  L++++       DV T++ LI G C
Sbjct: 195 MLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFC 254

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---GSANFLGFSCMAS 263
             G    A  LF EM   N        PD  T++ ++D LCKE    G+ N L    M  
Sbjct: 255 IVGQLEEAFGLFREMVLKN------INPDYYTFNILVDALCKEGNLKGAKNML--VVMMK 306

Query: 264 FSALNKMAFYFPLVRVQCLC---------LN-------------FLCLIDGLCKISKLKI 301
              +  +  Y  L+   CL          LN             +  +I+G CKI  +  
Sbjct: 307 EGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDE 366

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-------DE------------------ 336
           A  LF  +   G+ P+ VTYN LI GLC  G++       DE                  
Sbjct: 367 ALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLID 426

Query: 337 ----TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
                 H +    L K++   G+ PD+YT+NILI   CK+GR+ +   +F  +L   ++ 
Sbjct: 427 ALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSV 486

Query: 393 DAVTFTSLI 401
           +A T+  ++
Sbjct: 487 NAWTYNIMV 495



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 141/298 (47%), Gaps = 25/298 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M+ ++   P   +FNIL   L K  +     ++   +   G+ P+  TY+ L
Sbjct: 261 EAFGLFREMV-LKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSL 319

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ +C + +V+    VL  I +    P+A ++ ++I   C    + EA +LF  ++  G 
Sbjct: 320 MDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGI 379

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D  TYN+LI+GLC++G    A  L +EM + NG+       +  TY+ +ID LCK   
Sbjct: 380 APDKVTYNSLIDGLCKSGRISYAWELVDEMHD-NGQ-----PANIFTYNCLIDALCKNHH 433

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
               +          +    + F +            LI GLCK+ +LK A+++FQ L  
Sbjct: 434 VDQAIALVKKIKDQGIQPDMYTFNI------------LIYGLCKVGRLKNAQDVFQDLLS 481

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            G   N  TYNI++ GLC +G  DE +       L  +++  G+ PD  TY  LI   
Sbjct: 482 KGYSVNAWTYNIMVNGLCKEGLFDEAE------ALLSKMDDNGIIPDAVTYETLIQAL 533



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 116/259 (44%), Gaps = 30/259 (11%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAES--RIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            +LR+  T   + F  ++  L   +      A +L  +L   G   D+FT+N LIN  C 
Sbjct: 56  HLLRTKPTSSIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCH 115

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A ++  ++        +  EPD IT++T+I GLC        L F         
Sbjct: 116 MAEMNFAFSMMAKI------LKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHV----- 164

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             +A  F L +      ++  LI+GLCKI + + A ++ + +    +  NVV YN +I  
Sbjct: 165 --LALGFHLDQ-----FSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDS 217

Query: 328 LCNDGQMDETKHYETV--FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           LC        KH   +  + L+ ++ +  + PD+ T++ LI  FC +G++   F +F  +
Sbjct: 218 LC--------KHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREM 269

Query: 386 LPSCFTPDAVTFTSLIKIL 404
           +     PD  TF  L+  L
Sbjct: 270 VLKNINPDYYTFNILVDAL 288



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 2/140 (1%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           N +P+   + ++N L   L K  H D  ++L K++   G+ PD YT+NILI   CK+GR+
Sbjct: 412 NGQPAN--IFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRL 469

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
            +   V   +L   ++ +A T+  ++  LC E    EA AL +K+   G   D  TY TL
Sbjct: 470 KNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETL 529

Query: 202 INGLCRTGHTIVALNLFEEM 221
           I  L        A  L  EM
Sbjct: 530 IQALFHKDENEKAEKLLREM 549



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 4/107 (3%)

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  L R     +++ +N ++  L          HY T   L +RL   G+ PD++T+NIL
Sbjct: 54  FNHLLRTKPTSSIIEFNKILGSLVKSN----NNHYPTAISLSRRLEFHGITPDIFTFNIL 109

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           INC+C +  ++  F +  +IL   + PD +TF +LIK L +N   ++
Sbjct: 110 INCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKE 156


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 112/330 (33%), Positives = 173/330 (52%), Gaps = 25/330 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL  F++M++  P  P +  F+ L   L + KHY TVLSL KR+ L  +  D + +NIL
Sbjct: 67  DALFSFNHMIHKHP-LPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNIL 125

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           INCF ++ RV   F VLG+I++  F PDAVTF+SLI  LC E +   A   F ++   G 
Sbjct: 126 INCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGY 185

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + ++ TYNT+I G C+ G T VA+ L ++M    G       PD + Y+TIIDGLCK+  
Sbjct: 186 QPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGG------RPDIVIYNTIIDGLCKDRL 239

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            +  L          +    F + +            L+ GLC   + + A  LF  +  
Sbjct: 240 VSEALDIFSEIKGKGVRPDVFTYSI------------LMHGLCNSDQKEEASALFNEMMS 287

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
             +MP+VVT+NIL+  LC +G + E +       + K +   G+ P+  TYN L+N +C 
Sbjct: 288 LNIMPDVVTFNILVDKLCKEGMLSEAQG------IIKIMIEKGVEPNYATYNSLMNGYCL 341

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +V    ++F  ++     P+ V++  LI
Sbjct: 342 QNKVFEARMVFDAMITKGCMPNVVSYNILI 371



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 166/341 (48%), Gaps = 35/341 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   +F+ L   L     +   +  F  +  +G  P+ +TYN +I  FCK+G+ +    
Sbjct: 151 EPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVG 210

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L ++ ++   PD V + ++I  LC +  + EA  +F++++  G   DVFTY+ L++GLC
Sbjct: 211 LLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLC 270

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-------- 258
            +     A  LF EM + N        PD +T++ ++D LCKE   +   G         
Sbjct: 271 NSDQKEEASALFNEMMSLN------IMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKG 324

Query: 259 ---------SCMASFSALNKM----AFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIAR 303
                    S M  +   NK+      +  ++   C+   +++  LI+G CK  ++  AR
Sbjct: 325 VEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEAR 384

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           ELF  +   GL+PN   YN LI GLC  G+  E +       LFK + + G  PDL T  
Sbjct: 385 ELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARE------LFKDMQAQGCSPDLVTCT 438

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           IL++  CK+G + +   +F  +  SC  P+ VT+  LI+ +
Sbjct: 439 ILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAM 479



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 131/266 (49%), Gaps = 23/266 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F   +  +  RP V +++IL   L  +   +   +LF  +    + PD  T+NI
Sbjct: 241 SEALDIFSE-IKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNI 299

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G +S    ++  ++     P+  T+ SL+   C ++++ EA  +F  +   G
Sbjct: 300 LVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKG 359

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V +YN LING C+      A  LF+EM+      G++  P+   Y+T+I GLC+  
Sbjct: 360 CMPNVVSYNILINGYCKAQRIDEARELFDEMSFR----GLI--PNTFNYNTLISGLCQA- 412

Query: 251 GSANFLGFSCMAS--FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                 G  C A   F  +        LV           L+D LCK+  L  A  LF++
Sbjct: 413 ------GRHCEARELFKDMQAQGCSPDLVTCT-------ILLDSLCKLGYLDNALRLFRA 459

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQM 334
           +  + L PN+VTY+ILIR +   G++
Sbjct: 460 MQDSCLKPNLVTYDILIRAMYKSGKI 485



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 24/269 (8%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C +  +         ++     P  V F  L+  L          +L  ++ +   E DV
Sbjct: 60  CSLTNIEDALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDV 119

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           F +N LIN   R      A ++  ++     + G   EPDA+T+S++I+GLC E   A  
Sbjct: 120 FHFNILINCFSRLQRVDFAFSVLGKII----KLGF--EPDAVTFSSLINGLCFEDKFARA 173

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           + F     F  +   + Y P +        +  +I G CKI K  +A  L + + +AG  
Sbjct: 174 MEF-----FDEM-VASGYQPNLHT------YNTIIKGFCKIGKTTVAVGLLKKMDKAGGR 221

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P++V YN +I GLC D  + E         +F  +   G+ PD++TY+IL++  C   + 
Sbjct: 222 PDIVIYNTIIDGLCKDRLVSEA------LDIFSEIKGKGVRPDVFTYSILMHGLCNSDQK 275

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                +F  ++     PD VTF  L+  L
Sbjct: 276 EEASALFNEMMSLNIMPDVVTFNILVDKL 304


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 112/354 (31%), Positives = 180/354 (50%), Gaps = 36/354 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+AL  F++M+N  P  P +  F  LF  L + KHY TV+SL K++ + G+  D  +  I
Sbjct: 73  NDALSAFNHMVNTNP-LPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTI 131

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC++  V +GF VLG+I++    P+ +TF++LI   C E +I  A  LF  +   G
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARG 191

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + +V +Y+ +I GLCR G T   + L E M        V CEPD + Y+TI+D LCK+ 
Sbjct: 192 YKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKV------VGCEPDVVIYNTIVDRLCKDR 245

Query: 251 GSANFLGFSC-MASFSALNKMAFYFPLVR----------------------VQCLCLNFL 287
                +   C M     L  +  Y  L+                       +    + F 
Sbjct: 246 LVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFS 305

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LID +CK  ++  AR + +++   G+ P+V TYN L+ G C   ++ E +       +F
Sbjct: 306 VLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARK------VF 359

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + + S G  PD+++++IL+N +CK  R+     +F  +      PD V++ +LI
Sbjct: 360 EVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLI 413



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 135/298 (45%), Gaps = 24/298 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   L     +     L   +    + PD   +++LI+  CK G VS   V+
Sbjct: 264 PTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVI 323

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      PD  T+ +L+   C    ++EA  +F  +   G   DVF+++ L+NG C+
Sbjct: 324 LKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCK 383

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A  LF+EM +     G++  PD ++Y+T+I GLC+               F  +
Sbjct: 384 AKRIDEAKQLFDEMTHR----GLI--PDTVSYNTLISGLCQARRP-----LEAEELFKDM 432

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +   +   LV        +  L+D L K   L  A  LF+++  +GL P++VTYNI+I G
Sbjct: 433 HSNGYPPNLV-------TYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDG 485

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           +C  G+  + +       LF  L+  GL P+ +     I+  CK G +      F ++
Sbjct: 486 MCKYGKFKDARE------LFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQM 537



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 30/258 (11%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EG+++     EA  +   M  M    P V ++N L               +F+ +   G 
Sbjct: 314 EGEVS-----EARVILKTMTEM-GVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGR 367

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD ++++IL+N +CK  R+     +   +      PD V++ +LI  LC   R +EA  
Sbjct: 368 MPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEE 427

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           LF  +   G   ++ TY+ L++ L + G+   A+ LF  M N         +PD +TY+ 
Sbjct: 428 LFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSG------LKPDLVTYNI 481

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN-FLCL--IDGLCKISK 298
           +IDG+CK               +         F  + V+ L  N ++C   IDG+CK   
Sbjct: 482 MIDGMCK---------------YGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGL 526

Query: 299 LKIARELFQSLPRAGLMP 316
           L  A + F+ + +    P
Sbjct: 527 LDEAHKAFRQMEKDDCSP 544



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 28/249 (11%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P  V F  L   L          +L  ++ + G   DV +   LIN  CR  H     ++
Sbjct: 89  PSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGFSV 148

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFP 275
             ++     + G+  EP+ IT+ST+I+G C E   G A  L F  M +         Y P
Sbjct: 149 LGKII----KLGL--EPNVITFSTLINGFCIEGKIGRAIEL-FDVMVARG-------YKP 194

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
            V       ++  +I GLC++ K     +L + +   G  P+VV YN ++  LC D  ++
Sbjct: 195 NVH------SYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVN 248

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           E  H      +F ++  TG+ P + TY  LI+    +GR    F +   +      PD V
Sbjct: 249 EAVH------IFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLV 302

Query: 396 TFTSLIKIL 404
            F+ LI I+
Sbjct: 303 AFSVLIDIM 311


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  190 bits (483), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/356 (32%), Positives = 172/356 (48%), Gaps = 49/356 (13%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F+ +L+     PP   F  + G L K K Y T LSL +++   G+ PD  T N+L+NCF
Sbjct: 44  LFNRLLHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCF 103

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            ++G +   F V  +IL+  + PDAVTFT LIK LC +  + +A     K+   G +LD 
Sbjct: 104 SQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQ 163

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            +Y TLINGLCR G T  A+ L   +       G +  P+ + YSTIID +CK+    + 
Sbjct: 164 VSYGTLINGLCRVGETKAAVQLLRRVD------GKLVRPNVVMYSTIIDSMCKDKLVNDA 217

Query: 256 LGFSC-MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
               C M S              R+    + +  LI G C + KLK A +LF  +    +
Sbjct: 218 FDLYCEMVS-------------KRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNI 264

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFL----------------------------- 345
            PNV T++ILI G C +G++ E K+   V +                             
Sbjct: 265 NPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKS 324

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LF  +   G+ PD+++Y+I+IN FCKI  V     +F  +      P+ VT+ SL+
Sbjct: 325 LFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLV 380



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 154/315 (48%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V  ++ +   + K K  +    L+  +    + PD  TY+ LI+ FC +G++ +   
Sbjct: 195 RPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVD 254

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  R++     P+  TF+ LI   C E ++ EA  +   +     +LDV TYN+L++G C
Sbjct: 255 LFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYC 314

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A +LF  MA    + GV   PD  +YS +I+G CK       +    M  F  
Sbjct: 315 LVKQVNKAKSLFNVMA----QRGVT--PDVWSYSIMINGFCKIK-----MVDEAMKLFEE 363

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           ++     FP V      + +  L+DGLCK  +   A EL   +   G   N++TYN ++ 
Sbjct: 364 MHCKQI-FPNV------VTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILD 416

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            +C +  +D+        +L  ++   G+ PD++TY +LIN  CK+GR+     +F  +L
Sbjct: 417 AICKNNHVDKA------IVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLL 470

Query: 387 PSCFTPDAVTFTSLI 401
              ++P+  T+TSLI
Sbjct: 471 VKGYSPNIYTYTSLI 485



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 167/337 (49%), Gaps = 31/337 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  ++  M++ R S P V +++ L             + LF R+    + P+ YT++I
Sbjct: 215 NDAFDLYCEMVSKRIS-PDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSI 273

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ FCK G+V     VL  +++     D VT+ SL+   C   ++ +A +LF  +   G
Sbjct: 274 LIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRG 333

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE---PDAITYSTIIDGLC 247
              DV++Y+ +ING C+      A+ LFEEM          C+   P+ +TY++++DGLC
Sbjct: 334 VTPDVWSYSIMINGFCKIKMVDEAMKLFEEMH---------CKQIFPNVVTYNSLVDGLC 384

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K   +      SC  +   +++M        +    + +  ++D +CK + +  A  L  
Sbjct: 385 KSGRT------SC--ALELVDEMHDRGQPSNI----ITYNSILDAICKNNHVDKAIVLLT 432

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +   G+ P++ TY +LI GLC  G++D+ +       +F+ L   G  P++YTY  LIN
Sbjct: 433 KIKEKGIQPDIFTYTVLINGLCKVGRLDDAQK------VFEDLLVKGYSPNIYTYTSLIN 486

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            FC  G    G  +  ++  +   P+A+T+  LI  L
Sbjct: 487 GFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSL 523



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 2/149 (1%)

Query: 75  CVFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           C  + +  M     P  + ++N +   + K  H D  + L  ++   G+ PD +TY +LI
Sbjct: 391 CALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLI 450

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK+GR+     V   +L   ++P+  T+TSLI   C +    E  A+ +K++  GC 
Sbjct: 451 NGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCI 510

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            +  TY  LI+ L        A  L  EM
Sbjct: 511 PNAITYEILIHSLFEKDENDKAEKLLREM 539



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 44/71 (61%)

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G + + K Y+T   L +++   G+ PD  T N+L+NCF ++G +   F +F +IL   + 
Sbjct: 66  GSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYH 125

Query: 392 PDAVTFTSLIK 402
           PDAVTFT LIK
Sbjct: 126 PDAVTFTILIK 136


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 120/320 (37%), Positives = 170/320 (53%), Gaps = 34/320 (10%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ML MRP  P +  F+ L   + + KHY TVLSL+K+++  G+  + YT NILIN FC + 
Sbjct: 1   MLRMRPP-PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLN 59

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           R+   F VLG IL+  + P   TFT+LI+ LC E +I EA  LF K+   G + DV TY 
Sbjct: 60  RLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYG 119

Query: 200 TLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           TLINGLC+      AL+LF +M A G         P+  TYS++I GLC        LG 
Sbjct: 120 TLINGLCKDRQLTEALSLFSDMLAKG-------ISPNNFTYSSLIHGLC-------ILGH 165

Query: 259 SCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKI---ARELFQSLPRAG 313
              A       +  ++ ++  + +   L F  L+D LCK   ++I   A  LF+ + + G
Sbjct: 166 WKEA-------IRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQG 218

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           L+P+ VTYN LI GLC+ G++ +         LF  +   G  PDL TY IL +  CK  
Sbjct: 219 LIPDTVTYNTLIHGLCHVGRLRD------AIALFHEMVVYGQIPDLVTYRILFDYLCKNH 272

Query: 374 RVSSGFVIFGRILPSCFTPD 393
           R++   V+   I  +   PD
Sbjct: 273 RLAEAMVLLKVIEGTNLDPD 292



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 128/270 (47%), Gaps = 22/270 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL +FD M      +P V ++  L   L K +     LSLF  +   G+ P+ +TY+ 
Sbjct: 97  GEALQLFDKMTG-EGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSS 155

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM---EAAALFTKLR 187
           LI+  C +G       +   ++     PD +TF +L+  LC E  I    +A  LF ++ 
Sbjct: 156 LIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMS 215

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G   D  TYNTLI+GLC  G    A+ LF EM      +G +  PD +TY  + D LC
Sbjct: 216 QQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMV----VYGQI--PDLVTYRILFDYLC 269

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K    A  +    +   + L+     + +V            +DG+C+  +L+ AR+LF 
Sbjct: 270 KNHRLAEAMVLLKVIEGTNLDPDIHIYSIV------------MDGMCRAGELEAARDLFS 317

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            L   GL P+V TY I+I GLC  G + E 
Sbjct: 318 KLSSKGLHPDVRTYTIMINGLCQQGLLAEA 347



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 6/188 (3%)

Query: 40  RLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGC 99
           R  + D+ +    +   CK   EG I  +  ++A+ +F+ M + +   P   ++N L   
Sbjct: 179 RKIMPDQLTFNTLVDALCK---EGMIQIM--DKAMGLFEEM-SQQGLIPDTVTYNTLIHG 232

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L         ++LF  + + G  PD  TY IL +  CK  R++   V+L  I  +   PD
Sbjct: 233 LCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPD 292

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
              ++ ++  +C    +  A  LF+KL   G   DV TY  +INGLC+ G    A  LF 
Sbjct: 293 IHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFG 352

Query: 220 EMANGNGE 227
           EM   + E
Sbjct: 353 EMDENDIE 360



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 6/87 (6%)

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P++V ++ L+  +         KHY TV  L+K+++S G+  + YT NILIN FC + R+
Sbjct: 8   PSIVDFSKLLTSIT------RMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRL 61

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIK 402
              F + G IL   + P   TFT+LI+
Sbjct: 62  GFAFSVLGDILKLGYQPSTATFTTLIR 88


>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 450

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 175/331 (52%), Gaps = 27/331 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ ML MR + PPV  FN +    A  KHY T +SL  RL L G+ PD +T NI
Sbjct: 52  DDAVSQFNSMLCMRHT-PPVIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNI 110

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+NCFC MG+++ GF VL +IL+  + P  +TFT+LIK LC + ++ +A     KL   G
Sbjct: 111 LMNCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQG 170

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D  +Y TLING+C+ G T  A+ L  ++       G + +P+   Y+TIID LCK  
Sbjct: 171 IKFDQVSYGTLINGVCKIGDTRGAIKLVRKID------GRLTKPNVEMYNTIIDALCKYQ 224

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             +   G      FS +        +V       ++  +I G CK   +  A  LF+ + 
Sbjct: 225 LVSEAYGL-----FSEMTAKGISANVV-------SYNIMIKGFCKSKMVDEALNLFKEMH 272

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           +  ++P +VTY  L+ GLC  G++        V+ L   ++  G+  D+ TYN LI+  C
Sbjct: 273 QKNMVPTIVTYGSLMDGLCKSGRI------SYVWELIDEMHDRGIPADVITYNSLIDGLC 326

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G +     +F ++    F  D +TFT L+
Sbjct: 327 KNGHLDRAIALFNKMKDXRF--DRLTFTILL 355



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 130/315 (41%), Gaps = 49/315 (15%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  +P   +F  L   L      +  L    +L   G+  D+ +Y  LIN  CK+G    
Sbjct: 134 RGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRG 193

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              ++ +I      P+   + ++I  LC    + EA  LF+++   G   +V +YN +I 
Sbjct: 194 AIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISANVVSYNIMIK 253

Query: 204 GLCRTGHTIVALNLFEEMANGN------------------GEFGVVCE-----------P 234
           G C++     ALNLF+EM   N                  G    V E            
Sbjct: 254 GFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRGIPA 313

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           D ITY+++IDGLCK            +A F+ +    F           L F  L+DGLC
Sbjct: 314 DVITYNSLIDGLCKNGHLDR-----AIALFNKMKDXRFDR---------LTFTILLDGLC 359

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K  +LK A+E+FQ L       +V  YN++I G C  G ++E         +  ++   G
Sbjct: 360 KGGRLKDAQEVFQDLLTKEYDLDVYPYNVMINGYCKQGLLEEA------LTMRSKMEDNG 413

Query: 355 LFPDLYTYNILINCF 369
             P   T+ I+IN  
Sbjct: 414 CIPSAVTFEIIINAL 428



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F  M + +   P + ++  L   L K+     V  L   ++  G+  D  TYN 
Sbjct: 262 DEALNLFKEM-HQKNMVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRGIPADVITYNS 320

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G +     +  ++    F  D +TFT L+  LC   R+ +A  +F  L    
Sbjct: 321 LIDGLCKNGHLDRAIALFNKMKDXRF--DRLTFTILLDGLCKGGRLKDAQEVFQDLLTKE 378

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
            +LDV+ YN +ING C+ G    AL +  +M + NG     C P A+T+  II+ L
Sbjct: 379 YDLDVYPYNVMINGYCKQGLLEEALTMRSKMED-NG-----CIPSAVTFEIIINAL 428



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P V+ +N ++            KHY T   L  RL   G+ PD +T NIL+NCFC +G++
Sbjct: 68  PPVIQFNKILDSFA------XMKHYSTAVSLSHRLELKGIQPDFFTLNILMNCFCHMGQI 121

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + GF +  +IL   + P  +TFT+LIK L
Sbjct: 122 NFGFSVLAKILKRGYQPHTITFTTLIKGL 150



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 2/132 (1%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++N L   L K  H D  ++LF ++       DR T+ IL++  CK GR+     V  
Sbjct: 315 VITYNSLIDGLCKNGHLDRAIALFNKMKDXRF--DRLTFTILLDGLCKGGRLKDAQEVFQ 372

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +L   +  D   +  +I   C +  + EA  + +K+   GC     T+  +IN L    
Sbjct: 373 DLLTKEYDLDVYPYNVMINGYCKQGLLEEALTMRSKMEDNGCIPSAVTFEIIINALFEKD 432

Query: 210 HTIVALNLFEEM 221
               A  L  EM
Sbjct: 433 ENDKAEKLLHEM 444


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 182/385 (47%), Gaps = 59/385 (15%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T +EAL  F+ ML+ +P  P    FN L   +AKTKH+ T+LSL ++++  G+ PD YT 
Sbjct: 25  TLDEALSTFNRMLHKQPP-PSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 83

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            I+IN  C + RV   F  L +IL+    PDA TFT+LI+ LC E +I EA  LF K+  
Sbjct: 84  AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 143

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV------------CE--- 233
            G + +V TY TLINGLC+      A N+F EM        +V            CE   
Sbjct: 144 EGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKH 203

Query: 234 --------------PDAITYSTIIDGLCKEAGSA----------------NFLGFSCMAS 263
                         PD  T +T++D LCKE   A                N + ++ +  
Sbjct: 204 VTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMD 263

Query: 264 FSALNK-----MAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
              L       +  +  +V   C+   +++  LI+G CKI  +  A  LF+ + R  L P
Sbjct: 264 GHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTP 323

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           N VTYN LI GLC+ G++ +         LF  + + G  PDL TY  L +  CK   + 
Sbjct: 324 NTVTYNTLIHGLCHVGRLQDA------ISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLD 377

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
               +   I  S + PD   +T+++
Sbjct: 378 KAMALLKAIEGSNWDPDIQIYTTIL 402



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 168/336 (50%), Gaps = 38/336 (11%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++AL  F+ ML+M P  P    F  L   +AK KHY TVLSL  +++  G+ PD YT 
Sbjct: 561 TLDDALSSFNRMLHMHPP-PSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 619

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NILIN FC + R+ + F VL ++L+  F PD VT+ +L+  LC             K+  
Sbjct: 620 NILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLC-------------KMIT 666

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   D+FTYN+LI+ LC          L  EM N          P+ + +ST++D LCK
Sbjct: 667 KGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSK------IMPNVVVFSTVVDALCK 720

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           E   A         +   ++ M        V+   + +  L+DG C  S++  A ++F +
Sbjct: 721 EGMIA--------IAHDVVDMMIKR----GVEPDVVTYTALMDGHCLRSEMDEAVKVFDT 768

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G +PNV +YNILI G C   +MD+         L ++++  GL  D  TYN LI+ 
Sbjct: 769 MVHKGCVPNVRSYNILINGYCQIQRMDKA------MGLLEQMSLQGLIADTVTYNTLIHG 822

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            C +GR+     +F  ++ S   PD VT+  L+  L
Sbjct: 823 LCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 858



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 163/367 (44%), Gaps = 40/367 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M+  +   P + ++N L   L K   +  V +L   +  + + PD +T N +
Sbjct: 168 EAFNIFSEMIT-KGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 226

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G V+    V+  ++     P+ VT+ +L+   C  + +  A  +F  +    C
Sbjct: 227 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 286

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +V +YNTLING C+      A+ LFEEM+           P+ +TY+T+I GLC    
Sbjct: 287 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE------LTPNTVTYNTLIHGLCHVGR 340

Query: 252 SANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLN------------------------F 286
             + +  F  M +   +  +  Y  L     LC N                        +
Sbjct: 341 LQDAISLFHEMVARGQIPDLVTYRTL--SDYLCKNRHLDKAMALLKAIEGSNWDPDIQIY 398

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             ++DG+C+  +L+ AR+LF +L   GL PNV TYNI+I GLC  G + E         L
Sbjct: 399 TTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASK------L 452

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406
           F  +N  G  P+  TYN++   F +         +   +L   F+ D  T T L+ +L  
Sbjct: 453 FSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSD 512

Query: 407 NSFFRQV 413
           +   + V
Sbjct: 513 DGLDQSV 519



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 163/358 (45%), Gaps = 54/358 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +FD M+     +P V ++  L   L K +      ++F  +   G+ P+  TYN L
Sbjct: 133 EALHLFDKMIG-EGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSL 191

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK+    H   ++  ++ S   PD  T  +++  LC E  + EA  +   +   G 
Sbjct: 192 IHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGV 251

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           E +V TYN L++G C      VA+ +F+ M + +      C  + I+Y+T+I+G CK   
Sbjct: 252 EPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKD------CVANVISYNTLINGYCK--- 302

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
                         +++K  + F  +  Q L  N   +  LI GLC + +L+ A  LF  
Sbjct: 303 ------------IQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHE 350

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMD----------------ETKHYETVF-------- 344
           +   G +P++VTY  L   LC +  +D                + + Y T+         
Sbjct: 351 MVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGE 410

Query: 345 -----LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                 LF  L+S GL P+++TYNI+I+  CK G ++    +F  +  +  +P+  T+
Sbjct: 411 LEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTY 468



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 143/315 (45%), Gaps = 31/315 (9%)

Query: 106 YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           Y T+++   ++   G+ PD +TYN LI+  C +    H   +L  ++ S   P+ V F++
Sbjct: 654 YGTLMNGLCKMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFST 713

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
           ++  LC E  I  A  +   +   G E DV TY  L++G C       A+ +F+ M +  
Sbjct: 714 VVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKG 773

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN 285
                 C P+  +Y+ +I+G C+       +G         L +M+    +       + 
Sbjct: 774 ------CVPNVRSYNILINGYCQIQRMDKAMGL--------LEQMSLQGLIADT----VT 815

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  LI GLC + +L+ A  LF  +  +G +P++VTY IL+  LC      +  H     +
Sbjct: 816 YNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLC------KNHHLAEAMV 869

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL- 404
           L K +  + L  D+  YNI I+  C+ G + +   +F  +      PD  T+  +I  L 
Sbjct: 870 LLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLC 929

Query: 405 ------EINSFFRQV 413
                 E N  FR++
Sbjct: 930 KRGLLDEANKLFRKM 944



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 138/294 (46%), Gaps = 35/294 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L   L     +  V +L   +  + + P+   ++ +++  CK G ++    V
Sbjct: 671 PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDV 730

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +++    PD VT+T+L+   C  S + EA  +F  +   GC  +V +YN LING C+
Sbjct: 731 VDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQ 790

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSA 266
                 A+ L E+M+      G++   D +TY+T+I GLC      + +  F  M +   
Sbjct: 791 IQRMDKAMGLLEQMSLQ----GLIA--DTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQ 844

Query: 267 LNKMAFYFPLVRVQCL----------------------CLNFLCLIDGLCKISKLKIARE 304
           +  +  Y  L+   C                        L +   IDG+C+  +L+ AR+
Sbjct: 845 IPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARD 904

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           LF +L   GL P+V TYNI+I GLC  G +DE         LF++++   ++ +
Sbjct: 905 LFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANK------LFRKMDENDIWSN 952



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 7/180 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ VFD M++ +   P V S+NIL     + +  D  + L ++++L GL  D  TYN 
Sbjct: 760 DEAVKVFDTMVH-KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 818

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C +GR+ H   +   ++ S   PD VT+  L+  LC    + EA  L   +    
Sbjct: 819 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 878

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D+  YN  I+G+CR G    A +LF  +++         +PD  TY+ +I GLCK  
Sbjct: 879 LDADILVYNIAIDGMCRAGELEAARDLFSNLSSKG------LQPDVRTYNIMIHGLCKRG 932



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 7/178 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F+ M + +   P   ++N L   L         +SLF  +   G  PD  TY  
Sbjct: 307 DKAMYLFEEM-SRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 365

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L +  CK   +     +L  I  S + PD   +T+++  +C    + +A  LF+ L   G
Sbjct: 366 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 425

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            + +V+TYN +I+GLC+ G    A  LF EM N NG     C P+  TY+ I  G  +
Sbjct: 426 LQPNVWTYNIMIHGLCKQGLLAEASKLFSEM-NKNG-----CSPNDCTYNLITRGFLR 477



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 101/227 (44%), Gaps = 24/227 (10%)

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           EA + F ++           +N L+  + +T H    L+L  +M      FG+   PD  
Sbjct: 28  EALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQM----DSFGI--PPDVY 81

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           T + +I+ LC      N + F+    FSAL K+      +  Q     F  LI GLC   
Sbjct: 82  TLAIVINSLCH----LNRVDFA----FSALAKIL----KLGHQPDATTFTTLIRGLCVEG 129

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           K+  A  LF  +   G  PNVVTY  LI GLC D Q+ E       F +F  + + G+ P
Sbjct: 130 KIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEA------FNIFSEMITKGISP 183

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++ TYN LI+  CK+        +   ++ S   PD  T  +++  L
Sbjct: 184 NIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDAL 230


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/360 (33%), Positives = 184/360 (51%), Gaps = 49/360 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F  M+  R   PP+  FN +    AK KHY T +SL  RL L G+ PD +T NI
Sbjct: 290 DKALNLFKEMILSR--FPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNI 347

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC MG+++ GF VL +IL+  + P  VT  +LIK LC + ++ +A     KL   G
Sbjct: 348 LINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 407

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
            +L+  +Y TLING+C+ G T  A+ L  ++       G + +P+   YSTIID LCK  
Sbjct: 408 FQLNQVSYATLINGVCKIGDTRGAIKLLRKID------GRLTKPNVEMYSTIIDALCKYQ 461

Query: 249 --------------EAGSANFLGFSCM-----------ASFSALNKMAFYF--PLVRVQC 281
                         +  SA+ + +S +            +   LN+M      P VR   
Sbjct: 462 LVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVR--- 518

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
               +  L+D L K  K+K A+ +   + +A + P+V TYN L+ G     ++ + +H  
Sbjct: 519 ---TYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQH-- 573

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               +F  ++  G+ PD++TY ILIN FCK   V     +F  +      PD VT++SL+
Sbjct: 574 ----VFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLV 629



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 166/344 (48%), Gaps = 34/344 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFG--CLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +EA  +F  M     S   VT   +++G   + K K     + L   + L  + PD  TY
Sbjct: 464 SEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKE---AIGLLNEMVLKTINPDVRTY 520

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            IL++   K G+V     VL  +L++C  PD  T+ +L+        + +A  +F  + +
Sbjct: 521 TILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSL 580

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   DV TY  LING C++     ALNLF+EM   N        PD +TYS+++DGLCK
Sbjct: 581 MGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKN------MVPDTVTYSSLVDGLCK 634

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
            +G  +++       +  +++M        V    + +  LIDGLCK   L  A  LF  
Sbjct: 635 -SGRISYV-------WDLIDEMRDRGQPADV----ITYNSLIDGLCKNGHLDKAIALFNK 682

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G+ PN  T+ IL+ GLC  G++ + +       +F+ L + G   D+Y YN++I  
Sbjct: 683 MKDQGIRPNTFTFTILLDGLCKGGRLKDAQE------VFQDLLTKGYHLDVYIYNVMIYG 736

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            CK G +     +  ++  +   P+AVTF  +     IN+ F++
Sbjct: 737 HCKQGLLEEALTMLSKMEENGCIPNAVTFDII-----INALFKK 775



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 147/321 (45%), Gaps = 24/321 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R ++P V  ++ +   L K +       LF  + + G+  D  TY+ LI  FC +G+
Sbjct: 438 IDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGK 497

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     +L  ++     PD  T+T L+  L  E ++ EA ++   +     + DVFTYNT
Sbjct: 498 LKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNT 557

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           L+NG         A ++F  M+      GV   PD  TY+ +I+G CK       L    
Sbjct: 558 LMNGYLLVYEVKKAQHVFNAMS----LMGVT--PDVHTYTILINGFCKSKMVDEALNL-- 609

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
              F  +++       V        +  L+DGLCK  ++    +L   +   G   +V+T
Sbjct: 610 ---FKEMHQKNMVPDTV-------TYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVIT 659

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN LI GLC +G +D+         LF ++   G+ P+ +T+ IL++  CK GR+     
Sbjct: 660 YNSLIDGLCKNGHLDKA------IALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQE 713

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +F  +L   +  D   +  +I
Sbjct: 714 VFQDLLTKGYHLDVYIYNVMI 734



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 127/275 (46%), Gaps = 47/275 (17%)

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL +IL+  + PD VT  +LIK LC + ++ EA     KL   G +L+  +Y TLING+C
Sbjct: 50  VLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVC 109

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G T  A+    ++       G + +P+   Y+TIID LCK    +   G      FS 
Sbjct: 110 RIGDTRAAIKFLRKID------GRLAKPNVEMYNTIIDALCKYQLVSEAYGL-----FSE 158

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +        +V        +  LI G C + KLK A  L   +    + PNV TYNIL+ 
Sbjct: 159 MTVKGISANVV-------TYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVD 211

Query: 327 GLCNDGQMDETKHYETVFL-----------------------------LFKRLNSTGLFP 357
            LC +G++ E K    V L                             +F  ++  G+ P
Sbjct: 212 ALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTP 271

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           D+++YNI+IN FCKI RV     +F  ++ S F P
Sbjct: 272 DVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPP 306



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 148/336 (44%), Gaps = 30/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFG--CLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +EA  +F  M     S   VT   +++G   + K K     L L   + L  + P+  TY
Sbjct: 150 SEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKE---ALGLLNVMVLKTINPNVCTY 206

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NIL++  CK G+V     VL  +L++C   + +T+++L+        + +A  +F  + +
Sbjct: 207 NILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSL 266

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   DV +YN +ING C+      ALNLF+EM        +   P  I ++ I+D    
Sbjct: 267 MGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMI-------LSRFPPIIQFNKILD---- 315

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                    F+ M  +S    ++    L  +Q        LI+  C + ++     +   
Sbjct: 316 --------SFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAK 367

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + + G  P+ VT N LI+GLC  GQ+ +  H+        +L + G   +  +Y  LIN 
Sbjct: 368 ILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFH------DKLLAQGFQLNQVSYATLING 421

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            CKIG       +  +I      P+   ++++I  L
Sbjct: 422 VCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDAL 457



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 29/295 (9%)

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           +F  ++L G+ PD ++YNI+IN FCK+ RV     +   ++ S F P  + F  ++    
Sbjct: 260 VFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPP-IIQFNKILDSFA 318

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
                  A +L  +L + G + D+FT N LIN  C  G      ++  ++          
Sbjct: 319 KMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRG------ 372

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGF--SCMASFSALNKMAFYFPLVRVQCLCLNFLCL 289
             P  +T +T+I GLC +      L F    +A    LN++++                L
Sbjct: 373 YPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSY--------------ATL 418

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           I+G+CKI   + A +L + +      PNV  Y+ +I  LC    + E       + LF  
Sbjct: 419 INGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEA------YGLFSE 472

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +   G+  D+ TY+ LI  FC +G++     +   ++     PD  T+T L+  L
Sbjct: 473 MTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDAL 527



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 2/148 (1%)

Query: 76  VFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           V+D +  MR    P  V ++N L   L K  H D  ++LF ++   G+ P+ +T+ IL++
Sbjct: 641 VWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLD 700

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK GR+     V   +L   +  D   +  +I   C +  + EA  + +K+   GC  
Sbjct: 701 GLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIP 760

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEM 221
           +  T++ +IN L +      A  L  +M
Sbjct: 761 NAVTFDIIINALFKKDENDKAEKLLRQM 788



 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
           ++  +   + + G  P+ VT N LI+GLC  GQ+ E  H+        +L + G   +  
Sbjct: 46  VSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFH------DKLLAQGFQLNQV 99

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +Y  LIN  C+IG   +      +I      P+   + ++I  L
Sbjct: 100 SYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDAL 143


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 175/348 (50%), Gaps = 29/348 (8%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           KER ++     I  I  N+A+ +F+ M+  RP   P+  FN L   +A+TK YD VL   
Sbjct: 68  KERLRNG----IVDIKVNDAIDLFESMIQSRPLPTPI-DFNRLCSAVARTKQYDLVLGFC 122

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           K + L G+  D YT  I+INC+C+  ++   F VLGR  +  + PD +TF++L+   C E
Sbjct: 123 KGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLE 182

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
            R+ EA AL  ++       D+ T +TLINGLC  G    AL L + M     E+G   +
Sbjct: 183 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMV----EYGF--Q 236

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
           PD +TY  +++ LCK   SA  L           N          ++   + +  +ID L
Sbjct: 237 PDEVTYGPVLNRLCKSGNSA--LALDLFRKMEERN----------IKASVVQYSIVIDSL 284

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK      A  LF  +   G+  +VVTY+ LI GLCNDG+ D+         + + +   
Sbjct: 285 CKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAK------MLREMIGR 338

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + PD+ T++ LI+ F K G++     ++  ++     PD +T+ SLI
Sbjct: 339 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLI 386



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 164/359 (45%), Gaps = 48/359 (13%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +F  M   R  +  V  ++I+   L K   +D  LSLF  + + G+  D  TY+ LI
Sbjct: 258 ALDLFRKM-EERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLI 316

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              C  G+   G  +L  ++     PD VTF++LI     E +++EA  L+ ++   G  
Sbjct: 317 GGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIA 376

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D  TYN+LI+G C+      A  +F+ M +        CEPD +TYS +I+  CK    
Sbjct: 377 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKG------CEPDIVTYSILINSYCKAKRV 430

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
            +      M  F  ++        +    L L F       C+  KL  A+ELFQ +   
Sbjct: 431 DD-----GMRLFREISSKGLIPNTITYNTLVLGF-------CQSGKLNAAKELFQEMVSR 478

Query: 313 GLMPNVVTYNILIRGLCNDGQMDE-----------------------------TKHYETV 343
           G+ P+VVTY IL+ GLC++G++++                                 +  
Sbjct: 479 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDA 538

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + LF  L+  G+ PD+ TYN++I   CK G +S   ++F ++     TPD  T+  LI+
Sbjct: 539 WSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIR 597



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A  +F  M++ R   P V ++ IL   L      +  L +F+++  + +      YNI
Sbjct: 466 NAAKELFQEMVS-RGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNI 524

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  C   +V   + +   +      PD VT+  +I  LC +  + EA  LF K++  G
Sbjct: 525 IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 584

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC--EPDAITYSTIIDGLCK 248
           C  D FTYN LI         I ++ L EEM         VC    D+ T   +ID L  
Sbjct: 585 CTPDDFTYNILIRAHLGGSGLISSVELIEEMK--------VCGFSADSSTIKMVIDMLSD 636

Query: 249 EAGSANFL 256
                +FL
Sbjct: 637 RRLDKSFL 644


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 175/364 (48%), Gaps = 49/364 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKT-KHYDTVLSLFKRLNLTGLFPDRYTYN 129
           ++AL  F++ML+  P  P +  F  L   + K  ++Y  V+SL K++ L GL PD YT +
Sbjct: 76  DDALASFNHMLHREP-LPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLS 134

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           ILI+CF  + RV   F V  ++++    PDAVTF +LI  LC   +  +A   F      
Sbjct: 135 ILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEAS 194

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           GC+  V+TY T+INGLC+ G T  A  LF++M          C+P+ +TY+ +ID LCK+
Sbjct: 195 GCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAG------CQPNVVTYNILIDSLCKD 248

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                 L    +  FS       Y    R+      +  LI GLC   + K A  L   +
Sbjct: 249 K-----LVNEALDIFS-------YMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEM 296

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKH----------------YETVFL-------- 345
               +MPN+ T+N+L+  +C +G++ E +                 Y ++          
Sbjct: 297 TSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEI 356

Query: 346 -----LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                LF  + + G  PD ++YNILI  +CK  R+     +F  ++    TPD V + +L
Sbjct: 357 VEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTL 416

Query: 401 IKIL 404
           I  L
Sbjct: 417 IHGL 420



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 153/321 (47%), Gaps = 30/321 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++NIL   L K K  +  L +F  +    + PD +TYN LI   C   R      
Sbjct: 232 QPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASA 291

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +      P+  TF  L+  +C E ++ EA  +F  +   G E DV TY++L+ G  
Sbjct: 292 LLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYS 351

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                + A  LF+ M          C+PDA +Y+ +I G CK                  
Sbjct: 352 LRMEIVEARKLFDAMITKG------CKPDAFSYNILIKGYCKA---------------KR 390

Query: 267 LNKMAFYFPLVRVQCLC---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +++    F  +  Q L    +N+  LI GLC++ +L+ A++LF+++   G +P++ TY++
Sbjct: 391 IDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSM 450

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L+ G C +G + +       F LF+ + ST L PD+  YNILI+  CK G +     +F 
Sbjct: 451 LLDGFCKEGYLGK------AFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFS 504

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +      P+   +T++I  L
Sbjct: 505 ELFVQGLLPNVQIYTTIINNL 525



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 155/359 (43%), Gaps = 52/359 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEAL +F YM   R S P + ++N L   L   + +    +L   +    + P+ +T+N+
Sbjct: 252 NEALDIFSYMKAKRIS-PDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNV 310

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G+VS    V   +      PD VT++SL+        I+EA  LF  +   G
Sbjct: 311 LVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKG 370

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM---------ANGNGEFGVVCE-------- 233
           C+ D F+YN LI G C+      A  LF EM          N N     +C+        
Sbjct: 371 CKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQ 430

Query: 234 ------------PDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRV 279
                       PD  TYS ++DG CKE   G A F  F  M S      +A Y      
Sbjct: 431 DLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKA-FRLFRVMQSTYLKPDIAMYN----- 484

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                    LID +CK   LK AR+LF  L   GL+PNV  Y  +I  LC +G +DE   
Sbjct: 485 --------ILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDE--- 533

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  F+ +   G  PD ++YN++I  F +    S    + G +    F  +A T T
Sbjct: 534 ---ALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAEAGTTT 589



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 4/152 (2%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++++L     K  +      LF+ +  T L PD   YNILI+  CK G +     +
Sbjct: 443 PDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKL 502

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      P+   +T++I +LC E  + EA   F  +   GC  D F+YN +I G  +
Sbjct: 503 FSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQ 562

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
                 A  L  EM +     G V E    T+
Sbjct: 563 YKDESRAAQLIGEMRDR----GFVAEAGTTTW 590


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 175/348 (50%), Gaps = 29/348 (8%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           KER ++     I  I  N+A+ +F+ M+  RP   P+  FN L   +A+TK YD VL   
Sbjct: 39  KERLRNG----IVDIKVNDAIDLFESMIQSRPLPTPI-DFNRLCSAVARTKQYDLVLGFC 93

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           K + L G+  D YT  I+INC+C+  ++   F VLGR  +  + PD +TF++L+   C E
Sbjct: 94  KGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLE 153

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
            R+ EA AL  ++       D+ T +TLINGLC  G    AL L + M     E+G   +
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMV----EYGF--Q 207

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
           PD +TY  +++ LCK   SA  L           N          ++   + +  +ID L
Sbjct: 208 PDEVTYGPVLNRLCKSGNSA--LALDLFRKMEERN----------IKASVVQYSIVIDSL 255

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK      A  LF  +   G+  +VVTY+ LI GLCNDG+ D+         + + +   
Sbjct: 256 CKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAK------MLREMIGR 309

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + PD+ T++ LI+ F K G++     ++  ++     PD +T+ SLI
Sbjct: 310 NIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLI 357



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 159/348 (45%), Gaps = 47/348 (13%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  +  V  ++I+   L K   +D  LSLF  + + G+  D  TY+ LI   C  G+   
Sbjct: 239 RNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDD 298

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
           G  +L  ++     PD VTF++LI     E +++EA  L+ ++   G   D  TYN+LI+
Sbjct: 299 GAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID 358

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C+      A  +F+ M +        CEPD +TYS +I+  CK     +      M  
Sbjct: 359 GFCKENCLHEANQMFDLMVSKG------CEPDIVTYSILINSYCKAKRVDD-----GMRL 407

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F  ++        +    L L F       C+  KL  A+ELFQ +   G+ P+VVTY I
Sbjct: 408 FREISSKGLIPNTITYNTLVLGF-------CQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460

Query: 324 LIRGLCNDGQMDE-----------------------------TKHYETVFLLFKRLNSTG 354
           L+ GLC++G++++                                 +  + LF  L+  G
Sbjct: 461 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG 520

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + PD+ TYN++I   CK G +S   ++F ++     TPD  T+  LI+
Sbjct: 521 VKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIR 568



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 11/188 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A  +F  M++ R   P V ++ IL   L      +  L +F+++  + +      YNI
Sbjct: 437 NAAKELFQEMVS-RGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNI 495

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  C   +V   + +   +      PD VT+  +I  LC +  + EA  LF K++  G
Sbjct: 496 IIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC--EPDAITYSTIIDGLCK 248
           C  D FTYN LI         I ++ L EEM         VC    D+ T   +ID L  
Sbjct: 556 CTPDDFTYNILIRAHLGGSGLISSVELIEEMK--------VCGFSADSSTIKMVIDMLSD 607

Query: 249 EAGSANFL 256
                +FL
Sbjct: 608 RRLDKSFL 615


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/348 (32%), Positives = 182/348 (52%), Gaps = 29/348 (8%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           KER ++     I  I  NEA+ +F+ M+  RP  P +  F+ LF  +A+ K YD VL   
Sbjct: 38  KERLRNG----IVDIKVNEAIDLFESMIQSRP-LPSLIDFSKLFSAVARRKEYDLVLGFC 92

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           K ++L G+  + YT NI+INCFC+  ++   F V+GR L+  F P+ +TF++LI   C E
Sbjct: 93  KEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLE 152

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
            R+ EA AL  ++       +V T NTLINGLC  G    AL L + M     ++G  CE
Sbjct: 153 GRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMV----KYG--CE 206

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
            + ITY  +++ +CK   +A  L       F  + + +    +V+       +  +ID L
Sbjct: 207 ANEITYGPVLNRMCKSGNTALALDL-----FRKMEERSIKASVVQ-------YSIVIDSL 254

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK   L  A  LF  +   G+  +VV Y+ +I GLCNDG+ D+         + + +   
Sbjct: 255 CKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAK------MLREMIGR 308

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + P++ T++ LI+ F K G++     ++  ++     PD +T++SLI
Sbjct: 309 NIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLI 356



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 151/318 (47%), Gaps = 24/318 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  +  V  ++I+   L K  + D  LSLF  + + G+  D   Y+ +I   C  GR   
Sbjct: 238 RSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDD 297

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
           G  +L  ++     P+ VTF++LI     E +++EA  L+ ++   G   D  TY++LI+
Sbjct: 298 GAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLID 357

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C+      A  + + M +        CEP+ +TYS +I+  CK     N +   C  S
Sbjct: 358 GFCKENRLGEANQMLDLMVSKG------CEPNIVTYSILINSYCKAKRVDNGMRLFCEIS 411

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              L                + +  L+ G C+  KL +A+ELFQ +   G+ P+VVTY I
Sbjct: 412 SKGL------------VADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGI 459

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L+ GLC++G++      +    +F+++  + +   +  YNI+I+  C   +V   + +F 
Sbjct: 460 LLDGLCDNGEL------QKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFC 513

Query: 384 RILPSCFTPDAVTFTSLI 401
            +      PD +T+  +I
Sbjct: 514 SLSVKGVKPDVLTYNVMI 531



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 168/333 (50%), Gaps = 27/333 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F+ M  M+  +  V +++ + G L     +D    + + +    + P+  T++ 
Sbjct: 261 DDALSLFNEM-EMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSA 319

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F K G++     +   ++     PD +T++SLI   C E+R+ EA  +   +   G
Sbjct: 320 LIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKG 379

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           CE ++ TY+ LIN  C+       + LF E+++     G+V   D +TY+T++ G C ++
Sbjct: 380 CEPNIVTYSILINSYCKAKRVDNGMRLFCEISSK----GLV--ADTVTYNTLVQGFC-QS 432

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
           G  N            + K  F   + R V    + +  L+DGLC   +L+ A E+F+ +
Sbjct: 433 GKLN------------VAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKM 480

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            ++ ++  +  YNI+I G+CN  ++D+       + LF  L+  G+ PD+ TYN++I   
Sbjct: 481 QKSRMILGIGIYNIIIHGMCNASKVDDA------WSLFCSLSVKGVKPDVLTYNVMIGGL 534

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           CK G +S   ++F ++      P   T+  LI+
Sbjct: 535 CKKGSLSEADMLFRKMKEDGCAPSDCTYNILIR 567



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 142/320 (44%), Gaps = 30/320 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F+ L     K         L+  +   G+ PD  TY+ LI+ FCK  R+     +
Sbjct: 312 PNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQM 371

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     P+ VT++ LI   C   R+     LF ++   G   D  TYNTL+ G C+
Sbjct: 372 LDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQ 431

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +G   VA  LF+EM +     GV   P  +TY  ++DGLC                   L
Sbjct: 432 SGKLNVAKELFQEMVS----RGV--PPSVVTYGILLDGLCDNG---------------EL 470

Query: 268 NKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            K    F  ++   + L    +  +I G+C  SK+  A  LF SL   G+ P+V+TYN++
Sbjct: 471 QKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVM 530

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I GLC  G + E        +LF+++   G  P   TYNILI        V S   +   
Sbjct: 531 IGGLCKKGSLSEAD------MLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEE 584

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           +    F  DA T   ++ +L
Sbjct: 585 MKMRGFAADASTIKMVVVML 604



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 104/252 (41%), Gaps = 26/252 (10%)

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
           SC +   V++   +++   + ++ EA  LF  +        +  ++ L + + R     +
Sbjct: 28  SCISEAKVSYKERLRNGIVDIKVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDL 87

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK-MAF 272
            L   +EM + NG      E +  T + +I+  C++           + +FS + + + F
Sbjct: 88  VLGFCKEM-DLNG-----IEHNMYTMNIMINCFCRKR--------KLLFAFSVVGRALKF 133

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
            F     +   + F  LI+G C   ++  A  L   +      PNVVT N LI GLC  G
Sbjct: 134 GF-----EPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKG 188

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           ++ E        +L  R+   G   +  TY  ++N  CK G  +    +F ++       
Sbjct: 189 RVTEA------LVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKA 242

Query: 393 DAVTFTSLIKIL 404
             V ++ +I  L
Sbjct: 243 SVVQYSIVIDSL 254


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 177/338 (52%), Gaps = 25/338 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           + S+  NEAL +F +M+  RP  P +  F  L   +AK K +D V++L   L + G+  D
Sbjct: 48  LHSLQFNEALDLFTHMVESRP-LPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHD 106

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            YT N+L+NCFC+  +       LG++++  F PD VTFTSLI   C  +R+ EA ++  
Sbjct: 107 LYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVN 166

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           ++   G + DV  Y T+I+ LC+ GH   AL+LF++M N    +G+   PD + Y+++++
Sbjct: 167 QMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMEN----YGI--RPDVVMYTSLVN 220

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           GLC      +        + S L  M       +++   + F  LID   K  K   A E
Sbjct: 221 GLCNSGRWRD--------ADSLLRGMTKR----KIKPDVITFNALIDAFVKEGKFLDAEE 268

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L+  + R  + PN+ TY  LI G C +G +DE +       +F  + + G FPD+  Y  
Sbjct: 269 LYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQ------MFYLMETKGCFPDVVAYTS 322

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           LIN FCK  +V     IF  +     T + +T+T+LI+
Sbjct: 323 LINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQ 360



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 167/396 (42%), Gaps = 68/396 (17%)

Query: 52  FLKERCKSSGEGDITSITP-----------NEALCVFDYMLNMRPSRPPVTSFNILFGCL 100
           FL +  K   E DI + T             EA+ + + M+ M   +P V  +  +   L
Sbjct: 129 FLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM-GIKPDVVMYTTIIDSL 187

Query: 101 AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 160
            K  H +  LSLF ++   G+ PD   Y  L+N  C  GR      +L  + +    PD 
Sbjct: 188 CKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDV 247

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220
           +TF +LI     E + ++A  L+ ++       ++FTY +LING C  G    A  +F  
Sbjct: 248 ITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYL 307

Query: 221 MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQ 280
           M          C PD + Y+++I+G CK           C     A+ K+ +      + 
Sbjct: 308 METKG------CFPDVVAYTSLINGFCK-----------CKKVDDAM-KIFYEMSQKGLT 349

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
              + +  LI G  ++ K  +A+E+F  +   G+ PN+ TYN+L+  LC +G++   K  
Sbjct: 350 GNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKV---KKA 406

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILI---------------------------------- 366
             +F   ++    G+ P+++TYN+L+                                  
Sbjct: 407 LMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTII 466

Query: 367 -NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               CK G+V +   +F  +      P+ VT+T++I
Sbjct: 467 IQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMI 502



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 151/353 (42%), Gaps = 56/353 (15%)

Query: 8   NGRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASL--EQFLKERCKSSGEGDI 65
           +GR R AD L R  T    + +P   T  A +   VK+   L  E+   E  +       
Sbjct: 225 SGRWRDADSLLRGMTKR--KIKPDVITFNALIDAFVKEGKFLDAEELYNEMIR------- 275

Query: 66  TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
            SI PN    +F Y          +  F  + GC+      D    +F  +   G FPD 
Sbjct: 276 MSIAPN----IFTY-------TSLINGF-CMEGCV------DEARQMFYLMETKGCFPDV 317

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
             Y  LIN FCK  +V     +   + +   T + +T+T+LI+      +   A  +F+ 
Sbjct: 318 VAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSH 377

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +   G   ++ TYN L++ LC  G    AL +FE+M     + GV   P+  TY+ ++ G
Sbjct: 378 MVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMD-GVA--PNIWTYNVLLHG 434

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVR---VQCLCLNFLCLIDGLCKISKLKIA 302
           LC                   L K    F  +R   +    + +  +I G+CK  K+K A
Sbjct: 435 LCYNG---------------KLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNA 479

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
             LF SLP  G+ PNVVTY  +I GL  +G     KH   V  LF+++   G+
Sbjct: 480 VNLFCSLPSKGVKPNVVTYTTMISGLFREG----LKHEAHV--LFRKMKEDGV 526



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 6/121 (4%)

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           ++F  L++ + K+ K  +   L   L   G+  ++ T N+L+   C   Q     +  + 
Sbjct: 73  IDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQ----PYLASS 128

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           FL   ++   G  PD+ T+  LIN FC   R+     +  +++     PD V +T++I  
Sbjct: 129 FL--GKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDS 186

Query: 404 L 404
           L
Sbjct: 187 L 187


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 113/336 (33%), Positives = 174/336 (51%), Gaps = 25/336 (7%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           S+  +EA+ +F  M+  RP  P +  F+ L   +AK+K+YD V+SLF  + + G+  D Y
Sbjct: 47  SMNLDEAIDLFCNMIQSRP-LPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLY 105

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           TYNI+INC C+  R      V+G++++  + PD VT +SLI   C  +R+  A  L +K+
Sbjct: 106 TYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKM 165

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
               C+LDV  YNT+I+G C+TG    AL LF  M       GV    D +TY++++ GL
Sbjct: 166 EEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERD----GV--RADTVTYNSLVTGL 219

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
           C            C    S   ++     +  +    + F  LI+   +  K   A++ +
Sbjct: 220 C------------CSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFY 267

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           + + R  + P+V TYN +I GLC  GQ+DE K       +   + + G FPD+ TYN LI
Sbjct: 268 EEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQ------ILDLMVTKGCFPDVVTYNTLI 321

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           N FCK  RV  G  +   +       D VTF ++I+
Sbjct: 322 NGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQ 357



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 144/312 (46%), Gaps = 27/312 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  +N +     KT   +  L LF R+   G+  D  TYN L+   C  GR S    ++ 
Sbjct: 174 VVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMR 233

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P+ +TFT+LI     E + +EA   + ++     + DVFTYN++I+GLC  G
Sbjct: 234 DMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHG 293

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A  + + M          C PD +TY+T+I+G CK                    K
Sbjct: 294 QVDEAKQILDLMVTKG------CFPDVVTYNTLINGFCKTK------------RVDEGTK 335

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           +        +    + F  +I G  +  +   A+E+F    R G  PN+ TY+IL+ GLC
Sbjct: 336 LVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFS---RMGSRPNIRTYSILLYGLC 392

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
            + ++      E   +LF+ +  + +  D+ TYNI+I+  C IG V   + +F  +    
Sbjct: 393 YNWRV------EKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKG 446

Query: 390 FTPDAVTFTSLI 401
             PD VT+T++I
Sbjct: 447 LEPDVVTYTTMI 458



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 142/301 (47%), Gaps = 28/301 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N AL +F  M      R    ++N L   L  +        L + + +  + P+  T+  
Sbjct: 191 NNALVLFGRM-ERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTA 249

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN F + G+          ++R C  PD  T+ S+I  LC   ++ EA  +   +   G
Sbjct: 250 LINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKG 309

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  DV TYNTLING C+T        L  EM+    + G+V   D +T++TII G   +A
Sbjct: 310 CFPDVVTYNTLINGFCKTKRVDEGTKLVREMS----QRGLVV--DTVTFNTIIQGYF-QA 362

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G  +       A+    ++M    P +R   +      L+ GLC   +++ A  LF+S+ 
Sbjct: 363 GRPD-------AAQEIFSRMGSR-PNIRTYSI------LLYGLCYNWRVEKALVLFESMQ 408

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           ++ +  ++ TYNI+I G+C  G +      E  + LF  L+  GL PD+ TY  +I+ FC
Sbjct: 409 KSEMELDITTYNIVIHGMCMIGNV------EDAWDLFCSLSFKGLEPDVVTYTTMISGFC 462

Query: 371 K 371
           +
Sbjct: 463 R 463



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 29/276 (10%)

Query: 83  MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142
           MR   P V +F  L     +   +      ++ +    + PD +TYN +I+  C  G+V 
Sbjct: 237 MRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVD 296

Query: 143 HGFVVLG-RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
               +L   + + CF PD VT+ +LI   C   R+ E   L  ++   G  +D  T+NT+
Sbjct: 297 EAKQILDLMVTKGCF-PDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTI 355

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           I G  + G    A  +F  M +          P+  TYS ++ GLC      N+     +
Sbjct: 356 IQGYFQAGRPDAAQEIFSRMGS---------RPNIRTYSILLYGLC-----YNWRVEKAL 401

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
             F ++ K      +         +  +I G+C I  ++ A +LF SL   GL P+VVTY
Sbjct: 402 VLFESMQKSEMELDIT-------TYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTY 454

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
             +I G C        + ++    L++++   GL P
Sbjct: 455 TTMISGFC------RKRLWDKADFLYRKMQEDGLLP 484


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/414 (29%), Positives = 194/414 (46%), Gaps = 57/414 (13%)

Query: 21  PTSSISENEPSYPTTTATLRLTVKDRASLEQFL---KERCKSSGEGDITSITPNEALCVF 77
           P+ ++     S+ T +  +   ++  ++  QFL   + +CKS   G + SI  +EAL  F
Sbjct: 9   PSPALHIPLHSHCTKSTNINHEIQSHSNKTQFLNFMRNQCKS---GKLKSI--DEALNFF 63

Query: 78  DYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDRYTYNILINCFC 136
             M  M P  P V  F +L G + K KHY T +SL K ++ + G+ PD +  N++IN  C
Sbjct: 64  HTMAKMNP-LPSVIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGIKPDTFILNVVINSLC 122

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
            +  V+ GF VLG +L+    P  VTFT LI  LC +  +  A  L   +   G   DV 
Sbjct: 123 HLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVK 182

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           TY  LINGLC+ G T  A+    +M   N        P+ + YST++DGLCK+   +  L
Sbjct: 183 TYGVLINGLCKMGKTSEAVGWLRKMEERN------WNPNVVVYSTVMDGLCKDGLVSEAL 236

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
           G     S               ++   + + CLI GLC   + K A  L   + + G+MP
Sbjct: 237 GLCLEMSGKG------------IKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMP 284

Query: 317 NVVTYNILIRGLCNDGQMDETK-----------------------------HYETVFLLF 347
           ++ + NIL+  LC +G++ + K                               +    +F
Sbjct: 285 DLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVF 344

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + + S G  PD+  Y  LI+ +CKI  ++    +   ++   FTPD VT+T+LI
Sbjct: 345 ELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLI 398



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 153/316 (48%), Gaps = 24/316 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++  L   L     +    SL   +   G+ PD  + NIL++  CK G++     
Sbjct: 248 KPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKS 307

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V+G ++     PD  T+ SLI   C ++++ EA  +F  +   GC  D+  Y +LI+G C
Sbjct: 308 VIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWC 367

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +  +   A++L +EM        V   PD +T++T+I G C+       +G    A    
Sbjct: 368 KIKNINKAMHLLDEM------IKVGFTPDVVTWTTLIGGFCQ-------VGRPLAAKELF 414

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           LN M  Y  +  +Q   +    ++DGLCK   L  A  LF ++ ++ L  N+V Y+I++ 
Sbjct: 415 LN-MHKYGQVPNLQTCAI----ILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILD 469

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G+C+ G+++      T   LF  L + GL  ++Y Y I+IN F K G +     +   + 
Sbjct: 470 GMCSAGKLN------TALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNME 523

Query: 387 PSCFTPDAVTFTSLIK 402
            +   PD+ T+   ++
Sbjct: 524 ENGCMPDSCTYNVFVQ 539



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 144/323 (44%), Gaps = 33/323 (10%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  SL   +   CK   EG I      +A  V  +M+ +    P V ++N L        
Sbjct: 285 DLQSLNILVDVLCK---EGKIM-----QAKSVIGFMI-LVGEVPDVFTYNSLIDRYCLQN 335

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
             D    +F+ +   G  PD   Y  LI+ +CK+  ++    +L  +++  FTPD VT+T
Sbjct: 336 QMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWT 395

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           +LI   C   R + A  LF  +  +G   ++ T   +++GLC++     AL+LF  M   
Sbjct: 396 TLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKS 455

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL 284
           N +  +V       YS I+DG+C  AG  N    + +  FS L       P   +Q    
Sbjct: 456 NLDLNIV------IYSIILDGMC-SAGKLN----TALELFSCL-------PAKGLQINVY 497

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  +I+G  K   L  A +L  ++   G MP+  TYN+ ++GL  + ++  +  Y T+ 
Sbjct: 498 AYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTM- 556

Query: 345 LLFKRLNSTGLFPDLYTYNILIN 367
                +   G   D  T  ++IN
Sbjct: 557 -----MRDKGFSVDATTTEMIIN 574



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F  M         V  ++I+   +      +T L LF  L   GL  + Y Y I
Sbjct: 443 SEALSLFHAMEKSNLDLNIVI-YSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTI 501

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN F K G +     +L  +  +   PD+ T+   ++ L AE  I  +    T +R  G
Sbjct: 502 MINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKG 561

Query: 191 CELDVFTYNTLINGL 205
             +D  T   +IN L
Sbjct: 562 FSVDATTTEMIINYL 576


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 113/360 (31%), Positives = 181/360 (50%), Gaps = 47/360 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+++L+MR    P+  FN +   L K  H+ T +S  K++ L  + PD +T+NI
Sbjct: 45  DDAVSSFNHILHMRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNI 104

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC +G ++  F VL +I +  F PD VT T+LIK LC   ++ EA      +   G
Sbjct: 105 LINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKG 164

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             LD  +Y TLINGLC+TG T  AL +  ++       G++ +P+ + Y+TIID LCK+ 
Sbjct: 165 FHLDQVSYGTLINGLCKTGETRAALQVLRKID------GLLVQPNVVMYNTIIDSLCKDK 218

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                +  S + S   + ++   FP V      + +  LI G   + +LK A  LF  + 
Sbjct: 219 L---VIHASDLCSEMIVKRI---FPDV------VTYTTLIYGCLIVGRLKEAVGLFNQML 266

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL------------------------- 345
              + P+V T+NIL+ GLC +G+M + ++   V +                         
Sbjct: 267 LKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQEN 326

Query: 346 ----LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               +F  +   G+ PD+ +Y+I+IN  CK   V     +F  +      P+ VT+ SLI
Sbjct: 327 KATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLI 386



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 158/315 (50%), Gaps = 25/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           VT   +++GCL   +  + V  LF ++ L  + PD YT+NIL++  CK G +     VL 
Sbjct: 240 VTYTTLIYGCLIVGRLKEAV-GLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLA 298

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +++     + VT+ SL+       +  +A  +F  +   G   DV +Y+ +INGLC+T 
Sbjct: 299 VMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTK 358

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+NLF+EM + +        P+ +TY+++IDGL K    ++        ++  +N+
Sbjct: 359 MVDEAVNLFKEMHSKS------MAPNTVTYNSLIDGLLKYGRISD--------AWDLVNE 404

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           M        V    + +  L+D LCK  ++  A  L   +   G+ PN+ TY IL+ GLC
Sbjct: 405 MHNRGQPADV----ITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLC 460

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
            +G++ + +       +++ L   G   D+  YN+++N  CK G       +  ++  + 
Sbjct: 461 KNGRLKDAQ------AVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNG 514

Query: 390 FTPDAVTFTSLIKIL 404
             PDAVT+ +L++ L
Sbjct: 515 CIPDAVTYETLVRAL 529



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 151/335 (45%), Gaps = 37/335 (11%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            S+  L   L KT      L + ++++   + P+   YN +I+  CK   V H   +   
Sbjct: 170 VSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSE 229

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           ++     PD VT+T+LI       R+ EA  LF ++ +   + DV+T+N L++GLC+ G 
Sbjct: 230 MIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGE 289

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG--LCKEAGSANFLGFSCMASFSALN 268
              A N+   M       GV  + + +TY++++DG  L K+   A F+ F+ MA      
Sbjct: 290 MKKARNVLAVMIKQ----GV--DSNIVTYNSLMDGYFLVKQENKATFV-FNTMARRGVTP 342

Query: 269 KMAFYFPLVRVQCLC----------------------LNFLCLIDGLCKISKLKIARELF 306
            +  Y  ++   C                        + +  LIDGL K  ++  A +L 
Sbjct: 343 DVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLV 402

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G   +V+TY+ L+  LC + Q+D+         L  ++   G+ P++YTY IL+
Sbjct: 403 NEMHNRGQPADVITYSSLLDALCKNHQVDKA------ITLITKIKDQGIQPNIYTYTILV 456

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +  CK GR+     ++  +L   +  D   +  ++
Sbjct: 457 DGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMV 491



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 31/298 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ +F+ ML ++  +P V +FNIL   L K        ++   +   G+  +  TYN L
Sbjct: 257 EAVGLFNQML-LKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSL 315

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ +  + + +    V   + R   TPD  +++ +I  LC    + EA  LF ++     
Sbjct: 316 MDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSM 375

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  TYN+LI+GL + G    A +L  EM N  G+       D ITYS+++D LCK   
Sbjct: 376 APNTVTYNSLIDGLLKYGRISDAWDLVNEMHN-RGQ-----PADVITYSSLLDALCKN-- 427

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
                          ++K       ++ Q +  N   +  L+DGLCK  +LK A+ ++Q 
Sbjct: 428 -------------HQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQD 474

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           L   G   +V  YN+++ GLC +G  DE         L  ++   G  PD  TY  L+
Sbjct: 475 LLIKGYHLDVKMYNVMVNGLCKEGLFDEA------LSLVSKMEDNGCIPDAVTYETLV 526



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 96/180 (53%), Gaps = 7/180 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  VF+ M   R   P V S++I+   L KTK  D  ++LFK ++   + P+  TYN 
Sbjct: 326 NKATFVFNTMAR-RGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNS 384

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+   K GR+S  + ++  +       D +T++SL+  LC   ++ +A  L TK++  G
Sbjct: 385 LIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQG 444

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + +++TY  L++GLC+ G    A  +++++             D   Y+ +++GLCKE 
Sbjct: 445 IQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHL------DVKMYNVMVNGLCKEG 498



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 64/141 (45%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R     V +++ L   L K    D  ++L  ++   G+ P+ YTY IL++  CK GR
Sbjct: 405 MHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGR 464

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     V   +L   +  D   +  ++  LC E    EA +L +K+   GC  D  TY T
Sbjct: 465 LKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYET 524

Query: 201 LINGLCRTGHTIVALNLFEEM 221
           L+  L        A+ L  EM
Sbjct: 525 LVRALFENDKNDKAVKLLREM 545



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 44/74 (59%)

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
           H+ T     K++    + PDL+T+NILINCFC +G ++  F +  +I    F PD VT T
Sbjct: 79  HFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTIT 138

Query: 399 SLIKILEINSFFRQ 412
           +LIK L +N   R+
Sbjct: 139 TLIKGLCLNGKVRE 152



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 6/129 (4%)

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
           L ++Q     F  LI+  C +  L  A  +   + + G  P+ VT   LI+GLC +G++ 
Sbjct: 92  LKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVR 151

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           E  H+    +      + G   D  +Y  LIN  CK G   +   +  +I      P+ V
Sbjct: 152 EALHFHDDVI------AKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVV 205

Query: 396 TFTSLIKIL 404
            + ++I  L
Sbjct: 206 MYNTIIDSL 214



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 50/104 (48%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++ IL   L K        ++++ L + G   D   YN+++N  CK G       
Sbjct: 446 QPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALS 505

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++ ++  +   PDAVT+ +L++ L    +  +A  L  ++ V G
Sbjct: 506 LVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQG 549


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 169/332 (50%), Gaps = 26/332 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYN 129
           +EAL +F  M  M+P  P V  F +L G + + KHY T +SL K + +  G+  D  T N
Sbjct: 58  DEALDLFQGMARMKP-LPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEADTITLN 116

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           I+INC C++  V+ GF VLG + +    P  +T T+LI  LC +  + +A  L   +   
Sbjct: 117 IVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKM 176

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
              LDV+TY  LINGLC+TG T+ A+    +M   N       +P+ + YSTI+DGLCK+
Sbjct: 177 WYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERN------WKPNVVVYSTIMDGLCKD 230

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              +  L        S +N       LV        + CLI GLC   + K A  L   +
Sbjct: 231 GLVSEALNLC-----SEMNGKGVRPNLV-------TYACLIQGLCNFGRWKEAGSLLDEM 278

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            + G+ P++   NIL+   C +G++ + K      +L      TG  PD++TYN LI+ +
Sbjct: 279 MKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMIL------TGEGPDVFTYNSLIHIY 332

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           C   +++    +F  ++     PD V FTSLI
Sbjct: 333 CLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLI 364



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 150/337 (44%), Gaps = 25/337 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + D M+ M   RP +   NIL     K        S+   + LTG  PD +TYN L
Sbjct: 270 EAGSLLDEMMKM-GMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSL 328

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ +C   +++    V   ++     PD V FTSLI   C +  I +A  L  ++   G 
Sbjct: 329 IHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGF 388

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV T+ TLI G C+ G  + A  LF  M     ++G V  P+  T + I+DGLCKE  
Sbjct: 389 VPDVATWTTLIGGFCQAGRPLAAKELFLNMH----KYGQV--PNLQTCAVILDGLCKE-- 440

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             N L    ++   A+ K      +V        +  L+DG+C   KL  A ELF SLP 
Sbjct: 441 --NLLS-EAVSLAKAMEKSNLDLNIVI-------YSILLDGMCSAGKLNAAWELFSSLPG 490

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL  NV  Y I+I+GLC  G +D+ +       L   +   G  P+  TYN+ +     
Sbjct: 491 KGLQINVYIYTIMIKGLCKQGSLDKAED------LLINMEENGCLPNNCTYNVFVQGLLT 544

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
              ++        +    F+ DA T   +I  L  N 
Sbjct: 545 KKEIARSIKYLTIMRDKGFSVDAATTEFIINYLSTNE 581



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 26/241 (10%)

Query: 167 IKDLCAESR---IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           +++LC   +   I EA  LF  +        V  +  L+  + R  H   A++L + M +
Sbjct: 45  MRNLCWSGKLKNIDEALDLFQGMARMKPLPSVKDFTLLLGAIVRLKHYTTAISLVKHMFS 104

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
             G      E D IT + +I+ LC+    A   GFS + +   L           ++   
Sbjct: 105 SLG-----IEADTITLNIVINCLCRLKLVA--FGFSVLGTMFKLG----------LEPTV 147

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           +    LI+GLC    +  A  L   + +     +V TY +LI GLC  G       +   
Sbjct: 148 MTLTTLINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGW--- 204

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
               +++      P++  Y+ +++  CK G VS    +   +      P+ VT+  LI+ 
Sbjct: 205 ---LRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQG 261

Query: 404 L 404
           L
Sbjct: 262 L 262


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 186/373 (49%), Gaps = 69/373 (18%)

Query: 44  KDR---ASLEQF-LKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGC 99
           +DR   AS + F ++++CK     +      ++AL  F+ M++M P  P +T FN L   
Sbjct: 60  RDRHKDASFDNFAVRDKCKGGSFSNF-----DDALAYFNQMVHMNPF-PCITQFNQLLAA 113

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L + KHYD+V+S+++++   G+    YT  ILINC C +  V  GF VLG+I +  F P 
Sbjct: 114 LVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPS 173

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            +TF +LI  LC E RI+EA      +   G +  V+T+  ++NGLC+ G T  A+   +
Sbjct: 174 IITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMK 233

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           +M   +      CEP+ ++YS IID LCK                   N++         
Sbjct: 234 KMVELD------CEPEVVSYSIIIDSLCK-------------------NRL--------- 259

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                              +  A +LF  +   G+ P VVTYN LI G+CN GQ      
Sbjct: 260 -------------------VNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQ------ 294

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
           ++   +LFK +    + PD+ T++IL++  CK G V     +FG+++     PD VT++S
Sbjct: 295 WKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSS 354

Query: 400 LIKILEINSFFRQ 412
           LI  +  +S +++
Sbjct: 355 LIHGVCKSSLWKE 367



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 151/338 (44%), Gaps = 35/338 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + +FN L   L         +     +   G  P  YT+ +++N  CK+G+ S   V
Sbjct: 171 KPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIV 230

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            + +++     P+ V+++ +I  LC    + EA  LF  +R  G    V TYN+LI G+C
Sbjct: 231 WMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMC 290

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFS 265
            +G    A  LF+EM   N       +PD +T+S ++D LCKE      L  F  M   +
Sbjct: 291 NSGQWKQASILFKEMLEWN------MKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIA 344

Query: 266 ALNKMAFYFPLVRVQCL----------------------CLNFLCLIDGLCKISKLKIAR 303
               +  Y  L+   C                        + F   +D  CK   +  A+
Sbjct: 345 MEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQ 404

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            +   +   GL PNVVTYN L+ G C   QMDE +       +F  + + G  PD+ +YN
Sbjct: 405 SIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARK------VFDIMVNKGCAPDVLSYN 458

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ILI  +CK  R+     +F  +     TP+++T T+LI
Sbjct: 459 ILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLI 496



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 156/315 (49%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V S++I+   L K +  +  + LF  +   G+ P   TYN LI   C  G+     +
Sbjct: 241 EPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASI 300

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L     PD VTF+ L+  LC E  ++EA ++F K+     E D+ TY++LI+G+C
Sbjct: 301 LFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVC 360

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           ++     +  L  EM + N        PD +T+S  +D  CK+   +         + S 
Sbjct: 361 KSSLWKESSTLLNEMLSRN------IRPDVVTFSIWVDVFCKKGMVSE--------AQSI 406

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +N M      +R   +  N   L+DG C  S++  AR++F  +   G  P+V++YNILI+
Sbjct: 407 INLMIERG--LRPNVVTYN--SLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIK 462

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C   ++DE K       LF  ++  GL P+  T+  LI+  C+ GR  +   +F ++ 
Sbjct: 463 GYCKSERIDEAKQ------LFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMG 516

Query: 387 PSCFTPDAVTFTSLI 401
                PD +T+++L+
Sbjct: 517 SHGCPPDLITYSTLL 531



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 158/328 (48%), Gaps = 31/328 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA+ +F +M ++  S P V ++N L   +  +  +     LFK +    + PD  T++I
Sbjct: 261 NEAVDLFYHMRSIGIS-PTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSI 319

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G V     V G++++    PD VT++SLI  +C  S   E++ L  ++    
Sbjct: 320 LVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRN 379

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV T++  ++  C+ G    A ++   M     E G+   P+ +TY++++DG C   
Sbjct: 380 IRPDVVTFSIWVDVFCKKGMVSEAQSIINLMI----ERGL--RPNVVTYNSLMDGYCLH- 432

Query: 251 GSANFLGFSCMASFSALNKMAFYFP-LVRVQCL--CLNFLCLIDGLCKISKLKIARELFQ 307
                         S +++    F  +V   C    L++  LI G CK  ++  A++LF 
Sbjct: 433 --------------SQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFD 478

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +   GL PN +T+  LI GLC  G+    K       LFK++ S G  PDL TY+ L++
Sbjct: 479 EMSHKGLTPNSITHTTLISGLCQAGRPYAAKE------LFKKMGSHGCPPDLITYSTLLS 532

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAV 395
            FCK G +     +F  +  S   P+ V
Sbjct: 533 GFCKHGHLDEALALFEALKKSQLKPNHV 560



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 139/288 (48%), Gaps = 25/288 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL VF  M+ +    P + +++ L   + K+  +    +L   +    + PD  T++I 
Sbjct: 332 EALSVFGKMIQI-AMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIW 390

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ FCK G VS    ++  ++     P+ VT+ SL+   C  S++ EA  +F  +   GC
Sbjct: 391 VDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGC 450

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV +YN LI G C++     A  LF+EM++          P++IT++T+I GLC +AG
Sbjct: 451 APDVLSYNILIKGYCKSERIDEAKQLFDEMSHKG------LTPNSITHTTLISGLC-QAG 503

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                 ++    F  +        L+        +  L+ G CK   L  A  LF++L +
Sbjct: 504 RP----YAAKELFKKMGSHGCPPDLI-------TYSTLLSGFCKHGHLDEALALFEALKK 552

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
           + L PN V   IL+ G+C  G++++ K       LF  L+   L PD+
Sbjct: 553 SQLKPNHVICKILLGGMCKAGKLEDAKE------LFSSLSIEELQPDV 594



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 7/178 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + + M+  R  RP V ++N L          D    +F  +   G  PD  +YNI
Sbjct: 401 SEAQSIINLMIE-RGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNI 459

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  +CK  R+     +   +     TP+++T T+LI  LC   R   A  LF K+   G
Sbjct: 460 LIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHG 519

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           C  D+ TY+TL++G C+ GH   AL LFE +           +P+ +    ++ G+CK
Sbjct: 520 CPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQ------LKPNHVICKILLGGMCK 571


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  187 bits (475), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 123/390 (31%), Positives = 185/390 (47%), Gaps = 67/390 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A+  F+ ML MRP  PP+  F  + G L KTKHY  V+ LF+R+ L G+  +  T NI
Sbjct: 31  NDAIDSFNRMLRMRPP-PPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNI 89

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN +C + +++  F V  +IL+  + PD +T+T+LI+ LC   ++ E+     +L   G
Sbjct: 90  LINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQG 149

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +LD  +Y TLINGLC+ G T  AL L  ++       G +C PD + Y+TIIDGLCK+ 
Sbjct: 150 IKLDHVSYGTLINGLCKIGQTGPALRLLRKIE------GEICRPDVVMYNTIIDGLCKDK 203

Query: 251 GSANFLGFSCM---------------------------ASFSALNKMAFYFPLVRVQCLC 283
              +     C                             +F  LN+M     L  V    
Sbjct: 204 LVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMV----LKNVNPNV 259

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG--LCND---------- 331
             F  L+DGLCK  K++ A+ L   + + G+ P+V TYN L+ G  L  +          
Sbjct: 260 CTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNI 319

Query: 332 -GQMDET----------------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
             QM  T                K  +    LF+ + +  + PD+  Y+ LI+  CK GR
Sbjct: 320 MAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGR 379

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++S       +      P+ +T+TSLI  L
Sbjct: 380 INSALKYVDEMHDRGQPPNVITYTSLIDAL 409



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 155/338 (45%), Gaps = 31/338 (9%)

Query: 77  FDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           FD    M   R  P V ++  L          D    L   + L  + P+  T+N L++ 
Sbjct: 209 FDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDG 268

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            CK G++     ++  +++    PD  T+ +L+          +A  +F  +   G   D
Sbjct: 269 LCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCD 328

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           V +Y+ +I+GL +      A++LFE M N N    V+  PD + YS++IDGLCK +G  N
Sbjct: 329 VHSYSVMISGLSKMKMLDEAMDLFEGMRNEN----VI--PDVVAYSSLIDGLCK-SGRIN 381

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                  ++   +++M        V    + +  LID LCK  ++  A  L + +   G+
Sbjct: 382 -------SALKYVDEMHDRGQPPNV----ITYTSLIDALCKSHQVDKAIALLKKIKDQGI 430

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
             N+ TYNIL+ GLC DG++ + +       +F+ L   G   D+ TY+I+IN  CK   
Sbjct: 431 QANMYTYNILVDGLCKDGRLTDAQK------VFQDLLMKGHNVDVVTYSIMINGLCKESL 484

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                 +  ++      PDA+ + ++     IN+FF +
Sbjct: 485 FDEALTLLSKMEDKGCVPDAIAYETI-----INAFFEK 517



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 7/175 (4%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F+ M N     P V +++ L   L K+   ++ L     ++  G  P+  TY  
Sbjct: 346 DEAMDLFEGMRN-ENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTS 404

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK  +V     +L +I       +  T+  L+  LC + R+ +A  +F  L + G
Sbjct: 405 LIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKG 464

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
             +DV TY+ +INGLC+      AL L  +M +        C PDAI Y TII+ 
Sbjct: 465 HNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKG------CVPDAIAYETIINA 513



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 1/153 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N AL   D M + R   P V ++  L   L K+   D  ++L K++   G+  + YTYNI
Sbjct: 381 NSALKYVDEMHD-RGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNI 439

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK GR++    V   +L      D VT++ +I  LC ES   EA  L +K+   G
Sbjct: 440 LVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKG 499

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           C  D   Y T+IN          A  L  EM +
Sbjct: 500 CVPDAIAYETIINAFFEKDMNDKAEKLLREMID 532



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 118/283 (41%), Gaps = 37/283 (13%)

Query: 83  MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF---CKMG 139
           ++   P V +FN L   L K        SL   +   G+ PD +TYN L++ +    + G
Sbjct: 252 LKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAG 311

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           +  + F ++ ++  +C   D  +++ +I  L     + EA  LF  +R      DV  Y+
Sbjct: 312 KAKNVFNIMAQMGVTC---DVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYS 368

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           +LI+GLC++G    AL   +EM +  G+      P+ ITY+++ID LCK       +   
Sbjct: 369 SLIDGLCKSGRINSALKYVDEMHD-RGQ-----PPNVITYTSLIDALCKSHQVDKAIALL 422

Query: 260 CMASFSALNKMAFYFPLVRVQCLC------------------------LNFLCLIDGLCK 295
                  +    + + ++ V  LC                        + +  +I+GLCK
Sbjct: 423 KKIKDQGIQANMYTYNIL-VDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCK 481

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
            S    A  L   +   G +P+ + Y  +I         D+ +
Sbjct: 482 ESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAE 524



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 51/81 (62%)

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G + +TKHY  V  LF+R+   G+  +  T NILIN +C + +++S F +F +IL   + 
Sbjct: 57  GSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQ 116

Query: 392 PDAVTFTSLIKILEINSFFRQ 412
           PD +T+T+LI+ L +N   ++
Sbjct: 117 PDIITYTTLIRGLCLNGQVKE 137


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 184/385 (47%), Gaps = 59/385 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ +F+ +L   P+ PP   F  + G L K+KHY TVLSLF+++   G+ P+   +NIL
Sbjct: 53  DAVSLFNCLLRQNPT-PPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNIL 111

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           INCFC++G +   F VL +IL+  + PD +T  + IK  C + +I +A     KL   G 
Sbjct: 112 INCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGF 171

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            LD  +Y TLINGLC+ G T  AL L   +       G + + D + YSTIID +CK+  
Sbjct: 172 HLDQVSYGTLINGLCKVGETRAALELLRRVD------GKLVQLDVVMYSTIIDSMCKDKN 225

Query: 252 SAN-FLGFSCMASFSALNKMAFYFPLVRVQCL----------------------CLNFLC 288
             + F  +S M S    + +  Y  L+   C+                         F  
Sbjct: 226 VNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNI 285

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC--NDGQMDET--------- 337
           L+D  CK  ++K A+     + + G+ P++VTYN L+ G C  N+  M ++         
Sbjct: 286 LVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRG 345

Query: 338 ------------------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                             K  +    LFK ++   +FP++ TYN LI+  CK GR+S   
Sbjct: 346 VTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYAL 405

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            +   +      PD +T++S++  L
Sbjct: 406 ELIDLMHDRGQQPDIITYSSILDAL 430



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 157/337 (46%), Gaps = 37/337 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  ++  M++ R S   VT   ++ G     K  D +  LF ++    + PD YT+NI
Sbjct: 227 NDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAI-GLFNKMTSENINPDVYTFNI 285

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ FCK GRV      L  +++    PD VT+ SL+   C  + +  A ++   +   G
Sbjct: 286 LVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRG 345

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
               V +YN +ING C+      A+ LF+EM +          P+ ITY+++IDGLCK  
Sbjct: 346 VTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQ------IFPNVITYNSLIDGLCKSG 399

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRV------QCLCLNFLCLIDGLCKISKLKIARE 304
                             ++++   L+ +      Q   + +  ++D LCK   +  A  
Sbjct: 400 ------------------RISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIA 441

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L   L   G+ PN+ TY ILI GLC  G++++ ++      +F+ L   G    + TY +
Sbjct: 442 LLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARN------IFEDLLVKGYNLTVNTYTV 495

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +I  FC  G       +  ++  +   PDA+T+  +I
Sbjct: 496 MIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIII 532



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 143/313 (45%), Gaps = 24/313 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  ++ +   + K K+ +    L+  +    +  +  TY+ LI+ FC +G++     +  
Sbjct: 210 VVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFN 269

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           ++      PD  TF  L+   C E R+ EA      +   G + D+ TYN+L++G C   
Sbjct: 270 KMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYC--- 326

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
             +  +N+ + + N     GV       +Y+ +I+G CK       +    M  F  ++ 
Sbjct: 327 -LVNEVNMAKSILNTMSHRGVTAT--VRSYNIVINGFCKIK-----MVDQAMKLFKEMHH 378

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
               FP V      + +  LIDGLCK  ++  A EL   +   G  P+++TY+ ++  LC
Sbjct: 379 KQI-FPNV------ITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALC 431

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
            +  +D+         L  +L   G+ P++YTY ILI+  CK GR+     IF  +L   
Sbjct: 432 KNHLVDKA------IALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKG 485

Query: 390 FTPDAVTFTSLIK 402
           +     T+T +I+
Sbjct: 486 YNLTVNTYTVMIQ 498



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 124/297 (41%), Gaps = 27/297 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL + D M + R  +P + +++ +   L K    D  ++L  +L   G+ P+ YTY ILI
Sbjct: 404 ALELIDLMHD-RGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILI 462

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK GR+     +   +L   +     T+T +I+  C+     EA +L +K++   C 
Sbjct: 463 DGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCI 522

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D  TY  +I  L        A  L  EM    G      E  + + S +       A  
Sbjct: 523 PDAITYEIIICSLFDKDENDKAEKLLREMIT-RGLLYSFLEYGSWSLSFM-------AAP 574

Query: 253 ANFL---GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS- 308
           A+FL      C +S  + N       L R+ C C+    L     +   ++    +  S 
Sbjct: 575 AHFLNNDSLQCTSSQESGNWAKLL--LERIYCDCV----LTKSNMRDKDVECPSVIIYST 628

Query: 309 --LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
               + G + +V TY ++I+G C+ G  DE+        L  ++   G  PD  TY+
Sbjct: 629 CDWSKQGYILDVNTYTVMIQGFCSHGLFDES------LALLSKMEVNGCIPDAVTYD 679


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 180/358 (50%), Gaps = 44/358 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ ML MR + P +  F  + G L K KH+ T +SL K++ + G+ PD  T +I
Sbjct: 114 HDAVSQFNGMLLMR-NTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSI 172

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC +G+++  F VLG+IL+  + P+ +  T+L+K LC +  + ++     K+   G
Sbjct: 173 LINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQG 232

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
            +++  +Y TL+NGLC+ G T  A+ L   + + +        PD + Y+TIIDGLCK  
Sbjct: 233 FQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRS------TRPDVVMYNTIIDGLCKDK 286

Query: 249 ----------EAGSANF---------------LGFSCMASFSALNKMAFYFPLVRVQCLC 283
                     E  S                  L    M +FS LN+M     L  +    
Sbjct: 287 LVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMT----LKNINPDV 342

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             +  LID LCK  KLK A+ L   + + G+ PNVVTY+ L+ G C  G++   K     
Sbjct: 343 YTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQ---- 398

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +F  +  T + P + +YNI+IN  CK   V     +   +L     P+ VT+ SLI
Sbjct: 399 --IFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLI 454



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 158/360 (43%), Gaps = 59/360 (16%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  R +RP V  +N +   L K K  +     +  +N  G+FPD  TY+ LI  FC  G
Sbjct: 262 MIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAG 321

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++   F +L  +      PD  T+T LI  LC E ++ EA  L   +   G + +V TY+
Sbjct: 322 QLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYS 381

Query: 200 TLINGLCRTG---------HTIV--------------------------ALNLFEEMANG 224
           TL++G C  G         H +V                          A+NL  EM + 
Sbjct: 382 TLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHK 441

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL 284
           N    VV  P+ +TY+++IDGLCK     + L    M       + A            +
Sbjct: 442 N----VV--PNTVTYNSLIDGLCKSGRITSALDL--MKELHHRGQPAD----------VI 483

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  L+DGLCK   L  A  LF  +   G+ PN  TY  LI GLC   ++   +      
Sbjct: 484 TYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQK----- 538

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            LF+ +   G   D+YTYN++I   CK G +     +  ++  +   PDAVTF  +I+ L
Sbjct: 539 -LFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSL 597



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 145/361 (40%), Gaps = 90/361 (24%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD--LCA----- 172
           G+ P+  T +ILINC   +G+++  F VLG+IL+  + P+++T T+L+K    CA     
Sbjct: 6   GIVPNLVTLSILINCLRHLGQMAFSFSVLGKILKLGYQPNSITLTTLMKGETRCAIKLPR 65

Query: 173 --ESR------------------------------------------IMEAAALFTKLRV 188
             E R                                          + +A + F  + +
Sbjct: 66  MIEDRSTRPLMWLSSSLSHSIPNFPPFLPNPTFPFYFHSQPPSIHDVVHDAVSQFNGMLL 125

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
                 +  +  ++  L +  H   A++L ++M           EPD +T S +I+  C 
Sbjct: 126 MRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKG------IEPDLVTLSILINCFC- 178

Query: 249 EAGSANFLGFSCMASFSAL----------------------NKMAFYFPLVRVQCLCLN- 285
             G   F  FS +     L                       K   +   V  Q   +N 
Sbjct: 179 HLGQMAF-SFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQ 237

Query: 286 --FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             +  L++GLCKI + + A +L + +      P+VV YN +I GLC D  ++E   + T 
Sbjct: 238 VSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYT- 296

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
                 +NS G+FPD+ TY+ LI  FC  G++   F +   +      PD  T+T LI  
Sbjct: 297 -----EMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDA 351

Query: 404 L 404
           L
Sbjct: 352 L 352



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 65/141 (46%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L+ R     V ++  L   L K ++ D  ++LF ++   G+ P++YTY  LI+  CK  R
Sbjct: 473 LHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGAR 532

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           + +   +   IL      D  T+  +I  LC E  + EA A+ +K+   GC  D  T+  
Sbjct: 533 LKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEI 592

Query: 201 LINGLCRTGHTIVALNLFEEM 221
           +I  L        A  L  EM
Sbjct: 593 IIRSLFEKDENDKAEKLLHEM 613


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/377 (31%), Positives = 191/377 (50%), Gaps = 51/377 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL  F  ML +R   P +  F+ LF  + +  HY+TV+ L K +   G+  D ++ +I
Sbjct: 44  DDALASFRLML-LRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSI 102

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC + RV  G  VL +IL+    P  VTFT+L+  LC E ++ +   L+  + V G
Sbjct: 103 LINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRG 162

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--- 247
            + +V+TYN +IN L ++G    AL   ++M        V C P+ + YST+IDG C   
Sbjct: 163 LQPNVYTYNVIINSLSKSGKANEALGFLKQMEK------VGCVPNVVNYSTLIDGYCLRG 216

Query: 248 --KEAGSANFLGFSCMAS-------FSALNKMAFYFPLVR----VQCL-----------C 283
              EA S     F  M S       ++  + M  Y  + R    VQ L            
Sbjct: 217 QMDEARSV----FDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDI 272

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           + F  +I GLC+  +   A++LF+ +   G  PN++TY +L+ GLC  G ++E       
Sbjct: 273 VTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEA------ 326

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK- 402
           F LF+ +  + + P+L  Y ILI+  CK G++  G  +F R++     P+  T+T+L+  
Sbjct: 327 FALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGA 386

Query: 403 ------ILEINSFFRQV 413
                 I+E +  FR++
Sbjct: 387 LCKEGLIIEAHKLFRKM 403



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 153/319 (47%), Gaps = 30/319 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P + +F  L   L      D V+ L+  + + GL P+ YTYN++IN   K G+ +    
Sbjct: 129 EPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALG 188

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L ++ +    P+ V +++LI   C   ++ EA ++F  +   GC  +V+TY +L+NG C
Sbjct: 189 FLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYC 248

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---GSANFLGFSCMAS 263
           +      A+ L +E        G+V  PD +T++TII GLC+      +     + C   
Sbjct: 249 KIERIEEAVQLLDETLRK----GLV--PDIVTFTTIISGLCRAGRPLAAQQLFRYICAHG 302

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            +  N M +                L+DGLCK   L+ A  LFQ + R+ + PN+V Y I
Sbjct: 303 HTP-NIMTYGV--------------LLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTI 347

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI  LC  G++ + K       LF RL   GL P++YTY  L+   CK G +     +F 
Sbjct: 348 LIDSLCKCGKIKDGKE------LFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFR 401

Query: 384 RILPSCFTPDAVTFTSLIK 402
           ++     TPD   +  +I+
Sbjct: 402 KMEEDGCTPDKCAYNVIIQ 420



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 153/328 (46%), Gaps = 29/328 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++ + ++D ML +R  +P V ++N++   L+K+   +  L   K++   G  P+   Y+ 
Sbjct: 149 DQVMMLYDDML-VRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYST 207

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ +C  G++     V   ++    TP+  T+TSL+   C   RI EA  L  +    G
Sbjct: 208 LIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKG 267

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKE 249
              D+ T+ T+I+GLCR G  + A  LF  + A+G+        P+ +TY  ++DGLCK 
Sbjct: 268 LVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGH-------TPNIMTYGVLLDGLCKH 320

Query: 250 AG-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                 F  F  M   +    +  Y               LID LCK  K+K  +ELF  
Sbjct: 321 GNLEEAFALFQEMQRSTVKPNLVIY-------------TILIDSLCKCGKIKDGKELFSR 367

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   GL PNV TY  L+  LC +G + E         LF+++   G  PD   YN++I  
Sbjct: 368 LIDEGLKPNVYTYTALVGALCKEGLIIEAHK------LFRKMEEDGCTPDKCAYNVIIQG 421

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVT 396
           F +    S    +   ++   F+ DA T
Sbjct: 422 FLQHKDPSMARQLVEEMVNRGFSADAAT 449


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/332 (33%), Positives = 180/332 (54%), Gaps = 25/332 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEAL +F  M++ RP  P +  F  L   +AK K +D V+SLF+++ + G+ P  YT NI
Sbjct: 64  NEALDLFTRMVHSRP-LPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNI 122

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++NC C+  +       LG++++  F PD VTFTSL+   C  +RI +A ALF ++   G
Sbjct: 123 VMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMG 182

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +V TY TLI+ LC+  H   A+ +F +M    G+ G+   P+ +TY++++ GLC+  
Sbjct: 183 FRPNVVTYTTLIHCLCKNRHLNHAVEIFNQM----GDNGI--RPNVVTYNSLVSGLCE-- 234

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                +G    A++   + M        +Q   + F  LID   K+ K+  A+EL++ + 
Sbjct: 235 -----IGRWSDAAWLLRDMMK-----RGIQPNVITFTALIDAFVKVGKIMEAKELYKVMI 284

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           +  + P+V TY  LI GLC  G++DE +       +F  + S G +P+  TY  LI+ FC
Sbjct: 285 QMSVYPDVFTYTALINGLCTYGRLDEARQ------MFYLMESNGYYPNEVTYTTLIHGFC 338

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           K  RV  G  IF  +       + +T+T LI+
Sbjct: 339 KSKRVEDGTKIFYEMSQKGLVANTITYTVLIQ 370



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 173/353 (49%), Gaps = 40/353 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL +FD ++ M   RP V ++  L  CL K +H +  + +F ++   G+ P+  TYN L
Sbjct: 170 DALALFDQIVGM-GFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSL 228

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  C++GR S    +L  +++    P+ +TFT+LI       +IMEA  L+  +     
Sbjct: 229 VSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSV 288

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--- 248
             DVFTY  LINGLC  G    A  +F  M + NG +     P+ +TY+T+I G CK   
Sbjct: 289 YPDVFTYTALINGLCTYGRLDEARQMFYLMES-NGYY-----PNEVTYTTLIHGFCKSKR 342

Query: 249 -EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
            E G+  F   S     +                  + +  LI G C + +  +A+E+F 
Sbjct: 343 VEDGTKIFYEMSQKGLVAN----------------TITYTVLIQGYCLVGRPDVAQEVFN 386

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +      P++ TYN+L+ GLC +G      + E   ++FK +    +  ++ TY I+I 
Sbjct: 387 QMGSRRAPPDIRTYNVLLDGLCYNG------YVEKALMIFKYMRKREMDINIVTYTIIIQ 440

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-------ILEINSFFRQV 413
             CK+G+V   F +F  +      P+ +T+T++I        I E ++ F+++
Sbjct: 441 GMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKM 493



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 126/278 (45%), Gaps = 30/278 (10%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  +P V +F  L     K         L+K +    ++PD +TY  LIN  C  GR+  
Sbjct: 251 RGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDE 310

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   +  + + P+ VT+T+LI   C   R+ +   +F ++   G   +  TY  LI 
Sbjct: 311 ARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQ 370

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C  G   VA  +F +M +          PD  TY+ ++DGLC       + G+     
Sbjct: 371 GYCLVGRPDVAQEVFNQMGSRRA------PPDIRTYNVLLDGLC-------YNGY----- 412

Query: 264 FSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
              + K    F  +R + + +N   +  +I G+CK+ K++ A +LF SL   G+ PNV+T
Sbjct: 413 ---VEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVIT 469

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           Y  +I G C  G + E         LFK++   G  P+
Sbjct: 470 YTTMISGFCRRGFIHEAD------ALFKKMKEDGFLPN 501



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P+ A  VF+ M   R + P + ++N+L   L    + +  L +FK +    +  +  TY 
Sbjct: 378 PDVAQEVFNQM-GSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYT 436

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           I+I   CK+G+V   F +   +      P+ +T+T++I   C    I EA ALF K++  
Sbjct: 437 IIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKED 496

Query: 190 G 190
           G
Sbjct: 497 G 497



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 6/121 (4%)

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           ++F  L+  + K+ +  +   LF+ +   G+ P + T NI++  +C   Q        + 
Sbjct: 83  VDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRA----SC 138

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           FL   ++   G  PDL T+  L++ FC   R+     +F +I+   F P+ VT+T+LI  
Sbjct: 139 FL--GKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHC 196

Query: 404 L 404
           L
Sbjct: 197 L 197


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 183/384 (47%), Gaps = 65/384 (16%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ +F+ +L+  P+      FN + G L K+KHY TVLSL +++   G+ P+  T+NILI
Sbjct: 52  AVSLFNSLLHQNPTLTAF-EFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILI 110

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           NCFC++G +   F VL +IL+  + PD +T  + IK  C + +I +A     KL   G  
Sbjct: 111 NCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFH 170

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           LD  +Y TLINGLC+ G T  AL L   +       G + + +A+ Y+T+IDG+ K+   
Sbjct: 171 LDQVSYGTLINGLCKVGETRAALQLLRRVD------GKLVQLNAVMYNTVIDGMSKDKHV 224

Query: 253 AN-FLGFSCMASFSALNKMAFYFPLVR----------------------VQCLCLNFLCL 289
            + F  +S M +      +  Y  L+R                      ++     F  L
Sbjct: 225 NDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNIL 284

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL--- 346
           +DG CK  +LK A+ +   +    + PNV T+N L+ G C D +M E K   TVF +   
Sbjct: 285 VDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGK---TVFAMMMK 341

Query: 347 -----------------------------FKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
                                        F  ++  G+  ++++YNI+IN FCKI +V  
Sbjct: 342 QGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDK 401

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
              +F  +      PD VT+ SLI
Sbjct: 402 AMKLFIEMHHKHIIPDVVTYNSLI 425



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 150/314 (47%), Gaps = 24/314 (7%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            S+  L   L K       L L +R++   +  +   YN +I+   K   V+  F +   
Sbjct: 174 VSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSE 233

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           ++    +PD VT+++LI+      ++ +A  LF K+ +   + DV+T+N L++G C+ G 
Sbjct: 234 MVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGR 293

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A N+ + M   +       +P+  T++T++DG CK+              F+ + K 
Sbjct: 294 LKKAKNVLDMMMIQD------IKPNVSTFNTLVDGFCKDRKMK-----EGKTVFAMMMKQ 342

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
               P V   C       L+DG C + ++  A+++F ++ + G+  NV +YNI+I G C 
Sbjct: 343 GIK-PNVVTYC------SLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCK 395

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
             ++D+         LF  ++   + PD+ TYN LI+  CK G++S  F +   +     
Sbjct: 396 IKKVDKAMK------LFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQ 449

Query: 391 TPDAVTFTSLIKIL 404
            P+ +T+ S++  L
Sbjct: 450 PPNIITYNSILNAL 463



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 143/317 (45%), Gaps = 47/317 (14%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N +   ++K KH +    L+  +    + PD  TY+ LI  F  +G++     +  +++
Sbjct: 211 YNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMI 270

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                PD  TF  L+   C E R+ +A  +   + +   + +V T+NTL++G C+     
Sbjct: 271 LENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKD---- 326

Query: 213 VALNLFEEMANGNGEFGVV----CEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSA 266
                  +M  G   F ++     +P+ +TY +++DG C  K+   A  + F+ M+    
Sbjct: 327 ------RKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKI-FNTMSQRGV 379

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
              +  Y               +I+G CKI K+  A +LF  +    ++P+VVTYN LI 
Sbjct: 380 TANVHSYN-------------IMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLID 426

Query: 327 GLCNDG------QMDETKH----------YETVF-LLFKRLNSTGLFPDLYTYNILINCF 369
           GLC  G      Q+    H          Y ++   L  +L   G+ P+++T  ILI   
Sbjct: 427 GLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNALLTKLKDQGIQPNMHTDTILIKGL 486

Query: 370 CKIGRVSSGFVIFGRIL 386
           C+ G++ +   +F  +L
Sbjct: 487 CQSGKLEAARKVFEDLL 503



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 127/267 (47%), Gaps = 31/267 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ +F+ M+ +   +P V +FNIL     K        ++   + +  + P+  T+N L
Sbjct: 261 DAIDLFNKMI-LENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTL 319

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ FCK  ++  G  V   +++    P+ VT+ SL+   C   ++ +A  +F  +   G 
Sbjct: 320 VDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGV 379

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +V +YN +ING C+      A+ LF EM + +        PD +TY+++IDGLCK +G
Sbjct: 380 TANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKH------IIPDVVTYNSLIDGLCK-SG 432

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             ++       +F  +N+M       R Q   +           I+   I   L   L  
Sbjct: 433 KISY-------AFQLVNEMH-----DRGQPPNI-----------ITYNSILNALLTKLKD 469

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETK 338
            G+ PN+ T  ILI+GLC  G+++  +
Sbjct: 470 QGIQPNMHTDTILIKGLCQSGKLEAAR 496



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 24/173 (13%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           E   VF  M+  +  +P V ++  L       K  +    +F  ++  G+  + ++YNI+
Sbjct: 331 EGKTVFAMMMK-QGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIM 389

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA------------ 179
           IN FCK+ +V     +   +      PD VT+ SLI  LC   +I  A            
Sbjct: 390 INGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQ 449

Query: 180 -----------AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
                       AL TKL+  G + ++ T   LI GLC++G    A  +FE++
Sbjct: 450 PPNIITYNSILNALLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVFEDL 502



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 44/71 (61%)

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G + ++KHY TV  L +++   G+ P+  T+NILINCFC++G +   F +  +IL   + 
Sbjct: 76  GSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYE 135

Query: 392 PDAVTFTSLIK 402
           PD +T  + IK
Sbjct: 136 PDIITLNTFIK 146



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 24/141 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  +F+ M + R     V S+NI+     K K  D  + LF  ++   + PD  TYN 
Sbjct: 365 NKAKKIFNTM-SQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNS 423

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS-----------------------LI 167
           LI+  CK G++S+ F ++  +      P+ +T+ S                       LI
Sbjct: 424 LIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNALLTKLKDQGIQPNMHTDTILI 483

Query: 168 KDLCAESRIMEAAALFTKLRV 188
           K LC   ++  A  +F  L V
Sbjct: 484 KGLCQSGKLEAARKVFEDLLV 504


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/381 (32%), Positives = 185/381 (48%), Gaps = 59/381 (15%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++AL  F  ML+M P  PP+  F  L   +AK KHY TVLSL K+++  G+ PD YT 
Sbjct: 36  TLDDALSSFHRMLHMHPP-PPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTL 94

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            I+IN FC + RV     VL +IL+    PD  TFT+L++ LC   +I EA  +F K+  
Sbjct: 95  TIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVG 154

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANG--------NGEFGVVCE------ 233
            G + +V TY TL+NGLC+      ALNLF EM A G        N     +C       
Sbjct: 155 EGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKH 214

Query: 234 --------------PDAITYSTIIDGLCKEAGSANFLGFSCM----------ASFSAL-- 267
                         P+ ++ + ++D LCKE           M           +++AL  
Sbjct: 215 VTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMD 274

Query: 268 ---------NKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
                      +  +  +VR  C+C  +++  LI+G CKI ++  A  LF+ + R  L+P
Sbjct: 275 GHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIP 334

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           N +TY+ LI GLC+ G++ +         LF  + + G  P+L TY+IL++  CK  R++
Sbjct: 335 NTMTYSTLIHGLCHVGRLQDA------IALFNEMVACGQIPNLVTYSILLDYLCKNHRLA 388

Query: 377 SGFVIFGRILPSCFTPDAVTF 397
               +   I  S   PD   +
Sbjct: 389 EAMALLKAIEGSNLDPDVQVY 409



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 168/367 (45%), Gaps = 40/367 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +F  M+  +   P + ++N L   L     +  V +L   +  + + P+  + NI+
Sbjct: 179 EALNLFSEMI-AKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIV 237

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G+V+    V+  +++    PD VT+ +L+   C  S + EA  +F  +   GC
Sbjct: 238 VDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGC 297

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +V +YNTLING C+      A+ LFEEM            P+ +TYST+I GLC    
Sbjct: 298 VCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQE------LIPNTMTYSTLIHGLCHVGR 351

Query: 252 SANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLN------------------------F 286
             + +  F+ M +   +  +  Y  L+    LC N                        +
Sbjct: 352 LQDAIALFNEMVACGQIPNLVTYSILLDY--LCKNHRLAEAMALLKAIEGSNLDPDVQVY 409

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
              IDG+C+   L+ AR+LF +L   GL P+V T+NI+IRGLC  G +DE         L
Sbjct: 410 NIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASK------L 463

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406
           F+ ++  G   +  TYN +     +  + S    +   +L   F+ D  T   L+K+L  
Sbjct: 464 FREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKMLSD 523

Query: 407 NSFFRQV 413
           +   + V
Sbjct: 524 DGLDQSV 530



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 117/262 (44%), Gaps = 19/262 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ VFD M+        V S+N L     K +  D  + LF+ +    L P+  TY+ 
Sbjct: 283 DEAVKVFDMMVR-NGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYST 341

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C +GR+     +   ++     P+ VT++ L+  LC   R+ EA AL   +    
Sbjct: 342 LIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSN 401

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV  YN  I+G+CR G    A +LF  +A          +PD  T++ +I GLCK  
Sbjct: 402 LDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRG------LQPDVWTHNIMIRGLCKRG 455

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                     +   S L +       +R  C    +  +  GL + +K   A +L + + 
Sbjct: 456 ---------LLDEASKLFREMDENGCLRNGC---TYNTITQGLLQNNKTSRAIQLLEEML 503

Query: 311 RAGLMPNVVTYNILIRGLCNDG 332
             G   +V T  +L++ L +DG
Sbjct: 504 ARGFSADVSTTALLVKMLSDDG 525



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%)

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           + KHY TV  L K+++S G+ PD+YT  I+IN FC + RV     +  +IL     PD  
Sbjct: 68  KMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTA 127

Query: 396 TFTSLIKIL 404
           TFT+L++ L
Sbjct: 128 TFTTLVRGL 136



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +I+  C ++++  A  +   + + G  P+  T+  L+RGLC  G++ E         +F 
Sbjct: 97  VINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEA------LDVFD 150

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++   G  P++ TY  L+N  CK  +++    +F  ++    +PD  T+ SLI  L
Sbjct: 151 KMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHAL 206


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  184 bits (468), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 182/358 (50%), Gaps = 36/358 (10%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           +I+ ++AL  F  M  M P RP +  F    G +AK K Y TV+ L  +++L G+    Y
Sbjct: 71  TISVDDALASFYRMARMNP-RPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVY 129

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           + NILINC C++  V     V G++ +    PD +TFT+LI  +C E +I  A  L+ ++
Sbjct: 130 SLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEM 189

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G E DV +YNTLINGLC +G+T +A+++F++M   NG     C+P+ +TY+TIID L
Sbjct: 190 VRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQ-NG-----CKPNVVTYNTIIDSL 243

Query: 247 CKEA---GSANFL--------------------GFSCMASFSALNKMAFYFPLVRVQCLC 283
           CK+     + +FL                    G  C+   +   ++         +   
Sbjct: 244 CKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDV 303

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           + +  +ID L K   +  A +    +   G+ P+VVTY  ++ GLC  GQ++E       
Sbjct: 304 VTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEA------ 357

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             LFK++   G  PD+  YN +I+  CK   V+        ++     P+AVT+++++
Sbjct: 358 IRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTIL 415



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 160/337 (47%), Gaps = 31/337 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A+     M+  R   P   ++N +   L      +    LFKR+   G  PD  TYNI
Sbjct: 250 NDAMDFLSEMVG-RGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNI 308

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+   K   V+     L  ++     PD VT+T+++  LC   ++ EA  LF K+   G
Sbjct: 309 IIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKG 368

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+ DV  YNT+I+ LC+      A+    EM +          P+A+TYSTI+ G C   
Sbjct: 369 CKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRG------IPPNAVTYSTILHGFC--- 419

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLV---RVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
                       +   L++    F  +    V    L F  L+DGLC+   +  AR +F+
Sbjct: 420 ------------NLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFE 467

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           ++   G+ PN+ TYN L+ G C   +M+E +       +F+ +   G  PDL++YNILIN
Sbjct: 468 TMTEKGVEPNIYTYNALMNGYCLRCKMNEARK------VFEIMVGKGCAPDLHSYNILIN 521

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +C   R+     +  ++     TP+ VT+ +++K L
Sbjct: 522 GYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGL 558



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 182/414 (43%), Gaps = 50/414 (12%)

Query: 9   GRMRFADRLSRKPTSSISEN--EPSYPTTTATLRLTVKDR--ASLEQFLKERCKSSGEGD 64
           G++  A RL ++    + +N  +P   T    +    KDR       FL E        D
Sbjct: 282 GQLNEATRLFKR----MEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPD 337

Query: 65  ITSITP-----------NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           + + T            NEA+ +F  M   +  +P V ++N +   L K +  +  +   
Sbjct: 338 VVTYTTILHGLCYLGQLNEAIRLFKKM-EQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFL 396

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
             +   G+ P+  TY+ +++ FC +G++     +   ++     P+ +TF+ L+  LC E
Sbjct: 397 SEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQE 456

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
             + EA  +F  +   G E +++TYN L+NG C       A  +FE M       G  C 
Sbjct: 457 GMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMV------GKGCA 510

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLI 290
           PD  +Y+ +I+G C                   ++K       + V+ L  N   +  ++
Sbjct: 511 PDLHSYNILINGYCNS---------------RRMDKAKALLTQMSVKKLTPNTVTYNTIM 555

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
            GLC + +L  A+ELF+ +  +G++P ++TY+IL+ GLC  G +DE         LFK +
Sbjct: 556 KGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEA------LKLFKSM 609

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               L PD+  Y ILI      G++     +F ++      P   T+  +IK L
Sbjct: 610 KEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGL 663



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 132/270 (48%), Gaps = 25/270 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F  M+  R   P   +F+IL   L +         +F+ +   G+ P+ YTYN 
Sbjct: 425 DEATQLFKEMVG-RNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNA 483

Query: 131 LINCF---CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           L+N +   CKM      F ++  + + C  PD  ++  LI   C   R+ +A AL T++ 
Sbjct: 484 LMNGYCLRCKMNEARKVFEIM--VGKGC-APDLHSYNILINGYCNSRRMDKAKALLTQMS 540

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
           V     +  TYNT++ GLC  G  + A  LF++M +     G++  P  +TYS +++GLC
Sbjct: 541 VKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSS----GML--PTLMTYSILLNGLC 594

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K       L       F ++ +        +++   + +  LI+G+    KL++A+ LF 
Sbjct: 595 KHGHLDEALKL-----FKSMKEK-------KLEPDIILYTILIEGMFIGGKLEVAKGLFS 642

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            L   G+ P   TYN++I+GL  +G  DE 
Sbjct: 643 KLSADGIQPPGRTYNVMIKGLLKEGLSDEA 672



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 65/140 (46%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++++   P   ++N +   L           LFK++  +G+ P   TY+IL+N  CK G 
Sbjct: 539 MSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGH 598

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     +   +      PD + +T LI+ +    ++  A  LF+KL   G +    TYN 
Sbjct: 599 LDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNV 658

Query: 201 LINGLCRTGHTIVALNLFEE 220
           +I GL + G +  A  LF +
Sbjct: 659 MIKGLLKEGLSDEAYELFRK 678



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 44/102 (43%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +++IL   L K  H D  L LFK +    L PD   Y ILI      G++     +
Sbjct: 581 PTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGL 640

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
             ++      P   T+  +IK L  E    EA  LF K ++ 
Sbjct: 641 FSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMM 682


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/356 (34%), Positives = 170/356 (47%), Gaps = 44/356 (12%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+  F+ ML MRP  PP   F+ +   L K KHY TV+SLFK+    G+ P+  T NILI
Sbjct: 77  AVASFNRMLLMRPP-PPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILI 135

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           NCFC +  ++  F V   IL+  + PDA+T  +LIK LC    I  A     K+   G +
Sbjct: 136 NCFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQ 195

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEA 250
           LD  +Y TLINGLC+ G T     L  ++       G   +PD + Y+TII  LC  K  
Sbjct: 196 LDQVSYGTLINGLCKAGETKAVARLLRKLE------GHSVKPDVVMYTTIIHCLCKNKRV 249

Query: 251 GSANFL---------------------GFSCMA----SFSALNKMAFYFPLVRVQCLCLN 285
           G A  L                     GF  M     +FS LN+M     L  +      
Sbjct: 250 GDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMK----LKNINPDVYT 305

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  LID L K  K+  A  LF+ +    + PN+VTY  LI GLC +       H E    
Sbjct: 306 FNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKN------HHLERAIA 359

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L K++   G+ PD+Y+Y IL++  CK GR+ +    F  +L   +  +  T+  +I
Sbjct: 360 LCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMI 415



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 124/276 (44%), Gaps = 24/276 (8%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            S+  L   L K      V  L ++L    + PD   Y  +I+C CK  RV     +   
Sbjct: 199 VSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSE 258

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           ++    +P+  T+ +LI   C    + EA +L  ++++     DV+T+N LI+ L + G 
Sbjct: 259 MIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGK 318

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A++LFEEM + N        P+ +TY+++IDGLCK       +          +   
Sbjct: 319 IDEAISLFEEMKHKN------MFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPD 372

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
            + + +            L+D LCK  +L+ A++ FQ L   G   NV TYN++I GLC 
Sbjct: 373 VYSYTI------------LLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCK 420

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            G   +      V  L  ++   G  PD  T+  +I
Sbjct: 421 AGLFGD------VMDLKSKMEGKGCMPDAITFKTII 450



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 118/254 (46%), Gaps = 18/254 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +  +  CL K K       L+  + + G+ P+ +TYN LI  FC MG +   F 
Sbjct: 230 KPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFS 289

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +      PD  TF  LI  L  E +I EA +LF +++      ++ TY +LI+GLC
Sbjct: 290 LLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLC 349

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +  H   A+ L ++M     E G+  +PD  +Y+ ++D LCK     N   F     F  
Sbjct: 350 KNHHLERAIALCKKMK----EQGI--QPDVYSYTILLDALCKGGRLENAKQF-----FQH 398

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L    ++   VR       +  +I+GLCK        +L   +   G MP+ +T+  +I 
Sbjct: 399 LLVKGYHLN-VRT------YNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIIC 451

Query: 327 GLCNDGQMDETKHY 340
            L    + D+ + +
Sbjct: 452 ALFEKDENDKAEKF 465



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 85/172 (49%), Gaps = 7/172 (4%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + + M  ++   P V +FNIL   L K    D  +SLF+ +    +FP+  TY  L
Sbjct: 286 EAFSLLNEM-KLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSL 344

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK   +     +  ++      PD  ++T L+  LC   R+  A   F  L V G 
Sbjct: 345 IDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGY 404

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            L+V TYN +INGLC+ G     ++L  +M  G G     C PDAIT+ TII
Sbjct: 405 HLNVRTYNVMINGLCKAGLFGDVMDLKSKM-EGKG-----CMPDAITFKTII 450



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 106/247 (42%), Gaps = 24/247 (9%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P    F +++  L      +   +LF + +  G   ++ T N LIN  C   H   A ++
Sbjct: 91  PPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSV 150

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
           F  +            PDAIT +T+I GLC       F G    A +     +A  F L 
Sbjct: 151 FANILKRG------YHPDAITLNTLIKGLC-------FCGEIKRALYFHDKVVAQGFQLD 197

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           +V     ++  LI+GLCK  + K    L + L    + P+VV Y  +I  LC + ++ + 
Sbjct: 198 QV-----SYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDA 252

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   L+  +   G+ P+++TYN LI  FC +G +   F +   +      PD  TF
Sbjct: 253 CD------LYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTF 306

Query: 398 TSLIKIL 404
             LI  L
Sbjct: 307 NILIDAL 313


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 179/355 (50%), Gaps = 34/355 (9%)

Query: 51  QFL---KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYD 107
           QFL   +  CKS   G + +I  +EAL +F  M +M+P  P V  F +L G + + KHY 
Sbjct: 40  QFLISMRNLCKS---GKVKNI--DEALDLFQGMASMKP-LPSVKDFTLLLGVIVRLKHYT 93

Query: 108 TVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           T +SL K + +  G+  D  T NI+INC C++  V+ GF VLG + +    P  +T T+L
Sbjct: 94  TAISLVKHIFSSLGIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTAL 153

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           I  LC +  + +A  L   +      LDV+TY  LINGLC+TG T+ A+    +M   N 
Sbjct: 154 INGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERN- 212

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
                 +P+ + YSTI+DGLCK+   +  L      S               V+   + +
Sbjct: 213 -----WKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKG------------VRPNLVTY 255

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
            CLI GLC   + K    L   + + G+  ++ T NIL+   C +G++ + K      +L
Sbjct: 256 ACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMIL 315

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                 TG  PD++TYN LI+ +C   +++    +F  ++     PD V FTSLI
Sbjct: 316 ------TGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLI 364



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 147/337 (43%), Gaps = 25/337 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           E   + D M+ M   R  + + NIL     K        S+   + LTG  PD +TYN L
Sbjct: 270 ETGSLLDEMIKM-GMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSL 328

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ +C   +++    V   ++     PD V FTSLI   C +  I +   L  ++   G 
Sbjct: 329 IHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGF 388

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV T+ TLI G C+ G  + A  LF  M     ++G V  P+  T + I+DGLCK   
Sbjct: 389 VPDVVTWTTLIGGFCQAGRPLAAKELFLNMH----KYGQV--PNLQTCAVILDGLCK--- 439

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             N L    ++   A+ K      +V        +  L+DG+C   KL  A ELF SLP 
Sbjct: 440 -GNLLS-EAVSLAEAMEKSNLDLNIVI-------YSILLDGMCSAGKLNAAWELFSSLPG 490

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL  NV TY I+I+GLC  G +D+ +       L   +   G  PD  TYN+ +     
Sbjct: 491 KGLQINVYTYTIMIKGLCKQGSLDKAED------LLINMEENGCLPDNCTYNVFVQGLLT 544

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
              ++        +    F+ DA T    I  L  N 
Sbjct: 545 KKEIARSIKYLTIMRDKGFSVDAATTEITINYLSTNE 581



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 100/249 (40%), Gaps = 26/249 (10%)

Query: 159 DAVTFTSLIKDLCAESRIM---EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           +   F   +++LC   ++    EA  LF  +        V  +  L+  + R  H   A+
Sbjct: 37  NGTQFLISMRNLCKSGKVKNIDEALDLFQGMASMKPLPSVKDFTLLLGVIVRLKHYTTAI 96

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
           +L + + +  G      E D IT + +I+ LC+    A   GFS + +   L        
Sbjct: 97  SLVKHIFSSLG-----IEADTITLNIVINCLCRLKLVA--FGFSVLGTMFKLG------- 142

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
              ++   +    LI+GLC    +  A  L   + +     +V TY +LI GLC  G   
Sbjct: 143 ---LEPTVMTLTALINGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTL 199

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
               +       +++      P++  Y+ +++  CK G VS    +   +      P+ V
Sbjct: 200 AAVEW------LRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLV 253

Query: 396 TFTSLIKIL 404
           T+  LI+ L
Sbjct: 254 TYACLIQGL 262


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 111/350 (31%), Positives = 178/350 (50%), Gaps = 36/350 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F+ +L   P+ PP   FN + G L K+KHY TVL L K++   G+ P+    NI
Sbjct: 69  DDAVSLFNCLLRQNPT-PPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNI 127

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC++G +   F V  +IL+  + P+ +TFT+LIK LC + +I +A     KL   G
Sbjct: 128 LINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALG 187

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + +  +Y TLI+GLC+ G T  AL+L   +       G + +P+ + YSTIIDG+CK+ 
Sbjct: 188 FQFNQISYGTLIDGLCKVGETRAALDLLRRVD------GKLVQPNVVMYSTIIDGMCKDK 241

Query: 251 G----------------SANFLGFSCMAS-FSALNKMAFYFPLV------RVQCLCLNFL 287
                            S N + +S + S F  + K+     L        ++     F 
Sbjct: 242 HVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFN 301

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L+D  CK  K+  A +L   +   G  PN+VTY+ ++  LC   ++D+         L 
Sbjct: 302 ILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKA------VALL 355

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
            +L   G+ P+++TY ILI+  C  G++     IF  +L   +    VT+
Sbjct: 356 TKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTY 405



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 127/277 (45%), Gaps = 30/277 (10%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S+  L   L K       L L +R++   + P+   Y+ +I+  CK   V+  F +   +
Sbjct: 194 SYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEM 253

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +    +P+ VT+++LI       ++ +A  LF K+     + DV+T+N L++  C++G  
Sbjct: 254 VSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKI 313

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             AL L +EM +  G+      P+ +TYS+I+D LCK                  ++K  
Sbjct: 314 SYALKLVDEMHD-RGQ-----PPNIVTYSSILDALCKT---------------HRVDKAV 352

Query: 272 FYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
                ++ Q +  N   +  LIDGLC   KL+ AR +F+ L   G    VVTY ++  G 
Sbjct: 353 ALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGF 412

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           C  G  DE         L  ++   G  PD  TY ++
Sbjct: 413 CKKGLFDEAS------ALLSKMEENGCIPDAKTYELI 443



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 24/253 (9%)

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +LR   TP A+ F  ++  L           L  K+   G + ++   N LIN  C+ G 
Sbjct: 78  LLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNILINCFCQLGL 137

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A ++F ++        +   P+ IT++T+I GLC +      L F        L  +
Sbjct: 138 IPFAFSVFAKI------LKMGYNPNTITFTTLIKGLCLKGQIHQALNFH-----DKLVAL 186

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
            F F  +       ++  LIDGLCK+ + + A +L + +    + PNVV Y+ +I G+C 
Sbjct: 187 GFQFNQI-------SYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCK 239

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
           D      KH    F L+  + S G+ P++ TY+ LI+ F  +G++     +F +++    
Sbjct: 240 D------KHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENI 293

Query: 391 TPDAVTFTSLIKI 403
            PD  TF  L+ +
Sbjct: 294 KPDVYTFNILVDV 306



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 7/179 (3%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ +F+ M++    +P V +FNIL     K+      L L   ++  G  P+  TY+ +
Sbjct: 280 DAVDLFNKMIS-ENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSI 338

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK  RV     +L ++      P+  T+T LI  LC   ++ +A  +F  L V G 
Sbjct: 339 LDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGY 398

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           ++ V TY  +  G C+ G    A  L  +M   NG     C PDA TY  I   L K+ 
Sbjct: 399 DITVVTYIVMFYGFCKKGLFDEASALLSKMEE-NG-----CIPDAKTYELIKLSLFKKG 451



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 6/101 (5%)

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  LF  L R    P  + +N ++      G + ++KHY TV  L K++   G+ P+L  
Sbjct: 71  AVSLFNCLLRQNPTPPAIEFNKIL------GSLVKSKHYHTVLYLSKKMEFRGIKPNLVN 124

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            NILINCFC++G +   F +F +IL   + P+ +TFT+LIK
Sbjct: 125 CNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIK 165



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 1/148 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL + D M + R   P + +++ +   L KT   D  ++L  +L   G+ P+ +TY ILI
Sbjct: 316 ALKLVDEMHD-RGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILI 374

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  C  G++     +   +L   +    VT+  +    C +    EA+AL +K+   GC 
Sbjct: 375 DGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEENGCI 434

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEE 220
            D  TY  +   L + G   +A  L  E
Sbjct: 435 PDAKTYELIKLSLFKKGENDMAEKLHRE 462


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 111/343 (32%), Positives = 173/343 (50%), Gaps = 47/343 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           PP+  FN + G LAK K Y T +SL K++ + G+  +  T NILINCFC +G+++  F V
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSV 67

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG+IL+  + PD +T  +L+K LC +  + ++     K+   G ++D  +Y TL+NGLC+
Sbjct: 68  LGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCK 127

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE------------------ 249
            G T  A+ L   + + +        P+ + Y+TIIDGLCK+                  
Sbjct: 128 IGETRCAVKLLRMIEDRS------TRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGI 181

Query: 250 -----AGSANFLGF----SCMASFSALNKMAF--YFPLVRVQCLCLNFLCLIDGLCKISK 298
                  +    GF      M +FS L++M      P V +      +  LI+ LCK   
Sbjct: 182 FPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYI------YNILINALCKEGN 235

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           +K A+ L   + + G+ P VVTY+ L+ G C  G++   K       +F  +   G+ P+
Sbjct: 236 VKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQ------IFHAMVQMGVNPN 289

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +Y+YNI+IN  CK  RV     +   +L     PD VT+ SLI
Sbjct: 290 VYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLI 332



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 155/360 (43%), Gaps = 59/360 (16%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR-------------- 125
           M+  R +RP V  +N +   L K K  +    L+  ++  G+FPD               
Sbjct: 140 MIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLG 199

Query: 126 ---------------------YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
                                Y YNILIN  CK G V     +L  + +    P  VT++
Sbjct: 200 QLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYS 259

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           +L+   C    +  A  +F  +   G   +V++YN +INGLC+      A+NL  EM + 
Sbjct: 260 TLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHK 319

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL 284
           N        PD +TY+++IDGLCK             ++ + +N+M        V    +
Sbjct: 320 N------MVPDTVTYNSLIDGLCKSG--------RITSALNLMNEMHHRGQPADV----V 361

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  L+D LCK   L  A  LF  +   G+ P + TY  LI GLC  G++   +      
Sbjct: 362 TYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQE----- 416

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            LF+ L   G   D++TY ++I+  CK G       I  ++  +   P+AVTF  +I+ L
Sbjct: 417 -LFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSL 475



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 142/318 (44%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   + N L   L         L    ++   G   D  +Y  L+N  CK+G       
Sbjct: 77  QPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCAVK 136

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  I      P+ V + ++I  LC +  + EA  L++++   G   D  TY TLI G C
Sbjct: 137 LLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFC 196

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G  + A +L +EM   N        P    Y+ +I+ LCKE           + +   
Sbjct: 197 LLGQLMGAFSLLDEMILKN------INPGVYIYNILINALCKEGNVKEAKNLLAVMTKEG 250

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +       P V      + +  L+DG C + +++ A+++F ++ + G+ PNV +YNI+I 
Sbjct: 251 IK------PGV------VTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMIN 298

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC   ++DE  +      L + +    + PD  TYN LI+  CK GR++S   +   + 
Sbjct: 299 GLCKCKRVDEAMN------LLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMH 352

Query: 387 PSCFTPDAVTFTSLIKIL 404
                 D VT+TSL+  L
Sbjct: 353 HRGQPADVVTYTSLLDAL 370



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 90/175 (51%), Gaps = 7/175 (4%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F  M+ M  + P V S+NI+   L K K  D  ++L + +    + PD  TYN LI+  
Sbjct: 277 IFHAMVQMGVN-PNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGL 335

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK GR++    ++  +       D VT+TSL+  LC    + +A ALF K++  G +  +
Sbjct: 336 CKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTM 395

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           +TY  LI+GLC+ G    A  LF+ +          C  D  TY+ +I GLCKE 
Sbjct: 396 YTYTALIDGLCKGGRLKNAQELFQHLLVKG------CCIDVWTYTVMISGLCKEG 444



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 78/179 (43%), Gaps = 9/179 (5%)

Query: 43  VKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAK 102
           V D  +    +   CKS   G ITS     AL + + M + R     V ++  L   L K
Sbjct: 322 VPDTVTYNSLIDGLCKS---GRITS-----ALNLMNEM-HHRGQPADVVTYTSLLDALCK 372

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
            ++ D   +LF ++   G+ P  YTY  LI+  CK GR+ +   +   +L      D  T
Sbjct: 373 NQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWT 432

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           +T +I  LC E    EA A+ +K+   GC  +  T+  +I  L        A  L  EM
Sbjct: 433 YTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEM 491



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 6/87 (6%)

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P ++ +N ++      G + + K Y T   L K++   G+  +  T NILINCFC +G++
Sbjct: 8   PPIIEFNKIL------GSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQM 61

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  F + G+IL   + PD +T  +L+K
Sbjct: 62  AFSFSVLGKILKLGYQPDTITLNTLMK 88



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
           LVR     + F  ++  L K+ +   A  L + +   G+  N VT NILI   C+ GQM 
Sbjct: 3   LVRHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMA 62

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
            +      F +  ++   G  PD  T N L+   C  G V        +++   F  D V
Sbjct: 63  FS------FSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHV 116

Query: 396 TFTSLI 401
           ++ +L+
Sbjct: 117 SYGTLL 122


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/348 (30%), Positives = 179/348 (51%), Gaps = 35/348 (10%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           F+ +L+ +  +P +  F  + G L K+ HY TV+SL +++   G+  D    +ILINCF 
Sbjct: 59  FNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFS 118

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           ++G+    F VL +IL+  + P+ +T T+LIK LC + +I +A     K+   G  L+  
Sbjct: 119 QLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKV 178

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-EAGSANF 255
           +Y TLINGLC+ G T  AL L   +       G + +P+ + Y+TIID +CK +  +  F
Sbjct: 179 SYGTLINGLCKVGQTSAALQLLRRVD------GKLVQPNVVMYNTIIDSMCKVKLVNEAF 232

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCL----------------------CLNFLCLIDGL 293
             +S M S      +  Y  L+   C+                         F  L+DG 
Sbjct: 233 DLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGF 292

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK  +LK A+ +   + + G+ P+V TYN L+   C   ++++ KH      +F  ++  
Sbjct: 293 CKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKH------IFNTISQR 346

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G+ P++++Y+I+I+ FCKI +V     +F  +  +   PD VT+ SLI
Sbjct: 347 GVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLI 394



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 155/337 (45%), Gaps = 37/337 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  ++  M++   S P V ++N L               LF ++    + P+ YT+NI
Sbjct: 229 NEAFDLYSEMVSKGIS-PDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNI 287

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ FCK  R+     VL  +++    PD  T+ SL+   C    + +A  +F  +   G
Sbjct: 288 LVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRG 347

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              ++ +Y+ +I+G C+      A+NLF+EM   N        PD +TY+++IDGLCK  
Sbjct: 348 VNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNN------IIPDVVTYNSLIDGLCK-- 399

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARE 304
                           L K+++   LV       V    + +  ++D LCK  ++  A  
Sbjct: 400 ----------------LGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIA 443

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L   +   G+ P++ TY  L+ GLC +G++++ +      ++F+ L   G   D+  Y  
Sbjct: 444 LLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDAR------IVFEDLLVKGYILDVNIYTA 497

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +I  FC  G       +  ++  +   P+AVT+  +I
Sbjct: 498 MIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIII 534



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 147/317 (46%), Gaps = 26/317 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N +   + K K  +    L+  +   G+ PD  TYN LI+ FC +G++     
Sbjct: 209 QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATD 268

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  +++     P+  TF  L+   C E R+ EA  +   +   G + DVFTYN+L++  C
Sbjct: 269 LFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYC 328

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFS 265
                  A ++F  ++    + GV   P+  +YS +I G CK       +  F  M   +
Sbjct: 329 LVKEVNKAKHIFNTIS----QRGV--NPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNN 382

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            +  +  Y  L             IDGLCK+ K+  A +L   +   G+  + +TYN ++
Sbjct: 383 IIPDVVTYNSL-------------IDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSIL 429

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
             LC + Q+D+         L  ++   G+ PD+ TY  L++  CK GR+    ++F  +
Sbjct: 430 DALCKNHQVDKA------IALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDL 483

Query: 386 LPSCFTPDAVTFTSLIK 402
           L   +  D   +T++I+
Sbjct: 484 LVKGYILDVNIYTAMIQ 500



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 26/278 (9%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  +  +P V ++N L       K  +    +F  ++  G+ P+ ++Y+I+I+ FCK+ 
Sbjct: 307 MMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIK 366

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           +V     +   +  +   PD VT+ SLI  LC   +I  A  L  ++   G   D  TYN
Sbjct: 367 KVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYN 426

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           ++++ LC+      A+ L  +M +         +PD  TY+T++DGLCK     +     
Sbjct: 427 SILDALCKNHQVDKAIALLTKMKDEG------IQPDICTYTTLVDGLCKNGRLEDA---- 476

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLN-FLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                    ++ F   LV+   L +N +  +I G C       + +L   +   G +PN 
Sbjct: 477 ---------RIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNA 527

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
           VTY I+I  L +  + D+ +       L + + + GLF
Sbjct: 528 VTYEIIICSLFDKDENDKAEK------LLREMITRGLF 559



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 42/71 (59%)

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G + ++ HY TV  L +++   G+  DL   +ILINCF ++G+    F +  +IL   + 
Sbjct: 80  GSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFSVLAKILKMGYE 139

Query: 392 PDAVTFTSLIK 402
           P+ +T T+LIK
Sbjct: 140 PNVITLTTLIK 150


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/337 (32%), Positives = 174/337 (51%), Gaps = 25/337 (7%)

Query: 66  TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
           +S+   E + +F  M+  RP  P +  F+ +   +AK+K+YD V+SLF  + + G+  D 
Sbjct: 46  SSMNLEEEIDLFCKMIQSRP-LPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDL 104

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           Y+YNI+INC C+  R      V+G++++  + PD VT +SLI   C  +R+ +A  L +K
Sbjct: 105 YSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSK 164

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +   G   DV  YNT+I+G C+ G    A+ LF+ M       GV    DA+TY++++ G
Sbjct: 165 MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERD----GV--RADAVTYNSLVAG 218

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           LC            C   +S   ++     +  +    + F  +ID   K  K   A +L
Sbjct: 219 LC------------CSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKL 266

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           ++ + R  + P+V TYN LI GLC  G++DE K       +   + + G  PD+ TYN L
Sbjct: 267 YEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQ------MLDLMVTKGCLPDVVTYNTL 320

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           IN FCK  RV  G  +F  +       D +T+ ++I+
Sbjct: 321 INGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQ 357



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 155/322 (48%), Gaps = 28/322 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A+ +FD M      R    ++N L   L  +  +     L + + +  + P+  T+  
Sbjct: 191 NDAVELFDRM-ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTA 249

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+ F K G+ S    +   + R C  PD  T+ SLI  LC   R+ EA  +   +   G
Sbjct: 250 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 309

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  DV TYNTLING C++        LF EMA    + G+V   D ITY+TII G   +A
Sbjct: 310 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMA----QRGLV--GDTITYNTIIQGYF-QA 362

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G  +    +    FS ++      P +R       +  L+ GLC   +++ A  LF+++ 
Sbjct: 363 GRPD----AAQEIFSRMDSR----PNIR------TYSILLYGLCMNWRVEKALVLFENMQ 408

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           ++ +  ++ TYNI+I G+C  G +      E  + LF+ L+  GL PD+ +Y  +I+ FC
Sbjct: 409 KSEIELDITTYNIVIHGMCKIGNV------EDAWDLFRSLSCKGLKPDVVSYTTMISGFC 462

Query: 371 KIGRVSSGFVIFGRILPSCFTP 392
           +  +     +++ ++      P
Sbjct: 463 RKRQWDKSDLLYRKMQEDGLLP 484



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 109/272 (40%), Gaps = 72/272 (26%)

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ FCKM             ++S   P  V F+ ++  +          +LF  + V G 
Sbjct: 54  IDLFCKM-------------IQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGI 100

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+++YN +IN LCR    ++AL++  +M     +FG   EPD +T S+          
Sbjct: 101 GHDLYSYNIVINCLCRCSRFVIALSVVGKMM----KFGY--EPDVVTVSS---------- 144

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                LI+G C+ +++  A +L   +  
Sbjct: 145 -------------------------------------LINGFCQGNRVFDAIDLVSKMEE 167

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G  P+VV YN +I G C  G +++         LF R+   G+  D  TYN L+   C 
Sbjct: 168 MGFRPDVVIYNTIIDGSCKIGLVNDAVE------LFDRMERDGVRADAVTYNSLVAGLCC 221

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
            GR S    +   ++     P+ +TFT++I +
Sbjct: 222 SGRWSDAARLMRDMVMRDIVPNVITFTAVIDV 253


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 172/331 (51%), Gaps = 24/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F  ML  RP  P V  F  L G + + +  D V+SL++++    +  D Y++NI
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI CFC   ++       G+I +    PD VTFT+L+  LC E R+ EA  LF ++    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V T+ TL+NGLCR G  + A+ L + M     E G+  +P  ITY TI+DG+CK+ 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMM----EDGL--QPTQITYGTIVDGMCKKG 233

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            + + L          + +++   P V +      +  +ID LCK  +   A+ LF  + 
Sbjct: 234 DTVSALNL-----LRKMEEVSHIIPNVVI------YSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P++ TYN +I G C+ G+  + +       L + +    + PD+ TYN LIN F 
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQ------LLQEMLERKISPDVVTYNALINAFV 336

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G+      ++  +LP    P+ +T++S+I
Sbjct: 337 KEGKFFEAEELYDEMLPRGIIPNTITYSSMI 367



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 152/321 (47%), Gaps = 19/321 (5%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS- 142
           R   P V ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+  
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 143 --HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
             H F ++    + C +P+ +TF +LI   C   RI +   L  ++   G   D  TYNT
Sbjct: 379 AEHMFYLMAT--KGC-SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+G    G    AL+L +EM +       +C PD +T  T++DGLC      + L    
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFK 489

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           +   S  +  A + P   V+     +  LI GL    K   A EL++ +P  G++P+ +T
Sbjct: 490 VMQKSKKDLDASH-PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+ +I GLC   ++DE         +F  + S    P++ T+  LIN +CK GRV  G  
Sbjct: 549 YSSMIDGLCKQSRLDEATQ------MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLE 602

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +F  +       +A+T+ +LI
Sbjct: 603 LFCEMGRRGIVANAITYITLI 623



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 158/363 (43%), Gaps = 76/363 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  ++ +   L K   +    +LF  +   G+FPD +TYN +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 148 LGRILRSCFTPDAVTF-----------------------------------TSLIKDLCA 172
           L  +L    +PD VT+                                   +S+I   C 
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           ++R+  A  +F  +   GC  ++ T+NTLI+G C        + L  EM     E G+V 
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT----ETGLVA 428

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL---CL 289
             D  TY+T+I G         +L     A+   L +M           LC + +    L
Sbjct: 429 --DTTTYNTLIHGF--------YLVGDLNAALDLLQEMI-------SSGLCPDIVTCDTL 471

Query: 290 IDGLCKISKLKIARELFQ-----------SLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           +DGLC   KLK A E+F+           S P  G+ P+V TYNILI GL N+G+  E +
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  L++ +   G+ PD  TY+ +I+  CK  R+     +F  +    F+P+ VTFT
Sbjct: 532 E------LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFT 585

Query: 399 SLI 401
           +LI
Sbjct: 586 TLI 588



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 143/334 (42%), Gaps = 70/334 (20%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           Y++  +   P + +FN L       K  D  + L   +  TGL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF--------- 189
           G ++    +L  ++ S   PD VT  +L+  LC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 190 --GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G E DV TYN LI+GL   G  + A  L+EEM +     G+V  PD ITYS++IDGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH----RGIV--PDTITYSSMIDGLC 557

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K+                                               S+L  A ++F 
Sbjct: 558 KQ-----------------------------------------------SRLDEATQMFD 570

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           S+      PNVVT+  LI G C  G++D+         LF  +   G+  +  TY  LI 
Sbjct: 571 SMGSKSFSPNVVTFTTLINGYCKAGRVDDG------LELFCEMGRRGIVANAITYITLIC 624

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            F K+G ++    IF  ++ S   PD +T  +++
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++NIL   L     +     L++ +   G+ PD  TY+ +I+  CK  R+     
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +    F+P+ VTFT+LI   C   R+ +   LF ++   G   +  TY TLI G  
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           + G+   AL++F+EM +     GV   PD IT   ++ GL
Sbjct: 628 KVGNINGALDIFQEMISS----GVY--PDTITIRNMLTGL 661



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD M   +   P V +F  L     K    D  L LF  +   G+  +  TY  
Sbjct: 563 DEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           LI  F K+G ++    +   ++ S   PD +T  +++  L ++  +  A A+  KL++
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 165/329 (50%), Gaps = 25/329 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL  +  M+ M+P  P V  FN+LFG +AK KHY T +SL K ++  G+ P+  T+NI+I
Sbjct: 10  ALDFYHKMVTMKPF-PCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTHNIVI 68

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           NC C++     GF VLG + +    P  VTFT+++  LC E  + +A      L+  G E
Sbjct: 69  NCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYE 128

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D +T   +INGLC+ GH+  AL+  ++M   N      C  D   YS ++DGLCK+   
Sbjct: 129 SDRYTRGAIINGLCKVGHSSAALSYLKKMEEQN------CNLDVTAYSAVVDGLCKDG-- 180

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
              + F  +  FS +           +Q     + CLI GLC   + K A  L  ++ R 
Sbjct: 181 ---MVFEALDLFSQMTGKG-------IQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRK 230

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+MP+V T+N++       G +   K       +F  +   G+  ++ TYN +I   C +
Sbjct: 231 GIMPDVQTFNVIAGRFLKTGMISRAKS------IFSFMGHMGIEHNVVTYNSIIGAHCML 284

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            ++     +F  ++     P+ VT+ SLI
Sbjct: 285 NQMKDAMEVFDLMIRKGCLPNIVTYNSLI 313



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 148/346 (42%), Gaps = 33/346 (9%)

Query: 72  EALCVFDYMLNMRP---------SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
             LC FD      P           P V +FN++ G   KT       S+F  +   G+ 
Sbjct: 209 HGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIE 268

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
            +  TYN +I   C + ++     V   ++R    P+ VT+ SLI   C    + +A   
Sbjct: 269 HNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYF 328

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             ++   G + DV T++TLI G C+ G  + A  LF  M + +G+      PD  T + I
Sbjct: 329 LGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVM-HKHGQL-----PDLQTCAII 382

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           +DGL K     +F     M+ F  L KM     ++        +  +++G+C   KL  A
Sbjct: 383 LDGLFK----CHFHS-EAMSLFRELEKMNSDLDIII-------YSIILNGMCSSGKLNDA 430

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            ELF  L   G+  +VVTYNI+I GLC +G +D+ +       L  ++   G  PD  TY
Sbjct: 431 LELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAED------LLMKMEENGCPPDECTY 484

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
           N+ +    +   +S        +    F  +A T   LI     N 
Sbjct: 485 NVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLLINYFSANK 530


>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 188/386 (48%), Gaps = 37/386 (9%)

Query: 17  LSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCV 76
           LS  PT  +    PS+ ++T +   ++    S  QFL +  ++    D+       AL  
Sbjct: 18  LSSNPTHFLLH--PSHSSSTFSTYASI--NTSRAQFL-DSLRNVKSVDV-------ALDF 65

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           +  M+ M+P  P V  FN+LFG +AK KHY T +SL K ++  G+ P+  T+NI+INC C
Sbjct: 66  YHKMVTMKPF-PCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVPTHNIVINCLC 124

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           ++     GF VLG + +    P  VTFT+++  LC E  + +A      L+  G E D +
Sbjct: 125 RLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRY 184

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           T   +INGLC+ GH+  AL+  ++M   N      C  D   Y+ ++DGLCK+      +
Sbjct: 185 TRGAIINGLCKVGHSSAALSYLKKMEEQN------CNLDVTAYNAVVDGLCKDG-----M 233

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
            F     FS +           +Q     + CLI GLC   + K A  L  ++ R G+MP
Sbjct: 234 VFEAWDLFSQMTGKG-------IQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMP 286

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           +V T+N++       G +   K       +F  +   G+  D+ TY+ +I   C + ++ 
Sbjct: 287 DVQTFNVIGGRFLKTGMISRAKS------IFSFMGHMGIEHDVVTYSSIIGVHCMLNQMK 340

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIK 402
               +F  ++     P+ VT+TSLI 
Sbjct: 341 DAMEVFDLMIRKGCLPNIVTYTSLIH 366



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 149/345 (43%), Gaps = 33/345 (9%)

Query: 72  EALCVFDYMLNMRP---------SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
             LC FD      P           P V +FN++ G   KT       S+F  +   G+ 
Sbjct: 261 HGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIE 320

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
            D  TY+ +I   C + ++     V   ++R    P+ VT+TSLI   C    + +A   
Sbjct: 321 HDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYF 380

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             ++   G + ++ T+NTLI G C+ G  + A  LF  M + +G+      PD  T + I
Sbjct: 381 LGEMVNNGLDPNIVTWNTLIGGFCKAGKPVAAKELFFVM-HKHGQL-----PDLQTCAII 434

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           +DGL K     +F     M+ F  L KM     ++        +  +++G+C   KL  A
Sbjct: 435 LDGLFK----CHFHS-EAMSLFRELEKMNSDLDIII-------YSIILNGMCSSGKLNDA 482

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            ELF  L   G+  +VVTYNI+I GLC +G +D+ +       L  ++   G  PD  TY
Sbjct: 483 LELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAED------LLMKMEENGCPPDECTY 536

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           N+ +    +   +S        +    F  +A T   LI     N
Sbjct: 537 NVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLLINYFSAN 581


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 113/358 (31%), Positives = 179/358 (50%), Gaps = 44/358 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++ +  F+ +L +R + PP+  F  + G L K KHY T +SL +++ + G+ P+  T NI
Sbjct: 47  DDTVSQFNRLLLVRHT-PPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNI 105

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC +G+++  F VLG+IL+  + PD +T  +L+K LC +  +  +     K+   G
Sbjct: 106 LINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQG 165

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE- 249
            +++  +Y TL+NGLC+ G T  A+ L   + + +        PD + YSTIIDGLCK+ 
Sbjct: 166 FQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRS------TRPDVVMYSTIIDGLCKDK 219

Query: 250 ----------------------AGSANFLGF----SCMASFSALNKMAFYFPLVRVQCLC 283
                                   S    GF      M +FS LN+M     L  +    
Sbjct: 220 IVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMI----LKNINPNV 275

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             +  LID LCK  K+K A++L   +   G   +VVTYN ++ GLC    +D+       
Sbjct: 276 YTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKAT----- 330

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             LF ++   G+ P+ YTY  LI+  CK GR+ +   +F  +L      D  T+  +I
Sbjct: 331 -ALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMI 387



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 20/260 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  R +RP V  ++ +   L K K  +     F  +N  G+FP+  TY+ LI  FC  G
Sbjct: 195 MIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAG 254

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++   F +L  ++     P+  T+  LI  LC E ++ EA  L  ++   G   DV TYN
Sbjct: 255 QLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYN 314

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           ++++GLC++ +   A  LF +M     ++G+  +P+  TY+ +IDGLCK     N     
Sbjct: 315 SVLDGLCKSQNLDKATALFMKMK----KWGI--QPNKYTYTALIDGLCKGGRLKN----- 363

Query: 260 CMASFSALNKMAFYFPLVRVQCLCL-NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                    +  F   LV+  C+ +  +  +I GLCK      A  +   +   G +PN 
Sbjct: 364 --------AQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNA 415

Query: 319 VTYNILIRGLCNDGQMDETK 338
           VT++I+IR L    + D+ +
Sbjct: 416 VTFDIIIRSLFEKDENDKAE 435



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 128/276 (46%), Gaps = 24/276 (8%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            S+  L   L K       + L + +      PD   Y+ +I+  CK   V+  +     
Sbjct: 171 VSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSE 230

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +      P+ +T+++LI   C   ++M A +L  ++ +     +V+TYN LI+ LC+ G 
Sbjct: 231 MNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGK 290

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A  L  EM +  G+       D +TY++++DGLCK   S N       A F  + K 
Sbjct: 291 VKEAKKLLAEMHH-KGQ-----PADVVTYNSVLDGLCK---SQNL--DKATALFMKMKKW 339

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                   +Q     +  LIDGLCK  +LK A++LFQ L   G   +V TYN++I GLC 
Sbjct: 340 G-------IQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCK 392

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           +G  D+         +  ++   G  P+  T++I+I
Sbjct: 393 EGMFDKA------LAMKSKMEDNGCIPNAVTFDIII 422



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 28/257 (10%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R+L    TP  + F  ++  L        A +L  ++ V G E ++ T N LIN  C  G
Sbjct: 55  RLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLG 114

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF--SCMASFSAL 267
               + ++  ++        +  +PD IT +T++ GLC +      L F    +A    +
Sbjct: 115 QMAFSFSVLGKI------LKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQM 168

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N++++                L++GLCKI + + A +L + +      P+VV Y+ +I G
Sbjct: 169 NQVSYG--------------TLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDG 214

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC D  +++   +      F  +N+ G+FP++ TY+ LI  FC  G++   F +   ++ 
Sbjct: 215 LCKDKIVNQAYDF------FSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMIL 268

Query: 388 SCFTPDAVTFTSLIKIL 404
               P+  T+  LI  L
Sbjct: 269 KNINPNVYTYNILIDAL 285


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 171/331 (51%), Gaps = 24/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F  ML  RP  P V  F  L G + + +  D V+SL++++    +  D Y++NI
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI CFC   ++       G+I +    PD VTFT+L+  LC E R+ EA   F ++    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V T+ TL+NGLCR G  + A+ L + M     E G+  +P  ITY TI+DG+CK+ 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMM----EDGL--QPTQITYGTIVDGMCKKG 233

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            + + L          + +++   P V +      +  +ID LCK  +   A+ LF  + 
Sbjct: 234 DTVSALNL-----LRKMEEVSHIIPNVVI------YSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P++ TYN +I G C+ G+  + +       L + +    + PD+ TYN LIN F 
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQ------LLQEMLERKISPDVVTYNALINAFV 336

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G+      ++  +LP    P+ +T++S+I
Sbjct: 337 KEGKFFEAEELYDEMLPRGIIPNTITYSSMI 367



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 152/321 (47%), Gaps = 19/321 (5%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS- 142
           R   P V ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+  
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 143 --HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
             H F ++    + C +P+ +TF +LI   C   RI +   L  ++   G   D  TYNT
Sbjct: 379 AEHMFYLMAT--KGC-SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+G    G    AL+L +EM +       +C PD +T  T++DGLC      + L    
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFK 489

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           +   S  +  A + P   V+     +  LI GL    K   A EL++ +P  G++P+ +T
Sbjct: 490 VMQKSKKDLDASH-PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+ +I GLC   ++DE         +F  + S    P++ T+  LIN +CK GRV  G  
Sbjct: 549 YSSMIDGLCKQSRLDEATQ------MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLE 602

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +F  +       +A+T+ +LI
Sbjct: 603 LFCEMGRRGIVANAITYITLI 623



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 158/363 (43%), Gaps = 76/363 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  ++ +   L K   +    +LF  +   G+FPD +TYN +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 148 LGRILRSCFTPDAVTF-----------------------------------TSLIKDLCA 172
           L  +L    +PD VT+                                   +S+I   C 
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           ++R+  A  +F  +   GC  ++ T+NTLI+G C        + L  EM     E G+V 
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT----ETGLVA 428

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL---CL 289
             D  TY+T+I G         +L     A+   L +M           LC + +    L
Sbjct: 429 --DTTTYNTLIHGF--------YLVGDLNAALDLLQEMI-------SSGLCPDIVTCDTL 471

Query: 290 IDGLCKISKLKIARELFQ-----------SLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           +DGLC   KLK A E+F+           S P  G+ P+V TYNILI GL N+G+  E +
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  L++ +   G+ PD  TY+ +I+  CK  R+     +F  +    F+P+ VTFT
Sbjct: 532 E------LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFT 585

Query: 399 SLI 401
           +LI
Sbjct: 586 TLI 588



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 143/334 (42%), Gaps = 70/334 (20%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           Y++  +   P + +FN L       K  D  + L   +  TGL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF--------- 189
           G ++    +L  ++ S   PD VT  +L+  LC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 190 --GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G E DV TYN LI+GL   G  + A  L+EEM +     G+V  PD ITYS++IDGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 557

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K+                                               S+L  A ++F 
Sbjct: 558 KQ-----------------------------------------------SRLDEATQMFD 570

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           S+      PNVVT+  LI G C  G++D+         LF  +   G+  +  TY  LI 
Sbjct: 571 SMGSKSFSPNVVTFTTLINGYCKAGRVDDG------LELFCEMGRRGIVANAITYITLIC 624

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            F K+G ++    IF  ++ S   PD +T  +++
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++NIL   L     +     L++ +   G+ PD  TY+ +I+  CK  R+     
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +    F+P+ VTFT+LI   C   R+ +   LF ++   G   +  TY TLI G  
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           + G+   AL++F+EM +     GV   PD IT   ++ GL
Sbjct: 628 KVGNINGALDIFQEMISS----GVY--PDTITIRNMLTGL 661



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD M   +   P V +F  L     K    D  L LF  +   G+  +  TY  
Sbjct: 563 DEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           LI  F K+G ++    +   ++ S   PD +T  +++  L ++  +  A A+  KL++
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 168/331 (50%), Gaps = 28/331 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F  ML  RP  P V  FN L G + + +  D V+SL++++    +  D Y++ I
Sbjct: 63  EDAIDLFSDMLRSRP-LPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI CFC   ++       G++ +    PD VTFT+L+  LC + R+ EA  LF ++    
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---- 177

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  DV T+ TL+NGLCR G  + A+ L + M   NG      +PD ITY T +DG+CK  
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVE-NG-----LQPDQITYGTFVDGMCKMG 231

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            +            SALN +     +  ++   + +  +IDGLCK  +   +  LF  + 
Sbjct: 232 DTV-----------SALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQ 280

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ PN+VTYN +I G C  G+    +       L + +    + P++ TYN LIN F 
Sbjct: 281 DKGIFPNIVTYNCMIGGFCISGRWSAAQR------LLQEMLERKISPNVVTYNALINAFV 334

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G+      ++  +LP    P+ +T+ S+I
Sbjct: 335 KEGKFFEAAELYDEMLPRGIIPNTITYNSMI 365



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 179/391 (45%), Gaps = 54/391 (13%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D+ +   F+   CK    GD  S     AL +   M  +   +P V  ++ +   L K  
Sbjct: 216 DQITYGTFVDGMCKM---GDTVS-----ALNLLRKMEEISHIKPNVVIYSAIIDGLCKDG 267

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
            +    +LF  +   G+FP+  TYN +I  FC  GR S    +L  +L    +P+ VT+ 
Sbjct: 268 RHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYN 327

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           +LI     E +  EAA L+ ++   G   +  TYN++I+G C+      A ++F  MA  
Sbjct: 328 ALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATK 387

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-------SCMASFSALNKMAFYFPLV 277
                  C PD  T++T+IDG C      + +           +A+    N +   F LV
Sbjct: 388 G------CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 278 R--------VQCLCLNFLC--------LIDGLCKISKLKIARELFQSLPRA--------- 312
                     Q +  + +C        L+DGLC   KLK A E+F+++ ++         
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 501

Query: 313 --GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+V+TYNILI GL N+G+  E +       L++ +   G+ PD  TY+ +I+  C
Sbjct: 502 FNGVEPDVLTYNILICGLINEGKFLEAEE------LYEEMPHRGIVPDTITYSSMIDGLC 555

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K  R+     +F  +    F+P+ VTF +LI
Sbjct: 556 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 586



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 148/352 (42%), Gaps = 46/352 (13%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V ++N L     K   +     L+  +   G+ P+  TYN +I+ FCK  R+  
Sbjct: 317 RKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDA 376

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   +     +PD  TFT+LI   C   RI +   L  ++   G   +  TYNTLI+
Sbjct: 377 AEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIH 436

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMA 262
           G C  G    AL+L ++M +       VC PD +T +T++DGLC      + L  F  M 
Sbjct: 437 GFCLVGDLNAALDLSQQMISSG-----VC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 490

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFL---------------------------------CL 289
                   +  F  V    L  N L                                  +
Sbjct: 491 KSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 550

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           IDGLCK S+L  A ++F S+      PNVVT+N LI G C  G++D+         LF  
Sbjct: 551 IDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG------LELFCE 604

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +   G+  D   Y  LI  F K+G ++    IF  ++ S   PD +T  +++
Sbjct: 605 MGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 656



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 138/302 (45%), Gaps = 35/302 (11%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           Y++  +   P V +F  L       K  D  + L   +   GL  +  TYN LI+ FC +
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF--------- 189
           G ++    +  +++ S   PD VT  +L+  LC   ++ +A  +F  ++           
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 501

Query: 190 --GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G E DV TYN LI GL   G  + A  L+EEM +     G+V  PD ITYS++IDGLC
Sbjct: 502 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 555

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K++             F ++   +F   +V        F  LI+G CK  ++    ELF 
Sbjct: 556 KQSRLD-----EATQMFVSMGSKSFSPNVV-------TFNTLINGYCKAGRVDDGLELFC 603

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            + R G++ + + Y  LI G    G ++          +F+ + S+G++PD  T   ++ 
Sbjct: 604 EMGRRGIVADAIIYITLIYGFRKVGNIN------GALDIFQEMISSGVYPDTITIRNMLT 657

Query: 368 CF 369
            F
Sbjct: 658 GF 659



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
           L L  G  +I  L+ A +LF  + R+  +P+V+ +N L+      G +   +  + V  L
Sbjct: 50  LKLRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLM------GAVVRMERPDLVISL 103

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----- 401
           ++++    +  D+Y++ ILI CFC   ++      FG++      PD VTFT+L+     
Sbjct: 104 YQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCL 163

Query: 402 --KILEINSFFRQV 413
             ++ E    F Q+
Sbjct: 164 DHRVSEALDLFHQI 177



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 54/134 (40%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++ +   L K    D    +F  +      P+  T+N LIN +CK GRV  G  +
Sbjct: 542 PDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLEL 601

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + R     DA+ + +LI        I  A  +F ++   G   D  T   ++ G   
Sbjct: 602 FCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWS 661

Query: 208 TGHTIVALNLFEEM 221
                 A+ + E++
Sbjct: 662 KEELERAVAMLEDL 675



 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 45/105 (42%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN L     K    D  L LF  +   G+  D   Y  LI  F K+G ++    +
Sbjct: 577 PNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDI 636

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              ++ S   PD +T  +++    ++  +  A A+   L+ +  E
Sbjct: 637 FQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQRYQLE 681


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 177/354 (50%), Gaps = 35/354 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N  +  F+++L  +   PP   FN +   L K KH+ T LSL +++ L G+  D +T+NI
Sbjct: 42  NNLISSFNHLLLHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNI 101

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCF ++G  S  F +  +IL+  + P A+TF +LIK LC +  I +A     K+   G
Sbjct: 102 LINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQG 161

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             LD  +Y TLINGLC+ G    AL L + +       G + +P+A+ Y+ IID +CK  
Sbjct: 162 FHLDQVSYGTLINGLCKVGRITAALQLLKRVD------GKLVQPNAVMYNMIIDNMCKAK 215

Query: 251 GSAN-----------------FLGFSCMASFSALNKMAFYFPLV------RVQCLCLNFL 287
              +                 F   + ++ FSA++K+ +   L        +      F 
Sbjct: 216 LVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFN 275

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L+DG CK  K+  A+ +   + +  + P+VVTYN L+ G C+  ++++ K       +F
Sbjct: 276 ILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKD------IF 329

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             + S G+  ++  Y  ++N FCKI  V     +F  +      P+ VT++SLI
Sbjct: 330 DSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLI 383



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 165/340 (48%), Gaps = 43/340 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  ++  M+  R   P V ++N L    +     +  + LF ++    + P+ YT+NI
Sbjct: 218 NDAFDLYSQMVAKRIC-PDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNI 276

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ FCK G+V+   VVL  +++    PD VT+ SL+   C+ +++ +A  +F  +   G
Sbjct: 277 LVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGG 336

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE---PDAITYSTIIDGLC 247
              +V  Y T++NG C+      A+NLFEEM          C    P+ +TYS++IDGLC
Sbjct: 337 VIANVQIYTTMVNGFCKIKMVDEAINLFEEMR---------CRKIIPNVVTYSSLIDGLC 387

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLV-----RVQCL-CLNFLCLIDGLCKISKLKI 301
           K                  L ++ +   LV     R Q    + +  ++D LCK   +  
Sbjct: 388 K------------------LGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDK 429

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  L  +L   G+ P++ TY ILI+GLC  G++++ ++      +F+ L   G   D+Y 
Sbjct: 430 AIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQN------VFEDLLVKGYNLDVYA 483

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           Y ++I  FC  G       +  ++  +   P+A T+  +I
Sbjct: 484 YTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVI 523



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 154/369 (41%), Gaps = 60/369 (16%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   +FN L   L    H    L    ++   G   D+ +Y  LIN  CK+GR++    
Sbjct: 128 HPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQ 187

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L R+      P+AV +  +I ++C    + +A  L++++       DVFTYN LI+G  
Sbjct: 188 LLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFS 247

Query: 207 RTGHTIVALNLFEEMANGN---------------------GEFGVV--------CEPDAI 237
                  A++LF +M   N                      +  VV         +PD +
Sbjct: 248 AVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVV 307

Query: 238 TYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL------------- 282
           TY++++DG C   +   A  + F  MAS   +  +  Y  +V   C              
Sbjct: 308 TYNSLMDGYCSINKVNKAKDI-FDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEE 366

Query: 283 ---------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
                     + +  LIDGLCK+ ++  A +L   +   G  PN+VTY+ ++  LC    
Sbjct: 367 MRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALC---- 422

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
             +  H +    L   L   G+ PD+YTY ILI   C+ GR+     +F  +L   +  D
Sbjct: 423 --KNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLD 480

Query: 394 AVTFTSLIK 402
              +T +I+
Sbjct: 481 VYAYTVMIQ 489



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 1/149 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL + D M + R   P + +++ +   L K  H D  ++L   L   G+ PD YTY ILI
Sbjct: 395 ALKLVDEMHD-RGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILI 453

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              C+ GR+     V   +L   +  D   +T +I+  C +    +A AL +K+   GC 
Sbjct: 454 KGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCI 513

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            +  TY  +I  L        A  L  EM
Sbjct: 514 PNAKTYELVILSLFEKDENDTAEKLLREM 542



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 45/77 (58%)

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           + KH+ T   L +++   G+  D +T+NILINCF ++G  S  F IF +IL   + P A+
Sbjct: 73  KAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAI 132

Query: 396 TFTSLIKILEINSFFRQ 412
           TF +LIK L +     Q
Sbjct: 133 TFNTLIKGLCLKGHIHQ 149


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 168/331 (50%), Gaps = 28/331 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F  ML  RP  P V  FN L G + + +  D V+SL++++    +  D Y++ I
Sbjct: 63  EDAIDLFSDMLRSRP-LPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI CFC   ++       G++ +    PD VTFT+L+  LC + R+ EA  LF ++    
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI---- 177

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  DV T+ TL+NGLCR G  + A+ L + M   NG      +PD ITY T +DG+CK  
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVE-NG-----LQPDQITYGTFVDGMCKMG 231

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            +            SALN +     +  ++   + +  +IDGLCK  +   +  LF  + 
Sbjct: 232 DTV-----------SALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQ 280

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ PN+VTYN +I G C  G+    +       L + +    + P++ TYN LIN F 
Sbjct: 281 DKGIFPNIVTYNCMIGGFCISGRWSAAQR------LLQEMLERKISPNVVTYNALINAFV 334

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G+      ++  +LP    P+ +T+ S+I
Sbjct: 335 KEGKFFEAAELYDEMLPRGIIPNTITYNSMI 365



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 179/391 (45%), Gaps = 54/391 (13%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D+ +   F+   CK    GD  S     AL +   M  +   +P V  ++ +   L K  
Sbjct: 216 DQITYGTFVDGMCKM---GDTVS-----ALNLLRKMEEISHIKPNVVIYSAIIDGLCKDG 267

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
            +    +LF  +   G+FP+  TYN +I  FC  GR S    +L  +L    +P+ VT+ 
Sbjct: 268 RHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYN 327

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           +LI     E +  EAA L+ ++   G   +  TYN++I+G C+      A ++F  MA  
Sbjct: 328 ALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATK 387

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-------SCMASFSALNKMAFYFPLV 277
                  C PD  T++T+IDG C      + +           +A+    N +   F LV
Sbjct: 388 G------CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 278 R--------VQCLCLNFLC--------LIDGLCKISKLKIARELFQSLPRA--------- 312
                     Q +  + +C        L+DGLC   KLK A E+F+++ ++         
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 501

Query: 313 --GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+V+TYNILI GL N+G+  E +       L++ +   G+ PD  TY+ +I+  C
Sbjct: 502 FNGVEPDVLTYNILICGLINEGKFLEAEE------LYEEMPHRGIVPDTITYSSMIDGLC 555

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K  R+     +F  +    F+P+ VTF +LI
Sbjct: 556 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 586



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 148/352 (42%), Gaps = 46/352 (13%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V ++N L     K   +     L+  +   G+ P+  TYN +I+ FCK  R+  
Sbjct: 317 RKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDA 376

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   +     +PD  TFT+LI   C   RI +   L  ++   G   +  TYNTLI+
Sbjct: 377 AEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIH 436

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMA 262
           G C  G    AL+L ++M +       VC PD +T +T++DGLC      + L  F  M 
Sbjct: 437 GFCLVGDLNAALDLSQQMISSG-----VC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 490

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFL---------------------------------CL 289
                   +  F  V    L  N L                                  +
Sbjct: 491 KSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 550

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           IDGLCK S+L  A ++F S+      PNVVT+N LI G C  G++D+         LF  
Sbjct: 551 IDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDG------LELFCE 604

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +   G+  D   Y  LI  F K+G ++    IF  ++ S   PD +T  +++
Sbjct: 605 MGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 656



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 141/304 (46%), Gaps = 39/304 (12%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           Y++  +   P V +F  L       K  D  + L   +   GL  +  TYN LI+ FC +
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF--------- 189
           G ++    +  +++ S   PD VT  +L+  LC   ++ +A  +F  ++           
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 501

Query: 190 --GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G E DV TYN LI GL   G  + A  L+EEM +     G+V  PD ITYS++IDGLC
Sbjct: 502 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 555

Query: 248 KEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           K++    A  + F  M S S       + P V      + F  LI+G CK  ++    EL
Sbjct: 556 KQSRLDEATQM-FVSMGSKS-------FSPNV------VTFNTLINGYCKAGRVDDGLEL 601

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  + R G++ + + Y  LI G    G ++          +F+ + S+G++PD  T   +
Sbjct: 602 FCEMGRRGIVADAIIYITLIYGFRKVGNIN------GALDIFQEMISSGVYPDTITIRNM 655

Query: 366 INCF 369
           +  F
Sbjct: 656 LTGF 659



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
           L L  G  +I  L+ A +LF  + R+  +P+V+ +N L+      G +   +  + V  L
Sbjct: 50  LKLRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLM------GAVVRMERPDLVISL 103

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----- 401
           ++++    +  D+Y++ ILI CFC   ++      FG++      PD VTFT+L+     
Sbjct: 104 YQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCL 163

Query: 402 --KILEINSFFRQV 413
             ++ E    F Q+
Sbjct: 164 DHRVSEALDLFHQI 177



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 54/134 (40%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++ +   L K    D    +F  +      P+  T+N LIN +CK GRV  G  +
Sbjct: 542 PDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLEL 601

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + R     DA+ + +LI        I  A  +F ++   G   D  T   ++ G   
Sbjct: 602 FCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWS 661

Query: 208 TGHTIVALNLFEEM 221
                 A+ + E++
Sbjct: 662 KEELERAVAMLEDL 675



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 44/101 (43%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN L     K    D  L LF  +   G+  D   Y  LI  F K+G ++    +
Sbjct: 577 PNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDI 636

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
              ++ S   PD +T  +++    ++  +  A A+   L++
Sbjct: 637 FQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQM 677


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 173/338 (51%), Gaps = 25/338 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           +  I  N+A+ +F  M+  RP  P +  FN L   + K K YD V+SL K++ + G+  D
Sbjct: 164 LRDIKLNDAIDLFSDMVKSRPF-PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRND 222

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            YT+NI+INCFC   +VS    +LG++L+  + PD VT  SL+   C  +R+ +A +L  
Sbjct: 223 LYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 282

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           K+   G + D+  YN +I+ LC+T     A + F+E+            P+ +TY+ +++
Sbjct: 283 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG------IRPNVVTYTALVN 336

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           GLC              + +S   ++       ++    + +  L+D   K  K+  A+E
Sbjct: 337 GLCNS------------SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKE 384

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           LF+ + R  + P++VTY+ LI GLC   ++DE         +F  + S G   D+ +YN 
Sbjct: 385 LFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ------MFDLMVSKGCLADVVSYNT 438

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           LIN FCK  RV  G  +F  +       + VT+ +LI+
Sbjct: 439 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQ 476



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 179/338 (52%), Gaps = 27/338 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           ++ +  ++A+ +F  M+  RP  P +  F+ L   +AK   +D V+SL +++   G+  +
Sbjct: 671 LSELKLDDAVALFGEMVKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHN 729

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            YTY+ILINCFC+  ++     VLG++++  + P+ VT +SL+   C   RI EA AL  
Sbjct: 730 HYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVD 789

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTII 243
           ++ V G + +  T+NTLI+GL        A+ L + M A G       C+PD +TY  ++
Sbjct: 790 QMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG-------CQPDLVTYGVVV 842

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           +GLCK   +          +F+ LNKM       +++   L +  +IDGLCK   +  A 
Sbjct: 843 NGLCKRGDTD--------LAFNLLNKM----EQGKLEPGVLIYNTIIDGLCKYKHMDDAL 890

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            LF+ +   G+ PNVVTY+ LI  LCN G+  +         L   +    + PD++T++
Sbjct: 891 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR------LLSDMIERKINPDVFTFS 944

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            LI+ F K G++     ++  ++     P  VT++SLI
Sbjct: 945 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLI 982



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 158/319 (49%), Gaps = 32/319 (10%)

Query: 87   RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
             P V  +N +   L K KH D  L+LFK +   G+ P+  TY+ LI+C C  GR S    
Sbjct: 867  EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 926

Query: 147  VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            +L  ++     PD  TF++LI     E +++EA  L+ ++     +  + TY++LING C
Sbjct: 927  LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 986

Query: 207  RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMA 262
                   A  +FE M + +      C PD +TY+T+I G CK    E G         M 
Sbjct: 987  MHDRLDEAKQMFEFMVSKH------CFPDVVTYNTLIKGFCKYKRVEEG---------ME 1031

Query: 263  SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
             F  +++       V        +  LI GL +     +A+E+F+ +   G+ PN++TYN
Sbjct: 1032 VFREMSQRGLVGNTV-------TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 1084

Query: 323  ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
             L+ GLC +G++      E   ++F+ L  + + P +YTYNI+I   CK G+V  G+ +F
Sbjct: 1085 TLLDGLCKNGKL------EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 1138

Query: 383  GRILPSCFTPDAVTFTSLI 401
              +      PD V + ++I
Sbjct: 1139 CNLSLKGVKPDVVAYNTMI 1157



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 129/309 (41%), Gaps = 26/309 (8%)

Query: 72   EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
            EA  ++D M+  R   P + +++ L          D    +F+ +     FPD  TYN L
Sbjct: 958  EAEKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 1016

Query: 132  INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
            I  FCK  RV  G  V   + +     + VT+  LI+ L        A  +F ++   G 
Sbjct: 1017 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 1076

Query: 192  ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              ++ TYNTL++GLC+ G    A+ +FE +           EP   TY+ +I+G+CK   
Sbjct: 1077 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK------MEPTIYTYNIMIEGMCKAGK 1130

Query: 252  SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
              +     C  S   +       P V      + +  +I G C+    + A  LF+ +  
Sbjct: 1131 VEDGWDLFCNLSLKGVK------PDV------VAYNTMISGFCRKGSKEEADALFKEMKE 1178

Query: 312  AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
             G +PN   YN LIR    DG  + +        L K + S G   D  T  ++ N    
Sbjct: 1179 DGTLPNSGCYNTLIRARLRDGDREASAE------LIKEMRSCGFAGDASTIGLVTNMLHD 1232

Query: 372  IGRVSSGFV 380
             GR+   F+
Sbjct: 1233 -GRLDKSFL 1240



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 147/392 (37%), Gaps = 103/392 (26%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ + D M+ +   +P + ++N +   L KTK  +     FK +   G+ P+  TY  
Sbjct: 275 SDAVSLVDKMVEI-GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 333

Query: 131 LINCFCKMGRVSHG-------------------------FVVLGRIL----------RSC 155
           L+N  C   R S                           FV  G++L          R  
Sbjct: 334 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 393

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF------------------- 196
             PD VT++SLI  LC   RI EA  +F  +   GC  DV                    
Sbjct: 394 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 453

Query: 197 ----------------TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
                           TYNTLI G  + G    A   F +M      FG+   PD  TY+
Sbjct: 454 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF----FGI--SPDIWTYN 507

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
            ++ GLC        L       F  + K      +V        +  +I G+CK  K++
Sbjct: 508 ILLGGLCDNGELEKAL-----VIFEDMQKREMDLDIV-------TYTTVIRGMCKTGKVE 555

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A  LF SL   GL P++VTY  ++ GLC  G + E      V  L+ ++   GL  +  
Sbjct: 556 EAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHE------VEALYTKMKQEGLMKN-- 607

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
                 +C    G ++    +  ++L   + P
Sbjct: 608 ------DCTLSDGDITLSAELIKKMLSCGYAP 633



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 114/265 (43%), Gaps = 24/265 (9%)

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++     + G +++S   P  + F+ L+  +   ++     +L  +++  G   + +TY+
Sbjct: 675 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 734

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LIN  CR     +AL +  +M     + G   EP+ +T S++++G C            
Sbjct: 735 ILINCFCRRSQLPLALAVLGKMM----KLGY--EPNIVTLSSLLNGYCHSKR-------- 780

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            ++   AL    F   +   Q   + F  LI GL   +K   A  L   +   G  P++V
Sbjct: 781 -ISEAVALVDQMF---VTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLV 836

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY +++ GLC  G  D        F L  ++    L P +  YN +I+  CK   +    
Sbjct: 837 TYGVVVNGLCKRGDTD------LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 890

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            +F  +      P+ VT++SLI  L
Sbjct: 891 NLFKEMETKGIRPNVVTYSSLISCL 915


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/346 (34%), Positives = 163/346 (47%), Gaps = 47/346 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A+  F+ ML MRP  PP   FN +   L K K Y TV+SLFK+    G+ PD  T +I
Sbjct: 40  HHAVASFNLMLLMRPP-PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSI 98

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC    ++  F V   IL+  F PDA+T  +LIK LC    I +      ++   G
Sbjct: 99  LINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQG 158

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +LD  +Y TLINGLC+ G T     L  ++       G   +PD + Y+TII+ LCK  
Sbjct: 159 FQLDQVSYGTLINGLCKAGETKAVARLLRKLE------GHSVKPDVVMYNTIINSLCKN- 211

Query: 251 GSANFLGFSC---------------------MASFSALNKMAFYFPLVRVQCL------C 283
                LG +C                     +  F  + KM   F L+    L       
Sbjct: 212 ---KLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDV 268

Query: 284 LNFLCLIDGLCKISKLKIARE---LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
             F  LID L K  K K+  E   LF+ +    ++P++VTYN LI GLC +       H 
Sbjct: 269 YTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKN------HHL 322

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           E    L K +   G+ PD+Y+Y IL++  CK GR+      F  +L
Sbjct: 323 ERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLL 368



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 133/279 (47%), Gaps = 27/279 (9%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            S+  L   L K      V  L ++L    + PD   YN +IN  CK   +     V   
Sbjct: 164 VSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSE 223

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           ++    +PD VT+T+LI   C   ++ EA +L  ++++     DV+T++ LI+ L + G 
Sbjct: 224 MIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGK 283

Query: 211 TIV---ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
             +   A++LFEEM + N        PD +TY+++IDGLCK              + + L
Sbjct: 284 KKMVDEAMSLFEEMKHKN------MIPDIVTYNSLIDGLCK--------NHHLERAIALL 329

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +M  +     +Q    ++  L+DGLCK  +L+IA+E FQ L   G   NV  YN++I G
Sbjct: 330 KEMKEH----GIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMING 385

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           LC  G   E    ++      ++   G  P+  T+  +I
Sbjct: 386 LCKAGLFGEAMDLKS------KMEGKGCMPNAITFRTII 418



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 121/258 (46%), Gaps = 27/258 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N +   L K K       ++  + + G+ PD  TY  LI+ FC MG++   F 
Sbjct: 195 KPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFS 254

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESR---IMEAAALFTKLRVFGCELDVFTYNTLIN 203
           +L  +      PD  TF+ LI  L  E +   + EA +LF +++      D+ TYN+LI+
Sbjct: 255 LLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLID 314

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GLC+  H   A+ L +EM     E G+  +PD  +Y+ ++DGLCK               
Sbjct: 315 GLCKNHHLERAIALLKEMK----EHGI--QPDVYSYTILLDGLCKGG------------- 355

Query: 264 FSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
              L     +F  + V+   LN   +  +I+GLCK      A +L   +   G MPN +T
Sbjct: 356 --RLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAIT 413

Query: 321 YNILIRGLCNDGQMDETK 338
           +  +I  L    + D+ +
Sbjct: 414 FRTIICALSEKDENDKAE 431



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 100/219 (45%), Gaps = 26/219 (11%)

Query: 51  QFLKERCKSSGEGDITSITPN--------EALCVFDYM---------LNMRPSRPPVTSF 93
           + L + C    E  +  I+P+           C+   M         + ++   P V +F
Sbjct: 212 KLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTF 271

Query: 94  NILFGCLAK---TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
           ++L   L K    K  D  +SLF+ +    + PD  TYN LI+  CK   +     +L  
Sbjct: 272 SVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKE 331

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +      PD  ++T L+  LC   R+  A   F  L V GC L+V+ YN +INGLC+ G 
Sbjct: 332 MKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGL 391

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
              A++L  +M  G G     C P+AIT+ TII  L ++
Sbjct: 392 FGEAMDLKSKM-EGKG-----CMPNAITFRTIICALSEK 424



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 30/250 (12%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P    F +++  L    R     +LF +    G   D+ T + LIN  C   H  +A ++
Sbjct: 56  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 115

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
           F  +            PDAIT +T+I GLC       F G         + K  ++   V
Sbjct: 116 FANILKRG------FHPDAITLNTLIKGLC-------FRG--------EIKKTLYFHDQV 154

Query: 278 RVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
             Q   L+   +  LI+GLCK  + K    L + L    + P+VV YN +I  LC +  +
Sbjct: 155 VAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLL 214

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
            +         ++  +   G+ PD+ TY  LI+ FC +G++   F +   +      PD 
Sbjct: 215 GDACD------VYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDV 268

Query: 395 VTFTSLIKIL 404
            TF+ LI  L
Sbjct: 269 YTFSVLIDAL 278



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F+ M   +   P + ++N L   L K  H +  ++L K +   G+ PD Y+Y I
Sbjct: 288 DEAMSLFEEM-KHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTI 346

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK GR+         +L      +   +  +I  LC      EA  L +K+   G
Sbjct: 347 LLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKG 406

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           C  +  T+ T+I  L        A  +  EM
Sbjct: 407 CMPNAITFRTIICALSEKDENDKAEKILREM 437


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 172/348 (49%), Gaps = 36/348 (10%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           F+ +LN+ P+ PP+  F  + G L K   Y T +SL + +   G+  D  T+NILINCF 
Sbjct: 44  FNRILNINPT-PPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFS 102

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           ++G     F V   IL+  + P+A+T T+LIK LC + +I +A     K+   G  L+  
Sbjct: 103 QLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKV 162

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-EAGSANF 255
            Y TLINGLC+ G T  AL L   +       G + +P+ + Y+TIID +CK +  +  F
Sbjct: 163 CYGTLINGLCKVGQTSAALQLLRRVD------GKLVQPNVVMYNTIIDSMCKVKLVNEAF 216

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCL----------------------CLNFLCLIDGL 293
             +S M S      +  Y  L+   C+                         F  L+DG 
Sbjct: 217 DLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGF 276

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK  ++K A+ +   + + G+ P+VVTY  L+ G C   Q+++ K       +F  +   
Sbjct: 277 CKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKS------IFNTMAQG 330

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G+  ++ +YNI+IN FCKI +V     +F  +      PD VT+ SLI
Sbjct: 331 GVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLI 378



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 159/337 (47%), Gaps = 37/337 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  ++  M++   S P V +++ L          +  + LF ++    + PD YT++I
Sbjct: 213 NEAFDLYSEMVSKGIS-PDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSI 271

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ FCK GRV     VL  +++    PD VT+ SL+   C   ++ +A ++F  +   G
Sbjct: 272 LVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGG 331

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +V +YN +ING C+      A+NLF+EM   N        PD +TY+++IDGLCK  
Sbjct: 332 VTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKN------IIPDVVTYNSLIDGLCKSG 385

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARE 304
                             K+++   LV       V    + +  ++D LCK  ++  A  
Sbjct: 386 ------------------KISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIA 427

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L   +   G+ P++ TY ILI GLC  G++ + ++      +F+ L   G    +YTY +
Sbjct: 428 LLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQN------IFEDLLVKGYNITVYTYTV 481

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +I  FC          +  ++  +   P+A T+  +I
Sbjct: 482 MIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIII 518



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 154/351 (43%), Gaps = 51/351 (14%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +  L   L K       L L +R++   + P+   YN +I+  CK+  V+  F +   ++
Sbjct: 164 YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMV 223

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
               +PD VT+++LI   C   ++ +A  LF K+       DV+T++ L++G C+ G   
Sbjct: 224 SKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVK 283

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKM 270
            A N+   M           +PD +TY +++DG C  K+   A           S  N M
Sbjct: 284 EAKNVLAMMMKQG------IKPDVVTYCSLMDGYCLVKQVNKAK----------SIFNTM 327

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
           A       VQ    ++  +I+G CKI K+  A  LF+ +    ++P+VVTYN LI GLC 
Sbjct: 328 AQGGVTANVQ----SYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCK 383

Query: 331 DGQM-------DE----------------------TKHYETVFLLFKRLNSTGLFPDLYT 361
            G++       DE                          +    L  ++   G+ PD+YT
Sbjct: 384 SGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYT 443

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           Y ILI+  CK GR+     IF  +L   +     T+T +I+    N  F +
Sbjct: 444 YTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDK 494



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 1/149 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL + D M +       +T +N +   L K    D  ++L  ++   G+ PD YTY ILI
Sbjct: 390 ALKLVDEMHDRGVPHDKIT-YNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILI 448

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK GR+     +   +L   +     T+T +I+  C      +A AL +K+   GC 
Sbjct: 449 DGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCI 508

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            +  TY  +I  L       +A  L  EM
Sbjct: 509 PNAKTYEIIILSLFEKDENDMAEKLLREM 537



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%)

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
           Y+T   L + +   G+  DL T+NILINCF ++G     F +F  IL   + P+A+T T+
Sbjct: 72  YQTAISLHREMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTT 131

Query: 400 LIKIL 404
           LIK L
Sbjct: 132 LIKGL 136


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 170/331 (51%), Gaps = 24/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F  ML  RP  P V  F  L G + + +  D V+SL++++    +  D Y++NI
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI CFC   ++       G+I +    PD VTFT+L+  LC E R+ EA   F ++    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V T+ TL+NGLCR G  + A+ L + M     E G+  +P  ITY TI+DG+CK+ 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMM----EDGL--QPTQITYGTIVDGMCKKG 233

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            + + L          + +++   P V +      +  +ID LCK  +   A+ LF  + 
Sbjct: 234 DTVSALNL-----LRKMEEVSHIIPNVVI------YSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P++ TYN +I G C+ G+  + +       L + +    + PD+ TYN LIN F 
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQ------LLQEMLERKISPDVVTYNALINAFV 336

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G+      ++  +LP    P+ +T+ S+I
Sbjct: 337 KEGKFFEAAELYDEMLPRGIIPNTITYNSMI 367



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 151/318 (47%), Gaps = 13/318 (4%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V ++N L     K   +     L+  +   G+ P+  TYN +I+ FCK  R+  
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDA 378

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   +     +PD  TFT+LI   C   RI +   L  ++   G   +  TYNTLI+
Sbjct: 379 AEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIH 438

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C  G    AL+L ++M +       VC PD +T +T++DGLC      + L       
Sbjct: 439 GFCLVGDLNAALDLSQQMISSG-----VC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 492

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            S ++  A + P   V+   L +  LI GL    K   A EL++ +P  G++P+ +TY+ 
Sbjct: 493 KSKMDLDASH-PFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSS 551

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +I GLC   ++DE         +F  + S    P++ T+N LIN +CK GRV  G  +F 
Sbjct: 552 MIDGLCKQSRLDEATQ------MFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFC 605

Query: 384 RILPSCFTPDAVTFTSLI 401
            +       DA+ + +LI
Sbjct: 606 EMGRRGIVADAIIYITLI 623



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 164/348 (47%), Gaps = 46/348 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  ++ +   L K   +    +LF  +   G+FPD +TYN +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L    +PD VT+ +LI     E +  EAA L+ ++   G   +  TYN++I+G C+
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCK 372

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-------SC 260
                 A ++F  MA         C PD  T++T+IDG C      + +           
Sbjct: 373 QDRLDAAEDMFYLMATKG------CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGL 426

Query: 261 MASFSALNKMAFYFPLVR--------VQCLCLNFLC--------LIDGLCKISKLKIARE 304
           +A+    N +   F LV          Q +  + +C        L+DGLC   KLK A E
Sbjct: 427 VANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALE 486

Query: 305 LFQSLPRA-----------GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           +F+++ ++           G+ P+V+TYNILI GL N+G+  E +       L++ +   
Sbjct: 487 MFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEE------LYEEMPHR 540

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G+ PD  TY+ +I+  CK  R+     +F  +    F+P+ VTF +LI
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLI 588



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 141/334 (42%), Gaps = 70/334 (20%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           Y++  +   P V +F  L       K  D  + L   +   GL  +  TYN LI+ FC +
Sbjct: 384 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 443

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF--------- 189
           G ++    +  +++ S   PD VT  +L+  LC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 503

Query: 190 --GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G E DV TYN LI GL   G  + A  L+EEM +     G+V  PD ITYS++IDGLC
Sbjct: 504 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 557

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K+                                               S+L  A ++F 
Sbjct: 558 KQ-----------------------------------------------SRLDEATQMFV 570

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           S+      PNVVT+N LI G C  G++D+         LF  +   G+  D   Y  LI 
Sbjct: 571 SMGSKSFSPNVVTFNTLINGYCKAGRVDDG------LELFCEMGRRGIVADAIIYITLIY 624

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            F K+G ++    IF  ++ S   PD +T  +++
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 6/159 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++NIL   L     +     L++ +   G+ PD  TY+ +I+  CK  R+     
Sbjct: 508 EPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +    F+P+ VTF +LI   C   R+ +   LF ++   G   D   Y TLI G  
Sbjct: 568 MFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFR 627

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           + G+   AL++F+EM +     GV   PD IT   ++ G
Sbjct: 628 KVGNINGALDIFQEMISS----GVY--PDTITIRNMLTG 660



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 55/139 (39%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++ +   L K    D    +F  +      P+  T+N LIN +CK GRV  G  +
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLEL 603

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + R     DA+ + +LI        I  A  +F ++   G   D  T   ++ G   
Sbjct: 604 FCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWS 663

Query: 208 TGHTIVALNLFEEMANGNG 226
                 A+ + E++    G
Sbjct: 664 KEELERAVAMLEDLQMSVG 682


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 115/336 (34%), Positives = 163/336 (48%), Gaps = 28/336 (8%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +   AL  F  M+ M P  P    F  LFG + K KHY T +SL K +   G+ PD YT 
Sbjct: 51  SEEAALSFFHKMVVMNP-LPREKDFTKLFGIIVKMKHYATTISLIKHIYSLGIKPDVYTL 109

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            I+INC C +     GF VLG + +    P  VTF +LI  LCAE  +  AA     L  
Sbjct: 110 TIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLED 169

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + + +TY  +INGLC+ G T  A+   E++   N +  VV     I YSTI+D LCK
Sbjct: 170 MGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVV-----IAYSTIMDSLCK 224

Query: 249 EAGSANFLGFSCMA--SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
           +       G  C A   FS +        LV        +  LI GLC   + K A  L 
Sbjct: 225 D-------GMVCEALNLFSGMTSKGIQPDLVA-------YNSLIHGLCNFGRWKEATTLL 270

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            ++ R G+MPNV T+N+L+   C DG +   K       +   +   G+ PD+ TYN +I
Sbjct: 271 GNMMRKGIMPNVQTFNVLVDNFCKDGMISRAK------TIMGFMVHVGVEPDVVTYNSVI 324

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  C + ++     +F  ++   F P+ VT++SLI 
Sbjct: 325 SGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIH 360



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 153/318 (48%), Gaps = 36/318 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +F  M + +  +P + ++N L   L     +    +L   +   G+ P+  T+N+L
Sbjct: 230 EALNLFSGMTS-KGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVL 288

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ FCK G +S    ++G ++     PD VT+ S+I   C  S++ +A  +F  +   G 
Sbjct: 289 VDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGF 348

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--- 248
             ++ TY++LI+G C+T +   AL L  EM N          PD +T+ST+I G CK   
Sbjct: 349 LPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSG------LNPDVVTWSTLIGGFCKAGK 402

Query: 249 -EAGSANFLGF----------SCMASFSALNKMAFY------FPLVRVQCLCLNFL---C 288
            EA    F             +C      L K  F+      F  +    L LN +    
Sbjct: 403 PEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNI 462

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           ++DG+C   KL  A+ELF  LP  G+  +VV Y  +I+GLC +G +D+ ++      L  
Sbjct: 463 VLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAEN------LLM 516

Query: 349 RLNSTGLFPDLYTYNILI 366
           ++   G  P+ +TYN+ +
Sbjct: 517 KMEENGCLPNEFTYNVFV 534



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 60/127 (47%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++     P + +  I+   L K + +   +SLF+ +    L  +   YNI+++  C  G+
Sbjct: 413 MHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNIVLDGMCSFGK 472

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           ++    +   +       D V +T++IK LC E  + +A  L  K+   GC  + FTYN 
Sbjct: 473 LNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYNV 532

Query: 201 LINGLCR 207
            + GL +
Sbjct: 533 FVRGLLQ 539


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 173/338 (51%), Gaps = 25/338 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           +  I  N+A+ +F  M+  RP  P +  FN L   + K K YD V+SL K++ + G+  D
Sbjct: 61  LRDIKLNDAIDLFSDMVKSRPF-PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRND 119

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            YT+NI+INCFC   +VS    +LG++L+  + PD VT  SL+   C  +R+ +A +L  
Sbjct: 120 LYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 179

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           K+   G + D+  YN +I+ LC+T     A + F+E+            P+ +TY+ +++
Sbjct: 180 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG------IRPNVVTYTALVN 233

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           GLC              + +S   ++       ++    + +  L+D   K  K+  A+E
Sbjct: 234 GLCNS------------SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKE 281

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           LF+ + R  + P++VTY+ LI GLC   ++DE         +F  + S G   D+ +YN 
Sbjct: 282 LFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQ------MFDLMVSKGCLADVVSYNT 335

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           LIN FCK  RV  G  +F  +       + VT+ +LI+
Sbjct: 336 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQ 373



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 147/392 (37%), Gaps = 103/392 (26%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ + D M+ +   +P + ++N +   L KTK  +     FK +   G+ P+  TY  
Sbjct: 172 SDAVSLVDKMVEI-GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230

Query: 131 LINCFCKMGRVSHG-------------------------FVVLGRIL----------RSC 155
           L+N  C   R S                           FV  G++L          R  
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF------------------- 196
             PD VT++SLI  LC   RI EA  +F  +   GC  DV                    
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350

Query: 197 ----------------TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
                           TYNTLI G  + G    A   F +M      FG+   PD  TY+
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM----DFFGI--SPDIWTYN 404

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
            ++ GLC        L       F  + K      +V        +  +I G+CK  K++
Sbjct: 405 ILLGGLCDNGELEKAL-----VIFEDMQKREMDLDIV-------TYTTVIRGMCKTGKVE 452

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A  LF SL   GL P++VTY  ++ GLC  G + E +       L+ ++   GL  +  
Sbjct: 453 EAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA------LYTKMKQEGLMKN-- 504

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
                 +C    G ++    +  ++L   + P
Sbjct: 505 ------DCTLSDGDITLSAELIKKMLSCGYAP 530


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 189/401 (47%), Gaps = 63/401 (15%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           +ER +S     I  I  ++A+ +F  M   RP RP +  F+ LF  +A+TK YD VL L 
Sbjct: 41  RERLRSG----IVDIKEDDAVDLFQEMTRSRP-RPRLIDFSRLFSVVARTKQYDLVLDLC 95

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           K++ L G+  + YT +I+INC C+  ++S  F  +G+I++  + PD VTF++LI  LC E
Sbjct: 96  KQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLE 155

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE------ 227
            R+ EA  L  ++   G +  + T N L+NGLC  G    A+ L + M     +      
Sbjct: 156 GRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTY 215

Query: 228 ---FGVVCEP--------------------DAITYSTIIDGLCKEAGSAN-FLGFSCMAS 263
                V+C+                     DA+ YS IIDGLCK+    N F  F+ M  
Sbjct: 216 GPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 275

Query: 264 FSALNKMAFYFPLVRVQCLC----------------------LNFLCLIDGLCKISKLKI 301
                 +  Y  L+R  C                        + F  LID   K  KL+ 
Sbjct: 276 KGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 335

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A EL + + + G+ P+ VTY  LI G C + Q+D+  H      +   + S G  P++ T
Sbjct: 336 AEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANH------MLDLMVSKGCGPNIRT 389

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +NILIN +CK   +  G  +F ++       D VT+ +LI+
Sbjct: 390 FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQ 430



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 146/341 (42%), Gaps = 46/341 (13%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +F+ L  C  K         L K +   G+ PD  TY  LI+ FCK  ++  
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +L  ++     P+  TF  LI   C  + I +   LF K+ + G   D  TYNTLI 
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQ 430

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C  G   VA  LF+EM +          PD ++Y  ++DGLC        L       
Sbjct: 431 GFCELGKLEVAKELFQEMVSRR------VRPDIVSYKILLDGLCDNGEPEKALEI----- 479

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F  + K      +         +  +I G+C  SK+  A +LF SLP  G+ P+V TYNI
Sbjct: 480 FEKIEKSKMELDIGI-------YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNI 532

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS------ 377
           +I GLC  G + E        LLF+++   G  P+  TYNILI      G  +       
Sbjct: 533 MIGGLCKKGSLSEAD------LLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIE 586

Query: 378 -----GFVI-----------FGRILPSCFTPDAVTFTSLIK 402
                GF +             R+L +   PD  TFT+L++
Sbjct: 587 EIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLR 627



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 155/351 (44%), Gaps = 47/351 (13%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R  +     ++I+   L K    D   +LF  + + G   D   Y  LI  FC  GR
Sbjct: 238 MEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGR 297

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
              G  +L  +++   TPD V F++LI     E ++ EA  L  ++   G   D  TY +
Sbjct: 298 WDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTS 357

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+G C+      A ++ + M +        C P+  T++ +I+G CK    AN +    
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKG------CGPNIRTFNILINGYCK----ANLID--- 404

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                   KM+    L  V    + +  LI G C++ KL++A+ELFQ +    + P++V+
Sbjct: 405 -DGLELFRKMS----LRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVS 459

Query: 321 YNILIRGLCNDGQ-----------------------------MDETKHYETVFLLFKRLN 351
           Y IL+ GLC++G+                             M      +  + LF  L 
Sbjct: 460 YKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP 519

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             G+ PD+ TYNI+I   CK G +S   ++F ++     +P+  T+  LI+
Sbjct: 520 LKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIR 570



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 148/348 (42%), Gaps = 70/348 (20%)

Query: 78  DYMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           ++ML++  S+   P + +FNIL     K    D  L LF++++L G+  D  TYN LI  
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL---------------------------- 166
           FC++G++     +   ++     PD V++  L                            
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELD 491

Query: 167 -------IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
                  I  +C  S++ +A  LF  L + G + DV TYN +I GLC+ G    A  LF 
Sbjct: 492 IGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFR 551

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAG---SANFL------GFSCMAS-----FS 265
           +M   +G       P+  TY+ +I     E     SA  +      GFS  AS      S
Sbjct: 552 KMEE-DGH-----SPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALS 605

Query: 266 ALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            L +M  A + P V      L   CL +     + +  A  LF+++   G  PNVVTYN 
Sbjct: 606 TLARMLKAGHEPDVFTFTTLLRPFCLEEN----ASVYDAPTLFKNMKAMGYKPNVVTYNT 661

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           +I+GL N   + +      +  +F+R    G  P+  T +  I+  CK
Sbjct: 662 VIKGLLNGNMISQVPG--VLDQMFER----GCQPNAVTKSTFISGLCK 703



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 94/202 (46%), Gaps = 32/202 (15%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L ++  +P V ++NI+ G L K         LF+++   G  P+  TYNILI      G 
Sbjct: 518 LPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGD 577

Query: 141 VSH-----------GFVV-----------LGRILRSCFTPDAVTFTSLIKDLCAE--SRI 176
            +            GF V           L R+L++   PD  TFT+L++  C E  + +
Sbjct: 578 ATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASV 637

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
            +A  LF  ++  G + +V TYNT+I GL           + ++M      F   C+P+A
Sbjct: 638 YDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQM------FERGCQPNA 691

Query: 237 ITYSTIIDGLCKE--AGSANFL 256
           +T ST I GLCK+   GSA  L
Sbjct: 692 VTKSTFISGLCKQDLHGSAILL 713



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +I+  C+  KL +A      + + G  P+ VT++ LI GLC +G++ E         L  
Sbjct: 113 MINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEA------LELVD 166

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           R+   G  P L T N L+N  C  G+VS   ++  R++ + F P+ VT+  ++K++
Sbjct: 167 RMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVM 222



 Score = 39.3 bits (90), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           ++F  L   + +  +  +  +L + +   G+  N+ T +I+I   C        +     
Sbjct: 73  IDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCC------RCRKLSLA 126

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           F    ++   G  PD  T++ LIN  C  GRVS    +  R++     P  +T  +L+  
Sbjct: 127 FSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNG 186

Query: 404 LEINS 408
           L +N 
Sbjct: 187 LCLNG 191


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 189/396 (47%), Gaps = 42/396 (10%)

Query: 32  YPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVT 91
           Y  TT  LR  +   +   +F  +  K + +        ++A+ +F  ++ M P  P V 
Sbjct: 21  YAATTTRLRYAISKFSVFLRFFSDSQKQNAKKKSGFDAIDDAVALFTRLITMHP-LPSVV 79

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
            FN++ G + K KHY T +SL K++ L G+ P   T +ILINC+C +G +   F VLG +
Sbjct: 80  EFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVLGMV 139

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           L+  +  +A+T T+++K LC    + +A      +   G  LD  TY TLINGLC+ G T
Sbjct: 140 LKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLT 199

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA----------------GSANF 255
             A  L  +M       G V  P+ + Y+ I+DGLCK+                    + 
Sbjct: 200 REAFELLHKME------GQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDV 253

Query: 256 LGFSCM-ASFSALNKMAFYFPLVRVQCLCLN---------FLCLIDGLCKISKLKIAREL 305
             ++C+   F  L +   +  + R+ C  ++         +  LID LCK   L  A ++
Sbjct: 254 FTYTCLIHGFCGLGQ---WREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDM 310

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
              +   G  P++VT+N L+ G C    + E +       LF      G+ PD+++YNIL
Sbjct: 311 RNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARK------LFDTFAECGITPDVWSYNIL 364

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           I  +CK  R+     +F ++      P+ VT++SLI
Sbjct: 365 IIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLI 400



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 137/275 (49%), Gaps = 24/275 (8%)

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           YTYNILI+  CK G +     +   ++     PD VTF +L+   C  + ++EA  LF  
Sbjct: 289 YTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDT 348

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
               G   DV++YN LI G C+      AL+LF +M            P+ +TYS++IDG
Sbjct: 349 FAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKK------LAPNIVTYSSLIDG 402

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           LCK +G  ++        FSA++      P   V    + +  ++D LCKI  +  A EL
Sbjct: 403 LCK-SGRISY----AWELFSAIHDGG---PSPNV----ITYNIMLDALCKIQLVDKAIEL 450

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  +   GL PNV +YNILI G C   ++DE  +      LF+ ++   L PD  TYN L
Sbjct: 451 FNLMFERGLTPNVSSYNILINGYCKSKRIDEAMN------LFEEMHRRNLVPDSVTYNCL 504

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           I+  CK GR+S  + +F  +       D +T+  L
Sbjct: 505 IDGLCKSGRISHAWELFNVMHDGGPPVDVITYNIL 539



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 150/315 (47%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V  +N++   L K         L+  +   G+ PD +TY  LI+ FC +G+      
Sbjct: 215 RPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTR 274

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++      +  T+  LI  LC +  + +A  +   +   G   D+ T+NTL++G C
Sbjct: 275 LLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYC 334

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                + A  LF+  A    E G+   PD  +Y+ +I G CK              + S 
Sbjct: 335 LYNDVVEARKLFDTFA----ECGIT--PDVWSYNILIIGYCKNN--------RIDEALSL 380

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            NKM +     ++    + +  LIDGLCK  ++  A ELF ++   G  PNV+TYNI++ 
Sbjct: 381 FNKMNYK----KLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLD 436

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC    +D  K  E   L+F+R    GL P++ +YNILIN +CK  R+     +F  + 
Sbjct: 437 ALCKIQLVD--KAIELFNLMFER----GLTPNVSSYNILINGYCKSKRIDEAMNLFEEMH 490

Query: 387 PSCFTPDAVTFTSLI 401
                PD+VT+  LI
Sbjct: 491 RRNLVPDSVTYNCLI 505



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 87/163 (53%), Gaps = 6/163 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+NIL     K    D  LSLF ++N   L P+  TY+ LI+  CK GR+S+ + +
Sbjct: 356 PDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWEL 415

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              I     +P+ +T+  ++  LC    + +A  LF  +   G   +V +YN LING C+
Sbjct: 416 FSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCK 475

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           +     A+NLFEEM   N        PD++TY+ +IDGLCK  
Sbjct: 476 SKRIDEAMNLFEEMHRRN------LVPDSVTYNCLIDGLCKSG 512



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 107/241 (44%), Gaps = 18/241 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  RP + +FN L               LF      G+ PD ++YNILI  +CK  R+  
Sbjct: 317 RGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDE 376

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +  ++      P+ VT++SLI  LC   RI  A  LF+ +   G   +V TYN +++
Sbjct: 377 ALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLD 436

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
            LC+      A+ LF  M      F     P+  +Y+ +I+G CK            M  
Sbjct: 437 ALCKIQLVDKAIELFNLM------FERGLTPNVSSYNILINGYCKSKRID-----EAMNL 485

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F  +++       V        + CLIDGLCK  ++  A ELF  +   G   +V+TYNI
Sbjct: 486 FEEMHRRNLVPDSV-------TYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNI 538

Query: 324 L 324
           L
Sbjct: 539 L 539



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 1/140 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  +F  + +  PS P V ++NI+   L K +  D  + LF  +   GL P+  +YNILI
Sbjct: 412 AWELFSAIHDGGPS-PNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILI 470

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N +CK  R+     +   + R    PD+VT+  LI  LC   RI  A  LF  +   G  
Sbjct: 471 NGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPP 530

Query: 193 LDVFTYNTLINGLCRTGHTI 212
           +DV TYN L +   +  H I
Sbjct: 531 VDVITYNILFDAFSKIQHVI 550



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 7/178 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F+ M N +   P + +++ L   L K+        LF  ++  G  P+  TYNI
Sbjct: 375 DEALSLFNKM-NYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNI 433

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++  CK+  V     +   +     TP+  ++  LI   C   RI EA  LF ++    
Sbjct: 434 MLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRN 493

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
              D  TYN LI+GLC++G    A  LF  M +G          D ITY+ + D   K
Sbjct: 494 LVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPV------DVITYNILFDAFSK 545



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 6/111 (5%)

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  LF  L     +P+VV +N+++      G + + KHY T   L K++   G+ P + T
Sbjct: 62  AVALFTRLITMHPLPSVVEFNMIL------GSIVKMKHYPTAISLSKQMGLRGITPSIVT 115

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            +ILINC+C +G +   F + G +L   +  +A+T T+++K L IN   R+
Sbjct: 116 LSILINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRK 166


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 124/401 (30%), Positives = 189/401 (47%), Gaps = 63/401 (15%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           +ER +S     I  I  ++A+ +F  M   RP RP +  F+ LF  +A+TK YD VL L 
Sbjct: 41  RERLRSG----IVDIKEDDAVDLFQEMTRSRP-RPRLIDFSRLFSVVARTKQYDLVLDLC 95

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           K++ L G+  + YT +I+INC C+  ++S  F  +G+I++  + PD VTF++LI  LC E
Sbjct: 96  KQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLE 155

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE------ 227
            R+ EA  L  ++   G +  + T N L+NGLC  G    A+ L + M     +      
Sbjct: 156 GRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTY 215

Query: 228 ---FGVVCEP--------------------DAITYSTIIDGLCKEAGSAN-FLGFSCMAS 263
                V+C+                     DA+ YS IIDGLCK+    N F  F+ M  
Sbjct: 216 GPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 275

Query: 264 FSALNKMAFYFPLVRVQCLC----------------------LNFLCLIDGLCKISKLKI 301
                 +  Y  L+R  C                        + F  LID   K  KL+ 
Sbjct: 276 KGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 335

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A EL + + + G+ P+ VTY  LI G C + Q+D+  H      +   + S G  P++ T
Sbjct: 336 AEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANH------MLDLMVSKGCGPNIRT 389

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +NILIN +CK   +  G  +F ++       D VT+ +LI+
Sbjct: 390 FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQ 430



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 141/321 (43%), Gaps = 24/321 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +F+ L  C  K         L K +   G+ PD  TY  LI+ FCK  ++  
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +L  ++     P+  TF  LI   C  + I +   LF K+ + G   D  TYNTLI 
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQ 430

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C  G   VA  LF+EM +          PD ++Y  ++DGLC        L       
Sbjct: 431 GFCELGKLEVAKELFQEMVSRR------VRPDIVSYKILLDGLCDNGEPEKALEI----- 479

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F  + K      +         +  +I G+C  SK+  A +LF SLP  G+ P+V TYNI
Sbjct: 480 FEKIEKSKMELDIG-------IYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNI 532

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +I GLC  G + E        LLF+++   G  P+  TYNILI      G  +    +  
Sbjct: 533 MIGGLCKKGSLSEAD------LLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIE 586

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            I    F+ DA T   ++ +L
Sbjct: 587 EIKRCGFSVDASTVKMVVDML 607



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 155/351 (44%), Gaps = 47/351 (13%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R  +     ++I+   L K    D   +LF  + + G   D   Y  LI  FC  GR
Sbjct: 238 MEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGR 297

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
              G  +L  +++   TPD V F++LI     E ++ EA  L  ++   G   D  TY +
Sbjct: 298 WDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTS 357

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+G C+      A ++ + M +        C P+  T++ +I+G CK    AN +    
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKG------CGPNIRTFNILINGYCK----ANLID--- 404

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                   KM+    L  V    + +  LI G C++ KL++A+ELFQ +    + P++V+
Sbjct: 405 -DGLELFRKMS----LRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVS 459

Query: 321 YNILIRGLCNDGQ-----------------------------MDETKHYETVFLLFKRLN 351
           Y IL+ GLC++G+                             M      +  + LF  L 
Sbjct: 460 YKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLP 519

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             G+ PD+ TYNI+I   CK G +S   ++F ++     +P+  T+  LI+
Sbjct: 520 LKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIR 570



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +I+  C+  KL +A      + + G  P+ VT++ LI GLC +G++ E         L  
Sbjct: 113 MINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEA------LELVD 166

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           R+   G  P L T N L+N  C  G+VS   ++  R++ + F P+ VT+  ++K++
Sbjct: 167 RMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVM 222



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L ++  +P V ++NI+ G L K         LF+++   G  P+  TYNILI      G 
Sbjct: 518 LPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGD 577

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
            +    ++  I R  F+ DA T   ++ D+ ++ R+ ++
Sbjct: 578 ATKSAKLIEEIKRCGFSVDAST-VKMVVDMLSDGRLKKS 615



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           ++F  L   + +  +  +  +L + +   G+  N+ T +I+I   C        +     
Sbjct: 73  IDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCR------CRKLSLA 126

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           F    ++   G  PD  T++ LIN  C  GRVS    +  R++     P  +T  +L+  
Sbjct: 127 FSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNG 186

Query: 404 LEINS 408
           L +N 
Sbjct: 187 LCLNG 191


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 183/356 (51%), Gaps = 34/356 (9%)

Query: 55  ERCKSSGEGDITSITPN---------EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKH 105
           ER  +S  GD   I  N         +A+ +F  M+  RP  P +  FN L   +AK   
Sbjct: 40  ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPF-PSIVEFNKLLSAVAKMNK 98

Query: 106 YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           ++ V+SL +++   G+  D YTY+I INCFC+  ++S    VL ++++  + PD VT +S
Sbjct: 99  FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
           L+   C   RI +A AL  ++   G + D FT+ TLI+GL        A+ L ++M    
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN 285
                 C+PD +TY T+++GLCK  G  +        + + LNKM       R++   + 
Sbjct: 219 ------CQPDLVTYGTVVNGLCKR-GDIDL-------ALNLLNKM----EAARIKANVVI 260

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  +ID LCK   +++A +LF  +   G+ PNVVTYN LI  LCN G+  +     +  +
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLS-NM 319

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L K++N     P++ T+N LI+ F K G++     +   ++     PD +T+  LI
Sbjct: 320 LEKKIN-----PNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLI 370



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 147/351 (41%), Gaps = 62/351 (17%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +  V  FN +   L K +H +  + LF  +   G+ P+  TYN LINC C  GR S    
Sbjct: 255 KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASR 314

Query: 147 VLGRILRSCFTPDAVTFTSLI-----------------------------------KDLC 171
           +L  +L     P+ VTF +LI                                      C
Sbjct: 315 LLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFC 374

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
             +R+ EA  +F  +    C  ++ TYNTLING C+       + LF EM+    + G+V
Sbjct: 375 MHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMS----QRGLV 430

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
              + +TY+TII G         F    C ++     +M       RV    + +  L+ 
Sbjct: 431 --GNTVTYTTIIQGF--------FQAGDCDSAQMVFKQMVSN----RVPTDIMTYSILLH 476

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GLC   KL  A  +F+ L ++ +  N+  YN +I G+C  G++ E          +    
Sbjct: 477 GLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEA---------WDLFC 527

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           S  + PD+ TYN +I+  C    +     +F ++      P++ T+ +LI+
Sbjct: 528 SLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIR 578



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 128/309 (41%), Gaps = 29/309 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + + M+  R   P   ++N+L          D    +FK +      P+  TYN L
Sbjct: 346 EAEKLHEEMIQ-RSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTL 404

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN FCK  RV  G  +   + +     + VT+T++I+          A  +F ++     
Sbjct: 405 INGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRV 464

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ TY+ L++GLC  G    AL +F+ +     E  +        Y+T+I+G+CK   
Sbjct: 465 PTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNI------FIYNTMIEGMCKAGK 518

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                   C  S           P V      + +  +I GLC    L+ A +LF+ +  
Sbjct: 519 VGEAWDLFCSLSIK---------PDV------VTYNTMISGLCSKRLLQEADDLFRKMKE 563

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +PN  TYN LIR    D   D     E    L K + S+G   D  T +++ N    
Sbjct: 564 DGTLPNSGTYNTLIRANLRD--CDRAASAE----LIKEMRSSGFVGDASTISLVTNMLHD 617

Query: 372 IGRVSSGFV 380
            GR+   F+
Sbjct: 618 -GRLDKSFL 625



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 118/275 (42%), Gaps = 24/275 (8%)

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           IL N    + +V     + G +++S   P  V F  L+  +   ++     +L  +++  
Sbjct: 53  ILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   D++TY+  IN  CR     +AL +  +M     + G   EPD +T S++++G C  
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMM----KLGY--EPDIVTLSSLLNGYCHS 166

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              ++      +A    + +M  Y P          F  LI GL   +K   A  L   +
Sbjct: 167 KRISD-----AVALVDQMVEMG-YKPDT------FTFTTLIHGLFLHNKASEAVALVDQM 214

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            + G  P++VTY  ++ GLC  G +D          L  ++ +  +  ++  +N +I+  
Sbjct: 215 VQRGCQPDLVTYGTVVNGLCKRGDID------LALNLLNKMEAARIKANVVIFNTIIDSL 268

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           CK   V     +F  +      P+ VT+ SLI  L
Sbjct: 269 CKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCL 303



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 6/152 (3%)

Query: 71  NEALCVFDYMLNMR-PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           + A  VF  M++ R P+   + +++IL   L      DT L +FK L  + +  + + YN
Sbjct: 450 DSAQMVFKQMVSNRVPT--DIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYN 507

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +I   CK G+V   + +   +      PD VT+ ++I  LC++  + EA  LF K++  
Sbjct: 508 TMIEGMCKAGKVGEAWDLFCSL---SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKED 564

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           G   +  TYNTLI    R      +  L +EM
Sbjct: 565 GTLPNSGTYNTLIRANLRDCDRAASAELIKEM 596


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 167/323 (51%), Gaps = 25/323 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  RP  P +  F+ +   +AK+K+YD V+SLF  + + G+  D Y+YNI+INC C+  
Sbjct: 1   MIQSRP-LPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCS 59

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           R      V+G++++  + PD VT +SLI   C  +R+ +A  L +K+   G   DV  YN
Sbjct: 60  RFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYN 119

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           T+I+G C+ G    A+ LF+ M       GV    DA+TY++++ GLC            
Sbjct: 120 TIIDGSCKIGLVNDAVELFDRMERD----GV--RADAVTYNSLVAGLC------------ 161

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
           C   +S   ++     +  +    + F  +ID   K  K   A +L++ + R  + P+V 
Sbjct: 162 CSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVF 221

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TYN LI GLC  G++DE K       +   + + G  PD+ TYN LIN FCK  RV  G 
Sbjct: 222 TYNSLINGLCMHGRVDEAKQ------MLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGT 275

Query: 380 VIFGRILPSCFTPDAVTFTSLIK 402
            +F  +       D +T+ ++I+
Sbjct: 276 KLFREMAQRGLVGDTITYNTIIQ 298



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 155/322 (48%), Gaps = 28/322 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A+ +FD M      R    ++N L   L  +  +     L + + +  + P+  T+  
Sbjct: 132 NDAVELFDRM-ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTA 190

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+ F K G+ S    +   + R C  PD  T+ SLI  LC   R+ EA  +   +   G
Sbjct: 191 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 250

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  DV TYNTLING C++        LF EMA    + G+V   D ITY+TII G   +A
Sbjct: 251 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMA----QRGLV--GDTITYNTIIQGYF-QA 303

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G  +    +    FS ++      P +R       +  L+ GLC   +++ A  LF+++ 
Sbjct: 304 GRPD----AAQEIFSRMDSR----PNIR------TYSILLYGLCMNWRVEKALVLFENMQ 349

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           ++ +  ++ TYNI+I G+C  G +      E  + LF+ L+  GL PD+ +Y  +I+ FC
Sbjct: 350 KSEIELDITTYNIVIHGMCKIGNV------EDAWDLFRSLSCKGLKPDVVSYTTMISGFC 403

Query: 371 KIGRVSSGFVIFGRILPSCFTP 392
           +  +     +++ ++      P
Sbjct: 404 RKRQWDKSDLLYRKMQEDGLLP 425



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 59/246 (23%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P  V F+ ++  +          +LF  + V G   D+++YN +IN LCR    ++AL++
Sbjct: 8   PSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSV 67

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
             +M     +FG   EPD +T S+                                    
Sbjct: 68  VGKMM----KFGY--EPDVVTVSS------------------------------------ 85

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                      LI+G C+ +++  A +L   +   G  P+VV YN +I G C  G +++ 
Sbjct: 86  -----------LINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDA 134

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   LF R+   G+  D  TYN L+   C  GR S    +   ++     P+ +TF
Sbjct: 135 VE------LFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITF 188

Query: 398 TSLIKI 403
           T++I +
Sbjct: 189 TAVIDV 194


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 173/338 (51%), Gaps = 25/338 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           +  I  N+A+ +F  M+  RP  P +  FN L   + K K YD V+SL K++ + G+  D
Sbjct: 61  LRDIKLNDAIDLFSDMVKSRPF-PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRND 119

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            YT+NI+INCFC   +VS    +LG++L+  + PD VT  SL+   C  +R+ +A +L  
Sbjct: 120 LYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 179

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           K+   G + D+  YN +I+ LC+T     A + F+E+            P+ +TY+ +++
Sbjct: 180 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG------IRPNVVTYTALVN 233

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           GLC              + +S   ++       ++    + +  L+D   K  K+  A+E
Sbjct: 234 GLCNS------------SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKE 281

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           LF+ + R  + P++VTY+ L+ GLC   ++DE         +F  + S G   D+ +YN 
Sbjct: 282 LFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQ------MFDLMVSKGCLADVVSYNT 335

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           LIN FCK  RV  G  +F  +       + VT+ +LI+
Sbjct: 336 LINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQ 373



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 147/392 (37%), Gaps = 103/392 (26%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ + D M+ +   +P + ++N +   L KTK  +     FK +   G+ P+  TY  
Sbjct: 172 SDAVSLVDKMVEI-GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230

Query: 131 LINCFCKMGRVSHG-------------------------FVVLGRIL----------RSC 155
           L+N  C   R S                           FV  G++L          R  
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF------------------- 196
             PD VT++SL+  LC   RI EA  +F  +   GC  DV                    
Sbjct: 291 IDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350

Query: 197 ----------------TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
                           TYNTLI G  + G    A   F +M      FG+   PD  TY+
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM----DFFGI--SPDIWTYN 404

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
            ++ GLC        L       F  + K      +V        +  +I G+CK  K++
Sbjct: 405 ILLGGLCDNGELEKAL-----VIFEDMQKREMDLDIV-------TYTTVIRGMCKTGKVE 452

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A  LF SL   GL P++VTY  ++ GLC  G + E +       L+ ++   GL  +  
Sbjct: 453 EAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA------LYTKMKQEGLMKN-- 504

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
                 +C    G ++    +  ++L   + P
Sbjct: 505 ------DCTLSDGDITLSAELIKKMLSCGYAP 530


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/358 (31%), Positives = 178/358 (49%), Gaps = 44/358 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ ML M  + PP+  F  + G LAK KHY T +SL K++ + G+ P+  T NI
Sbjct: 34  DDAISQFNGMLLMHHT-PPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNI 92

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC +G++S  F VLG+IL+  + P+ +T T+L+K LC +  + ++     K+   G
Sbjct: 93  LINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQG 152

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +++  +Y TL+NGLC+ G T  A+     + + +    VV       Y+TIIDGLCK+ 
Sbjct: 153 FQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVV------MYNTIIDGLCKDK 206

Query: 251 ----------------------GSANFLGFSCMA-----SFSALNKMAFYFPLVRVQCLC 283
                                      +G  C+A     +FS LN+M     L  +    
Sbjct: 207 LVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMI----LKNINPNV 262

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             +  LID LCK  K+K A+ L   +   G   +VVTY  L+ G C +  +D+       
Sbjct: 263 YTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKAT----- 317

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             LF ++   G+ P+ YTY  LI+  CK GR+     +F  +L      D  T+  +I
Sbjct: 318 -ALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMI 374



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 118/252 (46%), Gaps = 24/252 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  +N +   L K K  +     +  +N  G+FP+  TY  LI  FC  G+++  F +L 
Sbjct: 192 VVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLN 251

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P+  T+  LI  LC E ++ EA  L  ++   G   DV TY +L++G C+  
Sbjct: 252 EMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQ 311

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
           +   A  LF +M     E+G+  +P+  TY+ +IDGLCK                  L  
Sbjct: 312 NLDKATALFMKMK----EWGI--QPNKYTYTALIDGLCKGG---------------RLKD 350

Query: 270 MAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
               F  + V+  C++   +  +I GLCK   L  A  +   +   G +PNVVT+ I+IR
Sbjct: 351 AQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIR 410

Query: 327 GLCNDGQMDETK 338
            L    + D+ +
Sbjct: 411 SLFKKDENDKAE 422



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 133/300 (44%), Gaps = 43/300 (14%)

Query: 96  LFGCLAKTKH-YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS 154
           L G + K+ H +D V++        G   ++ +Y  L+N  CK+G        L  I  S
Sbjct: 134 LKGEVQKSVHFHDKVVA-------QGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDS 186

Query: 155 CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA 214
               + V + ++I  LC +  + EA   ++++   G   +V TY TLI G C  G    A
Sbjct: 187 STGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGA 246

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG---SANFLG-------------- 257
            +L  EM   N        P+  TY+ +ID LCKE     + N L               
Sbjct: 247 FSLLNEMILKN------INPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTY 300

Query: 258 FSCMASF---SALNKMAFYFPLVR---VQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            S +  F     L+K    F  ++   +Q     +  LIDGLCK  +LK A++LFQ L  
Sbjct: 301 TSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLV 360

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G   +V TYN++I GLC +G +DE         +  ++   G  P++ T+ I+I    K
Sbjct: 361 KGCCIDVCTYNVMIGGLCKEGMLDEA------LAIKSKMEDNGCIPNVVTFEIIIRSLFK 414



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 112/251 (44%), Gaps = 30/251 (11%)

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
           TP  V F  ++  L        A +L  ++ V G E ++ T N LIN  C  G    + +
Sbjct: 49  TPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFS 108

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           +  ++        +  +P+ IT +T++ GLC +                 + K   +   
Sbjct: 109 VLGKI------LKLGYQPNTITLTTLMKGLCLKG---------------EVQKSVHFHDK 147

Query: 277 VRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
           V  Q   +N   +  L++GLCKI + + A +  + +  +    NVV YN +I GLC D  
Sbjct: 148 VVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKL 207

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           ++E   +      +  +N+ G+FP++ TY  LI  FC  G+++  F +   ++     P+
Sbjct: 208 VNEAYDF------YSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPN 261

Query: 394 AVTFTSLIKIL 404
             T+  LI  L
Sbjct: 262 VYTYAILIDAL 272



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 6/167 (3%)

Query: 83  MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142
           ++   P V ++ IL   L K        +L   ++  G   D  TY  L++ FCK   + 
Sbjct: 255 LKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLD 314

Query: 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
               +  ++      P+  T+T+LI  LC   R+ +A  LF  L V GC +DV TYN +I
Sbjct: 315 KATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMI 374

Query: 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            GLC+ G    AL +  +M + NG     C P+ +T+  II  L K+
Sbjct: 375 GGLCKEGMLDEALAIKSKMED-NG-----CIPNVVTFEIIIRSLFKK 415



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 65/141 (46%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R     V ++  L     K ++ D   +LF ++   G+ P++YTY  LI+  CK GR
Sbjct: 288 MHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGR 347

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     +   +L      D  T+  +I  LC E  + EA A+ +K+   GC  +V T+  
Sbjct: 348 LKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEI 407

Query: 201 LINGLCRTGHTIVALNLFEEM 221
           +I  L +      A  L  EM
Sbjct: 408 IIRSLFKKDENDKAEKLLHEM 428


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 172/354 (48%), Gaps = 35/354 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N  +  F+ +L+ +   PP+  FN +   L K KH+ T LSL +++ L G+  D +T+NI
Sbjct: 51  NNLISSFNSLLHHKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNI 110

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCF ++G  S  F V G+IL+  F P+A+TF +LIK LC +  I +A     K+   G
Sbjct: 111 LINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQG 170

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
             LD  +Y TLINGLC+ G    AL L + +       G + +P+A+ Y+ IID +CK  
Sbjct: 171 FHLDQVSYGTLINGLCKVGRITAALQLLKRVD------GKLVQPNAVMYNMIIDNMCKAK 224

Query: 249 -------------------EAGSANFL--GFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
                              +  + N L  GF  M        +     L  +      F 
Sbjct: 225 LVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFS 284

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L+D  CK  K+K A+ +     +  ++ +VVTYN L+ G C   ++++ K       +F
Sbjct: 285 ILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKD------IF 338

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             + S G+  ++ +Y  +IN  CKI  V     +F  +      P+ VT+ SLI
Sbjct: 339 DSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLI 392



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 161/336 (47%), Gaps = 35/336 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFG-CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           N+A  ++  M+  R S    T  ++++G C+         + L  ++ L  + P  YT++
Sbjct: 227 NDAFDLYSQMVAKRISPDDFTCNSLIYGFCI--MGQLKEAVGLLHKMILENINPRMYTFS 284

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           IL++ FCK G+V    ++LG  ++     D VT+ SL+   C    I +A  +F  +   
Sbjct: 285 ILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASR 344

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE---PDAITYSTIIDGL 246
           G   +V +Y T+INGLC+      A+NLFEEM          C    P+ +TY+++IDGL
Sbjct: 345 GVIANVQSYTTMINGLCKIKMVDEAVNLFEEMR---------CRKIIPNVVTYNSLIDGL 395

Query: 247 CKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
            K       LG  SC+             P +      + +  ++D LCK   +  A  L
Sbjct: 396 GK-------LGKISCVLKLVDEMHDRGQPPNI------ITYNSILDALCKNHHVDKAIAL 442

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
             +L   G+ P++ TY +LI+GLC  G++++ +       +F+ L   G   D+YTY ++
Sbjct: 443 LTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQK------VFEDLLVKGYNLDVYTYTVM 496

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           I  FC  G   +   +  ++  +   P+A T+  +I
Sbjct: 497 IQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVI 532



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 148/319 (46%), Gaps = 30/319 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P    +N++   + K K  +    L+ ++    + PD +T N LI  FC MG++     
Sbjct: 207 QPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVG 266

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L +++     P   TF+ L+   C E ++ EA  +          LDV TYN+L++G C
Sbjct: 267 LLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYC 326

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A ++F+ MA+     GV+   +  +Y+T+I+GLCK                  
Sbjct: 327 LVKEINKAKDIFDSMASR----GVIA--NVQSYTTMINGLCK---------------IKM 365

Query: 267 LNKMAFYFPLVRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +++    F  +R + +  N +    LIDGL K+ K+    +L   +   G  PN++TYN 
Sbjct: 366 VDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNS 425

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           ++  LC      +  H +    L   L   G+ PD+YTY +LI   C+ G++     +F 
Sbjct: 426 ILDALC------KNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFE 479

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +L   +  D  T+T +I+
Sbjct: 480 DLLVKGYNLDVYTYTVMIQ 498



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 62/138 (44%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P + ++N +   L K  H D  ++L   L   G+ PD YTY +LI   C+ G++  
Sbjct: 414 RGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLED 473

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              V   +L   +  D  T+T +I+  C +     A AL +K+   GC  +  TY  +I 
Sbjct: 474 AQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVIL 533

Query: 204 GLCRTGHTIVALNLFEEM 221
            L       +A  L  EM
Sbjct: 534 SLFEKDENDMAEKLLREM 551



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 6/97 (6%)

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P ++ +N ++  L       + KH+ T   L +++   G+  D +T+NILINCF ++G  
Sbjct: 68  PPIIQFNKILSSLV------KAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLN 121

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           S  F +FG+IL   F P+A+TF +LIK L +     Q
Sbjct: 122 SLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQ 158


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 171/347 (49%), Gaps = 32/347 (9%)

Query: 68  ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKH--YDTVLSLFKRLNLTGLFPDR 125
           +  ++A+  F  ML M PS P +  FN + G L K+ +  Y   +SL+ RL L  + P  
Sbjct: 25  VDVHDAISSFYRMLRMNPS-PSIIEFNKILGSLVKSNNNNYPIAISLYHRLQLNAITPSI 83

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            T+N +INC+C +G +   F VL +IL+  + PD +T T+LIK LC   ++ EA      
Sbjct: 84  VTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDH 143

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +   G  L+  +Y  LINGLC+ G T  AL +  ++       G +   + + YSTIID 
Sbjct: 144 VIARGFRLNEVSYGILINGLCKMGETRAALQVLRKID------GKLVNTNVVMYSTIIDS 197

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           LCKE             ++   ++M     + +V    + F  LI G C + + K A  L
Sbjct: 198 LCKEK--------LVTEAYELYSQMI----VKKVSPDVVTFSALIYGFCMVGQFKEAFGL 245

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL-----------LFKRLNSTG 354
           F  +    + P+V T+NIL+  LC +G   ETK+   V +           +F  +    
Sbjct: 246 FHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRR 305

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + PD+++Y I+I   CKI  V     +F  +     TPD VT++SLI
Sbjct: 306 VTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLI 352



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 156/410 (38%), Gaps = 89/410 (21%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYT----------- 127
           + L +    P + +FN +  C       D   S+  ++   G  PD  T           
Sbjct: 72  HRLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLN 131

Query: 128 ------------------------YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTF 163
                                   Y ILIN  CKMG       VL +I       + V +
Sbjct: 132 GKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMY 191

Query: 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           +++I  LC E  + EA  L++++ V     DV T++ LI G C  G    A  LF EM  
Sbjct: 192 STIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVL 251

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSA---NFLGFSCMASFSALNKMAFYF------ 274
            N        PD  T++ ++D LCKE  +    N L    M   + +NK    F      
Sbjct: 252 TN------INPDVCTFNILVDALCKEGSTKETKNVLAV-MMKEVNQVNKAKHVFNIIGKR 304

Query: 275 ---PLVRVQCLCLNFLC-----------------------------LIDGLCKISKLKIA 302
              P V    + +  LC                             LIDGLCK  ++  A
Sbjct: 305 RVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHA 364

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            EL   +   G   +V+TY   +  LC + Q+D+         L K++   G+ P++ TY
Sbjct: 365 WELLDQMHARGQPADVITYTSFLHALCKNHQVDKA------VALVKKIKDQGIQPNINTY 418

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           NILI+  CK GR  +  VIF  +L   +     T+  +I  L +   F +
Sbjct: 419 NILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDE 468



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 144/323 (44%), Gaps = 54/323 (16%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++  M+ ++   P V +F+ L         +     LF  + LT + PD  T+NIL
Sbjct: 206 EAYELYSQMI-VKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNIL 264

Query: 132 INCFCKMG--------------------RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           ++  CK G                    +  H F ++G+      TPD  ++T +IK LC
Sbjct: 265 VDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGK---RRVTPDVHSYTIIIKRLC 321

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
               + EA +LF ++R  G   D  TY++LI+GLC++     A  L ++M +  G+    
Sbjct: 322 KIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQM-HARGQ---- 376

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLC 288
              D ITY++ +  LCK                  ++K       ++ Q +  N   +  
Sbjct: 377 -PADVITYTSFLHALCKN---------------HQVDKAVALVKKIKDQGIQPNINTYNI 420

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LIDGLCK  + + A+ +FQ L   G    V TYNI+I GLC +G  DE         L +
Sbjct: 421 LIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEA------MTLLE 474

Query: 349 RLNSTGLFPDLYTYNILINCFCK 371
           ++   G  PD+ TY  +I    K
Sbjct: 475 KMEDNGCTPDVVTYETIIRALFK 497



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 97/180 (53%), Gaps = 7/180 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  VF+ ++  R   P V S+ I+   L K K  D  LSLF  +   G+ PD+ TY+ 
Sbjct: 292 NKAKHVFN-IIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSS 350

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK  R+SH + +L ++       D +T+TS +  LC   ++ +A AL  K++  G
Sbjct: 351 LIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQG 410

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + ++ TYN LI+GLC+ G    A  +F+++     +  V       TY+ +I+GLC E 
Sbjct: 411 IQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTV------WTYNIMINGLCLEG 464



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 78/183 (42%), Gaps = 9/183 (4%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNEALC-------VFDYMLNMRPSRPP--VTSFNILFG 98
           +L  F + RCK      +T  +  + LC        ++ +  M     P  V ++     
Sbjct: 329 ALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLH 388

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
            L K    D  ++L K++   G+ P+  TYNILI+  CK GR  +  V+   +L   +  
Sbjct: 389 ALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKV 448

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
              T+  +I  LC E    EA  L  K+   GC  DV TY T+I  L +      A  L 
Sbjct: 449 TVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKNDENHKAEKLL 508

Query: 219 EEM 221
            EM
Sbjct: 509 REM 511



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  + R    P+++ +N ++  L          +Y     L+ RL    + P + T+N +
Sbjct: 34  FYRMLRMNPSPSIIEFNKILGSLVKSN----NNNYPIAISLYHRLQLNAITPSIVTFNTV 89

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           INC+C +G +   F +  +IL   + PD +T T+LIK L +N
Sbjct: 90  INCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLN 131


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/394 (30%), Positives = 183/394 (46%), Gaps = 75/394 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F  M+  RP  P +  FN L   +AK   +D V+SL +R+    +  D Y+YNI
Sbjct: 46  DDAVDLFGEMVQSRP-LPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 104

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF- 189
           LINCFC+  ++     VLG++++  + PD VT +SL+   C   RI EA AL  ++ V  
Sbjct: 105 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 164

Query: 190 ----------------------------------GCELDVFTYNTLINGLCRTGHTIVAL 215
                                             GC+ D+FTY T++NGLC+ G   +AL
Sbjct: 165 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 224

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYF 274
           +L ++M  G        E D + Y+TIID LC      + L  F+ M +      +  Y 
Sbjct: 225 SLLKKMEKGK------IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 278

Query: 275 PLVRVQCLC------------------------LNFLCLIDGLCKISKLKIARELFQSLP 310
            L+R  CLC                        + F  LID   K  KL  A +L+  + 
Sbjct: 279 SLIR--CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 336

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           +  + P++ TY+ LI G C   ++DE KH      +F+ + S   FP++ TYN LI  FC
Sbjct: 337 KRSIDPDIFTYSSLINGFCMHDRLDEAKH------MFELMISKDCFPNVVTYNTLIKGFC 390

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K  RV  G  +F  +       + VT+ +LI+ L
Sbjct: 391 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 424



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 165/331 (49%), Gaps = 31/331 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  +  +   L   K+ +  L+LF  ++  G+ P+  TYN LI C C  GR S    +L 
Sbjct: 239 VVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLS 298

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P+ VTF++LI     E +++EA  L+ ++     + D+FTY++LING C   
Sbjct: 299 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 358

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A ++FE M + +      C P+ +TY+T+I G CK            M  F  +++
Sbjct: 359 RLDEAKHMFELMISKD------CFPNVVTYNTLIKGFCKAKRVE-----EGMELFREMSQ 407

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                  V        +  LI GL +     +A+++F+ +   G+ P+++TY+IL+ GLC
Sbjct: 408 RGLVGNTV-------TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLC 460

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
             G++      E   ++F+ L  + + PD+YTYNI+I   CK G+V  G+ +F  +    
Sbjct: 461 KYGKL------EKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 514

Query: 390 FTPDAVTFTSLIKIL-------EINSFFRQV 413
             P+ + +T++I          E ++ FR++
Sbjct: 515 VKPNVIIYTTMISGFCRKGLKEEADALFREM 545



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 160/332 (48%), Gaps = 25/332 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+AL +F  M N +  RP V ++N L  CL     +     L   +    + P+  T++ 
Sbjct: 256 NDALNLFTEMDN-KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 314

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F K G++     +   +++    PD  T++SLI   C   R+ EA  +F  +    
Sbjct: 315 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 374

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V TYNTLI G C+       + LF EM+    + G+V   + +TY+T+I GL    
Sbjct: 375 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMS----QRGLV--GNTVTYNTLIQGL---- 424

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
               F    C  +     KM        V    + +  L+DGLCK  KL+ A  +F+ L 
Sbjct: 425 ----FQAGDCDMAQKIFKKMVS----DGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 476

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           ++ + P++ TYNI+I G+C  G++++       + LF  L+  G+ P++  Y  +I+ FC
Sbjct: 477 KSKMEPDIYTYNIMIEGMCKAGKVEDG------WDLFCSLSLKGVKPNVIIYTTMISGFC 530

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + G       +F  +      P++ T+ +LI+
Sbjct: 531 RKGLKEEADALFREMKEDGTLPNSGTYNTLIR 562



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 150/328 (45%), Gaps = 36/328 (10%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC---KMGR 140
           R   P V +F+ L     K         L+  +    + PD +TY+ LIN FC   ++  
Sbjct: 303 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 362

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
             H F ++  I + CF P+ VT+ +LIK  C   R+ E   LF ++   G   +  TYNT
Sbjct: 363 AKHMFELM--ISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 419

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI GL + G   +A  +F++M +     GV   PD ITYS ++DGLCK            
Sbjct: 420 LIQGLFQAGDCDMAQKIFKKMVSD----GV--PPDIITYSILLDGLCK------------ 461

Query: 261 MASFSALNKMAFYFPLV---RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
              +  L K    F  +   +++     +  +I+G+CK  K++   +LF SL   G+ PN
Sbjct: 462 ---YGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 518

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           V+ Y  +I G C  G  +E         LF+ +   G  P+  TYN LI    + G  ++
Sbjct: 519 VIIYTTMISGFCRKGLKEEADA------LFREMKEDGTLPNSGTYNTLIRARLRDGDKAA 572

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKILE 405
              +   +    F  DA T + +I +L 
Sbjct: 573 SAELIKEMRSCGFVGDASTISMVINMLH 600



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 134/309 (43%), Gaps = 26/309 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++D M+  R   P + +++ L          D    +F+ +     FP+  TYN L
Sbjct: 327 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 385

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  FCK  RV  G  +   + +     + VT+ +LI+ L        A  +F K+   G 
Sbjct: 386 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 445

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ TY+ L++GLC+ G    AL +FE +           EPD  TY+ +I+G+CK   
Sbjct: 446 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK------MEPDIYTYNIMIEGMCKAGK 499

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +     C  S   +       P V +      +  +I G C+    + A  LF+ +  
Sbjct: 500 VEDGWDLFCSLSLKGVK------PNVII------YTTMISGFCRKGLKEEADALFREMKE 547

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +PN  TYN LIR    DG  D+    E    L K + S G   D  T +++IN    
Sbjct: 548 DGTLPNSGTYNTLIRARLRDG--DKAASAE----LIKEMRSCGFVGDASTISMVINMLHD 601

Query: 372 IGRVSSGFV 380
            GR+   ++
Sbjct: 602 -GRLEKSYL 609



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 106/283 (37%), Gaps = 64/283 (22%)

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
           + ++ + N+L++      ++     + G +++S   P  V F  L+  +   ++     +
Sbjct: 31  YREKLSRNVLLDL-----KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVIS 85

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L  +++      D+++YN LIN  CR     +AL +  +M        +  EPD +T S+
Sbjct: 86  LGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKM------MKLGYEPDIVTLSS 139

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
                                                          L++G C   ++  
Sbjct: 140 -----------------------------------------------LLNGYCHGKRISE 152

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  L   +      PN VT+N LI GL    +  E         L  R+ + G  PDL+T
Sbjct: 153 AVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEA------VALIDRMVARGCQPDLFT 206

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           Y  ++N  CK G +     +  ++       D V +T++I  L
Sbjct: 207 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDAL 249


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/394 (30%), Positives = 183/394 (46%), Gaps = 75/394 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F  M+  RP  P +  FN L   +AK   +D V+SL +R+    +  D Y+YNI
Sbjct: 62  DDAVDLFGEMVQSRP-LPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF- 189
           LINCFC+  ++     VLG++++  + PD VT +SL+   C   RI EA AL  ++ V  
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180

Query: 190 ----------------------------------GCELDVFTYNTLINGLCRTGHTIVAL 215
                                             GC+ D+FTY T++NGLC+ G   +AL
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYF 274
           +L ++M  G        E D + Y+TIID LC      + L  F+ M +      +  Y 
Sbjct: 241 SLLKKMEKGK------IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 294

Query: 275 PLVRVQCLC------------------------LNFLCLIDGLCKISKLKIARELFQSLP 310
            L+R  CLC                        + F  LID   K  KL  A +L+  + 
Sbjct: 295 SLIR--CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           +  + P++ TY+ LI G C   ++DE KH      +F+ + S   FP++ TYN LI  FC
Sbjct: 353 KRSIDPDIFTYSSLINGFCMHDRLDEAKH------MFELMISKDCFPNVVTYNTLIKGFC 406

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K  RV  G  +F  +       + VT+ +LI+ L
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 167/335 (49%), Gaps = 39/335 (11%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  +  +   L   K+ +  L+LF  ++  G+ P+  TYN LI C C  GR S    +L 
Sbjct: 255 VVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLS 314

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P+ VTF++LI     E +++EA  L+ ++     + D+FTY++LING C   
Sbjct: 315 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 374

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMASFS 265
               A ++FE M + +      C P+ +TY+T+I G CK    E G         M  F 
Sbjct: 375 RLDEAKHMFELMISKD------CFPNVVTYNTLIKGFCKAKRVEEG---------MELFR 419

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            +++       V        +  LI GL +     +A+++F+ +   G+ P+++TY+IL+
Sbjct: 420 EMSQRGLVGNTV-------TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 472

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC  G++      E   ++F+ L  + + PD+YTYNI+I   CK G+V  G+ +F  +
Sbjct: 473 DGLCKYGKL------EKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526

Query: 386 LPSCFTPDAVTFTSLIKIL-------EINSFFRQV 413
                 P+ + +T++I          E ++ FR++
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 160/332 (48%), Gaps = 25/332 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+AL +F  M N +  RP V ++N L  CL     +     L   +    + P+  T++ 
Sbjct: 272 NDALNLFTEMDN-KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F K G++     +   +++    PD  T++SLI   C   R+ EA  +F  +    
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V TYNTLI G C+       + LF EM+    + G+V   + +TY+T+I GL    
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMS----QRGLV--GNTVTYNTLIQGL---- 440

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
               F    C  +     KM        V    + +  L+DGLCK  KL+ A  +F+ L 
Sbjct: 441 ----FQAGDCDMAQKIFKKMVSD----GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 492

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           ++ + P++ TYNI+I G+C  G++++       + LF  L+  G+ P++  Y  +I+ FC
Sbjct: 493 KSKMEPDIYTYNIMIEGMCKAGKVEDG------WDLFCSLSLKGVKPNVIIYTTMISGFC 546

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + G       +F  +      P++ T+ +LI+
Sbjct: 547 RKGLKEEADALFREMKEDGTLPNSGTYNTLIR 578



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 150/328 (45%), Gaps = 36/328 (10%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC---KMGR 140
           R   P V +F+ L     K         L+  +    + PD +TY+ LIN FC   ++  
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
             H F ++  I + CF P+ VT+ +LIK  C   R+ E   LF ++   G   +  TYNT
Sbjct: 379 AKHMFELM--ISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 435

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI GL + G   +A  +F++M +     GV   PD ITYS ++DGLCK            
Sbjct: 436 LIQGLFQAGDCDMAQKIFKKMVSD----GV--PPDIITYSILLDGLCK------------ 477

Query: 261 MASFSALNKMAFYFPLV---RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
              +  L K    F  +   +++     +  +I+G+CK  K++   +LF SL   G+ PN
Sbjct: 478 ---YGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 534

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           V+ Y  +I G C  G  +E         LF+ +   G  P+  TYN LI    + G  ++
Sbjct: 535 VIIYTTMISGFCRKGLKEEADA------LFREMKEDGTLPNSGTYNTLIRARLRDGDKAA 588

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKILE 405
              +   +    F  DA T + +I +L 
Sbjct: 589 SAELIKEMRSCGFVGDASTISMVINMLH 616



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 134/309 (43%), Gaps = 26/309 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++D M+  R   P + +++ L          D    +F+ +     FP+  TYN L
Sbjct: 343 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  FCK  RV  G  +   + +     + VT+ +LI+ L        A  +F K+   G 
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ TY+ L++GLC+ G    AL +FE +           EPD  TY+ +I+G+CK   
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK------MEPDIYTYNIMIEGMCKAGK 515

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +     C  S   +       P V +      +  +I G C+    + A  LF+ +  
Sbjct: 516 VEDGWDLFCSLSLKGVK------PNVII------YTTMISGFCRKGLKEEADALFREMKE 563

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +PN  TYN LIR    DG  D+    E    L K + S G   D  T +++IN    
Sbjct: 564 DGTLPNSGTYNTLIRARLRDG--DKAASAE----LIKEMRSCGFVGDASTISMVINMLHD 617

Query: 372 IGRVSSGFV 380
            GR+   ++
Sbjct: 618 -GRLEKSYL 625



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 107/283 (37%), Gaps = 64/283 (22%)

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
           + ++ + N+L++      ++     + G +++S   P  V F  L+  +   ++     +
Sbjct: 47  YREKLSRNVLLDL-----KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVIS 101

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L  +++      D+++YN LIN  CR     +AL +  +M     + G   EPD +T S+
Sbjct: 102 LGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM----KLGY--EPDIVTLSS 155

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
                                                          L++G C   ++  
Sbjct: 156 -----------------------------------------------LLNGYCHGKRISE 168

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  L   +      PN VT+N LI GL    +  E         L  R+ + G  PDL+T
Sbjct: 169 AVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEA------VALIDRMVARGCQPDLFT 222

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           Y  ++N  CK G +     +  ++       D V +T++I  L
Sbjct: 223 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDAL 265


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 178/381 (46%), Gaps = 43/381 (11%)

Query: 46  RASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK- 104
           RAS   +L      S + D+     N  +  F  ML MRP+ P +  FN + G + K   
Sbjct: 19  RASFCHYLHPFIPKSNDFDV-----NNDVSSFHRMLRMRPT-PSIVEFNKILGSIVKANN 72

Query: 105 -HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTF 163
            HY T +SL  +L L G+ P   T+NIL+NC+C +G ++  F +  +IL+  + P  +TF
Sbjct: 73  NHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITF 132

Query: 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
            +LI  +C   ++ EA      +   G  LD  +Y TLINGLC+ G T  AL + +++  
Sbjct: 133 NTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIE- 191

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSAN-----------------------FLGFSC 260
                G +   D + Y+ II+ LCK+   ++                        LGF  
Sbjct: 192 -----GKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCV 246

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           +        +     L  +      F  L+D LCK   +  A+ +   + + G++P+VVT
Sbjct: 247 VGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVT 306

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+ L+ G C   ++++ KH      +F  ++  G+ P  ++YNI+IN   KI  V     
Sbjct: 307 YSSLMDGYCLVNEVNKAKH------VFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALS 360

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +F  +      PD VT+ SLI
Sbjct: 361 LFKEMCCKGIAPDTVTYNSLI 381



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 165/342 (48%), Gaps = 43/342 (12%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  ++  M+  R S P V +FN L               LF  + L  + PD YT++IL
Sbjct: 217 DAYQLYSEMITKRIS-PDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSIL 275

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G ++    +L  +++    PD VT++SL+   C  + + +A  +F+ +   G 
Sbjct: 276 VDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGV 335

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE---PDAITYSTIIDGLCK 248
                +YN +INGL +      AL+LF+EM          C+   PD +TY+++IDGLCK
Sbjct: 336 APHAHSYNIMINGLGKIKMVDEALSLFKEMC---------CKGIAPDTVTYNSLIDGLCK 386

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIA 302
                             L ++++ + LV       +    L +  LID LCK   +  A
Sbjct: 387 ------------------LGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKA 428

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
             L + +   G+ P++ TYNILI GLC  G++   +       +F+ L   G   + +TY
Sbjct: 429 IALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQD------VFQDLLIKGYSVNAWTY 482

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           NI+IN  CK G  +   V+  ++  +   PDAVT+ ++I+ L
Sbjct: 483 NIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRAL 524



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 165/354 (46%), Gaps = 38/354 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL   D+++ +      V S+  L   L K       L + K++    +  D   YNI+
Sbjct: 147 EALHFHDHVIALGFHLDQV-SYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNII 205

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK   VS  + +   ++    +PD VTF SLI   C   ++ EA  LF ++ +   
Sbjct: 206 INSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNI 265

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KE 249
             DV+T++ L++ LC+ G+   A N+   M     + GV+  PD +TYS+++DG C   E
Sbjct: 266 NPDVYTFSILVDALCKDGNITRAKNMLAVMM----KQGVI--PDVVTYSSLMDGYCLVNE 319

Query: 250 AGSANFLGFSCMASFSALNKMAFY----------------FPLVRVQCL------CLNFL 287
              A  + FS M+          Y                  L +  C        + + 
Sbjct: 320 VNKAKHV-FSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYN 378

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LIDGLCK+ ++  A +L   +   G+  +++TYN LI  LC +  +D+         L 
Sbjct: 379 SLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKA------IALV 432

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K++   G+ P +YTYNILI+  CK GR+ +   +F  +L   ++ +A T+  +I
Sbjct: 433 KKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMI 486



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 99/180 (55%), Gaps = 7/180 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  VF  M  +  + P   S+NI+   L K K  D  LSLFK +   G+ PD  TYN 
Sbjct: 321 NKAKHVFSTMSRLGVA-PHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNS 379

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK+GR+S+ + ++  +  +    D +T+ SLI  LC    I +A AL  K++  G
Sbjct: 380 LIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQG 439

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +  ++TYN LI+GLC+ G    A ++F+++             +A TY+ +I+GLCKE 
Sbjct: 440 IQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSV------NAWTYNIMINGLCKEG 493



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 65/132 (49%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++N L   L K  H D  ++L K++   G+ P  YTYNILI+  CK GR+ +   V  
Sbjct: 409 ILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQ 468

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +L   ++ +A T+  +I  LC E    EA  L +K+   G   D  TY T+I  L R  
Sbjct: 469 DLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKD 528

Query: 210 HTIVALNLFEEM 221
               A  L  EM
Sbjct: 529 ENEKAEKLLREM 540



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  + R    P++V +N ++  +          HY T   L  +L   G+ P + T+NIL
Sbjct: 45  FHRMLRMRPTPSIVEFNKILGSIVKANN----NHYTTAISLSHQLELKGITPTIVTFNIL 100

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           +NC+C +G ++  F IF +IL   + P  +TF +LI  + +N   ++
Sbjct: 101 VNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKE 147



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 54/104 (51%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++NIL   L K         +F+ L + G   + +TYNI+IN  CK G  +   V
Sbjct: 441 QPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEV 500

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +L ++  +   PDAVT+ ++I+ L  +    +A  L  ++ + G
Sbjct: 501 LLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRG 544


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/357 (30%), Positives = 175/357 (49%), Gaps = 41/357 (11%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ML + P+ PP+  FN +   L K  HY T +SLF++L   G+ P   T  IL+NC+C  G
Sbjct: 1   MLQISPT-PPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTG 59

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            ++  F +L +IL+  + P+++TFT+LIK +C   +  EA      +   G +LD  +Y 
Sbjct: 60  GITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYA 119

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----------- 248
            L+NGLC+ G T  A+ +  +              D + YSTIID LCK           
Sbjct: 120 ILMNGLCKMGETRAAMQMLRK---------TWVNADVVMYSTIIDSLCKGKFVTDAYRLY 170

Query: 249 -----EAGSANFLGFSCMASF--------SALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
                +    N   FS +            A+N +A       V+   + +  ++DG C 
Sbjct: 171 SEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMK-KGVKPNVVTYGAIMDGYCL 229

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
           ++++  A  +F  + + G+ PNV  YNI+I GLC   ++DE  +      LFK ++   +
Sbjct: 230 VNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMN------LFKEMHWKKI 283

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            PD+ TYNILI+  CK+G++S+   +   +     T D +T+ SL+  L  N    Q
Sbjct: 284 NPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQ 340



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 156/322 (48%), Gaps = 24/322 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ML        V  ++ +   L K K       L+  +   G+FP+ YT++IL++  CK  
Sbjct: 137 MLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDR 196

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           +      +L  +++    P+ VT+ +++   C  +++ +A  +F  +   G E +V+ YN
Sbjct: 197 KGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYN 256

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            +INGLC+      A+NLF+EM            PD +TY+ +IDGLCK       LG  
Sbjct: 257 IIINGLCKKKRVDEAMNLFKEMHWKK------INPDVVTYNILIDGLCK-------LG-K 302

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
              S   +++M      V +    + +  L+  LCK   L  A  L + +   G+ PNV 
Sbjct: 303 ISTSLELVDEMRSIGKTVDI----ITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVC 358

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY  LI GLC DG++      E  +++F+ + + G    ++TYN++IN  CK G      
Sbjct: 359 TYTTLIDGLCKDGRL------EDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEAL 412

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +  R+  +   PDAV++ ++I
Sbjct: 413 ALLSRMEDNACIPDAVSYETII 434



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 118/295 (40%), Gaps = 59/295 (20%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  +  +P V ++  +          +  L++F  +   G+ P+ + YNI+IN  CK  
Sbjct: 207 MMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKK 266

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           RV     +   +      PD VT+  LI  LC   +I  +  L  ++R  G  +D+ TYN
Sbjct: 267 RVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYN 326

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           +L++ LC+  H   A+ L +E+ +         +P+  TY+T+IDGLCK+          
Sbjct: 327 SLLHALCKNHHLDQAITLVKEIKDQG------IQPNVCTYTTLIDGLCKDG--------- 371

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
                                                 +L+ A  +FQ +   G    V 
Sbjct: 372 --------------------------------------RLEDAYVIFQEILTEGYHITVW 393

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
           TYN++I GLC  G  DE         L  R+      PD  +Y  +I    + G 
Sbjct: 394 TYNVMINGLCKKGLFDEA------LALLSRMEDNACIPDAVSYETIIYALSEKGE 442



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 42/234 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+AL +F+ M+      P V  +NI+   L K K  D  ++LFK ++   + PD  TYNI
Sbjct: 234 NKALNIFNVMVQ-EGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNI 292

Query: 131 LINCFCKMGRVS-----------------------------------HGFVVLGRILRSC 155
           LI+  CK+G++S                                       ++  I    
Sbjct: 293 LIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQG 352

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             P+  T+T+LI  LC + R+ +A  +F ++   G  + V+TYN +INGLC+ G    AL
Sbjct: 353 IQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEAL 412

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
            L   M +        C PDA++Y TII  L ++  +       C      L+K
Sbjct: 413 ALLSRMEDN------ACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRGLSK 460


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/329 (34%), Positives = 161/329 (48%), Gaps = 25/329 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+  F+ ML MRP  PP   FN +   L   KHY TV+SLFK+    G+ PD  T +ILI
Sbjct: 41  AVASFNLMLLMRPP-PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILI 99

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           NCFC    ++  F V   IL+  F P+A+T  +LIK LC    I +A     +L   G +
Sbjct: 100 NCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQ 159

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           LD  +Y TLINGLC+TG T     L  ++       G   +PD + Y+TII+ LCK    
Sbjct: 160 LDQVSYGTLINGLCKTGETKAVARLLRKLE------GHSVKPDVVMYNTIINSLCKN--- 210

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
              LG +C      + K         +    + +  LI G C +  LK A  L   +   
Sbjct: 211 -KLLGDACDVYSEMIVK--------GISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLK 261

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
            + PNV T+NILI  L  +G+M E K      +L   +    + PD++TYN LI+ +  +
Sbjct: 262 NINPNVCTFNILIDALSKEGKMKEAK------ILLAVMMKACIKPDVFTYNSLIDGYFLV 315

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             V     +F  +     TPD   +T++I
Sbjct: 316 DEVKHAKYVFYSMAQRGVTPDVQCYTNMI 344



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 149/324 (45%), Gaps = 28/324 (8%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            S+  L   L KT     V  L ++L    + PD   YN +IN  CK   +     V   
Sbjct: 163 VSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSE 222

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           ++    +PD VT+T+LI   C    + EA +L  ++++     +V T+N LI+ L + G 
Sbjct: 223 MIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGK 282

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG--LCKEAGSANFLGFSCMASFSALN 268
              A  L   M           +PD  TY+++IDG  L  E   A ++ +S         
Sbjct: 283 MKEAKILLAVMMKA------CIKPDVFTYNSLIDGYFLVDEVKHAKYVFYS--------- 327

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
            MA       VQC    +  +I+GLCK   +  A  LF+ +    ++P++VTYN LI GL
Sbjct: 328 -MAQRGVTPDVQC----YTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGL 382

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C +       H E    L KR+   G+ PD+Y+Y IL++  CK GR+     IF R+L  
Sbjct: 383 CKN------HHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAK 436

Query: 389 CFTPDAVTFTSLIKILEINSFFRQ 412
            +  +   +T LI  L    FF +
Sbjct: 437 GYHLNVHAYTVLINRLCKAGFFDE 460



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 147/318 (46%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N +   L K K       ++  + + G+ PD  TY  LI+ FC MG +   F 
Sbjct: 194 KPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFS 253

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +      P+  TF  LI  L  E ++ EA  L   +     + DVFTYN+LI+G  
Sbjct: 254 LLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYF 313

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A  +F  MA    + GV   PD   Y+ +I+GLCK       +    M+ F  
Sbjct: 314 LVDEVKHAKYVFYSMA----QRGVT--PDVQCYTNMINGLCKTK-----MVDEAMSLFEE 362

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +        +V        +  LIDGLCK   L+ A  L + +   G+ P+V +Y IL+ 
Sbjct: 363 MKHKNMIPDIV-------TYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLD 415

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G++++ K       +F+RL + G   +++ Y +LIN  CK G       +  ++ 
Sbjct: 416 GLCKSGRLEDAKE------IFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKME 469

Query: 387 PSCFTPDAVTFTSLIKIL 404
                PDAVTF  +I+ L
Sbjct: 470 DKGCMPDAVTFDIIIRAL 487



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 119/286 (41%), Gaps = 53/286 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L        H     SL   + L  + P+  T+NILI+   K G++    ++
Sbjct: 230 PDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKIL 289

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++++C  PD  T+ SLI        +  A  +F  +   G   DV  Y  +INGLC+
Sbjct: 290 LAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCK 349

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           T     A++LFEEM + N        PD +TY+++IDGLCK       +          +
Sbjct: 350 TKMVDEAMSLFEEMKHKN------MIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGI 403

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL------------------ 309
               + + +            L+DGLCK  +L+ A+E+FQ L                  
Sbjct: 404 QPDVYSYTI------------LLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINR 451

Query: 310 -----------------PRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                               G MP+ VT++I+IR L    + D+ +
Sbjct: 452 LCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAE 497



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 6/168 (3%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           Y +  R   P V  +  +   L KTK  D  +SLF+ +    + PD  TYN LI+  CK 
Sbjct: 326 YSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKN 385

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
             +     +  R+      PD  ++T L+  LC   R+ +A  +F +L   G  L+V  Y
Sbjct: 386 HHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAY 445

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
             LIN LC+ G    AL+L  +M +        C PDA+T+  II  L
Sbjct: 446 TVLINRLCKAGFFDEALDLKSKMEDKG------CMPDAVTFDIIIRAL 487



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F+ M   +   P + ++N L   L K  H +  ++L KR+   G+ PD Y+Y I
Sbjct: 354 DEAMSLFEEM-KHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTI 412

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK GR+     +  R+L   +  +   +T LI  LC      EA  L +K+   G
Sbjct: 413 LLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKG 472

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           C  D  T++ +I  L        A  +  EM
Sbjct: 473 CMPDAVTFDIIIRALFEKDENDKAEKILREM 503



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 6/87 (6%)

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P    +N ++  L N+      KHY TV  LFK+    G+ PDL T +ILINCFC    +
Sbjct: 55  PPTFHFNNILSSLVNN------KHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHI 108

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  F +F  IL   F P+A+T  +LIK
Sbjct: 109 TLAFSVFANILKRGFHPNAITLNTLIK 135



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LI+  C  + + +A  +F ++ + G  PN +T N LI+GLC  G++ +  ++        
Sbjct: 98  LINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFH------D 151

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +L + G   D  +Y  LIN  CK G   +   +  ++      PD V + ++I  L
Sbjct: 152 QLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSL 207


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 170/357 (47%), Gaps = 44/357 (12%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+  F+ ML MRP  PP   FN +   L K K Y TV+SLFK+    G+ PD  T +IL
Sbjct: 44  DAVASFNRMLLMRPP-PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSIL 102

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           INCFC +  ++  F V   IL+  + P+A+T  +LIK LC    I  A     K+   G 
Sbjct: 103 INCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGF 162

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA- 250
           +LD  +Y TLINGLC+ G T     L  ++       G   +PD + Y+TII  LCK   
Sbjct: 163 QLDQVSYGTLINGLCKAGETKAVARLLRKLE------GHSVKPDLVMYTTIIHCLCKNKL 216

Query: 251 -GSANFL---------------------GFSCMA----SFSALNKMAFYFPLVRVQCLCL 284
            G A  L                     GF  M     +FS LN+M     L  +     
Sbjct: 217 LGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMK----LKNINPDVY 272

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            F  LID L K  K+  A  LF+ +    + PN+VTY  LI GLC +       H E   
Sbjct: 273 TFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKN------HHLERAI 326

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            L K++   G+ P++Y+Y IL++  CK GR+ +    F  +L   +  +  T+  +I
Sbjct: 327 ALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMI 383



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 124/276 (44%), Gaps = 24/276 (8%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            S+  L   L K      V  L ++L    + PD   Y  +I+C CK   +     +   
Sbjct: 167 VSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSE 226

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           ++    +P+  T+T+LI   C    + EA +L  ++++     DV+T+N LI+ L + G 
Sbjct: 227 MIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGK 286

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A++LFEEM + N        P+ +TY+++IDGLCK       +          +   
Sbjct: 287 IDEAMSLFEEMKHKN------MFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPN 340

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
            + + +            L+D LCK  +L+ A++ FQ L   G   NV TYN++I GLC 
Sbjct: 341 VYSYTI------------LLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCK 388

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            G   +      V  L  ++   G  P+  T+  +I
Sbjct: 389 AGLFGD------VMDLKSKMEGKGCMPNAITFKTII 418



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 118/254 (46%), Gaps = 18/254 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P +  +  +  CL K K       L+  + + G+ P+ +TY  LI+ FC MG +   F 
Sbjct: 198 KPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFS 257

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +      PD  TF  LI  L  E +I EA +LF +++      ++ TY +LI+GLC
Sbjct: 258 LLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLC 317

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +  H   A+ L ++M     E G+  +P+  +Y+ ++D LCK     N   F     F  
Sbjct: 318 KNHHLERAIALCKKMK----EQGI--QPNVYSYTILLDALCKGGRLENAKQF-----FQH 366

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L    ++   VR       +  +I+GLCK        +L   +   G MPN +T+  +I 
Sbjct: 367 LLVKGYHLN-VRT------YNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIIC 419

Query: 327 GLCNDGQMDETKHY 340
            L    + D+ + +
Sbjct: 420 ALLEKDENDKAEKF 433



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 25/217 (11%)

Query: 51  QFLKERCKSSGEGDITSITPN------------------EALCVFDYMLNMRPSRPPVTS 92
           + L + C    E  +  I+PN                  EA  + + M  ++   P V +
Sbjct: 215 KLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEM-KLKNINPDVYT 273

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL   LAK    D  +SLF+ +    +FP+  TY  LI+  CK   +     +  ++ 
Sbjct: 274 FNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMK 333

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                P+  ++T L+  LC   R+  A   F  L V G  L+V TYN +INGLC+ G   
Sbjct: 334 EQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFG 393

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
             ++L  +M  G G     C P+AIT+ TII  L ++
Sbjct: 394 DVMDLKSKM-EGKG-----CMPNAITFKTIICALLEK 424



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 109/263 (41%), Gaps = 31/263 (11%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P    F +++  L    R     +LF +    G   D+ T + LIN  C   H   A ++
Sbjct: 59  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSV 118

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
           F  +            P+AIT +T+I GLC       F G    A       +A  F L 
Sbjct: 119 FANILKRG------YHPNAITLNTLIKGLC-------FCGEIKRALHFHDKVVAQGFQLD 165

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           +V     ++  LI+GLCK  + K    L + L    + P++V Y  +I  LC +  + + 
Sbjct: 166 QV-----SYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDA 220

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   L+  +   G+ P+++TY  LI+ FC +G +   F +   +      PD  TF
Sbjct: 221 CD------LYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTF 274

Query: 398 TSLI-------KILEINSFFRQV 413
             LI       KI E  S F ++
Sbjct: 275 NILIDALAKEGKIDEAMSLFEEM 297


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 170/331 (51%), Gaps = 24/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F  ML  RP  P V  F  L G + + +  D V+SL++++    +  D Y++ I
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI CFC   ++       G+I +    PD VTF +L+  LC E R+ EA  LF ++    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V T+ TL+NGLCR G  + A+ L + M     E G+  +P  ITY TI+DG+CK+ 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMM----EDGL--QPTQITYGTIVDGMCKKG 233

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            + + L          + +++   P V +      +  +ID LCK  +   A+ LF  + 
Sbjct: 234 DTVSALNL-----LRKMEEVSHIIPNVVI------YSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P++ TYN +I G C+ G+  + +       L + +    + PD+ TYN LIN F 
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQ------LLQEMLERKISPDVVTYNALINAFV 336

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G+      ++  +LP    P+ +T++S+I
Sbjct: 337 KEGKFFEAEELYDEMLPRGIIPNTITYSSMI 367



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 152/321 (47%), Gaps = 19/321 (5%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS- 142
           R   P V ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+  
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 143 --HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
             H F ++    + C +P+ +TF +LI   C   RI +   L  ++   G   D  TYNT
Sbjct: 379 AEHMFYLMAT--KGC-SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+G    G    AL+L +EM +       +C PD +T  T++DGLC      + L    
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFK 489

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           +   S  +  A + P   V+     +  LI GL    K   A EL++ +P  G++P+ +T
Sbjct: 490 VMQKSKKDLDASH-PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+ +I GLC   ++DE         +F  + S    P++ T+  LIN +CK GRV  G  
Sbjct: 549 YSSMIDGLCKQSRLDEATQ------MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLE 602

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +F  +       +A+T+ +LI
Sbjct: 603 LFCEMGRRGIVANAITYITLI 623



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 158/363 (43%), Gaps = 76/363 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  ++ +   L K   +    +LF  +   G+FPD +TYN +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 148 LGRILRSCFTPDAVTF-----------------------------------TSLIKDLCA 172
           L  +L    +PD VT+                                   +S+I   C 
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           ++R+  A  +F  +   GC  ++ T+NTLI+G C        + L  EM     E G+V 
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT----ETGLVA 428

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL---CL 289
             D  TY+T+I G         +L     A+   L +M           LC + +    L
Sbjct: 429 --DTTTYNTLIHGF--------YLVGDLNAALDLLQEMI-------SSGLCPDIVTCDTL 471

Query: 290 IDGLCKISKLKIARELFQ-----------SLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           +DGLC   KLK A E+F+           S P  G+ P+V TYNILI GL N+G+  E +
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  L++ +   G+ PD  TY+ +I+  CK  R+     +F  +    F+P+ VTFT
Sbjct: 532 E------LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFT 585

Query: 399 SLI 401
           +LI
Sbjct: 586 TLI 588



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 143/334 (42%), Gaps = 70/334 (20%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           Y++  +   P + +FN L       K  D  + L   +  TGL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF--------- 189
           G ++    +L  ++ S   PD VT  +L+  LC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 190 --GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G E DV TYN LI+GL   G  + A  L+EEM +     G+V  PD ITYS++IDGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH----RGIV--PDTITYSSMIDGLC 557

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K+                                               S+L  A ++F 
Sbjct: 558 KQ-----------------------------------------------SRLDEATQMFD 570

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           S+      PNVVT+  LI G C  G++D+         LF  +   G+  +  TY  LI 
Sbjct: 571 SMGSKSFSPNVVTFTTLINGYCKAGRVDDG------LELFCEMGRRGIVANAITYITLIC 624

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            F K+G ++    IF  ++ S   PD +T  +++
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++NIL   L     +     L++ +   G+ PD  TY+ +I+  CK  R+     
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +    F+P+ VTFT+LI   C   R+ +   LF ++   G   +  TY TLI G  
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           + G+   AL++F+EM +     GV   PD IT   ++ GL
Sbjct: 628 KVGNINGALDIFQEMISS----GVY--PDTITIRNMLTGL 661



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD M   +   P V +F  L     K    D  L LF  +   G+  +  TY  
Sbjct: 563 DEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           LI  F K+G ++    +   ++ S   PD +T  +++  L ++  +  A A+  KL++
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/314 (36%), Positives = 155/314 (49%), Gaps = 26/314 (8%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++  L   L K K  +  L    ++   G  PD YTY  +I+  C   R+      L  +
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                TP+ VT+T LI  LC   R+ EA AL +K+R   C     TYN+LI+GLC+    
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERA 131

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A +L EEM          C PD  TY+T+I G CK   S + L       F  L    
Sbjct: 132 SEAYDLLEEMVYSG------CIPDIFTYTTLITGFCKSKKSDDALRV-----FEQLVARG 180

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG-LMPNVVTYNILIRGLCN 330
           F   +V        + CLIDGLCK  +LK A +LF  + ++G  MPN VTYN LI G C 
Sbjct: 181 FRPDVV-------TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCR 233

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G+MDE  +      L +R+  TG  PD+ TY  L+N FCK+ R+   + +  ++     
Sbjct: 234 MGKMDEAMN------LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 287

Query: 391 TPDAVTFTSLIKIL 404
           TPD VTFTSL+  L
Sbjct: 288 TPDVVTFTSLMDGL 301



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 147/306 (48%), Gaps = 33/306 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ +F  M+      P   ++N L     +    D  ++L +R+  TG  PD  TY  
Sbjct: 202 KEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTT 261

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N FCK+ R+   + +L ++ R   TPD VTFTSL+  LC E+R+ +A  +  ++R   
Sbjct: 262 LMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKS 321

Query: 191 CELDVFTYNTLINGLCRTGHTIVALN-LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           C   V+TYNT+++G CR      A   + EEM          C P+ ++++ +I GLCK 
Sbjct: 322 CSPTVYTYNTILDGYCRANQLEEARKFMLEEMD---------CPPNVVSFNIMIRGLCKV 372

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS- 308
             S+  +     A     N     +  V            IDGLC+  K+  A  +++  
Sbjct: 373 NRSSEAMELVEEARRRRCNPDVVMYTTV------------IDGLCREKKVDEACRVYRKM 420

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   G +PN +TY+ L+ GLCN G +D  + Y             G  P++ TYN+LI+ 
Sbjct: 421 LEEPGCLPNSITYSTLVTGLCNAGMLDRARGY----------IEKGCVPNIGTYNLLIDA 470

Query: 369 FCKIGR 374
           F K  R
Sbjct: 471 FRKANR 476



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 147/318 (46%), Gaps = 27/318 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   L K +       L + +  +G  PD +TY  LI  FCK  +      V
Sbjct: 113 PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 172

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG-CELDVFTYNTLINGLC 206
             +++   F PD VT++ LI  LC E R+ EA  LF ++   G C  +  TYN+LI+G C
Sbjct: 173 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 232

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G    A+NL E MA           PD +TY+T+++G CK A   +        ++  
Sbjct: 233 RMGKMDEAMNLLERMAETGSS------PDVVTYTTLMNGFCKLARLDD--------AYDL 278

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           LN+M        V    + F  L+DGLC+ ++L  A  +   + R    P V TYN ++ 
Sbjct: 279 LNQMTRKGLTPDV----VTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILD 334

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C   Q++E + +         L      P++ ++NI+I   CK+ R S    +     
Sbjct: 335 GYCRANQLEEARKF--------MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR 386

Query: 387 PSCFTPDAVTFTSLIKIL 404
                PD V +T++I  L
Sbjct: 387 RRRCNPDVVMYTTVIDGL 404



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 160/336 (47%), Gaps = 31/336 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA    + M N R   P V ++ +L   L K    D  ++L  ++      P   TYN 
Sbjct: 63  HEARKFLEEMAN-RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR-KKCVPTAVTYNS 120

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK  R S  + +L  ++ S   PD  T+T+LI   C   +  +A  +F +L   G
Sbjct: 121 LISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG 180

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV TY+ LI+GLC+ G    A++LF  M          C P+ +TY+++I G C+  
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGS-----CMPNTVTYNSLISGFCR-M 234

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G  +        + + L +MA       V    + +  L++G CK+++L  A +L   + 
Sbjct: 235 GKMD-------EAMNLLERMAETGSSPDV----VTYTTLMNGFCKLARLDDAYDLLNQMT 283

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R GL P+VVT+  L+ GLC + ++ +  H      +   +      P +YTYN +++ +C
Sbjct: 284 RKGLTPDVVTFTSLMDGLCRENRLSDAVH------ILGEMRRKSCSPTVYTYNTILDGYC 337

Query: 371 KIGRVSSG--FVIFGRILPSCFTPDAVTFTSLIKIL 404
           +  ++     F++     P    P+ V+F  +I+ L
Sbjct: 338 RANQLEEARKFMLEEMDCP----PNVVSFNIMIRGL 369



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 86/203 (42%), Gaps = 44/203 (21%)

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF--YFPLVRVQCLCLNFLCL 289
           C  D +TY+++I GLCK       L F        L KM    + P V        +  +
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIF--------LGKMVSKGFHPDV------YTYTAV 52

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE------------- 336
           I  LC  ++L  AR+  + +    L PNVVTY +LI GLC  G++DE             
Sbjct: 53  IHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV 112

Query: 337 ---------------TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
                           +     + L + +  +G  PD++TY  LI  FCK  +      +
Sbjct: 113 PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 172

Query: 382 FGRILPSCFTPDAVTFTSLIKIL 404
           F +++   F PD VT++ LI  L
Sbjct: 173 FEQLVARGFRPDVVTYSCLIDGL 195



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 9/155 (5%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           +ML      P V SFNI+   L K       + L +        PD   Y  +I+  C+ 
Sbjct: 348 FMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCRE 407

Query: 139 GRVSHGFVVLGRILRS--CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
            +V     V  ++L    C  P+++T+++L+  LC    +  A     K    GC  ++ 
Sbjct: 408 KKVDEACRVYRKMLEEPGCL-PNSITYSTLVTGLCNAGMLDRARGYIEK----GCVPNIG 462

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
           TYN LI+   +      A  L ++M      FGVV
Sbjct: 463 TYNLLIDAFRKANRDEDARELLDDMVQRG--FGVV 495


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/314 (36%), Positives = 155/314 (49%), Gaps = 26/314 (8%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++  L   L K K  +  L    ++   G  PD YTY  +I+  C   R+      L  +
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                TP+ VT+T LI  LC   R+ EA AL +K+R   C     TYN+LI+GLC+    
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGLCKAERA 131

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A +L EEM          C PD  TY+T+I G CK   S + L       F  L    
Sbjct: 132 SEAYDLLEEMVYSG------CIPDIFTYTTLITGFCKSKKSDDALRV-----FEQLVARG 180

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG-LMPNVVTYNILIRGLCN 330
           F   +V        + CLIDGLCK  +LK A +LF  + ++G  MPN VTYN LI G C 
Sbjct: 181 FRPDVV-------TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCR 233

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G+MDE  +      L +R+  TG  PD+ TY  L+N FCK+ R+   + +  ++     
Sbjct: 234 MGKMDEAMN------LLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 287

Query: 391 TPDAVTFTSLIKIL 404
           TPD VTFTSL+  L
Sbjct: 288 TPDVVTFTSLMDGL 301



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 147/306 (48%), Gaps = 33/306 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ +F  M+      P   ++N L     +    D  ++L +R+  TG  PD  TY  
Sbjct: 202 KEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTT 261

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N FCK+ R+   + +L ++ R   TPD VTFTSL+  LC E+R+ +A  +  ++R   
Sbjct: 262 LMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKS 321

Query: 191 CELDVFTYNTLINGLCRTGHTIVALN-LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           C   V+TYNT+++G CR      A   + EEM          C P+ ++++ +I GLCK 
Sbjct: 322 CSPTVYTYNTILDGYCRANQLEEARKFMLEEMD---------CPPNVVSFNIMIRGLCKV 372

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS- 308
             S+  +     A     N     +  V            IDGLC+  K+  A  +++  
Sbjct: 373 NRSSEAMELVEEARRRRCNPDVVMYTTV------------IDGLCREKKVDEACRVYRKM 420

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   G +PN +TY+ LI GLCN G +D  + Y             G  P++ TYN+LI+ 
Sbjct: 421 LEEPGCLPNSITYSTLITGLCNAGMLDRARGY----------IEKGCVPNIGTYNLLIDA 470

Query: 369 FCKIGR 374
           F K  R
Sbjct: 471 FRKANR 476



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 147/318 (46%), Gaps = 27/318 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   L K +       L + +  +G  PD +TY  LI  FCK  +      V
Sbjct: 113 PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 172

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG-CELDVFTYNTLINGLC 206
             +++   F PD VT++ LI  LC E R+ EA  LF ++   G C  +  TYN+LI+G C
Sbjct: 173 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 232

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G    A+NL E MA           PD +TY+T+++G CK A   +        ++  
Sbjct: 233 RMGKMDEAMNLLERMAETGSS------PDVVTYTTLMNGFCKLARLDD--------AYDL 278

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           LN+M        V    + F  L+DGLC+ ++L  A  +   + R    P V TYN ++ 
Sbjct: 279 LNQMTRKGLTPDV----VTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILD 334

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C   Q++E + +         L      P++ ++NI+I   CK+ R S    +     
Sbjct: 335 GYCRANQLEEARKF--------MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR 386

Query: 387 PSCFTPDAVTFTSLIKIL 404
                PD V +T++I  L
Sbjct: 387 RRRCNPDVVMYTTVIDGL 404



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 160/336 (47%), Gaps = 31/336 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA    + M N R   P V ++ +L   L K    D  ++L  ++      P   TYN 
Sbjct: 63  HEARKFLEEMAN-RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMR-KKCVPTAVTYNS 120

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK  R S  + +L  ++ S   PD  T+T+LI   C   +  +A  +F +L   G
Sbjct: 121 LISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG 180

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV TY+ LI+GLC+ G    A++LF  M          C P+ +TY+++I G C+  
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGS-----CMPNTVTYNSLISGFCR-M 234

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G  +        + + L +MA       V    + +  L++G CK+++L  A +L   + 
Sbjct: 235 GKMD-------EAMNLLERMAETGSSPDV----VTYTTLMNGFCKLARLDDAYDLLNQMT 283

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R GL P+VVT+  L+ GLC + ++ +  H      +   +      P +YTYN +++ +C
Sbjct: 284 RKGLTPDVVTFTSLMDGLCRENRLSDAVH------ILGEMRRKSCSPTVYTYNTILDGYC 337

Query: 371 KIGRVSSG--FVIFGRILPSCFTPDAVTFTSLIKIL 404
           +  ++     F++     P    P+ V+F  +I+ L
Sbjct: 338 RANQLEEARKFMLEEMDCP----PNVVSFNIMIRGL 369



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 86/203 (42%), Gaps = 44/203 (21%)

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF--YFPLVRVQCLCLNFLCL 289
           C  D +TY+++I GLCK       L F        L KM    + P V        +  +
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIF--------LGKMVSKGFHPDV------YTYTAV 52

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE------------- 336
           I  LC  ++L  AR+  + +    L PNVVTY +LI GLC  G++DE             
Sbjct: 53  IHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV 112

Query: 337 ---------------TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
                           +     + L + +  +G  PD++TY  LI  FCK  +      +
Sbjct: 113 PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 172

Query: 382 FGRILPSCFTPDAVTFTSLIKIL 404
           F +++   F PD VT++ LI  L
Sbjct: 173 FEQLVARGFRPDVVTYSCLIDGL 195



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 7/147 (4%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           +ML      P V SFNI+   L K       + L +        PD   Y  +I+  C+ 
Sbjct: 348 FMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCRE 407

Query: 139 GRVSHGFVVLGRILRS--CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
            +V     V  ++L    C  P+++T+++LI  LC    +  A     K    GC  ++ 
Sbjct: 408 KKVDEACRVYRKMLEEPGCL-PNSITYSTLITGLCNAGMLDRARGYIEK----GCVPNIG 462

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMAN 223
           TYN LI+   +      A  L ++M  
Sbjct: 463 TYNLLIDAFRKANRDEDARELLDDMVQ 489


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 178/390 (45%), Gaps = 73/390 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F  M+  RP  P +  F+ L   +AK K +D V+S  +++ + G+  + YTYNI
Sbjct: 47  DEAVDLFGEMVKSRPF-PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105

Query: 131 LINCFCKMGRVSHGFVVLGRILR-----------------------------------SC 155
           +INC C+  ++S    +LG++++                                     
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           + PD VTFT+L+  L   ++  EA AL  ++ V GC+ D+ TY  +INGLC+ G   +AL
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
           NL  +M  G        E D + YST+ID LCK     + L          +    F + 
Sbjct: 226 NLLNKMEKGK------IEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279

Query: 276 LVRVQCLC------------------------LNFLCLIDGLCKISKLKIARELFQSLPR 311
            + + CLC                        + F  LID   K  KL  A +LF  + +
Sbjct: 280 SL-ISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQ 338

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
             + PN+VTYN LI G C   ++DE +       +F  + S    PD+ TYN LIN FCK
Sbjct: 339 RSIDPNIVTYNSLINGFCMHDRLDEAQQ------IFTLMVSKDCLPDVVTYNTLINGFCK 392

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +V  G  +F  +       + VT+T+LI
Sbjct: 393 AKKVVDGMELFRDMSRRGLVGNTVTYTTLI 422



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 165/334 (49%), Gaps = 29/334 (8%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P+ AL + + M   +     V  ++ +   L K +H D  L+LF  ++  G+ PD +TY+
Sbjct: 221 PDLALNLLNKMEKGKI-EADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI+C C  GR S    +L  +L     P+ VTF SLI     E +++EA  LF ++   
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 339

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
             + ++ TYN+LING C       A  +F  M + +      C PD +TY+T+I+G CK 
Sbjct: 340 SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD------CLPDVVTYNTLINGFCKA 393

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQ 307
                            ++ M  +  + R   +   + +  LI G  + S    A+ +F+
Sbjct: 394 K--------------KVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFK 439

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +   G+ PN++TYN L+ GLC +G++      E   ++F+ L  + + PD+YTYNI+  
Sbjct: 440 QMVSDGVHPNIMTYNTLLDGLCKNGKL------EKAMVVFEYLQKSKMEPDIYTYNIMSE 493

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             CK G+V  G+ +F  +      PD + + ++I
Sbjct: 494 GMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMI 527



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 130/309 (42%), Gaps = 26/309 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD M+  R   P + ++N L          D    +F  +      PD  TYN L
Sbjct: 328 EAEKLFDEMIQ-RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN FCK  +V  G  +   + R     + VT+T+LI      S    A  +F ++   G 
Sbjct: 387 INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             ++ TYNTL++GLC+ G    A+ +FE +           EPD  TY+ + +G+CK   
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK------MEPDIYTYNIMSEGMCKAGK 500

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +     C  S             V+   +  N   +I G CK    + A  LF  +  
Sbjct: 501 VEDGWDLFCSLSLKG----------VKPDVIAYN--TMISGFCKKGLKEEAYTLFIKMKE 548

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +P+  TYN LIR    DG  D+    E    L K + S     D  TY ++ +    
Sbjct: 549 DGPLPDSGTYNTLIRAHLRDG--DKAASAE----LIKEMRSCRFAGDASTYGLVTDMLHD 602

Query: 372 IGRVSSGFV 380
            GR+  GF+
Sbjct: 603 -GRLDKGFL 610



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 27/287 (9%)

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
           +GL  D Y   +  N    + ++     + G +++S   P  V F+ L+  +    +   
Sbjct: 25  SGLSYDGYREKLSRNALLHL-KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDL 83

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN-GNGEFGVVCEPDAI 237
             +   K+ + G   +++TYN +IN LCR      AL +  +M   G G       P  +
Sbjct: 84  VISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYG-------PSIV 136

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           T +++++G C      N +    +A    + +M +       Q   + F  L+ GL + +
Sbjct: 137 TLNSLLNGFCH----GNRIS-EAVALVDQMVEMGY-------QPDTVTFTTLVHGLFQHN 184

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           K   A  L + +   G  P++VTY  +I GLC  G+ D          L  ++    +  
Sbjct: 185 KASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD------LALNLLNKMEKGKIEA 238

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           D+  Y+ +I+  CK   V     +F  +      PD  T++SLI  L
Sbjct: 239 DVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 169/348 (48%), Gaps = 35/348 (10%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           F+++L+ +   P +  F  + G L K  HY  V+SL +++   G+  +  T +ILINCF 
Sbjct: 56  FNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFS 115

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           ++G  S  F V   IL+  + PDA+T T+LIK LC +  I +A     K+   G +L+  
Sbjct: 116 QLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQV 175

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE------- 249
           +Y TLINGLC+ G T  AL +   +       G +   D + Y+TIIDG+CK+       
Sbjct: 176 SYRTLINGLCKVGQTKAALEMLRRID------GKLVRLDVVMYNTIIDGVCKDKLVNDAF 229

Query: 250 --------------AGSANFL--GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
                           + N L  G   M        +     L  +      F  L+D  
Sbjct: 230 DFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAF 289

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK  K+K A+ +F  + +  + PN+VTYN L+ G C    ++E    E++   F  +   
Sbjct: 290 CKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYC---LVNEVNKAESI---FNTMAQI 343

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G+ PD+++Y+I+I+ FCKI  V     +F  +      PD VT+ SLI
Sbjct: 344 GVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLI 391



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 167/365 (45%), Gaps = 41/365 (11%)

Query: 28  NEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALC-------VFDYM 80
           N+ SY T    L    + +A+LE   +   K      +   T  + +C        FD+ 
Sbjct: 173 NQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFY 232

Query: 81  LNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
             M   R  P V ++N L   L         + L  ++ L  + P  YT++IL++ FCK 
Sbjct: 233 SEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKE 292

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G+V     V   +++    P+ VT+ SL+   C  + + +A ++F  +   G   DV +Y
Sbjct: 293 GKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSY 352

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE---PDAITYSTIIDGLCKEAGSANF 255
           + +I+G C+      A+ LFEEM          C+   PD +TY+++IDGLCK +G  ++
Sbjct: 353 SIMISGFCKIKMVDEAMKLFEEMH---------CKQIFPDVVTYNSLIDGLCK-SGRISY 402

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                  +   + +M        +    + +  L+D LCK   +  A EL   L    + 
Sbjct: 403 -------ALKLIGEMHDRGQPPNI----ITYNSLLDALCKNHHVDKAIELLTKLKDHNIQ 451

Query: 316 PNVVTYNILIRGLCNDGQM-DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
           P+V TYNILI GLC  G++ D  K +E V +        G   D+YTYN +I  FCK G 
Sbjct: 452 PSVCTYNILINGLCKSGRLKDAQKVFEDVLV-------NGYNIDVYTYNTMIKGFCKKGF 504

Query: 375 VSSGF 379
           V   F
Sbjct: 505 VIPQF 509



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 144/316 (45%), Gaps = 24/316 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R  V  +N +   + K K  +     +  +    + P   TYN LI   C MG++     
Sbjct: 206 RLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIG 265

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L +++     P   TF+ L+   C E ++ EA  +F  +     + ++ TYN+L+NG C
Sbjct: 266 LLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYC 325

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A ++F  MA    + GV   PD  +YS +I G CK       +    M  F  
Sbjct: 326 LVNEVNKAESIFNTMA----QIGVA--PDVHSYSIMISGFCKIK-----MVDEAMKLFEE 374

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           ++     FP V      + +  LIDGLCK  ++  A +L   +   G  PN++TYN L+ 
Sbjct: 375 MHCKQI-FPDV------VTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLD 427

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC +  +D+         L  +L    + P + TYNILIN  CK GR+     +F  +L
Sbjct: 428 ALCKNHHVDKA------IELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVL 481

Query: 387 PSCFTPDAVTFTSLIK 402
            + +  D  T+ ++IK
Sbjct: 482 VNGYNIDVYTYNTMIK 497



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%)

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G + +  HY  V  L +++   G+  +L T +ILINCF ++G  S  F +F  IL   + 
Sbjct: 77  GSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFSVFSNILKKGYE 136

Query: 392 PDAVTFTSLIK 402
           PDA+T T+LIK
Sbjct: 137 PDAITLTTLIK 147


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 170/331 (51%), Gaps = 24/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F  ML  RP  P V  F  L G + + +  D V+SL++++    +  D Y++ I
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI CFC   ++       G++ +    PD VTF +L+  LC E R+ EA  LF ++    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V T+ TL+NGLCR G  + A+ L + M     E G+  +P  ITY TI+DG+CK+ 
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMM----EDGL--QPTQITYGTIVDGMCKKG 233

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            + + L          + +++   P V +      +  +ID LCK  +   A+ LF  + 
Sbjct: 234 DTVSALNL-----LRKMEEVSHIIPNVVI------YSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P++ TYN +I G C+ G+  + +       L + +    + PD+ TYN LIN F 
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQ------LLQEMLERKISPDVVTYNALINAFV 336

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G+      ++  +LP    P+ +T++S+I
Sbjct: 337 KEGKFFEAEELYDEMLPRGIIPNTITYSSMI 367



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 162/355 (45%), Gaps = 35/355 (9%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P+  + ++  M   +  R  + SF IL  C          LS F +L   GL PD  T+N
Sbjct: 95  PDLVISLYQKM-ERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFN 153

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            L++  C   RVS    +  ++  +   P+ VTFT+L+  LC E RI+EA AL  ++   
Sbjct: 154 TLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED 213

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G +    TY T+++G+C+ G T+ ALNL  +M     E   +  P+ + YS IID LCK+
Sbjct: 214 GLQPTQITYGTIVDGMCKKGDTVSALNLLRKME----EVSHII-PNVVIYSAIIDSLCKD 268

Query: 250 AGSAN-----------------------FLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
              ++                        +GF     +S   ++       ++    + +
Sbjct: 269 GRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTY 328

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LI+   K  K   A EL+  +   G++PN +TY+ +I G C   ++D  +H      +
Sbjct: 329 NALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH------M 382

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           F  + + G  P+L T+N LI+ +C   R+  G  +   +  +    D  T+ +LI
Sbjct: 383 FYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLI 437



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 152/321 (47%), Gaps = 19/321 (5%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS- 142
           R   P V ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+  
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 143 --HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
             H F ++    + C +P+ +TF +LI   C   RI +   L  ++   G   D  TYNT
Sbjct: 379 AEHMFYLMAT--KGC-SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+G    G    AL+L +EM +       +C PD +T  T++DGLC      + L    
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFK 489

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           +   S  +  A + P   V+     +  LI GL    K   A EL++ +P  G++P+ +T
Sbjct: 490 VMQKSKKDLDASH-PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+ +I GLC   ++DE         +F  + S    P++ T+  LIN +CK GRV  G  
Sbjct: 549 YSSMIDGLCKQSRLDEATQ------MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLE 602

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +F  +       +A+T+ +LI
Sbjct: 603 LFCEMGRRGIVANAITYITLI 623



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 158/363 (43%), Gaps = 76/363 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  ++ +   L K   +    +LF  +   G+FPD +TYN +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 148 LGRILRSCFTPDAVTF-----------------------------------TSLIKDLCA 172
           L  +L    +PD VT+                                   +S+I   C 
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           ++R+  A  +F  +   GC  ++ T+NTLI+G C        + L  EM     E G+V 
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT----ETGLVA 428

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL---CL 289
             D  TY+T+I G         +L     A+   L +M           LC + +    L
Sbjct: 429 --DTTTYNTLIHGF--------YLVGDLNAALDLLQEMI-------SSGLCPDIVTCDTL 471

Query: 290 IDGLCKISKLKIARELFQ-----------SLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           +DGLC   KLK A E+F+           S P  G+ P+V TYNILI GL N+G+  E +
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  L++ +   G+ PD  TY+ +I+  CK  R+     +F  +    F+P+ VTFT
Sbjct: 532 E------LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFT 585

Query: 399 SLI 401
           +LI
Sbjct: 586 TLI 588



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 143/334 (42%), Gaps = 70/334 (20%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           Y++  +   P + +FN L       K  D  + L   +  TGL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF--------- 189
           G ++    +L  ++ S   PD VT  +L+  LC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 190 --GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G E DV TYN LI+GL   G  + A  L+EEM +     G+V  PD ITYS++IDGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH----RGIV--PDTITYSSMIDGLC 557

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K+                                               S+L  A ++F 
Sbjct: 558 KQ-----------------------------------------------SRLDEATQMFD 570

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           S+      PNVVT+  LI G C  G++D+         LF  +   G+  +  TY  LI 
Sbjct: 571 SMGSKSFSPNVVTFTTLINGYCKAGRVDDG------LELFCEMGRRGIVANAITYITLIC 624

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            F K+G ++    IF  ++ S   PD +T  +++
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++NIL   L     +     L++ +   G+ PD  TY+ +I+  CK  R+     
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +    F+P+ VTFT+LI   C   R+ +   LF ++   G   +  TY TLI G  
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           + G+   AL++F+EM +     GV   PD IT   ++ GL
Sbjct: 628 KVGNINGALDIFQEMISS----GVY--PDTITIRNMLTGL 661



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD M   +   P V +F  L     K    D  L LF  +   G+  +  TY  
Sbjct: 563 DEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           LI  F K+G ++    +   ++ S   PD +T  +++  L ++  +  A A+  KL++
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 185/402 (46%), Gaps = 74/402 (18%)

Query: 59  SSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL 118
           SSG   +  I  ++A+ +F  M+  RP  P V  FN LF  +AKTK Y+ VL+L K++  
Sbjct: 61  SSG---LVGIKADDAVDLFRDMIQSRP-LPTVIDFNRLFSAIAKTKQYELVLALCKQMES 116

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
            G+    YT +I+INCFC+  ++S+ F  +G+I++  + PD V F +L+  LC E R+ E
Sbjct: 117 KGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSE 176

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGL--------------------------------- 205
           A  L  ++   G +  + T NTL+NGL                                 
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLN 236

Query: 206 --CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL------- 256
             C++G T +A+ L  +M   N +       DA+ YS IIDGLCK+    N         
Sbjct: 237 VMCKSGQTALAMELLRKMEERNIKL------DAVKYSIIIDGLCKDGSLDNAFNLFNEME 290

Query: 257 ----------------GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
                           GF     +    K+       ++    + F  LID   K  KL+
Sbjct: 291 IKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLR 350

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A +L + + + G+ PN +TYN LI G C + +++E      + +      S G  PD+ 
Sbjct: 351 EADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMI------SKGCDPDIM 404

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           T+NILIN +CK  R+  G  +F  +       + VT+ +L++
Sbjct: 405 TFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQ 446



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 143/324 (44%), Gaps = 30/324 (9%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +F++L     K         L K +   G+ P+  TYN LI+ FCK  R+  
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              ++  ++     PD +TF  LI   C  +RI +   LF ++ + G   +  TYNTL+ 
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQ 446

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C++G   VA  LF+EM +          PD ++Y  ++DGLC                
Sbjct: 447 GFCQSGKLEVAKKLFQEMVSRR------VRPDIVSYKILLDGLCDNG------------- 487

Query: 264 FSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
              L K    F  +    + L+   ++ +I G+C  SK+  A +LF SLP  G+  +   
Sbjct: 488 --ELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARA 545

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YNI+I  LC    + +        +LF+++   G  PD  TYNILI         ++   
Sbjct: 546 YNIMISELCRKDSLSKAD------ILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAE 599

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           +   +  S F  D  T   +I +L
Sbjct: 600 LIEEMKSSGFPADVSTVKMVINML 623



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 160/332 (48%), Gaps = 25/332 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  +F+ M  ++  +  + ++N L G       +D    L + +    + P+  T+++
Sbjct: 280 DNAFNLFNEM-EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV 338

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F K G++     +L  +++    P+ +T+ SLI   C E+R+ EA  +   +   G
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+ D+ T+N LING C+       L LF EM+      GV+   + +TY+T++ G C+  
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMS----LRGVI--ANTVTYNTLVQGFCQS- 451

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                             K+       RV+   +++  L+DGLC   +L+ A E+F  + 
Sbjct: 452 -----------GKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIE 500

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           ++ +  ++  Y I+I G+CN  ++D+       + LF  L   G+  D   YNI+I+  C
Sbjct: 501 KSKMELDIGIYMIIIHGMCNASKVDDA------WDLFCSLPLKGVKLDARAYNIMISELC 554

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +   +S   ++F ++      PD +T+  LI+
Sbjct: 555 RKDSLSKADILFRKMTEEGHAPDELTYNILIR 586



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +I+  C+  KL  A      + + G  P+ V +N L+ GLC + ++ E         L  
Sbjct: 129 MINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEA------LELVD 182

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           R+   G  P L T N L+N  C  G+VS   V+  R++ + F P+ VT+  ++ ++
Sbjct: 183 RMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVM 238


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 123/400 (30%), Positives = 196/400 (49%), Gaps = 41/400 (10%)

Query: 31  SYPTTTAT-----LRLTVKDRA-SLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMR 84
           S P T++T     + L   DR  S +  L    ++   G+I  I   +A   FD M+   
Sbjct: 29  SVPQTSSTNHPNPILLAFNDRGISFQHRLSSFLRNCKTGNIDVI---QAFHFFDLMMRSH 85

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P  PP++SFN L G LAK  HY  + SL+ ++ L GL PD +T NIL NC C + RVS G
Sbjct: 86  PI-PPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILANCLCNLNRVSEG 144

Query: 145 FVVLGRILRSCFTPDAVTFTSLIK---DLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
              +  ILR  + PD VT+ +LIK    LC      EA  +F +++  G   +V +Y++L
Sbjct: 145 LAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSL 204

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           ++G C  G    +  LF EM +     GV  +P+ + ++ +ID LCKE           +
Sbjct: 205 VHGFCCAGKLEESKRLFNEMVDQ----GV--QPNLVQFNVLIDILCKEGK---------I 249

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
              S+  K+    P    +   +++  LI+G CKI K++ A  L+  +P+ G  PNV TY
Sbjct: 250 GDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTY 309

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           + L+ GL   G++ +         LF  + ++G+  D   Y I ++  CK G +     +
Sbjct: 310 STLLTGLLQTGKVGDANK------LFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMEL 363

Query: 382 FGRILPSCFTPDAVTFTSLI-------KILEINSFFRQVA 414
           F  +    F  D  +++ LI       K+     FF+Q++
Sbjct: 364 FNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLS 403



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 145/325 (44%), Gaps = 50/325 (15%)

Query: 88  PPVTSFNILFGCL---AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P + ++N L   L    K  H D    +F+ +   G+ P+  +Y+ L++ FC  G++   
Sbjct: 158 PDIVTYNTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEES 217

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME---AAALFTKLRVFGCELDVFTYNTL 201
             +   ++     P+ V F  LI  LC E +I +   A  LF  +   GCE +  +Y  L
Sbjct: 218 KRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTIL 277

Query: 202 INGLCRTGHTIVALNLFEEM-------------------------ANGNGEFGVV----C 232
           ING C+      A+NL+ EM                          + N  FGV+     
Sbjct: 278 INGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGI 337

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
             D+  Y   +DGLCK     N + F  M  F+ L    F            ++  LIDG
Sbjct: 338 SVDSCIYVIFLDGLCK-----NGVLFEAMELFNELKSYNFKLDFE-------SYSRLIDG 385

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LCK  K++IA E F+ L + GL PNVVT NI+I G C   Q+D+      +F   +++  
Sbjct: 386 LCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKAN---ILFEKMEKMEE 442

Query: 353 TGLFPDLYTYNILINCFCKIGRVSS 377
            G  PD+ TYN L+  FC+  ++  
Sbjct: 443 NGCTPDIITYNTLLRGFCESNKLEE 467



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 8/179 (4%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ +++ M  +   RP V +++ L   L +T        LF  +  +G+  D   Y I 
Sbjct: 289 EAMNLYNEMPQVG-KRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIF 347

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G +     +   +    F  D  +++ LI  LC   ++  A   F +L   G 
Sbjct: 348 LDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGL 407

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMA--NGNGEFGVVCEPDAITYSTIIDGLCK 248
           + +V T N +I+G CR      A  LFE+M     NG     C PD ITY+T++ G C+
Sbjct: 408 QPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENG-----CTPDIITYNTLLRGFCE 461


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 184/349 (52%), Gaps = 30/349 (8%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           +E+   +G   ++ +  ++A+ +F  M+  RP  P +  F+ L   +AK   +D V+SL 
Sbjct: 49  REKLSRNG---LSELKLDDAVALFGEMVKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLG 104

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           +++   G+  + YTY+ILINCFC+  ++     VLG++++  + P+ VT +SL+   C  
Sbjct: 105 EQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHS 164

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVC 232
            RI EA AL  ++ V G + +  T+NTLI+GL        A+ L + M A G       C
Sbjct: 165 KRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG-------C 217

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
           +PD +TY  +++GLCK   +          +F+ LNKM       +++   L +  +IDG
Sbjct: 218 QPDLVTYGVVVNGLCKRGDTD--------LAFNLLNKM----EQGKLEPGVLIYNTIIDG 265

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LCK   +  A  LF+ +   G+ PNVVTY+ LI  LCN G+  +         L   +  
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR------LLSDMIE 319

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             + PD++T++ LI+ F K G++     ++  ++     P  VT++SLI
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLI 368



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 158/319 (49%), Gaps = 32/319 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V  +N +   L K KH D  L+LFK +   G+ P+  TY+ LI+C C  GR S    
Sbjct: 253 EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 312

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++     PD  TF++LI     E +++EA  L+ ++     +  + TY++LING C
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 372

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMA 262
                  A  +FE M + +      C PD +TY+T+I G CK    E G         M 
Sbjct: 373 MHDRLDEAKQMFEFMVSKH------CFPDVVTYNTLIKGFCKYKRVEEG---------ME 417

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
            F  +++       V        +  LI GL +     +A+E+F+ +   G+ PN++TYN
Sbjct: 418 VFREMSQRGLVGNTV-------TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 470

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            L+ GLC +G++      E   ++F+ L  + + P +YTYNI+I   CK G+V  G+ +F
Sbjct: 471 TLLDGLCKNGKL------EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 524

Query: 383 GRILPSCFTPDAVTFTSLI 401
             +      PD V + ++I
Sbjct: 525 CNLSLKGVKPDVVAYNTMI 543



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 128/309 (41%), Gaps = 26/309 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++D M+  R   P + +++ L          D    +F+ +     FPD  TYN L
Sbjct: 344 EAEKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  FCK  RV  G  V   + +     + VT+  LI+ L        A  +F ++   G 
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             ++ TYNTL++GLC+ G    A+ +FE +           EP   TY+ +I+G+CK   
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK------MEPTIYTYNIMIEGMCKAGK 516

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +     C  S             V+   +  N   +I G C+    + A  LF+ +  
Sbjct: 517 VEDGWDLFCNLSLKG----------VKPDVVAYN--TMISGFCRKGSKEEADALFKEMKE 564

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +PN   YN LIR    DG  + +        L K + S G   D  T  ++ N    
Sbjct: 565 DGTLPNSGCYNTLIRARLRDGDREASAE------LIKEMRSCGFAGDASTIGLVTNMLHD 618

Query: 372 IGRVSSGFV 380
            GR+   F+
Sbjct: 619 -GRLDKSFL 626



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 123/294 (41%), Gaps = 25/294 (8%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
           S F R   +G     Y   +  N   ++ ++     + G +++S   P  + F+ L+  +
Sbjct: 33  SFFWRRAFSGKTSYDYREKLSRNGLSEL-KLDDAVALFGEMVKSRPFPSIIEFSKLLSAI 91

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
              ++     +L  +++  G   + +TY+ LIN  CR     +AL +  +M        +
Sbjct: 92  AKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMK------L 145

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
             EP+ +T S++++G C             ++   AL    F   +   Q   + F  LI
Sbjct: 146 GYEPNIVTLSSLLNGYCHSKR---------ISEAVALVDQMF---VTGYQPNTVTFNTLI 193

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
            GL   +K   A  L   +   G  P++VTY +++ GLC  G  D        F L  ++
Sbjct: 194 HGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD------LAFNLLNKM 247

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               L P +  YN +I+  CK   +     +F  +      P+ VT++SLI  L
Sbjct: 248 EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 171/337 (50%), Gaps = 25/337 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  VF   L  R  RP V +++ L   L+K    D  L L  ++   G   +  TY+ +
Sbjct: 226 DAHNVFKRALE-RGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTV 284

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++   K+GR+    VVL ++  +   PDAVT+ +LI       R+ EA  L  ++   G 
Sbjct: 285 VDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGF 344

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              V TY TL +GLCR+G    A+ + + MA         C P+AITYS+I+DGLCK   
Sbjct: 345 HPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG------CAPNAITYSSIVDGLCKAGR 398

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
               LG+     F  + +     P V      + +  LIDGLCK  K+  A E  + + R
Sbjct: 399 VTEALGY-----FEKMARDEVVAPHV------IAYSALIDGLCKAGKIDEAYEFLERMIR 447

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           AG +P+VVT++ILI GLC+ G++D      T   LF+ +   G  PD+ TY  L++  C+
Sbjct: 448 AGRIPDVVTFSILINGLCDAGRID------TGLELFRGMAERGCVPDMVTYATLVDRLCR 501

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-ILEIN 407
             RV   F +F ++     +PD  T  ++I  +LE+N
Sbjct: 502 ASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVN 538



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 164/343 (47%), Gaps = 29/343 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F  M++ +   P V ++  L   L K +       LF+     G  P   TYN 
Sbjct: 12  DKAITLFKQMVD-KAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNT 70

Query: 131 LINCFCKMGRVSHGFVVLGRI-LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +I+  CK GR+ +   +   + +   F P  VT+++LI  LC +  + +   L  ++   
Sbjct: 71  MIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGR 130

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           GC  +  TYNTL+N L   G +  A +L E+MA  NG     C P+ IT+  II GLCKE
Sbjct: 131 GCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMA-ANG-----CPPELITFGLIIKGLCKE 184

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                       A+F  +++M      +    +  N   ++DGLCK  ++  A  +F+  
Sbjct: 185 G--------EIEAAFRVVDEMFMIESGLSPDVITFN--SVLDGLCKEQRILDAHNVFKRA 234

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G  PNVVTY+ LI GL    +MDE         L  ++   G   +  TY+ +++  
Sbjct: 235 LERGCRPNVVTYSTLIDGLSKMAKMDEA------LQLLAKMVELGCRANTVTYSTVVDGL 288

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            K+GR+    V+  ++  +   PDAVT+ +L     I+ FF++
Sbjct: 289 LKVGRMEDAVVVLRQMRDAGCLPDAVTYNTL-----IDGFFKR 326



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 149/306 (48%), Gaps = 28/306 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +   M+ +      VT   ++ G L   +  D V+ L +++   G  PD  TYN 
Sbjct: 260 DEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVL-RQMRDAGCLPDAVTYNT 318

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F K  R+     +L  +L + F P  VT+T+L   LC   R  EA  +   +   G
Sbjct: 319 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 378

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +  TY+++++GLC+ G    AL  FE+MA        V  P  I YS +IDGLCK A
Sbjct: 379 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDE-----VVAPHVIAYSALIDGLCK-A 432

Query: 251 GSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           G  +        ++  L +M  A   P V      + F  LI+GLC   ++    ELF+ 
Sbjct: 433 GKID-------EAYEFLERMIRAGRIPDV------VTFSILINGLCDAGRIDTGLELFRG 479

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G +P++VTY  L+  LC   ++DE       F LF+++ S GL PD  T   +I+ 
Sbjct: 480 MAERGCVPDMVTYATLVDRLCRASRVDEA------FDLFQQMRSDGLSPDRSTRRTMIHG 533

Query: 369 FCKIGR 374
             ++ R
Sbjct: 534 LLEVNR 539



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 173/427 (40%), Gaps = 106/427 (24%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL ++D M      RP V +++ L   L +    D    L + +   G  P+  TYN L+
Sbjct: 84  ALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLV 143

Query: 133 NC-----------------------------------FCKMGRVSHGFVVLGR--ILRSC 155
           N                                     CK G +   F V+    ++ S 
Sbjct: 144 NALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESG 203

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
            +PD +TF S++  LC E RI++A  +F +    GC  +V TY+TLI+GL +      AL
Sbjct: 204 LSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEAL 263

Query: 216 NLFEEMAN--------------------GNGEFGVV---------CEPDAITYSTIIDGL 246
            L  +M                      G  E  VV         C PDA+TY+T+IDG 
Sbjct: 264 QLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGF 323

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC----------------------- 283
            K       +G         + +  F+  +V    LC                       
Sbjct: 324 FKRQRLREAVGL-----LREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 378

Query: 284 -----LNFLCLIDGLCKISKLKIARELFQSLPRAGLM-PNVVTYNILIRGLCNDGQMDET 337
                + +  ++DGLCK  ++  A   F+ + R  ++ P+V+ Y+ LI GLC  G++DE 
Sbjct: 379 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEA 438

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
             YE      +R+   G  PD+ T++ILIN  C  GR+ +G  +F  +      PD VT+
Sbjct: 439 --YE----FLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTY 492

Query: 398 TSLIKIL 404
            +L+  L
Sbjct: 493 ATLVDRL 499



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 19/164 (11%)

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +IDGLCK       +       F  +   A Y  +V        +  LIDGL K  ++K 
Sbjct: 1   MIDGLCKSRKVDKAITL-----FKQMVDKAIYPDVV-------TYGALIDGLGKQRRVKE 48

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET-KHYETVFLLFKRLNSTGLFPDLY 360
           A +LF+     G  P VVTYN +I GLC  G+++     Y+ + + F      G  P + 
Sbjct: 49  AYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHF------GFRPTVV 102

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           TY+ LI+  C+   V  G  +   +      P+AVT+ +L+  L
Sbjct: 103 TYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNAL 146



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 83  MRPSR-PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           +R  R P V +F+IL   L      DT L LF+ +   G  PD  TY  L++  C+  RV
Sbjct: 446 IRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRV 505

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
              F +  ++     +PD  T  ++I  L   +R  +A
Sbjct: 506 DEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDA 543


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/356 (33%), Positives = 172/356 (48%), Gaps = 44/356 (12%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+  FD ML MRP  PP   FN +   L   KHY TV+SLFK+    G  PD  T NIL+
Sbjct: 47  AVASFDRMLLMRPP-PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILM 105

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           NCFC +  ++  F VL  IL+  + P+A+T  +LIK LC    I +A     ++   G +
Sbjct: 106 NCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQ 165

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK---- 248
           L+  +Y TLINGLC+TG T     L  ++       G   +PD + Y+TII  LCK    
Sbjct: 166 LNQVSYRTLINGLCKTGETKAVARLLRKLE------GHSVKPDVVMYNTIIHSLCKNKLL 219

Query: 249 ------------EAGSANFL-------GFSCMA----SFSALNKMAFYFPLVRVQCLCLN 285
                       +  S N +       GF  M     +FS LN+M     L  +      
Sbjct: 220 GDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMK----LKNINPDVCT 275

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  LID L K  K+K A+ +   + +A + P+VVTYN LI G     ++   K+      
Sbjct: 276 FNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKY------ 329

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +F  +  +G+ P++ TY  +I+  CK   V     +F  +      PD VT+TSLI
Sbjct: 330 VFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLI 385



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 159/353 (45%), Gaps = 40/353 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F+ M   +   P + ++  L   L K  H +  ++L K++   G+ PD Y+Y I
Sbjct: 360 DEAMSLFEEM-KYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTI 418

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK GR+ +      R+L   +  +  T+  +I  LC      EA  L +K+   G
Sbjct: 419 LLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKG 478

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVV----------------CE 233
           C  D  T+ T+I  L        A  +  EM A G  E   V                 +
Sbjct: 479 CMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIK 538

Query: 234 PDAITYSTIIDG--LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
           PD +TY T++DG  L  E   A ++ +S          MA       VQC    +  +ID
Sbjct: 539 PDVVTYGTLMDGYFLVNELKHAKYVFYS----------MAQMGVTPNVQC----YTIMID 584

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GLCK   +  A  LF+ +    + PN+VTY  LI  LC +       H E    L K + 
Sbjct: 585 GLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKN------HHLERAIALLKEMK 638

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             G+ PD+Y+Y IL++  CK GR+     IF R+L   +  +   +T++I  L
Sbjct: 639 EHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINEL 691



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 147/337 (43%), Gaps = 47/337 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L        H     SL   + L  + PD  T+N LI+   K G++    +V
Sbjct: 236 PNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIV 295

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++++C  PD VT+ SLI      +++  A  +F  +   G   +V TY T+I+GLC+
Sbjct: 296 LAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCK 355

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A++LFEEM   N        PD +TY+++IDGLCK     N      +A    +
Sbjct: 356 EKMVDEAMSLFEEMKYKN------MIPDIVTYTSLIDGLCK-----NHHLERAIALCKKM 404

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +         +Q    ++  L+D LCK  +L+ A+E FQ L   G   NV TYN++I G
Sbjct: 405 KEQG-------IQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMING 457

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF------------------ 369
           LC      E    ++      ++   G  PD  T+  +I                     
Sbjct: 458 LCKADLFGEAMDLKS------KMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIA 511

Query: 370 -----CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                 +  R+    ++   +  +C  PD VT+ +L+
Sbjct: 512 RGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLM 548



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 134/318 (42%), Gaps = 54/318 (16%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           + L V  Y LN       V ++N++   L K   +   + L  ++   G  PD  T+  +
Sbjct: 437 QRLLVKGYHLN-------VQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTI 489

Query: 132 INCF-----------------------CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
           I                           +  R+    +VL  + ++C  PD VT+ +L+ 
Sbjct: 490 ICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMD 549

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
                + +  A  +F  +   G   +V  Y  +I+GLC+      A++LFEEM + N   
Sbjct: 550 GYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKN--- 606

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
                P+ +TY+++ID LCK              + + L +M  +     +Q    ++  
Sbjct: 607 ---MFPNIVTYTSLIDALCK--------NHHLERAIALLKEMKEH----GIQPDVYSYTI 651

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+DGLCK  +L+ A+E+FQ L   G   NV  Y  +I  LC  G  DE         L  
Sbjct: 652 LLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEA------LDLQX 705

Query: 349 RLNSTGLFPDLYTYNILI 366
           ++   G  PD  T++I+I
Sbjct: 706 KMEDKGCMPDAVTFDIII 723



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 100/251 (39%), Gaps = 32/251 (12%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P    F  ++  L          +LF K    G   D+ T N L+N  C   H   A ++
Sbjct: 61  PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSV 120

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF-PL 276
              +            P+AIT +T+I GLC                F    K A YF   
Sbjct: 121 LANILKRG------YHPNAITLNTLIKGLC----------------FRGEIKKALYFHDQ 158

Query: 277 VRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
           V  Q   LN   +  LI+GLCK  + K    L + L    + P+VV YN +I  LC +  
Sbjct: 159 VVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKL 218

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           + +         L+  +   G+ P++ TYN L+  FC +G +   F +   +      PD
Sbjct: 219 LGDACD------LYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPD 272

Query: 394 AVTFTSLIKIL 404
             TF +LI  L
Sbjct: 273 VCTFNTLIDAL 283



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 20/217 (9%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD  TY  L++ +  +  + H   V   + +   TP+   +T +I  LC +  + EA +L
Sbjct: 539 PDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSL 598

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F +++      ++ TY +LI+ LC+  H   A+ L +EM     E G+  +PD  +Y+ +
Sbjct: 599 FEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMK----EHGI--QPDVYSYTIL 652

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN-FLCLIDGLCKISKLKI 301
           +DGLCK   S    G           K  F   LV+   L +  +  +I+ LCK      
Sbjct: 653 LDGLCK---SGRLEG----------AKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDE 699

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           A +L   +   G MP+ VT++I+I  L    + D+ +
Sbjct: 700 ALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAE 736



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 1/153 (0%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T +EA+ +F+ M + +   P + ++  L   L K  H +  ++L K +   G+ PD Y+Y
Sbjct: 591 TVDEAMSLFEEMKH-KNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSY 649

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            IL++  CK GR+     +  R+L   +  +   +T++I +LC      EA  L  K+  
Sbjct: 650 TILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMED 709

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            GC  D  T++ +I  L        A  +  EM
Sbjct: 710 KGCMPDAVTFDIIIWALFEKDENDKAEKILXEM 742


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 169/331 (51%), Gaps = 24/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F  ML  RP  P V  F  L G + + +  D V+SL++++    +  D Y++ I
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI CFC   ++       G+I +    PD VTF +L+  LC E R+ EA  LF ++    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V T+ TL+NGLCR G  + A+ L + M     E G+  +P  ITY TI+DG+CK  
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMM----EDGL--QPTQITYGTIVDGMCKIG 233

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            + + L          + +++   P V +      +  +ID LCK  +   A+ LF  + 
Sbjct: 234 DTVSALDL-----LRKMEEISHIIPNVVI------YSAIIDSLCKDGRHSDAQNLFTEMQ 282

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P++ TYN +I G C+ G+  + +       L + +    + PD+ TYN LIN F 
Sbjct: 283 EKGIFPDLFTYNSMIVGFCSSGRWSDAEQ------LLQEMLERKISPDVVTYNALINAFV 336

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G+      ++  +LP    P+ +T++S+I
Sbjct: 337 KEGKFFEAEELYDEMLPRGIIPNTITYSSMI 367



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 152/321 (47%), Gaps = 19/321 (5%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS- 142
           R   P V ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+  
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 143 --HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
             H F ++    + C +P+ +TF +LI   C   RI +   L  ++   G   D  TYNT
Sbjct: 379 AEHMFYLMAT--KGC-SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+G    G    AL+L +EM +       +C PD +T  T++DGLC      + L    
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFK 489

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           +   S  +  A + P   V+     +  LI GL    K   A EL++ +P  G++P+ +T
Sbjct: 490 VMQKSKKDLDASH-PFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTIT 548

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+ +I GLC   ++DE         +F  + S    P++ T+  LIN +CK GRV  G  
Sbjct: 549 YSSMIDGLCKQSRLDEATQ------MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLE 602

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +F  +       +A+T+ +LI
Sbjct: 603 LFCEMGRRGIVANAITYITLI 623



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 158/363 (43%), Gaps = 76/363 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  ++ +   L K   +    +LF  +   G+FPD +TYN +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 148 LGRILRSCFTPDAVTF-----------------------------------TSLIKDLCA 172
           L  +L    +PD VT+                                   +S+I   C 
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           ++R+  A  +F  +   GC  ++ T+NTLI+G C        + L  EM     E G+V 
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMT----ETGLVA 428

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL---CL 289
             D  TY+T+I G         +L     A+   L +M           LC + +    L
Sbjct: 429 --DTTTYNTLIHGF--------YLVGDLNAALDLLQEMI-------SSGLCPDIVTCDTL 471

Query: 290 IDGLCKISKLKIARELFQ-----------SLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           +DGLC   KLK A E+F+           S P  G+ P+V TYNILI GL N+G+  E +
Sbjct: 472 LDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAE 531

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  L++ +   G+ PD  TY+ +I+  CK  R+     +F  +    F+P+ VTFT
Sbjct: 532 E------LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFT 585

Query: 399 SLI 401
           +LI
Sbjct: 586 TLI 588



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 143/334 (42%), Gaps = 70/334 (20%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           Y++  +   P + +FN L       K  D  + L   +  TGL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF--------- 189
           G ++    +L  ++ S   PD VT  +L+  LC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 190 --GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G E DV TYN LI+GL   G  + A  L+EEM +     G+V  PD ITYS++IDGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH----RGIV--PDTITYSSMIDGLC 557

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K+                                               S+L  A ++F 
Sbjct: 558 KQ-----------------------------------------------SRLDEATQMFD 570

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           S+      PNVVT+  LI G C  G++D+         LF  +   G+  +  TY  LI 
Sbjct: 571 SMGSKSFSPNVVTFTTLINGYCKAGRVDDG------LELFCEMGRRGIVANAITYITLIC 624

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            F K+G ++    IF  ++ S   PD +T  +++
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 6/160 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++NIL   L     +     L++ +   G+ PD  TY+ +I+  CK  R+     
Sbjct: 508 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 567

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +    F+P+ VTFT+LI   C   R+ +   LF ++   G   +  TY TLI G  
Sbjct: 568 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFR 627

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           + G+   AL++F+EM +     GV   PD IT   ++ GL
Sbjct: 628 KVGNINGALDIFQEMISS----GVY--PDTITIRNMLTGL 661



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD M   +   P V +F  L     K    D  L LF  +   G+  +  TY  
Sbjct: 563 DEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           LI  F K+G ++    +   ++ S   PD +T  +++  L ++  +  A A+  KL++
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQM 679


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 195/382 (51%), Gaps = 37/382 (9%)

Query: 27  ENEPSYPTT----TATLRLTVKDRASLEQ--FLKERCK-SSGEGDITSITPNEALCVFDY 79
           E+  S P      T ++R T+  ++S +   F  ER K  SG  +I  +  ++A+ +F Y
Sbjct: 9   ESSSSVPAARLFCTRSIRHTLAKKSSGKAGGFGGERLKLQSGFHEIKGL--DDAIDLFGY 66

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  RP  P V  F  L G + + +  D V+SL +++ +  +  + Y++ ILI CFC   
Sbjct: 67  MVRSRP-LPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCSCS 125

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++       G+I +  F P  VTF++L+  LC E R+ EA   F ++    C+ +V  + 
Sbjct: 126 KLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI----CKPNVIAFT 181

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TL+NGLCR G  + A+ L + M     E G+  +P+ ITY TI+DG+CK   +       
Sbjct: 182 TLMNGLCREGRVVEAVALLDRMV----EDGL--QPNQITYGTIVDGMCKMGDTV------ 229

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
                SALN +     + R++   + +  +IDGL K  +   A+ LF  +   G+ PN+ 
Sbjct: 230 -----SALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLF 284

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TYN +I G C+ G+  E +       L + +    + PD+ T+++LIN   K G+     
Sbjct: 285 TYNCMINGFCSSGRWSEAQR------LLREMFERKMSPDVVTFSVLINALVKEGKFFEAE 338

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            ++  +LP    P+ +T+ S+I
Sbjct: 339 ELYNEMLPRGIIPNTITYNSMI 360



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 155/318 (48%), Gaps = 13/318 (4%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +F++L   L K   +     L+  +   G+ P+  TYN +I+ F K  R+  
Sbjct: 312 RKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDA 371

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   +     +PD +TF+ LI   C   R+ +   L  ++   G   +  TY TLI+
Sbjct: 372 AERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIH 431

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C+ G+   AL+L +EM +       VC P+ +T +T++DGLC      + L    +  
Sbjct: 432 GFCQLGNLNAALDLLQEMISSG-----VC-PNVVTCNTLLDGLCNNGKLKDALEMFKVMQ 485

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            S ++  A + P   V+     +  LI GL    K   A EL++ +P  GL+P+ +TYN 
Sbjct: 486 KSKMDLDASH-PFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNS 544

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +I GLC   ++DE         +F  + S G  PD+ T+  LIN +CK+GRV  G  +F 
Sbjct: 545 VIDGLCKQSRLDEATQ------MFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFC 598

Query: 384 RILPSCFTPDAVTFTSLI 401
            +       +A+T+ +LI
Sbjct: 599 EMGRRGIVANAITYRTLI 616



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 165/363 (45%), Gaps = 46/363 (12%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +   M  +   +P V  ++ +   L K        +LF  +   G+ P+ +TYN +I
Sbjct: 231 ALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMI 290

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N FC  GR S    +L  +     +PD VTF+ LI  L  E +  EA  L+ ++   G  
Sbjct: 291 NGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGII 350

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----- 247
            +  TYN++I+G  +      A  +F  MA         C PD IT+S +IDG C     
Sbjct: 351 PNTITYNSMIDGFSKQNRLDAAERMFYLMATKG------CSPDVITFSILIDGYCGAKRV 404

Query: 248 -----------KEAGSANFLGFSCM-ASFSALNKMAFYFPLVRVQC---LCLNFL---CL 289
                      +    AN + ++ +   F  L  +     L++      +C N +    L
Sbjct: 405 DDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTL 464

Query: 290 IDGLCKISKLKIARELFQ-----------SLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           +DGLC   KLK A E+F+           S P   + P+V TYNILI GL N+G+  E +
Sbjct: 465 LDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAE 524

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  L++ +   GL PD  TYN +I+  CK  R+     +F  +    F+PD VTFT
Sbjct: 525 E------LYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFT 578

Query: 399 SLI 401
           +LI
Sbjct: 579 TLI 581



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 144/305 (47%), Gaps = 36/305 (11%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           Y++  +   P V +F+IL       K  D  + L   ++  GL  +  TY  LI+ FC++
Sbjct: 377 YLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQL 436

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL----- 193
           G ++    +L  ++ S   P+ VT  +L+  LC   ++ +A  +F  ++    +L     
Sbjct: 437 GNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHP 496

Query: 194 ------DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
                 DV TYN LI GL   G    A  L+EEM +     G+V  PD ITY+++IDGLC
Sbjct: 497 FNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPH----RGLV--PDTITYNSVIDGLC 550

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K++             F ++    F   +V        F  LI+G CK+ ++    E+F 
Sbjct: 551 KQSRLD-----EATQMFDSMGSKGFSPDVV-------TFTTLINGYCKVGRVGDGLEVFC 598

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY-NILI 366
            + R G++ N +TY  LI G C  G ++          +F+ + S+G++PD  T  N+L 
Sbjct: 599 EMGRRGIVANAITYRTLIHGFCQVGNIN------GALDIFQEMISSGVYPDTITIRNMLT 652

Query: 367 NCFCK 371
             + K
Sbjct: 653 GLWSK 657



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 1/109 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD M   +   P V +F  L     K       L +F  +   G+  +  TY  
Sbjct: 556 DEATQMFDSM-GSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRT 614

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           LI+ FC++G ++    +   ++ S   PD +T  +++  L ++  +  A
Sbjct: 615 LIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 663


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 178/373 (47%), Gaps = 35/373 (9%)

Query: 29  EPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRP 88
            PS+  +++T         S  QFL +  +++   D+       AL  +  M+ M+P  P
Sbjct: 33  HPSH--SSSTFSFVSDSDTSRAQFL-DSMRNAKSVDV-------ALDFYHKMVTMKP-FP 81

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
            V  FN+LF  +AK KHY T +SL K ++  G+ P  +T NI+INC C++     GF VL
Sbjct: 82  CVKDFNLLFSIVAKMKHYTTAISLIKHMSYIGVKPTVHTLNIVINCLCRLSHAVFGFSVL 141

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
           G + +    P  VTF +++  LC E  + +A      L+  G E D +T   + NGLC+ 
Sbjct: 142 GLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIRFVDHLKDMGYESDSYTCGAITNGLCKV 201

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
           GH+  AL+  ++M   N      C  D   YS ++DGLCK+      + F  +  FS + 
Sbjct: 202 GHSSAALSYLKKMEEKN------CNLDVTAYSGVVDGLCKDG-----MVFEALNLFSQMT 250

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
                     +Q     + CLI GLC   + K A  L  ++ R G+MP+V T+N++    
Sbjct: 251 GKG-------IQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRF 303

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
              G +   K       +F  +   G+  D+ TY  +I   C + ++     +F  ++  
Sbjct: 304 FKTGMISRAKS------IFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISK 357

Query: 389 CFTPDAVTFTSLI 401
              P+ VT+TSLI
Sbjct: 358 GCLPNIVTYTSLI 370



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 159/359 (44%), Gaps = 36/359 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +F  M   +  +P + ++N L   L     +     L   +   G+ PD  T+N++
Sbjct: 241 EALNLFSQMTG-KGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVI 299

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
              F K G +S    +   ++      D VT+TS+I   C  +++ +A  +F  +   GC
Sbjct: 300 AGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGC 359

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE-- 249
             ++ TY +LI+G C T +   A+    EM N NG      +P+ +T+ST+I G+CK   
Sbjct: 360 LPNIVTYTSLIHGWCETKNMNKAMYFLGEMVN-NG-----LDPNVVTWSTLIGGVCKAGK 413

Query: 250 --AGSANFLGF----------SCMASFSALNKMAFYFPLVRV--QCLCLNF-------LC 288
             A    FL            +C      L K  F+   + +  +   +N+         
Sbjct: 414 PVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNI 473

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           ++DG+C   KL  A ELF  L   G+  +VVTYNI+I+GLC +G +D+ +       L  
Sbjct: 474 ILDGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAED------LLM 527

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           ++   G  P+  TYN+ +    +  ++S        +    F  DA T   LI     N
Sbjct: 528 KMEENGCPPNECTYNVFVQGLLRRYQISKSTKYLMFMKDKGFQADATTTKFLINYFSAN 586


>gi|147742776|gb|ABQ50556.1| hypothetical protein [Brassica rapa]
          Length = 348

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/317 (34%), Positives = 167/317 (52%), Gaps = 28/317 (8%)

Query: 59  SSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL 118
           SSG   I  I  ++A+ +F  M+  RP  P +  F+ LF  +AKTK Y+ VLSL K++ L
Sbjct: 54  SSG---IADIKKDDAVDLFQSMIRSRPL-PSIIDFSRLFSAVAKTKQYELVLSLCKQMEL 109

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
            G+    YT +I+INCFC+  ++   F VLG+IL+  + PD VTF++L+  LC E R+ E
Sbjct: 110 QGIAHSIYTLSIVINCFCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGRVSE 169

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A  +  ++       ++ T NTL+NGLC       A  L + M     E G  C+PD  T
Sbjct: 170 AVVIVDRMVEMKVRPNLVTLNTLVNGLCLKDQVSEAEALVDRMV----EHG--CQPDQFT 223

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y  I++ +CK   + + L          L KM      V+ Q +  N   +ID LCK   
Sbjct: 224 YGPILNRICKSGNTVSALDL--------LRKME--DKKVKPQVVTYNM--IIDSLCKNGN 271

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
              A  LF  + R G+  +V+TYN LI G CN G+ D+         L + + +  + P+
Sbjct: 272 YDEALSLFNEMEREGIKADVITYNSLIGGFCNAGRWDDGAQ------LLRDMITRNITPN 325

Query: 359 LYTYNILINCFCKIGRV 375
           + T++ LI+CF K G++
Sbjct: 326 VVTFSALIDCFVKEGKL 342



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 7/113 (6%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L  G+  I K   A +LFQS+ R+  +P+++ ++ L   +       +TK YE V  L K
Sbjct: 53  LSSGIADIKK-DDAVDLFQSMIRSRPLPSIIDFSRLFSAVA------KTKQYELVLSLCK 105

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++   G+   +YT +I+INCFC+  ++   F + G+IL   + PD VTF++L+
Sbjct: 106 QMELQGIAHSIYTLSIVINCFCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLV 158



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           +  +P V ++N++   L K  +YD  LSLF  +   G+  D  TYN LI  FC  GR   
Sbjct: 250 KKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGGFCNAGRWDD 309

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177
           G  +L  ++    TP+ VTF++LI     E +++
Sbjct: 310 GAQLLRDMITRNITPNVVTFSALIDCFVKEGKLI 343



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 22/169 (13%)

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF--YFPLVRVQCLCLNFLCLIDGLCK 295
           T S +I+  C+       LGF+    FS L K+    Y P        + F  L++GLC 
Sbjct: 118 TLSIVINCFCRRRK----LGFA----FSVLGKILKLGYEPDT------VTFSTLVNGLCL 163

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
             ++  A  +   +    + PN+VT N L+ GLC   Q+ E +       L  R+   G 
Sbjct: 164 EGRVSEAVVIVDRMVEMKVRPNLVTLNTLVNGLCLKDQVSEAEA------LVDRMVEHGC 217

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            PD +TY  ++N  CK G   S   +  ++      P  VT+  +I  L
Sbjct: 218 QPDQFTYGPILNRICKSGNTVSALDLLRKMEDKKVKPQVVTYNMIIDSL 266



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 1/142 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + D M+     +P   ++  +   + K+ +  + L L +++    + P   TYN+
Sbjct: 203 SEAEALVDRMVE-HGCQPDQFTYGPILNRICKSGNTVSALDLLRKMEDKKVKPQVVTYNM 261

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK G       +   + R     D +T+ SLI   C   R  + A L   +    
Sbjct: 262 IIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGGFCNAGRWDDGAQLLRDMITRN 321

Query: 191 CELDVFTYNTLINGLCRTGHTI 212
              +V T++ LI+   + G  I
Sbjct: 322 ITPNVVTFSALIDCFVKEGKLI 343


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 171/331 (51%), Gaps = 28/331 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F  M+  RP  P V  FN L G + + +  D V+SL++++    +  D Y++NI
Sbjct: 59  EDAIDLFSDMVRSRP-LPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNI 117

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI CFC   ++       G+I +  F PD VTF++L+  LC E R+ EA  LF ++    
Sbjct: 118 LIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM---- 173

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V T+ TL+NGLCR G  + A+ L + M     E G+  +P+ ITY TI+DG+CK  
Sbjct: 174 CRPNVVTFTTLMNGLCREGRVVEAVALLDRMV----EDGL--QPNQITYGTIVDGMCKIG 227

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            + + L          + +M+   P V +      +  +IDGL K  +   A  L+  + 
Sbjct: 228 DTVSALNL-----LRKMEEMSHIKPNVVI------YSAIIDGLWKDGRHSDAHNLYTEMQ 276

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P++ TYN +I G C+ G+  E +       L + +    + P++ TY+ LIN + 
Sbjct: 277 EKGIFPDLFTYNCMIDGFCSSGRWSEAQR------LLQEMLERKINPNVVTYSALINAYV 330

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K  +      ++  +LP    P+ +T+ S+I
Sbjct: 331 KERKFFEAEELYDEMLPRGIIPNTITYNSMI 361



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 160/338 (47%), Gaps = 28/338 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +   ML  R   P V +++ L     K + +     L+  +   G+ P+  TYN 
Sbjct: 301 SEAQRLLQEMLE-RKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNS 359

Query: 131 LINCFCKMGRVS---HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           +I+ FCK  R+    H F V+    + C +PD  TF +LI   C   RI +   L  ++ 
Sbjct: 360 MIDGFCKQNRLDAAEHMFYVMA--TKGC-SPDVFTFNTLIDGYCGAKRIDDGTELLHEMT 416

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G   D  TYNTLI+G C  G    AL+L ++M +       VC PD +T +T++DGLC
Sbjct: 417 ETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSG-----VC-PDIVTCNTLLDGLC 470

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYF----PLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
                 + L       F A+ K         P   V+     +  LI GL    K   A 
Sbjct: 471 DNGKLKDALEM-----FKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAE 525

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           EL++ +P  G++PN +TY+ +I GLC   ++DE         +F  + S    PD+ T+N
Sbjct: 526 ELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQ------MFDSMGSKSFSPDVVTFN 579

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            L++ +CK GRV  G  +F  +       DA+T+ +LI
Sbjct: 580 TLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLI 617



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 170/363 (46%), Gaps = 46/363 (12%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +   M  M   +P V  ++ +   L K   +    +L+  +   G+FPD +TYN +I
Sbjct: 232 ALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMI 291

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + FC  GR S    +L  +L     P+ VT+++LI     E +  EA  L+ ++   G  
Sbjct: 292 DGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGII 351

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK---- 248
            +  TYN++I+G C+      A ++F  MA         C PD  T++T+IDG C     
Sbjct: 352 PNTITYNSMIDGFCKQNRLDAAEHMFYVMATKG------CSPDVFTFNTLIDGYCGAKRI 405

Query: 249 EAGSA---NFLGFSCMASFSALNKMAFYFPLVR--------VQCLCLNFLC--------L 289
           + G+           +A  +  N +   F LV          Q +  + +C        L
Sbjct: 406 DDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTL 465

Query: 290 IDGLCKISKLKIARELFQSLPRA-----------GLMPNVVTYNILIRGLCNDGQMDETK 338
           +DGLC   KLK A E+F+++ ++           G+ P+V TYNILI GL N+G+  E +
Sbjct: 466 LDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAE 525

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  L+K +   G+ P+  TY+ +IN  CK  R+     +F  +    F+PD VTF 
Sbjct: 526 E------LYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFN 579

Query: 399 SLI 401
           +L+
Sbjct: 580 TLV 582



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 6/157 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++NIL   L     +     L+K +   G+ P+  TY+ +IN  CK  R+     
Sbjct: 502 EPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQ 561

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +    F+PD VTF +L+   C   R+ +   LF ++   G   D  TY TLI+G  
Sbjct: 562 MFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFR 621

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
           + G+   AL++F+EM +     GV   PD IT  +++
Sbjct: 622 KVGNINGALDIFQEMISS----GVY--PDTITIRSML 652



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 6/118 (5%)

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
           L L  G  +I  L+ A +LF  + R+  +P+V+ +N L+      G +   +  + V  L
Sbjct: 46  LKLRSGFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLM------GVVVRMERPDLVISL 99

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++++    +  D+Y++NILI CFC   ++      FG+I    F PD VTF++L+  L
Sbjct: 100 YQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGL 157



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD M   +   P V +FN L     K    D  L LF  +   G+  D  TY  
Sbjct: 557 DEATQMFDSM-GSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYIT 615

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           LI+ F K+G ++    +   ++ S   PD +T  S++  L ++  +  A A+   L++
Sbjct: 616 LIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQM 673



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 56/134 (41%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++ +   L K    D    +F  +      PD  T+N L++ +CK GRV  G  +
Sbjct: 538 PNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLEL 597

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + R     DA+T+ +LI        I  A  +F ++   G   D  T  +++  L  
Sbjct: 598 FCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWS 657

Query: 208 TGHTIVALNLFEEM 221
                 A+ + E++
Sbjct: 658 KEELKRAVAMLEDL 671


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 182/394 (46%), Gaps = 75/394 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F  M+  RP  P +  FN L   +AK K +D V+SL +R+    +  D Y+YNI
Sbjct: 62  DDAIGLFGEMVQSRP-LPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI-------------- 176
           LINCFC+  ++     VLG++++  + PD VT +SL+   C   RI              
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 180

Query: 177 ---------------------MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
                                 EA AL  ++   GC+ D+ TY  ++NGLC+ G   +AL
Sbjct: 181 YKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLAL 240

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN-FLGFSCMASFSALNKMAFYF 274
           +L ++M  G        E D + Y+TIIDGLCK     + F  F+ M +      +  Y 
Sbjct: 241 SLLKKMEKGK------IEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYN 294

Query: 275 PLVRVQCLC------------------------LNFLCLIDGLCKISKLKIARELFQSLP 310
            L  + CLC                        + F  LID   K  KL  A +L+  + 
Sbjct: 295 SL--ISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           +  + P++ TY+ LI G C   ++DE KH      +F+ + S   FP++ TYN LI  FC
Sbjct: 353 KRSIDPDIFTYSSLINGFCMHDRLDEAKH------MFELMISKDCFPNVVTYNTLIKGFC 406

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K  RV  G  +F  +       + VT+ +LI+ L
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 170/335 (50%), Gaps = 39/335 (11%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  +N +   L K KH D   +LF ++   G+ PD +TYN LI+C C  GR S    +L 
Sbjct: 255 VVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLS 314

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P+ VTF++LI     E +++EA  L+ ++     + D+FTY++LING C   
Sbjct: 315 NMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 374

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMASFS 265
               A ++FE M + +      C P+ +TY+T+I G CK    E G         M  F 
Sbjct: 375 RLDEAKHMFELMISKD------CFPNVVTYNTLIKGFCKAKRVEEG---------MELFR 419

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            +++       V        +  LI GL +     +A+++F+ +   G+ P+++TY+IL+
Sbjct: 420 EMSQRGLVGNTV-------TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 472

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC  G++      E   ++F+ L  + + PD+YTYNI+I   CK G+V  G+ +F  +
Sbjct: 473 DGLCKYGKL------EKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526

Query: 386 LPSCFTPDAVTFTSLIKIL-------EINSFFRQV 413
                 P+ + +T++I          E ++ FR++
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 133/309 (43%), Gaps = 26/309 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++D M+  R   P + +++ L          D    +F+ +     FP+  TYN L
Sbjct: 343 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  FCK  RV  G  +   + +     + VT+ +LI+ L        A  +F K+   G 
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ TY+ L++GLC+ G    AL +FE +           EPD  TY+ +I+G+CK   
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK------MEPDIYTYNIMIEGMCKAGK 515

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +     C  S   +       P V +      +  +I G C+    + A  LF+ +  
Sbjct: 516 VEDGWDLFCSLSLKGVK------PNVII------YTTMISGFCRKGLKEEADALFREMKE 563

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +P+   YN LIR    DG  D+    E    L K + S G   D  T +++IN    
Sbjct: 564 DGTLPDSGCYNTLIRARLRDG--DKAASAE----LIKEMRSCGFVGDASTISMVINMLHD 617

Query: 372 IGRVSSGFV 380
            GR+   ++
Sbjct: 618 -GRLEKSYL 625



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 121/283 (42%), Gaps = 29/283 (10%)

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
           + ++ + N L+N      ++     + G +++S   P  V F  L+  +    +     +
Sbjct: 47  YREKLSRNALLNL-----KLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVIS 101

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L  +++      D+++YN LIN  CR     +AL +  +M        +  EPD +T S+
Sbjct: 102 LGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMK------LGYEPDIVTLSS 155

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +++G C     ++      +A    + +M +    V        F  LI GL   +K   
Sbjct: 156 LLNGYCHSKRISD-----AVALVDQMVEMGYKPDTV-------TFNTLIHGLFLHNKASE 203

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  L   + + G  P++VTY  ++ GLC  G +D          L K++    +  D+  
Sbjct: 204 AVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDID------LALSLLKKMEKGKIEADVVI 257

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           YN +I+  CK   +   F +F ++      PD  T+ SLI  L
Sbjct: 258 YNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCL 300


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/332 (33%), Positives = 178/332 (53%), Gaps = 25/332 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +++L +F +M+  RP  P +  F+ L   ++K K YD V+ L++++ + G+  +  T NI
Sbjct: 63  DDSLDLFFHMVQCRP-LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+NCFC+  ++S     LG++++    PD VTF SL+   C   RI +A  +F ++   G
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMG 181

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            E +V  YNT+I+GLC++     AL+L   M            PDA+TY+++I GLC   
Sbjct: 182 YEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDG------IRPDAVTYNSLISGLCN-- 233

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            S  +   + M   S + K   Y P V        F  LID   K  ++  A EL++ + 
Sbjct: 234 -SGRWDDATRMV--SCMTKREIY-PDV------FTFNALIDACVKEGRISEAEELYEEMI 283

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R  L P++VTY++LI GLC   ++DE +       +F  + S G FPD+ TY+ILIN +C
Sbjct: 284 RRSLDPDIVTYSLLIYGLCMYSRLDEAEQ------MFGFMVSKGCFPDVVTYSILINGYC 337

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           K  +V  G  +F  +       + VT+T LI+
Sbjct: 338 KSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQ 369



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 169/349 (48%), Gaps = 32/349 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL +FD M+ M    P V  +N +   L K+K  D  L L  R+ + G+ PD  TYN L
Sbjct: 169 DALYMFDRMVEM-GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSL 227

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  C  GR      ++  + +    PD  TF +LI     E RI EA  L+ ++     
Sbjct: 228 ISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSL 287

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + D+ TY+ LI GLC       A  +F  M +        C PD +TYS +I+G CK   
Sbjct: 288 DPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKG------CFPDVVTYSILINGYCKSKK 341

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             + +   C  S   + +              + +  LI G C+  KL +A E+F+ +  
Sbjct: 342 VEHGMKLFCEMSQRGVVRNT------------VTYTVLIQGYCRAGKLNVAEEIFKWMVF 389

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+ PN++TYN+L+ GLC++G++      E   ++   +  +G+  D+ TYNI+I   CK
Sbjct: 390 CGVPPNIITYNVLLHGLCDNGKI------EKALVILADMQKSGMDADIVTYNIIIRGMCK 443

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL-------EINSFFRQV 413
            G V+  + ++  +     TPD  T+T+++  L       E ++ FR++
Sbjct: 444 AGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKM 492



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 19/247 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +++ M+  R   P + ++++L   L      D    +F  +   G FPD  TY+I
Sbjct: 273 SEAEELYEEMIR-RSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSI 331

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN +CK  +V HG  +   + +     + VT+T LI+  C   ++  A  +F  +   G
Sbjct: 332 LINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCG 391

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              ++ TYN L++GLC  G    AL +  +M           + D +TY+ II G+CK  
Sbjct: 392 VPPNIITYNVLLHGLCDNGKIEKALVILADMQKSG------MDADIVTYNIIIRGMCKAG 445

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             A+     C  +   L    +             +  ++ GL K      A  LF+ + 
Sbjct: 446 EVADAWDLYCSLNLKGLTPDIW------------TYTAMMLGLYKKGLRGEADALFRKMK 493

Query: 311 RAGLMPN 317
             G++PN
Sbjct: 494 EDGILPN 500


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 194/414 (46%), Gaps = 74/414 (17%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNEALCVFDYMLN-MRPSRPPVTSFNILFGCLAK---T 103
            LE+ +  R +S       S+  +EAL +FD +L+  RP+   V +FN L   +++   +
Sbjct: 14  ELERVIASRARSG------SLGLDEALKLFDELLHCARPA--SVRAFNQLLTVVSRAGCS 65

Query: 104 KHYDTVLSLFKRLNL---TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 160
              + V+SLF R+     + + P+  TY+ILI CFC+MGR+ HGF   G IL++ +  + 
Sbjct: 66  SASERVVSLFTRMARECSSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNV 125

Query: 161 VTFTSLIKDLCAESRIMEAAA-LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
           +  + L+K LC   R+ EA   L  ++  FGC  DV  YNT+ING  R G    A NLF 
Sbjct: 126 IVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFL 185

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCK---------------------EAGSANFL-- 256
           EM +          P+ +TY+T+IDGLCK                     + G+ N L  
Sbjct: 186 EMMDQG------IPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIH 239

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
           G+     +  + +M        ++  C+ +  L+D LCK  + + AR  F S+ R G+ P
Sbjct: 240 GYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKP 299

Query: 317 NVVTYNILIRGLCNDGQMDETKHY-----------------------------ETVFLLF 347
           +V  Y IL+ G    G + E   +                             E    +F
Sbjct: 300 DVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIF 359

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            ++   GL PD+ ++  LI+  CK+GRV    + F +++    TP+   F+SL+
Sbjct: 360 NKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLV 413



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 146/320 (45%), Gaps = 30/320 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    FNI+F   AK    +  + +F ++   GL PD  ++  LI+  CK+GRV    + 
Sbjct: 334 PNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQ 393

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++    TP+   F+SL+  LC   +  +A  LF ++   G  +D   +NTL+  LC 
Sbjct: 394 FNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCN 453

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC---KEAGSANFLGFSCMASF 264
            G  + A  L + M        V   P+ I+Y+T++ G C   +   +A  L    M S 
Sbjct: 454 EGRVMEAQRLIDLMIR------VGVRPNVISYNTLVAGHCLTGRIDEAAKLL--DVMVS- 504

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           + L    F + +            L+ G CK  ++  A  LF+ +   G+ P V TYN +
Sbjct: 505 NGLKPNEFTYTI------------LLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTI 552

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + GL   G+  E         L+  + ++    D+YTYNI++N  CK   V   F +F R
Sbjct: 553 LHGLFQTGRFSEANE------LYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRR 606

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           +       D+VTF  +I  L
Sbjct: 607 LCSKDPQLDSVTFNIMIGAL 626



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 158/372 (42%), Gaps = 66/372 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  VF  M++ R  +P   ++N L      T  +  V+ + + ++  GL PD  TY +
Sbjct: 213 DRAKGVFQQMID-RGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYAL 271

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK---------------DL----- 170
           L++  CK GR     +    + R    PD   +  L+                DL     
Sbjct: 272 LLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNG 331

Query: 171 ------------CAESR---IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
                       CA ++   I EA  +F K+R  G   DV ++  LI+ LC+ G    A+
Sbjct: 332 VSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAV 391

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
             F +M N     GV   P+   +S+++ GLC               +     K    F 
Sbjct: 392 LQFNQMINE----GVT--PNIFVFSSLVYGLC---------------TVGKWEKAEELFF 430

Query: 276 LVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
            V  Q +C++   F  L+  LC   ++  A+ L   + R G+ PNV++YN L+ G C  G
Sbjct: 431 EVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTG 490

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           ++DE         L   + S GL P+ +TY IL+  +CK  RV   + +F  +L    TP
Sbjct: 491 RIDEAAK------LLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTP 544

Query: 393 DAVTFTSLIKIL 404
              T+ +++  L
Sbjct: 545 VVATYNTILHGL 556



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 131/332 (39%), Gaps = 60/332 (18%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + D M+ +   RP V S+N L      T   D    L   +   GL P+ +TY IL
Sbjct: 459 EAQRLIDLMIRV-GVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTIL 517

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +  +CK  RV   + +   +L    TP   T+ +++  L    R  EA  L+  +     
Sbjct: 518 LRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRT 577

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + D++TYN ++NGLC+      A  +F  + + + +       D++T++ +I  L K   
Sbjct: 578 KCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQL------DSVTFNIMIGALLKGGR 631

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +                                               A +LF ++  
Sbjct: 632 KED-----------------------------------------------AMDLFATISA 644

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL+P+VVTY ++   L  +G + E         LF  +  +G  P+ +  N L+     
Sbjct: 645 YGLVPDVVTYRLIAENLIEEGSLGEFDG------LFSAMEKSGTAPNSHMLNALVRRLLH 698

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
            G +S   V   ++    F+ +A T + LI +
Sbjct: 699 RGDISRAGVYLYKLDEKNFSLEASTTSMLISL 730



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%)

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           L  A +LF  L       +V  +N L+  +   G    ++   ++F    R  S+ + P+
Sbjct: 30  LDEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPN 89

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             TY+ILI CFC++GR+  GF  FG IL + +  + +  + L+K L
Sbjct: 90  ACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGL 135



 Score = 45.1 bits (105), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 1/150 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F  + +  P    VT FNI+ G L K    +  + LF  ++  GL PD  TY +
Sbjct: 598 DEAFKMFRRLCSKDPQLDSVT-FNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRL 656

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +     + G +     +   + +S   P++    +L++ L     I  A     KL    
Sbjct: 657 IAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRAGVYLYKLDEKN 716

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEE 220
             L+  T + LI+   R  +   A +L E+
Sbjct: 717 FSLEASTTSMLISLYSRGEYQPHAKSLPEK 746


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 178/338 (52%), Gaps = 27/338 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           ++ +  ++A+ +F  M+  RP  P +  F+ L   +AK   +D V+SL +++   G+  +
Sbjct: 57  LSELKLDDAVALFGEMVKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHN 115

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            YTY+ILINCFC+  ++     VLG++++  + P+ VT +SL+   C   RI EA AL  
Sbjct: 116 HYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVD 175

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTII 243
           ++ V G + +  T+NTLI+GL        A+ L + M A G       C+PD +TY  ++
Sbjct: 176 QMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKG-------CQPDLVTYGVVV 228

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           +GLCK   +          +F  LNKM       +++   L +  +IDGLCK   +  A 
Sbjct: 229 NGLCKRGDTD--------LAFILLNKM----EQGKLEPGVLIYTTIIDGLCKNKHMDDAL 276

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            LF+ +   G+ PNVVTY+ LI  LCN G+  +         L   +    + PD++T++
Sbjct: 277 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR------LLSDMIERKINPDVFTFS 330

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            LI+ F K G++     ++  ++     P  VT++SLI
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLI 368



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 155/315 (49%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V  +  +   L K KH D  L+LFK +   G+ P+  TY+ LI+C C  GR S    
Sbjct: 253 EPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 312

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++     PD  TF++LI     E +++EA  L+ ++     +  + TY++LING C
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 372

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A  +FE M + +      C PD ++YST+I G CK            M  F  
Sbjct: 373 MHDRLDEAKQMFEFMVSKH------CFPDVVSYSTLIKGFCKAKRVD-----EGMELFRE 421

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +++       V        +  LI GL +     +A+E+F+ +   G+ PN++TYN L+ 
Sbjct: 422 MSQRGLVGNTV-------TYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLD 474

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC +G++      E   ++F+ L  + + P +YTYNI+I   CK G+V  G+ +F  + 
Sbjct: 475 GLCKNGKL------EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLS 528

Query: 387 PSCFTPDAVTFTSLI 401
                PD V + ++I
Sbjct: 529 LKGVKPDVVAYNTMI 543



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 159/332 (47%), Gaps = 25/332 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F  M   +  RP V +++ L  CL     +     L   +    + PD +T++ 
Sbjct: 273 DDALNLFKEM-ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F K G++     +   +++    P  VT++SLI   C   R+ EA  +F  +    
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 391

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  DV +Y+TLI G C+       + LF EM+    + G+V   + +TY+T+I GL    
Sbjct: 392 CFPDVVSYSTLIKGFCKAKRVDEGMELFREMS----QRGLV--GNTVTYTTLIQGL---- 441

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
               F    C  +     +M        V    + +  L+DGLCK  KL+ A  +F+ L 
Sbjct: 442 ----FQAGDCDMAQEIFKEMVSD----GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 493

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R+ + P + TYNI+I G+C  G++++       + LF  L+  G+ PD+  YN +I+ FC
Sbjct: 494 RSKMEPTIYTYNIMIEGMCKAGKVEDG------WDLFCNLSLKGVKPDVVAYNTMISGFC 547

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + G       +F  +      P++  + +LI+
Sbjct: 548 RKGSKEEADALFKEMKEDGTLPNSGCYNTLIR 579



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 130/309 (42%), Gaps = 26/309 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++D M+  R   P + +++ L          D    +F+ +     FPD  +Y+ L
Sbjct: 344 EAEKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTL 402

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  FCK  RV  G  +   + +     + VT+T+LI+ L        A  +F ++   G 
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             ++ TYNTL++GLC+ G    A+ +FE +           EP   TY+ +I+G+CK   
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK------MEPTIYTYNIMIEGMCKAGK 516

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +     C  S             V+   +  N   +I G C+    + A  LF+ +  
Sbjct: 517 VEDGWDLFCNLSLKG----------VKPDVVAYN--TMISGFCRKGSKEEADALFKEMKE 564

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +PN   YN LIR    DG  + +        L K + S G   D  T  ++ N    
Sbjct: 565 DGTLPNSGCYNTLIRARLRDGDREASAE------LIKEMRSCGFAGDASTIGLVTNMLHD 618

Query: 372 IGRVSSGFV 380
            GR+   F+
Sbjct: 619 -GRLDKSFL 626



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 123/294 (41%), Gaps = 25/294 (8%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
           S F R   +G     Y   +  N   ++ ++     + G +++S   P  + F+ L+  +
Sbjct: 33  SFFWRRAFSGKTSYDYREKLSRNGLSEL-KLDDAVALFGEMVKSRPFPSIIEFSKLLSAI 91

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
              ++     +L  +++  G   + +TY+ LIN  CR     +AL +  +M        +
Sbjct: 92  AKMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMK------L 145

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
             EP+ +T S++++G C             ++   AL    F   +   Q   + F  LI
Sbjct: 146 GYEPNIVTLSSLLNGYCHSKR---------ISEAVALVDQMF---VTGYQPNTVTFNTLI 193

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
            GL   +K   A  L   +   G  P++VTY +++ GLC  G  D        F+L  ++
Sbjct: 194 HGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD------LAFILLNKM 247

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               L P +  Y  +I+  CK   +     +F  +      P+ VT++SLI  L
Sbjct: 248 EQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 166/317 (52%), Gaps = 30/317 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++ L   L K    D    LF+++      PD  T+  L++  CK  R+     V
Sbjct: 299 PDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQV 358

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +     TP+ +T++SLI  LC   ++ +A  +F ++ V G E +V TYN+LI+G C 
Sbjct: 359 LETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCM 418

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASF 264
           T     AL L EEM A G       C PD ITY+T+IDGLCK   A  AN L F  M   
Sbjct: 419 TNGVDSALLLMEEMTATG-------CLPDIITYNTLIDGLCKTGRAPEANRL-FGDM--- 467

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
               K  F  P V      + + CLI G CK+ ++ +AR LF  + +  ++P+VVT++ L
Sbjct: 468 ----KAKFCNPDV------ITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTL 517

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + G CN G +D+ +       L + + ++   PD+YTY  L++ FCK+GR+     +  R
Sbjct: 518 VEGYCNAGLVDDAER------LLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKR 571

Query: 385 ILPSCFTPDAVTFTSLI 401
           +      P+ VT+T+LI
Sbjct: 572 MAKRGCQPNVVTYTALI 588



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 181/388 (46%), Gaps = 79/388 (20%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
             DY  +M   +  +T + I+   L K        + F ++   G  P+ +TYN+LIN F
Sbjct: 113 ALDYFRSMECEKNVIT-WTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGF 171

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK+ +V   +++L  +  S   P+ VT++++I   C ++++  A  LF ++   GC  ++
Sbjct: 172 CKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNL 231

Query: 196 FTYNTLINGLCR-----------------------------------TGHTIVALNLFEE 220
            TYNTL++GLCR                                   TG   +AL +FE+
Sbjct: 232 VTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFED 291

Query: 221 MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC--------------MASFSA 266
            +NG+      C PD + YST+I GLCK    A  L  +C              + +F+A
Sbjct: 292 NSNGD------CPPDVVAYSTLIAGLCK----AGRLDEACKLFEKMRENSCEPDVVTFTA 341

Query: 267 L-NKMAFYFPLVRVQCL------------CLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
           L + +     L   Q +             + +  LIDGLCK  +++ A+E+F+ +   G
Sbjct: 342 LMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRG 401

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           + PNVVTYN LI G C       T   ++  LL + + +TG  PD+ TYN LI+  CK G
Sbjct: 402 IEPNVVTYNSLIHGFCM------TNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTG 455

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           R      +FG +      PD +T++ LI
Sbjct: 456 RAPEANRLFGDMKAKFCNPDVITYSCLI 483



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 149/334 (44%), Gaps = 26/334 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  VF  M+ +R   P V ++N L      T   D+ L L + +  TG  PD  TYN L
Sbjct: 389 DAQEVFKRMI-VRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTL 447

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK GR      + G +      PD +T++ LI   C   RI  A  LF  +     
Sbjct: 448 IDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAV 507

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV T++TL+ G C  G    A  L EEM   +      C PD  TY++++DG CK   
Sbjct: 508 LPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASD------CSPDVYTYTSLVDGFCKVG- 560

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                    + +   L +MA        Q   + +  LID  C+  K  +A  L + +  
Sbjct: 561 -------RMVEARRVLKRMAKRG----CQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVG 609

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN-STGLFPDLYTYNILINCFC 370
            G+ PNV+TY  LI G C  G ++E +       + +RL        D++ Y ++++  C
Sbjct: 610 NGVQPNVITYRSLIGGFCGTGDLEEARK------ILERLERDENCKADMFAYRVMMDGLC 663

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + GR+S+   +   I  S   P    + +LI+ L
Sbjct: 664 RTGRMSAALELLEAIKQSGTPPRHDIYVALIRGL 697



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 148/335 (44%), Gaps = 33/335 (9%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P+ AL  F +    +     V ++N LF  L + +  D    + K     G+ P+ +TY 
Sbjct: 4   PDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYA 63

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           ++I   CK G +     +L  +  S   PDA  +  +I  LC      +A   F   R  
Sbjct: 64  VVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYF---RSM 120

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            CE +V T+  +I+GLC+      A   F +M       G V  P+  TY+ +I+G CK 
Sbjct: 121 ECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKK----GTV--PNEWTYNVLINGFCK- 173

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELF 306
                            +++       ++   L  N   +  +I G C+ +K+  A +LF
Sbjct: 174 --------------VHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLF 219

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           + +   G MPN+VTYN L+ GLC +G MDE       + L   +   GL PD ++Y+ L+
Sbjct: 220 RQMVENGCMPNLVTYNTLLSGLCRNGLMDE------AYELLDEMRERGLQPDKFSYDTLM 273

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              CK G++     +F         PD V +++LI
Sbjct: 274 AGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLI 308



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 132/299 (44%), Gaps = 22/299 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++ L G   K +  D   +LF  +    + PD  T++ L+  +C  G V     +
Sbjct: 474 PDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERL 533

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++ S  +PD  T+TSL+   C   R++EA  +  ++   GC+ +V TY  LI+  CR
Sbjct: 534 LEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCR 593

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G   VA  L EEM  GNG      +P+ ITY ++I G C   G+ +           A 
Sbjct: 594 AGKPTVAYRLLEEMV-GNG-----VQPNVITYRSLIGGFC---GTGDL--------EEAR 636

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             +         +     +  ++DGLC+  ++  A EL +++ ++G  P    Y  LIRG
Sbjct: 637 KILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRG 696

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           LC   ++ +         L ++       P+   Y  +I    + GR      +   +L
Sbjct: 697 LCQGKELGKAMEVLEEMTLSRKSR-----PNAEAYEAVIQELAREGRHEEANALADELL 750



 Score = 44.7 bits (104), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 2/143 (1%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL-TGLFPDRYTYNILINCFCKMGRVSHGF 145
           +P V ++  L G    T   +    + +RL        D + Y ++++  C+ GR+S   
Sbjct: 613 QPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAAL 672

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF-GCELDVFTYNTLING 204
            +L  I +S   P    + +LI+ LC    + +A  +  ++ +      +   Y  +I  
Sbjct: 673 ELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQE 732

Query: 205 LCRTGHTIVALNLFEEMANGNGE 227
           L R G    A  L +E+    G+
Sbjct: 733 LAREGRHEEANALADELLGNKGQ 755



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           + G   NV TYN L   L    ++DET H      + K     G+ P+++TY ++I   C
Sbjct: 17  QQGFDHNVYTYNRLFEALLRARRIDETCH------ILKNGWPPGITPNVFTYAVVIQGLC 70

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K G +     +   +  S   PDA  +  +I  L
Sbjct: 71  KSGDLDKACELLEEMRESGPVPDAAIYNFVIHAL 104


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 173/359 (48%), Gaps = 46/359 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A+ +F+ ML MRP  PP   FN +   L K + + T +SL K L+  G+  D  T NI
Sbjct: 51  NDAVALFNRMLLMRPP-PPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNI 109

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC +G+++  F VL  IL+  + PD +T T+LIK LC    + +A      +    
Sbjct: 110 LINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALE 169

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +LD  +Y TLINGLC+ G T  A+ L   +   +       +PD + Y+ IID LCK  
Sbjct: 170 FQLDRISYGTLINGLCKIGETKAAIQLMRNLEERS------IKPDVVMYNIIIDSLCKN- 222

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCL--------CL------------------ 284
                +G +C   +S +N    Y  +V    L        CL                  
Sbjct: 223 ---KLVGEACNL-YSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPD 278

Query: 285 --NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
              F  LID L K  K+K A+ +   + +A + P+VVTYN L+ G      ++E KH + 
Sbjct: 279 VYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYF---LVNEVKHAKY 335

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           V   F  +  +G+ P + +Y I+I+  CK   V     +F  +      P+ +TF SLI
Sbjct: 336 V---FNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLI 391



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 156/327 (47%), Gaps = 36/327 (11%)

Query: 81  LNMRPSRPPVTSFNIL------FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           +N +   P V ++  L       GCL +       ++L   + L  + PD YT++ILI+ 
Sbjct: 235 MNAKQIYPNVVTYTTLIYGFCIMGCLIEA------VALLNEMKLKNINPDVYTFSILIDA 288

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
             K G++    +VL  ++++   PD VT+ SL+      + +  A  +F  +   G    
Sbjct: 289 LGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPG 348

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           V +Y  +I+GLC+T     A++LFEEM + N        P+ IT++++IDGLCK    A 
Sbjct: 349 VQSYTIMIDGLCKTKMVDEAISLFEEMKHKN------VIPNTITFNSLIDGLCKSGRIAY 402

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                    +  ++KM     L  V    + +  LID LCK   L  A  LF+ +    +
Sbjct: 403 V--------WDLVDKMRDRSQLADV----ITYSSLIDALCKNCHLDQAIALFKKMITQEI 450

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            P++ TY ILI GLC  G++   +       +F+ L   G   D+ TY ++I+ FCK G 
Sbjct: 451 QPDMYTYTILIDGLCKGGRLKIAQE------VFQHLLIKGYHLDIRTYTVMISGFCKAGL 504

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLI 401
                 +  ++  +   P+A+TF  +I
Sbjct: 505 FDEALALLSKMEDNGCIPNAITFDIII 531



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 145/321 (45%), Gaps = 24/321 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L  R  +P V  +NI+   L K K      +L+  +N   ++P+  TY  LI  FC MG 
Sbjct: 200 LEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGC 259

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     +L  +      PD  TF+ LI  L  E ++  A  +   +     + DV TYN+
Sbjct: 260 LIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNS 319

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           L++G         A  +F  MA      GV   P   +Y+ +IDGLCK       +    
Sbjct: 320 LVDGYFLVNEVKHAKYVFNSMAQS----GVT--PGVQSYTIMIDGLCKTK-----MVDEA 368

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           ++ F  + K     P        + F  LIDGLCK  ++    +L   +     + +V+T
Sbjct: 369 ISLFEEM-KHKNVIPNT------ITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVIT 421

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+ LI  LC +  +D+         LFK++ +  + PD+YTY ILI+  CK GR+     
Sbjct: 422 YSSLIDALCKNCHLDQA------IALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQE 475

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +F  +L   +  D  T+T +I
Sbjct: 476 VFQHLLIKGYHLDIRTYTVMI 496



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 2/148 (1%)

Query: 76  VFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           V+D +  MR       V +++ L   L K  H D  ++LFK++    + PD YTY ILI+
Sbjct: 403 VWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILID 462

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK GR+     V   +L   +  D  T+T +I   C      EA AL +K+   GC  
Sbjct: 463 GLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIP 522

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEM 221
           +  T++ +I  L        A  L  EM
Sbjct: 523 NAITFDIIICALFEKDENDKAEKLLREM 550



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%)

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           + + + T   L K L+  G+  DL T NILINCFC +G+++  F +   IL   + PD +
Sbjct: 81  KMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSVLATILKRGYHPDVI 140

Query: 396 TFTSLIK 402
           T T+LIK
Sbjct: 141 TLTTLIK 147


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 174/365 (47%), Gaps = 44/365 (12%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           F  ML + P+ P V  F  +   L K KHY TV+SLF +L   G+ P+  + +ILINC+C
Sbjct: 59  FHRMLLLNPA-PSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYC 117

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
            +G++   F +  +IL+  + P+ +T T+L+K  C   ++ EA      +   G   +  
Sbjct: 118 HLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQV 177

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           +Y TLINGLC+ G T  AL +  ++       G +   D + YSTIIDGLCK+    +  
Sbjct: 178 SYGTLINGLCKIGETRAALQMLRQIE------GKLVSTDVVMYSTIIDGLCKDKLVNDAY 231

Query: 257 GF-----------------SCMASFSALNKMAFYFPLVRVQCL------CLNFLCLIDGL 293
                              S +  +  + +    F L+R   L         F  L+D L
Sbjct: 232 ELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDAL 291

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL-------- 345
           CK  K+K A+     + + G+MP+VVTY+ L+ G C   ++++ KH  ++ +        
Sbjct: 292 CKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCKIKM 351

Query: 346 ------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
                 LF  +    + PD  TYN LI+  CK GR+S  + +   +  S    D +T+ S
Sbjct: 352 VDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNS 411

Query: 400 LIKIL 404
           LI  L
Sbjct: 412 LIDAL 416



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 153/338 (45%), Gaps = 21/338 (6%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL   D++L +      V S+  L   L K       L + +++    +  D   Y+ +
Sbjct: 159 EALHFHDHVLALGFHFNQV-SYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTI 217

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK   V+  + +   ++    +P  VT  SLI   C   +  EA  L  ++ +   
Sbjct: 218 IDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNI 277

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KE 249
             DV+T+N L++ LC+ G    A +    M       GV+  PD +TYS+++DG C   E
Sbjct: 278 NPDVYTFNILVDALCKEGKIKEAKSGIAVMMKE----GVM--PDVVTYSSLMDGYCLVNE 331

Query: 250 AGSANFL------GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
              A  +      GF  +        + +     R+    + +  LIDGLCK  ++  A 
Sbjct: 332 VNKAKHVYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAW 391

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           EL   +  +G   +++TYN LI  LC +  +D+         L K++   G+  D+YTYN
Sbjct: 392 ELVDEMRDSGQPADIITYNSLIDALCKNHHVDKA------IALVKKIKDQGIQLDMYTYN 445

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ILI+  CK GR+    VIF  +L   +     T+T +I
Sbjct: 446 ILIDGLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMI 483



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 144/320 (45%), Gaps = 53/320 (16%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  ++  M+  R S P V + N L         +     L + + L  + PD YT+NI
Sbjct: 228 NDAYELYSEMITKRIS-PTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNI 286

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL--------------------IKDL 170
           L++  CK G++      +  +++    PD VT++SL                    I   
Sbjct: 287 LVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGF 346

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C    + +A +LF ++R      D  TYN+LI+GLC++G    A  L +EM +       
Sbjct: 347 CKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSG----- 401

Query: 231 VCEP-DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---F 286
             +P D ITY+++ID LCK                  ++K       ++ Q + L+   +
Sbjct: 402 --QPADIITYNSLIDALCKN---------------HHVDKAIALVKKIKDQGIQLDMYTY 444

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LIDGLCK  +LK A+ +FQ L   G    V TY I+I GLC +G ++E    ET   L
Sbjct: 445 NILIDGLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEA---ET---L 498

Query: 347 FKRLNSTGLFPDLYTYNILI 366
             ++   G  PD  T   +I
Sbjct: 499 LSKMEDNGCVPDAVTCETII 518



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 10/191 (5%)

Query: 40  RLTVKDRASLEQFLKERCKSSGEGDITSITPNEALC-------VFDYMLNMRPSRPP--V 90
           ++ + D+A L  F + RC+      +T  +  + LC        ++ +  MR S  P  +
Sbjct: 348 KIKMVDKA-LSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADI 406

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            ++N L   L K  H D  ++L K++   G+  D YTYNILI+  CK GR+    V+   
Sbjct: 407 ITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQD 466

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +L   +     T+T +I  LC E  + EA  L +K+   GC  D  T  T+I  L     
Sbjct: 467 LLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRALFENDK 526

Query: 211 TIVALNLFEEM 221
              A  L  EM
Sbjct: 527 NERAEKLLREM 537


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 172/348 (49%), Gaps = 29/348 (8%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           +ER +S    ++  I  ++A  +F  ML  RP  P +  F  +   +AK   +D V+ LF
Sbjct: 584 RERLRS----ELHCIKFDDAFGLFCEMLQSRPI-PSIVDFTRVLTAIAKMNKFDIVIYLF 638

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
            ++   G+  D Y++ ILI+CFC+  R S    +LG++++  F P  VT  SL+   C  
Sbjct: 639 HKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQG 698

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
           +R  EA +L   +   G E +V  YNT+INGLC+      AL +F  M       G+V  
Sbjct: 699 NRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKK----GIV-- 752

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
            DA+TY+T+I GLC                ++   ++       ++    + F  LID  
Sbjct: 753 ADAVTYNTLISGLCNS------------GRWTDAARLLRDMVKRKIDPNVIFFTALIDTF 800

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
            K   L  A+ L++ + R  + PN++TYN LI G C  G++ + KH      +F  + S 
Sbjct: 801 VKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKH------MFDLMVSK 854

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G FPD+ TYN LI  FCK  RV  G  +F  +       DA T+ +LI
Sbjct: 855 GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLI 902



 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 168/339 (49%), Gaps = 24/339 (7%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           G + SI   +AL +F  M+  +P  P V  F  L   +A  + Y+TV+   +++ L G+ 
Sbjct: 39  GFLHSIRFEDALDLFLEMVQSQP-LPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGIS 97

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
            D Y++ ILI+CFC+  R+S    +LG++++  + P  VTF SL+   C  +RI +A +L
Sbjct: 98  HDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSL 157

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
              +   G E +V  YNTLI+ LC+ G   +AL L  EM    G        D +TY+T+
Sbjct: 158 VASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEK-KGRLA----ADLVTYNTL 212

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           + GLC                +    ++       R+      F  LID   K   L  A
Sbjct: 213 LTGLCYS------------GEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEA 260

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
           +EL++ + ++ + PN VTYN LI GLC  G++   K        F  + S G FP++ TY
Sbjct: 261 QELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKK------TFDLMASKGCFPNVVTY 314

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N LIN FCK  RV  G  +F R+       D  T+ +LI
Sbjct: 315 NTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLI 353



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 161/343 (46%), Gaps = 25/343 (7%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
             EA+ + D M  +    P V  +N +   L K +  +  L +F  +   G+  D  TYN 
Sbjct: 702  QEAVSLVDSMAEL-GLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNT 760

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            LI+  C  GR +    +L  +++    P+ + FT+LI     E  ++EA  L+ ++    
Sbjct: 761  LISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRS 820

Query: 191  CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
               ++ TYN+LING C  G    A ++F+ M +        C PD +TY+T+I G CK  
Sbjct: 821  VHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKG------CFPDVVTYNTLITGFCKSK 874

Query: 251  GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
               + +   C  +   L   AF +              LI G C+  KL +A+++F  + 
Sbjct: 875  RVEDGMKLFCEMTHQGLVGDAFTYN------------TLIHGYCQAGKLNVAQKVFNRMV 922

Query: 311  RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
              G+ P++VTYNIL+  LCN+G++      E   ++ + L    +  D+ TYNI+I   C
Sbjct: 923  DCGVPPDIVTYNILLDCLCNNGKI------EKALVMVEDLQKNQMDVDIITYNIIIQGMC 976

Query: 371  KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
            +  +V   + +F  +       DA+ + ++I  L  N   R+ 
Sbjct: 977  RNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREA 1019



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 146/318 (45%), Gaps = 29/318 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYTYNILINCFCKMGRVSHGF 145
            P V  +N L  CL K    +  L L   +   G L  D  TYN L+   C  G      
Sbjct: 167 EPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAA 226

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +L  + +    PD  TFT+LI     +  + EA  L+ ++       +  TYN+LINGL
Sbjct: 227 RILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGL 286

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C  G    A   F+ MA+        C P+ +TY+T+I+G CK              S  
Sbjct: 287 CMHGRLYHAKKTFDLMASKG------CFPNVVTYNTLINGFCK--------------SRR 326

Query: 266 ALNKMAFYFPLVRVQCLCLNFL--CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
             + M  +  + R   +   F    LI G C++ KL++A+++F  +   G+ P+++T+ I
Sbjct: 327 VEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCI 386

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L+ GLC +G++       +  + F  + S   +  +  YNI+I+  CK  +V   + +F 
Sbjct: 387 LLHGLCVNGEIG------SAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFC 440

Query: 384 RILPSCFTPDAVTFTSLI 401
           R+      PDA T+T +I
Sbjct: 441 RLPVEGVKPDARTYTIMI 458



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/278 (32%), Positives = 132/278 (47%), Gaps = 30/278 (10%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P V +F  L     K  + D    L+K++  + + P+  TYN LIN  C  GR
Sbjct: 232 MTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGR 291

Query: 141 VSHGFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           + H       +  + CF P+ VT+ +LI   C   R+ +   LF ++   G   D FTYN
Sbjct: 292 LYHAKKTFDLMASKGCF-PNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYN 350

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLG 257
           TLI+G C+ G   VA ++F  M +     GV   PD IT+  ++ GLC   E GSA    
Sbjct: 351 TLIHGYCQVGKLRVAKDIFSWMVS----CGVT--PDIITHCILLHGLCVNGEIGSA---- 400

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
              M  F+ +     Y  +V        +  +I GLCK  K++ A ELF  LP  G+ P+
Sbjct: 401 ---MVKFNDMRSGEKYLGIVA-------YNIMIHGLCKADKVEEAWELFCRLPVEGVKPD 450

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
             TY I+I GLC +G   E         LF+R+   G+
Sbjct: 451 ARTYTIMILGLCKNGPRREADE------LFRRMKEDGI 482



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 116/270 (42%), Gaps = 37/270 (13%)

Query: 84   RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS- 142
            R   P V  F  L     K  +     +L+K +    + P+  TYN LIN FC  GR+  
Sbjct: 784  RKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGD 843

Query: 143  --HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
              H F ++  + + CF PD VT+ +LI   C   R+ +   LF ++   G   D FTYNT
Sbjct: 844  AKHMFDLM--VSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNT 900

Query: 201  LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
            LI+G C+ G   VA  +F  M     + GV   PD +TY+ ++D LC        L    
Sbjct: 901  LIHGYCQAGKLNVAQKVFNRMV----DCGV--PPDIVTYNILLDCLCNNGKIEKALVMVE 954

Query: 261  MASFSALNKMAFYFPLVRVQCLCLN------------------------FLCLIDGLCKI 296
                + ++     + ++ +Q +C N                        ++ +I GLC+ 
Sbjct: 955  DLQKNQMDVDIITYNII-IQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRN 1013

Query: 297  SKLKIARELFQSLPRAGLMPNVVTYNILIR 326
               + A +L   +   G MP+   Y+  +R
Sbjct: 1014 GLRREADKLCTRMKEDGFMPSERIYDETLR 1043



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 115/256 (44%), Gaps = 22/256 (8%)

Query: 8   NGRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVK--DRASLEQFLKERCKSS-GEGD 64
           +G  R A R+ R  T       P   T TA +   VK  +    ++  K+  +SS G   
Sbjct: 219 SGEWRQAARILRDMTKR--RINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNT 276

Query: 65  ITSITPNEALCV----------FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFK 114
           +T  +    LC+          FD M + +   P V ++N L     K++  +  + LF+
Sbjct: 277 VTYNSLINGLCMHGRLYHAKKTFDLMAS-KGCFPNVVTYNTLINGFCKSRRVEDGMKLFQ 335

Query: 115 RLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174
           R+   GL  D +TYN LI+ +C++G++     +   ++    TPD +T   L+  LC   
Sbjct: 336 RMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNG 395

Query: 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234
            I  A   F  +R     L +  YN +I+GLC+      A  LF  +       GV  +P
Sbjct: 396 EIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVE----GV--KP 449

Query: 235 DAITYSTIIDGLCKEA 250
           DA TY+ +I GLCK  
Sbjct: 450 DARTYTIMILGLCKNG 465



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            N A  VF+ M++     P + ++NIL  CL      +  L + + L    +  D  TYNI
Sbjct: 912  NVAQKVFNRMVDCGVP-PDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNI 970

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            +I   C+  +V   + +   + R     DA+ + ++I  LC      EA  L T+++  G
Sbjct: 971  IIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDG 1030


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 188/414 (45%), Gaps = 83/414 (20%)

Query: 56  RCKSSGEGDITSITPN--------EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYD 107
           R  SSG GD   I  N        +A+ +F  M+  RP  P +  FN L   +AK K +D
Sbjct: 44  RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRP-LPSIFEFNKLLSAIAKMKKFD 102

Query: 108 TVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR-------------- 153
            V+SL +++   G+  + YTYNILINCFC+  ++S    +LG++++              
Sbjct: 103 LVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162

Query: 154 ---------------------SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
                                  + PD +TFT+LI  L   ++  EA AL  ++   GC+
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 222

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            ++ TY  ++NGLC+ G   +A NL  +M           E + + YST+ID LCK    
Sbjct: 223 PNLVTYGVVVNGLCKRGDIDLAFNLLNKME------AAKIEANVVIYSTVIDSLCKYRHE 276

Query: 253 ANFLG-FSCMASFSALNKMAFYFPLVRVQCLC------------------------LNFL 287
            + L  F+ M +      +  Y  L  + CLC                        + F 
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSL--ISCLCNYERWSDASRLLSDMIERKINPNVVTFN 334

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LID   K  KL  A +L+  + +  + P++ TY+ LI G C   ++DE KH      +F
Sbjct: 335 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH------MF 388

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + + S   FP++ TYN LIN FCK  R+  G  +F  +       + VT+T+LI
Sbjct: 389 ELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 154/312 (49%), Gaps = 24/312 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  ++ +   L K +H D  L+LF  +   G+ P+  TY+ LI+C C   R S    +L 
Sbjct: 260 VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLS 319

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P+ VTF +LI     E +++EA  L+ ++     + D+FTY++LING C   
Sbjct: 320 DMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 379

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A ++FE M + +      C P+ +TY+T+I+G CK       +       F  +++
Sbjct: 380 RLDEAKHMFELMISKD------CFPNVVTYNTLINGFCKAKRIDEGVEL-----FREMSQ 428

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                  V        +  LI G  +      A+ +F+ +   G+ PN++TYN L+ GLC
Sbjct: 429 RGLVGNTV-------TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC 481

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
            +G++      E   ++F+ L  + + P +YTYNI+I   CK G+V  G+ +F  +    
Sbjct: 482 KNGKL------EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 535

Query: 390 FTPDAVTFTSLI 401
             PD + + ++I
Sbjct: 536 VKPDVIIYNTMI 547



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 160/328 (48%), Gaps = 29/328 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F  M N +  RP V +++ L  CL   + +     L   +    + P+  T+N 
Sbjct: 277 DDALNLFTEMEN-KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNA 335

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F K G++     +   +++    PD  T++SLI   C   R+ EA  +F  +    
Sbjct: 336 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 395

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CK 248
           C  +V TYNTLING C+       + LF EM+    + G+V   + +TY+T+I G    +
Sbjct: 396 CFPNVVTYNTLINGFCKAKRIDEGVELFREMS----QRGLV--GNTVTYTTLIHGFFQAR 449

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           +  +A  + F  M S               V    + +  L+DGLCK  KL+ A  +F+ 
Sbjct: 450 DCDNAQMV-FKQMVSDG-------------VHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 495

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L R+ + P + TYNI+I G+C  G++++       + LF  L+  G+ PD+  YN +I+ 
Sbjct: 496 LQRSKMEPTIYTYNIMIEGMCKAGKVEDG------WDLFCSLSLKGVKPDVIIYNTMISG 549

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVT 396
           FC+ G       +F ++      PD+ T
Sbjct: 550 FCRKGLKEEADALFRKMREDGPLPDSGT 577



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 118/275 (42%), Gaps = 25/275 (9%)

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           IL N    M ++     + G +++S   P    F  L+  +    +     +L  K++  
Sbjct: 56  ILRNGLHSM-KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRL 114

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +++TYN LIN  CR     +AL L  +M        +  EP  +T S++++G C  
Sbjct: 115 GISHNLYTYNILINCFCRRSQISLALALLGKMMK------LGYEPSIVTLSSLLNGYCHG 168

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              ++      +A    + +M  Y P        + F  LI GL   +K   A  L   +
Sbjct: 169 KRISD-----AVALVDQMVEMG-YRPDT------ITFTTLIHGLFLHNKASEAVALVDRM 216

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            + G  PN+VTY +++ GLC  G +D        F L  ++ +  +  ++  Y+ +I+  
Sbjct: 217 VQRGCQPNLVTYGVVVNGLCKRGDID------LAFNLLNKMEAAKIEANVVIYSTVIDSL 270

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           CK         +F  +      P+ +T++SLI  L
Sbjct: 271 CKYRHEDDALNLFTEMENKGVRPNVITYSSLISCL 305


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 185/415 (44%), Gaps = 82/415 (19%)

Query: 55  ERCKSSGEGDITSITPN---------EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKH 105
           ER  +S  GD   I  N         +A+ +F  M+  RP  P +  FN L   +AK   
Sbjct: 40  ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPF-PSIVEFNKLLSAVAKMNK 98

Query: 106 YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           ++ V+SL +++   G+  D YTY+I INCFC+  ++S    VL ++++  + PD VT +S
Sbjct: 99  FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158

Query: 166 LIKDLCAESRI-----------------------------------MEAAALFTKLRVFG 190
           L+   C   RI                                    EA AL  ++   G
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+ D+ TY T++NGLC+ G   +AL+L ++M  G        E D + Y+TIIDGLCK  
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGK------IEADVVIYNTIIDGLCKYK 272

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLC------------------------LNF 286
              + L          +    F +  + + CLC                        + F
Sbjct: 273 HMDDALNLFTEMDNKGIRPDVFTYSSL-ISCLCNYGRWSDASRLLSDMIERKINPNVVTF 331

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LID   K  KL  A +L+  + +  + P++ TY+ LI G C   ++DE KH      +
Sbjct: 332 SALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH------M 385

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           F+ + S   FP++ TY+ LI  FCK  RV  G  +F  +       + VT+T+LI
Sbjct: 386 FELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 162/316 (51%), Gaps = 32/316 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  +N +   L K KH D  L+LF  ++  G+ PD +TY+ LI+C C  GR S    +L 
Sbjct: 258 VVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLS 317

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P+ VTF++LI     E +++EA  L+ ++     + D+FTY++LING C   
Sbjct: 318 DMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 377

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMASFS 265
               A ++FE M + +      C P+ +TYST+I G CK    E G         M  F 
Sbjct: 378 RLDEAKHMFELMISKD------CFPNVVTYSTLIKGFCKAKRVEEG---------MELFR 422

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            +++       V        +  LI G  +      A+ +F+ +   G+ PN++TYNIL+
Sbjct: 423 EMSQRGLVGNTV-------TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILL 475

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC +G++ +        ++F+ L  + + PD+YTYNI+I   CK G+V  G+ +F  +
Sbjct: 476 DGLCKNGKLAKA------MVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL 529

Query: 386 LPSCFTPDAVTFTSLI 401
                +P+ + + ++I
Sbjct: 530 SLKGVSPNVIAYNTMI 545



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 130/309 (42%), Gaps = 26/309 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++D M+  R   P + +++ L          D    +F+ +     FP+  TY+ L
Sbjct: 346 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  FCK  RV  G  +   + +     + VT+T+LI           A  +F ++   G 
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 464

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             ++ TYN L++GLC+ G    A+ +FE +           EPD  TY+ +I+G+CK   
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRS------TMEPDIYTYNIMIEGMCKAGK 518

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +     C  S   ++      P V      + +  +I G C+    + A  L + +  
Sbjct: 519 VEDGWELFCNLSLKGVS------PNV------IAYNTMISGFCRKGSKEEADSLLKKMKE 566

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +PN  TYN LIR    DG  + +        L K + S G   D  T  ++ N    
Sbjct: 567 DGPLPNSGTYNTLIRARLRDGDREASAE------LIKEMRSCGFAGDASTIGLVTNMLHD 620

Query: 372 IGRVSSGFV 380
            GR+   F+
Sbjct: 621 -GRLDKSFL 628



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 117/275 (42%), Gaps = 24/275 (8%)

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           IL N    + +V     + G +++S   P  V F  L+  +   ++     +L  +++  
Sbjct: 53  ILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   D++TY+  IN  CR     +AL +  +M        +  EPD +T S++++G C  
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMK------LGYEPDIVTLSSLLNGYCHS 166

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              ++      +A    + +M  Y P          F  LI GL   +K   A  L   +
Sbjct: 167 KRISD-----AVALVDQMVEMG-YKPDT------FTFTTLIHGLFLHNKASEAVALVDQM 214

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            + G  P++VTY  ++ GLC  G +D          L K++    +  D+  YN +I+  
Sbjct: 215 VQRGCQPDLVTYGTVVNGLCKRGDID------LALSLLKKMEKGKIEADVVIYNTIIDGL 268

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           CK   +     +F  +      PD  T++SLI  L
Sbjct: 269 CKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCL 303



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  VF  M+++    P + ++NIL   L K       + +F+ L  + + PD YTYNI
Sbjct: 450 DNAQMVFKQMVSV-GVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNI 508

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I   CK G+V  G+ +   +     +P+ + + ++I   C +    EA +L  K++  G
Sbjct: 509 MIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDG 568

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
              +  TYNTLI    R G    +  L +EM
Sbjct: 569 PLPNSGTYNTLIRARLRDGDREASAELIKEM 599


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 120/411 (29%), Positives = 190/411 (46%), Gaps = 78/411 (18%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           +E+   +G   ++ +  ++A+ +F  M+  RP  P +  F+ L   +AK   +D V+SL 
Sbjct: 49  REKLSRNG---LSELKLDDAVALFGEMVKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLG 104

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           +++   G+  + YTY+IL+NCFC+  ++     VLG++++  + PD VT +SL+   C  
Sbjct: 105 EQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHG 164

Query: 174 SRI-----------------------------------MEAAALFTKLRVFGCELDVFTY 198
            RI                                    EA AL  ++   GC+ D+FTY
Sbjct: 165 KRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTY 224

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-EAGSANFLG 257
            T++NGLC+ G   +AL+L ++M  G        E + + Y+TIIDGLCK +     F  
Sbjct: 225 GTVVNGLCKRGDIDLALSLLKKMEKGK------IEANVVIYNTIIDGLCKYKHMDDAFDL 278

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLC------------------------LNFLCLIDGL 293
           F+ M +      +  Y  L  + CLC                        + F  LID  
Sbjct: 279 FNKMETKGIKPDVFTYNSL--ISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAF 336

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
            K  KL  A +LF  + +  + PN+VTYN LI G C   ++DE +       +F  + S 
Sbjct: 337 AKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQ------IFTLMVSK 390

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              PD+ TYN LI  FCK  RV  G  +F  +       + VT+ +LI+ L
Sbjct: 391 DCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 441



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 165/335 (49%), Gaps = 39/335 (11%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  +N +   L K KH D    LF ++   G+ PD +TYN LI+C C  GR S    +L 
Sbjct: 256 VVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLS 315

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P+ VTF SLI     E +++EA  LF ++     + ++ TYN+LING C   
Sbjct: 316 DMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 375

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMASFS 265
               A  +F  M + +      C PD +TY+T+I G CK    E G         M  F 
Sbjct: 376 RLDEAQQIFTLMVSKD------CLPDVVTYNTLIKGFCKAKRVEEG---------MELFR 420

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            +++       V        +  LI GL +     +A+++F+ +   G+ P+++TY+IL+
Sbjct: 421 EMSQRGLVGNTV-------TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 473

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC  G++      E   ++F+ L  + + P++YTYNI+I   CK G+V  G+ +F  +
Sbjct: 474 DGLCKYGKL------EKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSL 527

Query: 386 LPSCFTPDAVTFTSLIKIL-------EINSFFRQV 413
                 P+ + +T++I          E ++ FR++
Sbjct: 528 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 562



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 137/335 (40%), Gaps = 66/335 (19%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +FN L    AK         LF  +    + P+  TYN LIN FC   R+  
Sbjct: 320 RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDE 379

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   ++     PD VT+ +LIK  C   R+ E   LF ++   G   +  TYNTLI 
Sbjct: 380 AQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 439

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GL + G   +A  +F++M +     GV   PD ITYS ++DGLCK               
Sbjct: 440 GLFQAGDCDMAQKIFKKMVSD----GV--PPDIITYSILLDGLCK--------------- 478

Query: 264 FSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           +  L K    F  ++   +  N   +  +I+G+CK  K++   +LF SL   G+ PNV+ 
Sbjct: 479 YGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVII 538

Query: 321 Y-----------------------------------NILIRGLCNDGQMDETKHYETVFL 345
           Y                                   N LIR    DG  D+    E    
Sbjct: 539 YTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDG--DKAASAE---- 592

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           L K + S G   D  T +++IN     GR+   ++
Sbjct: 593 LIKEMRSCGFVGDASTISMVINMLHD-GRLEKSYL 626



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 125/297 (42%), Gaps = 29/297 (9%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           LS F R   +G     Y   +  N   ++ ++     + G +++S   P  + F+ L+  
Sbjct: 32  LSFFWRRAFSGKTSYDYREKLSRNGLSEL-KLDDAVALFGEMVKSRPFPSIIEFSKLLSA 90

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
           +   ++     +L  +++  G   + +TY+ L+N  CR     +AL +  +M        
Sbjct: 91  IAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMK------ 144

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA--FYFPLVRVQCLCLNFL 287
           +  EPD +T S++++G C         G     + + +++M    Y P        + F 
Sbjct: 145 LGYEPDIVTLSSLLNGYCH--------GKRISEAVALVDQMVEMGYKPDT------VTFN 190

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI GL   +K   A  L   +   G  P++ TY  ++ GLC  G +D          L 
Sbjct: 191 TLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID------LALSLL 244

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K++    +  ++  YN +I+  CK   +   F +F ++      PD  T+ SLI  L
Sbjct: 245 KKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCL 301


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/343 (31%), Positives = 176/343 (51%), Gaps = 45/343 (13%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           P+  FN + G L K K+Y TV+SL K++++ G+  +  T +ILINCFC +G+++  F +L
Sbjct: 9   PIIEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLL 68

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
           G+IL+  + P+ +T+T+L+K LC +  + +      K+     + +  +Y TL+NGLC+T
Sbjct: 69  GKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKT 128

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS---------------- 252
           G T  A+ L   + + +        P+ + YS IIDGLCK+                   
Sbjct: 129 GETRCAIKLLRMIEDRS------TRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIF 182

Query: 253 -----------ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
                      A  L    M +FS L++M     L  +      F  LID LCK  + K 
Sbjct: 183 PNVITYNTLICAFCLAGQLMGAFSLLHEMI----LKNINPDVYTFSILIDALCK--EGKN 236

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A+++F ++ + G+ PNV +YNI+I GLC   ++DE  +      L + +    + PD  T
Sbjct: 237 AKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMN------LLREMLHKNMVPDTVT 290

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           YN LI+  CK GR++S   +   +       D VT+TSL+  L
Sbjct: 291 YNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDAL 333



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 155/325 (47%), Gaps = 26/325 (8%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  R +RP V  ++ +   L K K  +    L+  ++   +FP+  TYN LI  FC  G
Sbjct: 140 MIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAG 199

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++   F +L  ++     PD  TF+ LI  LC E +   A  +F  +   G   +V++YN
Sbjct: 200 QLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYSYN 257

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            +INGLC+      A+NL  EM + N        PD +TY+++IDGLCK           
Sbjct: 258 IMINGLCKCKRVDEAMNLLREMLHKN------MVPDTVTYNSLIDGLCKSG--------R 303

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
             ++ + +N+M        V    + +  L+D LCK   L  A  LF  +   G+ P + 
Sbjct: 304 ITSALNLMNEMHHRGQPADV----VTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMY 359

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY  LI GLC  G++   +       LF+ L   G   D++TY ++I+  CK G      
Sbjct: 360 TYTALIDGLCKGGRLKNAQE------LFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEAL 413

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            I  ++  +   P+AVTF  +I+ L
Sbjct: 414 AIKSKMEDNGCIPNAVTFEIIIRSL 438



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 90/175 (51%), Gaps = 7/175 (4%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F  M+ M  + P V S+NI+   L K K  D  ++L + +    + PD  TYN LI+  
Sbjct: 240 IFHAMVQMGVN-PNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGL 298

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK GR++    ++  +       D VT+TSL+  LC    + +A ALF K++  G +  +
Sbjct: 299 CKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTM 358

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           +TY  LI+GLC+ G    A  LF+ +          C  D  TY+ +I GLCKE 
Sbjct: 359 YTYTALIDGLCKGGRLKNAQELFQHLLVKG------CCIDVWTYTVMISGLCKEG 407



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 78/179 (43%), Gaps = 9/179 (5%)

Query: 43  VKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAK 102
           V D  +    +   CKS   G ITS     AL + + M + R     V ++  L   L K
Sbjct: 285 VPDTVTYNSLIDGLCKS---GRITS-----ALNLMNEM-HHRGQPADVVTYTSLLDALCK 335

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
            ++ D   +LF ++   G+ P  YTY  LI+  CK GR+ +   +   +L      D  T
Sbjct: 336 NQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWT 395

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           +T +I  LC E    EA A+ +K+   GC  +  T+  +I  L        A  L  EM
Sbjct: 396 YTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEM 454



 Score = 39.3 bits (90), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
           LVR     + F  ++  L K+        L + +   G+  N+VT +ILI   C+ GQM 
Sbjct: 3   LVRHTSPIIEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMA 62

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
            +      F L  ++   G  P+  T+  L+   C  G V        +++   F  + V
Sbjct: 63  FS------FSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQV 116

Query: 396 TFTSLI 401
           ++ +L+
Sbjct: 117 SYGTLL 122


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/416 (29%), Positives = 191/416 (45%), Gaps = 74/416 (17%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNEALCVFDYML-NMRPSRPPVTSFNILFGCLAKTK-- 104
            LE+ + +R  S       S+  N+AL +FD ML + RP+   V +FN L   +++ +  
Sbjct: 16  ELERVIADRAHSG------SLGLNDALKLFDEMLTHARPA--SVRAFNQLLTAVSRARCS 67

Query: 105 -HYDTVLSLFKRLNLT---GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF-TPD 159
              + V+SLF R+       + P  +TY ILI CFC+MGR+ HGF   G IL++ +   D
Sbjct: 68  SASELVVSLFNRMIRECSIKVAPSSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVND 127

Query: 160 AVTFTSLIKDLCAESRIMEAAA-LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
            V F+ L+K LC   R+ EA   L  ++  FGC  DVF+Y+ L+ G C       AL L 
Sbjct: 128 TVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELL 187

Query: 219 EEMA-NGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFL----------------- 256
             MA +G+G       P+ +TY+T+IDGLCK    +     F                  
Sbjct: 188 SMMADDGDGSH----TPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCL 243

Query: 257 --GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
             G+  +  +  + +M        +Q  C  +  L+D LCK  +   AR +F S+ R G+
Sbjct: 244 IHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGI 303

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHY-----------------------------ETVFL 345
            PNV  Y IL+ G   +G + E   +                             +    
Sbjct: 304 KPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMH 363

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +F ++    L P++ TY  LI+  CK+GRV    + F +++    TPD   F+SL+
Sbjct: 364 IFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLV 419



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 141/317 (44%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    FNI+F   AK    D  + +F ++    L P+  TY  LI+  CK+GRV    + 
Sbjct: 340 PDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLK 399

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++    TPD   F+SL+  LC   +  +A  LF ++   G  LD   +NTL+  LCR
Sbjct: 400 FNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCR 459

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  + A  L + M        V   PD I+Y+T++DG C                    
Sbjct: 460 EGRVMEAQRLIDLM------LRVGVRPDVISYNTLVDGHC------------LTGRIDEA 501

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K+      + ++   + +  L+ G CK  ++  A  LF+ +   GL P+VVTYN ++ G
Sbjct: 502 AKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHG 561

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           L   G+  E K      L    +NS     ++YTYNI+IN  CK   V   F +F  +  
Sbjct: 562 LFQTGRFSEAKE-----LYLSMINSRTQM-NIYTYNIIINGLCKNNFVDEAFKMFHSLCS 615

Query: 388 SCFTPDAVTFTSLIKIL 404
                D  T   +I  L
Sbjct: 616 KDLQLDIFTANIMIGAL 632



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 36/357 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  VF +M++ +  RP   ++  L         +  V+ + + ++  GL PD Y Y +
Sbjct: 219 DRAKGVFQHMID-KGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAV 277

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK GR +    +   ++R    P+   +  L+     E  + E  +    +   G
Sbjct: 278 LLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNG 337

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
              D   +N +     +      A+++F++M            P+ +TY  +ID LCK  
Sbjct: 338 VSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQR------LSPNIVTYGALIDALCKLG 391

Query: 249 --------------EAGSANFLGFSCMA----SFSALNKMAFYFPLVRVQCLCLN---FL 287
                         E  + +   FS +     +     K    F  V  Q + L+   F 
Sbjct: 392 RVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFN 451

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L+  LC+  ++  A+ L   + R G+ P+V++YN L+ G C  G++DE      V +  
Sbjct: 452 TLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIV-- 509

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               S GL PD  TYN L++ +CK  R+   + +F  +L    TPD VT+ +++  L
Sbjct: 510 ----SIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGL 562



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 129/284 (45%), Gaps = 24/284 (8%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G+ PD  +YN L++  C  GR+     +L  I+     PD VT+ +L+   C   RI +A
Sbjct: 477 GVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDA 536

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
            +LF ++ + G   DV TYNT+++GL +TG    A  L+  M N   +  +       TY
Sbjct: 537 YSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIY------TY 590

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           + II+GLCK     NF+  +     S  +K         +Q        +I  L K  + 
Sbjct: 591 NIIINGLCKN----NFVDEAFKMFHSLCSK--------DLQLDIFTANIMIGALLKGGRK 638

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
           + A +LF ++   GL+P+V TY ++   L  +G ++E         LF  +   G  P+ 
Sbjct: 639 EDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDE------LFSAMEENGTAPNS 692

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
              N L+      G ++       ++    F+ +A T + LI I
Sbjct: 693 RMLNALVRWLLHRGDINRAGAYLSKLDEKNFSLEASTTSMLISI 736



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 128/300 (42%), Gaps = 25/300 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + D ML +   RP V S+N L      T   D    L   +   GL PD+ TYN L
Sbjct: 465 EAQRLIDLMLRV-GVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTL 523

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ +CK  R+   + +   +L    TPD VT+ +++  L    R  EA  L+  +     
Sbjct: 524 LHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRT 583

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           +++++TYN +INGLC+      A  +F  + + + +       D  T + +I  L K  G
Sbjct: 584 QMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQL------DIFTANIMIGALLK--G 635

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                     A+ SA        P V   CL      + + L K   L+   ELF ++  
Sbjct: 636 GRKEDAMDLFATISAYG----LVPDVETYCL------IAENLIKEGSLEELDELFSAMEE 685

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G  PN    N L+R L + G ++    Y        +L+      +  T ++LI+ + +
Sbjct: 686 NGTAPNSRMLNALVRWLLHRGDINRAGAY------LSKLDEKNFSLEASTTSMLISIYSR 739


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 192/387 (49%), Gaps = 41/387 (10%)

Query: 42  TVKDRASLEQFLK--ERCKSSGEGDITSITP-NEALCVFDYMLNMRPSRPPVTSFNILFG 98
           T + R +  +FL+    C       ++S    ++A+ +F++++NM+P  P V  FN + G
Sbjct: 34  TTRLRYAFHKFLRFFSHCPKQNAKILSSFNGIDDAVTLFNHLINMQP-LPSVIQFNTIIG 92

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
            + K KH    +SL K++   G+ P  +T +I INC+C +G +   F VLG +L+  + P
Sbjct: 93  SVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQP 152

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           + +T T+++K LC    + +A      +   G  LD   Y TLINGLC+ G +I A  L 
Sbjct: 153 NNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLL 212

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN----FLGFSCMA------SFSALN 268
           +EM       G V +P+ + Y+ IID  CK+  +      +L    M       ++++L 
Sbjct: 213 QEME------GQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLI 266

Query: 269 ----KMAFYFPLVRVQCLCLN---------FLCLIDGLCKISKLKIARELFQSLPRAGLM 315
               +   +  + ++ C  +N         F  LID  C+  K+  A+ +F  + + G  
Sbjct: 267 RGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQ 326

Query: 316 PNVVTYNILIRGLCNDGQMDET-KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
           P++VT+N LI G C  G + E  K ++TVF         G+ PD+++Y ILI  +CK  R
Sbjct: 327 PDIVTFNTLISGHCLHGNVLEARKLFDTVF-------ERGILPDVWSYTILIIGYCKCKR 379

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +     +F  +       D V ++SLI
Sbjct: 380 IDEAVSLFNEMRCKNMVLDIVLYSSLI 406



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 152/317 (47%), Gaps = 30/317 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P +  +N++     K +       L+ ++   G+ PD  TY  LI  FC+ G+      
Sbjct: 221 KPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQ 280

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  ++     P+  TF  LI   C + +++EA  +F  +   G + D+ T+NTLI+G C
Sbjct: 281 LMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHC 340

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G+ + A  LF+ +     E G++  PD  +Y+ +I G CK           C      
Sbjct: 341 LHGNVLEARKLFDTVF----ERGIL--PDVWSYTILIIGYCK-----------C----KR 379

Query: 267 LNKMAFYFPLVRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +++    F  +R + + L+ +    LIDGLCK  ++  A ELF ++   G  PNV+TYNI
Sbjct: 380 IDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNI 439

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI   C    +D          LFK +   GL P + TYNILIN +CK  R+     +  
Sbjct: 440 LIDAFCKIQDIDMGIE------LFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLS 493

Query: 384 RILPSCFTPDAVTFTSL 400
            +      PD++T+ SL
Sbjct: 494 VMQSKNLAPDSITYNSL 510



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 147/314 (46%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++  L     +T  +  V  L   +    + P+ YT+N+LI+ FC+ G++     +
Sbjct: 257 PDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGM 316

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +++    PD VTF +LI   C    ++EA  LF  +   G   DV++Y  LI G C+
Sbjct: 317 FNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCK 376

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A++LF EM   N         D + YS++IDGLCK +G  ++        FS +
Sbjct: 377 CKRIDEAVSLFNEMRCKNMVL------DIVLYSSLIDGLCK-SGRISY----AWELFSTI 425

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N      P   V    + +  LID  CKI  + +  ELF+ +   GL P V+TYNILI G
Sbjct: 426 NNDG---PPPNV----ITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILING 478

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C   ++ E  +      L   + S  L PD  TYN L +  CK GR+S  + +F  +  
Sbjct: 479 YCKSKRIREAMN------LLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHV 532

Query: 388 SCFTPDAVTFTSLI 401
                D  T+  L+
Sbjct: 533 GGPPVDVATYNVLL 546



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 132/295 (44%), Gaps = 36/295 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN+L     +         +F  +   G  PD  T+N LI+  C  G V     +
Sbjct: 292 PNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKL 351

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      PD  ++T LI   C   RI EA +LF ++R     LD+  Y++LI+GLC+
Sbjct: 352 FDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCK 411

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +G    A  LF  + N +G       P+ ITY+ +ID  CK                  +
Sbjct: 412 SGRISYAWELFSTI-NNDGP-----PPNVITYNILIDAFCK------------------I 447

Query: 268 NKMAFYFPLVRVQC------LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
             +     L ++ C        L +  LI+G CK  +++ A  L   +    L P+ +TY
Sbjct: 448 QDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITY 507

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           N L  GLC  G++ +       + LFK ++  G   D+ TYN+L++ FCK   V+
Sbjct: 508 NSLFDGLCKSGRISDA------WELFKVMHVGGPPVDVATYNVLLDAFCKAQDVA 556



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 114/279 (40%), Gaps = 43/279 (15%)

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +++ C     R+ + F    R    C   +A   +S        + I +A  LF  L   
Sbjct: 26  VVMLCIATTTRLRYAFHKFLRFFSHCPKQNAKILSSF-------NGIDDAVTLFNHLINM 78

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
                V  +NT+I  + +  H  VA++L ++M       GV   P   T S  I+  C  
Sbjct: 79  QPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFK----GVT--PSIFTLSIWINCYCH- 131

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRV------QCLCLNFLCLIDGLCKISKLKIAR 303
                            L +M F F ++ +      Q   +    ++ GLC   +++ A 
Sbjct: 132 -----------------LGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAM 174

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           +   ++   G++ + V Y  LI GLC  G+  +       F L + +    + P++  YN
Sbjct: 175 DFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDA------FQLLQEMEGQVVKPNIVIYN 228

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           ++I+ FCK         ++ +I+     PD +T+TSLI+
Sbjct: 229 MIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIR 267



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 6/107 (5%)

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  LF  L     +P+V+ +N +I      G + + KH      L K++   G+ P ++T
Sbjct: 68  AVTLFNHLINMQPLPSVIQFNTII------GSVVKMKHCPVAISLLKQMVFKGVTPSIFT 121

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            +I INC+C +G +   F + G +L   + P+ +T T+++K L IN 
Sbjct: 122 LSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCING 168


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 182/369 (49%), Gaps = 47/369 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F  M++M P  P +  F  + G +AK ++Y T + L+  +   G+ P   T+NI
Sbjct: 36  DDAVALFHRMVDMHP-LPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFTVTFNI 94

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC MG++   F V+G+IL+    P+ VTFT+L+K  C   ++++A  ++ ++    
Sbjct: 95  LINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARR 154

Query: 191 CELDVFTYNTLINGLCRT--GHTIVALNLFEEMA---------------------NGN-G 226
              D   Y TLINGLC++  G    A+ L ++M                      +GN  
Sbjct: 155 IRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNIN 214

Query: 227 EFGVVCE--------PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
           E  V+C         PD  TYS++I GLC+          S +  F   NK+     L  
Sbjct: 215 EARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVT--SLLNGFCLNNKVDEARELFN 272

Query: 279 V------QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
           V      Q   +N+  L++G C  +K+  AR+LF  +   G  P+ +TY IL+ G C   
Sbjct: 273 VMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLID 332

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           ++DE ++      LF  +   GL PD+++YNILI  +CK  RV     +   +      P
Sbjct: 333 KVDEARN------LFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVP 386

Query: 393 DAVTFTSLI 401
           + +T+ S++
Sbjct: 387 NIITYNSVV 395



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 158/352 (44%), Gaps = 37/352 (10%)

Query: 57  CKSSGEGDITSI--------TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDT 108
           C++    ++TS+          +EA  +F+ M+  R  +  + ++NIL            
Sbjct: 243 CRAGQRKEVTSLLNGFCLNNKVDEARELFNVMIE-RGEQHDIINYNILMNGYCLNNKVGE 301

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
              LF  +   G  PD  TY IL++ +C + +V     +   ++     PD  ++  LIK
Sbjct: 302 ARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIK 361

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
             C   R+ EA  L   + +     ++ TYN++++GLC++G  + A  L +EM      +
Sbjct: 362 GYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEM-----HY 416

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN--- 285
                PD  TY+ +++ LC+           C+        +AF+  L+  +    N   
Sbjct: 417 CCQPPPDVTTYNILLESLCR---------IECVEK-----AIAFFKHLIFERSFAPNVWS 462

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  LI G CK  +L  A  LF  +    L+P++VTYNIL+  L N  Q+D+         
Sbjct: 463 YNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKA------IA 516

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           L  ++   G+ P+L TYNILIN   K GR  +   I   +    + PD  T+
Sbjct: 517 LLVQIVDQGISPNLRTYNILINGLHKGGRPKTAQKISLYLSIRGYHPDVKTY 568



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 139/301 (46%), Gaps = 26/301 (8%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    LF  +   G   D   YNIL+N +C   +V     +   ++     PD +T+T L
Sbjct: 265 DEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTIL 324

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           +   C   ++ EA  LF  +   G   DV++YN LI G C+      A+NL E+M   N 
Sbjct: 325 MHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKN- 383

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY-FPLVRVQCLCLN 285
                  P+ ITY++++DGLCK  G         + ++  +++M +   P   V      
Sbjct: 384 -----LVPNIITYNSVVDGLCKSGG--------ILDAWKLVDEMHYCCQPPPDVT----T 426

Query: 286 FLCLIDGLCKISKLKIARELFQSLP-RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
           +  L++ LC+I  ++ A   F+ L       PNV +YNILI G C + ++DE  +     
Sbjct: 427 YNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAIN----- 481

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            LF  +    L PD+ TYNIL++      ++     +  +I+    +P+  T+  LI  L
Sbjct: 482 -LFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGL 540

Query: 405 E 405
            
Sbjct: 541 H 541



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 114/244 (46%), Gaps = 31/244 (12%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK   +     +  R++     P  V FT ++  +        A  L+T +   G     
Sbjct: 30  CKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFT 89

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            T+N LIN  C  G    A ++  ++     ++G  C P+ +T++T++ G C        
Sbjct: 90  VTFNILINCFCHMGQMDFAFSVMGKIL----KWG--CRPNVVTFTTLMKGFC-------- 135

Query: 256 LGFSCMASFSALNKMAFYFPLV--RVQCLCLNFLCLIDGLC--KISKLKIARELFQSLPR 311
                  +   L+ +  Y  +V  R++   + +  LI+GLC  KI K + A +L Q +  
Sbjct: 136 ------VNDKMLDALYIYDEMVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEE 189

Query: 312 AGLM-PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             L+ PN++ YN ++ GLC DG ++E +      +L  ++   G+FPD++TY+ LI   C
Sbjct: 190 RQLVKPNLIMYNTVVHGLCKDGNINEAR------VLCSKMIVQGIFPDIFTYSSLIYGLC 243

Query: 371 KIGR 374
           + G+
Sbjct: 244 RAGQ 247



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 6/109 (5%)

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK   +  A  LF  +     +P++V +  ++      G + + ++Y T   L+  +   
Sbjct: 30  CKFDSIDDAVALFHRMVDMHPLPSIVEFTKIL------GTIAKMRYYATAIDLYTLMEYK 83

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           G+ P   T+NILINCFC +G++   F + G+IL     P+ VTFT+L+K
Sbjct: 84  GVVPFTVTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMK 132


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/417 (29%), Positives = 186/417 (44%), Gaps = 83/417 (19%)

Query: 56  RCKSSGEGDITSITPN--------EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYD 107
           R  SSG GD   I  N        +A+ +F  M+  RP  P +  FN L   +AK K +D
Sbjct: 6   RAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRP-LPSIVEFNKLLSAIAKMKKFD 64

Query: 108 TVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR-------------- 153
            V+SL +++    +    YTYNILINCFC+  ++S    +LG++++              
Sbjct: 65  VVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 124

Query: 154 ---------------------SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
                                  + PD +TFT+LI  L   ++  EA AL  ++   GC+
Sbjct: 125 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 184

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            ++ TY  ++NGLC+ G T +ALNL  +M           E D + ++TIID LCK    
Sbjct: 185 PNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK------IEADVVIFNTIIDSLCKYRHV 238

Query: 253 ANFLG-FSCMASFSALNKMAFYFPLVRVQCLC------------------------LNFL 287
            + L  F  M +      +  Y  L  + CLC                        + F 
Sbjct: 239 DDALNLFKEMETKGIRPNVVTYSSL--ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFN 296

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LID   K  K   A +L+  + +  + P++ TYN L+ G C   ++D+ K       +F
Sbjct: 297 ALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ------MF 350

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + + S   FPD+ TYN LI  FCK  RV  G  +F  +       D VT+T+LI+ L
Sbjct: 351 EFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 407



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 151/319 (47%), Gaps = 32/319 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
              V  FN +   L K +H D  L+LFK +   G+ P+  TY+ LI+C C  GR S    
Sbjct: 219 EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 278

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++     P+ VTF +LI     E + +EA  L+  +     + D+FTYN+L+NG C
Sbjct: 279 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFC 338

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMA 262
                  A  +FE M + +      C PD +TY+T+I G CK    E G+  F   S   
Sbjct: 339 MHDRLDKAKQMFEFMVSKD------CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRG 392

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
                                + +  LI GL        A+++F+ +   G+ P+++TY+
Sbjct: 393 LVGD----------------TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYS 436

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           IL+ GLCN+G++      E    +F  +  + +  D+Y Y  +I   CK G+V  G+ +F
Sbjct: 437 ILLDGLCNNGKL------EKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLF 490

Query: 383 GRILPSCFTPDAVTFTSLI 401
             +      P+ VT+ ++I
Sbjct: 491 CSLSLKGVKPNVVTYNTMI 509



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 134/309 (43%), Gaps = 26/309 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++D M+  R   P + ++N L          D    +F+ +     FPD  TYN L
Sbjct: 310 EAEKLYDDMIK-RSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 368

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  FCK  RV  G  +   +       D VT+T+LI+ L  +     A  +F ++   G 
Sbjct: 369 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 428

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ TY+ L++GLC  G    AL +F+ M           + D   Y+T+I+G+CK AG
Sbjct: 429 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE------IKLDIYIYTTMIEGMCK-AG 481

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +  G+    S S          L  V+   + +  +I GLC    L+ A  L + +  
Sbjct: 482 KVDD-GWDLFCSLS----------LKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKE 530

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +PN  TYN LIR    DG  D+    E    L + + S     D  T  ++ N    
Sbjct: 531 DGPLPNSGTYNTLIRAHLRDG--DKAASAE----LIREMRSCRFVGDASTIGLVANMLHD 584

Query: 372 IGRVSSGFV 380
            GR+   F+
Sbjct: 585 -GRLDKSFL 592


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 159/317 (50%), Gaps = 27/317 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           PP   F  LFG + K KHY T +SL K     G+ PD +T  I+INC C +     GF V
Sbjct: 5   PPDKDFATLFGVIVKMKHYATAISLIKHTYSLGVKPDVHTLTIVINCLCHLKHTVFGFSV 64

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG + +    P  VTF +LI  LCAE  +  AA     L   G E + +T+ T+INGLC+
Sbjct: 65  LGAMFKIGVEPTVVTFATLINGLCAEGNVGAAARFADSLEDMGYESNSYTHGTIINGLCK 124

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS--FS 265
            G T  A++  E++   N  F ++     I YSTI+D LCK+       G  C+A   FS
Sbjct: 125 VGDTAGAISYLEKIEGRNRGFDLL-----IAYSTIMDSLCKD-------GMLCLALNFFS 172

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            +        LV        +  LI GLC   +   A  L  ++ R G+MPNV T+N+L+
Sbjct: 173 GMTCKGIQPDLVA-------YNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLV 225

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
              C +G++   K   T+      +   G+ PD+ TYN +I+  C + +++    +F  +
Sbjct: 226 DNFCKEGKISRAK---TIMCFMVHV---GVEPDVVTYNSVISGHCLLSQMNDAVKVFELM 279

Query: 386 LPSCFTPDAVTFTSLIK 402
           +     P+ VT++SLI 
Sbjct: 280 IHKGLLPNVVTYSSLIH 296



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 147/303 (48%), Gaps = 35/303 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++N L   L     ++   +L   +   G+ P+  T+N+L++ FCK G++S    
Sbjct: 180 QPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKT 239

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  ++     PD VT+ S+I   C  S++ +A  +F  +   G   +V TY++LI+G C
Sbjct: 240 IMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWC 299

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGF---- 258
           +T +   A+ + +EM N NG        D +T+ST+I G CK    EA    F       
Sbjct: 300 KTRNINKAIFVLDEMVN-NG-----LNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHH 353

Query: 259 ------SCMASFSALNKMAFY------FPLVRVQCLCLNFLC---LIDGLCKISKLKIAR 303
                 +C      L K  F+      F  +    L LN +    ++DG+C   K   AR
Sbjct: 354 QLPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDAR 413

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           ELF  LP  G+  +VV Y  +I+GLC +G +D+ +       L  ++   G  P+ +TYN
Sbjct: 414 ELFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAED------LLMKMEENGCPPNEFTYN 467

Query: 364 ILI 366
           +L+
Sbjct: 468 VLV 470


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 174/354 (49%), Gaps = 34/354 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+++L+M    PP+  FN +   L K  H+   +S  +++ L G+ P+ +T+NI
Sbjct: 34  DDAVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNI 93

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCF  + +++  F ++ +IL+  + PD VT  +L++ LC   ++ EA      +    
Sbjct: 94  LINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKR 153

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             LD  +Y TLINGLC++G T  AL L  ++     E  ++  PD I Y+ IID  CK+ 
Sbjct: 154 FHLDQVSYGTLINGLCKSGETRAALQLLRKI-----EGLLLVRPDVIMYTAIIDSFCKDK 208

Query: 251 GSAN-----------------------FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
              +                         GF  +        +     L  V      F 
Sbjct: 209 LVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFN 268

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LIDGLCK  ++K A  +   + + G+ PNVVTY  L+ G     ++++ KH      +F
Sbjct: 269 ILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKH------VF 322

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             ++  G+ P++++Y+++IN  CK   V     +F  +     TP+ VT++SLI
Sbjct: 323 NTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLI 376



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 148/317 (46%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN L             + L   ++L  + P+ YT+NILI+  CK G V     V
Sbjct: 227 PNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSV 286

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +++    P+ VT+TSL+        + +A  +F  + + G   +V +Y+ +INGLC+
Sbjct: 287 LSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCK 346

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A+ LF+EM   N        P+ +TYS++IDGLCK    ++            +
Sbjct: 347 NKMVDEAVKLFKEMHLKN------MTPNTVTYSSLIDGLCKSGRISDVWDL-----IDEI 395

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N       ++        +  L++GLCK  ++  A  L   +   G+ P++ TY  L+ G
Sbjct: 396 NNRGQPANII-------TYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDG 448

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC +G++ + +       +++ L   G   ++  Y ++IN  CK G       +  ++  
Sbjct: 449 LCKNGRLKDAQR------IYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMED 502

Query: 388 SCFTPDAVTFTSLIKIL 404
           +   PDAVT+ +LI  L
Sbjct: 503 NGCMPDAVTYETLISAL 519



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 158/336 (47%), Gaps = 36/336 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLN-LTGLFPDRYTYNI 130
           EAL   D+++  R     V S+  L   L K+      L L +++  L  + PD   Y  
Sbjct: 141 EALNFHDHVIRKRFHLDQV-SYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTA 199

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+ FCK   V   + +   ++     P+ VTF SLI   C   ++ EA  L  ++ +  
Sbjct: 200 IIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNN 259

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG--LCK 248
              +V+T+N LI+GLC+ G    A ++   M       GV  EP+ +TY++++DG  L K
Sbjct: 260 VNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQ----GV--EPNVVTYTSLMDGYFLVK 313

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIAREL 305
           E                 +NK    F  + ++ +  N   +  +I+GLCK   +  A +L
Sbjct: 314 E-----------------VNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKL 356

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F+ +    + PN VTY+ LI GLC  G++ +      V+ L   +N+ G   ++ TYN L
Sbjct: 357 FKEMHLKNMTPNTVTYSSLIDGLCKSGRISD------VWDLIDEINNRGQPANIITYNSL 410

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +N  CK  +V     +  ++      PD  T+T+L+
Sbjct: 411 LNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLV 446



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 101/183 (55%), Gaps = 13/183 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  VF+  +++R   P V S++++   L K K  D  + LFK ++L  + P+  TY+ 
Sbjct: 316 NKAKHVFN-TISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSS 374

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK GR+S  + ++  I       + +T+ SL+  LC   ++ +A AL TK++  G
Sbjct: 375 LIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEG 434

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT---YSTIIDGLC 247
            + D+ TY TL++GLC+ G    A  +++++         +C+   +    Y+ +I+GLC
Sbjct: 435 IQPDMSTYTTLVDGLCKNGRLKDAQRIYQDL---------LCKGYPLNIRMYTVMINGLC 485

Query: 248 KEA 250
           KE 
Sbjct: 486 KEG 488



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 7/178 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F  M +++   P   +++ L   L K+     V  L   +N  G   +  TYN 
Sbjct: 351 DEAVKLFKEM-HLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNS 409

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  CK  +V     +L ++      PD  T+T+L+  LC   R+ +A  ++  L   G
Sbjct: 410 LLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKG 469

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
             L++  Y  +INGLC+ G    AL+L  +M + NG     C PDA+TY T+I  L K
Sbjct: 470 YPLNIRMYTVMINGLCKEGFFDEALSLLSQMED-NG-----CMPDAVTYETLISALFK 521



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 17/188 (9%)

Query: 51  QFLKERCKSSGEGDITSITPN--------EALC-------VFDYM--LNMRPSRPPVTSF 93
           + + E  K   E  + ++TPN        + LC       V+D +  +N R     + ++
Sbjct: 348 KMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITY 407

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N L   L K    D  ++L  ++   G+ PD  TY  L++  CK GR+     +   +L 
Sbjct: 408 NSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLC 467

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
             +  +   +T +I  LC E    EA +L +++   GC  D  TY TLI+ L +      
Sbjct: 468 KGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGK 527

Query: 214 ALNLFEEM 221
           A+ L  EM
Sbjct: 528 AVKLLREM 535



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 44/74 (59%)

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
           H++      +++   G+ P+++T+NILINCF  + +++  F +  +IL   + PD VT  
Sbjct: 68  HFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVN 127

Query: 399 SLIKILEINSFFRQ 412
           +L++ L +N   ++
Sbjct: 128 TLLRGLCLNGKVKE 141


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 189/383 (49%), Gaps = 38/383 (9%)

Query: 23   SSISENEPSYPTTTATLRLTVKDRASL---EQFLKERCKSSGEGDITSITPNEALCVFDY 79
            SS+ +N P    + +     +  +ASL   E++++++C+         I  N+A+ +FD 
Sbjct: 884  SSLFKNPPQRSGSNSKSE-KIGTKASLSPFERYVRDQCR------FGIIKLNDAIKLFDR 936

Query: 80   MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
             L   P  P   +FN L   +AK  +Y TV  +++++N  G+ PD YT NILI+C C + 
Sbjct: 937  SLCSEPM-PCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLR 995

Query: 140  RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
             V  GF V G  L+  F PDAVT T+L+K +  E+ I +A  LF ++   G   D  TY 
Sbjct: 996  AVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYG 1055

Query: 200  TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-F 258
             LINGLC+   T +A+ L E+M  GN      C+ D  TY  IID LCK+  +   L  F
Sbjct: 1056 ILINGLCKARKTGLAIKLHEKM-KGN------CKGDVFTYGMIIDALCKDGMTTEALDMF 1108

Query: 259  SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
            S M     L  +  Y               L+DGLC+  +LK A E F+ +   G+  +V
Sbjct: 1109 SEMIGAGILPDVVVYS-------------SLMDGLCRFGRLKEALEFFKEMEGRGISADV 1155

Query: 319  VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
             TYN LI GL   G   E   +  + +        G  PD +T+ ILI+  CK G+V   
Sbjct: 1156 YTYNSLIHGLSRAGLWKEVTWFLNLMV------DRGFSPDAFTFTILIDGLCKEGKVGEA 1209

Query: 379  FVIFGRILPSCFTPDAVTFTSLI 401
              I   +      PD +T+ +L+
Sbjct: 1210 QQILELMRHKGKEPDILTYNTLM 1232



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 160/336 (47%), Gaps = 29/336 (8%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
             EAL  F  M   R     V ++N L   L++   +  V      +   G  PD +T+ I
Sbjct: 1137 KEALEFFKEM-EGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTI 1195

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            LI+  CK G+V     +L  +      PD +T+ +L+  LC   ++ +A  LF  L   G
Sbjct: 1196 LIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRG 1255

Query: 191  CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             +L+VF+YN LING C+      A   FEEM           +P  +TY+T+I  LC+  
Sbjct: 1256 IKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKG------LKPSTVTYNTLIGALCQSG 1309

Query: 251  --GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
               +A  L F  M +     K++ Y       C+      L+DGLCK   L+ A +LFQS
Sbjct: 1310 RVRTAQKL-FVEMQTCGQFLKLSTY-------CV------LLDGLCKNGHLEEAMDLFQS 1355

Query: 309  LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
            + +    PN+  ++IL+ G+C  G+++E       +  F  ++  GL PD   YNILIN 
Sbjct: 1356 IKKTEHKPNIEVFSILLDGMCRAGKLEEA------WKQFDEISKNGLEPDTIAYNILING 1409

Query: 369  FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             C  G +S    +  ++      PD++TF  +I+ L
Sbjct: 1410 LCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNL 1445



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 145/326 (44%), Gaps = 27/326 (8%)

Query: 79   YMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
            + LN+   R   P   +F IL   L K         + + +   G  PD  TYN L+N  
Sbjct: 1176 WFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGL 1235

Query: 136  CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            C +G++     +   +       +  ++  LI   C + +I EA   F ++R  G +   
Sbjct: 1236 CLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPST 1295

Query: 196  FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             TYNTLI  LC++G    A  LF EM    G+F  +      TY  ++DGLCK       
Sbjct: 1296 VTYNTLIGALCQSGRVRTAQKLFVEMQTC-GQFLKLS-----TYCVLLDGLCKNGHLE-- 1347

Query: 256  LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                 M  F ++ K   + P + V      F  L+DG+C+  KL+ A + F  + + GL 
Sbjct: 1348 ---EAMDLFQSIKKTE-HKPNIEV------FSILLDGMCRAGKLEEAWKQFDEISKNGLE 1397

Query: 316  PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            P+ + YNILI GLCN G +      E V LL++ +   G  PD  T+N++I    K   +
Sbjct: 1398 PDTIAYNILINGLCNKGMLS-----EAVKLLWQ-MEEKGCLPDSITFNVIIQNLLKENEI 1451

Query: 376  SSGFVIFGRILPSCFTPDAVTFTSLI 401
                 +   +    F+PD    + L+
Sbjct: 1452 HEAIQLLEEMRNRNFSPDEAVTSMLL 1477



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 118/281 (41%), Gaps = 29/281 (10%)

Query: 136  CKMG--RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
            C+ G  +++    +  R L S   P   TF  L+  +           ++ K+   G + 
Sbjct: 920  CRFGIIKLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQP 979

Query: 194  DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
            D++T N LI+  C    ++ A+     +  G  + G   EPDA+T +T++ G+  E G  
Sbjct: 980  DLYTLNILIHCCC----SLRAVGCGFGVFGGFLKRGF--EPDAVTVTTLVKGVWMENGIP 1033

Query: 254  NFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
            + +  F  M     L     Y               LI+GLCK  K  +A +L + + + 
Sbjct: 1034 DAVQLFDEMTKKGLLGDAKTYG-------------ILINGLCKARKTGLAIKLHEKM-KG 1079

Query: 313  GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
                +V TY ++I  LC DG   E         +F  +   G+ PD+  Y+ L++  C+ 
Sbjct: 1080 NCKGDVFTYGMIIDALCKDGMTTEA------LDMFSEMIGAGILPDVVVYSSLMDGLCRF 1133

Query: 373  GRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
            GR+      F  +     + D  T+ SLI  L     +++V
Sbjct: 1134 GRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEV 1174


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/417 (29%), Positives = 186/417 (44%), Gaps = 83/417 (19%)

Query: 56  RCKSSGEGDITSITPN--------EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYD 107
           R  SSG GD   I  N        +A+ +F  M+  RP  P +  FN L   +AK K +D
Sbjct: 44  RAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRP-LPSIVEFNKLLSAIAKMKKFD 102

Query: 108 TVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR-------------- 153
            V+SL +++    +    YTYNILINCFC+  ++S    +LG++++              
Sbjct: 103 VVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162

Query: 154 ---------------------SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
                                  + PD +TFT+LI  L   ++  EA AL  ++   GC+
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 222

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            ++ TY  ++NGLC+ G T +ALNL  +M           E D + ++TIID LCK    
Sbjct: 223 PNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK------IEADVVIFNTIIDSLCKYRHV 276

Query: 253 ANFLG-FSCMASFSALNKMAFYFPLVRVQCLC------------------------LNFL 287
            + L  F  M +      +  Y  L  + CLC                        + F 
Sbjct: 277 DDALNLFKEMETKGIRPNVVTYSSL--ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFN 334

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LID   K  K   A +L+  + +  + P++ TYN L+ G C   ++D+ K       +F
Sbjct: 335 ALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQ------MF 388

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + + S   FPD+ TYN LI  FCK  RV  G  +F  +       D VT+T+LI+ L
Sbjct: 389 EFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 445



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 151/316 (47%), Gaps = 32/316 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  FN +   L K +H D  L+LFK +   G+ P+  TY+ LI+C C  GR S    +L 
Sbjct: 260 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 319

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P+ VTF +LI     E + +EA  L+  +     + D+FTYN+L+NG C   
Sbjct: 320 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHD 379

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMASFS 265
               A  +FE M + +      C PD +TY+T+I G CK    E G+  F   S      
Sbjct: 380 RLDKAKQMFEFMVSKD------CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 433

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                             + +  LI GL        A+++F+ +   G+ P+++TY+IL+
Sbjct: 434 D----------------TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILL 477

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLCN+G++      E    +F  +  + +  D+Y Y  +I   CK G+V  G+ +F  +
Sbjct: 478 DGLCNNGKL------EKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 531

Query: 386 LPSCFTPDAVTFTSLI 401
                 P+ VT+ ++I
Sbjct: 532 SLKGVKPNVVTYNTMI 547



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 134/309 (43%), Gaps = 26/309 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++D M+  R   P + ++N L          D    +F+ +     FPD  TYN L
Sbjct: 348 EAEKLYDDMIK-RSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  FCK  RV  G  +   +       D VT+T+LI+ L  +     A  +F ++   G 
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ TY+ L++GLC  G    AL +F+ M     +       D   Y+T+I+G+CK AG
Sbjct: 467 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKL------DIYIYTTMIEGMCK-AG 519

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +  G+    S S          L  V+   + +  +I GLC    L+ A  L + +  
Sbjct: 520 KVDD-GWDLFCSLS----------LKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKE 568

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +PN  TYN LIR    DG  D+    E    L + + S     D  T  ++ N    
Sbjct: 569 DGPLPNSGTYNTLIRAHLRDG--DKAASAE----LIREMRSCRFVGDASTIGLVANMLHD 622

Query: 372 IGRVSSGFV 380
            GR+   F+
Sbjct: 623 -GRLDKSFL 630


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 160/317 (50%), Gaps = 28/317 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++  +   LAK K     ++L +++   G  P   TYN L+N  CKMGR+     +L 
Sbjct: 165 IHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR 224

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           +I+ +  TPD VT+TSLI  L  E R  EA  LF ++ + G  LD   Y  LI GL + G
Sbjct: 225 KIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAG 284

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSAL 267
               A ++++ M +        C PD +T ST+IDGLCK    G+A  +  S  A   A 
Sbjct: 285 KIPQASSVYKTMTSQG------CVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAP 338

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N++ +                LI GLCK  K+  A E+   + +A   P+ +TYNILI G
Sbjct: 339 NEVVYS--------------ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDG 384

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G ++  + +      F  +   G  PD+YTYNIL++ FCK G   +   +F  +  
Sbjct: 385 LCKSGDVEAARAF------FDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSS 438

Query: 388 SCFTPDAVTFTSLIKIL 404
           S  +P+ VT+ +LI  L
Sbjct: 439 SHCSPNVVTYGTLISGL 455



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 142/292 (48%), Gaps = 32/292 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V + + +   L K       + +FK +   GL P+   Y+ LI+  CK  ++     +
Sbjct: 303 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 362

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++ ++  TPD +T+  LI  LC    +  A A F ++   GC+ DV+TYN L++G C+
Sbjct: 363 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCK 422

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+T  A  +F++M++ +      C P+ +TY T+I GLCK                  L
Sbjct: 423 AGNTDAACGVFDDMSSSH------CSPNVVTYGTLISGLCKR---------------RQL 461

Query: 268 NKMAFYFPLVRVQ-CLCLNFL--CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            K + YF  ++ + C   +F+   L+DGLCK  KL+    LF  + R+G+  N  T   L
Sbjct: 462 TKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRL 520

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           I  LC   ++DE         LF  +   G+ P  Y YN +I+   K  +V+
Sbjct: 521 IFHLCKANRVDE------AVSLFNAIRKEGM-PHPYAYNSIISTLIKSAKVN 565



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 125/300 (41%), Gaps = 29/300 (9%)

Query: 36  TATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNI 95
           T T +  V D  +L   +   CK+   G         A+ +F  M   R   P    ++ 
Sbjct: 295 TMTSQGCVPDVVTLSTMIDGLCKAGRIG--------AAVRIFKSM-EARGLAPNEVVYSA 345

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
           L   L K +  D  L +  ++      PD  TYNILI+  CK G V         +L + 
Sbjct: 346 LIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAG 405

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             PD  T+  L+   C       A  +F  +    C  +V TY TLI+GLC+      A 
Sbjct: 406 CKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKAS 465

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
             F+ M     E G  C PD+  YS+++DGLCK    +  L   CM  F  + +      
Sbjct: 466 LYFQHMK----ERG--CPPDSFVYSSLVDGLCK----SGKLEGGCML-FDEMERSGVANS 514

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
             R +        LI  LCK +++  A  LF ++ + G MP+   YN +I  L    +++
Sbjct: 515 QTRTR--------LIFHLCKANRVDEAVSLFNAIRKEG-MPHPYAYNSIISTLIKSAKVN 565



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 123/312 (39%), Gaps = 65/312 (20%)

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLT--GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           +F CL   K  D    LF+ L+    G     +T N L++ F +  R      +L   L 
Sbjct: 31  IFQCL---KDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELA 87

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV-FGCELDVFTYNTLINGLCRTGHTI 212
           + F PD  T+  LI   C      EA A+  ++   +G    + T+N +++GLC++G  +
Sbjct: 88  TTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVL 147

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A++ FE     NG     C  D  TY+ I+                             
Sbjct: 148 AAMDHFETTTT-NG-----CTIDIHTYTAIV----------------------------- 172

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                             D L K  K++ A  L + +   G  P + TYN L+ GLC  G
Sbjct: 173 ------------------DWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMG 214

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           +++E         L +++   G  PD+ TY  LI+   K  R    + +F  +       
Sbjct: 215 RLEE------AIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVL 268

Query: 393 DAVTFTSLIKIL 404
           D V +T+LI+ L
Sbjct: 269 DTVCYTALIRGL 280



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+D   +  + + A  L ++      +P+V T+N+LI G C        +  E  F + +
Sbjct: 65  LLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYC------LAREPEEAFAVIR 118

Query: 349 RLNST-GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
            +    G+ P L T+N++++  CK G+V +    F     +  T D  T+T+++  L  N
Sbjct: 119 EMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKN 178


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 166/354 (46%), Gaps = 36/354 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ M+ + P  PP + F+ L G + +  HY T +SLF +L   G+ P   T+ I
Sbjct: 37  DDAVTCFNRMVRVFPP-PPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINC+      +  F +L  IL+S + P+ VTF ++I   C    I +A      L   G
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D FTY TLINGL + G    AL+L +EM   +       +P+ + YS +IDGLCK+ 
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSS------VQPNLVMYSALIDGLCKDG 209

Query: 251 GSANFLGF-SCMASFSALNKMAFYFPLVRVQCLC----------------------LNFL 287
             ++ LG  S +     L     Y  L+   C                          F 
Sbjct: 210 FVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFN 269

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LID LCK  ++  A+ +   + + G  P++VTYN L+ G C+   + E +       LF
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARE------LF 323

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            R+   GL PD+  YN+LI+ +CK   V    V+F  +      P   ++ SLI
Sbjct: 324 NRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLI 377



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 164/360 (45%), Gaps = 55/360 (15%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           VT  +++ GC +  + +  V  L  ++    + PD YT+NILI+  CK GR+     VL 
Sbjct: 231 VTYNSLIDGCCSVGR-WQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLA 289

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            + +    PD VT+ +L++  C+   + EA  LF ++   G E DV  YN LI+G C+T 
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTK 349

Query: 210 HTIVALNLFEEMANGN-----------------------------GEFGVVCEPDAITYS 240
               A+ LF+E+ N N                                G    PD +TY+
Sbjct: 350 MVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYN 409

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
            +ID LCKE      LG   M                 V+   + +  ++DG C  + + 
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKKG------------VKPNIVTYNAMMDGYCLRNNVN 457

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
           +A+++F  + ++GL P+++ YN+LI G C    +DE        +LFK +    L PD+ 
Sbjct: 458 VAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEA------IVLFKEMRHKNLIPDIA 511

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL-------EINSFFRQV 413
           +YN LI+  C +GR+     +   +  S  +PD +T+  L+          +  S FRQ+
Sbjct: 512 SYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI 571



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 165/344 (47%), Gaps = 28/344 (8%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EG  +    +EA  +F+ M+  R   P V ++N+L     KTK  D  + LFK L    L
Sbjct: 308 EGYCSRENVHEARELFNRMVK-RGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P   +YN LI+  C  GR+SH   +L  +  S   PD VT+  LI  LC E RI+EA  
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALG 426

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +   +   G + ++ TYN +++G C   +  VA ++F  M           EPD + Y+ 
Sbjct: 427 VLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSG------LEPDILNYNV 480

Query: 242 IIDGLCK-EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           +I+G CK E      + F  M   + +  +A Y               LIDGLC + ++ 
Sbjct: 481 LINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYN-------------SLIDGLCNLGRIP 527

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
             +EL   +  +G  P+V+TYNIL+   C      +T+ ++    LF+++   G++PD Y
Sbjct: 528 HVQELLDEMCDSGQSPDVITYNILLDAFC------KTQPFDKAISLFRQI-VEGIWPDFY 580

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           T + +++  CK  ++         +L    +P+  T+T LI  L
Sbjct: 581 TNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINAL 624



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 149/325 (45%), Gaps = 25/325 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M++ R  +P + ++N L       ++      LF R+   GL PD   YN+LI+ +CK  
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTK 349

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V    V+   +      P   ++ SLI  LC   RI     L  ++       DV TYN
Sbjct: 350 MVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYN 409

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LI+ LC+ G  + AL +   M       GV  +P+ +TY+ ++DG C        L  +
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKK----GV--KPNIVTYNAMMDGYC--------LRNN 455

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
              +    N+M        ++   LN+  LI+G CK   +  A  LF+ +    L+P++ 
Sbjct: 456 VNVAKDIFNRMV----KSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIA 511

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           +YN LI GLCN G++   +       L   +  +G  PD+ TYNIL++ FCK        
Sbjct: 512 SYNSLIDGLCNLGRIPHVQE------LLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAI 565

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            +F +I+   + PD  T  +++  L
Sbjct: 566 SLFRQIVEGIW-PDFYTNHAIVDNL 589



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 119/296 (40%), Gaps = 47/296 (15%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+   V        R++R    P    F  L+  +        A +LFT+L+  G    +
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            T+  LIN      HT  A +L   +           +P+ +T++TII+G C      N 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSG------YQPNLVTFNTIINGFC-----ING 139

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           + F  +     L    + F           +  LI+GL K  ++K A  L Q + ++ + 
Sbjct: 140 MIFKALDFCQNLLAQGYLFDQ-------FTYGTLINGLSKNGQIKAALHLLQEMEKSSVQ 192

Query: 316 PNVVTYNILIRGLCNDG----------QMDE-------------------TKHYETVFLL 346
           PN+V Y+ LI GLC DG          Q+ E                      ++ V  L
Sbjct: 193 PNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQL 252

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             ++    + PD YT+NILI+  CK GR+     +   +      PD VT+ +L++
Sbjct: 253 LTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALME 308



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++NIL     KT+ +D  +SLF+++ + G++PD YT + +++  CK  ++      
Sbjct: 543 PDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYTNHAIVDNLCKGEKLKMAEDA 601

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L    +P+  T+T LI  LC +    EA  L +K+       D  T+  +I  L +
Sbjct: 602 LKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQ 661

Query: 208 TGHTIVALNLFEEM 221
              T  A  L EEM
Sbjct: 662 RNETDKAEKLREEM 675



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%)

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G +    HY T   LF +L S G+ P + T+ ILINC+      +  F +   IL S + 
Sbjct: 63  GAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQ 122

Query: 392 PDAVTFTSLIKILEINSFF 410
           P+ VTF ++I    IN   
Sbjct: 123 PNLVTFNTIINGFCINGMI 141



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+  + ++     A  LF  L   G+ P++ T+ ILI   C   Q     H    F L  
Sbjct: 61  LLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILIN--CYFHQ----SHTAFAFSLLA 114

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
            +  +G  P+L T+N +IN FC  G +         +L   +  D  T+ +LI  L  N
Sbjct: 115 TILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKN 173


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 166/354 (46%), Gaps = 36/354 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ M+ + P  PP + F+ L G + +  HY T +SLF +L   G+ P   T+ I
Sbjct: 37  DDAVTCFNRMVRVFPP-PPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINC+      +  F +L  IL+S + P+ VTF ++I   C    I +A      L   G
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D FTY TLINGL + G    AL+L +EM   +       +P+ + YS +IDGLCK+ 
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSS------VQPNLVMYSALIDGLCKDG 209

Query: 251 GSANFLGF-SCMASFSALNKMAFYFPLVRVQCLC----------------------LNFL 287
             ++ LG  S +     L     Y  L+   C                          F 
Sbjct: 210 FVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFN 269

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LID LCK  ++  A+ +   + + G  P++VTYN L+ G C+   + E +       LF
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARE------LF 323

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            R+   GL PD+  YN+LI+ +CK   V    V+F  +      P   ++ SLI
Sbjct: 324 NRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLI 377



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 164/361 (45%), Gaps = 55/361 (15%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           VT  +++ GC +  + +  V  L  ++    + PD YT+NILI+  CK GR+     VL 
Sbjct: 231 VTYNSLIDGCCSVGR-WQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLA 289

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            + +    PD VT+ +L++  C+   + EA  LF ++   G E DV  YN LI+G C+T 
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTK 349

Query: 210 HTIVALNLFEEMANGN-----------------------------GEFGVVCEPDAITYS 240
               A+ LF+E+ N N                                G    PD +TY+
Sbjct: 350 MVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYN 409

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
            +ID LCKE      LG   M                 V+   + +  ++DG C  + + 
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKKG------------VKPNIVTYNAMMDGYCLRNNVN 457

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
           +A+++F  + ++GL P+++ YN+LI G C    +DE        +LFK +    L PD+ 
Sbjct: 458 VAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEA------IVLFKEMRHKNLIPDIA 511

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL-------EINSFFRQV 413
           +YN LI+  C +GR+     +   +  S  +PD +T+  L+          +  S FRQ+
Sbjct: 512 SYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI 571

Query: 414 A 414
            
Sbjct: 572 V 572



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 165/344 (47%), Gaps = 28/344 (8%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EG  +    +EA  +F+ M+  R   P V ++N+L     KTK  D  + LFK L    L
Sbjct: 308 EGYCSRENVHEARELFNRMVK-RGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P   +YN LI+  C  GR+SH   +L  +  S   PD VT+  LI  LC E RI+EA  
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALG 426

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +   +   G + ++ TYN +++G C   +  VA ++F  M           EPD + Y+ 
Sbjct: 427 VLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSG------LEPDILNYNV 480

Query: 242 IIDGLCK-EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           +I+G CK E      + F  M   + +  +A Y               LIDGLC + ++ 
Sbjct: 481 LINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYN-------------SLIDGLCNLGRIP 527

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
             +EL   +  +G  P+V+TYNIL+   C      +T+ ++    LF+++   G++PD Y
Sbjct: 528 HVQELLDEMCDSGQSPDVITYNILLDAFC------KTQPFDKAISLFRQI-VEGIWPDFY 580

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           T + +++  CK  ++         +L    +P+  T+T LI  L
Sbjct: 581 TNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINAL 624



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 149/325 (45%), Gaps = 25/325 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M++ R  +P + ++N L       ++      LF R+   GL PD   YN+LI+ +CK  
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTK 349

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V    V+   +      P   ++ SLI  LC   RI     L  ++       DV TYN
Sbjct: 350 MVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYN 409

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LI+ LC+ G  + AL +   M       GV  +P+ +TY+ ++DG C        L  +
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKK----GV--KPNIVTYNAMMDGYC--------LRNN 455

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
              +    N+M        ++   LN+  LI+G CK   +  A  LF+ +    L+P++ 
Sbjct: 456 VNVAKDIFNRMV----KSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIA 511

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           +YN LI GLCN G++   +       L   +  +G  PD+ TYNIL++ FCK        
Sbjct: 512 SYNSLIDGLCNLGRIPHVQE------LLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAI 565

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            +F +I+   + PD  T  +++  L
Sbjct: 566 SLFRQIVEGIW-PDFYTNHAIVDNL 589



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 119/296 (40%), Gaps = 47/296 (15%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+   V        R++R    P    F  L+  +        A +LFT+L+  G    +
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            T+  LIN      HT  A +L   +           +P+ +T++TII+G C      N 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSG------YQPNLVTFNTIINGFC-----ING 139

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           + F  +     L    + F           +  LI+GL K  ++K A  L Q + ++ + 
Sbjct: 140 MIFKALDFCQNLLAQGYLFDQ-------FTYGTLINGLSKNGQIKAALHLLQEMEKSSVQ 192

Query: 316 PNVVTYNILIRGLCNDG----------QMDE-------------------TKHYETVFLL 346
           PN+V Y+ LI GLC DG          Q+ E                      ++ V  L
Sbjct: 193 PNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQL 252

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             ++    + PD YT+NILI+  CK GR+     +   +      PD VT+ +L++
Sbjct: 253 LTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALME 308



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++NIL     KT+ +D  +SLF+++ + G++PD YT + +++  CK  ++      
Sbjct: 543 PDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYTNHAIVDNLCKGEKLKMAEDA 601

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L    +P+  T+T LI  LC +    EA  L +K+       D  T+  +I  L +
Sbjct: 602 LKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQ 661

Query: 208 TGHTIVALNLFEEM 221
              T  A  L EEM
Sbjct: 662 RNETDKAEKLREEM 675



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%)

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G +    HY T   LF +L S G+ P + T+ ILINC+      +  F +   IL S + 
Sbjct: 63  GAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQ 122

Query: 392 PDAVTFTSLIKILEINSFF 410
           P+ VTF ++I    IN   
Sbjct: 123 PNLVTFNTIINGFCINGMI 141



 Score = 42.7 bits (99), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 6/123 (4%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+  + ++     A  LF  L   G+ P++ T+ ILI   C   Q     H    F L  
Sbjct: 61  LLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILIN--CYFHQ----SHTAFAFSLLA 114

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            +  +G  P+L T+N +IN FC  G +         +L   +  D  T+ +LI  L  N 
Sbjct: 115 TILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNG 174

Query: 409 FFR 411
             +
Sbjct: 175 QIK 177


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 158/321 (49%), Gaps = 36/321 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   ++N     L +  H    L +   +   G  PD +TYNI++NC CK G++     
Sbjct: 191 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 250

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L +++     PD  TF +LI  LC  +R+ EA  L  ++ V G   DV+T+N LIN LC
Sbjct: 251 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALC 310

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G   +AL LFEEM N        C PD +TY+T+ID LC                  +
Sbjct: 311 KVGDPHLALRLFEEMKNSG------CTPDEVTYNTLIDNLC------------------S 346

Query: 267 LNKMAFYFPLVR----VQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           L K+     L++      C    + +  +IDGLCK  +++ A E+F  +   G+  N +T
Sbjct: 347 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 406

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           +N LI GLC D ++D+       F L  ++ S GL P+  TYN ++  +CK G +     
Sbjct: 407 FNTLIDGLCKDKKIDDA------FELINQMISEGLQPNNITYNSILTHYCKQGDIKKAAD 460

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           I   +  + F  D VT+ +LI
Sbjct: 461 ILETMTANGFEVDVVTYGTLI 481



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 147/313 (46%), Gaps = 26/313 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N L   L +      + S++  +   G+ PD  T+N L+   C+  +V    ++L  + 
Sbjct: 57  YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 116

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                PD  TFT+L++    E  I  A  +  ++   GC     T N LING C+ G   
Sbjct: 117 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 176

Query: 213 VALN-LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
            AL  + +E+A+G        EPD ITY+T ++GLC+     + L    +      +   
Sbjct: 177 DALGYIQQEIADG-------FEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDV 229

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F + +V V CLC N            +L+ A+ +   +   G +P++ T+N LI  LC  
Sbjct: 230 FTYNIV-VNCLCKN-----------GQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTG 277

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
            +++E         L +++   G+ PD+YT+NILIN  CK+G       +F  +  S  T
Sbjct: 278 NRLEEA------LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT 331

Query: 392 PDAVTFTSLIKIL 404
           PD VT+ +LI  L
Sbjct: 332 PDEVTYNTLIDNL 344



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 145/324 (44%), Gaps = 24/324 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R   P  T+F  L     +    +  L +  R+   G    + T N+LIN +CK+GR
Sbjct: 115 MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGR 174

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V      + + +   F PD +T+ + +  LC    +  A  +   +   G + DVFTYN 
Sbjct: 175 VEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNI 234

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           ++N LC+ G    A  +  +M +        C PD  T++T+I  LC        L  + 
Sbjct: 235 VVNCLCKNGQLEEAKGILNQMVDRG------CLPDITTFNTLIAALCTGNRLEEALDLAR 288

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             +   ++   + F +            LI+ LCK+    +A  LF+ +  +G  P+ VT
Sbjct: 289 QVTVKGVSPDVYTFNI------------LINALCKVGDPHLALRLFEEMKNSGCTPDEVT 336

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN LI  LC+ G++ +         L K + STG      TYN +I+  CK  R+     
Sbjct: 337 YNTLIDNLCSLGKLGKA------LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 390

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           +F ++     + +A+TF +LI  L
Sbjct: 391 VFDQMDLQGISRNAITFNTLIDGL 414



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 38/253 (15%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D V +  L+  L   S++    ++++++   G + DV T+NTL+  LCR      A+ + 
Sbjct: 53  DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 112

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-------SANFLGFSCMASFSALNKMA 271
           EEM++     GV   PD  T++T++ G  +E          A  L   C A+   +N   
Sbjct: 113 EEMSS----RGVA--PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVN--- 163

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
                            LI+G CK+ +++ A    Q     G  P+ +TYN  + GLC  
Sbjct: 164 ----------------VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLC-- 205

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
               +  H      +   +   G  PD++TYNI++NC CK G++     I  +++     
Sbjct: 206 ----QNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCL 261

Query: 392 PDAVTFTSLIKIL 404
           PD  TF +LI  L
Sbjct: 262 PDITTFNTLIAAL 274



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  VFD M     SR  +T FN L   L K K  D    L  ++   GL P+  TYN +
Sbjct: 387 EAEEVFDQMDLQGISRNAIT-FNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSI 445

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +  +CK G +     +L  +  + F  D VT+ +LI  LC   R   A  +   +R+ G 
Sbjct: 446 LTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM 505

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
                 YN ++  L R  +   AL+LF EMA       V   PDA+TY  +  GLC+  G
Sbjct: 506 RPTPKAYNPVLQSLFRRNNIRDALSLFREMAE------VGEPPDALTYKIVFRGLCRGGG 559



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 41/162 (25%)

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
           PL  +Q   + +  L++ L + SK+K+   ++  +   G+ P+VVT+N L++ LC   Q+
Sbjct: 46  PLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQV 105

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTY-------------------------------- 362
                  T  L+ + ++S G+ PD  T+                                
Sbjct: 106 ------RTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATK 159

Query: 363 ---NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              N+LIN +CK+GRV        + +   F PD +T+ + +
Sbjct: 160 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFV 201


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 159/324 (49%), Gaps = 36/324 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   ++N     L +  H    L +   +   G  PD +TYNI++NC CK G++     
Sbjct: 283 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 342

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L +++     PD  TF +LI  LC  +R+ EA  L  ++ V G   DV+T+N LIN LC
Sbjct: 343 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALC 402

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G   +AL LFEEM N        C PD +TY+T+ID LC                  +
Sbjct: 403 KVGDPHLALRLFEEMKNSG------CTPDEVTYNTLIDNLC------------------S 438

Query: 267 LNKMAFYFPLVR----VQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           L K+     L++      C    + +  +IDGLCK  +++ A E+F  +   G+  N +T
Sbjct: 439 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 498

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           +N LI GLC D ++D+       F L  ++ S GL P+  TYN ++  +CK G +     
Sbjct: 499 FNTLIDGLCKDKKIDDA------FELINQMISEGLQPNNITYNSILTHYCKQGDIKKAAD 552

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           I   +  + F  D VT+ +LI  L
Sbjct: 553 ILETMTANGFEVDVVTYGTLINGL 576



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 147/313 (46%), Gaps = 26/313 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N L   L +      + S++  +   G+ PD  T+N L+   C+  +V    ++L  + 
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMS 208

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                PD  TFT+L++    E  I  A  +  ++   GC     T N LING C+ G   
Sbjct: 209 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 268

Query: 213 VALN-LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
            AL  + +E+A+G        EPD ITY+T ++GLC+     + L    +      +   
Sbjct: 269 DALGYIQQEIADG-------FEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDV 321

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F + +V V CLC N            +L+ A+ +   +   G +P++ T+N LI  LC  
Sbjct: 322 FTYNIV-VNCLCKN-----------GQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTG 369

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
            +++E         L +++   G+ PD+YT+NILIN  CK+G       +F  +  S  T
Sbjct: 370 NRLEEA------LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT 423

Query: 392 PDAVTFTSLIKIL 404
           PD VT+ +LI  L
Sbjct: 424 PDEVTYNTLIDNL 436



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 145/324 (44%), Gaps = 24/324 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R   P  T+F  L     +    +  L +  R+   G    + T N+LIN +CK+GR
Sbjct: 207 MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGR 266

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V      + + +   F PD +T+ + +  LC    +  A  +   +   G + DVFTYN 
Sbjct: 267 VEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNI 326

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           ++N LC+ G    A  +  +M +        C PD  T++T+I  LC        L  + 
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDRG------CLPDITTFNTLIAALCTGNRLEEALDLAR 380

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             +   ++   + F +            LI+ LCK+    +A  LF+ +  +G  P+ VT
Sbjct: 381 QVTVKGVSPDVYTFNI------------LINALCKVGDPHLALRLFEEMKNSGCTPDEVT 428

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN LI  LC+ G++ +         L K + STG      TYN +I+  CK  R+     
Sbjct: 429 YNTLIDNLCSLGKLGKA------LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 482

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           +F ++     + +A+TF +LI  L
Sbjct: 483 VFDQMDLQGISRNAITFNTLIDGL 506



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 38/253 (15%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D V +  L+  L   S++    ++++++   G + DV T+NTL+  LCR      A+ + 
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIML 204

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-------SANFLGFSCMASFSALNKMA 271
           EEM++     GV   PD  T++T++ G  +E          A  L   C A+   +N   
Sbjct: 205 EEMSS----RGVA--PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVN--- 255

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
                            LI+G CK+ +++ A    Q     G  P+ +TYN  + GLC  
Sbjct: 256 ----------------VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLC-- 297

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
               +  H      +   +   G  PD++TYNI++NC CK G++     I  +++     
Sbjct: 298 ----QNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCL 353

Query: 392 PDAVTFTSLIKIL 404
           PD  TF +LI  L
Sbjct: 354 PDITTFNTLIAAL 366



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 83/181 (45%), Gaps = 7/181 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  VFD M     SR  +T FN L   L K K  D    L  ++   GL P+  TYN 
Sbjct: 478 EEAEEVFDQMDLQGISRNAIT-FNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 536

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++  +CK G +     +L  +  + F  D VT+ +LI  LC   R   A  +   +R+ G
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 596

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
                  YN ++  L R  +   AL+LF EMA       V   PDA+TY  +  GLC+  
Sbjct: 597 MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE------VGEPPDALTYKIVFRGLCRGG 650

Query: 251 G 251
           G
Sbjct: 651 G 651



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 41/165 (24%)

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
           PL  +Q   + +  L++ L + SK+K+   ++  +   G+ P+VVT+N L++ LC   Q+
Sbjct: 138 PLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQV 197

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTY-------------------------------- 362
                  T  ++ + ++S G+ PD  T+                                
Sbjct: 198 ------RTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATK 251

Query: 363 ---NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              N+LIN +CK+GRV        + +   F PD +T+ + +  L
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGL 296


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 159/324 (49%), Gaps = 36/324 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   ++N     L +  H    L +   +   G  PD +TYNI++NC CK G++     
Sbjct: 283 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 342

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L +++     PD  TF +LI  LC  +R+ EA  L  ++ V G   DV+T+N LIN LC
Sbjct: 343 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALC 402

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G   +AL LFEEM N        C PD +TY+T+ID LC                  +
Sbjct: 403 KVGDPHLALRLFEEMKNSG------CTPDEVTYNTLIDNLC------------------S 438

Query: 267 LNKMAFYFPLVR----VQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           L K+     L++      C    + +  +IDGLCK  +++ A E+F  +   G+  N +T
Sbjct: 439 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 498

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           +N LI GLC D ++D+       F L  ++ S GL P+  TYN ++  +CK G +     
Sbjct: 499 FNTLIDGLCKDKKIDDA------FELINQMISEGLQPNNITYNSILTHYCKQGDIKKAAD 552

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           I   +  + F  D VT+ +LI  L
Sbjct: 553 ILETMTANGFEVDVVTYGTLINGL 576



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 147/313 (46%), Gaps = 26/313 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N L   L +      + S++  +   G+ PD  T+N L+   C+  +V    ++L  + 
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 208

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                PD  TFT+L++    E  I  A  +  ++   GC     T N LING C+ G   
Sbjct: 209 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 268

Query: 213 VALN-LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
            AL  + +E+A+G        EPD ITY+T ++GLC+     + L    +      +   
Sbjct: 269 DALGYIQQEIADG-------FEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDV 321

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F + +V V CLC N            +L+ A+ +   +   G +P++ T+N LI  LC  
Sbjct: 322 FTYNIV-VNCLCKN-----------GQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTG 369

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
            +++E         L +++   G+ PD+YT+NILIN  CK+G       +F  +  S  T
Sbjct: 370 NRLEEA------LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT 423

Query: 392 PDAVTFTSLIKIL 404
           PD VT+ +LI  L
Sbjct: 424 PDEVTYNTLIDNL 436



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 145/324 (44%), Gaps = 24/324 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R   P  T+F  L     +    +  L +  R+   G    + T N+LIN +CK+GR
Sbjct: 207 MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGR 266

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V      + + +   F PD +T+ + +  LC    +  A  +   +   G + DVFTYN 
Sbjct: 267 VEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNI 326

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           ++N LC+ G    A  +  +M +        C PD  T++T+I  LC        L  + 
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDRG------CLPDITTFNTLIAALCTGNRLEEALDLAR 380

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             +   ++   + F +            LI+ LCK+    +A  LF+ +  +G  P+ VT
Sbjct: 381 QVTVKGVSPDVYTFNI------------LINALCKVGDPHLALRLFEEMKNSGCTPDEVT 428

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN LI  LC+ G++ +         L K + STG      TYN +I+  CK  R+     
Sbjct: 429 YNTLIDNLCSLGKLGKA------LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 482

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           +F ++     + +A+TF +LI  L
Sbjct: 483 VFDQMDLQGISRNAITFNTLIDGL 506



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 38/253 (15%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D V +  L+  L   S++    ++++++   G + DV T+NTL+  LCR      A+ + 
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 204

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-------SANFLGFSCMASFSALNKMA 271
           EEM++     GV   PD  T++T++ G  +E          A  L   C A+   +N   
Sbjct: 205 EEMSS----RGVA--PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVN--- 255

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
                            LI+G CK+ +++ A    Q     G  P+ +TYN  + GLC  
Sbjct: 256 ----------------VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLC-- 297

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
               +  H      +   +   G  PD++TYNI++NC CK G++     I  +++     
Sbjct: 298 ----QNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCL 353

Query: 392 PDAVTFTSLIKIL 404
           PD  TF +LI  L
Sbjct: 354 PDITTFNTLIAAL 366



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 83/181 (45%), Gaps = 7/181 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  VFD M     SR  +T FN L   L K K  D    L  ++   GL P+  TYN 
Sbjct: 478 EEAEEVFDQMDLQGISRNAIT-FNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 536

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++  +CK G +     +L  +  + F  D VT+ +LI  LC   R   A  +   +R+ G
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 596

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
                  YN ++  L R  +   AL+LF EMA       V   PDA+TY  +  GLC+  
Sbjct: 597 MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE------VGEPPDALTYKIVFRGLCRGG 650

Query: 251 G 251
           G
Sbjct: 651 G 651



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 41/165 (24%)

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
           PL  +Q   + +  L++ L + SK+K+   ++  +   G+ P+VVT+N L++ LC   Q+
Sbjct: 138 PLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQV 197

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTY-------------------------------- 362
                  T  L+ + ++S G+ PD  T+                                
Sbjct: 198 ------RTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATK 251

Query: 363 ---NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              N+LIN +CK+GRV        + +   F PD +T+ + +  L
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGL 296


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  171 bits (432), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 183/397 (46%), Gaps = 75/397 (18%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           +  +  ++A+ +F  M+  RP  P +  F+ L   +AK   +D V+SL +++   G+  +
Sbjct: 57  LNDLKLDDAVNLFGDMVKSRPF-PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHN 115

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI-------- 176
            YTY+ILINCFC+  ++S    VL ++++  + PD VT  SL+   C  +RI        
Sbjct: 116 LYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVG 175

Query: 177 ---------------------------MEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
                                       EA AL  ++ V GC+ D+ TY  ++NGLC+ G
Sbjct: 176 QMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRG 235

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALN 268
              +AL+L ++M  G        EP  + Y+TIID LC      + L  F+ M +     
Sbjct: 236 DIDLALSLLKKMEQGK------IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRP 289

Query: 269 KMAFYFPLVRVQCLC------------------------LNFLCLIDGLCKISKLKIARE 304
            +  Y  L+R  CLC                        + F  LID   K  KL  A +
Sbjct: 290 NVVTYNSLIR--CLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 347

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L+  + +  + P++ TY+ LI G C   ++DE KH      +F+ + S   FP++ TYN 
Sbjct: 348 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH------MFELMISKDCFPNVVTYNT 401

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LI  FCK  RV  G  +F  +       + VT+T+LI
Sbjct: 402 LIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 170/334 (50%), Gaps = 31/334 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V  +N +   L   K+ +  L+LF  ++  G+ P+  TYN LI C C  GR S    
Sbjct: 253 EPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 312

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++     P+ VTF++LI     E +++EA  L+ ++     + D+FTY++LING C
Sbjct: 313 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 372

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A ++FE M + +      C P+ +TY+T+I G CK            M  F  
Sbjct: 373 MHDRLDEAKHMFELMISKD------CFPNVVTYNTLIKGFCKAKRVD-----EGMELFRE 421

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +++       V        +  LI G  +  +   A+ +F+ +   G++P+++TY+IL+ 
Sbjct: 422 MSQRGLVGNTV-------TYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLD 474

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLCN+G++      ET  ++F+ L  + + PD+YTYNI+I   CK G+V  G+ +F  + 
Sbjct: 475 GLCNNGKV------ETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 528

Query: 387 PSCFTPDAVTFTSLIKIL-------EINSFFRQV 413
                P+ VT+T+++          E ++ FR++
Sbjct: 529 LKGVKPNVVTYTTMMSGFCRKGLKEEADALFREM 562



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 163/334 (48%), Gaps = 29/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+AL +F  M N +  RP V ++N L  CL     +     L   +    + P+  T++ 
Sbjct: 273 NDALNLFTEMDN-KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F K G++     +   +++    PD  T++SLI   C   R+ EA  +F  +    
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 391

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CK 248
           C  +V TYNTLI G C+       + LF EM+    + G+V   + +TY+T+I G    +
Sbjct: 392 CFPNVVTYNTLIKGFCKAKRVDEGMELFREMS----QRGLV--GNTVTYTTLIHGFFQAR 445

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           E  +A  + F  M S   L  +             + +  L+DGLC   K++ A  +F+ 
Sbjct: 446 ECDNAQIV-FKQMVSDGVLPDI-------------MTYSILLDGLCNNGKVETALVVFEY 491

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L R+ + P++ TYNI+I G+C  G++++       + LF  L+  G+ P++ TY  +++ 
Sbjct: 492 LQRSKMEPDIYTYNIMIEGMCKAGKVEDG------WDLFCSLSLKGVKPNVVTYTTMMSG 545

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           FC+ G       +F  +      PD+ T+ +LI+
Sbjct: 546 FCRKGLKEEADALFREMKEEGPLPDSGTYNTLIR 579



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 128/309 (41%), Gaps = 26/309 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++D M+  R   P + +++ L          D    +F+ +     FP+  TYN L
Sbjct: 344 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 402

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  FCK  RV  G  +   + +     + VT+T+LI           A  +F ++   G 
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ TY+ L++GLC  G    AL +FE +           EPD  TY+ +I+G+CK   
Sbjct: 463 LPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK------MEPDIYTYNIMIEGMCKAGK 516

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +     C  S               V+   + +  ++ G C+    + A  LF+ +  
Sbjct: 517 VEDGWDLFCSLSLKG------------VKPNVVTYTTMMSGFCRKGLKEEADALFREMKE 564

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +P+  TYN LIR    DG  D+    E    L + + S     D  T  ++ N    
Sbjct: 565 EGPLPDSGTYNTLIRAHLRDG--DKAASAE----LIREMRSCRFVGDASTIGLVTNMLHD 618

Query: 372 IGRVSSGFV 380
            GR+   F+
Sbjct: 619 -GRLDKSFL 626



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 124/281 (44%), Gaps = 26/281 (9%)

Query: 125 RYTY-NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           RY Y  I IN    + ++     + G +++S   P  V F+ L+  +   ++     +L 
Sbjct: 46  RYDYRKISINRLNDL-KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLG 104

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            +++  G   +++TY+ LIN  CR     +AL +  +M     + G   EPD +T ++++
Sbjct: 105 EQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMM----KLGY--EPDIVTLNSLL 158

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           +G C         G     + S + +M      +  Q     F  LI GL + ++   A 
Sbjct: 159 NGFCH--------GNRISDAVSLVGQMV----EMGYQPDSFTFNTLIHGLFRHNRASEAV 206

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            L   +   G  P++VTY I++ GLC  G +D          L K++    + P +  YN
Sbjct: 207 ALVDRMVVKGCQPDLVTYGIVVNGLCKRGDID------LALSLLKKMEQGKIEPGVVIYN 260

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +I+  C    V+    +F  +      P+ VT+ SLI+ L
Sbjct: 261 TIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 301


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  171 bits (432), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 191/411 (46%), Gaps = 71/411 (17%)

Query: 52  FLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
           FL   C  S      +   ++A+  F++M ++ P+ P    FN +   L   K Y T +S
Sbjct: 21  FLPNLCFHSHSLPPLTHNADDAVSQFNHMFHVHPT-PHTFHFNKILISLVNVKRYPTAIS 79

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           L+K++ L+ + PD +T NI+INCFC  G+V   F  + +IL+  + P+ +T  +L+K LC
Sbjct: 80  LYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLC 139

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
            E ++ EA     K+   G  L   +Y  LING+C+ G T  A+ L   +   +      
Sbjct: 140 LEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWS------ 193

Query: 232 CEPDAITYSTIIDGLCKE----------------AGSANFLGFSCMAS-----------F 264
             P+ + YS IID LCK+                  S + + +S + S            
Sbjct: 194 IRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAI 253

Query: 265 SALNKMAF---------YFPLVRVQC-----------------LCLN-----FLCLIDGL 293
             LN+M           Y  LV   C                  C+N     +  L+DG 
Sbjct: 254 DLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGY 313

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           C ++++  A+ +F ++ + G+ P+V  Y+I+I GLC   ++DE  +      LF+ ++  
Sbjct: 314 CLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALN------LFEEIHQK 367

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            + PD  TY  LI+C CK GR+S  + +F  +L     PD +T+ +LI  L
Sbjct: 368 NMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDAL 418



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 152/316 (48%), Gaps = 26/316 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++IL          +  + L   + L  + PD YTY IL++  CK G+V     V
Sbjct: 231 PDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENV 290

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++++C   D V +++L+   C  + +  A  +F  +   G   DV  Y+ +INGLC+
Sbjct: 291 LAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCK 350

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 ALNLFEE+   N        PD +TY+++ID LCK +G  +++       +   
Sbjct: 351 IKRVDEALNLFEEIHQKN------MVPDTVTYTSLIDCLCK-SGRISYV-------WDLF 396

Query: 268 NKMAFYFPLVRVQCL-CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           ++M     L R Q    + +  LID LCK   L  A  LF  +    + PNV T+ IL+ 
Sbjct: 397 DEM-----LDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLD 451

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G++     +      F+ L + G   ++ TY ++IN  CK G +     +  R+ 
Sbjct: 452 GLCKVGRLKNALEF------FQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRME 505

Query: 387 PSCFTPDAVTFTSLIK 402
            +    DAVTF  +I+
Sbjct: 506 DNGCISDAVTFEIMIR 521



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 147/315 (46%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V  ++++   L K    D    L+  +   G+ PD  TY+IL++ FC +G+++    
Sbjct: 195 RPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAID 254

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++     PD  T+T L+  LC E ++ EA  +   +      LDV  Y+TL++G C
Sbjct: 255 LLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYC 314

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A  +F  M     + GV   PD   YS +I+GLCK       L       F  
Sbjct: 315 LVNEVNNAKRVFYTMT----QMGVT--PDVHCYSIMINGLCKIKRVDEALNL-----FEE 363

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +++       V        +  LID LCK  ++    +LF  +   G  P+V+TYN LI 
Sbjct: 364 IHQKNMVPDTV-------TYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLID 416

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC +G +D          LF ++    + P++YT+ IL++  CK+GR+ +    F  +L
Sbjct: 417 ALCKNGHLDRA------IALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLL 470

Query: 387 PSCFTPDAVTFTSLI 401
              +  +  T+T +I
Sbjct: 471 TKGYCLNVRTYTVMI 485



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 24/230 (10%)

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           +F  +   G+ PD + Y+I+IN  CK+ RV     +   I +    PD VT+TSLI  LC
Sbjct: 325 VFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLC 384

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
              RI     LF ++   G   DV TYN LI+ LC+ GH   A+ LF +M +        
Sbjct: 385 KSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQ------A 438

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLC 288
             P+  T++ ++DGLCK     N L F               F  +  +  CLN   +  
Sbjct: 439 IRPNVYTFTILLDGLCKVGRLKNALEF---------------FQDLLTKGYCLNVRTYTV 483

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           +I+GLCK   L  A  L   +   G + + VT+ I+IR   +  + D+ +
Sbjct: 484 MINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAE 533



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 7/180 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A  VF  M  M  + P V  ++I+   L K K  D  L+LF+ ++   + PD  TY  
Sbjct: 320 NNAKRVFYTMTQMGVT-PDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTS 378

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+C CK GR+S+ + +   +L     PD +T+ +LI  LC    +  A ALF K++   
Sbjct: 379 LIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQA 438

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +V+T+  L++GLC+ G    AL  F+++        V       TY+ +I+GLCKE 
Sbjct: 439 IRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVR------TYTVMINGLCKEG 492



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 1/146 (0%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD ML+ R   P V ++N L   L K  H D  ++LF ++    + P+ YT+ IL++  
Sbjct: 395 LFDEMLD-RGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGL 453

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK+GR+ +       +L   +  +  T+T +I  LC E  + EA AL +++   GC  D 
Sbjct: 454 CKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDA 513

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEM 221
            T+  +I           A  L  EM
Sbjct: 514 VTFEIMIRAFFDKDENDKAEKLVREM 539


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 112/334 (33%), Positives = 171/334 (51%), Gaps = 29/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+AL +F  M++ RP  P +  F  L   +AK   YD V+SLF+++ + G+ P   T NI
Sbjct: 65  NDALDLFTRMVHSRPL-PSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNI 123

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++C C   +       LG++++  F PD VTFTSL+   C  +RI +A ALF ++   G
Sbjct: 124 VMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMG 183

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
            + +V TY TLI  LC+  H   A+ LF +M   NG       P+ +TY+ ++ GLC+  
Sbjct: 184 FKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGT-NGS-----RPNVVTYNALVTGLCEIG 237

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
             G A +L    M                R++   + F  LID   K+ KL  A+EL+  
Sbjct: 238 RWGDAAWLLRDMMKR--------------RIEPNVITFTALIDAFVKVGKLMEAKELYNV 283

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + +  + P+V TY  LI GLC  G +DE +    +F L +R    G +P+   Y  LI+ 
Sbjct: 284 MIQMSVYPDVFTYGSLINGLCMYGLLDEARQ---MFYLMER---NGCYPNEVIYTTLIHG 337

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           FCK  RV  G  IF  +       + +T+T LI+
Sbjct: 338 FCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQ 371



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 172/351 (49%), Gaps = 36/351 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ +FD +L M   +P V ++  L  CL K +H +  + LF ++   G  P+  TYN L
Sbjct: 171 DAIALFDQILGM-GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNAL 229

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   C++GR      +L  +++    P+ +TFT+LI       ++MEA  L+  +     
Sbjct: 230 VTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSV 289

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DVFTY +LINGLC  G    A  +F  M   NG     C P+ + Y+T+I G CK   
Sbjct: 290 YPDVFTYGSLINGLCMYGLLDEARQMFYLMER-NG-----CYPNEVIYTTLIHGFCK--- 340

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                      S    + M  ++ + +  V    + +  LI G C + +  +A+E+F  +
Sbjct: 341 -----------SKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQM 389

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
                 P++ TYN+L+ GLC +G++      E   ++F+ +    +  ++ TY I+I   
Sbjct: 390 SSRRAPPDIRTYNVLLDGLCCNGKV------EKALMIFEYMRKREMDINIVTYTIIIQGM 443

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-------ILEINSFFRQV 413
           CK+G+V   F +F  +      P+ +T+T++I        I E +S F+++
Sbjct: 444 CKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKM 494



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 121/282 (42%), Gaps = 30/282 (10%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +F  L     K         L+  +    ++PD +TY  LIN  C  G +  
Sbjct: 252 RRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDE 311

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   + R+   P+ V +T+LI   C   R+ +   +F ++   G   +  TY  LI 
Sbjct: 312 ARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQ 371

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C  G   VA  +F +M++          PD  TY+ ++DGLC                
Sbjct: 372 GYCLVGRPDVAQEVFNQMSSRRA------PPDIRTYNVLLDGLCCNG------------- 412

Query: 264 FSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
              + K    F  +R + + +N   +  +I G+CK+ K++ A +LF SL   G+ PNV+T
Sbjct: 413 --KVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVIT 470

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
           Y  +I G C  G + E         LFK++   G  P+   Y
Sbjct: 471 YTTMISGFCRRGLIHEADS------LFKKMKEDGFLPNESVY 506



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 6/121 (4%)

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           ++F  L+  + K+++  +   LF+ +   G+ P + T NI++  +C   Q      +   
Sbjct: 84  IDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCF--- 140

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
                ++   G  PDL T+  L+N +C   R+     +F +IL   F P+ VT+T+LI+ 
Sbjct: 141 ---LGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRC 197

Query: 404 L 404
           L
Sbjct: 198 L 198


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 104/324 (32%), Positives = 159/324 (49%), Gaps = 36/324 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   ++N     L +  H    L +   +   G  PD +TYNI++NC CK G++     
Sbjct: 283 EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 342

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L +++     PD  TF +LI  LC  +R+ EA  L  ++ V G   DV+T+N LIN LC
Sbjct: 343 ILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALC 402

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G   +AL LFEEM N        C PD +TY+T+ID LC                  +
Sbjct: 403 KVGDPHLALRLFEEMKNSG------CTPDEVTYNTLIDNLC------------------S 438

Query: 267 LNKMAFYFPLVR----VQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           L K+     L++      C    + +  +IDGLCK  +++ A E+F  +   G+  N +T
Sbjct: 439 LGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAIT 498

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           +N LI GLC D ++D+       F L  ++ S GL P+  TYN ++  +CK G +     
Sbjct: 499 FNTLIDGLCKDKKIDDA------FGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAAD 552

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           I   +  + F  D VT+ +LI  L
Sbjct: 553 ILETMTANGFEVDVVTYGTLINGL 576



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 147/313 (46%), Gaps = 26/313 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N L   L +      + S++  +   G+ PD  T+N L+   C+  +V    ++L  + 
Sbjct: 149 YNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 208

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                PD  TFT+L++    E  I  A  +  ++   GC     T N LING C+ G   
Sbjct: 209 SRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVE 268

Query: 213 VALN-LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
            AL  + +E+A+G        EPD ITY+T ++GLC+     + L    +      +   
Sbjct: 269 DALGYIQQEIADG-------FEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDV 321

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F + +V V CLC N            +L+ A+ +   +   G +P++ T+N LI  LC  
Sbjct: 322 FTYNIV-VNCLCKN-----------GQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTG 369

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
            +++E         L +++   G+ PD+YT+NILIN  CK+G       +F  +  S  T
Sbjct: 370 NRLEEA------LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT 423

Query: 392 PDAVTFTSLIKIL 404
           PD VT+ +LI  L
Sbjct: 424 PDEVTYNTLIDNL 436



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 145/324 (44%), Gaps = 24/324 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R   P  T+F  L     +    +  L +  R+   G    + T N+LIN +CK+GR
Sbjct: 207 MSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGR 266

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V      + + +   F PD +T+ + +  LC    +  A  +   +   G + DVFTYN 
Sbjct: 267 VEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNI 326

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           ++N LC+ G    A  +  +M +        C PD  T++T+I  LC        L  + 
Sbjct: 327 VVNCLCKNGQLEEAKGILNQMVDRG------CLPDITTFNTLIAALCTGNRLEEALDLAR 380

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             +   ++   + F +            LI+ LCK+    +A  LF+ +  +G  P+ VT
Sbjct: 381 QVTVKGVSPDVYTFNI------------LINALCKVGDPHLALRLFEEMKNSGCTPDEVT 428

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN LI  LC+ G++ +         L K + STG      TYN +I+  CK  R+     
Sbjct: 429 YNTLIDNLCSLGKLGKA------LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEE 482

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           +F ++     + +A+TF +LI  L
Sbjct: 483 VFDQMDLQGISRNAITFNTLIDGL 506



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 38/253 (15%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D V +  L+  L   S++    ++++++   G + DV T+NTL+  LCR      A+ + 
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 204

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-------SANFLGFSCMASFSALNKMA 271
           EEM++     GV   PD  T++T++ G  +E          A  L   C A+   +N   
Sbjct: 205 EEMSS----RGVA--PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVN--- 255

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
                            LI+G CK+ +++ A    Q     G  P+ +TYN  + GLC  
Sbjct: 256 ----------------VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLC-- 297

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
               +  H      +   +   G  PD++TYNI++NC CK G++     I  +++     
Sbjct: 298 ----QNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCL 353

Query: 392 PDAVTFTSLIKIL 404
           PD  TF +LI  L
Sbjct: 354 PDITTFNTLIAAL 366



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 83/181 (45%), Gaps = 7/181 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  VFD M     SR  +T FN L   L K K  D    L  ++   GL P+  TYN 
Sbjct: 478 EEAEEVFDQMDLQGISRNAIT-FNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNS 536

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++  +CK G +     +L  +  + F  D VT+ +LI  LC   R   A  +   +R+ G
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKG 596

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
                  YN ++  L R  +   AL+LF EMA       V   PDA+TY  +  GLC+  
Sbjct: 597 MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAE------VGEPPDALTYKIVFRGLCRGG 650

Query: 251 G 251
           G
Sbjct: 651 G 651



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 41/165 (24%)

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
           PL  +Q   + +  L++ L + SK+K+   ++  +   G+ P+VVT+N L++ LC   Q+
Sbjct: 138 PLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQV 197

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTY-------------------------------- 362
                  T  L+ + ++S G+ PD  T+                                
Sbjct: 198 ------RTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATK 251

Query: 363 ---NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              N+LIN +CK+GRV        + +   F PD +T+ + +  L
Sbjct: 252 VTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGL 296


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 35/337 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N+L     K         L K +  +GL P+  TY+ +I+ FC+  +V   + +
Sbjct: 40  PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 99

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++ +   P+ VT+ +L+  LC    + EA  L  ++R  G + D F+Y+TL+ GLC+
Sbjct: 100 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCK 159

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-----EAGS--ANFLGFSC 260
           TG   +AL +FE+ +NG+      C PD + YST+I GLCK     EA          SC
Sbjct: 160 TGKIDMALKVFEDNSNGD------CPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSC 213

Query: 261 ---MASFSAL-NKMAFYFPLVRVQCL------------CLNFLCLIDGLCKISKLKIARE 304
              + +F+AL + +     L   Q +             + +  LIDGLCK  +++ A+E
Sbjct: 214 EPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQE 273

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +F+ +   G+ PNVVTYN LI G C       T   ++  LL + + +TG  PD+ TYN 
Sbjct: 274 VFKRMIVRGIEPNVVTYNSLIHGFCM------TNGVDSALLLMEEMTATGCLPDIITYNT 327

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LI+  CK GR      +FG +      PD +T++ LI
Sbjct: 328 LIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLI 364



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 150/334 (44%), Gaps = 26/334 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  VF  M+ +R   P V ++N L      T   D+ L L + +  TG  PD  TYN L
Sbjct: 270 DAQEVFKRMI-VRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTL 328

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK GR      + G +      PD +T++ LI   C   RI  A  LF  +     
Sbjct: 329 IDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAV 388

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV T++TL+ G C  G    A  L EEM   +      C PD  TY++++DG CK   
Sbjct: 389 LPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASD------CSPDVYTYTSLVDGFCKVG- 441

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                    + +   L +MA        Q   + +  LID  C+  K  +A +L + +  
Sbjct: 442 -------RMVEARRVLKRMAKRG----CQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVG 490

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN-STGLFPDLYTYNILINCFC 370
            G+ PNV+TY  LI G C  G ++E +       + +RL        D++ Y ++++  C
Sbjct: 491 NGVQPNVITYRSLIGGFCGTGDLEEARK------MLERLERDENCKADMFAYRVMMDGLC 544

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + GR+S+   +   I  S   P    + +LI+ L
Sbjct: 545 RTGRMSAALELLEAIKQSGTPPRHDIYVALIRGL 578



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 133/299 (44%), Gaps = 22/299 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++ L G   K +  D   +LF  +    + PD  T++ L+  +C  G V     +
Sbjct: 355 PDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERL 414

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++ S  +PD  T+TSL+   C   R++EA  +  ++   GC+ +V TY  LI+  CR
Sbjct: 415 LEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCR 474

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G   VA  L EEM  GNG      +P+ ITY ++I G C   G+ +      M      
Sbjct: 475 AGKPTVAYKLLEEMV-GNG-----VQPNVITYRSLIGGFC---GTGDLEEARKMLERLER 525

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           ++          +     +  ++DGLC+  ++  A EL +++ ++G  P    Y  LIRG
Sbjct: 526 DE--------NCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRG 577

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           LC   ++ +         L ++       P+   Y  +I    + GR      +   +L
Sbjct: 578 LCQGKELGKAMEVLEEMTLSRKSR-----PNAEAYEAVIQELAREGRHEEANALADELL 631



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 139/319 (43%), Gaps = 26/319 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L   L KT        LF  +      PD  TY+ LI  FCK+ R+     +
Sbjct: 320 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 379

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L+    PD VTF++L++  C    + +A  L  ++    C  DV+TY +L++G C+
Sbjct: 380 FDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 439

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  + A  + + MA         C+P+ +TY+ +ID  C+ AG           ++  L
Sbjct: 440 VGRMVEARRVLKRMAKRG------CQPNVVTYTALIDAFCR-AGKPTV-------AYKLL 485

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR-AGLMPNVVTYNILIR 326
            +M        VQ   + +  LI G C    L+ AR++ + L R      ++  Y +++ 
Sbjct: 486 EEMVGNG----VQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMD 541

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI- 385
           GLC  G+M           L + +  +G  P    Y  LI   C+   +     +   + 
Sbjct: 542 GLCRTGRM------SAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEMT 595

Query: 386 LPSCFTPDAVTFTSLIKIL 404
           L     P+A  + ++I+ L
Sbjct: 596 LSRKSRPNAEAYEAVIQEL 614



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 116/247 (46%), Gaps = 26/247 (10%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           + +T+T +I  LC  +R+ EA   F K++  G   + +TYN LING C+      A  L 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFSALNKMAFYFPLV 277
           +EM     E G+   P+ +TYST+I G C++      +  F  M     +  +  Y    
Sbjct: 66  KEMK----ESGLA--PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNT-- 117

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                      L+ GLC+   +  A EL   +   GL P+  +Y+ L+ GLC  G++D  
Sbjct: 118 -----------LLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKID-- 164

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   +F+  ++    PD+  Y+ LI   CK GR+     +F ++  +   PD VTF
Sbjct: 165 ----MALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTF 220

Query: 398 TSLIKIL 404
           T+L+  L
Sbjct: 221 TALMDGL 227



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 30/214 (14%)

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           CE +V T+  +I+GLC+      A   F +M       G V  P+  TY+ +I+G CK  
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKK----GTV--PNEWTYNVLINGFCK-- 54

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQ 307
                           +++       ++   L  N   +  +I G C+ +K+  A +LF+
Sbjct: 55  -------------VHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFR 101

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +   G MPN+VTYN L+ GLC +G MDE       + L   +   GL PD ++Y+ L+ 
Sbjct: 102 QMVENGCMPNLVTYNTLLSGLCRNGLMDE------AYELLDEMRERGLQPDKFSYDTLMA 155

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             CK G++     +F         PD V +++LI
Sbjct: 156 GLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLI 189


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 167/333 (50%), Gaps = 33/333 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V +++ L   L K++ +     + + +  +G+ PD +TY+ LI+  CK  ++     
Sbjct: 159 RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQ 218

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L R+  S  TPD V ++S+I   C   +++EA     ++R      DV TYNT+I+GLC
Sbjct: 219 MLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLC 278

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE---AGSANFLGFSCMAS 263
           + G    A  + ++M     E G V  PD +TYST+I+GLCK      +   L   C A 
Sbjct: 279 KLGKIAEAQVILDQMQ----ESGDVL-PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAG 333

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            +         P V      + +  +IDGLCK  +L+ A  L Q + RAG  PNVVTY  
Sbjct: 334 CN---------PDV------VTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTT 378

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GLC   ++DE +       + + + + G  P+L TYN ++N  C  GR+     +  
Sbjct: 379 LISGLCKARKVDEAER------VMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQ 432

Query: 384 RI---LPSCFTPDAVTFTSLIKILEINSFFRQV 413
           R+      C +PDA T+ +++  L  +   ++ 
Sbjct: 433 RMKDGRAEC-SPDAATYRTIVNALMSSDLVQEA 464



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 155/328 (47%), Gaps = 27/328 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN L     K  + D    L   +   G+ P+  TY+ LI+  CK  +      V
Sbjct: 125 PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEV 184

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +  S  TPDA T+++LI  LC   +I EA  +  ++   GC  DV  Y+++I+  C+
Sbjct: 185 LEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCK 244

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS--FS 265
           +G  + A    +EM            PD +TY+T+IDGLCK       LG    A     
Sbjct: 245 SGKLLEAQKTLQEMRKQRKS------PDVVTYNTVIDGLCK-------LGKIAEAQVILD 291

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            + +     P V      + +  +I+GLCK   L  A++L   + +AG  P+VVTY  +I
Sbjct: 292 QMQESGDVLPDV------VTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTII 345

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC  G+++E ++      L + +   G  P++ TY  LI+  CK  +V     +   +
Sbjct: 346 DGLCKCGRLEEAEY------LLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEM 399

Query: 386 LPSCFTPDAVTFTSLIKILEINSFFRQV 413
             +   P+ VT+ +++  L ++   ++ 
Sbjct: 400 RNAGCPPNLVTYNTMVNGLCVSGRIKEA 427



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 154/338 (45%), Gaps = 36/338 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L    A+ K  +  + L + +   G  P+  TYN+L++  CK+  V     V
Sbjct: 55  PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDV 114

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + +++   F P+ +TF SL+   C    + +A  L   +   G   +V TY+ LI+GLC+
Sbjct: 115 VKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCK 174

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-------EAGSANFLGFSC 260
           +   + A  + EEM       GV   PDA TYS +I GLCK       E       G  C
Sbjct: 175 SQKFLEAKEVLEEMKAS----GVT--PDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGC 228

Query: 261 MASFSALNKMAFYF----PLVRVQCL------------CLNFLCLIDGLCKISKLKIARE 304
                  + +   F     L+  Q               + +  +IDGLCK+ K+  A+ 
Sbjct: 229 TPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQV 288

Query: 305 LFQSLPRAG-LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           +   +  +G ++P+VVTY+ +I GLC    + E +       L  R+   G  PD+ TY 
Sbjct: 289 ILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQK------LLDRMCKAGCNPDVVTYT 342

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +I+  CK GR+     +   +  +   P+ VT+T+LI
Sbjct: 343 TIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLI 380



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 139/291 (47%), Gaps = 27/291 (9%)

Query: 113 FKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
              L   G  P+  TY  LI  F +  ++     +L  +      P+ VT+  L+  LC 
Sbjct: 45  MDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 104

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVV 231
            S +  A  +  K+   G   +V T+N+L++G C+ G+   A  L   M A G       
Sbjct: 105 LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG------- 157

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
             P+ +TYS +IDGLCK   S  FL      +   L +M        V      +  LI 
Sbjct: 158 MRPNVVTYSALIDGLCK---SQKFL-----EAKEVLEEMKASG----VTPDAFTYSALIH 205

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GLCK  K++ A ++ + +  +G  P+VV Y+ +I   C  G++ E +  +T+  + K+  
Sbjct: 206 GLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQ--KTLQEMRKQRK 263

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC-FTPDAVTFTSLI 401
           S    PD+ TYN +I+  CK+G+++   VI  ++  S    PD VT++++I
Sbjct: 264 S----PDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVI 310



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 4/175 (2%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + D M       P V +++ +   L K+        L  R+   G  PD  TY  +
Sbjct: 285 EAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTI 344

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK GR+     +L  + R+   P+ VT+T+LI  LC   ++ EA  +  ++R  GC
Sbjct: 345 IDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGC 404

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
             ++ TYNT++NGLC +G    A  L + M +G  E    C PDA TY TI++ L
Sbjct: 405 PPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAE----CSPDAATYRTIVNAL 455



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 8/177 (4%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYTYNI 130
           EA      M   R S P V ++N +   L K         +  ++  +G + PD  TY+ 
Sbjct: 250 EAQKTLQEMRKQRKS-PDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYST 308

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     +L R+ ++   PD VT+T++I  LC   R+ EA  L   ++  G
Sbjct: 309 VINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG 368

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
           C  +V TY TLI+GLC+      A  + EEM N        C P+ +TY+T+++GLC
Sbjct: 369 CAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAG------CPPNLVTYNTMVNGLC 419



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 9/111 (8%)

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           C    L  A EL + +  AG  P+  T+  +I  + N G +D    +         L S 
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDH---------LRSM 51

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G  P++ TY  LI  F +  ++     +   +      P+ VT+  L+  L
Sbjct: 52  GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDAL 102


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 171/351 (48%), Gaps = 34/351 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL  F+ ML+  P +PP+  FN L   + + K Y+TV+SLFK +   G+  +  T +I
Sbjct: 22  DDALASFNRMLDRNP-QPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSI 80

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC +  V +GF V G+ L+  F PD V FT+LI  +C   +   AA L  ++ + G
Sbjct: 81  LINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVG 140

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-E 249
           C  DV T N+L+ G C  G       +F  M +         +PD  +YS  I+G CK E
Sbjct: 141 CVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKG------LKPDVYSYSIFINGYCKVE 194

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                   F  M+    +     Y  L++              LC+  + + A+ LF+ +
Sbjct: 195 KIDEAMELFDEMSHRGVVPNAVTYNTLIK-------------ALCQALRPRDAQVLFRKM 241

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              GL P+++ Y+ L+ G C  G +DE      + +LF+ +    + PDL  Y I+IN  
Sbjct: 242 CACGLSPDILAYSTLLDGFCKQGNLDE------MLVLFQEMQRRLVKPDLVVYTIIINGM 295

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-------ILEINSFFRQV 413
           C+  +V     +  R++     PD  T+T+L+        I+E    FR++
Sbjct: 296 CRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKM 346



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 127/278 (45%), Gaps = 24/278 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V + N L          D V  +F  +   GL PD Y+Y+I IN +CK+ ++     +
Sbjct: 143 PDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMEL 202

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      P+AVT+ +LIK LC   R  +A  LF K+   G   D+  Y+TL++G C+
Sbjct: 203 FDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCK 262

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+    L LF+EM         + +PD + Y+ II+G+C+     +        +   L
Sbjct: 263 QGNLDEMLVLFQEMQRR------LVKPDLVVYTIIINGMCRSRKVKD--------AKEVL 308

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +++        V      +  L+DGLC+   +  A  LF+ +   G MP   +YN+L++G
Sbjct: 309 SRLIVEGLKPDVH----TYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQG 364

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
                Q ++T    TV  L   +   G + D  T   L
Sbjct: 365 CL---QHNDT---STVVQLIHEMADRGFYADAVTRTFL 396



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 127/286 (44%), Gaps = 35/286 (12%)

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G +        R+L     P  + F  L+  +    +     +LF ++   G + +V T 
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTL 78

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK------EAGS 252
           + LIN  C   H     ++F +            +PD + ++T+IDG+C+       AG 
Sbjct: 79  SILINCFCFLHHVDYGFSVFGKTLKRG------FKPDVVIFTTLIDGVCRIGKTELAAGL 132

Query: 253 ANFLGF-----------SCMASF---SALNKMAFYFPLVRVQCL---CLNFLCLIDGLCK 295
              +G            S M  +     ++K+   F L+  + L     ++   I+G CK
Sbjct: 133 LKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCK 192

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
           + K+  A ELF  +   G++PN VTYN LI+ LC   +  + +      +LF+++ + GL
Sbjct: 193 VEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQ------VLFRKMCACGL 246

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            PD+  Y+ L++ FCK G +    V+F  +      PD V +T +I
Sbjct: 247 SPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIII 292



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 1/157 (0%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           ++ P +A  +F  M     S P + +++ L     K  + D +L LF+ +    + PD  
Sbjct: 228 ALRPRDAQVLFRKMCACGLS-PDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLV 286

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
            Y I+IN  C+  +V     VL R++     PD  T+T+L+  LC E  I+EA  LF K+
Sbjct: 287 VYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKM 346

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
              GC     +YN L+ G  +   T   + L  EMA+
Sbjct: 347 EEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMAD 383


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 166/333 (49%), Gaps = 33/333 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V +++ L   L K++ +     + + +   G+ PD +TY+ LI+  CK  ++     
Sbjct: 281 RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQ 340

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L R+  S  TPD V ++S+I   C   +++EA     ++R      DV TYNT+I+GLC
Sbjct: 341 MLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLC 400

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE---AGSANFLGFSCMAS 263
           + G    A  + E+M     E G V  PD +TYST+I+GLCK      +   L   C A 
Sbjct: 401 KLGKIAEAQVILEQMQ----ESGDVL-PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAG 455

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            +         P V      + +  +IDGLCK  +L+ A  L Q + RAG  PNVVTY  
Sbjct: 456 CN---------PDV------VTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTT 500

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GLC   ++DE +       + + + + G  P+L TYN ++N  C  GR+     +  
Sbjct: 501 LISGLCKARKVDEAER------VMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQ 554

Query: 384 RI---LPSCFTPDAVTFTSLIKILEINSFFRQV 413
           R+      C +PDA T+ +++  L  +   ++ 
Sbjct: 555 RMKDGRAEC-SPDAATYRTIVNALMSSDLVQEA 586



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 156/341 (45%), Gaps = 36/341 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L    A+ K  +  + L + +   G  P+  TYN+L++  CK+  V     V
Sbjct: 177 PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDV 236

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + +++   F P+ +TF SL+   C    + +A  L   +   G   +V TY+ LI+GLC+
Sbjct: 237 VKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCK 296

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-------EAGSANFLGFSC 260
           +   + A  + EEM       GV   PDA TYS +I GLCK       E       G  C
Sbjct: 297 SQKFLEAKEVLEEMKT----RGVT--PDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGC 350

Query: 261 MASFSALNKMAFYF----PLVRVQCL------------CLNFLCLIDGLCKISKLKIARE 304
                  + +   F     L+  Q               + +  +IDGLCK+ K+  A+ 
Sbjct: 351 TPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQV 410

Query: 305 LFQSLPRAG-LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           + + +  +G ++P+VVTY+ +I GLC    + E +       L  R+   G  PD+ TY 
Sbjct: 411 ILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQK------LLDRMCKAGCNPDVVTYT 464

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +I+  CK GR+     +   +  +   P+ VT+T+LI  L
Sbjct: 465 TIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGL 505



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 154/328 (46%), Gaps = 27/328 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN L     K  + D    L   +   G+ P+  TY+ LI+  CK  +      V
Sbjct: 247 PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEV 306

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +     TPDA T+++LI  LC   +I EA  +  ++   GC  DV  Y+++I+  C+
Sbjct: 307 LEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCK 366

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS--FS 265
           +G  + A    +EM            PD +TY+T+IDGLCK       LG    A     
Sbjct: 367 SGKLLEAQKTLQEMRKQRKS------PDVVTYNTVIDGLCK-------LGKIAEAQVILE 413

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            + +     P V      + +  +I+GLCK   L  A++L   + +AG  P+VVTY  +I
Sbjct: 414 QMQESGDVLPDV------VTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTII 467

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC  G+++E ++      L + +   G  P++ TY  LI+  CK  +V     +   +
Sbjct: 468 DGLCKCGRLEEAEY------LLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEM 521

Query: 386 LPSCFTPDAVTFTSLIKILEINSFFRQV 413
             +   P+ VT+ +++  L ++   ++ 
Sbjct: 522 RNAGCPPNLVTYNTMVNGLCVSGRIKEA 549



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 157/331 (47%), Gaps = 38/331 (11%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S+N L   L + K +     LF+   L    PD  +YNI+I+ FC  G +     +L  +
Sbjct: 79  SWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEM 138

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
             + F PDA T T +I  + A +  ++ A     LR  GC+ +V TY  LI    R    
Sbjct: 139 KSAGFAPDAFTHTPIITAM-ANAGDLDGA--MDHLRSMGCDPNVVTYTALIAAFARAKKL 195

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM- 270
             A+ L EEM     E G  C P+ +TY+ ++D LCK     + +G    A+   + KM 
Sbjct: 196 EEAMKLLEEMR----ERG--CPPNLVTYNVLVDALCK----LSMVG----AAQDVVKKMI 241

Query: 271 -AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
              + P V      + F  L+DG CK   +  AR+L   +   G+ PNVVTY+ LI GLC
Sbjct: 242 EGGFAPNV------MTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLC 295

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
              +  E K       + + + + G+ PD +TY+ LI+  CK  ++     +  R+  S 
Sbjct: 296 KSQKFLEAKE------VLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSG 349

Query: 390 FTPDAVTFTSLI-------KILEINSFFRQV 413
            TPD V ++S+I       K+LE     +++
Sbjct: 350 CTPDVVVYSSIIHAFCKSGKLLEAQKTLQEM 380



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 148/337 (43%), Gaps = 40/337 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V S+NI+             L L + +   G  PD +T+  +I      G +     
Sbjct: 109 EPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMD 168

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L  +   C  P+ VT+T+LI       ++ EA  L  ++R  GC  ++ TYN L++ LC
Sbjct: 169 HLRSM--GC-DPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALC 225

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG---SANFLGFSCMAS 263
           +      A ++ ++M  G   F     P+ +T+++++DG CK      +   LG      
Sbjct: 226 KLSMVGAAQDVVKKMIEGG--FA----PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG 279

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
                      P V      + +  LIDGLCK  K   A+E+ + +   G+ P+  TY+ 
Sbjct: 280 MR---------PNV------VTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSA 324

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GLC   +++E +       + +R+  +G  PD+  Y+ +I+ FCK G++        
Sbjct: 325 LIHGLCKADKIEEAEQ------MLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQ 378

Query: 384 RILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
            +     +PD VT+ ++I       KI E      Q+
Sbjct: 379 EMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQM 415



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 140/294 (47%), Gaps = 27/294 (9%)

Query: 113 FKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
              L   G  P+  TY  LI  F +  ++     +L  +      P+ VT+  L+  LC 
Sbjct: 167 MDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 226

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVV 231
            S +  A  +  K+   G   +V T+N+L++G C+ G+   A  L   M A G       
Sbjct: 227 LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG------- 279

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
             P+ +TYS +IDGLCK   S  FL      +   L +M        V      +  LI 
Sbjct: 280 MRPNVVTYSALIDGLCK---SQKFL-----EAKEVLEEMKTRG----VTPDAFTYSALIH 327

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GLCK  K++ A ++ + +  +G  P+VV Y+ +I   C  G++ E +  +T+  + K+  
Sbjct: 328 GLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQ--KTLQEMRKQRK 385

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC-FTPDAVTFTSLIKIL 404
           S    PD+ TYN +I+  CK+G+++   VI  ++  S    PD VT++++I  L
Sbjct: 386 S----PDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGL 435



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 4/175 (2%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + + M       P V +++ +   L K+        L  R+   G  PD  TY  +
Sbjct: 407 EAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTI 466

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK GR+     +L  + R+   P+ VT+T+LI  LC   ++ EA  +  ++R  GC
Sbjct: 467 IDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGC 526

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
             ++ TYNT++NGLC +G    A  L + M +G  E    C PDA TY TI++ L
Sbjct: 527 PPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAE----CSPDAATYRTIVNAL 577



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 132/286 (46%), Gaps = 39/286 (13%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           F+  A ++ SL++ L    +  EA  LF    +  CE DV +YN +I+G C  G    AL
Sbjct: 73  FSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAAL 132

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---GSANFL-GFSC----------M 261
            L EEM +    F     PDA T++ II  +       G+ + L    C          +
Sbjct: 133 ELLEEMKSAG--FA----PDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALI 186

Query: 262 ASFSALNKMAFYFPL---VRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLM 315
           A+F+   K+     L   +R +    N +    L+D LCK+S +  A+++ + +   G  
Sbjct: 187 AAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFA 246

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           PNV+T+N L+ G C  G +D+ +       L   + + G+ P++ TY+ LI+  CK  + 
Sbjct: 247 PNVMTFNSLVDGFCKRGNVDDARK------LLGIMVAKGMRPNVVTYSALIDGLCKSQKF 300

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQVA 414
                +   +     TPDA T+++LI       KI E     R++A
Sbjct: 301 LEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMA 346



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 8/177 (4%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYTYNI 130
           EA      M   R S P V ++N +   L K         + +++  +G + PD  TY+ 
Sbjct: 372 EAQKTLQEMRKQRKS-PDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYST 430

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     +L R+ ++   PD VT+T++I  LC   R+ EA  L   ++  G
Sbjct: 431 VINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG 490

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
           C  +V TY TLI+GLC+      A  + EEM N        C P+ +TY+T+++GLC
Sbjct: 491 CAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAG------CPPNLVTYNTMVNGLC 541



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  +   L K    +    L + +   G  P+  TY  LI+  CK  +V     V
Sbjct: 458 PDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERV 517

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR--VFGCELDVFTYNTLINGL 205
           +  +  +   P+ VT+ +++  LC   RI EA  L  +++     C  D  TY T++N L
Sbjct: 518 MEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNAL 577

Query: 206 CRTGHTIVALNLFEEM 221
             +     A  L E+M
Sbjct: 578 MSSDLVQEAEQLLEQM 593


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 169/331 (51%), Gaps = 28/331 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F YM+  RP  P V  F  L G + +    D V+SL K++ +  +  + Y++ I
Sbjct: 63  DDAIDLFGYMVRSRP-LPSVIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTI 121

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+ CFC   ++       G+I +  F P  VTF +L+  LC E RI EA  LF ++    
Sbjct: 122 LMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM---- 177

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+ +V T+ TL+NGLCR G  + A+ L + M     E G+  +P+ ITY TI+DG+CK  
Sbjct: 178 CKPNVVTFTTLMNGLCREGRVVEAVALLDRML----EDGL--QPNQITYGTIVDGMCKMG 231

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            + + L          + +++   P V +      +  +IDGL K  +   A  LF  + 
Sbjct: 232 DTVSALNL-----LRKMEEVSHIIPNVVI------YNTIIDGLWKDGRHSDAHNLFIEMQ 280

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
              + P++VTYN +I G C  G+  + +       L + +    + PD+ T++ LIN F 
Sbjct: 281 EKEIFPDIVTYNCMINGFCISGRWSDAEQ------LLQEMLERKINPDVVTFSALINAFV 334

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G+      ++  +LP    P  VT++S+I
Sbjct: 335 KEGKFFEAEELYDEMLPRSIIPSTVTYSSMI 365



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 161/363 (44%), Gaps = 76/363 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  +N +   L K   +    +LF  +    +FPD  TYN +IN FC  GR S    +
Sbjct: 251 PNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQL 310

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL--------------------- 186
           L  +L     PD VTF++LI     E +  EA  L+ ++                     
Sbjct: 311 LQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCK 370

Query: 187 --------RVF------GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
                    +F      GC  D+ T+NTLI G CR       + L  EM     E G+V 
Sbjct: 371 QNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMT----EAGLVA 426

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL---CL 289
             + ITY+T+I G C + G  N       A+   L +M           +C N +    L
Sbjct: 427 --NTITYTTLIHGFC-QVGDLN-------AAQDLLQEMI-------SSGVCPNVVTCNTL 469

Query: 290 IDGLCKISKLKIARELFQSLPRA-----------GLMPNVVTYNILIRGLCNDGQMDETK 338
           +DGLC   KLK A E+F+++ ++           G+ P+V TYNILI GL N+G+  E +
Sbjct: 470 LDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAE 529

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  L++ +   G+ PD  TY+ +I+  CK  R+     +F  +    F+PD VTF 
Sbjct: 530 E------LYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFN 583

Query: 399 SLI 401
           +LI
Sbjct: 584 TLI 586



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 148/325 (45%), Gaps = 27/325 (8%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS- 142
           R   P V +F+ L     K   +     L+  +    + P   TY+ +I+ FCK  R+  
Sbjct: 317 RKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDA 376

Query: 143 --HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
             H F +     + C +PD +TF +LI   C   R+ +   L  ++   G   +  TY T
Sbjct: 377 AEHMFYLTPT--KGC-SPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTT 433

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+G C+ G    A +L +EM +       VC P+ +T +T++DGLC      + L    
Sbjct: 434 LIHGFCQVGDLNAAQDLLQEMISSG-----VC-PNVVTCNTLLDGLCDNGKLKDALEM-- 485

Query: 261 MASFSALNKMAFYF----PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
              F A+ K         P   V+     +  LI GL    K   A EL++ +P  G++P
Sbjct: 486 ---FKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVP 542

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           + +TY+ +I GLC   ++DE         +F  + S    PD+ T+N LI  +CK G V 
Sbjct: 543 DTITYSSMIDGLCKQSRLDEATQ------MFDSMGSKSFSPDVVTFNTLITGYCKAGMVD 596

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
            G  +F  +       DA+T+ +LI
Sbjct: 597 DGLELFCEMGQRGIVADAITYITLI 621



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 144/335 (42%), Gaps = 24/335 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++D ML  R   P   +++ +     K    D    +F      G  PD  T+N L
Sbjct: 341 EAEELYDEMLP-RSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTL 399

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  +C+  RV  G  +L  +  +    + +T+T+LI   C    +  A  L  ++   G 
Sbjct: 400 IAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGV 459

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-----CEPDAITYSTIIDGL 246
             +V T NTL++GLC  G    AL +F+ M     +          EPD  TY+ +I GL
Sbjct: 460 CPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGL 519

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
             E              F    ++    P   +    + +  +IDGLCK S+L  A ++F
Sbjct: 520 INEG------------KFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMF 567

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            S+      P+VVT+N LI G C  G +D+         LF  +   G+  D  TY  LI
Sbjct: 568 DSMGSKSFSPDVVTFNTLITGYCKAGMVDDG------LELFCEMGQRGIVADAITYITLI 621

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             F K+  +     IF  ++ S   PD +T  +++
Sbjct: 622 YGFRKVDNIDGALDIFQEMISSGVYPDTITIRNML 656



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++NIL   L     +     L++ +   G+ PD  TY+ +I+  CK  R+     
Sbjct: 506 EPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQ 565

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +    F+PD VTF +LI   C    + +   LF ++   G   D  TY TLI G  
Sbjct: 566 MFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFR 625

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           +  +   AL++F+EM +     GV   PD IT   ++ GL
Sbjct: 626 KVDNIDGALDIFQEMISS----GVY--PDTITIRNMLTGL 659



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 55/139 (39%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++ +   L K    D    +F  +      PD  T+N LI  +CK G V  G  +
Sbjct: 542 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLEL 601

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + +     DA+T+ +LI        I  A  +F ++   G   D  T   ++ GL  
Sbjct: 602 FCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWS 661

Query: 208 TGHTIVALNLFEEMANGNG 226
                 A+ + E++    G
Sbjct: 662 KEELERAVAMLEDLQMSVG 680



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD M   +   P V +FN L     K    D  L LF  +   G+  D  TY  
Sbjct: 561 DEATQMFDSM-GSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYIT 619

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           LI  F K+  +     +   ++ S   PD +T  +++  L ++  +  A A+   L++
Sbjct: 620 LIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLEDLQM 677


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 180/355 (50%), Gaps = 37/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F  M+ M+P  P V  F+ LF  +   KHY  V+SLF+ + + G+       NI
Sbjct: 44  DDAVSLFHRMVRMKP-LPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVF 189
           + N +C   R+   F VL   L++    + VTF +L+  L AE+++ +A  LF KL R  
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREK 162

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            CE +   Y T++NGL + GHT   L+L   M  GN       +PD  TYS +ID LCK+
Sbjct: 163 ICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGN------TKPDVRTYSIVIDALCKD 216

Query: 250 ---AGSANFLG-----------FSCMASFSALNKMAFYFPLVRVQCLCLN---------F 286
                + N L            F+  +    L K+  +  +  +    +N         F
Sbjct: 217 INLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTF 276

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LIDGLCK  K++ A E+ + +   G+ P+++TY+ ++ G C  GQ+D  +       +
Sbjct: 277 SILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARR------V 330

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           F  L   G+ P++++Y+ILIN +CK   ++    +FG I      PD VT+++++
Sbjct: 331 FNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTIL 385



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 164/344 (47%), Gaps = 37/344 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L   L K   ++ V +L   +    + P+ +T++ILI+  CK G+V     V
Sbjct: 236 PNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEV 295

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  ++     PD +T+++++   C   ++  A  +F  LR  G + ++F+Y+ LING C+
Sbjct: 296 MRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCK 355

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMAS-- 263
             +   A+ LF E++          +PD +TYSTI+ GL +    G A  + F  M    
Sbjct: 356 KKNLAKAMQLFGEISQKG------LKPDTVTYSTILHGLIEVGRIGDAKKI-FDEMLRVG 408

Query: 264 -------FSALNKMAFYFPLVRVQCLCLN-------------FLCLIDGLCKISKLKIAR 303
                   S L    F + LV    L  +             +  +I+GLCK  +++ A 
Sbjct: 409 PTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAH 468

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            +F+ LP  GL+P+V TYN++I G C +G  DE K       + +++   G   +  TYN
Sbjct: 469 AIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKG------ILRKMEDNGCPANNITYN 522

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           +++  F +  ++S        +    F+ DA T   LI +L+ N
Sbjct: 523 VIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVLKEN 566



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 41/207 (19%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + S++IL     K K+    + LF  ++  GL PD  TY+ +++   ++GR+     
Sbjct: 340 KPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKK 399

Query: 147 VLGRILRSCFTPDAVT-----------------------------------FTSLIKDLC 171
           +   +LR   TPD                                      +T +I  LC
Sbjct: 400 IFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLC 459

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
              R+ EA A+F KL   G   DV TYN +I G CR G       +  +M + NG     
Sbjct: 460 KNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMED-NG----- 513

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGF 258
           C  + ITY+ I+ G  +    +  + F
Sbjct: 514 CPANNITYNVIMQGFFRSNKISEIVSF 540



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 7/175 (4%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +FD ML + P+        +LFG   K    +  + LF +L       +   Y ++
Sbjct: 396 DAKKIFDEMLRVGPTPDICLHSTLLFGYF-KYGLVEEAMLLFSKLERNREDTNISFYTVV 454

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK  RV     +  ++      PD  T+  +I   C E    E   +  K+   GC
Sbjct: 455 INGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGC 514

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
             +  TYN ++ G  R+      ++  +EMA     F      DA T   +I+ L
Sbjct: 515 PANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSF------DATTTGVLINVL 563


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 185/361 (51%), Gaps = 44/361 (12%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNEALCVFDYML-NMRPSRPPVTSFNILFGCLAKTKHY 106
            LE+F+ +R +S       S+  ++AL +FD +L + RP+   VT+FN L   +++    
Sbjct: 116 QLERFIADRAQSG------SLASHDALKLFDLLLPHARPA--SVTAFNHLLTAVSRASGR 167

Query: 107 DTVL------SLFKRLNLT---GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 157
            + L      SLF R+       + PDR TY+ILI CFC+MGR+ HGF V G IL++ + 
Sbjct: 168 HSTLESQLGISLFDRMVRECSDKVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWR 227

Query: 158 PDAVTFTSLIKDLCAESRIMEAA-ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
            + + F  L+K LC   R+ EA   L  ++  FGC  +V +YNTL+ G C       AL 
Sbjct: 228 VNHIVFNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALE 287

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           L   MA+     G+ C PD ++Y+T+I+G  +E G  +           A N    +  +
Sbjct: 288 LLHVMADDQ---GLSCPPDVVSYNTVINGFFRE-GQVD----------KAYN---LFLQM 330

Query: 277 VR--VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
           +   +    + +  +IDGLCK   +  A+ +FQ +   G+ P+  TYN LI G  + G+ 
Sbjct: 331 IDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGK- 389

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
                ++ V  L + +++  L PD + Y +L++  CK GR +    IF  ++     PDA
Sbjct: 390 -----WKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKPDA 444

Query: 395 V 395
           +
Sbjct: 445 M 445



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 32/343 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+N +     +    D   +LF ++   G+ PD  TYN +I+  CK   V     V
Sbjct: 302 PDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAV 361

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++L     P   T+  LI    +  +  E   L  ++     E D F Y  L++ LC+
Sbjct: 362 FQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCK 421

Query: 208 TGHTIVALNLFEE-MANGNGEFGVVCE--------------PDAITYSTIIDGLCKEAGS 252
            G    A N+F+  +  G     ++ E              P+ + Y  +ID LCK    
Sbjct: 422 NGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRV 481

Query: 253 ANFL-----------GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
            + +           G   +  +    ++ F      ++   + F  L+  LC+  ++  
Sbjct: 482 DDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVME 541

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A+ L + + R G+ P+V++YN L+ G C  G+ DE      V +      S GL P+ +T
Sbjct: 542 AQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMV------SIGLKPNEFT 595

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           YN L++ +CK  R+   + +   +L +  TPD VT+ +++  L
Sbjct: 596 YNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGL 638



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 139/318 (43%), Gaps = 26/318 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R  V  FN L   L +         L + +   G+ PD  +YN L++  C  GR      
Sbjct: 520 RLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAK 579

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++     P+  T+ +L+   C   RI +A +L  ++ + G   DV TYNT+++GL 
Sbjct: 580 LLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLF 639

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-EAGSANFLGFSCMASFS 265
           +TG    A  L+  M N   ++      D  TY+ I++GLCK       F  F  + S  
Sbjct: 640 QTGRFSEAKELYLNMINSRTQW------DMYTYNIILNGLCKNNCVDEAFKMFQSLCSKG 693

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                        +Q   + F  +I  L K  K + A +LF ++   GL+P+V TY ++ 
Sbjct: 694 -------------LQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIA 740

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
             L  +G ++E      + +LF  +   G  P+    N L+  F   G +S       ++
Sbjct: 741 ENLIKEGSLEE------LGVLFSAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKL 794

Query: 386 LPSCFTPDAVTFTSLIKI 403
               F+ +A T + LI +
Sbjct: 795 DEKNFSLEASTASMLISL 812



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 106/236 (44%), Gaps = 29/236 (12%)

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCR------TGHTIVALNLFEEMANGNGEFGVV 231
           +A  LF  L        V  +N L+  + R      T  + + ++LF+ M     E    
Sbjct: 134 DALKLFDLLLPHARPASVTAFNHLLTAVSRASGRHSTLESQLGISLFDRMVR---ECSDK 190

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
             PD  TYS +I   C+     +  GF   A F  + K  +     RV  +  N   L+ 
Sbjct: 191 VAPDRCTYSILIGCFCRMGRLEH--GF---AVFGLILKTGW-----RVNHIVFN--QLLK 238

Query: 292 GLCKISKLKIARE-LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           GLC   +L  A   L   +P  G  PNVV+YN L++G CN     E +  E + LL    
Sbjct: 239 GLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCN-----ENRAEEALELLHVMA 293

Query: 351 NSTGLF--PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +  GL   PD+ +YN +IN F + G+V   + +F +++     PD VT+ ++I  L
Sbjct: 294 DDQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGL 349



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 58/131 (44%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + +FNI+ G L K    +  + LF  ++  GL PD  TY ++     K G +    V+  
Sbjct: 698 IITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFS 757

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +  +   P++    +L++       I  A A  +KL      L+  T + LI+   R  
Sbjct: 758 AMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASMLISLYSRGE 817

Query: 210 HTIVALNLFEE 220
           +  +A +L E+
Sbjct: 818 YQQLAKSLPEK 828


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 168/335 (50%), Gaps = 29/335 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F+ +L   P+ PP   FN + G L K+KHY TVLSL +++   G+ P+ +  NI
Sbjct: 68  DDAVSLFNRLLRQNPT-PPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNI 126

Query: 131 LINCFCKMG----RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           LI CFC++G    ++   F+   +++   F  D V++ +LI  LC       A  L  ++
Sbjct: 127 LIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRV 186

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
                +L+   YNT+I G+C+  H   A +L+ EM +          P+ +TYS +I G 
Sbjct: 187 DGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKG------ISPNVVTYSALISGF 240

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
                   F+      +    NK+     L  ++     F  L+DG CK  K+K  + +F
Sbjct: 241 --------FVVGKLKDAIDLFNKII----LENIKPDGYTFNILVDGFCKDRKMKEGKTVF 288

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             + + G++P+VVTYN L+ G C        K   T   +F  +   G+ PD+ +YNILI
Sbjct: 289 AMMMKQGIIPDVVTYNSLMDGYC------LVKEVNTAKSIFNTMAQGGVNPDIRSYNILI 342

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N FCKI +V     +F  +      P+ VT+ SLI
Sbjct: 343 NGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLI 377



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 150/344 (43%), Gaps = 52/344 (15%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  ++  M++   S P V +++ L             + LF ++ L  + PD YT+NI
Sbjct: 212 NDAFDLYSEMVSKGIS-PNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNI 270

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ FCK  ++  G  V   +++    PD VT+ SL+   C    +  A ++F  +   G
Sbjct: 271 LVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGG 330

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ +YN LING C+      A+NLF EM   N        P+ +TY+++IDGL K  
Sbjct: 331 VNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKN------IIPNVVTYNSLIDGLSKSG 384

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARE 304
                             ++++   LV       V    L +  +ID L K  ++  A  
Sbjct: 385 ------------------RISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIA 426

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L       G+ P++ TY ILI GLC     D T                     + TYN+
Sbjct: 427 LITKFKDQGIQPSMYTYTILIDGLCKVEGYDIT---------------------VNTYNV 465

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
           +I+ FCK G       +  ++  S   P+AVT+   I+ L  N+
Sbjct: 466 MIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNN 509



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 113/269 (42%), Gaps = 39/269 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L       K  +T  S+F  +   G+ PD  +YNILIN FCK+ +V     +
Sbjct: 298 PDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNL 357

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      P+ VT+ SLI  L    RI  A  L  ++   G   ++ TYN++I+ L +
Sbjct: 358 FNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFK 417

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           T     A+ L  +  +         +P   TY+ +IDGLCK  G                
Sbjct: 418 THQVDKAIALITKFKDQG------IQPSMYTYTILIDGLCKVEG---------------- 455

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                Y   V        +  +I G CK      A  L   +  +  +PN VTY I IR 
Sbjct: 456 -----YDITVNT------YNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRS 504

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLF 356
           L ++ + D+ +       LF+ + + GL 
Sbjct: 505 LLDNNENDKAEK------LFREMITRGLL 527



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 17/202 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S+NIL     K K  D  ++LF  ++   + P+  TYN LI+   K GR+S+   +
Sbjct: 333 PDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQL 392

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + ++      P+ +T+ S+I  L    ++ +A AL TK +  G +  ++TY  LI+GLC+
Sbjct: 393 VDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCK 452

Query: 208 TGHTIVALNLFEEMANGNGEFGVV--------------CEPDAITYSTIIDGLC--KEAG 251
                + +N +  M +G  + G+               C P+A+TY   I  L    E  
Sbjct: 453 VEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNEND 512

Query: 252 SANFLGFSCMASFSALNKMAFY 273
            A  L F  M +   LN+ A Y
Sbjct: 513 KAEKL-FREMITRGLLNRSASY 533


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 147/331 (44%), Gaps = 97/331 (29%)

Query: 116 LNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP----------------- 158
           + L GLFPD +T+NILINC C + RV+ G   +  I+R  + P                 
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSML 60

Query: 159 ---------------------------DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
                                      D VT+++LIK LC E RI EA  LF  ++  GC
Sbjct: 61  IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGC 120

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D  TY TL+ GLC+TG+  +AL L +EM N  G +G+ C+P  I+YS IIDGLCK+  
Sbjct: 121 RPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRR 180

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                             ARELF+ +  
Sbjct: 181 EDE-----------------------------------------------ARELFKEMKA 193

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+MP+V++Y  LI G C+ G+ ++ K       LF  +   G+ PD+ T  +LI+ FCK
Sbjct: 194 QGMMPDVISYTSLIHGFCHSGKWEKAK------CLFNEMLDVGIQPDVTTSGVLIDMFCK 247

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            G+V     +   ++      D VT+++LIK
Sbjct: 248 EGKVIEANELLEVMVHRGCILDIVTYSTLIK 278



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 174/361 (48%), Gaps = 38/361 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F+ M   +   P V S+  L      +  ++    LF  +   G+ PD  T ++
Sbjct: 475 DEARELFEEM-KAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSV 533

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G+V     +L  +++     D VT T+L+K LC + RI +A  LF K++  G
Sbjct: 534 LIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLG 593

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
           C  +V T  TL+ GLC++G+  +AL L + M +    +G+ C+P+AI+YS IIDGLCK  
Sbjct: 594 CMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCG 653

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVR----------------------VQCLCLNF 286
               A  L F  M +   +  +  Y  L+                       VQ     F
Sbjct: 654 REDEAREL-FKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTF 712

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LID LCK  K+  A EL + + + G +PN VTY  L++GLC + ++ E         L
Sbjct: 713 SVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQ------L 766

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC------FTPDAVTFTSL 400
           F ++   G  PD+ TY  L+   C+ G + +   +  ++L         F PD ++++ +
Sbjct: 767 FMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSII 826

Query: 401 I 401
           I
Sbjct: 827 I 827



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 151/323 (46%), Gaps = 60/323 (18%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKR-LNLTGLF------PDRYTYNILINCFCKMG 139
           RP   ++  L   L +T   +  L L +  LN T  +      PD  T ++LI+  CK G
Sbjct: 302 RPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEG 361

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           +V     +L  +++     D VT+++LIK LC E RI EA  LF  ++  GC  D  TY 
Sbjct: 362 KVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYG 421

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TL+ GLC+TG+  +AL L +EM N  G +G+ C+P  I+YS IIDGLCK+          
Sbjct: 422 TLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDE----- 476

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
                                                     ARELF+ +   G+MP+V+
Sbjct: 477 ------------------------------------------ARELFEEMKAQGIMPDVI 494

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           +Y  LI G C  G+ ++ K       LF  +   G+ PD+ T ++LI+  CK G+V    
Sbjct: 495 SYTTLIHGFCLSGKWEKAK------CLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEAN 548

Query: 380 VIFGRILPSCFTPDAVTFTSLIK 402
            +   ++      D VT T+L+K
Sbjct: 549 KLLEVVIQRGCILDVVTCTTLVK 571



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 140/292 (47%), Gaps = 53/292 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+  L     ++  +     LF  +   G+ PD  T+++LI+  CK G+V     +
Sbjct: 672 PDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANEL 731

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +++    P+ VT+T+L+K LC   RI EA  LF K++  GC  DV TY TL+ GLC+
Sbjct: 732 LEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQ 791

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           TG+   AL L ++M +  G++G   +PD I+YS IIDGLCK                   
Sbjct: 792 TGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDE------------- 838

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                             ARELF+ +   G++PNV++Y  LI G
Sbjct: 839 ----------------------------------ARELFKEMKALGVIPNVISYTSLIHG 864

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            C  G++++ KH      LF  +   G+  +  TY+++I+ FCK G++    
Sbjct: 865 FCRSGKLEDAKH------LFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 910



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 170/400 (42%), Gaps = 80/400 (20%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + S++I+   L K +  D    LFK +   G+ PD  +Y  LI+ FC  G+      
Sbjct: 162 KPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKC 221

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI---- 202
           +   +L     PD  T   LI   C E +++EA  L   +   GC LD+ TY+TLI    
Sbjct: 222 LFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLC 281

Query: 203 -------------------------------NGLCRTGHTIVALNLFEEMANGNGEFGVV 231
                                           GLC+TG   +AL+L +EM N   ++G+ 
Sbjct: 282 MKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIK 341

Query: 232 C-EPDAITYSTIIDGLCKEAG--SANFLGFSCMASFSALNKMAFYFPLVRVQCL------ 282
           C  PD  T S +ID LCKE     AN L    M     +  +  Y  L++  C+      
Sbjct: 342 CIRPDVTTSSMLIDILCKEGKVIEANEL-LEVMIQRGCILDIVTYSTLIKGLCMEHRISE 400

Query: 283 ----------------CLNFLCLIDGLCKISKLKIARELFQSL----PRAGL--MPNVVT 320
                            + +  L+ GLC+   + IA +L Q +     R G+   P +++
Sbjct: 401 ATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLIS 460

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+I+I GLC D + DE +       LF+ + + G+ PD+ +Y  LI+ FC  G+      
Sbjct: 461 YSIIIDGLCKDRREDEARE------LFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKC 514

Query: 381 IFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           +F  +L     PD  T + LI       K++E N     V
Sbjct: 515 LFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVV 554



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 139/324 (42%), Gaps = 65/324 (20%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + S++I+   L K +  D    LF+ +   G+ PD  +Y  LI+ FC  G+      
Sbjct: 455 KPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKC 514

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L     PD  T + LI  LC + +++EA  L   +   GC LDV T  TL+ GLC
Sbjct: 515 LFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLC 574

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A  LF +M        + C P+ +T +T                         
Sbjct: 575 MKHRISKATQLFLKMQK------LGCMPNVVTCAT------------------------- 603

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL-----PRA-GLMPNVVT 320
                                 L+ GLC+   +KIA EL +++     P      PN ++
Sbjct: 604 ----------------------LMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAIS 641

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+I+I GLC  G+ DE +       LFK + + G+ PD+ +Y  LI+ FC+ G+      
Sbjct: 642 YSIIIDGLCKCGREDEARE------LFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKY 695

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           +F  ++     PD  TF+ LI +L
Sbjct: 696 LFNEMVDIGVQPDVTTFSVLIDML 719



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 136/287 (47%), Gaps = 34/287 (11%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+  +Y+I+I+  CK GR      +   +      PD +++TSLI   C   +  +A  L
Sbjct: 637 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 696

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F ++   G + DV T++ LI+ LC+ G  I A  L E M          C P+ +TY+T+
Sbjct: 697 FNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRG------CIPNTVTYTTL 750

Query: 243 IDGLC--KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           + GLC       A  L F  M     L  +  Y  L++             GLC+   +K
Sbjct: 751 VKGLCMNDRISEATQL-FMKMQKLGCLPDVVTYGTLMK-------------GLCQTGNIK 796

Query: 301 IARELFQSLPR------AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
            A EL + +            P+V++Y+I+I GLC  G+ DE +       LFK + + G
Sbjct: 797 TALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARE------LFKEMKALG 850

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + P++ +Y  LI+ FC+ G++     +F  ++      +AVT++ +I
Sbjct: 851 VIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMI 897



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKR-LNLTGLF-----PDRYTYNILINCFCKMGRV 141
           P V ++  L   L +T +  T L L K+ L+ TG +     PD  +Y+I+I+  CK GR 
Sbjct: 777 PDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGRE 836

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                +   +      P+ +++TSLI   C   ++ +A  LF ++   G +L+  TY+ +
Sbjct: 837 DEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVM 896

Query: 202 INGLCRTGHTIVALNLFEEM 221
           I+G C+ G    A  LF++M
Sbjct: 897 IHGFCKEGQIDKA--LFQKM 914



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V S++I+   L K    D    LFK +   G+ P+  +Y  LI+ FC+ G++     
Sbjct: 817 KPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKH 876

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           +   ++      +AVT++ +I   C E +I    ALF K+ 
Sbjct: 877 LFNEMVDQGVQLNAVTYSVMIHGFCKEGQI--DKALFQKME 915


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 158/317 (49%), Gaps = 28/317 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++  +   LAK K     ++L +++   G  P   TYN L+N  CKMGR+     +L 
Sbjct: 34  IHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR 93

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           +I+ +  TPD VT+TSLI  L  + R  EA  LF ++   G  LD   Y  LI GL + G
Sbjct: 94  KIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAG 153

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSAL 267
               A ++++ M +        C PD +T ST+IDGLCK    G+A  +  S  A   A 
Sbjct: 154 KIPQASSVYKTMTSQG------CVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAP 207

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N++ +                LI GLCK  K+  A E+   + +A   P+ +TYNILI G
Sbjct: 208 NEVVYS--------------ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDG 253

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G +   + +      F  +   G  PD+YTYNILI+ FCK G   +   +F  +  
Sbjct: 254 LCKSGDVAAARAF------FDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSS 307

Query: 388 SCFTPDAVTFTSLIKIL 404
           S  +P+ VT+ +LI  L
Sbjct: 308 SRCSPNVVTYGTLISGL 324



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 145/298 (48%), Gaps = 32/298 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V + + +   L K       + +FK +   GL P+   Y+ LI+  CK  ++     +
Sbjct: 172 PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 231

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++ ++  TPD +T+  LI  LC    +  A A F ++   GC+ DV+TYN LI+G C+
Sbjct: 232 LAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCK 291

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+T  A  +F++M++        C P+ +TY T+I GLCK                  L
Sbjct: 292 AGNTDAACGVFDDMSSSR------CSPNVVTYGTLISGLCKR---------------RQL 330

Query: 268 NKMAFYFPLVRVQ-CLCLNFL--CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            K + Y+  ++ + C   +F+   L+DGLCK  KL+    LF  + R+G+  N  T   L
Sbjct: 331 TKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRL 389

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           I  LC   ++DE         LF  +   G+ P  Y YN +I+   K G+V+ G  ++
Sbjct: 390 IFHLCKANRVDE------AVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVY 440



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 129/303 (42%), Gaps = 29/303 (9%)

Query: 36  TATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNI 95
           T T +  V D  +L   +   CK+   G         A+ +F  M   R   P    ++ 
Sbjct: 164 TMTSQGCVPDVVTLSTMIDGLCKAGRIG--------AAVRIFKSM-EARGLAPNEVVYSA 214

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
           L   L K +  D  L +  ++      PD  TYNILI+  CK G V+        +L + 
Sbjct: 215 LIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAG 274

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             PD  T+  LI   C       A  +F  +    C  +V TY TLI+GLC+      A 
Sbjct: 275 CKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKAS 334

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
             ++ M     E G  C PD+  YS+++DGLCK    +  L   CM  F  + +      
Sbjct: 335 LYYQHMK----ERG--CPPDSFVYSSLVDGLCK----SGKLEGGCML-FDEMERSGVANS 383

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
             R +        LI  LCK +++  A  LF ++ + G MP+   YN +I  L   G+++
Sbjct: 384 QTRTR--------LIFHLCKANRVDEAVSLFNAIRKEG-MPHPYAYNSIISALIKSGKVN 434

Query: 336 ETK 338
           E +
Sbjct: 435 EGQ 437



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 4/151 (2%)

Query: 72  EALC-VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +A C VFD M + R S P V ++  L   L K +        ++ +   G  PD + Y+ 
Sbjct: 296 DAACGVFDDMSSSRCS-PNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSS 354

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G++  G ++   + RS    ++ T T LI  LC  +R+ EA +LF  +R  G
Sbjct: 355 LVDGLCKSGKLEGGCMLFDEMERS-GVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEG 413

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
                + YN++I+ L ++G       +++EM
Sbjct: 414 MP-HPYAYNSIISALIKSGKVNEGQAVYQEM 443


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 176/334 (52%), Gaps = 29/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +++L +F +M+  RP  P +  F+ L   ++K K YD V+ L++++ + G+  +  T NI
Sbjct: 63  DDSLDLFFHMVQCRP-LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+NCFC+  ++S     LG++++    P  VTF SL+   C   R+ +A  +F ++   G
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            + +V  YNT+I+GLC++     AL+L   M  +G G       PD +TY+++I GLC  
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIG-------PDVVTYNSLISGLCSS 234

Query: 250 AGSANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
              ++     SCM            +P V        F  LID   K  ++  A E ++ 
Sbjct: 235 GRWSDATRMVSCMTKREI-------YPDV------FTFNALIDACVKEGRVSEAEEFYEE 281

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + R  L P++VTY++LI GLC   ++DE +       +F  + S G FPD+ TY+ILIN 
Sbjct: 282 MIRRSLDPDIVTYSLLIYGLCMYSRLDEAEE------MFGFMVSKGCFPDVVTYSILING 335

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +CK  +V  G  +F  +       + VT+T LI+
Sbjct: 336 YCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQ 369



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 167/349 (47%), Gaps = 32/349 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL +FD M+ M   +P V  +N +   L K+K  D  L L  R+   G+ PD  TYN L
Sbjct: 169 DALYMFDQMVGM-GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSL 227

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  C  GR S    ++  + +    PD  TF +LI     E R+ EA   + ++     
Sbjct: 228 ISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL 287

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + D+ TY+ LI GLC       A  +F  M +        C PD +TYS +I+G CK   
Sbjct: 288 DPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKG------CFPDVVTYSILINGYCKSKK 341

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             + +   C  S   + +    + +            LI G C+  KL +A E+F+ +  
Sbjct: 342 VEHGMKLFCEMSQRGVVRNTVTYTI------------LIQGYCRAGKLNVAEEIFRRMVF 389

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+ PN++TYN+L+ GLC++G++      E   ++   +   G+  D+ TYNI+I   CK
Sbjct: 390 CGVHPNIITYNVLLHGLCDNGKI------EKALVILADMQKNGMDADIVTYNIIIRGMCK 443

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL-------EINSFFRQV 413
            G V+  + I+  +      PD  T+T+++  L       E ++ FR++
Sbjct: 444 AGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKM 492



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 18/234 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P + ++++L   L      D    +F  +   G FPD  TY+ILIN +CK  +V H
Sbjct: 285 RSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEH 344

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
           G  +   + +     + VT+T LI+  C   ++  A  +F ++   G   ++ TYN L++
Sbjct: 345 GMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLH 404

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GLC  G    AL +  +M   NG      + D +TY+ II G+CK    A+     C  +
Sbjct: 405 GLCDNGKIEKALVILADMQK-NG-----MDADIVTYNIIIRGMCKAGEVADAWDIYCSLN 458

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
              L       P +        +  ++ GL K    + A  LF+ +   G++PN
Sbjct: 459 CQGL------MPDI------WTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 160/326 (49%), Gaps = 26/326 (7%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VFD M   R  +P V +FN L   + + +  D V  L+K ++  G+ PD YTY  LI  F
Sbjct: 208 VFDEM--RRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGF 265

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ GR+ +   +   +  +   P+AV FT+LI   C E  +     L+  +RV G   D+
Sbjct: 266 CRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDL 325

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             YN L+NGLCR  +   A ++ EEM N         +PD +TY+T+IDG CK+      
Sbjct: 326 VAYNALVNGLCRARNLKAAESIVEEMKNAG------LKPDKVTYTTLIDGCCKD------ 373

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
            G   MA      KMA       V    + +  LI GL K  +   A  + + +  A L 
Sbjct: 374 -GKLDMA-MDIKQKMAEK----EVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALE 427

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+  TY ++I   C  G +      +T F L K + + G  P + TYN+++N  CK+G++
Sbjct: 428 PDNTTYTMVIDAFCRKGDV------KTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQM 481

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
            +  ++   +L    +PD +T+  L+
Sbjct: 482 KNADMLLHAMLNIGVSPDDITYNILL 507



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 9/164 (5%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++  L   L+K         + + +    L PD  TY ++I+ FC+ G V  GF +L  +
Sbjct: 397 TYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEM 456

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 P  VT+  ++  LC   ++  A  L   +   G   D  TYN L++G C+ G  
Sbjct: 457 QNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKV 516

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             +    EE+ +  G       PD   Y+++I  L K+  + N+
Sbjct: 517 ANS----EELESSKGMV-----PDFAVYTSLISELAKKKPAKNY 551



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 28/118 (23%)

Query: 312 AGLMPNVVTYNILIRGLCNDGQM-------DE---------------------TKHYETV 343
           AG+ P    +N+L+R     G++       DE                      +  + V
Sbjct: 180 AGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRSVQPTVVTFNTLISGMCRARDLDAV 239

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             L+K ++  G+ PD+YTY  LI  FC+ GR+ +   +F  +  +   P+AV FT+LI
Sbjct: 240 DGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLI 297



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 3/121 (2%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P  T++ ++     +     T   L K +   G  P   TYN+++N  CK+G++ +  +
Sbjct: 427 EPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADM 486

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +L    +PD +T+  L+   C   ++  +  L +     G   D   Y +LI+ L 
Sbjct: 487 LLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEELESS---KGMVPDFAVYTSLISELA 543

Query: 207 R 207
           +
Sbjct: 544 K 544



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 23/181 (12%)

Query: 8   NGRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRA----SLEQFLKERCKSSGEG 63
           +G++  A  + +K    ++E E S    T T  ++   +A      E+ L+E  +++ E 
Sbjct: 373 DGKLDMAMDIKQK----MAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEP 428

Query: 64  DITSITPN-EALC----------VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSL 112
           D T+ T   +A C          +   M N +  +P V ++N++   L K         L
Sbjct: 429 DNTTYTMVIDAFCRKGDVKTGFKLLKEMQN-KGKKPGVVTYNVIMNGLCKLGQMKNADML 487

Query: 113 FKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
              +   G+ PD  TYNIL++  CK G+V++   +          PD   +TSLI +L  
Sbjct: 488 LHAMLNIGVSPDDITYNILLDGQCKHGKVANSEELES---SKGMVPDFAVYTSLISELAK 544

Query: 173 E 173
           +
Sbjct: 545 K 545


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 154/314 (49%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L   L K            R+   G  PD +TYN +I+ +CK G +     +
Sbjct: 278 PDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATEL 337

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L   +   F PD VT+ SLI  LCAE  I  A  LF + +    + D+  YN+L+ GLCR
Sbjct: 338 LKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCR 397

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  + AL +  EM     E G  C PD  TY+ II+GLCK    ++    + +    A+
Sbjct: 398 QGLILHALQVMNEMV----EEG--CHPDIWTYNIIINGLCKMGNISD----AAVVMNDAI 447

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K   Y P V        F  LIDG CK  KL  A +L + +   G+ P+V+TYN ++ G
Sbjct: 448 VK--GYLPDV------FTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNG 499

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G+  E    ET    F+ +   G  P+  TYNILI  FCKI ++     +  R+  
Sbjct: 500 LCKAGKAKEVN--ET----FEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQ 553

Query: 388 SCFTPDAVTFTSLI 401
               PDAV+F +LI
Sbjct: 554 DGLVPDAVSFNTLI 567



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 158/371 (42%), Gaps = 45/371 (12%)

Query: 43  VKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAK 102
           V DR +    +   C    EGDI       AL +F+     +  +P +  +N L   L +
Sbjct: 347 VPDRVTYCSLINGLC---AEGDI-----ERALELFNEA-QAKDLKPDLVVYNSLVKGLCR 397

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
                  L +   +   G  PD +TYNI+IN  CKMG +S   VV+   +   + PD  T
Sbjct: 398 QGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFT 457

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
           F +LI   C   ++  A  L  ++  +G   DV TYN+++NGLC+ G        FEEM 
Sbjct: 458 FNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMI 517

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
                    C P+AITY+ +I+  CK                  +N++     ++   C 
Sbjct: 518 LKG------CRPNAITYNILIENFCK------------------INQLEEASGVIVRMCQ 553

Query: 283 ------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
                  ++F  LI G C+   L  A  LFQ L   G      T+NILI      G    
Sbjct: 554 DGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILI------GAYSS 607

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
             + +    +F  + S G  PDLYTY IL++  CK   V   +     ++   F P   T
Sbjct: 608 KLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMAT 667

Query: 397 FTSLIKILEIN 407
           F  ++ +L +N
Sbjct: 668 FGRMLNLLAMN 678



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 162/392 (41%), Gaps = 83/392 (21%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR------- 140
           P   ++N +   L    ++D    ++ R+   G+ PD  T+ + +  FC  GR       
Sbjct: 104 PAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRL 163

Query: 141 -----------------------VSHGFVVLGRIL------RSCFTPDAVTFTSLIKDLC 171
                                   +HG     R L      R  F PD  TF +++  LC
Sbjct: 164 LRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVF-PDVATFNNVLHALC 222

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
            +  +ME+ AL  K+   G   + FT N  I GLC  G    A+ L E M       G  
Sbjct: 223 QKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERM-------GAY 275

Query: 232 CEPDAITYSTIIDGLCKEAG---SANFLG-----------------------FSCMASFS 265
             PD +TY+T++ GLCK++    +A +LG                          +   +
Sbjct: 276 VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEAT 335

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            L K A +   V  +   + +  LI+GLC    ++ A ELF       L P++V YN L+
Sbjct: 336 ELLKDAVFKGFVPDR---VTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLV 392

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           +GLC  G +           +   +   G  PD++TYNI+IN  CK+G +S   V+    
Sbjct: 393 KGLCRQGLILHA------LQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDA 446

Query: 386 LPSCFTPDAVTFTSLI----KILEINSFFRQV 413
           +   + PD  TF +LI    K L+++S  + V
Sbjct: 447 IVKGYLPDVFTFNTLIDGYCKRLKLDSALQLV 478



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 134/306 (43%), Gaps = 29/306 (9%)

Query: 101 AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 160
           A+       +  F+R++L    P    YN +++             V  R+L +   PDA
Sbjct: 82  ARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDA 141

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220
            T T  +K  C   R   A  L   L   GC+     Y T++ GL   GH   A +LF+E
Sbjct: 142 RTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDE 201

Query: 221 MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQ 280
           M       G    PD  T++ ++  LC++           M S + L K      +++  
Sbjct: 202 M------LGRDVFPDVATFNNVLHALCQKG--------DVMESGALLAK------VLKRG 241

Query: 281 CLCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                F C   I GLC+  +L+ A  L + +  A + P+VVTYN L+RGLC D ++ E  
Sbjct: 242 MSANKFTCNIWIRGLCEDGRLEEAVALVERMG-AYVAPDVVTYNTLMRGLCKDSKVQEAA 300

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
            Y        R+ + G  PD +TYN +I+ +CK G +     +    +   F PD VT+ 
Sbjct: 301 QY------LGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYC 354

Query: 399 SLIKIL 404
           SLI  L
Sbjct: 355 SLINGL 360



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +FNIL G  +   +      +F  +   G  PD YTY IL++  CK   V   +  L  +
Sbjct: 597 TFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEM 656

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           +   F P   TF  ++  L    R+ EA A+ 
Sbjct: 657 ISKGFVPSMATFGRMLNLLAMNHRVSEAVAII 688


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 157/331 (47%), Gaps = 25/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            E L   D M N    RP   +FN L   L +  H    L +   +   G  PD +TYN 
Sbjct: 298 EEVLSFIDEMSN-EGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNS 356

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   CK+G V     +L +++   F+P+ VT+ +LI  LC E+++ EA  L   L   G
Sbjct: 357 LIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 416

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV T+N+LI GLC T +  +A+ LFEEM          C PD  TY+ +ID LC   
Sbjct: 417 ILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKG------CHPDEFTYNMLIDSLCSRG 470

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L        S  ++              + +  LIDG CK  +++ A E+F  + 
Sbjct: 471 RLEEALSLLKEMESSGCSRNV------------VTYNTLIDGFCKNKRIEEAEEIFDEME 518

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+  NVVTYN LI GLC + +++E         L  ++   GL PD +TYN L+  FC
Sbjct: 519 LQGISRNVVTYNTLIDGLCKNRRVEEAAQ------LMDQMLMEGLKPDKFTYNSLLTYFC 572

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + G +     I   +  +   PD+VT+ +LI
Sbjct: 573 RAGDIKKAADIVQTMTSNGCEPDSVTYGTLI 603



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 153/318 (48%), Gaps = 24/318 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  +P VT+FNIL   L +       + + + +   GL PD  T+  L+  F + G ++ 
Sbjct: 205 RGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNG 264

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +  +++ +      VT   L+   C E RI E  +   ++   G   D FT+N+L+N
Sbjct: 265 ALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVN 324

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GLCR GH   AL + + M           +PD  TY+++I GLCK       LG     +
Sbjct: 325 GLCRIGHVKHALEILDVMLQEG------FDPDIFTYNSLIFGLCK-------LG-EVEEA 370

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              LN+M     L       + +  LI  LCK ++++ A EL + L   G++P+V T+N 
Sbjct: 371 VEILNQMI----LRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNS 426

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI+GLC       T ++     LF+ + + G  PD +TYN+LI+  C  GR+     +  
Sbjct: 427 LIQGLC------LTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLK 480

Query: 384 RILPSCFTPDAVTFTSLI 401
            +  S  + + VT+ +LI
Sbjct: 481 EMESSGCSRNVVTYNTLI 498



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 142/334 (42%), Gaps = 24/334 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ V D M      +    ++N L   L        V  +  R+   G+ PD  T+NI
Sbjct: 157 DEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNI 216

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   C+  ++    +++  +     +PD  TFT+L++    E  +  A  +  ++   G
Sbjct: 217 LIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAG 276

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C     T N L++G C+ G     L+  +EM+N          PD  T++++++GLC+  
Sbjct: 277 CPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEG------FRPDRFTFNSLVNGLCRIG 330

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              + L    +      +   F +              LI GLCK+ +++ A E+   + 
Sbjct: 331 HVKHALEILDVMLQEGFDPDIFTYN------------SLIFGLCKLGEVEEAVEILNQMI 378

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
                PN VTYN LI  LC + Q++E         L + L S G+ PD+ T+N LI   C
Sbjct: 379 LRDFSPNTVTYNTLISTLCKENQVEEATE------LARVLTSKGILPDVCTFNSLIQGLC 432

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                     +F  +      PD  T+  LI  L
Sbjct: 433 LTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSL 466



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 150/365 (41%), Gaps = 65/365 (17%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN L   L  T ++   + LF+ +   G  PD +TYN+LI+  C  GR+     +
Sbjct: 419 PDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSL 478

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +  S  + + VT+ +LI   C   RI EA  +F ++ + G   +V TYNTLI+GLC+
Sbjct: 479 LKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCK 538

Query: 208 TGHTIVALNLFEEM----------------------------------ANGNGEFGVVCE 233
                 A  L ++M                                     NG     CE
Sbjct: 539 NRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNG-----CE 593

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF----YFPLVRVQCLCLNFLCL 289
           PD++TY T+I GL K AG       S +     L  M      Y P+++           
Sbjct: 594 PDSVTYGTLILGLSK-AGRVELA--SRLLRTVQLKGMVLAPQTYNPVIK----------- 639

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
              L +  +   A  LF+ +   G  P+ VTY ++ RGLC+ G        E V  L + 
Sbjct: 640 --ALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGG----GPIGEAVDFLVE- 692

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409
           +   G  PD  ++ +L    C +    +   +  R++      D+   + ++  L+I  F
Sbjct: 693 MTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVNRVMKQANFSDS-EVSMIMGFLKIRKF 751

Query: 410 FRQVA 414
              +A
Sbjct: 752 QDALA 756



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 134/314 (42%), Gaps = 25/314 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
           +F IL    AK + +D  +++   +    GL  D +TYN L+N      ++    +V  R
Sbjct: 142 TFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSR 201

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           ++     PD  TF  LIK LC   +I  A  +  ++  +G   D  T+ TL+ G    G+
Sbjct: 202 MVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGN 261

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              AL + E+M          C    +T + ++ G CKE      L F    S       
Sbjct: 262 MNGALRIREQMVAAG------CPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPD 315

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
            F F              L++GLC+I  +K A E+   + + G  P++ TYN LI GLC 
Sbjct: 316 RFTFN------------SLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCK 363

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G+++E        +L          P+  TYN LI+  CK  +V     +   +     
Sbjct: 364 LGEVEEAVEILNQMIL------RDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI 417

Query: 391 TPDAVTFTSLIKIL 404
            PD  TF SLI+ L
Sbjct: 418 LPDVCTFNSLIQGL 431



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 133/309 (43%), Gaps = 31/309 (10%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF--T 157
           L K   + ++  + + +  TG    R T+ ILI  + K         V+  I+   F   
Sbjct: 115 LGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVD-IMEEEFGLK 173

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
            DA T+  L+  L   +++     + +++   G + DV T+N LI  LCR      A+ +
Sbjct: 174 LDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILM 233

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
            EEM    G +G+   PD  T++T++ G  +E G+ N               +     +V
Sbjct: 234 MEEM----GSYGL--SPDEKTFTTLMQGFIEE-GNMN-------------GALRIREQMV 273

Query: 278 RVQCLCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
              C   N     L+ G CK  +++        +   G  P+  T+N L+ GLC  G   
Sbjct: 274 AAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIG--- 330

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
              H +    +   +   G  PD++TYN LI   CK+G V     I  +++   F+P+ V
Sbjct: 331 ---HVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTV 387

Query: 396 TFTSLIKIL 404
           T+ +LI  L
Sbjct: 388 TYNTLISTL 396



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 7/181 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  +FD M     SR  VT +N L   L K +  +    L  ++ + GL PD++TYN 
Sbjct: 508 EEAEEIFDEMELQGISRNVVT-YNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNS 566

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+  FC+ G +     ++  +  +   PD+VT+ +LI  L    R+  A+ L   +++ G
Sbjct: 567 LLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKG 626

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             L   TYN +I  L R   T  A+ LF EM            PDA+TY  +  GLC   
Sbjct: 627 MVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGD------PPDAVTYKVVFRGLCSGG 680

Query: 251 G 251
           G
Sbjct: 681 G 681



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 108/284 (38%), Gaps = 64/284 (22%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE----------------------- 192
           F P +V +  +++ L  +        +  +++  GCE                       
Sbjct: 101 FVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAV 160

Query: 193 -------------LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
                        LD FTYN L+N L   G+ +  + +        G      +PD  T+
Sbjct: 161 AVVDIMEEEFGLKLDAFTYNFLLNVLV-DGNKLKLVEIVNSRMVSRG-----IKPDVTTF 214

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKIS 297
           + +I  LC+              +   + +M  Y   P  +       F  L+ G  +  
Sbjct: 215 NILIKALCR--------AHQIRPAILMMEEMGSYGLSPDEKT------FTTLMQGFIEEG 260

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
            +  A  + + +  AG   + VT N+L+ G C +G+++E      V      +++ G  P
Sbjct: 261 NMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEE------VLSFIDEMSNEGFRP 314

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           D +T+N L+N  C+IG V     I   +L   F PD  T+ SLI
Sbjct: 315 DRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLI 358


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 167/344 (48%), Gaps = 37/344 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+  L      +  ++    LF  +   G+ PD  T ++LI+  CK G+V     +
Sbjct: 335 PDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKL 394

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +++    PD VT T+L+K LC + RI +A  LF K++  GC  +V T  TL+ GLC+
Sbjct: 395 LEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQ 454

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
           +G+  +AL L + M +    +G+ C+P+AI+YS IIDGLCK      A  L F  M +  
Sbjct: 455 SGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEAREL-FKEMKALG 513

Query: 266 ALNKMAFYFPLVR----------------------VQCLCLNFLCLIDGLCKISKLKIAR 303
            +  +  Y  L+                       VQ     F  LID LCK  K+  A 
Sbjct: 514 VIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEAN 573

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           EL + + + G +PN VTY  L++GLC + ++ E         LF ++   G  PD+ TY 
Sbjct: 574 ELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQ------LFMKMQKLGCLPDVVTYG 627

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSC------FTPDAVTFTSLI 401
            L+   C+ G + +   +  ++L         F PD ++++ +I
Sbjct: 628 TLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIII 671



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 165/339 (48%), Gaps = 23/339 (6%)

Query: 71  NEALCVFDYMLNMRPS-----RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
           N AL +   MLN         +P + S++I+   L K +  D    LFK +   G+ PD 
Sbjct: 97  NIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDV 156

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            +Y  LI+ FC+ G+      +   +L      D  T + LI  LC E +++EA  L   
Sbjct: 157 ISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEV 216

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +   GC LD+ TY+TLI GLC       A  LF  M        + C PDAI Y T++ G
Sbjct: 217 MIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQK------LGCRPDAIAYGTLMKG 270

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           LC + G+ N    +       LN    Y   ++ +   +++  +IDGLCK  +   AREL
Sbjct: 271 LC-QTGNIN---TALQLHQEMLNDTGRYG--IKCKPTLISYSIIIDGLCKDRREDEAREL 324

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F+ +   G+MP+V++Y  LI G C  G+ ++ K       LF  +   G+ PD+ T ++L
Sbjct: 325 FKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAK------CLFNEMLDVGIQPDVTTSSVL 378

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           I+  CK G+V     +   ++     PD VT T+L+K L
Sbjct: 379 IDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGL 417



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 140/292 (47%), Gaps = 53/292 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+  L     ++  +     LF  +   G+ PD  T+++LI+  CK G+V     +
Sbjct: 516 PDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANEL 575

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +++    P+ VT+T+L+K LC   RI EA  LF K++  GC  DV TY TL+ GLC+
Sbjct: 576 LEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQ 635

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           TG+   AL L ++M +  G++G   +PD I+YS IIDGLCK                   
Sbjct: 636 TGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDE------------- 682

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                             ARELF+ +   G++PNV++Y  LI G
Sbjct: 683 ----------------------------------ARELFKEMKALGVIPNVISYTSLIHG 708

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            C  G++++ KH      LF  +   G+  +  TY+++I+ FCK G++    
Sbjct: 709 FCRSGKLEDAKH------LFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKAL 754



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 168/343 (48%), Gaps = 23/343 (6%)

Query: 71  NEALCVFDYMLNMR-----PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
           N AL +   MLN         +P + S++I+   L K +  D    LFK +   G+ PD 
Sbjct: 278 NTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDV 337

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            +Y  LI+ FC  G+      +   +L     PD  T + LI  LC + +++EA  L   
Sbjct: 338 ISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEV 397

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +   GC  DV T  TL+ GLC       A  LF +M        + C P+ +T +T++ G
Sbjct: 398 VIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQK------LGCMPNVVTCATLMKG 451

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           LC+   S N +  +     + L+  + Y   +  +   +++  +IDGLCK  +   AREL
Sbjct: 452 LCQ---SGN-IKIALELHKNMLSDTSPYG--INCKPNAISYSIIIDGLCKCGREDEAREL 505

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F+ +   G++P+V++Y  LI G C  G+  + K+      LF  +   G+ PD+ T+++L
Sbjct: 506 FKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKY------LFNEMVDIGVQPDVTTFSVL 559

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
           I+  CK G+V     +   ++     P+ VT+T+L+K L +N 
Sbjct: 560 IDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMND 602



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 150/288 (52%), Gaps = 24/288 (8%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G+ PD  T  +LI+ FCK G+V     +L  +++     D VT+++LIK LC + RI EA
Sbjct: 5   GIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEA 64

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             LF  ++  GC  D   Y TL+ GLC+TG   +AL+L +EM N   ++G+ C+P  ++Y
Sbjct: 65  TQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSY 124

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKI 296
           S IIDGLCK+                  ++    F  ++ Q +    +++  LI G C+ 
Sbjct: 125 SIIIDGLCKDRRE---------------DEARELFKEMKAQGMMPDVISYTSLIHGFCRS 169

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            K + A+ LF  +   G+  +V T ++LI  LC +G++ E    E + ++ +R    G  
Sbjct: 170 GKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEAN--ELLEVMIQR----GCI 223

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            D+ TY+ LI   C   R+S    +F  +      PDA+ + +L+K L
Sbjct: 224 LDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGL 271



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 136/287 (47%), Gaps = 34/287 (11%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+  +Y+I+I+  CK GR      +   +      PD +++TSLI   C   +  +A  L
Sbjct: 481 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 540

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F ++   G + DV T++ LI+ LC+ G  I A  L E M          C P+ +TY+T+
Sbjct: 541 FNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRG------CIPNTVTYTTL 594

Query: 243 IDGLC--KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           + GLC       A  L F  M     L  +  Y  L++             GLC+   +K
Sbjct: 595 VKGLCMNDRISEATQL-FMKMQKLGCLPDVVTYGTLMK-------------GLCQTGNIK 640

Query: 301 IARELFQSLPR------AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
            A EL + +            P+V++Y+I+I GLC  G+ DE +       LFK + + G
Sbjct: 641 TALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARE------LFKEMKALG 694

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + P++ +Y  LI+ FC+ G++     +F  ++      +AVT++ +I
Sbjct: 695 VIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMI 741



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 157/405 (38%), Gaps = 91/405 (22%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P VT+  +L     K         L + +   G   D  TY+ LI   C   R+S    
Sbjct: 7   QPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQ 66

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIM----------------------------- 177
           +   + +    PDA+ + +L+K LC   +I                              
Sbjct: 67  LFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSI 126

Query: 178 ------------EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
                       EA  LF +++  G   DV +Y +LI+G CR+G    A  LF EM +  
Sbjct: 127 IIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLD-- 184

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAG--SANFLGFSCMASFSALNKMAFYFPLVRVQCL- 282
               V    D  T S +ID LCKE     AN L    M     +  +  Y  L++  C+ 
Sbjct: 185 ----VGIRSDVTTSSMLIDILCKEGKVIEANEL-LEVMIQRGCILDIVTYSTLIKGLCMK 239

Query: 283 ---------------------CLNFLCLIDGLCKISKLKIARELFQSL----PRAGL--M 315
                                 + +  L+ GLC+   +  A +L Q +     R G+   
Sbjct: 240 HRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCK 299

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P +++Y+I+I GLC D + DE +       LFK + + G+ PD+ +Y  LI+ FC  G+ 
Sbjct: 300 PTLISYSIIIDGLCKDRREDEARE------LFKEMKAQGIMPDVISYTTLIHGFCLSGKW 353

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
                +F  +L     PD  T + LI       K++E N     V
Sbjct: 354 EKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVV 398



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 8/140 (5%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKR-LNLTGLF-----PDRYTYNILINCFCKMGRV 141
           P V ++  L   L +T +  T L L K+ L+ TG +     PD  +Y+I+I+  CK GR 
Sbjct: 621 PDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGRE 680

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                +   +      P+ +++TSLI   C   ++ +A  LF ++   G +L+  TY+ +
Sbjct: 681 DEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVM 740

Query: 202 INGLCRTGHTIVALNLFEEM 221
           I+G C+ G    A  LF++M
Sbjct: 741 IHGFCKEGQIDKA--LFQKM 758



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V S++I+   L K    D    LFK +   G+ P+  +Y  LI+ FC+ G++     
Sbjct: 661 KPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKH 720

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           +   ++      +AVT++ +I   C E +I    ALF K+ 
Sbjct: 721 LFNEMVDQGVQLNAVTYSVMIHGFCKEGQI--DKALFQKME 759


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 157/314 (50%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L   L K       +   +R+   G  PD +TYN +I+ +CK+  V     +
Sbjct: 253 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 312

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L   +   F PD VT+ SLI  LCAE  +  A  LF + +  G + D+  YN+L+ GLC 
Sbjct: 313 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 372

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  + AL +  EMA    E G  C PD  TY+ +I+GLCK    ++    + +    A+
Sbjct: 373 QGLILHALQVMNEMA----EEG--CHPDIQTYNIVINGLCKMGNISD----ATVVMNDAI 422

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             M  Y P V        F  LIDG CK  KL  A +L + +   G+ P+ +TYN ++ G
Sbjct: 423 --MKGYLPDV------FTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNG 474

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G+++E    ET    F+ +   G  P+  TYNILI  FC+  ++     +  ++  
Sbjct: 475 LCKAGKVNEVN--ET----FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQ 528

Query: 388 SCFTPDAVTFTSLI 401
               PDAV+F +LI
Sbjct: 529 EGLHPDAVSFNTLI 542



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 160/338 (47%), Gaps = 30/338 (8%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           +L   P R  V    ++ G  A    +D    LF ++  T +FP+   +N +++  CK G
Sbjct: 142 LLRALPHRGAVAYCTVVCGLYAHGHTHDA-RQLFDQMLHTHVFPNLAAFNKVLHALCKRG 200

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V    ++LG++++   + +  T+   I+ LC   R+ EA  L   +R +    DV TYN
Sbjct: 201 DVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVP-DVVTYN 259

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TLI GLC+      A++    M N        C PD  TY+TIIDG CK          S
Sbjct: 260 TLIRGLCKKSMPQEAMHYLRRMMNQG------CLPDDFTYNTIIDGYCK---------IS 304

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            +   + L K A +   V  Q   + +  LI+GLC    ++ A ELF      G+ P++V
Sbjct: 305 MVQEATELLKDAVFKGFVPDQ---VTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV 361

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            YN L++GLC  G +           +   +   G  PD+ TYNI+IN  CK+G +S   
Sbjct: 362 VYNSLVKGLCLQGLILH------ALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 415

Query: 380 VIFGRILPSCFTPDAVTFTSLI----KILEINSFFRQV 413
           V+    +   + PD  TF +LI    K L+++S  + V
Sbjct: 416 VVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLV 453



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 161/350 (46%), Gaps = 33/350 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD ML+     P + +FN +   L K         L  ++   G+  + +TYNI
Sbjct: 168 HDARQLFDQMLHTH-VFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 226

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I   C+ GR+    V L   +R+   PD VT+ +LI+ LC +S   EA     ++   G
Sbjct: 227 WIRGLCEAGRLPEA-VRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG 285

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  D FTYNT+I+G C+      A  L ++        G V  PD +TY ++I+GLC E 
Sbjct: 286 CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK----GFV--PDQVTYCSLINGLCAEG 339

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L     A    +       P + V      +  L+ GLC    +  A ++   + 
Sbjct: 340 DVERALELFNEAQAKGIK------PDIVV------YNSLVKGLCLQGLILHALQVMNEMA 387

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P++ TYNI+I GLC  G + +        ++       G  PD++T+N LI+ +C
Sbjct: 388 EEGCHPDIQTYNIVINGLCKMGNISDAT------VVMNDAIMKGYLPDVFTFNTLIDGYC 441

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           K  ++ S   +  R+      PD +T+ S++       K+ E+N  F+++
Sbjct: 442 KRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 491



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 160/395 (40%), Gaps = 68/395 (17%)

Query: 42  TVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA 101
            V D  +    ++  CK S         P EA+     M+N +   P   ++N +     
Sbjct: 251 AVPDVVTYNTLIRGLCKKS--------MPQEAMHYLRRMMN-QGCLPDDFTYNTIIDGYC 301

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K         L K     G  PD+ TY  LIN  C  G V     +          PD V
Sbjct: 302 KISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV 361

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH----TIV---- 213
            + SL+K LC +  I+ A  +  ++   GC  D+ TYN +INGLC+ G+    T+V    
Sbjct: 362 VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDA 421

Query: 214 ---------------------------ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
                                      AL L E M     E+G+   PD ITY+++++GL
Sbjct: 422 IMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM----WEYGIA--PDTITYNSVLNGL 475

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
           CK AG  N            +N+      L       + +  LI+  C+ +K++ A ++ 
Sbjct: 476 CK-AGKVN-----------EVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVI 523

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             + + GL P+ V++N LI G C +G +      E  +LLF++L   G      T+N LI
Sbjct: 524 VKMSQEGLHPDAVSFNTLIYGFCRNGDL------EGAYLLFQKLEEKGYSATADTFNTLI 577

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             F     +     IF  +L      D+ T+  LI
Sbjct: 578 GAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLI 612



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 118/296 (39%), Gaps = 40/296 (13%)

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  + + GR+        R+      P A  + +++  L   +   +A  ++ ++   G 
Sbjct: 57  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 116

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ T+   +   C T    +AL L   + +            A+ Y T++ GL     
Sbjct: 117 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----------AVAYCTVVCGLYAHGH 166

Query: 252 SAN-------FLGFSCMASFSALNKM-------------AFYFPLVRVQCLCLNFLC--- 288
           + +        L      + +A NK+                   V  + + +N      
Sbjct: 167 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 226

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
            I GLC+  +L  A  L   + RA  +P+VVTYN LIRGLC      E  HY       +
Sbjct: 227 WIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHY------LR 279

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           R+ + G  PD +TYN +I+ +CKI  V     +    +   F PD VT+ SLI  L
Sbjct: 280 RMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGL 335



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N +   L K    + V   F+ + L G  P+  TYNILI  FC+  ++     V
Sbjct: 463 PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKV 522

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + ++ +    PDAV+F +LI   C    +  A  LF KL   G      T+NTLI     
Sbjct: 523 IVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSG 582

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             +  +A  +F+EM + G+         D+ TY  +IDG CK A
Sbjct: 583 KLNMHMAEKIFDEMLSKGH-------RADSYTYRVLIDGSCKTA 619



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 2/155 (1%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NE    F  M+ ++   P   ++NIL     ++   +    +  +++  GL PD  ++N 
Sbjct: 482 NEVNETFQEMI-LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNT 540

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  FC+ G +   +++  ++    ++  A TF +LI     +  +  A  +F ++   G
Sbjct: 541 LIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKG 600

Query: 191 CELDVFTYNTLINGLCRTGHTIVA-LNLFEEMANG 224
              D +TY  LI+G C+T +   A ++L E +  G
Sbjct: 601 HRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG 635



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +FN L G  +   +      +F  +   G   D YTY +LI+  CK   V   ++ L  +
Sbjct: 572 TFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEM 631

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           ++  F P   TF  +I  L    R+ +A  +   +   G   +V   +T++N 
Sbjct: 632 IKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV--DTILNA 682


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 157/314 (50%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L   L K       +   +R+   G  PD +TYN +I+ +CK+  V     +
Sbjct: 254 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 313

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L   +   F PD VT+ SLI  LCAE  +  A  LF + +  G + D+  YN+L+ GLC 
Sbjct: 314 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 373

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  + AL +  EMA    E G  C PD  TY+ +I+GLCK    ++    + +    A+
Sbjct: 374 QGLILHALQVMNEMA----EEG--CHPDIQTYNIVINGLCKMGNISD----ATVVMNDAI 423

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             M  Y P V        F  LIDG CK  KL  A +L + +   G+ P+ +TYN ++ G
Sbjct: 424 --MKGYLPDV------FTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNG 475

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G+++E    ET    F+ +   G  P+  TYNILI  FC+  ++     +  ++  
Sbjct: 476 LCKAGKVNEVN--ET----FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQ 529

Query: 388 SCFTPDAVTFTSLI 401
               PDAV+F +LI
Sbjct: 530 EGLHPDAVSFNTLI 543



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 160/338 (47%), Gaps = 30/338 (8%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           +L   P R  V    ++ G  A    +D    LF ++  T +FP+   +N +++  CK G
Sbjct: 143 LLRALPHRGAVAYCTVVCGLYAHGHTHDA-RQLFDQMLHTHVFPNLAAFNKVLHALCKRG 201

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V    ++LG++++   + +  T+   I+ LC   R+ EA  L   +R +    DV TYN
Sbjct: 202 DVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVP-DVVTYN 260

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TLI GLC+      A++    M N        C PD  TY+TIIDG CK          S
Sbjct: 261 TLIRGLCKKSMPQEAMHYLRRMMNQG------CLPDDFTYNTIIDGYCK---------IS 305

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            +   + L K A +   V  Q   + +  LI+GLC    ++ A ELF      G+ P++V
Sbjct: 306 MVQEATELLKDAVFKGFVPDQ---VTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV 362

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            YN L++GLC  G +           +   +   G  PD+ TYNI+IN  CK+G +S   
Sbjct: 363 VYNSLVKGLCLQGLILH------ALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 416

Query: 380 VIFGRILPSCFTPDAVTFTSLI----KILEINSFFRQV 413
           V+    +   + PD  TF +LI    K L+++S  + V
Sbjct: 417 VVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLV 454



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 161/350 (46%), Gaps = 33/350 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD ML+     P + +FN +   L K         L  ++   G+  + +TYNI
Sbjct: 169 HDARQLFDQMLHTH-VFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 227

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I   C+ GR+    V L   +R+   PD VT+ +LI+ LC +S   EA     ++   G
Sbjct: 228 WIRGLCEAGRLPEA-VRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG 286

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  D FTYNT+I+G C+      A  L ++        G V  PD +TY ++I+GLC E 
Sbjct: 287 CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK----GFV--PDQVTYCSLINGLCAEG 340

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L     A    +       P + V      +  L+ GLC    +  A ++   + 
Sbjct: 341 DVERALELFNEAQAKGIK------PDIVV------YNSLVKGLCLQGLILHALQVMNEMA 388

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P++ TYNI+I GLC  G + +        ++       G  PD++T+N LI+ +C
Sbjct: 389 EEGCHPDIQTYNIVINGLCKMGNISDAT------VVMNDAIMKGYLPDVFTFNTLIDGYC 442

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           K  ++ S   +  R+      PD +T+ S++       K+ E+N  F+++
Sbjct: 443 KRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 492



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 160/395 (40%), Gaps = 68/395 (17%)

Query: 42  TVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA 101
            V D  +    ++  CK S         P EA+     M+N +   P   ++N +     
Sbjct: 252 AVPDVVTYNTLIRGLCKKS--------MPQEAMHYLRRMMN-QGCLPDDFTYNTIIDGYC 302

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K         L K     G  PD+ TY  LIN  C  G V     +          PD V
Sbjct: 303 KISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV 362

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH----TIV---- 213
            + SL+K LC +  I+ A  +  ++   GC  D+ TYN +INGLC+ G+    T+V    
Sbjct: 363 VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDA 422

Query: 214 ---------------------------ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
                                      AL L E M     E+G+   PD ITY+++++GL
Sbjct: 423 IMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM----WEYGIA--PDTITYNSVLNGL 476

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
           CK AG  N            +N+      L       + +  LI+  C+ +K++ A ++ 
Sbjct: 477 CK-AGKVN-----------EVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVI 524

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             + + GL P+ V++N LI G C +G +      E  +LLF++L   G      T+N LI
Sbjct: 525 VKMSQEGLHPDAVSFNTLIYGFCRNGDL------EGAYLLFQKLEEKGYSATADTFNTLI 578

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             F     +     IF  +L      D+ T+  LI
Sbjct: 579 GAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLI 613



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 118/296 (39%), Gaps = 40/296 (13%)

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  + + GR+        R+      P A  + +++  L   +   +A  ++ ++   G 
Sbjct: 58  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 117

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ T+   +   C T    +AL L   + +            A+ Y T++ GL     
Sbjct: 118 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----------AVAYCTVVCGLYAHGH 167

Query: 252 SAN-------FLGFSCMASFSALNKM-------------AFYFPLVRVQCLCLNFLC--- 288
           + +        L      + +A NK+                   V  + + +N      
Sbjct: 168 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 227

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
            I GLC+  +L  A  L   + RA  +P+VVTYN LIRGLC      E  HY       +
Sbjct: 228 WIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHY------LR 280

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           R+ + G  PD +TYN +I+ +CKI  V     +    +   F PD VT+ SLI  L
Sbjct: 281 RMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGL 336



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N +   L K    + V   F+ + L G  P+  TYNILI  FC+  ++     V
Sbjct: 464 PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKV 523

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + ++ +    PDAV+F +LI   C    +  A  LF KL   G      T+NTLI     
Sbjct: 524 IVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSG 583

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             +  +A  +F+EM + G+         D+ TY  +IDG CK A
Sbjct: 584 KLNMHMAEKIFDEMLSKGH-------RADSYTYRVLIDGSCKTA 620



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 2/155 (1%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NE    F  M+ ++   P   ++NIL     ++   +    +  +++  GL PD  ++N 
Sbjct: 483 NEVNETFQEMI-LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNT 541

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  FC+ G +   +++  ++    ++  A TF +LI     +  +  A  +F ++   G
Sbjct: 542 LIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKG 601

Query: 191 CELDVFTYNTLINGLCRTGHTIVA-LNLFEEMANG 224
              D +TY  LI+G C+T +   A ++L E +  G
Sbjct: 602 HRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG 636



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +FN L G  +   +      +F  +   G   D YTY +LI+  CK   V   ++ L  +
Sbjct: 573 TFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEM 632

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           ++  F P   TF  +I  L    R+ +A  +   +   G   +V   +T++N 
Sbjct: 633 IKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV--DTILNA 683


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/357 (30%), Positives = 172/357 (48%), Gaps = 63/357 (17%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +F  +L   P+ PP   FN + G L K+KHY TVLSL +++   G+ P  + +   
Sbjct: 59  DAFSLFSRLLRQNPT-PPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHF--- 114

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
                      H   ++G      + P+ +TFT+LIK LC + +I +A      +   G 
Sbjct: 115 ----------QHPHQLMG------YHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGF 158

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           +LD   Y TLI+GLC+ G T  AL+L   + +GN     + +P+ + YSTIIDG+CK+  
Sbjct: 159 QLDQVGYGTLIHGLCKVGETRAALDLLRRV-DGN-----LVQPNVVMYSTIIDGMCKDKH 212

Query: 252 ----------------SANFLGFSCMAS-----------FSALNKMAFYFPLVRVQCLCL 284
                           S N + +S + S               NKM     L  ++    
Sbjct: 213 VNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMI----LENIKPDVY 268

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            F  L+DG CK  K+K  + +F  + + G+ PNVVTY  L+ G C   ++++ K      
Sbjct: 269 TFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKS----- 323

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   ++  G+ PD+ +YNILI+ FCKI +V     +F  +      PD VT+ SLI
Sbjct: 324 -ILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLI 379



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 163/340 (47%), Gaps = 37/340 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  ++  M++   S P V +++ L             + LF ++ L  + PD YT+NI
Sbjct: 214 NDAFDLYSEMVSKGIS-PNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNI 272

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ FCK G++  G  V   +++    P+ VT+ SL+   C    + +A ++   +   G
Sbjct: 273 LVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRG 332

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ +YN LI+G C+      A+NLF+EM + +        PD +TY+++IDGLCK  
Sbjct: 333 VNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKH------IIPDVVTYNSLIDGLCK-- 384

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARE 304
                           L K+++   LV       V    + +  ++D LCK  ++  A  
Sbjct: 385 ----------------LGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIA 428

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L   L   G+ PN+ TY ILI GLC  G++++  +      +F+ L   G    + TY +
Sbjct: 429 LLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHN------IFEDLLVKGYNITVNTYTV 482

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +I+ FC  G       +  ++  +   PDAVT+  +I+ L
Sbjct: 483 MIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSL 522



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 161/362 (44%), Gaps = 52/362 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL   D ++ M      V  +  L   L K       L L +R++   + P+   Y+ 
Sbjct: 144 HQALLFHDNVVAMGFQLDQV-GYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYST 202

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK   V+  F +   ++    +P+ VT+++LI       ++ +A  LF K+ +  
Sbjct: 203 IIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILEN 262

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--K 248
            + DV+T+N L++G C+ G       +F  M           +P+ +TY +++DG C  K
Sbjct: 263 IKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQG------IKPNVVTYCSLMDGYCLVK 316

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           E   A  + ++   S   +N      P ++      ++  LIDG CKI K+  A  LF+ 
Sbjct: 317 EVNKAKSILYT--MSQRGVN------PDIQ------SYNILIDGFCKIKKVDEAMNLFKE 362

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQM-------DE----------------------TKH 339
           +    ++P+VVTYN LI GLC  G++       DE                         
Sbjct: 363 MHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQ 422

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
            +    L  +L   G+ P++YTY ILI+  CK GR+     IF  +L   +     T+T 
Sbjct: 423 VDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTV 482

Query: 400 LI 401
           +I
Sbjct: 483 MI 484



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 1/152 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL + D M + R   P + +++ +   L K    D  ++L  +L   G+ P+ YTY ILI
Sbjct: 391 ALKLVDEMHD-RGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILI 449

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK GR+     +   +L   +     T+T +I   C +    EA AL +K++   C 
Sbjct: 450 DGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCI 509

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
            D  TY  +I  L        A  L E +  G
Sbjct: 510 PDAVTYEIIIRSLFDKDENDKAEKLREMITRG 541


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 159/321 (49%), Gaps = 23/321 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  RP V +++ L   L+K    D  L L  ++   G   +  TY+ +++   K+GR+  
Sbjct: 537 RGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMED 596

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
             VVL ++  +   PDAVT+ +LI       R+ EA  L  ++   G    V TY TL +
Sbjct: 597 AVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCH 656

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GLCR+G    A+ + + MA         C P+AITYS+I+DGLCK       LG+     
Sbjct: 657 GLCRSGRFDEAVEILDYMAARG------CAPNAITYSSIVDGLCKAGRVTEALGY----- 705

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F  + +     P V      + +  LIDGLCK  ++  A E  + + RAG +P+VVT++I
Sbjct: 706 FEKMARDEVVAPHV------IAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSI 759

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GLC+ G++D      T   LF  +   G   D+Y YN +IN +C  G  S+ + +  
Sbjct: 760 LINGLCDAGRID------TGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLE 813

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +       + VT   +IK L
Sbjct: 814 EMKTHGIAKNTVTHGIVIKAL 834



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 168/356 (47%), Gaps = 33/356 (9%)

Query: 50  EQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTV 109
           EQ L+   +SS    I S  P       D+++ ++  RP + ++N L   L+K+      
Sbjct: 441 EQMLEREWRSSSSWPIHS--PE-----VDFLM-VQVCRPTLVTYNTLVTGLSKSGMVRDA 492

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           L L + +  +GL PD  T+N +++  CK  R+     V  R L     P+ VT+++LI  
Sbjct: 493 LGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDG 552

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
           L   +++ EA  L  K+   GC  +  TY+T+++GL + G    A+ +  +M +      
Sbjct: 553 LSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAG---- 608

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCL 289
             C PDA+TY+T+IDG  K       +G         + +  F+  +V    LC      
Sbjct: 609 --CLPDAVTYNTLIDGFFKRQRLREAVGL-----LREMLEAGFHPSVVTYTTLC------ 655

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
             GLC+  +   A E+   +   G  PN +TY+ ++ GLC  G++ E   Y      F++
Sbjct: 656 -HGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGY------FEK 708

Query: 350 LNSTGLF-PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +    +  P +  Y+ LI+  CK GR+   +    R++ +   PD VTF+ LI  L
Sbjct: 709 MARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGL 764



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 160/351 (45%), Gaps = 42/351 (11%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           +L   P  P V  FN L   L + +  D    LF  +  +G   D  TYNIL+   CK+ 
Sbjct: 300 LLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLR 359

Query: 140 RVSHGF--VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVFGCELDVF 196
           R+   +  V L R    C +P+ VTF++LI+ LC   R+ +A  ++ ++  V G   + F
Sbjct: 360 RIPEAYRHVELMRRTEGC-SPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRF 418

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV---------------VCEPDAITYST 241
           TY  L+ GLC+ G +      FE+M                        VC P  +TY+T
Sbjct: 419 TYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNT 478

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           ++ GL K     + LG       S L+      P V      + F  ++DGLCK  ++  
Sbjct: 479 LVTGLSKSGMVRDALGLLEFMIESGLS------PDV------ITFNSVLDGLCKEQRILD 526

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  +F+     G  PNVVTY+ LI GL    +MDE         L  ++   G   +  T
Sbjct: 527 AHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEA------LQLLAKMVELGCRANTVT 580

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           Y+ +++   K+GR+    V+  ++  +   PDAVT+ +L     I+ FF++
Sbjct: 581 YSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTL-----IDGFFKR 626



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 152/336 (45%), Gaps = 30/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +   M+ +      VT   ++ G L   +  D V+ L +++   G  PD  TYN 
Sbjct: 560 DEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVL-RQMRDAGCLPDAVTYNT 618

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F K  R+     +L  +L + F P  VT+T+L   LC   R  EA  +   +   G
Sbjct: 619 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 678

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +  TY+++++GLC+ G    AL  FE+MA        V  P  I YS +IDGLCK A
Sbjct: 679 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDE-----VVAPHVIAYSALIDGLCK-A 732

Query: 251 GSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           G  +        ++  L +M  A   P V      + F  LI+GLC   ++    ELF  
Sbjct: 733 GRID-------EAYEFLERMIRAGRIPDV------VTFSILINGLCDAGRIDTGLELFCG 779

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G   ++  YN +I   C  G+      +   + L + + + G+  +  T+ I+I  
Sbjct: 780 MAERGCKADIYAYNAMINAYCLKGE------FSAAYALLEEMKTHGIAKNTVTHGIVIKA 833

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            C   R+      F  I   C   D +++ +LI  L
Sbjct: 834 LCGNDRIDEAVSYFHSIPEDC--RDEISYNTLITSL 867



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 153/354 (43%), Gaps = 60/354 (16%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P   ++N L   L          SL +R+   G  P+  T+ ++I   CK G +  
Sbjct: 65  RGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEA 124

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
            F V+  ++   F PD    T L+  LC   R+ EA   F ++ + G   D  TYNT+++
Sbjct: 125 AFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVD 184

Query: 204 GLCRTGHT----------------------IVALNLFEEMANGNGEF---------GVVC 232
           GL + G                         +A++   +  N  G +         GV  
Sbjct: 185 GLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGV-- 242

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
            P+ +TY  +IDGLCK       LG          N  A  F           F  L+ G
Sbjct: 243 SPNTVTYDALIDGLCKAGKLDIALGL-----LRDKNSQAGMFA----------FSSLLHG 287

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LC+  +L+ A +L +++P    +PNVV +N L+ GLC   ++DE       F LF  +  
Sbjct: 288 LCQAHRLEEAIQLLKAMP---CVPNVVCFNSLMNGLCQARRVDEA------FELFDVMKE 338

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGF--VIFGRILPSCFTPDAVTFTSLIKIL 404
           +G   D+ TYNIL+   CK+ R+   +  V   R    C +P+ VTF++LI+ L
Sbjct: 339 SGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGC-SPNVVTFSTLIQGL 391



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 137/280 (48%), Gaps = 28/280 (10%)

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           TYN+LIN  CK GRV   F    + ++  F P  VT++++I  LC ++ + +   L  ++
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              GC  +  TYNTL+N L   G    A +L E MA  NG     C P+ IT+  II GL
Sbjct: 63  AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMA-ANG-----CPPELITFGLIIKGL 116

Query: 247 CKEAGSANFLGFSCMASFSALNKMA--FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           CKE            A+F  +++M    + P V +  +      L+  LC++ ++  A  
Sbjct: 117 CKEG--------EIEAAFRVVDEMVDRGFVPDVEIHTV------LLHALCELGRVDEAWF 162

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
            FQ +   G  P+ VTYN ++ GL   G++      E   ++ + L  +   P ++T+ I
Sbjct: 163 FFQQVLLIGFTPDAVTYNTMVDGLYKAGRL------EAAGMVLQLLAESFSSPTVFTFTI 216

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            ++   K G ++  +  F  +  +  +P+ VT+ +LI  L
Sbjct: 217 AVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGL 256



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 148/341 (43%), Gaps = 41/341 (12%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V +++ +   L +    D    L + +   G  P+  TYN L+N     GR    F 
Sbjct: 33  RPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFS 92

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L R+  +   P+ +TF  +IK LC E  I  A  +  ++   G   DV  +  L++ LC
Sbjct: 93  LLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALC 152

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A   F+++        +   PDA+TY+T++DGL K AG     G         
Sbjct: 153 ELGRVDEAWFFFQQV------LLIGFTPDAVTYNTMVDGLYK-AGRLEAAGMVLQ----- 200

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L   +F  P V        F   +DGL K   L  A E F S+P+ G+ PN VTY+ LI 
Sbjct: 201 LLAESFSSPTV------FTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALID 254

Query: 327 GLCNDGQMD------ETKHYETVFLLF-----------------KRLNSTGLFPDLYTYN 363
           GLC  G++D        K+ +     F                 + L +    P++  +N
Sbjct: 255 GLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFN 314

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L+N  C+  RV   F +F  +  S  + D +T+  L+K L
Sbjct: 315 SLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGL 355



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 155/350 (44%), Gaps = 26/350 (7%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF-PDRYTYN 129
            +EA+ + DYM   R   P   +++ +   L K       L  F+++    +  P    Y+
Sbjct: 665  DEAVEILDYM-AARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYS 723

Query: 130  ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
             LI+  CK GR+   +  L R++R+   PD VTF+ LI  LC   RI     LF  +   
Sbjct: 724  ALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAER 783

Query: 190  GCELDVFTYNTLINGLCRTGHTIVALNLFEEM-----ANGNGEFGVVCEP--------DA 236
            GC+ D++ YN +IN  C  G    A  L EEM     A      G+V +         +A
Sbjct: 784  GCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEA 843

Query: 237  ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLC 294
            ++Y   I   C++  S N L  S +AS  +   +     +V         N++ ++DGL 
Sbjct: 844  VSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLF 903

Query: 295  KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
            K    ++A +L Q +   G  P++ TY I+I GL    Q+     Y      F+ +    
Sbjct: 904  KAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDY------FEEMLRKN 957

Query: 355  LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L PD   Y+ LI+ FCK  +V   + +   +  S   P    +++++  L
Sbjct: 958  LKPDAIVYSSLIDAFCKADKVDDAWKL---LRSSGIEPTITMYSTMVDSL 1004



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 29/186 (15%)

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNK-MAFYF-PLVRVQCLCLNFLCLIDGLC 294
           +TY+ +I+GLCK        G  C A F+A  K + F F P V      + +  +IDGLC
Sbjct: 2   VTYNVLINGLCKA-------GRVCDA-FTAFRKAIQFGFRPTV------VTYSTVIDGLC 47

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           + +++    +L + +   G  PN VTYN L+  L   G+  E       F L +R+ + G
Sbjct: 48  RDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEA------FSLLERMAANG 101

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL-------EIN 407
             P+L T+ ++I   CK G + + F +   ++   F PD    T L+  L       E  
Sbjct: 102 CPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAW 161

Query: 408 SFFRQV 413
            FF+QV
Sbjct: 162 FFFQQV 167



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 89/217 (41%), Gaps = 27/217 (12%)

Query: 124  DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
            D  +YN LI       R      +L  ++    +PDA  + +++  L        AA L 
Sbjct: 856  DEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLL 915

Query: 184  TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
             ++R  G   D+ TY  +I+GL +     +A + FEEM   N       +PDAI YS++I
Sbjct: 916  QEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKN------LKPDAIVYSSLI 969

Query: 244  DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR---VQCLCLNFLCLIDGLCKISKLK 300
            D  CK                   +K+   + L+R   ++     +  ++D LCK     
Sbjct: 970  DAFCKA------------------DKVDDAWKLLRSSGIEPTITMYSTMVDSLCKNRGTD 1011

Query: 301  IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
             A E+ + +      P +  +  L      +G++DE 
Sbjct: 1012 KALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEA 1048



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 3/143 (2%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P   ++  +   L K    +    L + +   G  PD  TY I+I+   K  ++      
Sbjct: 890  PDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDY 949

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
               +LR    PDA+ ++SLI   C   ++ +A  L   LR  G E  +  Y+T+++ LC+
Sbjct: 950  FEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKL---LRSSGIEPTITMYSTMVDSLCK 1006

Query: 208  TGHTIVALNLFEEMANGNGEFGV 230
               T  AL +  EM + N E G+
Sbjct: 1007 NRGTDKALEVIREMKSKNCEPGI 1029



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 9/165 (5%)

Query: 92   SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
            S+N L   L  ++  +  L L + +   G  PD   Y  +++   K G       +L  +
Sbjct: 859  SYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEM 918

Query: 152  LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 +PD  T+T +I  L    ++  A   F ++     + D   Y++LI+  C+    
Sbjct: 919  RSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKV 978

Query: 212  IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
              A  L               EP    YST++D LCK  G+   L
Sbjct: 979  DDAWKLLRSSG---------IEPTITMYSTMVDSLCKNRGTDKAL 1014



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 83/206 (40%), Gaps = 18/206 (8%)

Query: 28   NEPSYPTTTATLRLTVKDRASLEQFLKERCKSSG-----------EGDITSITPNEALCV 76
            +E SY T   +L  + +   +LE  L+      G           +G   + +P  A  +
Sbjct: 856  DEISYNTLITSLVASRRSEQALE-LLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKL 914

Query: 77   FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
               M + R   P + ++ I+   L+K K        F+ +    L PD   Y+ LI+ FC
Sbjct: 915  LQEMRS-RGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFC 973

Query: 137  KMGRVSHGFVVLGRILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            K  +V   +    ++LRS    P    +++++  LC      +A  +  +++   CE  +
Sbjct: 974  KADKVDDAW----KLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGI 1029

Query: 196  FTYNTLINGLCRTGHTIVALNLFEEM 221
              + +L       G    A+ L  ++
Sbjct: 1030 HIWTSLATAYVAEGRVDEAVKLVNDL 1055



 Score = 41.6 bits (96), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + TYN+LIN  CK GRV   F  F + +   F P  VT++++I  L
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGL 46


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 114/364 (31%), Positives = 180/364 (49%), Gaps = 29/364 (7%)

Query: 41  LTVKDRASLEQFLKERCK-SSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGC 99
           L  K R     F  E  K  SG  +I  +   +A+ +F  M+  RP  P V  F  L G 
Sbjct: 31  LAKKSRDGESGFGGESLKLRSGFHEIKGL--EDAIDLFGDMVRSRP-LPSVIDFCKLMGV 87

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           + +    D V+SL +++ +  +  + Y++ IL+ CFC   ++       G+I +  F P 
Sbjct: 88  VVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPT 147

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            VTF++L+  LC E RI EA  LF ++    C+ +V T+ TL+NGLCR G  + A+ L +
Sbjct: 148 VVTFSTLLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLD 203

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVR 278
            M     E G+  +P+ ITY TI+DG+CK   + + L     M   S +      +PL R
Sbjct: 204 RML----EDGL--QPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLER 257

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQS-LPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                    C+I+G C   +   A++L Q  L R  + P+VVTYN LI     +G+  E 
Sbjct: 258 RT-------CMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEA 310

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           +       L+  +   G+ P   TY+ +I+ FCK  R+ +   +F  +     +PD +TF
Sbjct: 311 EE------LYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITF 364

Query: 398 TSLI 401
            +LI
Sbjct: 365 NTLI 368



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 19/334 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +   ML  +   P V ++N L     K   +     L+  +   G+ P   TY+ 
Sbjct: 272 SEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSS 331

Query: 131 LINCFCKMGRV---SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           +I+ FCK  R+    H F ++    + C +PD +TF +LI   C   R+ +   L  ++ 
Sbjct: 332 MIDGFCKQNRLDAAEHMFYLMA--TKGC-SPDIITFNTLIAGYCRAKRVDDGIKLLHEMT 388

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G   +  TY TLI+G C+ G    A +L +EM +       VC P+ +T +T++DGLC
Sbjct: 389 EAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSG-----VC-PNVVTCNTLLDGLC 442

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
                 + L        S ++  A + P   V+     +  LI GL    K   A EL++
Sbjct: 443 DNGKLKDALEMFKAMQKSKMDIDASH-PFNGVEPDVQTYNILISGLINEGKFLEAEELYE 501

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +P  G++P+ +TYN +I GLC   ++DE         +F  + S    P++ T+  LIN
Sbjct: 502 EMPHRGIVPDTITYNSVIHGLCKQSRLDEATQ------MFDSMGSKSFSPNVVTFTTLIN 555

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +CK GRV  G  +F  +       +A+T+ +LI
Sbjct: 556 GYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 589



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 147/335 (43%), Gaps = 24/335 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++D ML  R   P   +++ +     K    D    +F  +   G  PD  T+N L
Sbjct: 309 EAEELYDEMLP-RGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTL 367

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  +C+  RV  G  +L  +  +    + +T+T+LI   C    +  A  L  ++   G 
Sbjct: 368 IAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGV 427

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-----CEPDAITYSTIIDGL 246
             +V T NTL++GLC  G    AL +F+ M     +          EPD  TY+ +I GL
Sbjct: 428 CPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGL 487

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
             E              F    ++    P   +    + +  +I GLCK S+L  A ++F
Sbjct: 488 INE------------GKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMF 535

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            S+      PNVVT+  LI G C  G++D+         LF  +   G+  +  TY  LI
Sbjct: 536 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDG------LELFCEMGRRGIVANAITYITLI 589

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + F K+G ++    IF  ++ S   PD +T  +++
Sbjct: 590 HGFRKVGNINGALDIFQEMMASGVYPDTITIRNML 624



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 6/160 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++NIL   L     +     L++ +   G+ PD  TYN +I+  CK  R+     
Sbjct: 474 EPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQ 533

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +    F+P+ VTFT+LI   C   R+ +   LF ++   G   +  TY TLI+G  
Sbjct: 534 MFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFR 593

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           + G+   AL++F+EM   +G +     PD IT   ++ GL
Sbjct: 594 KVGNINGALDIFQEMM-ASGVY-----PDTITIRNMLTGL 627



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 55/134 (41%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N +   L K    D    +F  +      P+  T+  LIN +CK GRV  G  +
Sbjct: 510 PDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 569

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + R     +A+T+ +LI        I  A  +F ++   G   D  T   ++ GL  
Sbjct: 570 FCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWS 629

Query: 208 TGHTIVALNLFEEM 221
                 A+ + E++
Sbjct: 630 KEELKRAVAMLEDL 643



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD M   +   P V +F  L     K    D  L LF  +   G+  +  TY  
Sbjct: 529 DEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 587

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           LI+ F K+G ++    +   ++ S   PD +T  +++  L ++  +  A A+   L++
Sbjct: 588 LIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQM 645


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/356 (30%), Positives = 167/356 (46%), Gaps = 37/356 (10%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           +L+ +   P +  F  + G L K  HY  V+SL +++   GL  +  T +ILINC+ ++G
Sbjct: 2   LLHHKNPTPSIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLG 61

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           + +  F V   IL+  +  DA+TFT+LIK LC +  I +A     K+   G +L+  +Y 
Sbjct: 62  QNALSFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYG 121

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE---------- 249
           TLINGLC+ G T  AL     +       G + +PD + Y+TIIDGLCK+          
Sbjct: 122 TLINGLCKVGQTRAALEFLRRID------GKLVQPDVVMYNTIIDGLCKDKLVNDAFNLY 175

Query: 250 -----------AGSANFL--GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
                        + N L  G   MA       +     L  +      F  LID  CK 
Sbjct: 176 FEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKE 235

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRG--LCNDGQMDET------KHYETVFLLFK 348
            K+K A+ +F  + +  + PN+VTYN L+ G  L N  +  ++      K  +    LF+
Sbjct: 236 GKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFE 295

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            ++   ++PD+  YN LI+  CK GR        G +      PD  T+ SL+  L
Sbjct: 296 EMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDAL 351



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 148/332 (44%), Gaps = 38/332 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N +   L K K  +   +L+  +    + P   TYN LI   C M ++     
Sbjct: 149 QPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIG 208

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING-- 204
           +L +++     P   TF+ LI   C E ++ EA  +F  +     + ++ TYN+L++G  
Sbjct: 209 LLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHH 268

Query: 205 ---LCRTGHTIV---------ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
              + +   +I          A+NLFEEM      F  +  PD + Y+++IDGLCK   +
Sbjct: 269 LVNVVKKAKSIFNTMIKMVDEAMNLFEEM-----HFKQI-YPDMVIYNSLIDGLCKSGRT 322

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
              L F     +       F +              L+D LCK   +  A EL   L   
Sbjct: 323 PYALKFIGEMHYRGQPPDIFTYN------------SLLDALCKNYHVDKAIELLTKLKDQ 370

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+ P+V TYNILI GLC  G++ + +       +F+ L   G   D+YTYN +I  FCK 
Sbjct: 371 GIQPSVCTYNILINGLCKSGRLKDAEK------VFEDLLVKGYNTDVYTYNAMIKGFCKK 424

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G       +  ++  S  +PDA     +I+ L
Sbjct: 425 GLFDETLAMVSKMKDSGCSPDAKNCEIIIRSL 456



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 145/320 (45%), Gaps = 26/320 (8%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            S+  L   L K       L   +R++   + PD   YN +I+  CK   V+  F +   
Sbjct: 118 VSYGTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFE 177

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           ++     P  VT+ +LI  LC  +++ +A  L  K+ +      V+T++ LI+  C+ G 
Sbjct: 178 MVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGK 237

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG-----LCKEAGSANFLGFSCMASF- 264
              A N+F  M   +       +P+ +TY++++DG     + K+A S     F+ M    
Sbjct: 238 MKEAKNVFAVMMKED------VKPNIVTYNSLMDGHHLVNVVKKAKSI----FNTMIKMV 287

Query: 265 -SALNKMA-FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
             A+N     +F  +    +  N   LIDGLCK  +   A +    +   G  P++ TYN
Sbjct: 288 DEAMNLFEEMHFKQIYPDMVIYN--SLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYN 345

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            L+  LC      +  H +    L  +L   G+ P + TYNILIN  CK GR+     +F
Sbjct: 346 SLLDALC------KNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVF 399

Query: 383 GRILPSCFTPDAVTFTSLIK 402
             +L   +  D  T+ ++IK
Sbjct: 400 EDLLVKGYNTDVYTYNAMIK 419



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 169/385 (43%), Gaps = 52/385 (13%)

Query: 6   KINGRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDI 65
           +I+  + F D++          N+ SY T    L    + RA+LE FL+       + D+
Sbjct: 97  EIHKALHFHDKVV---AQGFKLNQVSYGTLINGLCKVGQTRAALE-FLRRIDGKLVQPDV 152

Query: 66  TSI-TPNEALC-------VFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKR 115
               T  + LC        F+    M   R  P V ++N L   L         + L  +
Sbjct: 153 VMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHK 212

Query: 116 LNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK-----DL 170
           + L  + P  YT++ILI+ FCK G++     V   +++    P+ VT+ SL+      ++
Sbjct: 213 MILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNV 272

Query: 171 CAESR---------IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
             +++         + EA  LF ++       D+  YN+LI+GLC++G T  AL    EM
Sbjct: 273 VKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEM 332

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
            +  G+      PD  TY++++D LCK     N+     +   + L           +Q 
Sbjct: 333 -HYRGQ-----PPDIFTYNSLLDALCK-----NYHVDKAIELLTKLKDQG-------IQP 374

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
               +  LI+GLCK  +LK A ++F+ L   G   +V TYN +I+G C  G  DET    
Sbjct: 375 SVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDET---- 430

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILI 366
               +  ++  +G  PD     I+I
Sbjct: 431 --LAMVSKMKDSGCSPDAKNCEIII 453



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 7/176 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F+ M + +   P +  +N L   L K+      L     ++  G  PD +TYN 
Sbjct: 288 DEAMNLFEEM-HFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNS 346

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK   V     +L ++      P   T+  LI  LC   R+ +A  +F  L V G
Sbjct: 347 LLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKG 406

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              DV+TYN +I G C+ G     L +  +M +        C PDA     II  L
Sbjct: 407 YNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSG------CSPDAKNCEIIIRSL 456



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 63/144 (43%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R   P + ++N L   L K  H D  + L  +L   G+ P   TYNILIN  CK GR
Sbjct: 332 MHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGR 391

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     V   +L   +  D  T+ ++IK  C +    E  A+ +K++  GC  D      
Sbjct: 392 LKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEI 451

Query: 201 LINGLCRTGHTIVALNLFEEMANG 224
           +I  L   G    A    E +  G
Sbjct: 452 IIRSLFDKGENDKAGKFREMIVRG 475


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 152/315 (48%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   ++N L   L K  H    + +   + L GL PD YTYN LI+  CK+G +     
Sbjct: 305 RPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVK 364

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L +++    +P+AVT+ ++I  LC E+R+ EA  +   L   G   DV T+N+LI GLC
Sbjct: 365 ILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLC 424

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            + +   A++LFEEM  G G     C PD  TY+ +ID LC        L        + 
Sbjct: 425 LSSNHKSAMDLFEEM-KGKG-----CRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNG 478

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +    +              LIDG CK  +++ A E+F  +   G+  + VTYN LI 
Sbjct: 479 CARNVVIYN------------TLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLID 526

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC      ++K  E    L  ++   GL PD +TYN L+  FCK G +     I   + 
Sbjct: 527 GLC------KSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMT 580

Query: 387 PSCFTPDAVTFTSLI 401
            S   PD VT+ +LI
Sbjct: 581 SSGCNPDIVTYATLI 595



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 152/353 (43%), Gaps = 59/353 (16%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY--------------- 128
           R  R  V++FNIL   L K       + + + +   GL PD  T+               
Sbjct: 197 RRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDG 256

Query: 129 --------------------NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
                               N+LIN FCK GR+      +   +   F PD  T+ +L+ 
Sbjct: 257 ALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVN 316

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
            LC       A  +   + + G + D++TYN+LI+GLC+ G    A+ + ++M + +   
Sbjct: 317 GLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRD--- 373

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
              C P+A+TY+ II  LCKE         + + +   +       P V        F  
Sbjct: 374 ---CSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGI------LPDV------CTFNS 418

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LI GLC  S  K A +LF+ +   G  P+  TYN+LI  LC+  +++E  +      L K
Sbjct: 419 LIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALN------LLK 472

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   G   ++  YN LI+ FCK  R+     IF  +     + D+VT+ +LI
Sbjct: 473 EMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLI 525



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 139/327 (42%), Gaps = 25/327 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ + D M++ R   P   ++N +   L K    D    + + L   G+ PD  T+N 
Sbjct: 360 EEAVKILDQMVS-RDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNS 418

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   C          +   +      PD  T+  LI  LC+  ++ EA  L  ++ + G
Sbjct: 419 LIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNG 478

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V  YNTLI+G C+      A  +F+EM     E   V   D++TY+T+IDGLCK  
Sbjct: 479 CARNVVIYNTLIDGFCKNKRIEEAEEIFDEM-----ELQGVSR-DSVTYNTLIDGLCKSK 532

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              +            L    F +              L+   CK   +K A ++ Q++ 
Sbjct: 533 RVEDAAQLMDQMIMEGLRPDKFTYN------------SLLTHFCKTGDIKKAADIVQTMT 580

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            +G  P++VTY  LI GLC  G++      +    L + +   G+    + YN +I    
Sbjct: 581 SSGCNPDIVTYATLISGLCKAGRV------QVASRLLRSIQMKGMVLTPHAYNPVIQALF 634

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTF 397
           K  R      +F  +L     PDA+T+
Sbjct: 635 KRNRTHEAMRLFREMLDKSEPPDAITY 661



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 140/334 (41%), Gaps = 24/334 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +   M +    +P    +N+L   L        V S    +    +  D  T+NI
Sbjct: 149 DEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNI 208

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   CK  +V    +++  +     +PD  TFT++++       +  A  +  ++  +G
Sbjct: 209 LIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYG 268

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C     T N LING C+ G    AL+  +E  +          PD  TY+T+++GLCK  
Sbjct: 269 CPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEG------FRPDQFTYNTLVNGLCKIG 322

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            + + +          L+   + +              LI GLCK+ +++ A ++   + 
Sbjct: 323 HAKHAMEVVDAMLLGGLDPDIYTYN------------SLISGLCKLGEIEEAVKILDQMV 370

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
                PN VTYN +I  LC + ++DE         + + L S G+ PD+ T+N LI   C
Sbjct: 371 SRDCSPNAVTYNAIISSLCKENRVDEATE------IARLLTSKGILPDVCTFNSLIQGLC 424

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                 S   +F  +      PD  T+  LI  L
Sbjct: 425 LSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSL 458



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 138/317 (43%), Gaps = 25/317 (7%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           F I      K + YD V+ + K + +   + PD   YN+L+N      ++         +
Sbjct: 135 FLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSM 194

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +R     D  TF  LIK LC   ++  A  +  ++  +G   D  T+ T++ G    G+ 
Sbjct: 195 VRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNL 254

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             AL + E+M     E+G  C    +T + +I+G CK+      L F   A         
Sbjct: 255 DGALRIKEQMV----EYGCPCTD--VTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQ 308

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F +              L++GLCKI   K A E+  ++   GL P++ TYN LI GLC  
Sbjct: 309 FTYN------------TLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKL 356

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G+++E         +  ++ S    P+  TYN +I+  CK  RV     I   +      
Sbjct: 357 GEIEEA------VKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGIL 410

Query: 392 PDAVTFTSLIKILEINS 408
           PD  TF SLI+ L ++S
Sbjct: 411 PDVCTFNSLIQGLCLSS 427



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 88/181 (48%), Gaps = 7/181 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  +FD M     SR  VT +N L   L K+K  +    L  ++ + GL PD++TYN 
Sbjct: 500 EEAEEIFDEMELQGVSRDSVT-YNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNS 558

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+  FCK G +     ++  +  S   PD VT+ +LI  LC   R+  A+ L   +++ G
Sbjct: 559 LLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKG 618

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             L    YN +I  L +   T  A+ LF EM + +        PDAITY  +  GLC   
Sbjct: 619 MVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSE------PPDAITYKIVYRGLCNGG 672

Query: 251 G 251
           G
Sbjct: 673 G 673



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 112/322 (34%), Gaps = 99/322 (30%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD-----VFT------------- 197
           F P +  +  +++ L           +  ++++ GCE D     +F              
Sbjct: 93  FVPSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVV 152

Query: 198 ------------------YNTLINGLC------------------RTGHTIVALN----- 216
                             YN L+N L                   R  H +   N     
Sbjct: 153 GIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKA 212

Query: 217 ------------LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
                       + EEM +    +G+   PD  T++TI+ G   E G+ +          
Sbjct: 213 LCKAHQVRPAILMMEEMPS----YGL--SPDETTFTTIMQGYI-EGGNLD---------- 255

Query: 265 SALNKMAFYFPLVRVQCLCLNFL--CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
                +     +V   C C +     LI+G CK  ++  A    Q     G  P+  TYN
Sbjct: 256 ---GALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYN 312

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            L+ GLC  G            LL       GL PD+YTYN LI+  CK+G +     I 
Sbjct: 313 TLVNGLCKIGHAKHAMEVVDAMLL------GGLDPDIYTYNSLISGLCKLGEIEEAVKIL 366

Query: 383 GRILPSCFTPDAVTFTSLIKIL 404
            +++    +P+AVT+ ++I  L
Sbjct: 367 DQMVSRDCSPNAVTYNAIISSL 388


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 159/320 (49%), Gaps = 28/320 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   ++N     L +  H    L +   +   G  PD +TYNI++NC CK G++     
Sbjct: 287 EPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKG 346

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L +++     PD  TF +LI  LC+ +R+ EA  L  ++ + G   DV+T+N LIN LC
Sbjct: 347 ILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALC 406

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G   +AL LFEEM +        C PD +TY+T+ID LC    S   LG     +   
Sbjct: 407 KVGDPQLALRLFEEMKSSG------CTPDEVTYNTLIDNLC----SLGKLG----KALDL 452

Query: 267 LNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           L +M          C    + +  +IDGLCK  +++ A E+F  +   G+  N +T+N L
Sbjct: 453 LKEME------SAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTL 506

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I GLC D ++D+         L  ++ S GL P+  TYN ++  +CK G +     I   
Sbjct: 507 IDGLCKDKRIDDANQ------LISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQT 560

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           +  + F  D VT+ +LI  L
Sbjct: 561 MTANGFEVDVVTYGTLINGL 580



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 149/313 (47%), Gaps = 26/313 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N L   L +      + +++  +   G+ PD  T+N L+   C+  +V    ++L  + 
Sbjct: 153 YNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMS 212

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  TFT+L++    E  I  A  +  ++   GC     T N LING C+ G   
Sbjct: 213 SSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVE 272

Query: 213 VALN-LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
            AL  + +E+ANG        EPD ITY+T ++GLC+     + L    +      +   
Sbjct: 273 DALGYIQQEIANG-------FEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDV 325

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F + +V V CLC N            +L+ A+ +   +   G +P++ T+N LI  LC+ 
Sbjct: 326 FTYNIV-VNCLCKN-----------GQLEEAKGILNQMVERGCLPDITTFNTLIVALCSG 373

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
            +++E         L +++   GL PD+YT+NILIN  CK+G       +F  +  S  T
Sbjct: 374 NRLEEA------LDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCT 427

Query: 392 PDAVTFTSLIKIL 404
           PD VT+ +LI  L
Sbjct: 428 PDEVTYNTLIDNL 440



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 149/339 (43%), Gaps = 35/339 (10%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  +P V +FN L   L +     T + + + ++ +G+ PD  T+  L+  F + G +  
Sbjct: 179 RGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKA 238

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              V  R+L    +P  VT   LI   C   R+ +A     +    G E D  TYNT +N
Sbjct: 239 ALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVN 298

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GLC+ GH   AL + + M           +PD  TY+ +++ LCK        G      
Sbjct: 299 GLCQNGHVGHALKVMDVMVQEGH------DPDVFTYNIVVNCLCKNGQLEEAKGI----- 347

Query: 264 FSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
              LN+M      V   CL     F  LI  LC  ++L+ A +L + +   GL P+V T+
Sbjct: 348 ---LNQM------VERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTF 398

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           NILI  LC  G        +    LF+ + S+G  PD  TYN LI+  C +G++     +
Sbjct: 399 NILINALCKVGD------PQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDL 452

Query: 382 FGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
              +  +      VT+ ++I       +I E    F Q+
Sbjct: 453 LKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQM 491



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 162/366 (44%), Gaps = 53/366 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  + + M+  R   P +T+FN L   L      +  L L +++ L GL PD YT+NI
Sbjct: 342 EEAKGILNQMVE-RGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNI 400

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK+G       +   +  S  TPD VT+ +LI +LC+  ++ +A  L  ++   G
Sbjct: 401 LINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAG 460

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C     TYNT+I+GLC+      A  +F++M +  G        +AIT++T+IDGLCK+ 
Sbjct: 461 CPRSTVTYNTIIDGLCKKMRIEEAEEVFDQM-DLQG-----ISRNAITFNTLIDGLCKDK 514

Query: 251 --GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
               AN L  S M S               +Q   + +  ++   CK   +K A ++ Q+
Sbjct: 515 RIDDANQL-ISQMISEG-------------LQPNNITYNSILTHYCKQGDIKKAADILQT 560

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMD----------------ETKHYETVFL------- 345
           +   G   +VVTY  LI GLC  G+                    K Y  V         
Sbjct: 561 MTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNN 620

Query: 346 ------LFKRLNSTGLFPDLYTYNILINCFCK-IGRVSSGFVIFGRILPSCFTPDAVTFT 398
                 LF+ +   G  PD +TY I+    C+  G +   F     ++   F P+  +F 
Sbjct: 621 TRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFR 680

Query: 399 SLIKIL 404
            L + L
Sbjct: 681 MLAEGL 686



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 38/253 (15%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D V +  L+  L   S++     +++++   G + DV T+NTL+  LCR      A+ + 
Sbjct: 149 DTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLML 208

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-------SANFLGFSCMASFSALNKMA 271
           EEM++     GV   PD  T++T++ G  +E          A  L   C  +   +N   
Sbjct: 209 EEMSSS----GVA--PDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVN--- 259

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
                            LI+G CK+ +++ A    Q     G  P+ +TYN  + GLC +
Sbjct: 260 ----------------VLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQN 303

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G      H      +   +   G  PD++TYNI++NC CK G++     I  +++     
Sbjct: 304 G------HVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCL 357

Query: 392 PDAVTFTSLIKIL 404
           PD  TF +LI  L
Sbjct: 358 PDITTFNTLIVAL 370



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 6/127 (4%)

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
           PL  +Q   + +  L++ L + SK+K+   ++  +   G+ P+VVT+N L++ LC   Q+
Sbjct: 142 PLFGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQV 201

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
                  T  L+ + ++S+G+ PD  T+  L+  F + G + +   +  R+L    +P  
Sbjct: 202 ------RTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTK 255

Query: 395 VTFTSLI 401
           VT   LI
Sbjct: 256 VTVNVLI 262


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 168/342 (49%), Gaps = 39/342 (11%)

Query: 68  ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYT 127
           I  ++A+  F  M++M P RP         G +AK K Y TV+SL  +++L G+  + YT
Sbjct: 65  IGIDDAMASFYRMIHMNP-RPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYT 123

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
            NILIN  C++  +     VL ++ +    PD+VTFT+LI  LC E RI EA  LF ++ 
Sbjct: 124 LNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMA 183

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
                 +  T+  L++ LC+ G    A  +FE M     E GV  EP+  TY+ +++G C
Sbjct: 184 GRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMT----EKGV--EPNIYTYNALMNGYC 237

Query: 248 --KEAGSAN-----FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
              E   A+      +G  C  S  +                   +  LI+G CK  ++ 
Sbjct: 238 LRLEMNDASKVFEIMVGKGCAPSVHS-------------------YSILINGYCKSRRID 278

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A+ L   +    L+PN VTYN L++GLC+   + E +       LFK++ S+G+ P+L 
Sbjct: 279 EAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQE------LFKKMCSSGMLPNLR 332

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           TY+IL++  CK G +     +   +      PD V +  LI+
Sbjct: 333 TYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQ 374



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 162/335 (48%), Gaps = 31/335 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ +F+ M   R + P   +F IL   L K         +F+ +   G+ P+ YTYN L
Sbjct: 174 EAVELFNEMAG-RDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNAL 232

Query: 132 INCFC---KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           +N +C   +M   S  F ++  + + C  P   +++ LI   C   RI EA AL T++  
Sbjct: 233 MNGYCLRLEMNDASKVFEIM--VGKGC-APSVHSYSILINGYCKSRRIDEAKALLTQMSE 289

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
                +  TYNTL+ GLC     + A  LF++M +     G++  P+  TYS ++DGLCK
Sbjct: 290 KELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSS----GML--PNLRTYSILLDGLCK 343

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                  L            K+       +++   + +  LI G+    KL++A+ELF  
Sbjct: 344 HGHLEEAL------------KLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSK 391

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   G+ P+V TYNI+I+GL  +G  DE       + LF+++   G  PD  +YN++I  
Sbjct: 392 LFANGIRPSVRTYNIMIKGLLKEGLSDE------AYKLFRKMEDDGFLPDSCSYNVIIQG 445

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           F +    S+   +   ++   F+ D+ TF  L+ +
Sbjct: 446 FLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLDL 480



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 9/181 (4%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  VF+ M+  +   P V S++IL     K++  D   +L  +++   L P+  TYN 
Sbjct: 243 NDASKVFEIMVG-KGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNT 301

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+   C    +     +  ++  S   P+  T++ L+  LC    + EA  L T ++   
Sbjct: 302 LMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERK 361

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            E D+  YN LI G+   G   VA  LF ++ ANG         P   TY+ +I GL KE
Sbjct: 362 LEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANG-------IRPSVRTYNIMIKGLLKE 414

Query: 250 A 250
            
Sbjct: 415 G 415



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+  N  T NILI  LC         H      +  ++   G+ PD  T+  LIN  C  
Sbjct: 116 GVAHNDYTLNILINSLC------RLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNE 169

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           GR+     +F  +      P+ VTFT L+ +L
Sbjct: 170 GRIKEAVELFNEMAGRDAMPNTVTFTILVDVL 201


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 158/319 (49%), Gaps = 32/319 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V  +N +   L K KH D  L+LFK +   G+ P+  TY+ LI+C C  GR S    
Sbjct: 48  EPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR 107

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++     PD  TF++LI     E +++EA  L+ ++     +  + TY++LING C
Sbjct: 108 LLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFC 167

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMA 262
                  A  +FE M + +      C PD +TY+T+I G CK    E G         M 
Sbjct: 168 MHDRLDEAKQMFEFMVSKH------CFPDVVTYNTLIKGFCKYKRVEEG---------ME 212

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
            F  +++       V        +  LI GL +     +A+E+F+ +   G+ PN++TYN
Sbjct: 213 VFREMSQRGLVGNTV-------TYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 265

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            L+ GLC +G++      E   ++F+ L  + + P +YTYNI+I   CK G+V  G+ +F
Sbjct: 266 TLLDGLCKNGKL------EKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 319

Query: 383 GRILPSCFTPDAVTFTSLI 401
             +      PD V + ++I
Sbjct: 320 CNLSLKGVKPDVVAYNTMI 338



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 129/309 (41%), Gaps = 26/309 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++D M+  R   P + +++ L          D    +F+ +     FPD  TYN L
Sbjct: 139 EAEKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 197

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  FCK  RV  G  V   + +     + VT+  LI+ L        A  +F ++   G 
Sbjct: 198 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 257

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             ++ TYNTL++GLC+ G    A+ +FE +           EP   TY+ +I+G+CK   
Sbjct: 258 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK------MEPTIYTYNIMIEGMCKAGK 311

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +     C  S   +       P V      + +  +I G C+    + A  LF+ +  
Sbjct: 312 VEDGWDLFCNLSLKGVK------PDV------VAYNTMISGFCRKGSKEEADALFKEMKE 359

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +PN   YN LIR    DG  + +        L K + S G   D  T  ++ N    
Sbjct: 360 DGTLPNSGCYNTLIRARLRDGDREASAE------LIKEMRSCGFAGDASTIGLVTNMLHD 413

Query: 372 IGRVSSGFV 380
            GR+   F+
Sbjct: 414 -GRLDKSFL 421



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 6/100 (6%)

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L   +   G  P++VTY +++ GLC  G  D        F L  ++    L P +  YN 
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD------LAFNLLNKMEQGKLEPGVLIYNT 56

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +I+  CK   +     +F  +      P+ VT++SLI  L
Sbjct: 57  IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 96


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 191/416 (45%), Gaps = 90/416 (21%)

Query: 53  LKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSL 112
           L+ER   +    +  I  ++A+ +F  M+  RP  P +  FN L   + K K YD V+SL
Sbjct: 52  LRERLSKT---RLRDIKLHDAINLFREMVKTRPF-PSIVDFNRLLSAIVKMKKYDVVISL 107

Query: 113 FKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
            K++ + G+  D YT+NI+INCFC   +VS    VLG++L+  + PD VT  SL+   C 
Sbjct: 108 GKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCR 167

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNT-------------------------------- 200
            +R+ +A +L  K+   G   D+  YN                                 
Sbjct: 168 RNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVT 227

Query: 201 ---LINGLCRTGHTIVALNLFEEMAN------------------GNGE-----------F 228
              L+NGLC +G    A  L  +M                     NG+            
Sbjct: 228 YTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMV 287

Query: 229 GVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
            +  +PD +TYS++I+GLC       AN + F  M S          FP V      +++
Sbjct: 288 RMSIDPDIVTYSSLINGLCLHDRIDEANQM-FDLMVSKGC-------FPDV------VSY 333

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LI+G CK  +++   +LF+ + + GL+ N VTYN LI+G    G +D+ + +      
Sbjct: 334 NTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEF------ 387

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           F +++S G+ PD++TYNIL+   C  G +    VIF  +  S    D VT+T++I+
Sbjct: 388 FSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQ 443



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 165/332 (49%), Gaps = 27/332 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ + D M+ +   RP + ++N +   L KT+  +  L  FK +   G+ P+  TY  
Sbjct: 172 SDAVSLVDKMVEI-GYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTA 230

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  C  GR +    +L  +++   TP+ +T+++L+       +++EA  +F ++    
Sbjct: 231 LVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMS 290

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D+ TY++LINGLC       A  +F+ M +        C PD ++Y+T+I+G CK  
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG------CFPDVVSYNTLINGFCKAK 344

Query: 251 GSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              + +  F  M+    +N    Y  L++             G  ++  +  A+E F  +
Sbjct: 345 RVEDGMKLFRKMSQRGLVNNTVTYNTLIQ-------------GFFQVGDVDKAQEFFSQM 391

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G+ P++ TYNIL+ GLC++G +      E   ++F+ +  + +  D+ TY  +I   
Sbjct: 392 DSFGVSPDIWTYNILLGGLCDNGLL------EKALVIFEDMQKSEMDLDIVTYTTVIQGM 445

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK G+V   + +F  +      PD VT+T+++
Sbjct: 446 CKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMM 477



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++NIL G L      +  L +F+ +  + +  D  TY  +I   CK G+V   + +
Sbjct: 398 PDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGL 457

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
              +      PD VT+T+++  LC +    E  AL+TK++  G
Sbjct: 458 FCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEG 500



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 48/159 (30%)

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           KL  A  LF+ + +    P++V +N L+  +       + K Y+ V  L K++   G+  
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIV------KMKKYDVVISLGKKMEVLGIRN 118

Query: 358 DLYTYNILINCFC-----------------------------------KIGRVSSGFVIF 382
           DLYT+NI+INCFC                                   +  RVS    + 
Sbjct: 119 DLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLV 178

Query: 383 GRILPSCFTPDAVTFTSLI----KILEIN---SFFRQVA 414
            +++   + PD V + ++I    K   +N    FF+++ 
Sbjct: 179 DKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIG 217


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 157/314 (50%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L   L K       +   +R+   G  PD +TYN +I+ +CK+  V     +
Sbjct: 256 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 315

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L   +   F PD VT+ SLI  LCAE  +  A  LF + +  G + D+  YN+L+ GLC 
Sbjct: 316 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 375

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  + AL +  EMA    E G  C PD  TY+ +I+GLCK    ++    + +    A+
Sbjct: 376 QGLILHALQVMNEMA----EEG--CHPDIQTYNIVINGLCKMGNISD----ATVVMNDAI 425

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             M  Y P V        F  LIDG CK  KL  A +L + +   G+ P+ +TYN ++ G
Sbjct: 426 --MKGYLPDV------FTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNG 477

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G+++E    ET    F+ +   G  P+  TYNILI  FC+  ++     +  ++  
Sbjct: 478 LCKAGKVNEVN--ET----FQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQ 531

Query: 388 SCFTPDAVTFTSLI 401
               PDAV+F +LI
Sbjct: 532 EGLHPDAVSFNTLI 545



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 160/338 (47%), Gaps = 30/338 (8%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           +L   P R  V    ++ G  A    +D    LF ++  T +FP+   +N +++  CK G
Sbjct: 145 LLRALPHRGAVAYCTVVCGLYAHGHTHDA-RQLFDQMLHTHVFPNLAAFNKVLHALCKRG 203

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V    ++LG++++   + +  T+   I+ LC   R+ EA  L   +R +    DV TYN
Sbjct: 204 DVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVP-DVVTYN 262

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TLI GLC+      A++    M N        C PD  TY+TIIDG CK          S
Sbjct: 263 TLIRGLCKKSMPQEAMHYLRRMMNQG------CLPDDFTYNTIIDGYCK---------IS 307

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            +   + L K A +   V  Q   + +  LI+GLC    ++ A ELF      G+ P++V
Sbjct: 308 MVQEATELLKDAVFKGFVPDQ---VTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV 364

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            YN L++GLC  G +           +   +   G  PD+ TYNI+IN  CK+G +S   
Sbjct: 365 VYNSLVKGLCLQGLILHA------LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDAT 418

Query: 380 VIFGRILPSCFTPDAVTFTSLI----KILEINSFFRQV 413
           V+    +   + PD  TF +LI    K L+++S  + V
Sbjct: 419 VVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLV 456



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 161/350 (46%), Gaps = 33/350 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD ML+     P + +FN +   L K         L  ++   G+  + +TYNI
Sbjct: 171 HDARQLFDQMLHTH-VFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 229

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I   C+ GR+    V L   +R+   PD VT+ +LI+ LC +S   EA     ++   G
Sbjct: 230 WIRGLCEAGRLPEA-VRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG 288

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  D FTYNT+I+G C+      A  L ++        G V  PD +TY ++I+GLC E 
Sbjct: 289 CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK----GFV--PDQVTYCSLINGLCAEG 342

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L     A    +       P + V      +  L+ GLC    +  A ++   + 
Sbjct: 343 DVERALELFNEAQAKGIK------PDIVV------YNSLVKGLCLQGLILHALQVMNEMA 390

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P++ TYNI+I GLC  G + +        ++       G  PD++T+N LI+ +C
Sbjct: 391 EEGCHPDIQTYNIVINGLCKMGNISDAT------VVMNDAIMKGYLPDVFTFNTLIDGYC 444

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           K  ++ S   +  R+      PD +T+ S++       K+ E+N  F+++
Sbjct: 445 KRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 494



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 160/395 (40%), Gaps = 68/395 (17%)

Query: 42  TVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA 101
            V D  +    ++  CK S         P EA+     M+N +   P   ++N +     
Sbjct: 254 AVPDVVTYNTLIRGLCKKS--------MPQEAMHYLRRMMN-QGCLPDDFTYNTIIDGYC 304

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K         L K     G  PD+ TY  LIN  C  G V     +          PD V
Sbjct: 305 KISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIV 364

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH----TIV---- 213
            + SL+K LC +  I+ A  +  ++   GC  D+ TYN +INGLC+ G+    T+V    
Sbjct: 365 VYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDA 424

Query: 214 ---------------------------ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
                                      AL L E M     E+G+   PD ITY+++++GL
Sbjct: 425 IMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM----WEYGIA--PDTITYNSVLNGL 478

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
           CK AG  N            +N+      L       + +  LI+  C+ +K++ A ++ 
Sbjct: 479 CK-AGKVN-----------EVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVI 526

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             + + GL P+ V++N LI G C +G +      E  +LLF++L   G      T+N LI
Sbjct: 527 VKMSQEGLHPDAVSFNTLIYGFCRNGDL------EGAYLLFQKLEEKGYSATADTFNTLI 580

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             F     +     IF  +L      D+ T+  LI
Sbjct: 581 GAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLI 615



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 117/293 (39%), Gaps = 40/293 (13%)

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  + + GR+        R+      P A  + +++  L   +   +A  ++ ++   G 
Sbjct: 60  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 119

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ T+   +   C T    +AL L   + +            A+ Y T++ GL     
Sbjct: 120 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----------AVAYCTVVCGLYAHGH 169

Query: 252 SAN-------FLGFSCMASFSALNKM-------------AFYFPLVRVQCLCLNFLC--- 288
           + +        L      + +A NK+                   V  + + +N      
Sbjct: 170 THDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 229

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
            I GLC+  +L  A  L   + RA  +P+VVTYN LIRGLC      E  HY       +
Sbjct: 230 WIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHY------LR 282

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           R+ + G  PD +TYN +I+ +CKI  V     +    +   F PD VT+ SLI
Sbjct: 283 RMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLI 335



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 6/163 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N +   L K    + V   F+ + L G  P+  TYNILI  FC+  ++     V
Sbjct: 466 PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKV 525

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + ++ +    PDAV+F +LI   C    +  A  LF KL   G      T+NTLI     
Sbjct: 526 IVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSG 585

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             +  +A  +F+EM +           D+ TY  +IDG CK A
Sbjct: 586 KLNMHMAEKIFDEMLSKGH------RADSYTYRVLIDGSCKTA 622



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 2/155 (1%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NE    F  M+ ++   P   ++NIL     ++   +    +  +++  GL PD  ++N 
Sbjct: 485 NEVNETFQEMI-LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNT 543

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  FC+ G +   +++  ++    ++  A TF +LI     +  +  A  +F ++   G
Sbjct: 544 LIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKG 603

Query: 191 CELDVFTYNTLINGLCRTGHTIVA-LNLFEEMANG 224
              D +TY  LI+G C+T +   A ++L E +  G
Sbjct: 604 HRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG 638



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +FN L G  +   +      +F  +   G   D YTY +LI+  CK   V   ++ L  +
Sbjct: 575 TFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEM 634

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           ++  F P   TF  +I  L    R+ +A  +   +   G   +V   +T++N 
Sbjct: 635 IKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV--DTILNA 685


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/331 (32%), Positives = 154/331 (46%), Gaps = 24/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +AL     M N     P   +FN L   L K  H    + +   +   G  PD YTYN 
Sbjct: 276 EDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNS 335

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK+G V     VL +++    +P+ VT+ +LI  LC E+++ EA  L   L   G
Sbjct: 336 VISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 395

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV T+N+LI GLC T +  VA+ LFEEM +        CEPD  TY+ +ID LC + 
Sbjct: 396 ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG------CEPDEFTYNMLIDSLCSKG 449

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L        S   +              + +  LIDG CK +K + A E+F  + 
Sbjct: 450 KLDEALNMLKQMELSGCARSV------------ITYNTLIDGFCKANKTREAEEIFDEME 497

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+  N VTYN LI GLC      +++  E    L  ++   G  PD YTYN L+  FC
Sbjct: 498 VHGVSRNSVTYNTLIDGLC------KSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFC 551

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + G +     I   +  +   PD VT+ +LI
Sbjct: 552 RGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 165/354 (46%), Gaps = 34/354 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E L V D+M++    +P    +N +   L        V     ++++ G+ PD  T+N+
Sbjct: 135 DEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNV 194

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   C+  ++    ++L  +      PD  TFT++++    E  +  A  +  ++  FG
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFG 254

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C     + N +++G C+ G    ALN  +EM+N +G F     PD  T++T+++GLCK  
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFF-----PDQYTFNTLVNGLCKAG 309

Query: 251 GSANFLG--------------FSCMASFSALNKMAFYFPLVRVQCLCLNFLC-------- 288
              + +               ++  +  S L K+      V V    +   C        
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYN 369

Query: 289 -LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI  LCK ++++ A EL + L   G++P+V T+N LI+GLC       T+++     LF
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC------LTRNHRVAMELF 423

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + + S G  PD +TYN+LI+  C  G++     +  ++  S      +T+ +LI
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 125/261 (47%), Gaps = 20/261 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ +F+ M + +   P   ++N+L   L      D  L++ K++ L+G      TYN LI
Sbjct: 419 AMELFEEMRS-KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + FCK  +      +   +     + ++VT+ +LI  LC   R+ +AA L  ++ + G +
Sbjct: 478 DGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQK 537

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D +TYN+L+   CR G    A ++ + M + NG     CEPD +TY T+I GLCK AG 
Sbjct: 538 PDKYTYNSLLTHFCRGGDIKKAADIVQAMTS-NG-----CEPDIVTYGTLISGLCK-AGR 590

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS-LPR 311
                          +K+     +  +      +  +I GL +  K   A  LF+  L +
Sbjct: 591 V-----------EVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQ 639

Query: 312 AGLMPNVVTYNILIRGLCNDG 332
               P+ V+Y I+ RGLCN G
Sbjct: 640 NEAPPDAVSYRIVFRGLCNGG 660



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 6/180 (3%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD M     SR  VT +N L   L K++  +    L  ++ + G  PD+YTYN L
Sbjct: 488 EAEEIFDEMEVHGVSRNSVT-YNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +  FC+ G +     ++  +  +   PD VT+ +LI  LC   R+  A+ L   +++ G 
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            L    YN +I GL R   T  A+NLF EM   N        PDA++Y  +  GLC   G
Sbjct: 607 NLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNE-----APPDAVSYRIVFRGLCNGGG 661


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/322 (31%), Positives = 166/322 (51%), Gaps = 25/322 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  RP  P +  FN L   +AK K +D V+SL +++   G+  + YTYNILINCFC+  
Sbjct: 1   MVKSRP-LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRS 59

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++S    +LG++++  + P  VT +SL+   C   RI +A AL  ++   G   D  T+ 
Sbjct: 60  QISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFT 119

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TLI+GL        A+ L + M          C+P+ +TY  +++GLCK  G  +     
Sbjct: 120 TLIHGLFLHNKASEAVALVDRMVQRG------CQPNLVTYGVVVNGLCKR-GDIDL---- 168

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
              +F+ LNKM       +++   + F  +ID LCK   +  A  LF+ +   G+ PNVV
Sbjct: 169 ---AFNLLNKM----EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVV 221

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY+ LI  LC+ G+  +     +  ++ K++N     P+L T+N LI+ F K G+     
Sbjct: 222 TYSSLISCLCSYGRWSDASQLLSD-MIEKKIN-----PNLVTFNALIDAFVKEGKFVEAE 275

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +   ++     PD  T+ SLI
Sbjct: 276 KLHDDMIKRSIDPDIFTYNSLI 297



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 149/316 (47%), Gaps = 32/316 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  FN +   L K +H D  L+LFK +   G+ P+  TY+ LI+C C  GR S    +L 
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 244

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P+ VTF +LI     E + +EA  L   +     + D+FTYN+LING C   
Sbjct: 245 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHD 304

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMASFS 265
               A  +FE M + +      C PD  TY+T+I G CK    E G+  F   S      
Sbjct: 305 RLDKAKQMFEFMVSKD------CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 358

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                             + +  LI GL        A+++F+ +   G+ P+++TY+IL+
Sbjct: 359 D----------------TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILL 402

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLCN+G++      E    +F  +  + +  D+Y Y  +I   CK G+V  G+ +F  +
Sbjct: 403 DGLCNNGKL------EKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 456

Query: 386 LPSCFTPDAVTFTSLI 401
                 P+ VT+ ++I
Sbjct: 457 SLKGVKPNVVTYNTMI 472



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 145/321 (45%), Gaps = 30/321 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +FN L     K   +     L   +    + PD +TYN LIN FC   R+     +
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312

Query: 148 LG-RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
               + + CF PD  T+ +LIK  C   R+ +   LF ++   G   D  TY TLI GL 
Sbjct: 313 FEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 371

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A  +F++M +     GV   PD +TYS ++DGLC        L        S 
Sbjct: 372 HDGDCDNAQKVFKQMVSD----GV--PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 425

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           + K+  Y            +  +I+G+CK  K+    +LF SL   G+ PNVVTYN +I 
Sbjct: 426 I-KLDIYI-----------YTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMIS 473

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG-RVSSGFVIFGRI 385
           GLC+   + E       + L K++   G  PD  TYN LI    + G + +S  +I  R 
Sbjct: 474 GLCSKRLLQEA------YALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELI--RE 525

Query: 386 LPSC-FTPDAVTFTSLIKILE 405
           + SC F  DA T   +  +L 
Sbjct: 526 MRSCRFVGDASTIGLVANMLH 546



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 24/247 (9%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P    F  L+  +    +     +L  K++  G   +++TYN LIN  CR     +AL L
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
             +M     + G   EP  +T S++++G C     ++      +A    + +M  Y P  
Sbjct: 68  LGKMM----KLGY--EPSIVTLSSLLNGYCHGKRISD-----AVALVDQMVEMG-YRPDT 115

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                 + F  LI GL   +K   A  L   + + G  PN+VTY +++ GLC  G +D  
Sbjct: 116 ------ITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDID-- 167

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                 F L  ++ +  +  D+  +N +I+  CK   V     +F  +      P+ VT+
Sbjct: 168 ----LAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTY 223

Query: 398 TSLIKIL 404
           +SLI  L
Sbjct: 224 SSLISCL 230


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 153/314 (48%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FN+L   L+KT H    L +   +   G  PD YTYN LI+  CK+G V     V
Sbjct: 299 PDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKV 358

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L +++    +P+ VT+ ++I  LC E+++ EA  L   L   G   DV TYN+LI GLC 
Sbjct: 359 LNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCL 418

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           + +  VA+ L++EM          C PD  TY+ +ID LC       F G     + + L
Sbjct: 419 SRNHTVAMELYKEMKTKG------CHPDEFTYNMLIDSLC-------FRG-KLQEALNLL 464

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +M        V    + +  LIDG CK  ++  A E+F  +   G+  N VTYN LI G
Sbjct: 465 KEMEVSGCARNV----ITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDG 520

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC   +++E         L  ++   GL PD +TYN L+  FCK G +     I   +  
Sbjct: 521 LCKSERVEEASQ------LMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMAS 574

Query: 388 SCFTPDAVTFTSLI 401
               PD VT+ +LI
Sbjct: 575 DGCEPDIVTYGTLI 588



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 150/354 (42%), Gaps = 60/354 (16%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG---- 139
           R  RP V++FNIL   L +       + L + +   GL PD  T+  ++  F + G    
Sbjct: 189 RGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDG 248

Query: 140 --RVSH-------------------GFVVLGRI-----------LRSCFTPDAVTFTSLI 167
             RV                     GF   GRI           LR  F PD  TF  L+
Sbjct: 249 AMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLV 308

Query: 168 KDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 227
             L     +  A  +   +   G + D++TYN+LI+GLC+ G    A+ +  +M   +  
Sbjct: 309 NGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERD-- 366

Query: 228 FGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
               C P+ +TY+TII  LCKE                   K+A       +      + 
Sbjct: 367 ----CSPNTVTYNTIISTLCKE------------NQVEEATKLALVLTGKGILPDVCTYN 410

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI GLC      +A EL++ +   G  P+  TYN+LI  LC  G++ E  +      L 
Sbjct: 411 SLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALN------LL 464

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K +  +G   ++ TYN LI+ FCK  R++    IF ++     + ++VT+ +LI
Sbjct: 465 KEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLI 518



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 18/246 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   ++N+L   L         L+L K + ++G   +  TYN LI+ FCK  R++    
Sbjct: 438 HPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEE 497

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++     + ++VT+ +LI  LC   R+ EA+ L  ++ + G   D FTYN+L+   C
Sbjct: 498 IFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFC 557

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A ++ + MA+        CEPD +TY T+I GLCK AG              A
Sbjct: 558 KAGDIKKAADIVQTMASDG------CEPDIVTYGTLIAGLCK-AGRV-----------EA 599

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             K+     +  +      +  +I  L +  + K A  LF+ +      P+ VTY I+ R
Sbjct: 600 ATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFR 659

Query: 327 GLCNDG 332
           GLC  G
Sbjct: 660 GLCQGG 665



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 165/376 (43%), Gaps = 72/376 (19%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLF---KRLNLT----------GLFPDRYTYNILINCFC 136
           V +  + FG +A T  Y+ +L++     +L L           G+ PD  T+NILI   C
Sbjct: 147 VDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALC 206

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           +  ++    +++  +      PD  TFT++++    E  +  A  +  ++   GC +   
Sbjct: 207 RAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNV 266

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMA----------------NGNGEFGVVC-------- 232
           T N L+NG C+ G    AL   EEM+                NG  + G V         
Sbjct: 267 TVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDM 326

Query: 233 ------EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CL 284
                 +PD  TY+++I GLCK       LG     +   LN+M      +   C    +
Sbjct: 327 MLREGFDPDIYTYNSLISGLCK-------LG-EVDEAVKVLNQM------IERDCSPNTV 372

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  +I  LCK ++++ A +L   L   G++P+V TYN LI+GLC       ++++    
Sbjct: 373 TYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLC------LSRNHTVAM 426

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI--- 401
            L+K + + G  PD +TYN+LI+  C  G++     +   +  S    + +T+ +LI   
Sbjct: 427 ELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGF 486

Query: 402 ----KILEINSFFRQV 413
               +I E    F Q+
Sbjct: 487 CKNKRIAEAEEIFDQM 502



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 85/180 (47%), Gaps = 7/180 (3%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD M     SR  VT +N L   L K++  +    L  ++ + GL PD++TYN L
Sbjct: 494 EAEEIFDQMELQGVSRNSVT-YNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSL 552

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +  FCK G +     ++  +      PD VT+ +LI  LC   R+  A  L   +++ G 
Sbjct: 553 LTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGI 612

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            L    YN +I  L R   +  A+ LF EM            PDA+TY  +  GLC+  G
Sbjct: 613 NLTPHAYNPVIQALFRRKRSKEAVRLFREMIEK------AEAPDAVTYKIVFRGLCQGGG 666


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 154/318 (48%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   +F+     L +  H D  L +   +   G  PD YTY+ +INC C  G +     
Sbjct: 298 EPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKG 357

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++ +++ S   PD  TF +LI  LC E+++ EA  L  +L V G   +V+T+N LIN LC
Sbjct: 358 IVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALC 417

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G   +A+ LFEEM +        C PD +TY+ +ID LC     A  L        S 
Sbjct: 418 KVGDPHLAVRLFEEMKSSG------CTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSG 471

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +              + +  +IDGLCK  +++ A E+F  +   G+  N +T+N LI 
Sbjct: 472 CPQST------------VTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLID 519

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLCN  ++D+         L  ++ S GL P+  TYN ++  +CK G +S    I   + 
Sbjct: 520 GLCNAERIDDAAE------LVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMT 573

Query: 387 PSCFTPDAVTFTSLIKIL 404
            + F  D VT+ +LI  L
Sbjct: 574 ANGFEVDVVTYATLINGL 591



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 146/317 (46%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T+F  L     +    +  L L  R++  G  P   T N+LIN +CK+GRV      
Sbjct: 229 PDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGY 288

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + + +   F PD VTF++ +  LC    +  A  +   +   GCE DV+TY+T+IN LC 
Sbjct: 289 IQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCN 348

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  +  +M +        C PD  T++T+I  LC E      L  +   +   L
Sbjct: 349 NGELEEAKGIVNQMVDSG------CLPDTTTFNTLIVALCTENQLEEALDLARELTVKGL 402

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +   + F +            LI+ LCK+    +A  LF+ +  +G  P+ VTYNILI  
Sbjct: 403 SPNVYTFNI------------LINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDN 450

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC+ G++ +         L K +  +G      TYN +I+  CK  R+     +F ++  
Sbjct: 451 LCSSGKLAK------ALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDV 504

Query: 388 SCFTPDAVTFTSLIKIL 404
           +    +A+TF +LI  L
Sbjct: 505 TGIGRNAITFNTLIDGL 521



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 153/335 (45%), Gaps = 26/335 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +    L+M   +     +N L   LA+      + S +  ++  G+ PD  T+N 
Sbjct: 142 DDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNT 201

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  C+  +     ++L  +      PD  TFT+L++    E  I  A  L  ++   G
Sbjct: 202 VIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMG 261

Query: 191 CELDVFTYNTLINGLCRTGHTIVALN-LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           C     T N LING C+ G    AL  + +E+A+G        EPD +T+ST ++GLC+ 
Sbjct: 262 CSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADG-------FEPDRVTFSTFVNGLCQN 314

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
               + L    +          + +  V + CLC N            +L+ A+ +   +
Sbjct: 315 GHVDHALKVLGLMLQEGCEPDVYTYSTV-INCLCNN-----------GELEEAKGIVNQM 362

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             +G +P+  T+N LI  LC + Q++E         L + L   GL P++YT+NILIN  
Sbjct: 363 VDSGCLPDTTTFNTLIVALCTENQLEE------ALDLARELTVKGLSPNVYTFNILINAL 416

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           CK+G       +F  +  S  TPD VT+  LI  L
Sbjct: 417 CKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNL 451



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 147/336 (43%), Gaps = 35/336 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V +FN +   L + +   T + + + ++   + PD  T+  L+  F + G +     
Sbjct: 193 EPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALR 252

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  R+     +P +VT   LI   C   R+ +A     +    G E D  T++T +NGLC
Sbjct: 253 LKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLC 312

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + GH   AL +   M          CEPD  TYST+I+ LC         G         
Sbjct: 313 QNGHVDHALKVLGLMLQEG------CEPDVYTYSTVINCLCNNGELEEAKGI-------- 358

Query: 267 LNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           +N+M      V   CL     F  LI  LC  ++L+ A +L + L   GL PNV T+NIL
Sbjct: 359 VNQM------VDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNIL 412

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I  LC  G      H      LF+ + S+G  PD  TYNILI+  C  G+++    +   
Sbjct: 413 INALCKVGD----PHL--AVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKE 466

Query: 385 ILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           +  S      VT+ ++I       +I E    F Q+
Sbjct: 467 MEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQM 502



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 155/344 (45%), Gaps = 42/344 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T+FN L   L      +  L L + L + GL P+ YT+NILIN  CK+G       +
Sbjct: 369 PDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRL 428

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +  S  TPD VT+  LI +LC+  ++ +A  L  ++ V GC     TYNT+I+GLC+
Sbjct: 429 FEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCK 488

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCK----------------EA 250
                 A  +F++M   G G        +AIT++T+IDGLC                 E 
Sbjct: 489 RRRIEEAEEVFDQMDVTGIGR-------NAITFNTLIDGLCNAERIDDAAELVDQMISEG 541

Query: 251 GSANFLGFSCMASF----SALNKMAFYFPLVRV---QCLCLNFLCLIDGLCKISKLKIAR 303
              N + ++ + +       ++K A     +     +   + +  LI+GLCK  + + A 
Sbjct: 542 LQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAAL 601

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGL--CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           +L + +   G+ P    YN +I+ L   N+G+            LF+ +   G  PD +T
Sbjct: 602 KLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGR--------DALSLFREMTEVGGPPDAFT 653

Query: 362 YNILINCFCKIGR-VSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           Y I+    C+ G  +   F     +  + F P+  +F  L + L
Sbjct: 654 YKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGL 697



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 139/324 (42%), Gaps = 44/324 (13%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLF-KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           V SF    G  A+ + +D    L   +L++ G+  +   YN L+    +  ++       
Sbjct: 128 VQSF---IGSYARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKI------- 177

Query: 149 GRILRSCFT--------PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
            ++L S +T        PD VTF ++I  LC   +   A  +  ++       D  T+ T
Sbjct: 178 -KLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTT 236

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           L+ G    G    AL L   M+    E G  C P ++T + +I+G CK     + LG+  
Sbjct: 237 LMEGFVEEGSIEAALRLKARMS----EMG--CSPTSVTVNVLINGYCKLGRVGDALGY-- 288

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                   ++A  F   RV      F   ++GLC+   +  A ++   + + G  P+V T
Sbjct: 289 -----IQQEIADGFEPDRV-----TFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYT 338

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+ +I  LCN+G+++E K       +  ++  +G  PD  T+N LI   C   ++     
Sbjct: 339 YSTVINCLCNNGELEEAKG------IVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALD 392

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           +   +     +P+  TF  LI  L
Sbjct: 393 LARELTVKGLSPNVYTFNILINAL 416



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 31/207 (14%)

Query: 76  VFDYMLNMRPSRPPVTS--FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
             D +  M  S  P ++  +N +   L K +  +    +F ++++TG+  +  T+N LI+
Sbjct: 460 ALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLID 519

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             C   R+     ++ +++     P+ VT+ S++   C +  I +AA +   +   G E+
Sbjct: 520 GLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEV 579

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMA----------------------NGNGEFGVV 231
           DV TY TLINGLC+   T  AL L   M                       NG     + 
Sbjct: 580 DVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLF 639

Query: 232 CE-------PDAITYSTIIDGLCKEAG 251
            E       PDA TY  +  GLC+  G
Sbjct: 640 REMTEVGGPPDAFTYKIVFRGLCRGGG 666


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/366 (32%), Positives = 178/366 (48%), Gaps = 42/366 (11%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRP-PVTSFNILFGCLAKTKHY 106
            LEQF+ E C  SG+     + P +AL +FD +L  + +RP  + + N L   +A+    
Sbjct: 64  ELEQFIGE-CYRSGD-----LGPEDALDLFDELL--QRARPGSIYALNQLLTTVARAPVS 115

Query: 107 DTV-------LSLFKRLNLTG---LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF 156
            +V       +S+F R+   G   + PD  T+ ILI+C C  G ++ GF  LG+I+++  
Sbjct: 116 SSVRDGPALAVSMFNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGL 175

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAAL-FTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
              AVTFT L++ LCAE R  +A  +   ++   GC  DVF+Y TL+ GLC       A 
Sbjct: 176 RAQAVTFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAA 235

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            L   MA    E G  C P+ ++Y+T+I G  KE          C         +    P
Sbjct: 236 ELIHMMA----EDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFC-------KMLDHGIP 284

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
              V C       +IDGLCK+  +  A  + Q +    +MPN  TYN LI G  + GQ  
Sbjct: 285 PNVVTC-----NSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWT 339

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           E         + K ++  G  P++ TY++LI+C CK G  +    IF  ++ S   P+A 
Sbjct: 340 E------AVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNAS 393

Query: 396 TFTSLI 401
           T+ SL+
Sbjct: 394 TYGSLL 399



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 155/358 (43%), Gaps = 68/358 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T++N L      +  +   + + K ++  G  P+  TY++LI+C CK G  +    +
Sbjct: 320 PNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREI 379

Query: 148 LGRILRSCFTPDAVTFTSL---------------IKDL--------------------CA 172
              +++S   P+A T+ SL               +KDL                    C 
Sbjct: 380 FNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCK 439

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
             R+ EA+  F K++  G   D+  Y T+I+GLC+ G    A++ F +M +         
Sbjct: 440 CGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDG------L 493

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN-FLCLID 291
            PD IT++T+I             GF+    +    ++ FY  + R     +N F  +ID
Sbjct: 494 SPDIITFNTLIH------------GFALHGKWEKAEEL-FYEMMDRGIPPNVNTFNSMID 540

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET-KHYETVFL----- 345
            L K  K+  AR+LF  +PRAG  PNVV+YN +I G    G++ E  K  + + L     
Sbjct: 541 KLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKP 600

Query: 346 -------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                  L   + S GL PD+ T   LI+  C+ GR+     +F  +L      D +T
Sbjct: 601 TAVTFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTIT 658



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 118/291 (40%), Gaps = 45/291 (15%)

Query: 76  VFDYMLN--MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           V D M+   MRP R     FNI      K    D     F ++   G  PD   Y  +I+
Sbjct: 414 VKDLMVQNGMRPGR---HVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVID 470

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK+GR+        +++    +PD +TF +LI       +  +A  LF ++   G   
Sbjct: 471 GLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPP 530

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           +V T+N++I+ L + G    A  LF+ M           +P+ ++Y+T+I G        
Sbjct: 531 NVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGA------KPNVVSYNTMIHGY------- 577

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
            F+          L+ M     L+ ++   + F  L+DG+  +                G
Sbjct: 578 -FIAGEVGEVMKLLDDML----LIGLKPTAVTFNTLLDGMVSM----------------G 616

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L P+VVT   LI   C DG++      E +  LF+ +       D  T NI
Sbjct: 617 LKPDVVTCKTLIDSCCEDGRI------EDILTLFREMLGKADKTDTITENI 661



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 67/172 (38%), Gaps = 22/172 (12%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           Y +  R   P V +FN +   L K         LF  +   G  P+  +YN +I+ +   
Sbjct: 521 YEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIA 580

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G V     +L  +L     P AVTF +L+  + +                 G + DV T 
Sbjct: 581 GEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVS----------------MGLKPDVVTC 624

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            TLI+  C  G     L LF EM       G   + D IT +  + G+  +A
Sbjct: 625 KTLIDSCCEDGRIEDILTLFREM------LGKADKTDTITENIKLRGVTVKA 670



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++F    R  +  + PD+ T+ ILI+C C  G ++ GF   G+I+ +     AVTFT L+
Sbjct: 127 SMFNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLL 186

Query: 402 KIL 404
           + L
Sbjct: 187 RTL 189


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/355 (33%), Positives = 162/355 (45%), Gaps = 45/355 (12%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYTYNILINCF 135
           F  ML + P  P +  FN+LFG +AK++HY T +SL K L+  G    D  T NI INC 
Sbjct: 62  FHRMLTLTPF-PCIQDFNLLFGLVAKSQHYATAISLIKILHSLGDGSADVCTLNIAINCL 120

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C M + + GF VLG + +    P  VT  +++  LC E  +  A  L  K+   G   + 
Sbjct: 121 CHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCNA 180

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGN----------------------------GE 227
            TY  L+NGLC+ G T  AL   ++M   N                             E
Sbjct: 181 RTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEALGLLHE 240

Query: 228 FGVV-CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
            GVV  EP+ +TY+ +I GLC E G         +  F+ +       P V+       F
Sbjct: 241 MGVVNVEPNVVTYNCLIQGLCGEFGGWR----EGVGLFNEMVAEKGIVPDVQ------TF 290

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             L+DG CK   L  A  +   + R G+ PNVVTYN LI G C   QM+E      VF L
Sbjct: 291 SILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMR---VFGL 347

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             R    G  P + T+N LI+ +CK+  V     +   ++     PD  T+TSLI
Sbjct: 348 MVR-EGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLI 401



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 156/356 (43%), Gaps = 53/356 (14%)

Query: 87  RPPVTSFNILF-GCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHG 144
            P V ++N L  G   +   +   + LF  +    G+ PD  T++IL++ FCK G +   
Sbjct: 247 EPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRA 306

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL--RVFGCELDVFTYNTLI 202
             V+G ++R    P+ VT+ SLI   C  S++ EA  +F  +     GC   V T+N+LI
Sbjct: 307 ESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLI 366

Query: 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--------------- 247
           +G C+      A++L  EM  G G      +PD  T++++I G C               
Sbjct: 367 HGWCKVKEVDKAMSLLSEMV-GKG-----LDPDVFTWTSLIGGFCEVKKPLAARELFFTM 420

Query: 248 KEAGSAN---------------FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
           KE G                  +L    +  F A+ K      +V        +  ++DG
Sbjct: 421 KEHGQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVI-------YNIMLDG 473

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           +CK+ KL  AR+L   +   GL  +  TYNI+I+GLC +G +D+ +       L +++  
Sbjct: 474 MCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEE------LLRKMKE 527

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            G  P+  +YN+ +    +   ++        +    F  DA T   LI+ L  N 
Sbjct: 528 NGCPPNKCSYNVFVQGLLRKYDIARSRKYLQIMKDKGFPVDATTAELLIRFLSANE 583


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 175/366 (47%), Gaps = 48/366 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F+ +L   P+ PP   FN + G L K+KHY TVL L +++   G+ P+    NI
Sbjct: 44  DDAVSLFNRLLQQNPT-PPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 102

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM----------EAA 180
           LIN FC++G +   F VL +IL+  + P+ +T  +LIK LC   +I           +A 
Sbjct: 103 LINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAV 162

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
            LF K+ +     DV+T+  L++G C+ G    A N+   M           +P  +TY+
Sbjct: 163 DLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQG------IKPGVVTYN 216

Query: 241 TIIDG--LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL---------------- 282
           +++DG  L K+   A  + F+ MA       +  Y  L+   C                 
Sbjct: 217 SLMDGYFLVKQVNKAKSI-FNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHH 275

Query: 283 ------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
                  + +  LIDGLCK  K+  A +L   +   G  PN+VTY+ ++  LC + Q+D 
Sbjct: 276 KQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVD- 334

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                    L  ++ + G+ P++YTY ILI   C+ G++     +F  +L      +  T
Sbjct: 335 -----NAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYT 389

Query: 397 FTSLIK 402
           +T +I+
Sbjct: 390 YTVMIQ 395



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 130/280 (46%), Gaps = 35/280 (12%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           + LF ++ L  + PD YT+ IL++ FCK GRV     VL  ++     P  VT+ SL+  
Sbjct: 162 VDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDG 221

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
                ++ +A ++F  +   G   D+ +Y+ LING C+      A+ L +EM +      
Sbjct: 222 YFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQ---- 277

Query: 230 VVCEPDAITYSTIIDGLCKEAGSA----------------NFLGFSCM-----ASFSALN 268
               P+ +TYS++IDGLCK    +                N + +S +      +    N
Sbjct: 278 --IIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDN 335

Query: 269 KMAFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            +A    +    +Q     +  LI GLC+  KL+ AR++F+ L   G   NV TY ++I+
Sbjct: 336 AIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQ 395

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           G C+ G  DE         L  ++   G  P+  TY I+I
Sbjct: 396 GFCDKGLFDEA------LTLLSKMEDNGCIPNAKTYEIII 429



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 20/250 (8%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+ ++  +P V ++N L       K  +   S+F  +   G+ PD  +Y+ILIN FCK+ 
Sbjct: 202 MMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIK 261

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            +     +L  +      P+ VT++SLI  LC   +I  A  L  ++   G   ++ TY+
Sbjct: 262 MMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYS 321

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           ++++ LC+      A+ L  +M N         +P+  TY+ +I GLC+     +     
Sbjct: 322 SILDALCKNHQVDNAIALLTQMKNQG------IQPNMYTYTILIKGLCQSGKLEDA---- 371

Query: 260 CMASFSALNKMAFYFPLVRVQCLCL-NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                    +  F   LV+   L +  +  +I G C       A  L   +   G +PN 
Sbjct: 372 ---------RKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNA 422

Query: 319 VTYNILIRGL 328
            TY I+I  L
Sbjct: 423 KTYEIIILSL 432



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 93/214 (43%), Gaps = 42/214 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  +F+ M  +  S P + S++IL     K K  D  + L K ++   + P+  TY+ 
Sbjct: 229 NKAKSIFNTMAQLGVS-PDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSS 287

Query: 131 LINCFCKMGRVSHGF-----------------------------------VVLGRILRSC 155
           LI+  CK G++S+                                      +L ++    
Sbjct: 288 LIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQG 347

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             P+  T+T LIK LC   ++ +A  +F  L V G  L+V+TY  +I G C  G    AL
Sbjct: 348 IQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEAL 407

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            L  +M + NG     C P+A TY  II  L K+
Sbjct: 408 TLLSKMED-NG-----CIPNAKTYEIIILSLFKK 435



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 9/190 (4%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL + D M + R   P + +++ +   L K    D  ++L  ++   G+ P+ YTY ILI
Sbjct: 301 ALKLVDEMHD-RGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILI 359

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              C+ G++     V   +L      +  T+T +I+  C +    EA  L +K+   GC 
Sbjct: 360 KGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCI 419

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG------- 245
            +  TY  +I  L +     +A  L  EM   N +  V    D I  S  + G       
Sbjct: 420 PNAKTYEIIILSLFKKDENEMAEKLLCEMIETNFDGRVALTNDLIA-SIWVTGSSPGNSL 478

Query: 246 LCKEAGSANF 255
           LCK+ G A +
Sbjct: 479 LCKKQGKAAY 488



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 6/107 (5%)

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  LF  L +    P  + +N ++      G + ++KHY TV  L +++   G+ P+L  
Sbjct: 46  AVSLFNRLLQQNPTPPNIEFNKIL------GSLVKSKHYHTVLYLSQKMEFRGIKPNLVN 99

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            NILIN FC++G + S F +  +IL   + P+ +T  +LIK L +N 
Sbjct: 100 CNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNG 146


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 159/317 (50%), Gaps = 28/317 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++  +   LAK K  +  ++L +++   G  P   TYN L+N  CKMGR+     +L 
Sbjct: 267 IHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR 326

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           +I+ +  TPD VT+TSLI  L  E R  EA  LF ++ + G  LD   Y  LI  L +TG
Sbjct: 327 KIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTG 386

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSAL 267
               A ++++ M +        C PD +T ST+IDGL K    G+A  +  S  A   A 
Sbjct: 387 KIPQASSVYKTMTSHG------CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAP 440

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N++ +                LI GLCK  K+  A E+   + +A   P+ +TYNILI G
Sbjct: 441 NEVVYS--------------ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDG 486

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G ++  + +      F  +   G  PD+YTYNILI+ FCK G   +   +F  +  
Sbjct: 487 LCKSGDVEAARAF------FDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSS 540

Query: 388 SCFTPDAVTFTSLIKIL 404
           S  + + VT+ +LI  L
Sbjct: 541 SRCSANVVTYGALISGL 557



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 164/369 (44%), Gaps = 68/369 (18%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           +  ++L +++   G  P   TYN L+N  CKMGR+     +L +I+ +  TPD VT+TSL
Sbjct: 3   EEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 62

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           I  L  E R  EA  LF ++ + G  LD   Y  LI  L +TG    A ++++ M +   
Sbjct: 63  IDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG- 121

Query: 227 EFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL 284
                C PD +T ST+IDGL K    G+A  +  S  A   A N++  Y  L+   C   
Sbjct: 122 -----CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEV-VYSALIHGLCKAR 175

Query: 285 NFLC----------------------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
              C                      LIDGLCK   ++ AR  F  +  AG  P+V TYN
Sbjct: 176 KMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYN 235

Query: 323 ILIRGLCNDGQMDETKH------------------------------YETVFLLFKRLNS 352
           ILI G C  G  D   H                               E    L +++ +
Sbjct: 236 ILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITA 295

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL-------E 405
            G  P + TYN L+N  CK+GR+     +  +I+ +  TPD VT+TSLI  L       E
Sbjct: 296 NGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFE 355

Query: 406 INSFFRQVA 414
               F+++A
Sbjct: 356 AYKLFKEMA 364



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 154/380 (40%), Gaps = 71/380 (18%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P    ++ L   L K +  D  L +  ++      PD  TYN+LI+  CK G 
Sbjct: 152 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGD 211

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLC----------------------------- 171
           V         +L +   PD  T+  LI   C                             
Sbjct: 212 VEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYT 271

Query: 172 -------AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
                     +I EA AL  K+   GC   + TYN L+NGLC+ G    A++L  ++ + 
Sbjct: 272 AIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD- 330

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGS-ANFLGFSCMA---------SFSAL------- 267
           NG     C PD +TY+++IDGL KE  S   +  F  MA          ++AL       
Sbjct: 331 NG-----CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQT 385

Query: 268 ----NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
                  + Y  +    C+   +    +IDGL K  ++  A  +F+S+   GL PN V Y
Sbjct: 386 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVY 445

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           + LI GLC   +MD          +  ++      PD  TYNILI+  CK G V +    
Sbjct: 446 SALIHGLCKARKMD------CALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAF 499

Query: 382 FGRILPSCFTPDAVTFTSLI 401
           F  +L +   PD  T+  LI
Sbjct: 500 FDEMLEAGCKPDVYTYNILI 519



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 145/314 (46%), Gaps = 23/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V + + +   L+K       + +FK +   GL P+   Y+ LI+  CK  ++     +
Sbjct: 124 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 183

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++ ++  TPD +T+  LI  LC    +  A A F ++   GC+ DV+TYN LI+G C+
Sbjct: 184 LAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCK 243

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+T  A +   +    NG     C  D  TY+ I+D L K       +    M   +A 
Sbjct: 244 AGNTDAASHSLAQETTING-----CTIDIHTYTAIVDWLAKNKKIEEAVAL--MEKITAN 296

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                  P +        +  L++GLCK+ +L+ A +L + +   G  P+VVTY  LI  
Sbjct: 297 G----CTPTIA------TYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI-- 344

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
              DG   E + +E  + LFK +   GL  D   Y  LI    + G++     ++  +  
Sbjct: 345 ---DGLGKEKRSFE-AYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTS 400

Query: 388 SCFTPDAVTFTSLI 401
               PD VT +++I
Sbjct: 401 HGCVPDVVTLSTMI 414



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 134/294 (45%), Gaps = 23/294 (7%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
           S++K +   G  PD  T + +I+   K GR+     +   +      P+ V +++LI  L
Sbjct: 112 SVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 171

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C   ++  A  +  +++   C  D  TYN LI+GLC++G    A   F+EM         
Sbjct: 172 CKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAG----- 226

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
            C+PD  TY+ +I G CK AG+ +    S +A  + +N                 +  ++
Sbjct: 227 -CKPDVYTYNILISGFCK-AGNTDAASHS-LAQETTINGCTIDIH---------TYTAIV 274

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           D L K  K++ A  L + +   G  P + TYN L+ GLC  G+++E         L +++
Sbjct: 275 DWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEE------AIDLLRKI 328

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              G  PD+ TY  LI+   K  R    + +F  +       D V +T+LI+ L
Sbjct: 329 VDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIREL 382



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 6/161 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V + + +   L+K       + +FK +   GL P+   Y+ LI+  CK  ++     +
Sbjct: 405 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 464

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++ ++  TPD +T+  LI  LC    +  A A F ++   GC+ DV+TYN LI+G C+
Sbjct: 465 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCK 524

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G+T  A  +F++M++        C  + +TY  +I GLCK
Sbjct: 525 AGNTDAACGVFDDMSSSR------CSANVVTYGALISGLCK 559



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 57/141 (40%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P    ++ L   L K +  D  L +  ++      PD  TYNILI+  CK G 
Sbjct: 433 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGD 492

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V         +L +   PD  T+  LI   C       A  +F  +    C  +V TY  
Sbjct: 493 VEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGA 552

Query: 201 LINGLCRTGHTIVALNLFEEM 221
           LI+GLC+      A   F+ M
Sbjct: 553 LISGLCKRRQLTKASLYFQHM 573



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 75  CVFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           C  + +  M+ +   P   ++NIL   L K+   +   + F  +   G  PD YTYNILI
Sbjct: 460 CALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILI 519

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           + FCK G       V   +  S  + + VT+ +LI  LC   ++ +A+  F  ++  G
Sbjct: 520 SGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 190/416 (45%), Gaps = 74/416 (17%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNEALCVFDYMLN-MRPSRPPVTSFNILFGCLAKTK-- 104
            LE+ +  R +S       S+  ++AL +FD ML   RP+   V +FN L   +++ +  
Sbjct: 16  ELERVIAGRARSG------SLGLDDALKLFDEMLTYARPA--SVRTFNRLLTVVSRARCS 67

Query: 105 -HYDTVLSLFKRLNL---TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT-PD 159
              + V+SLF R+       + P   TY ILI CFC+MGR+ HGF   G IL++ ++  +
Sbjct: 68  SASELVVSLFNRMIRECSVKVAPSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNN 127

Query: 160 AVTFTSLIKDLCAESRIMEAAA-LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
            V F  L+K LC   R+ EA   L  ++  FGC L+V +YN L+ GLC       AL L 
Sbjct: 128 TVIFGQLLKGLCDAKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELM 187

Query: 219 EEMA-NGNGEFGVVCEPDAITYSTIIDGLCK----------------EAGSANFLGFSCM 261
             MA +G+G       P+ +TY+T+IDGLCK                +    N   ++C+
Sbjct: 188 HMMADDGDGSH----TPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCL 243

Query: 262 -------ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                    +  + +M        +Q  C+ +  L+D LCK  +   AR +F SL R G+
Sbjct: 244 IHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGI 303

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHY-----------------------------ETVFL 345
            P+V  Y IL+ G   +G + E   +                             +    
Sbjct: 304 KPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMH 363

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +F ++    L P +  Y  LI+  CK+GRV    + F +++    TPD   F+SL+
Sbjct: 364 IFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLV 419



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 136/339 (40%), Gaps = 47/339 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    FNI+F   AK    D  + +F ++    L P    Y  LI+  CK+GRV    + 
Sbjct: 340 PDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLK 399

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++    TPD   F+SL+  LC   +  +A  LF ++   G  L+   +N L+  LCR
Sbjct: 400 FNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCR 459

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  + A  L + M        V   PD I+Y+T++DG C                    
Sbjct: 460 EGRVMEAQRLIDLM------LRVDVRPDVISYNTLVDGHC------------LTGRIDEA 501

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K+      + ++     +  L+ G CK  ++  A  LF+ +   GL P VVTYN ++ G
Sbjct: 502 AKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHG 561

Query: 328 LCNDGQMDETKH-----------------------------YETVFLLFKRLNSTGLFPD 358
           L   G+  E K                               +  F +F+ L S  L  D
Sbjct: 562 LFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLD 621

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           ++T NI+I    K GR      +F  I      PD  T+
Sbjct: 622 IFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETY 660



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 163/377 (43%), Gaps = 65/377 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  VF +M++ +  RP   ++  L      T  +  V+ + + ++  GL PD   Y +
Sbjct: 219 DRAKGVFQHMID-KGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAV 277

Query: 131 LINCFCKMGRVS-------------------------HGFVVLGRI----------LRSC 155
           L++  CK GR +                         HG+   G +          +R+ 
Sbjct: 278 LLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNG 337

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
            +PD   F  +      ++ I EA  +F K+R       V  Y  LI+ LC+ G    A+
Sbjct: 338 VSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAV 397

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMAFY 273
             F +M N     GV   PD   +S+++ GLC   +   A  L F  +     LN  A +
Sbjct: 398 LKFNQMINE----GVT--PDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLN--AAF 449

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
           F ++    +C         LC+  ++  A+ L   + R  + P+V++YN L+ G C  G+
Sbjct: 450 FNIL----MC--------NLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGR 497

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           +DE      V +      S GL PD +TYN L++ +CK  R+   + +F  +L    TP 
Sbjct: 498 IDEAAKLLDVMV------SIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPG 551

Query: 394 AVTFTSLIK-ILEINSF 409
            VT+ +++  + +I  F
Sbjct: 552 VVTYNTILHGLFQIGRF 568



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 153/334 (45%), Gaps = 25/334 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ M+N     P +  F+ L   L     ++    LF  +   G+  +   +NI
Sbjct: 394 DDAVLKFNQMIN-EGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNI 452

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+   C+ GRV     ++  +LR    PD +++ +L+   C   RI EAA L   +   G
Sbjct: 453 LMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIG 512

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D FTYNTL++G C+      A +LF EM            P  +TY+TI+ GL +  
Sbjct: 513 LKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKG------LTPGVVTYNTILHGLFQ-- 564

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                +G  C A    LN +       R +C    +  +++GLC+ + +  A ++FQSL 
Sbjct: 565 -----IGRFCEAKELYLNMINN-----RRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLC 614

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
              L  ++ T NI+I  L   G+       E    LF  +++ GL PD+ TY ++     
Sbjct: 615 SKDLQLDIFTINIMIGALLKGGRK------EDAMDLFATISAYGLVPDVETYRLIAENLI 668

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K G +     +F  +  +   P++    +L++ L
Sbjct: 669 KEGSLEELDELFSAMEENGTAPNSRMLNALVRWL 702



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 135/343 (39%), Gaps = 61/343 (17%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + D ML +   RP V S+N L      T   D    L   +   GL PD +TYN L
Sbjct: 465 EAQRLIDLMLRV-DVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTL 523

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ +CK  R+   + +   +L    TP  VT+ +++  L    R  EA  L+  +     
Sbjct: 524 LHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRR 583

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + D++TY  ++NGLCR      A  +F+ +          C  D                
Sbjct: 584 KCDIYTYTIILNGLCRNNFVDEAFKMFQSL----------CSKD---------------- 617

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                    +++    +N   +I  L K  + + A +LF ++  
Sbjct: 618 -------------------------LQLDIFTINI--MIGALLKGGRKEDAMDLFATISA 650

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL+P+V TY ++   L  +G ++E         LF  +   G  P+    N L+     
Sbjct: 651 YGLVPDVETYRLIAENLIKEGSLEELDE------LFSAMEENGTAPNSRMLNALVRWLLH 704

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
            G +    V   ++    F+ +A T + LI I    + ++Q+A
Sbjct: 705 RGDIGRAGVYLSKLDEKNFSLEASTTSMLISIYS-RAEYQQLA 746



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 17/132 (12%)

Query: 283 CLNFLCLIDGLCKISKLKI--ARELFQSLPRAGLMPNVVTYNILI----RGLCNDGQMDE 336
           CL    +I G  +   L +  A +LF  +       +V T+N L+    R  C+      
Sbjct: 14  CLELERVIAGRARSGSLGLDDALKLFDEMLTYARPASVRTFNRLLTVVSRARCSSAS--- 70

Query: 337 TKHYETVFLLFKRLN---STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT-P 392
               E V  LF R+    S  + P   TY ILI CFC++GR+  GF  FG IL + ++  
Sbjct: 71  ----ELVVSLFNRMIRECSVKVAPSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLN 126

Query: 393 DAVTFTSLIKIL 404
           + V F  L+K L
Sbjct: 127 NTVIFGQLLKGL 138


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 159/312 (50%), Gaps = 37/312 (11%)

Query: 116 LNLTGLFPDRYTYNILINCFCK--MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           ++L+ + PD YT  ILINCFC          F VLG + +    P+ VTF++L+  L ++
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSK 60

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
           ++I++A  LF ++   G E DV TY+T+INGLC+ G T +A+ L ++M          C+
Sbjct: 61  AKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKG------CK 114

Query: 234 PDAITYSTIIDGLCKEAGSANFLGF-----------------SCMASFSALNK----MAF 272
           P+ + YSTIID LCK+      + F                 S +  F  L +     + 
Sbjct: 115 PNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSL 174

Query: 273 YFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
           +  +V    +   + F  L+DGL K   +  A+ +F+++   G+ PNV TYN L+ G C+
Sbjct: 175 FKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCS 234

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
             QMDE +       LF  +   G  P + +YNILI   CK GR+     +   +     
Sbjct: 235 QSQMDEAQK------LFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKAL 288

Query: 391 TPDAVTFTSLIK 402
           TPD VT+++L+K
Sbjct: 289 TPDTVTYSTLMK 300



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 155/330 (46%), Gaps = 25/330 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  +F  M+  R   P   +FNIL   L+K         +F+ +   G+ P+  TYN 
Sbjct: 169 NEATSLFKQMVE-RNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNA 227

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +C   ++     +   ++R    P   ++  LIK  C   RI EA  L  ++    
Sbjct: 228 LMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKA 287

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  TY+TL+ G C+ G    A  L EEM +    +G++  PD +TYS ++DGLCK+ 
Sbjct: 288 LTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRS----YGLL--PDLMTYSIVLDGLCKQG 341

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                       +F  L  M       +++     +  LI G+C   KL+ ARELF +L 
Sbjct: 342 --------HLDEAFELLKAMQES----KIEPNIFIYTILIQGMCNFGKLEAARELFSNLF 389

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+VVTY ++I GL   G  +E         LF+ +   G  P+  TYN++I  F 
Sbjct: 390 VKGIQPDVVTYTVMISGLLKGGLSNEACE------LFRDMAVHGCLPNSCTYNVIIQGFL 443

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           + G  S+   +   ++   F+ D+ TF  L
Sbjct: 444 RNGDTSNAGRLIEEMVGRGFSADSSTFQML 473



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 142/315 (45%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  ++ +   L K K     +     +   G+ P+  TY+ +++ FC +GR +    
Sbjct: 114 KPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATS 173

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  +++     PD VTF  L+  L  E  I+EA  +F  +   G E +V TYN L++G C
Sbjct: 174 LFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYC 233

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A  LF  M          C P   +Y+ +I G CK        G     S  A
Sbjct: 234 SQSQMDEAQKLFNIMVRKG------CAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKA 287

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L                + +  L+ G C+  + + A++L + +   GL+P+++TY+I++ 
Sbjct: 288 LTPDT------------VTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLD 335

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G +DE       F L K +  + + P+++ Y ILI   C  G++ +   +F  + 
Sbjct: 336 GLCKQGHLDE------AFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLF 389

Query: 387 PSCFTPDAVTFTSLI 401
                PD VT+T +I
Sbjct: 390 VKGIQPDVVTYTVMI 404



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 157/331 (47%), Gaps = 25/331 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+     M+N R   P V +++ +          +   SLFK++    + PD  T+NIL
Sbjct: 135 EAMEFLSEMVN-RGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNIL 193

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++   K G +     V   ++     P+  T+ +L+   C++S++ EA  LF  +   GC
Sbjct: 194 VDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGC 253

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              V +YN LI G C++G    A  L  EM++          PD +TYST++ G C++  
Sbjct: 254 APSVRSYNILIKGHCKSGRIDEAKGLLAEMSHK------ALTPDTVTYSTLMKGFCQDGR 307

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +        +   L +M  Y  L  +    + +  ++DGLCK   L  A EL +++  
Sbjct: 308 PQD--------AQKLLEEMRSYGLLPDL----MTYSIVLDGLCKQGHLDEAFELLKAMQE 355

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           + + PN+  Y ILI+G+CN G+++  +       LF  L   G+ PD+ TY ++I+   K
Sbjct: 356 SKIEPNIFIYTILIQGMCNFGKLEAARE------LFSNLFVKGIQPDVVTYTVMISGLLK 409

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            G  +    +F  +      P++ T+  +I+
Sbjct: 410 GGLSNEACELFRDMAVHGCLPNSCTYNVIIQ 440



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 311 RAGLMPNVVTYNILIRGLCNDGQM-DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
           + GL PN VT++ L+ GL +  ++ D  K       LF  +   G  PD+ TY+ +IN  
Sbjct: 40  KLGLQPNHVTFSTLLNGLSSKAKIIDAVK-------LFDEMVKMGYEPDVITYSTIINGL 92

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           CK+G  +    +  ++      P+ V ++++I  L
Sbjct: 93  CKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSL 127


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 153/321 (47%), Gaps = 24/321 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R + P V S++++     + +    VL L + L   GL P++YTYN +I+  CK GR
Sbjct: 278 MEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGR 337

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V     VL  +      PD V +T+LI        +     LF +++      D  TY +
Sbjct: 338 VVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTS 397

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           +I+GLC+ G  + A  LF EM +         +PD +TY+ +IDG CK AG         
Sbjct: 398 MIHGLCQAGKVVEARKLFSEMLSKG------LKPDEVTYTALIDGYCK-AGEMK------ 444

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             +FS  N+M        V    + +  L+DGLCK  ++ IA EL   +   GL PNV T
Sbjct: 445 -EAFSLHNQMVEKGLTPNV----VTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCT 499

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN LI GLC  G +      E    L + ++  G FPD  TY  +++ +CK+G ++    
Sbjct: 500 YNALINGLCKVGNI------EQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHE 553

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +   +L     P  VTF  L+
Sbjct: 554 LLRIMLDKGLQPTIVTFNVLM 574



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 143/298 (47%), Gaps = 36/298 (12%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
            LF  +   GL PD  TY  LI+ +CK G +   F +  +++    TP+ VT+T+L+  L
Sbjct: 413 KLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGL 472

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C    +  A  L  ++   G + +V TYN LINGLC+ G+   A+ L EEM +  G F  
Sbjct: 473 CKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEM-DLAGFF-- 529

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV------QCLCL 284
              PD ITY+TI+D  CK                  + +MA    L+R+      Q   +
Sbjct: 530 ---PDTITYTTIMDAYCK------------------MGEMAKAHELLRIMLDKGLQPTIV 568

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            F  L++G C    L+    L + +   G+MPN  T+N L++  C    M  T       
Sbjct: 569 TFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRAT------I 622

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            ++K +++ G+ PD  TYNILI   CK   +   + +   ++   F+  A ++ SLIK
Sbjct: 623 EIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIK 680



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 133/298 (44%), Gaps = 38/298 (12%)

Query: 116 LNLTGLFPDRYTYNILIN---CFCKMGRVSHGFVVLG---RILRS------CFTPDAVTF 163
           L    LF     Y +L++   C   + R+S+ F  +    R+ R       C+  + V++
Sbjct: 198 LEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFREYSEVGVCW--NTVSY 255

Query: 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
             ++  LC   ++ EA +L  ++   G   DV +Y+ +++G C+       L L EE+  
Sbjct: 256 NIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQR 315

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
                    +P+  TY++II  LCK                  + K    FP   V    
Sbjct: 316 KG------LKPNQYTYNSIISFLCKTGRVVE------AEQVLRVMKNQRIFPDNVV---- 359

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             +  LI G  K   + +  +LF  + R  ++P+ VTY  +I GLC  G++ E +     
Sbjct: 360 --YTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARK---- 413

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             LF  + S GL PD  TY  LI+ +CK G +   F +  +++    TP+ VT+T+L+
Sbjct: 414 --LFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALV 469



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 120/286 (41%), Gaps = 44/286 (15%)

Query: 61  GEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG 120
           GE DI     NE L    + ++ +  +P V ++N L   L K  + +  + L + ++L G
Sbjct: 476 GEVDIA----NELL----HEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAG 527

Query: 121 LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180
            FPD  TY  +++ +CKMG ++    +L  +L     P  VTF  L+   C    + +  
Sbjct: 528 FFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGE 587

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
            L   +   G   +  T+N+L+   C   +    + +++ M       GVV  PD  TY+
Sbjct: 588 RLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQ----GVV--PDTNTYN 641

Query: 241 TIIDGLCKEAG--SANFL-------GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
            +I G CK      A FL       GFS  A+                     ++  LI 
Sbjct: 642 ILIKGHCKARNMKEAWFLHKEMVEKGFSLTAA---------------------SYNSLIK 680

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           G  K  K + AR+LF+ +   G +     Y+I +     +G  + T
Sbjct: 681 GFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENT 726



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 131/322 (40%), Gaps = 27/322 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  + + M+  +   P V ++  L   L K    D    L   ++  GL P+  TYN 
Sbjct: 444 KEAFSLHNQMVE-KGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNA 502

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK+G +     ++  +  + F PD +T+T+++   C    + +A  L   +   G
Sbjct: 503 LINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKG 562

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-KE 249
            +  + T+N L+NG C +G       L + M +     G++  P+A T+++++   C + 
Sbjct: 563 LQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDK----GIM--PNATTFNSLMKQYCIRN 616

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              A    +  M +   +     Y               LI G CK   +K A  L + +
Sbjct: 617 NMRATIEIYKGMHAQGVVPDTNTYN-------------ILIKGHCKARNMKEAWFLHKEM 663

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G      +YN LI+G     + +E +       LF+ + + G   +   Y+I ++  
Sbjct: 664 VEKGFSLTAASYNSLIKGFYKRKKFEEARK------LFEEMRTHGFIAEKEIYDIFVDVN 717

Query: 370 CKIGRVSSGFVIFGRILPSCFT 391
            + G   +   +    +  C  
Sbjct: 718 YEEGNWENTLELCDEAIEKCLV 739



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/106 (21%), Positives = 52/106 (49%), Gaps = 6/106 (5%)

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           ++ A  +F+     G+  N V+YNI++  LC  G++ E         L  ++   G  PD
Sbjct: 233 IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHS------LLIQMEFRGNVPD 286

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + +Y+++++ +C++ ++     +   +      P+  T+ S+I  L
Sbjct: 287 VVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFL 332


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 178/370 (48%), Gaps = 40/370 (10%)

Query: 42  TVKDRA-SLEQFLKERCKSSGEGDITSITPNEALCVFDYML-NMRPSRPPVTSFNILFGC 99
             +DR   LE+ + +R +S       S+  ++AL +FD +L + RP+   V +FN L   
Sbjct: 7   AARDRCLELERVIADRARSG------SLGIDDALKLFDELLPHARPA--SVRAFNHLLNV 58

Query: 100 LAKTKHYDT---VLSLFKRLNLT---GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           +A+ +   T    +SLF R+       + PD  TY+IL  CFC++GR+ HGF   G IL+
Sbjct: 59  VARARCSSTSELAVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILK 118

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAA-LFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           + +  + V    L+  LC   R+ EA   L  ++  FGC  +V + NTL+ GLC      
Sbjct: 119 TGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVE 178

Query: 213 VALNLFEEMA-NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
            AL L   MA +G G     C P+ +TY+TIIDGLCK        G         L  M 
Sbjct: 179 EALELLHTMAEDGGGN----CTPNVVTYNTIIDGLCKAQAVDRAEG--------VLQHMI 226

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
                  V+   + +  +IDGLCK   +  A  + Q +   G+ P+VVTYN +I GLC  
Sbjct: 227 DK----GVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKA 282

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
             +D  +       + + +   G+ PD+ TYN +I+  CK   V     +   ++     
Sbjct: 283 QAVDRAEG------VLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVK 336

Query: 392 PDAVTFTSLI 401
           PD  T+  LI
Sbjct: 337 PDIQTYNCLI 346



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 150/315 (47%), Gaps = 30/315 (9%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNI+    AK    D  + +F R++  GL PD  TY ILI+  CK+GRV    +   +++
Sbjct: 447 FNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMI 506

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
               TP++V F SL+  LC   R  +A  LF ++   G   +V  +NT++  LC  G  +
Sbjct: 507 NDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVM 566

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC---KEAGSANFLGFSCMASFSALNK 269
           VA  L + M        V   P+ I+Y+T+I G C   +   +A  L    M S      
Sbjct: 567 VAQRLIDSMER------VGVRPNVISYNTLIGGHCLAGRTDEAAQLL--DVMVSVGLKPD 618

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           +  Y  L+R             G CK  ++  A  LF+ + R G+ P  VTY+ +++GL 
Sbjct: 619 LISYDTLLR-------------GYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLF 665

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           +  +  E K       L+  +  +G   D+YTYNI++N  CK   V   F IF  +    
Sbjct: 666 HTRRFSEAKE------LYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKD 719

Query: 390 FTPDAVTFTSLIKIL 404
             P+ +TFT +I +L
Sbjct: 720 LRPNIITFTIMIDVL 734



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 143/332 (43%), Gaps = 27/332 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  V  +M++ +  +  V +++ +   L K +  D    + + +   G+ PD  TYN 
Sbjct: 216 DRAEGVLQHMID-KGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNT 274

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK   V     VL  ++     PD VT+ ++I  LC    +  A  +   +    
Sbjct: 275 IIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKD 334

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D+ TYN LI+G   TG     +   EEM      +    +PD +TYS ++D LCK  
Sbjct: 335 VKPDIQTYNCLIHGYLSTGEWKEVVRRLEEM------YARGLDPDVVTYSLLLDYLCKNG 388

Query: 251 GSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                   F CM        +  Y               L+ G      +    +L   +
Sbjct: 389 KCTEARKIFYCMIRKGIKPNVTIYG-------------ILLHGYAARGAIADLTDLLDLM 435

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G+ PN   +NI++        +DE  H      +F R++  GL PD+ TY ILI+  
Sbjct: 436 VANGISPNNYIFNIVLCAYAKKAMIDEAMH------IFSRMSQHGLSPDVVTYGILIDAL 489

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK+GRV    + F +++    TP++V F SL+
Sbjct: 490 CKLGRVDDAVLKFNQMINDGVTPNSVVFNSLV 521



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 149/344 (43%), Gaps = 40/344 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYTYNILINCFCKMGRVSHG 144
           P V S N L   L   K  +  L L   +   G     P+  TYN +I+  CK   V   
Sbjct: 159 PNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRA 218

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             VL  ++      D VT++++I  LC    +  A  +   +   G + DV TYNT+I+G
Sbjct: 219 EGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDG 278

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG------- 257
           LC+      A  + + M +     GV  +PD +TY+TIIDGLCK        G       
Sbjct: 279 LCKAQAVDRAEGVLQHMIDK----GV--KPDVVTYNTIIDGLCKAQAVDRADGVLQHMID 332

Query: 258 ---------FSCMASFSALNKMAFYFPLVRVQCL--------CLNFLCLIDGLCKISKLK 300
                    ++C+     L+   +   + R++ +         + +  L+D LCK  K  
Sbjct: 333 KDVKPDIQTYNCLI-HGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCT 391

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            AR++F  + R G+ PNV  Y IL+ G    G + +         L   + + G+ P+ Y
Sbjct: 392 EARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTD------LLDLMVANGISPNNY 445

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +NI++  + K   +     IF R+     +PD VT+  LI  L
Sbjct: 446 IFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDAL 489



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 59/317 (18%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V S+N L G        D    L   +   GL PD  +Y+ L+  +CK GR+ + + 
Sbjct: 581 RPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYC 640

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +LR   TP AVT++++++ L    R  EA  L+  +   G + D++TYN ++NGLC
Sbjct: 641 LFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLC 700

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +T     A  +F+ + + +        P+ IT++ +ID L K                  
Sbjct: 701 KTNCVDEAFKIFQSLCSKD------LRPNIITFTIMIDVLFKGG---------------- 738

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                                          + K A +LF S+P  GL+PNVVTY I+++
Sbjct: 739 -------------------------------RKKDAMDLFASIPSHGLVPNVVTYCIMMK 767

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            +  +G +DE   ++ +FL  ++   +G  PD    N +I      G +        +I 
Sbjct: 768 NIIQEGLLDE---FDNLFLAMEK---SGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKID 821

Query: 387 PSCFTPDAVTFTSLIKI 403
              F+ +A T + LI +
Sbjct: 822 EMNFSLEASTTSLLISL 838



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 138/331 (41%), Gaps = 25/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  V  +M++ +  +P V ++N +   L K +  D    + + +   G+ PD  TYN 
Sbjct: 251 DRAEGVLQHMID-KGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNT 309

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK   V     VL  ++     PD  T+  LI    +     E      ++   G
Sbjct: 310 IIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARG 369

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV TY+ L++ LC+ G    A  +F  M           +P+   Y  ++ G     
Sbjct: 370 LDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKG------IKPNVTIYGILLHGYAARG 423

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             A+      +   + ++   + F +V    LC           K + +  A  +F  + 
Sbjct: 424 AIADLTDLLDLMVANGISPNNYIFNIV----LC--------AYAKKAMIDEAMHIFSRMS 471

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           + GL P+VVTY ILI  LC  G++D+        L F ++ + G+ P+   +N L+   C
Sbjct: 472 QHGLSPDVVTYGILIDALCKLGRVDDA------VLKFNQMINDGVTPNSVVFNSLVYGLC 525

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + R      +F  +      P+ V F +++
Sbjct: 526 TVDRWEKAEELFFEMWDQGVRPNVVFFNTIM 556


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 109/367 (29%), Positives = 174/367 (47%), Gaps = 49/367 (13%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           +  +  ++A+ +F  M+  RP  P +  F+ L   +AK   +D V+SL +++   G+  +
Sbjct: 51  LQDLKLDDAIGLFGDMVKSRPF-PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHN 109

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            YTY+I IN FC+  ++S    +LG++++  + P  VT  SL+   C  +RI EA AL  
Sbjct: 110 LYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVD 169

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           ++   G + D  T+ TL++GL +      A+ L E M          C+PD +TY  +I+
Sbjct: 170 QMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG------CQPDLVTYGAVIN 223

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           GLCK  G  +        + + LNKM       +++   + +  +IDGLCK   +  A +
Sbjct: 224 GLCKR-GEPDL-------ALNLLNKM----EKGKIEADVVIYNTIIDGLCKYKHMDDAFD 271

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQ------------------------------M 334
           LF  +   G+ P+V TYN LI  LCN G+                              +
Sbjct: 272 LFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFV 331

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
            E K  E   L  + + S   FPD+  YN LI  FCK  RV  G  +F  +       + 
Sbjct: 332 KEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 391

Query: 395 VTFTSLI 401
           VT+T+LI
Sbjct: 392 VTYTTLI 398



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 158/365 (43%), Gaps = 57/365 (15%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + D M+ M   +P   +F  L   L +       ++L +R+ + G  PD  TY  
Sbjct: 162 SEAVALVDQMVEM-GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGA 220

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK G       +L ++ +     D V + ++I  LC    + +A  LF K+   G
Sbjct: 221 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG 280

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV------------------- 231
            + DVFTYN LI+ LC  G    A  L  +M   N    +V                   
Sbjct: 281 IKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAE 340

Query: 232 -----------CEPDAITYSTIIDGLCK----EAGSANFLGFSCMASFSALNKMAFYFPL 276
                      C PD + Y+T+I G CK    E G         M  F  +++       
Sbjct: 341 KLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEG---------MEVFREMSQRGLVGNT 391

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
           V        +  LI G  +      A+ +F+ +   G+ P+++TYNIL+ GLCN+G +  
Sbjct: 392 V-------TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNV-- 442

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
               ET  ++F+ +    +  D+ TY  +I   CK G+V  G+ +F  +      P+ VT
Sbjct: 443 ----ETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVT 498

Query: 397 FTSLI 401
           +T+++
Sbjct: 499 YTTMM 503



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 30/336 (8%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P+ AL + + M   +     V  +N +   L K KH D    LF ++   G+ PD +TYN
Sbjct: 231 PDLALNLLNKMEKGKI-EADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYN 289

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RV 188
            LI+C C  GR S    +L  +L     PD V F +LI     E +++EA  L+ ++ + 
Sbjct: 290 PLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKS 349

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL-- 246
             C  DV  YNTLI G C+       + +F EM+    + G+V   + +TY+T+I G   
Sbjct: 350 KHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMS----QRGLV--GNTVTYTTLIHGFFQ 403

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            ++  +A  + F  M S               V    + +  L+DGLC    ++ A  +F
Sbjct: 404 ARDCDNAQMV-FKQMVSDG-------------VHPDIMTYNILLDGLCNNGNVETALVVF 449

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           + + +  +  ++VTY  +I  LC  G++++       + LF  L+  G+ P++ TY  ++
Sbjct: 450 EYMQKRDMKLDIVTYTTMIEALCKAGKVEDG------WDLFCSLSLKGVKPNVVTYTTMM 503

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + FC+ G       +F  +      P++ T+ +LI+
Sbjct: 504 SGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIR 539



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 123/309 (39%), Gaps = 60/309 (19%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++D M+  +   P V ++N L     K K  +  + +F+ ++  GL  +  TY  L
Sbjct: 338 EAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTL 397

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ F +     +  +V  +++     PD +T+  L+  LC    +  A  +F  ++    
Sbjct: 398 IHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDM 457

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           +LD+ TY T+I  LC+ G      +LF  ++      GV  +P+ +TY+T++ G C++  
Sbjct: 458 KLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK----GV--KPNVVTYTTMMSGFCRKGL 511

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                             A  LF  +  
Sbjct: 512 KEE-----------------------------------------------ADALFVEMKE 524

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +PN  TYN LIR    DG  DE    E    L K + S G   D  T+ ++ N    
Sbjct: 525 DGPLPNSGTYNTLIRARLRDG--DEAASAE----LIKEMRSCGFAGDASTFGLVTNMLHD 578

Query: 372 IGRVSSGFV 380
            GR+   F+
Sbjct: 579 -GRLDKSFL 586


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 166/332 (50%), Gaps = 30/332 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL V+ Y +++ P+   + + N++   L K   +DT+  ++  +   G  P+  TY  
Sbjct: 143 EEALWVY-YKMDVLPA---MQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGT 198

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C+ G     F +   ++     P  V +T LI+ LC ESRI EA ++F  +R  G
Sbjct: 199 LIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSG 258

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +++TYNT+++G C+  H   AL L++EM  G+G       P+ +T+  +IDGLCK  
Sbjct: 259 MLPNLYTYNTMMDGYCKIAHVKKALELYQEML-GDGLL-----PNVVTFGILIDGLCKTD 312

Query: 251 GSANFLGFSC-MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              +   F   MASF  +  +  Y              CLIDG CK   L  A  L   +
Sbjct: 313 EMVSARKFLIDMASFGVVPNIFVYN-------------CLIDGYCKAGNLSEALSLHSEI 359

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            +  ++P+V TY+ILI+GLC   +M+E         L + +   G  P+  TYN LI+ +
Sbjct: 360 EKHEILPDVFTYSILIKGLCGVDRMEEADG------LLQEMKKKGFLPNAVTYNTLIDGY 413

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK G +     +  ++      P+ +TF++LI
Sbjct: 414 CKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 149/340 (43%), Gaps = 48/340 (14%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +FD M+  +   P V  + IL   L          S+F+ +  +G+ P+ YTYN +
Sbjct: 211 KAFRLFDEMIE-KKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM 269

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ +CK+  V     +   +L     P+ VTF  LI  LC    ++ A      +  FG 
Sbjct: 270 MDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEE-------------------------MANGNG 226
             ++F YN LI+G C+ G+   AL+L  E                         M   +G
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADG 389

Query: 227 EFGVVCE----PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
               + +    P+A+TY+T+IDG CKE      +      +   +       P +     
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIE------PNI----- 438

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
            + F  LIDG CK  K++ A  L+  +   GL+P+VV Y  LI G   DG   E      
Sbjct: 439 -ITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEA----- 492

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            F L K +   GL P+++T + LI+  CK GR+S    +F
Sbjct: 493 -FRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 137/300 (45%), Gaps = 35/300 (11%)

Query: 108 TVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167
           +V ++  RL  +   P+   + +LI  F +MG V     V  ++      P       ++
Sbjct: 111 SVFNVLSRLESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYKM---DVLPAMQACNMVL 165

Query: 168 KDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 227
             L  + R      ++  +   G   +V TY TLI+G CR G  + A  LF+EM      
Sbjct: 166 DGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKK-- 223

Query: 228 FGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN-- 285
                 P  + Y+ +I GLC E               S +++    F  +R   +  N  
Sbjct: 224 ----IFPTVVIYTILIRGLCGE---------------SRISEAESMFRTMRNSGMLPNLY 264

Query: 286 -FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  ++DG CKI+ +K A EL+Q +   GL+PNVVT+ ILI GLC   +M   +     F
Sbjct: 265 TYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARK----F 320

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           L+   + S G+ P+++ YN LI+ +CK G +S    +   I      PD  T++ LIK L
Sbjct: 321 LI--DMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGL 378


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 154/319 (48%), Gaps = 24/319 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  RP   SFN L   L K+++ D    L K +    ++PD +TY++LI+  CK GR+  
Sbjct: 252 RGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDV 311

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   + +    P+ +TFT+LI   C   RI  A   + ++   G + D+  YNTL+N
Sbjct: 312 AEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLN 371

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GLC+ G    A  L +EM        V  +PD ITY+T+IDG CKE         S M  
Sbjct: 372 GLCKVGDVNKARKLVDEMRM------VGMKPDKITYTTLIDGYCKEGDLE-----SAMEI 420

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              +N+       V        F  LI G C+  +++ A    + +  AG+ P+  TY +
Sbjct: 421 RKGMNEEGVVLDNVA-------FTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTM 473

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +I G C  G +      +  F L K +   G  P + TYN+L+N  CK G++ +  ++  
Sbjct: 474 VIDGYCKKGNV------KMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLE 527

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +L    TPD +T+  L++
Sbjct: 528 AMLNLGVTPDDITYNILLE 546



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 134/294 (45%), Gaps = 24/294 (8%)

Query: 108 TVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167
           T+ + +  +   G  P    YNILIN FCK G +    ++   I +    P  V+F +LI
Sbjct: 206 TIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLI 265

Query: 168 KDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 227
             LC    + E   L   +       DVFTY+ LI+GLC+ G   VA  LF+EM      
Sbjct: 266 NGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRG-- 323

Query: 228 FGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
                 P+ IT++ +IDG C+          S M ++  +  M     LV        + 
Sbjct: 324 ----LRPNGITFTALIDGQCRSRRID-----SAMNTYHQMLTMGVKPDLVM-------YN 367

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L++GLCK+  +  AR+L   +   G+ P+ +TY  LI G C +G +      E+   + 
Sbjct: 368 TLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDL------ESAMEIR 421

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K +N  G+  D   +  LI+ FC+ GRV         ++ +   PD  T+T +I
Sbjct: 422 KGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVI 475



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 140/299 (46%), Gaps = 28/299 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  +FD M   R  RP   +F  L     +++  D+ ++ + ++   G+ PD   YN L+
Sbjct: 312 AEQLFDEM-QQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLL 370

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK+G V+    ++  +      PD +T+T+LI   C E  +  A  +   +   G  
Sbjct: 371 NGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVV 430

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           LD   +  LI+G CR G    A     EM     E G+  +PD  TY+ +IDG CK+   
Sbjct: 431 LDNVAFTALISGFCRDGRVRDAERTLREMV----EAGM--KPDDATYTMVIDGYCKKGNV 484

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
              +GF  +       ++  + P V      + +  L++GLCK  ++K A  L +++   
Sbjct: 485 K--MGFKLLKEM----QINGHKPGV------ITYNVLMNGLCKQGQMKNANMLLEAMLNL 532

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           G+ P+ +TYNIL+ G C +G+ ++         L K  N  GL  D   Y  L++ + K
Sbjct: 533 GVTPDDITYNILLEGHCKNGKAED---------LLKLRNEKGLIVDYAYYTSLVSEYNK 582


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 179/372 (48%), Gaps = 29/372 (7%)

Query: 29  EPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRP 88
           E     T  +LR+      S     +ER +S     + SI  N+AL +F  M    P  P
Sbjct: 23  EKGNLVTALSLRICNSRAFSGRSDYRERLRSG----LHSIKFNDALTLFCDMAESHP-LP 77

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
            +  F+ L   +AK   Y+ V+SLF+ L + G+  D Y++  LI+CFC+  R+S     L
Sbjct: 78  SIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCL 137

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
           G++++  F P  VTF SL+   C  +R  EA +L  ++   G E +V  YNT+I+ LC  
Sbjct: 138 GKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEK 197

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
           G    AL++ + M     + G+   PD +TY+++I  L      +   G S     S + 
Sbjct: 198 GQVNTALDVLKHMK----KMGI--RPDVVTYNSLITRLFH----SGTWGVSARI-LSDMM 246

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
           +M    P V      + F  LID   K  +L  A++ +  + +  + PN+VTYN LI GL
Sbjct: 247 RMGIS-PDV------ITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGL 299

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C  G +DE K    V +      S G FP+  TYN LIN +CK  RV  G  I   +   
Sbjct: 300 CIHGLLDEAKKVLNVLV------SKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRD 353

Query: 389 CFTPDAVTFTSL 400
               D  T+ +L
Sbjct: 354 GVDGDTFTYNTL 365



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 157/341 (46%), Gaps = 25/341 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ + D ++ +    P V  +N +   L +    +T L + K +   G+ PD  TYN L
Sbjct: 167 EAMSLVDQIVGL-GYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSL 225

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I      G       +L  ++R   +PD +TF++LI     E +++EA   + ++     
Sbjct: 226 ITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSV 285

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             ++ TYN+LINGLC  G    A  +   + +  G F     P+A+TY+T+I+G CK   
Sbjct: 286 NPNIVTYNSLINGLCIHGLLDEAKKVLNVLVS-KGFF-----PNAVTYNTLINGYCKAKR 339

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             + +   C+ S   ++   F +              L  G C+  K   A ++   +  
Sbjct: 340 VDDGMKILCVMSRDGVDGDTFTYN------------TLYQGYCQAGKFSAAEKVLGRMVS 387

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+ P++ T+NIL+ GLC+ G++ +        +  + L  +     + TYNI+I   CK
Sbjct: 388 CGVHPDMYTFNILLDGLCDHGKIGKA------LVRLEDLQKSKTVVGIITYNIIIKGLCK 441

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
             +V   + +F  +     +PD +T+ +++  L     +R+
Sbjct: 442 ADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWRE 482



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 107/246 (43%), Gaps = 20/246 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA   ++ M+  R   P + ++N L   L      D    +   L   G FP+  TYN L
Sbjct: 272 EAKKQYNEMIQ-RSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTL 330

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN +CK  RV  G  +L  + R     D  T+ +L +  C   +   A  +  ++   G 
Sbjct: 331 INGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGV 390

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D++T+N L++GLC  G    AL   E++       G+      ITY+ II GLCK   
Sbjct: 391 HPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGI------ITYNIIIKGLCKADK 444

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +     C  +   ++      P V      + ++ ++ GL +    + A EL++ + +
Sbjct: 445 VEDAWYLFCSLALKGVS------PDV------ITYITMMIGLRRKRLWREAHELYRKMQK 492

Query: 312 A-GLMP 316
             GLMP
Sbjct: 493 EDGLMP 498



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%)

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           D  +++T+ID  C+ A  +  L  SC+     + K+ F   +V        F  L++G C
Sbjct: 113 DLYSFTTLIDCFCRCARLS--LALSCLGK---MMKLGFEPSIV-------TFGSLVNGFC 160

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
            +++   A  L   +   G  PNVV YN +I  LC  GQ++      T   + K +   G
Sbjct: 161 HVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVN------TALDVLKHMKKMG 214

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           + PD+ TYN LI      G       I   ++    +PD +TF++LI +
Sbjct: 215 IRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDV 263



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           K   A  LF  +  +  +P++V ++ L+  +       +   YE V  LF+ L   G+  
Sbjct: 59  KFNDALTLFCDMAESHPLPSIVDFSRLLIAIA------KLNKYEAVISLFRHLEMLGISH 112

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-ILEINSFFRQVA 414
           DLY++  LI+CFC+  R+S      G+++   F P  VTF SL+     +N F+  ++
Sbjct: 113 DLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMS 170


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/352 (32%), Positives = 176/352 (50%), Gaps = 35/352 (9%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           +ER +S     + SI  N+AL +F  M   RP  P +  F+ L   +AK K Y+ V+SLF
Sbjct: 42  RERLRSG----LHSIKFNDALTLFCDMAESRP-LPSIVDFSRLLVAIAKLKKYEAVISLF 96

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           + + + G+  D Y+++ LI+CFC+  R+S     LG++++  F P  VTF SL+   C  
Sbjct: 97  RHIEILGISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHV 156

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
           +RI EA +L  ++   G E +V  YNT+I+ LC       AL++   M     + G+   
Sbjct: 157 NRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHME----KMGI--R 210

Query: 234 PDAITYSTIIDGL---CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
           PD ITY+++I  L    K   SA  L        S + +M  + P V      + F  +I
Sbjct: 211 PDVITYNSLITRLFHSGKWGVSARIL--------SDMMRMGIH-PDV------ITFSAMI 255

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           D   K  +L  A++ +  + +  + PN+VTYN LI GLC  G +DE K       +   +
Sbjct: 256 DVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKK------VLNFM 309

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            S G FP+  TYN L+N +CK  RV     I   +       D  T+ +L +
Sbjct: 310 VSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQ 361



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 155/331 (46%), Gaps = 25/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ + D ++ +    P V  +N +   L + +  DT L +   +   G+ PD  TYN 
Sbjct: 160 QEAMSLVDQIVGL-GYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNS 218

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI      G+      +L  ++R    PD +TF+++I     E +++EA   + ++    
Sbjct: 219 LITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRS 278

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + ++ TYN+LINGLC  G    A  +   M +  G F     P+A+TY+T+++G CK  
Sbjct: 279 VDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVS-KGFF-----PNAVTYNTLVNGYCKSK 332

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              + +   C+ S   ++   F +              L  G C+  +   A ++   + 
Sbjct: 333 RVDDAMKILCVMSHDGVDGDTFTYN------------TLYQGYCQAGQFNAAEKVLARMV 380

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G++P++ T+N+L+ GLC  G++      E   +  + L  +     + TYNI+I   C
Sbjct: 381 SCGVLPDIYTFNMLLDGLCEHGKI------EKALVKLEDLQKSETVVGIITYNIIIKGMC 434

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K  +V   + +F  +     +PD +T+T+++
Sbjct: 435 KANKVEDAWYLFCSLALKGVSPDVITYTTMM 465



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 18/242 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V +F+ +     K          +  +    + P+  TYN LIN  C  G +     
Sbjct: 245 HPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKK 304

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL  ++   F P+AVT+ +L+   C   R+ +A  +   +   G + D FTYNTL  G C
Sbjct: 305 VLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYC 364

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A  +   M +     GV+  PD  T++ ++DGLC E G         +     
Sbjct: 365 QAGQFNAAEKVLARMVS----CGVL--PDIYTFNMLLDGLC-EHGKIE----KALVKLED 413

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L K      ++        +  +I G+CK +K++ A  LF SL   G+ P+V+TY  ++ 
Sbjct: 414 LQKSETVVGII-------TYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMI 466

Query: 327 GL 328
           GL
Sbjct: 467 GL 468



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 7/176 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  V ++M++ +   P   ++N L     K+K  D  + +   ++  G+  D +TYN 
Sbjct: 300 DEAKKVLNFMVS-KGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNT 358

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L   +C+ G+ +    VL R++     PD  TF  L+  LC   +I +A      L+   
Sbjct: 359 LYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSE 418

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
             + + TYN +I G+C+      A  LF  +A           PD ITY+T++ GL
Sbjct: 419 TVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKG------VSPDVITYTTMMIGL 468



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 69/135 (51%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++N L+    +   ++    +  R+   G+ PD YT+N+L++  C+ G++    V L  +
Sbjct: 355 TYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDL 414

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            +S      +T+  +IK +C  +++ +A  LF  L + G   DV TY T++ GL R    
Sbjct: 415 QKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLW 474

Query: 212 IVALNLFEEMANGNG 226
           + A  L+ +M   +G
Sbjct: 475 LEAHELYRKMKKDDG 489



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 18/169 (10%)

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           D  ++ST+ID  C+   S   L  SC+     + K+ F   +V        F  L++G C
Sbjct: 107 DLYSFSTLIDCFCR--CSRLSLALSCLGK---MMKLGFEPSIV-------TFGSLVNGFC 154

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
            +++++ A  L   +   G  PNVV YN +I  LC + Q+D      T   +   +   G
Sbjct: 155 HVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVD------TALDVLNHMEKMG 208

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           + PD+ TYN LI      G+      I   ++     PD +TF+++I +
Sbjct: 209 IRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDV 257



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 47/100 (47%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +FN+L   L +    +  L   + L  +       TYNI+I   CK  +V   + +
Sbjct: 386 PDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYL 445

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
              +     +PD +T+T+++  L  +   +EA  L+ K++
Sbjct: 446 FCSLALKGVSPDVITYTTMMIGLRRKRLWLEAHELYRKMK 485



 Score = 37.7 bits (86), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           ++F  L+  + K+ K +    LF+ +   G+  ++ +++ LI   C   ++         
Sbjct: 74  VDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLIDCFCRCSRL------SLA 127

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
                ++   G  P + T+  L+N FC + R+     +  +I+   + P+ V + ++I  
Sbjct: 128 LSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDS 187

Query: 404 L 404
           L
Sbjct: 188 L 188


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 162/319 (50%), Gaps = 22/319 (6%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +FN L     + K+ +   SL +++  +G+  D  TYN L++  CK GR+     +
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQL 209

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L R+  S   PD V ++S +  LC   ++++A  +  ++R    + +V TYNT+++GLC+
Sbjct: 210 LERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCK 269

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +G    AL + E+MA+ +G     C  + + YST++DGLCK       LG +   + S +
Sbjct: 270 SGKIDTALEMMEQMASSDG-----CGLNVVGYSTVVDGLCK-------LGRT-QEARSVM 316

Query: 268 NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             MA      R  C    + +  L++GLCK  K++ A E  + +   G  PN VTY  L+
Sbjct: 317 EAMA------RAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLV 370

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC+ G++ E +      +           P + TYN LI   CK GR+      F R+
Sbjct: 371 HGLCSCGRLAEAERM-VEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRM 429

Query: 386 LPSCFTPDAVTFTSLIKIL 404
                 PD V+++++++ L
Sbjct: 430 RSQGCDPDGVSYSTIVEGL 448



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 149/323 (46%), Gaps = 31/323 (9%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           S P + +++ L     K    +    L K +   GL PD   Y  ++   CK  R+    
Sbjct: 78  STPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEAL 137

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +L  ++R+   P  +TF +LI   C E  +  A +L  K+   G + DV TYNTL++GL
Sbjct: 138 ELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGL 197

Query: 206 CRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           C+ G    A  L E M A+G       C PD + YS+ + GLCK            + + 
Sbjct: 198 CKAGRLQEAEQLLERMKASG-------CAPDVVAYSSFVYGLCKSG--------KVLDAH 242

Query: 265 SALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA-GLMPNVVTY 321
             L +M  + + P V      + +  ++DGLCK  K+  A E+ + +  + G   NVV Y
Sbjct: 243 QVLEQMRDSHHDPNV------VTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGY 296

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           + ++ GLC  G+  E +       + + +   G  PD+ TY+ L+N  CK G++      
Sbjct: 297 STVVDGLCKLGRTQEARS------VMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEA 350

Query: 382 FGRILPSCFTPDAVTFTSLIKIL 404
              +      P+AVT+ SL+  L
Sbjct: 351 VREMAMEGCKPNAVTYCSLVHGL 373



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 135/293 (46%), Gaps = 30/293 (10%)

Query: 116 LNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175
           ++ TG  P+  T+N L+N F K GR      +L  +      P+ V++  L++ LC   R
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 176 IMEAAALFTKLRVFGCEL--DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
             EA  L   +   G     D+ TY+TL++G C+ G    +  L +E+ +          
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRG------LR 114

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC--LCLNFLCLID 291
           PDA+ Y+ ++  LCK A                   +     ++R  C    + F  LI 
Sbjct: 115 PDALMYTKVVASLCKSA--------------RLGEALELLEEMIRAGCCPTLITFNTLIS 160

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           G C+   L++A  L Q +  +G+  +VVTYN L+ GLC  G++ E +       L +R+ 
Sbjct: 161 GCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQ------LLERMK 214

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++G  PD+  Y+  +   CK G+V     +  ++  S   P+ VT+ +++  L
Sbjct: 215 ASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGL 267



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 161/374 (43%), Gaps = 73/374 (19%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN-------------- 133
           P   +FN L    +K         L + +    + P+  +YN L+               
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 134 -----------------------CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
                                   +CK G+V     +L  ++     PDA+ +T ++  L
Sbjct: 68  VRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASL 127

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C  +R+ EA  L  ++   GC   + T+NTLI+G CR  +  +A +L ++MA      GV
Sbjct: 128 CKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAAS----GV 183

Query: 231 VCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
             + D +TY+T++DGLCK      A  L     AS  A + +A+                
Sbjct: 184 --KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSS-------------- 227

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
            + GLCK  K+  A ++ + +  +   PNVVTYN ++ GLC  G++D      T   + +
Sbjct: 228 FVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKID------TALEMME 281

Query: 349 RLNST-GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI------ 401
           ++ S+ G   ++  Y+ +++  CK+GR      +   +  +   PD VT++SL+      
Sbjct: 282 QMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKA 341

Query: 402 -KILEINSFFRQVA 414
            KI E     R++A
Sbjct: 342 GKIEEAVEAVREMA 355



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 6/156 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  V + M      RP V +++ L   L K    +  +   + + + G  P+  TY  
Sbjct: 310 QEARSVMEAMARA-GCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCS 368

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFT-----PDAVTFTSLIKDLCAESRIMEAAALFTK 185
           L++  C  GR++    ++  +           P   T+ +LI  LC   RI +A   F +
Sbjct: 369 LVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQR 428

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           +R  GC+ D  +Y+T++ GL R+G  + A  +  E+
Sbjct: 429 MRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 33/65 (50%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P   TYN LI   CK GR+        R+      PD V+++++++ L    R ++A  +
Sbjct: 401 PSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMI 460

Query: 183 FTKLR 187
            +++R
Sbjct: 461 LSEVR 465


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 173/354 (48%), Gaps = 39/354 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL V+ Y +++ P+   + + N++   L K   +DT+  ++  +   G  P+  TY  
Sbjct: 143 EEALWVY-YKMDVLPA---MQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGT 198

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C+ G     F +   ++     P  V +T LI+ LC ESRI EA ++F  +R  G
Sbjct: 199 LIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSG 258

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +++TYNT+++G C+  H   AL L+ EM  G+G       P+ +T+  +IDGLCK  
Sbjct: 259 MLPNLYTYNTMMDGYCKIAHVKKALELYXEML-GDGLL-----PNVVTFGILIDGLCKTD 312

Query: 251 GSANFLGFSC-MASFSALNKMAFYFPLVRVQCLCLN----------------------FL 287
              +   F   MASF  +  +  Y  L+   C   N                      + 
Sbjct: 313 EMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYS 372

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI GLC + +++ A  L Q + + G +PN VTYN LI G C +G M      E    + 
Sbjct: 373 ILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNM------EKAIEVC 426

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            ++   G+ P++ T++ LI+ +CK G++ +   ++  ++     PD V +T+LI
Sbjct: 427 SQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 161/362 (44%), Gaps = 46/362 (12%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNIL-----FGCLA----KTKHYDTVLSLFKRLNLTGLF 122
           + LC  D M++ R     + SF ++     + CL     K  +    LSL   +    + 
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEIL 365

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD +TY+ILI   C + R+     +L  + +  F P+AVT+ +LI   C E  + +A  +
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
            +++   G E ++ T++TLI+G C+ G    A+ L+ EM       G++  PD + Y+ +
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIK----GLL--PDVVAYTAL 479

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           IDG  K+  +            + L+   F               CLIDGLCK  ++  A
Sbjct: 480 IDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLS------------CLIDGLCKDGRISDA 527

Query: 303 RELF-------------QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
            +LF               L R+   PN V Y  LI+GLC DG++ +   +      F  
Sbjct: 528 IKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKF------FSD 581

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409
           +  +GL PD++T  ++I    +   +    ++   IL     P++  +  L K  E + +
Sbjct: 582 MRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGY 641

Query: 410 FR 411
            +
Sbjct: 642 LK 643



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 111/288 (38%), Gaps = 34/288 (11%)

Query: 54  KERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           K+ C SS    +T+   +  + ++ +   ++P  P      + F      +  +  L LF
Sbjct: 681 KKECHSSY---LTAFGIHSFVLLWYFHTILKPPSPHEILKKVPFIGQKGDQRPNKALQLF 737

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           +++ +    PD  T  + ++    +G +  G  +   I       D     SLI      
Sbjct: 738 RQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKC 797

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA----------- 222
             I  A  LF   +    + DV T+ ++I G    G    AL LF EM            
Sbjct: 798 GEIGTARRLFDGTQ----KKDVTTWTSMIVGHALHGQAEEALQLFTEMKETNKRARKNKR 853

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
           NG  E  +V  P+ +T+  ++   C  AG    L       F ++ +     P +     
Sbjct: 854 NGEXESSLVL-PNDVTFMGVLMA-CSHAG----LVEEGKQHFRSMKEDYSLRPRIS---- 903

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
             +F C++D LC+   L  A E    +P   + PN V +  L+ G C+
Sbjct: 904 --HFGCMVDLLCRAGLLTEAYEFILKMP---VRPNAVVWRTLL-GACS 945


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 174/354 (49%), Gaps = 39/354 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL V+ Y +++ P+   + + N++   L K   +DT+  ++  +   G  P+  TY  
Sbjct: 143 EEALWVY-YKMDVLPA---MQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGT 198

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C+ G     F +   ++     P  V +T LI+ LC ESRI EA ++F  +R  G
Sbjct: 199 LIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSG 258

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +++TYNT+++G C+  H   AL L++EM  G+G       P+ +T+  +IDGLCK  
Sbjct: 259 MLPNLYTYNTMMDGYCKIAHVKKALELYQEML-GDGLL-----PNVVTFGILIDGLCKTD 312

Query: 251 GSANFLGFSC-MASFSALNKMAFYFPLVRVQCLCLN----------------------FL 287
              +   F   MASF  +  +  Y  L+   C   N                      + 
Sbjct: 313 EMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYS 372

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI GLC + +++ A  L Q + + G +PN VTYN LI G C +G M      E    + 
Sbjct: 373 ILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNM------EKAIEVC 426

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            ++   G+ P++ T++ LI+ +CK G++ +   ++  ++     PD V +T+LI
Sbjct: 427 SQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 161/362 (44%), Gaps = 46/362 (12%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNIL-----FGCL----AKTKHYDTVLSLFKRLNLTGLF 122
           + LC  D M++ R     + SF ++     + CL     K  +    LSL   +    + 
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEIL 365

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD +TY+ILI   C + R+     +L  + +  F P+AVT+ +LI   C E  + +A  +
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
            +++   G E ++ T++TLI+G C+ G    A+ L+ EM       G++  PD + Y+ +
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIK----GLL--PDVVAYTAL 479

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           IDG  K+  +            + L+   F               CLIDGLCK  ++  A
Sbjct: 480 IDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLS------------CLIDGLCKDGRISDA 527

Query: 303 RELF-------------QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
            +LF               L R+   PN V Y  LI+GLC DG++ +   +      F  
Sbjct: 528 IKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKF------FSD 581

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409
           +  +GL PD++T  ++I    +   +    ++   IL     P++  +  L K  E + +
Sbjct: 582 MRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGY 641

Query: 410 FR 411
            +
Sbjct: 642 LK 643


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/348 (31%), Positives = 172/348 (49%), Gaps = 28/348 (8%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T + A+  F+ ML M+P  P    FN L   +AK KH+ T+LSL  +++  G+ P+ YT 
Sbjct: 41  TIDGAISSFNRMLRMQPP-PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTL 99

Query: 129 NILINCFCKM--GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           +ILIN FC +  G++     +  +++   F PD VT+ +LI  LC       A  L   +
Sbjct: 100 HILINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSM 159

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
               C+ +VF YNT+I+ LC+      A NLF EM       G+   PD  TY+++I  L
Sbjct: 160 VQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTK----GI--SPDIFTYNSLIHAL 213

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
           C      N   +  +A+   LN+M     +  V    ++F  ++D LCK  K+  A ++ 
Sbjct: 214 C------NLCEWKHVATL--LNEMVDSKIMPDV----VSFNTVVDALCKEGKVTEAHDVV 261

Query: 307 QSL-PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
             +  R G MPNV++YN LI G C   ++D+  +      LF  +    L PD  TY+ L
Sbjct: 262 DKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMY------LFGEMCRQELIPDTVTYSTL 315

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           I+  C + R+     +F  ++     P+ VT+  L+  L  N +  + 
Sbjct: 316 IHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEA 363



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 160/343 (46%), Gaps = 38/343 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++N +   L K +      +LF  +   G+ PD +TYN LI+  C +    H   
Sbjct: 165 QPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVAT 224

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVFGCELDVFTYNTLINGL 205
           +L  ++ S   PD V+F +++  LC E ++ EA  +  K+ +  GC  +V +YNTLING 
Sbjct: 225 LLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGY 284

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASF 264
           C+      A+ LF EM            PD +TYST+I GLC      + +  F  M + 
Sbjct: 285 CKIQRIDKAMYLFGEMCRQE------LIPDTVTYSTLIHGLCHVERLQDAIALFHEMVAC 338

Query: 265 SALNKMAFYFPLVRVQC-----------------------LCLNFLCLIDGLCKISKLKI 301
           S +  +  Y  L+   C                       + +N +  IDG+C+  +L+ 
Sbjct: 339 SQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIA-IDGMCRAGELEA 397

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           AR+LF +L   GL P+V TY+I+I GLC  G +DE         LF+ ++  G   +   
Sbjct: 398 ARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASK------LFREMDENGCTLNGCI 451

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           YN +   F +    S    +   ++   F+ DA T T  +K+L
Sbjct: 452 YNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKML 494



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 90/206 (43%), Gaps = 14/206 (6%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  S    +   CK   EG +T     EA  V D M+      P V S+N L     K +
Sbjct: 237 DVVSFNTVVDALCK---EGKVT-----EAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQ 288

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
             D  + LF  +    L PD  TY+ LI+  C + R+     +   ++     P+ VT+ 
Sbjct: 289 RIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYR 348

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
            L+  LC    + EA AL   +     + D+   N  I+G+CR G    A +LF  +++ 
Sbjct: 349 ILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSK 408

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEA 250
                   +PD  TYS +I+GLC+  
Sbjct: 409 G------LQPDVWTYSIMINGLCRRG 428


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 180/397 (45%), Gaps = 75/397 (18%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           ++ I  ++A+ +F  M   RP  P +  F+ L   +AK   +D V+S  +++ + G+  +
Sbjct: 54  LSDIELDDAIGLFGVMAQSRPF-PSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHN 112

Query: 125 RYTYNILINCFC----------------KMG-------------------RVSHGFVVLG 149
            YTYNILINCFC                K+G                   R+S    ++ 
Sbjct: 113 LYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVD 172

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           +++   + PD VTFT+LI  L   ++  EA AL  ++   GC+ D+ TY  ++NGLC+ G
Sbjct: 173 QMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRG 232

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALN 268
            T +ALNL  +M           E + + YST+ID LCK     + L  F+ M +     
Sbjct: 233 DTDLALNLLNKMEAAK------IEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRP 286

Query: 269 KMAFYFPLVRVQCLC------------------------LNFLCLIDGLCKISKLKIARE 304
            +  Y  L  + CLC                        + F  LID   K  KL  A +
Sbjct: 287 NVITYSSL--ISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEK 344

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L++ + +  + PN+ TY+ LI G C   ++ E K       + + +      P++ TYN 
Sbjct: 345 LYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQ------MLELMIRKDCLPNVVTYNT 398

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LIN FCK  RV  G  +F  +       + VT+T+LI
Sbjct: 399 LINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLI 435



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 145/293 (49%), Gaps = 24/293 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  ++ +   L K +H D  L+LF  +   G+ P+  TY+ LI+C C  GR S    +L 
Sbjct: 253 VVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLS 312

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P+ VTF++LI     + ++++A  L+ ++     + ++FTY++LING C   
Sbjct: 313 DMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLD 372

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A  + E M   +      C P+ +TY+T+I+G CK            M  F  +++
Sbjct: 373 RLGEAKQMLELMIRKD------CLPNVVTYNTLINGFCKAKRVD-----KGMELFREMSQ 421

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                  V        +  LI G  +      A+ +F+ +   G+ PN++TYNIL+ GLC
Sbjct: 422 RGLVGNTV-------TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLC 474

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            +G++ +        ++F+ L  + + PD+YTYNI+I   CK G+   G + F
Sbjct: 475 KNGKLAKA------MVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWKMGGIYF 521



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 126/263 (47%), Gaps = 19/263 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F  M N +  RP V +++ L  CL     +     L   +    + P+  T++ 
Sbjct: 270 DDALNLFTEMEN-KGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSA 328

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F K G++     +   +++    P+  T++SLI   C   R+ EA  +   +    
Sbjct: 329 LIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKD 388

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V TYNTLING C+       + LF EM+    + G+V   + +TY+T+I G     
Sbjct: 389 CLPNVVTYNTLINGFCKAKRVDKGMELFREMS----QRGLV--GNTVTYTTLIHGF---- 438

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
               F    C  +     +M      V V    L +  L+DGLCK  KL  A  +F+ L 
Sbjct: 439 ----FQARDCDNAQMVFKQMVS----VGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQ 490

Query: 311 RAGLMPNVVTYNILIRGLCNDGQ 333
           R+ + P++ TYNI+I G+C  G+
Sbjct: 491 RSTMEPDIYTYNIMIEGMCKAGK 513



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 106/247 (42%), Gaps = 24/247 (9%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P  + F+ L+  +   ++     +   K+ + G   +++TYN LIN  CR     +AL L
Sbjct: 76  PSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALAL 135

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
             +M     + G   EPD +T +++++G C     ++      +A    + +M +    V
Sbjct: 136 LGKMM----KLGY--EPDIVTLNSLLNGFCHGNRISD-----AVALVDQMVEMGYKPDTV 184

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                   F  LI GL   +K   A  L   + + G  P++VTY  ++ GLC  G  D  
Sbjct: 185 -------TFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTD-- 235

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   L  ++ +  +  ++  Y+ +I+  CK         +F  +      P+ +T+
Sbjct: 236 ----LALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 291

Query: 398 TSLIKIL 404
           +SLI  L
Sbjct: 292 SSLISCL 298



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  VF  M+++    P + ++NIL   L K       + +F+ L  + + PD YTYNI
Sbjct: 445 DNAQMVFKQMVSV-GVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNI 503

Query: 131 LINCFCKMGRVSHG 144
           +I   CK G+   G
Sbjct: 504 MIEGMCKAGKWKMG 517


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 168/343 (48%), Gaps = 24/343 (6%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
            G +T    ++A  V   M+      P V ++N L     K       L + + +   G 
Sbjct: 355 HGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGC 414

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+ Y+Y IL++ FCK+G++   + +L  +      P+ V F  LI   C E RI EA  
Sbjct: 415 KPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 474

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +F ++   GC+ DV+T+N+LI+GLC       AL L  +M +     GVV   + +TY+T
Sbjct: 475 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE----GVVA--NTVTYNT 528

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +I+   +              +   +N+M F   L+      + +  LI GLC+  ++  
Sbjct: 529 LINAFLRRG--------EIKEARKLVNEMVFQGSLLDE----ITYNSLIKGLCRAGEVDK 576

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           AR LF+ + R GL+P+ ++ NILI GLC  G ++E   ++   +L       G  PD+ T
Sbjct: 577 ARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVL------RGSTPDIVT 630

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +N LIN  C+ GR+  G  +F ++      PD VT+ +L+  L
Sbjct: 631 FNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWL 673



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 164/383 (42%), Gaps = 60/383 (15%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VF  ML+ R   P + +F ++   L      D+ LS+ + +   G  P+   Y  LI
Sbjct: 195 AANVFYDMLS-RKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLI 253

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +   K  RV+    +L  +      PDA TF  +I  LC   RI EAA +  ++ + G  
Sbjct: 254 HSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFT 313

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG-------------------------- 226
            D  TY  L+NGLC+ G    A +LF  +                               
Sbjct: 314 PDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDM 373

Query: 227 --EFGVVCEPDAITYSTIIDGLCKEA--GSA--------------NFLGFSCMAS-FSAL 267
              +G+V  PD  TY+++I G  K+   G A              N   ++ +   F  L
Sbjct: 374 VTSYGIV--PDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKL 431

Query: 268 NKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
            K+   + L+       ++   + F CLI   CK  ++  A E+F+ +PR G  P+V T+
Sbjct: 432 GKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTF 491

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           N LI GLC   ++DE KH      L + + S G+  +  TYN LIN F + G +     +
Sbjct: 492 NSLISGLC---EVDEIKH---ALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKL 545

Query: 382 FGRILPSCFTPDAVTFTSLIKIL 404
              ++      D +T+ SLIK L
Sbjct: 546 VNEMVFQGSLLDEITYNSLIKGL 568



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 129/281 (45%), Gaps = 24/281 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P    FN L     K       + +F+ +   G  PD YT+N LI+  C++  + H   
Sbjct: 450 KPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALW 509

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++      + VT+ +LI        I EA  L  ++   G  LD  TYN+LI GLC
Sbjct: 510 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLC 569

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G    A +LFE+M       G+V  P +I+ + +I+GLC+       + F        
Sbjct: 570 RAGEVDKARSLFEKMLRD----GLV--PSSISCNILINGLCRSGMVEEAVEFQ------- 616

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +M        +    + F  LI+GLC+  +++    +F+ L   G+ P+ VTYN L+ 
Sbjct: 617 -KEMVLRGSTPDI----VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMS 671

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            LC  G +     Y+   LL + +   G  P+  T++IL+ 
Sbjct: 672 WLCKGGFV-----YDACLLLDEGIED-GFVPNDRTWSILLQ 706



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 51/103 (49%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           E    F   + +R S P + +FN L   L +    +  L++F++L   G+ PD  TYN L
Sbjct: 610 EEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTL 669

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174
           ++  CK G V    ++L   +   F P+  T++ L++ L  + 
Sbjct: 670 MSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSLVPQE 712



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  +    +K  C++ GE D       +A  +F+ ML      P   S NIL   L ++ 
Sbjct: 557 DEITYNSLIKGLCRA-GEVD-------KARSLFEKMLR-DGLVPSSISCNILINGLCRSG 607

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
             +  +   K + L G  PD  T+N LIN  C+ GR+  G  +  ++      PD VT+ 
Sbjct: 608 MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYN 667

Query: 165 SLIKDLCAESRIMEAAALFTK 185
           +L+  LC    + +A  L  +
Sbjct: 668 TLMSWLCKGGFVYDACLLLDE 688


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 154/331 (46%), Gaps = 24/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +AL     M N     P   +FN L   L K  H    + +   +   G  PD YTYN 
Sbjct: 276 EDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNS 335

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK+G V      L +++    +P+ VT+ +LI  LC E+++ EA  L   L   G
Sbjct: 336 VISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 395

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV T+N+LI GLC T +  VA+ LFEEM +        CEPD  TY+ +ID LC + 
Sbjct: 396 ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG------CEPDEFTYNMLIDSLCSKG 449

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L        S   +              + +  LIDG CK +K++ A E+F  + 
Sbjct: 450 KLDEALNMLKQMELSGCARSV------------ITYNTLIDGFCKANKIREAEEIFDEME 497

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+  N VTYN LI GLC      +++  E    L  ++   G  PD +TYN L+  FC
Sbjct: 498 VHGVSRNSVTYNTLIDGLC------KSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFC 551

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + G +     I   +  +   PD VT+ +LI
Sbjct: 552 RGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 173/373 (46%), Gaps = 41/373 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E L V  +M++    +P    +N +   L    +   V     ++++ G+ PD  T+N+
Sbjct: 135 DEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNV 194

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   C+  ++    ++L  +      PD  TFT++++    E  +  A  +  ++  FG
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFG 254

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C     + N +++G C+ G    ALN  +EM+N +G F     PD  T++T+++GLCK  
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFF-----PDQYTFNTLVNGLCKAG 309

Query: 251 GSANFLG--------------FSCMASFSALNKMA-------FYFPLVRVQCL--CLNFL 287
              + +               ++  +  S L K+        F   ++   C    + + 
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYN 369

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI  LCK ++++ A EL + L   G++P+V T+N LI+GLC       T+++     LF
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC------LTRNHRVAMELF 423

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI------ 401
           + + S G  PD +TYN+LI+  C  G++     +  ++  S      +T+ +LI      
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483

Query: 402 -KILEINSFFRQV 413
            KI E    F ++
Sbjct: 484 NKIREAEEIFDEM 496



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 148/321 (46%), Gaps = 31/321 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN L   L  T+++   + LF+ +   G  PD +TYN+LI+  C  G++     +
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++  S      +T+ +LI   C  ++I EA  +F ++ V G   +  TYNTLI+GLC+
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +     A  L ++M    G+     +PD  TY++++   C+        G     +   +
Sbjct: 518 SRRVEDASQLMDQMIM-EGQ-----KPDKFTYNSLLTHFCR--------GGDIKKAADIV 563

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             M         +   + +  LI GLCK  ++++A +L +S+   G+      YN +I+G
Sbjct: 564 QAMTSN----GCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQG 619

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG---RVSSGFVIFGR 384
           L       + K  E + L  + L      PD  +Y I+    C  G   R +  F++   
Sbjct: 620 L-----FRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLV--E 672

Query: 385 ILPSCFTPDAVTFTSLIKILE 405
           +L   F P+   F+SL  + E
Sbjct: 673 LLEKGFVPE---FSSLYMLAE 690



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 130/264 (49%), Gaps = 26/264 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ +F+ M + +   P   ++N+L   L      D  L++ K++ L+G      TYN LI
Sbjct: 419 AMELFEEMRS-KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + FCK  ++     +   +     + ++VT+ +LI  LC   R+ +A+ L  ++ + G +
Sbjct: 478 DGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQK 537

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D FTYN+L+   CR G    A ++ + M + NG     CEPD +TY T+I GLCK AG 
Sbjct: 538 PDKFTYNSLLTHFCRGGDIKKAADIVQAMTS-NG-----CEPDIVTYGTLISGLCK-AGR 590

Query: 253 ---ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS- 308
              A+ L  S      AL   A Y P+++             GL +  K   A  LF+  
Sbjct: 591 VEVASKLLRSIQMKGIALTPHA-YNPVIQ-------------GLFRKRKTTEAINLFREM 636

Query: 309 LPRAGLMPNVVTYNILIRGLCNDG 332
           L +    P+ V+Y I+ RGLCN G
Sbjct: 637 LEQNEAAPDAVSYRIVFRGLCNGG 660



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 6/180 (3%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD M     SR  VT +N L   L K++  +    L  ++ + G  PD++TYN L
Sbjct: 488 EAEEIFDEMEVHGVSRNSVT-YNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSL 546

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +  FC+ G +     ++  +  +   PD VT+ +LI  LC   R+  A+ L   +++ G 
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            L    YN +I GL R   T  A+NLF EM   N        PDA++Y  +  GLC   G
Sbjct: 607 ALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNE-----AAPDAVSYRIVFRGLCNGGG 661


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 172/362 (47%), Gaps = 59/362 (16%)

Query: 65  ITSITPNEALCV--FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           IT I  +E   V  F+ +L+ +   PP+  F  + G L K   Y T +SL +++ L G+ 
Sbjct: 33  ITIIKNDEHNLVSSFNRLLHQKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIA 92

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
            +  T NILINCF ++G+    F V   IL+  + P+ +T T+LIK LC           
Sbjct: 93  SNLVTLNILINCFSQLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLC----------- 141

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
              L+V        +Y TLINGLC+ G    AL L   +       G + +P+ + Y+TI
Sbjct: 142 ---LKV--------SYGTLINGLCKVGQARAALQLLRRVD------GKLVQPNVVMYNTI 184

Query: 243 IDGLCK----------------EAGSANFLGFSCMAS-FSALNKMAFYFPLVRVQCL--- 282
           ID +CK                E  S + + +S + S F  + K+     L     L   
Sbjct: 185 IDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENI 244

Query: 283 ---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                 F  L+DG CK  K+K  + +F  + + G+ PNVVTY  L+ G C   Q+++   
Sbjct: 245 KPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANS 304

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
                 +F  +   G+ PD  +YNI+IN FCKI +V     +F ++      P+ VT+TS
Sbjct: 305 ------IFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTS 358

Query: 400 LI 401
           LI
Sbjct: 359 LI 360



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 148/336 (44%), Gaps = 62/336 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  ++  M++   S P V +++ L             + LF ++ L  + PD YT+NI
Sbjct: 195 NEAFDLYSEMVSEGIS-PDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNI 253

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ FCK G++  G  V   +++    P+ VT+ SL+   C   ++ +A ++F  +   G
Sbjct: 254 LVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGG 313

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  +YN +ING C+      A+NLF++M   N        P+ +TY+++IDGLCK  
Sbjct: 314 VNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKN------IIPNVVTYTSLIDGLCKSG 367

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                                          K+  A +L   + 
Sbjct: 368 -----------------------------------------------KISYALKLVDEMH 380

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDE-----TKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
             G+ P+++TY+ ++  LC + Q+D+     TK  + V   F+ L   G   D+Y Y ++
Sbjct: 381 DRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQV---FEDLFVKGYNLDVYAYTVM 437

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           I  FC  G  +    +  ++  +   PDA T+  +I
Sbjct: 438 IQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIII 473



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%)

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G + +   Y T   L +++   G+  +L T NILINCF ++G+    F +F  IL   + 
Sbjct: 68  GSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANILKKGYD 127

Query: 392 PDAVTFTSLIK 402
           P+ +T T+LIK
Sbjct: 128 PNVITLTTLIK 138


>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
          Length = 861

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/339 (31%), Positives = 169/339 (49%), Gaps = 17/339 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYT 127
            +A  VFD +L  R     +   N     +A+      V S + R+   G   + PD  T
Sbjct: 32  EDARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGADEVTPDLCT 89

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKL 186
           Y ILI C C+ GR+  GF  LG +++  F  +A+TFT L+K LCA+ R  +A  +   ++
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              GC  +VF+YN L+NGLC    +  AL L   MA+   + G    PD ++Y+T+I+G 
Sbjct: 150 TELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMAD---DRGGGSPPDVVSYTTVINGF 206

Query: 247 CKEAGSAN-FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
            KE  S   +  +  M     L  +  Y  ++   C     +      CK  ++  + +L
Sbjct: 207 FKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKG-QAMDKPWSHCKEGRVIESEKL 265

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  + R G+ P+++TY+ LI G C  G+MDE         L   + S GL P+  TY+ L
Sbjct: 266 FDLMVRIGVKPDIITYSTLIDGYCLAGKMDE------AMKLLSGMVSVGLKPNTVTYSTL 319

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           IN +CKI R+    V+F  +  S  +PD +T+  +++ L
Sbjct: 320 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGL 358



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 138/326 (42%), Gaps = 41/326 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRL---NLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P V S+N L   L         L L   +      G  PD  +Y  +IN F K G     
Sbjct: 156 PNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCA------------ESRIMEAAALFTKLRVFGCE 192
           +     +L     PD VT++S+I  LC             E R++E+  LF  +   G +
Sbjct: 216 YSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVK 275

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TY+TLI+G C  G    A+ L   M +      V  +P+ +TYST+I+G CK +  
Sbjct: 276 PDIITYSTLIDGYCLAGKMDEAMKLLSGMVS------VGLKPNTVTYSTLINGYCKISRM 329

Query: 253 ANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            + L  F  M S               V    + +  ++ GL +  +   A+EL+  +  
Sbjct: 330 EDALVLFKEMESSG-------------VSPDIITYNIILQGLFQTRRTAAAKELYVRITE 376

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           +G    + TYNI++ GLC +   D+         +F+ L    L  +  T+NI+I+   K
Sbjct: 377 SGTQIELSTYNIILHGLCKNKLTDD------ALQMFQNLCLMDLKLEARTFNIMIDALLK 430

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTF 397
           +GR      +F     +   P+  T+
Sbjct: 431 VGRNDEAKDLFVAFSSNGLVPNYWTY 456



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 131/309 (42%), Gaps = 38/309 (12%)

Query: 71  NEALCVFDYMLNMRP--SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
            EAL +   M + R   S P V S+  +     K    D   S +  +   G+ PD  TY
Sbjct: 175 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 234

Query: 129 NILINCF------------CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
           + +I               CK GRV     +   ++R    PD +T+++LI   C   ++
Sbjct: 235 SSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 294

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
            EA  L + +   G + +  TY+TLING C+      AL LF+EM +          PD 
Sbjct: 295 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG------VSPDI 348

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           ITY+ I+ GL +   +A            A  ++         Q     +  ++ GLCK 
Sbjct: 349 ITYNIILQGLFQTRRTA------------AAKELYVRITESGTQIELSTYNIILHGLCKN 396

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
                A ++FQ+L    L     T+NI+I  L   G+ DE K       LF   +S GL 
Sbjct: 397 KLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKD------LFVAFSSNGLV 450

Query: 357 PDLYTYNIL 365
           P+ +TY ++
Sbjct: 451 PNYWTYRLM 459



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 129/287 (44%), Gaps = 36/287 (12%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS---------- 111
           EGD      ++A   +  ML+ R   P V +++ +   L K +  D   S          
Sbjct: 209 EGD-----SDKAYSTYHEMLD-RGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIES 262

Query: 112 --LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
             LF  +   G+ PD  TY+ LI+ +C  G++     +L  ++     P+ VT+++LI  
Sbjct: 263 EKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLING 322

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
            C  SR+ +A  LF ++   G   D+ TYN ++ GL +T  T  A  L+  +     E G
Sbjct: 323 YCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT----ESG 378

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCL 289
              E    TY+ I+ GLCK     N L    +  F  L        L+ ++     F  +
Sbjct: 379 TQIELS--TYNIILHGLCK-----NKLTDDALQMFQNLC-------LMDLKLEARTFNIM 424

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
           ID L K+ +   A++LF +    GL+PN  TY ++   +   G ++E
Sbjct: 425 IDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEE 471


>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 169/338 (50%), Gaps = 17/338 (5%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYTY 128
           +A  VFD +L  R     +   N     +A+      V S + R+   G   + PD  TY
Sbjct: 33  DARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGADEVTPDLCTY 90

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKLR 187
            ILI C C+ GR+  GF  LG +++  F  +A+TFT L+K LCA+ R  +A  +   ++ 
Sbjct: 91  GILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMT 150

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             GC  +VF+YN L+NGLC    +  AL L   MA+   + G    PD ++Y+T+I+G  
Sbjct: 151 ELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMAD---DRGGGSPPDVVSYTTVINGFF 207

Query: 248 KEAGSAN-FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
           KE  S   +  +  M     L  +  Y  ++   C     +      CK  ++  + +LF
Sbjct: 208 KEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKG-QAMDKPWSHCKEGRVIESEKLF 266

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             + R G+ P+++TY+ LI G C  G+MDE         L   + S GL P+  TY+ LI
Sbjct: 267 DLMVRIGVKPDIITYSTLIDGYCLAGKMDE------AMKLLSGMVSVGLKPNTVTYSTLI 320

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           N +CKI R+    V+F  +  S  +PD +T+  +++ L
Sbjct: 321 NGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGL 358



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 138/326 (42%), Gaps = 41/326 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRL---NLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P V S+N L   L         L L   +      G  PD  +Y  +IN F K G     
Sbjct: 156 PNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCA------------ESRIMEAAALFTKLRVFGCE 192
           +     +L     PD VT++S+I  LC             E R++E+  LF  +   G +
Sbjct: 216 YSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVK 275

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TY+TLI+G C  G    A+ L   M +      V  +P+ +TYST+I+G CK +  
Sbjct: 276 PDIITYSTLIDGYCLAGKMDEAMKLLSGMVS------VGLKPNTVTYSTLINGYCKISRM 329

Query: 253 ANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            + L  F  M S               V    + +  ++ GL +  +   A+EL+  +  
Sbjct: 330 EDALVLFKEMESSG-------------VSPDIITYNIILQGLFQTRRTAAAKELYVRITE 376

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           +G    + TYNI++ GLC +   D+         +F+ L    L  +  T+NI+I+   K
Sbjct: 377 SGTQIELSTYNIILHGLCKNKLTDD------ALQMFQNLCLMDLKLEARTFNIMIDALLK 430

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTF 397
           +GR      +F     +   P+  T+
Sbjct: 431 VGRNDEAKDLFVAFSSNGLVPNYWTY 456



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 131/309 (42%), Gaps = 38/309 (12%)

Query: 71  NEALCVFDYMLNMRP--SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
            EAL +   M + R   S P V S+  +     K    D   S +  +   G+ PD  TY
Sbjct: 175 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 234

Query: 129 NILINCF------------CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
           + +I               CK GRV     +   ++R    PD +T+++LI   C   ++
Sbjct: 235 SSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 294

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
            EA  L + +   G + +  TY+TLING C+      AL LF+EM +          PD 
Sbjct: 295 DEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG------VSPDI 348

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           ITY+ I+ GL +   +A            A  ++         Q     +  ++ GLCK 
Sbjct: 349 ITYNIILQGLFQTRRTA------------AAKELYVRITESGTQIELSTYNIILHGLCKN 396

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
                A ++FQ+L    L     T+NI+I  L   G+ DE K       LF   +S GL 
Sbjct: 397 KLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKD------LFVAFSSNGLV 450

Query: 357 PDLYTYNIL 365
           P+ +TY ++
Sbjct: 451 PNYWTYRLM 459



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 129/287 (44%), Gaps = 36/287 (12%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS---------- 111
           EGD      ++A   +  ML+ R   P V +++ +   L K +  D   S          
Sbjct: 209 EGD-----SDKAYSTYHEMLD-RGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIES 262

Query: 112 --LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
             LF  +   G+ PD  TY+ LI+ +C  G++     +L  ++     P+ VT+++LI  
Sbjct: 263 EKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLING 322

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
            C  SR+ +A  LF ++   G   D+ TYN ++ GL +T  T  A  L+  +     E G
Sbjct: 323 YCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT----ESG 378

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCL 289
              E    TY+ I+ GLCK     N L    +  F  L        L+ ++     F  +
Sbjct: 379 TQIELS--TYNIILHGLCK-----NKLTDDALQMFQNLC-------LMDLKLEARTFNIM 424

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
           ID L K+ +   A++LF +    GL+PN  TY ++   +   G ++E
Sbjct: 425 IDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEE 471


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 173/343 (50%), Gaps = 31/343 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +F  M+  +P  P V SF+ L   +   KHY +V+SLF+ ++   +    +  +I
Sbjct: 54  DDAFSLFRQMVRTKP-LPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVF 189
           ++N  C M R   GF VL    +     + VTFT+LI+ L AE+++ +A  LF KL R  
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            CE +   Y T++NGLC+ GHT  A +L   M  G+       +P+  TY+ +ID  CK+
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGS------TKPNTRTYTIVIDAFCKD 226

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                        + S LN+M        +      +  LID LCK+S+ +  R LF  +
Sbjct: 227 G--------MLDGATSLLNEMK----QKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEM 274

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
               + PNV T+N +I GLC +G++++ +       + + +   G+ PD+ TYN++I+ +
Sbjct: 275 IHLNIYPNVCTFNSVIDGLCKEGKVEDAEE------IMRYMIEKGVDPDVITYNMIIDGY 328

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
              G+V     IF  ++     PD +++  L     IN + RQ
Sbjct: 329 GLRGQVDRAREIFDSMINKSIEPDIISYNIL-----INGYARQ 366



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 146/352 (41%), Gaps = 59/352 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +++ L   L K   ++ V +LF  +    ++P+  T+N +I+  CK G+V     +
Sbjct: 246 PDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEI 305

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  ++     PD +T+  +I       ++  A  +F  +     E D+ +YN LING  R
Sbjct: 306 MRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYAR 365

Query: 208 T-----------------------------------GHTIVALNLFEEMANGNGEFGVVC 232
                                               G T  A N F+EM +     G + 
Sbjct: 366 QKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSA----GHI- 420

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
            PD  T+ T++ G  K     N L    M+ F  L +        R       +  +IDG
Sbjct: 421 -PDLYTHCTLLGGYFK-----NGLVEEAMSHFHKLERR-------REDTNIQIYTAVIDG 467

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LCK  KL  A   F+ LP  GL P+V+TY  +I G C +G +DE K       + +++  
Sbjct: 468 LCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKD------MLRKMED 521

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            G   D  TYN+++  F +  +VS        I    F+ +A T   L+ I+
Sbjct: 522 NGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDII 573



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 42/223 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  +FD M+N +   P + S+NIL    A+ K  D  + + + ++  GL P   T N+
Sbjct: 335 DRAREIFDSMIN-KSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNV 393

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVT---------------------------- 162
           L++   ++GR          +L +   PD  T                            
Sbjct: 394 LLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRR 453

Query: 163 -------FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
                  +T++I  LC   ++ +A A F KL + G   DV TY  +I+G C+ G    A 
Sbjct: 454 EDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAK 513

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           ++  +M + NG     C  D  TY+ I+ G  +    +    F
Sbjct: 514 DMLRKMED-NG-----CLADNRTYNVIVRGFLRSNKVSEMKAF 550



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 1/152 (0%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           FD ML+     P + +   L G   K    +  +S F +L       +   Y  +I+  C
Sbjct: 411 FDEMLSA-GHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLC 469

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           K G++        ++      PD +T+T++I   C E  + EA  +  K+   GC  D  
Sbjct: 470 KNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNR 529

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
           TYN ++ G  R+          EE+A  +  F
Sbjct: 530 TYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSF 561


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 179/405 (44%), Gaps = 35/405 (8%)

Query: 8   NGRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITS 67
           NGR+  A  L        S N  +Y T  + L   ++   S  Q L++   +  + DI S
Sbjct: 203 NGRVDEARMLI--VDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVS 260

Query: 68  ITP-----------NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
                         +EAL +F  +L  +   P V ++NIL   L K    +    LF  L
Sbjct: 261 YNALIHGLAREQGVSEALKLFGSVLR-QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL 319

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
              GL PD  TY + I+  CK GRV    ++L  +      PD V+  ++I  LC E R+
Sbjct: 320 VKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRV 379

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
            EA  L + +   GC  +  ++NTLI G CR G    A+  F+EM     + GV  +P  
Sbjct: 380 DEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEML----KRGV--KPTV 433

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           +TY+ ++DGLCK            +  F A+ +      +V        +  LIDGL K 
Sbjct: 434 VTYNILVDGLCKARQEGRI--KEAITLFDAMIEKGRVPDVV-------TYSALIDGLGKA 484

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            KL  AR L  ++   G +PNV TYN LI GLC   ++DE         LF  +   G  
Sbjct: 485 GKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEA------LELFVAMVEKGCV 538

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           PD  TY  +I+  CK   V     +F   L +   P +  + SLI
Sbjct: 539 PDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLI 583



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 159/322 (49%), Gaps = 29/322 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + S+N L   LA+ +     L LF  +   G  P+  TYNILI+   K  RV+  F 
Sbjct: 255 KPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFE 314

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +++    PDA+T+T  I  LC   R+ +A  +   +   GC  DV ++N +INGLC
Sbjct: 315 LFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLC 374

Query: 207 RTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           +      A  L   M A G       C P+AI+++T+I G C+ AG         M +F 
Sbjct: 375 KEKRVDEAEVLLSGMEAKG-------CSPNAISFNTLICGQCR-AGKWK----KAMTTFK 422

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI---SKLKIARELFQSLPRAGLMPNVVTYN 322
            + K         V+   + +  L+DGLCK     ++K A  LF ++   G +P+VVTY+
Sbjct: 423 EMLKRG-------VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYS 475

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            LI GL   G++D+ +       L   + + G  P++YTYN LI+  C + +V     +F
Sbjct: 476 ALIDGLGKAGKLDDARR------LLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELF 529

Query: 383 GRILPSCFTPDAVTFTSLIKIL 404
             ++     PD +T+ ++I  L
Sbjct: 530 VAMVEKGCVPDTITYGTIISAL 551



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 175/391 (44%), Gaps = 68/391 (17%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D ++   ++   C++S  GD        A  VFD M       P   ++N L   L    
Sbjct: 49  DISTFNIYISGLCRASRIGD--------AQTVFDGM-RKHGFWPNRITYNALLSGLCNGG 99

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
                 +L++R+   G  PD  TYN L++ FCK+G++     +    ++  F PD VT+ 
Sbjct: 100 RMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYN 159

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH-------------- 210
           +LI   C   ++ EA  +  ++       DV TYN+L+NGLC+ G               
Sbjct: 160 ALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFS 219

Query: 211 -------TIV------------ALNLFEEMA-NGNGEFGVVCEPDAITYSTIIDGLCKEA 250
                  T++            A  L E+M  NG       C+PD ++Y+ +I GL +E 
Sbjct: 220 PNVITYSTLISGLCRELRRLESARQLLEKMVLNG-------CKPDIVSYNALIHGLAREQ 272

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G +  L       F ++ +   Y P V        +  LIDGL K  ++  A ELF  L 
Sbjct: 273 GVSEALKL-----FGSVLRQG-YEPEVP------TYNILIDGLLKEDRVNEAFELFSGLV 320

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           + GL P+ +TY + I GLC  G++      E   L+ K ++  G  PD+ ++N +IN  C
Sbjct: 321 KHGLEPDAITYTVFIDGLCKAGRV------EDALLMLKDMDEKGCVPDVVSHNAVINGLC 374

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K  RV    V+   +     +P+A++F +LI
Sbjct: 375 KEKRVDEAEVLLSGMEAKGCSPNAISFNTLI 405



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 135/308 (43%), Gaps = 50/308 (16%)

Query: 123 PDRYTYNILINCFCKMGRV--SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180
           PD YT  IL+    K G++  +H FV    +   C   D  TF   I  LC  SRI +A 
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC---DISTFNIYISGLCRASRIGDAQ 70

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
            +F  +R  G   +  TYN L++GLC  G    A  L+E M            PD +TY+
Sbjct: 71  TVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAG------YSPDVVTYN 124

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           T++ G CK  G  +      +  F    K  F   +V        +  LI+G CK  KL 
Sbjct: 125 TLLHGFCK-VGKLD----EALKIFDGAVKRGFVPDVV-------TYNALINGFCKADKLD 172

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET----------------------- 337
            A+ + Q +    L+P+VVTYN L+ GLC +G++DE                        
Sbjct: 173 EAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGL 232

Query: 338 ----KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
               +  E+   L +++   G  PD+ +YN LI+   +   VS    +FG +L   + P+
Sbjct: 233 CRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPE 292

Query: 394 AVTFTSLI 401
             T+  LI
Sbjct: 293 VPTYNILI 300



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 98/224 (43%), Gaps = 23/224 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM---GRVSHG 144
           P   SFN L     +   +   ++ FK +   G+ P   TYNIL++  CK    GR+   
Sbjct: 396 PNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEA 455

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             +   ++     PD VT+++LI  L    ++ +A  L   +   GC  +V+TYN+LI+G
Sbjct: 456 ITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISG 515

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMAS 263
           LC       AL LF  M          C PD ITY TII  LCK+      L  F     
Sbjct: 516 LCGLDKVDEALELFVAMVEKG------CVPDTITYGTIISALCKQEMVDKALALFDGSLE 569

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
              +     YF L             IDGLC ++++  A +L Q
Sbjct: 570 AGVVPTSGMYFSL-------------IDGLCAVARVDEALKLLQ 600


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 160/347 (46%), Gaps = 35/347 (10%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  +  +P + ++N L  CL K   +D  L L   +   G  PD  TYN LI+   K GR
Sbjct: 70  MQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGR 129

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +S  F +   +      PD  T+ SLI  L    R  +A  L  ++   GC  DV TY++
Sbjct: 130 LSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSS 189

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-- 258
           LI GL + G T+ A  LF+EM    G      +PD+IT++ ++D L K     + L    
Sbjct: 190 LITGLGKDGETVKAFKLFQEMKR-RGR-----KPDSITFTALMDALGKAGRVDDALELLD 243

Query: 259 ---------------SCMASFSALNKMAFYFPLV----RVQCL--CLNFLCLIDGLCKIS 297
                          + +A F  +  +   + L+    R  C    + + CLI GL K S
Sbjct: 244 EMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKAS 303

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           +L  A ++ + + + G  P+ +TYN LI GL   G +++         LF R+ S G  P
Sbjct: 304 QLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGR------LFDRMKSKGCNP 357

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           D+ TY+ LI    K  RV S  V+F  +      PD  T+ S+I +L
Sbjct: 358 DVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVL 404



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 160/357 (44%), Gaps = 36/357 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  +F+ +   + + P V S++ L   L +   ++  L +   +   G  P+ +TYN 
Sbjct: 26  EEAQLLFEELKAAKWT-PDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNT 84

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++C  K G+      +L  +  +   PD  T+  LI  L    R+ EA  LF ++R  G
Sbjct: 85  LVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERG 144

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  D FTYN+LI GL + G +  A+ L EEM          C PD +TYS++I GL K+ 
Sbjct: 145 CVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHG------CPPDVMTYSSLITGLGKDG 198

Query: 251 GSAN-FLGFSCM-------------ASFSALNKMAFYFPLVR---------VQCLCLNFL 287
            +   F  F  M             A   AL K       +          V+   + + 
Sbjct: 199 ETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYN 258

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI G  K+  L  A  L   + R G  P+VVTY+ LI GL    Q+DE         + 
Sbjct: 259 ALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQ------VL 312

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K++   G  PD  TYN LIN   K G ++    +F R+      PD VT+++LI  L
Sbjct: 313 KKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITAL 369



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 161/377 (42%), Gaps = 60/377 (15%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R  +P   +F  L   L K    D  L L   +   G+ P   TYN LI  F K+G 
Sbjct: 210 MKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGD 269

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +   + +L  + R+   PD VT++ LI  L   S++ EA  +  K+   GC  D  TYNT
Sbjct: 270 LVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNT 329

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGF 258
           LINGL + G    A  LF+ M +        C PD +TYST+I  L K A   SA  L F
Sbjct: 330 LINGLGKAGLLNDAGRLFDRMKSKG------CNPDVVTYSTLITALGKAARVESACVL-F 382

Query: 259 SCMASFSALNKMAFY-------------------FPLVRVQCLC---LNFLCLIDGLCKI 296
             M S      +  Y                   F  +R + L    + +   ++ L + 
Sbjct: 383 EEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRG 442

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET------------------- 337
            + K AR++F+ +  +GL+P+V TY+ L+ GL    ++D+                    
Sbjct: 443 GRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKF 502

Query: 338 ----------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
                      + +    L +  NS GL+P   +YN LI+   K GRVS  F     +  
Sbjct: 503 DECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKE 562

Query: 388 SCFTPDAVTFTSLIKIL 404
               PD V+++SLI  L
Sbjct: 563 QGGKPDIVSYSSLISAL 579



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 119/272 (43%), Gaps = 43/272 (15%)

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
           +P+ VT+ SL+  L    +  EA  LF +L+      DV +Y+ LIN L R G    AL 
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 217 LFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGS--------ANFLGFSCMAS---- 263
           +  EM A G       C+P+  TY+T++D L K AG         A      C+      
Sbjct: 66  VVAEMQAKG-------CKPNLWTYNTLVDCLGK-AGQFDEALRLLAEMRDNGCVPDVRTY 117

Query: 264 ---FSALNKMA-------FYFPLVRVQCLCLNFL--CLIDGLCKISKLKIARELFQSLPR 311
               S L K          +  +    C+   F    LI GL K+ + + A EL + + R
Sbjct: 118 NCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMER 177

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETV--FLLFKRLNSTGLFPDLYTYNILINCF 369
            G  P+V+TY+ LI GL  DG        ETV  F LF+ +   G  PD  T+  L++  
Sbjct: 178 HGCPPDVMTYSSLITGLGKDG--------ETVKAFKLFQEMKRRGRKPDSITFTALMDAL 229

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            K GRV     +   +      P  VT+ +LI
Sbjct: 230 GKAGRVDDALELLDEMKERGVKPGVVTYNALI 261



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 108/261 (41%), Gaps = 18/261 (6%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           E+ CV    +     +P + ++  +   L K    D    LF  +   GL PD  TYN  
Sbjct: 376 ESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAF 435

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N   + GR      +   +  S   PD  T+ +L+  L     + +A  L  +L   GC
Sbjct: 436 LNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGC 495

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D   ++  +  L   G+   A  L  + AN  G +     P A +Y+ +ID L K AG
Sbjct: 496 AFDSLKFDECLEILTSWGNVDEAHELL-QFANSKGLW-----PGASSYNALIDALAK-AG 548

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +        +F+ L  +        +    +++  LI  L +  ++  A EL + + +
Sbjct: 549 RVS-------EAFNTLEDLKEQGGKPDI----VSYSSLISALGQTGQIDTAFELLEEMSK 597

Query: 312 AGLMPNVVTYNILIRGLCNDG 332
            GL  +  +Y+ L+R L + G
Sbjct: 598 RGLKLSPRSYSNLVRKLQDWG 618


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 160/319 (50%), Gaps = 22/319 (6%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +FN L     + K+ +   SL + +  +G+  D  TYN L++  CK GR+     +
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQL 209

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L R+  S   PD V ++S +  LC   +++ A  +  ++R    + +V TYNT+++GLC+
Sbjct: 210 LERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCK 269

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +G    AL + E+MA+ +G     C  + + YST++DGLCK       LG +   + S +
Sbjct: 270 SGKIDTALEMMEQMASSDG-----CGLNVVGYSTVVDGLCK-------LGRT-QEARSVM 316

Query: 268 NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             MA      R  C    + +  L++GLCK  K++ A E  + +   G  PN VTY  L+
Sbjct: 317 EAMA------RAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLV 370

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC+ G++ E +      +           P + TYN LI   CK GR+      F R+
Sbjct: 371 HGLCSCGRLAEAERM-VEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRM 429

Query: 386 LPSCFTPDAVTFTSLIKIL 404
                 PD V+++++++ L
Sbjct: 430 RSQGCDPDGVSYSTIVEGL 448



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 148/323 (45%), Gaps = 31/323 (9%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           S P + +++ L     K    +    L K +   GL PD   Y  ++   CK  R+    
Sbjct: 78  STPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEAL 137

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +L  ++R+   P  +TF +LI   C E  +  A +L   +   G + DV TYNTL++GL
Sbjct: 138 ELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGL 197

Query: 206 CRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           C+ G    A  L E M A+G       C PD + YS+ + GLCK     N        + 
Sbjct: 198 CKAGRLQEAEQLLERMKASG-------CAPDVVAYSSFVYGLCKSGKVLN--------AH 242

Query: 265 SALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA-GLMPNVVTY 321
             L +M  + + P V      + +  ++DGLCK  K+  A E+ + +  + G   NVV Y
Sbjct: 243 QVLEQMRDSDHDPNV------VTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGY 296

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           + ++ GLC  G+  E +       + + +   G  PD+ TY+ L+N  CK G++      
Sbjct: 297 STVVDGLCKLGRTQEARS------VMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEA 350

Query: 382 FGRILPSCFTPDAVTFTSLIKIL 404
              +      P+AVT+ SL+  L
Sbjct: 351 VREMAMEGCKPNAVTYCSLVHGL 373



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 137/293 (46%), Gaps = 30/293 (10%)

Query: 116 LNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175
           ++ TG  P+  T+N L+N F K GR      +L  +      P+ V++  L++ LC   R
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 176 IMEAAALFTKLRVFGCEL--DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
             EA  L   +   G     D+ TY+TL++G C+ G    +  L +E+ +          
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRG------LR 114

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC--LCLNFLCLID 291
           PDA+ Y+ ++  LCK A                   +     ++R  C    + F  LI 
Sbjct: 115 PDALMYTKVMASLCKSA--------------RLGEALELLEEMIRAGCCPTLITFNTLIS 160

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           G C+   L++A  L Q++  +G+  +VVTYN L+ GLC  G++ E +       L +R+ 
Sbjct: 161 GCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQ------LLERMK 214

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++G  PD+  Y+  +   CK G+V +   +  ++  S   P+ VT+ +++  L
Sbjct: 215 ASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGL 267



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 160/373 (42%), Gaps = 71/373 (19%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN-------------- 133
           P   +FN L    +K         L + +   G+ P+  +YN L+               
Sbjct: 8   PNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEEL 67

Query: 134 -----------------------CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
                                   +CK G+V     +L  ++     PDA+ +T ++  L
Sbjct: 68  VRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASL 127

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C  +R+ EA  L  ++   GC   + T+NTLI+G CR  +  +A +L + MA      GV
Sbjct: 128 CKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMA----ASGV 183

Query: 231 VCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
             + D +TY+T++DGLCK      A  L     AS  A + +A+                
Sbjct: 184 --KADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSS-------------- 227

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
            + GLCK  K+  A ++ + +  +   PNVVTYN ++ GLC  G++D       + ++ +
Sbjct: 228 FVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKID-----TALEMMEQ 282

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI------- 401
             +S G   ++  Y+ +++  CK+GR      +   +  +   PD VT++SL+       
Sbjct: 283 MASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAG 342

Query: 402 KILEINSFFRQVA 414
           KI E     R++A
Sbjct: 343 KIEEAVEAVREMA 355



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 6/149 (4%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  V + M      RP V +++ L   L K    +  +   + + + G  P+  TY  
Sbjct: 310 QEARSVMEAMARA-GCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCS 368

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFT-----PDAVTFTSLIKDLCAESRIMEAAALFTK 185
           L++  C  GR++    ++  +           P   T+ +LI  LC   RI +A   F +
Sbjct: 369 LVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQR 428

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVA 214
           +R  GC+ D  +Y+T++ GL R+G  + A
Sbjct: 429 MRSQGCDPDGVSYSTIVEGLARSGRALQA 457


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 165/344 (47%), Gaps = 26/344 (7%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
            G +T    ++A  V   M+      P V ++N L     K       L +   +   G 
Sbjct: 361 HGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGC 420

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+ Y+Y IL++ FCK+G++   + VL  +      P+ V F  LI   C E RI EA  
Sbjct: 421 KPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 480

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +F ++   GC+ DV+T+N+LI+GLC       AL L  +M +     GVV   + +TY+T
Sbjct: 481 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE----GVVA--NTVTYNT 534

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFY-FPLVRVQCLCLNFLCLIDGLCKISKLK 300
           +I+   +              +   +N+M F   PL  +      +  LI GLC+  ++ 
Sbjct: 535 LINAFLRRG--------EIKEARKLVNEMVFQGSPLDEI-----TYNSLIKGLCRAGEVD 581

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            AR LF+ + R G  P+ ++ NILI GLC  G ++E   ++   +L       G  PD+ 
Sbjct: 582 KARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVL------RGSTPDIV 635

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           T+N LIN  C+ GR+  G  +F ++      PD VTF +L+  L
Sbjct: 636 TFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWL 679



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 165/383 (43%), Gaps = 60/383 (15%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VF  ML+ R   P + +F ++          D+ LSL + +   G  P+   Y  LI
Sbjct: 201 AANVFYDMLS-RKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLI 259

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +   K  RV+    +L  +      PDA TF  +I  LC   RI EAA +  ++ + G  
Sbjct: 260 HSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFA 319

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEE----------------------------MANG 224
            D  TY  L+NGLC+ G    A +LF                              +++ 
Sbjct: 320 PDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDM 379

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEA--GSA--------------NFLGFSCMAS-FSAL 267
              +G+V  PD  TY+++I G  KE   G A              N   ++ +   F  L
Sbjct: 380 VTSYGIV--PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKL 437

Query: 268 NKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
            K+   + ++       ++   + F CLI   CK  ++  A E+F+ +PR G  P+V T+
Sbjct: 438 GKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTF 497

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           N LI GLC   ++DE KH      L + + S G+  +  TYN LIN F + G +     +
Sbjct: 498 NSLISGLC---EVDEIKH---ALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKL 551

Query: 382 FGRILPSCFTPDAVTFTSLIKIL 404
              ++      D +T+ SLIK L
Sbjct: 552 VNEMVFQGSPLDEITYNSLIKGL 574



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++N L   L +    D   SLF+++   G  P   + NILIN  C+ G V         +
Sbjct: 566 TYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEM 625

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +    TPD VTF SLI  LC   RI +   +F KL+  G   D  T+NTL++ LC+ G  
Sbjct: 626 VLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFV 685

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
             A  L +E      E G V  P+  T+S ++  +  +
Sbjct: 686 YDACLLLDEGI----EDGFV--PNHRTWSILLQSIIPQ 717



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  +    +K  C++ GE D       +A  +F+ ML      P   S NIL   L ++ 
Sbjct: 563 DEITYNSLIKGLCRA-GEVD-------KARSLFEKMLR-DGHAPSNISCNILINGLCRSG 613

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
             +  +   K + L G  PD  T+N LIN  C+ GR+  G  +  ++      PD VTF 
Sbjct: 614 MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFN 673

Query: 165 SLIKDLCAESRIMEAAALFTK 185
           +L+  LC    + +A  L  +
Sbjct: 674 TLMSWLCKGGFVYDACLLLDE 694



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 51/103 (49%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           E    F   + +R S P + +FN L   L +    +  L++F++L   G+ PD  T+N L
Sbjct: 616 EEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTL 675

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174
           ++  CK G V    ++L   +   F P+  T++ L++ +  + 
Sbjct: 676 MSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSIIPQE 718


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 167/355 (47%), Gaps = 40/355 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  ML+ R   P + SF+ L G  ++  H D  L  F+ +  +GL PD   Y IL
Sbjct: 308 EAKDIFSDMLH-RGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTIL 366

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN +C+ G +S    +  ++L      D V + +++  LC +  + +A ALF ++   G 
Sbjct: 367 INGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGV 426

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--E 249
             D  T+ TLI+G C+ G+   AL+LF  M   N       +PD +TY+ +IDG CK  E
Sbjct: 427 VPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKN------IKPDIVTYNILIDGFCKTTE 480

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC--------------------- 288
              AN L ++ M S         Y  LV   C  L F+                      
Sbjct: 481 MEKANEL-WNEMISRKIFPNHISYAILVNGYC-NLGFVSEAFRLWDEMIRKGIKPTLVTC 538

Query: 289 --LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             +I G C+   L  A E    +   G+ P+ +TYN LI G      MD+       F L
Sbjct: 539 NTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKA------FFL 592

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             ++ + GL PD+ TYN+++N FC+ GR+    +I  +++     PD  T+T+LI
Sbjct: 593 INKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLI 647



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 155/329 (47%), Gaps = 25/329 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VF+ ML++  S P  T++N L     +  ++     +F  +   G+ PD  +++ LI
Sbjct: 274 AKGVFNEMLSIGLS-PDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLI 332

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
               + G +    +    +  S   PD V +T LI   C    + EA  +  K+   GC 
Sbjct: 333 GVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCA 392

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           LDV  YNT++NGLC+      A  LF+EM     E GVV  PD  T++T+I G CKE   
Sbjct: 393 LDVVAYNTILNGLCKKKLLADANALFDEMV----ERGVV--PDFCTFTTLIHGHCKEGNM 446

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
              L       F  + +      +V        +  LIDG CK ++++ A EL+  +   
Sbjct: 447 GKALSL-----FGIMTQKNIKPDIV-------TYNILIDGFCKTTEMEKANELWNEMISR 494

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
            + PN ++Y IL+ G CN G + E       F L+  +   G+ P L T N +I  +C+ 
Sbjct: 495 KIFPNHISYAILVNGYCNLGFVSEA------FRLWDEMIRKGIKPTLVTCNTVIKGYCRS 548

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G +S      G+++     PD++T+ +LI
Sbjct: 549 GDLSKADEFLGKMISEGVGPDSITYNTLI 577



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 144/316 (45%), Gaps = 24/316 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++N +   L K   Y     +F  +   GL PD  TYN L+   C+         
Sbjct: 252 KPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKD 311

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L    +PD ++F+SLI        + +A   F  ++  G   D   Y  LING C
Sbjct: 312 IFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYC 371

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G    AL + ++M     E G  C  D + Y+TI++GLCK+           +A  +A
Sbjct: 372 RNGMMSEALEIRDKML----EQG--CALDVVAYNTILNGLCKK---------KLLADANA 416

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L        +V   C    F  LI G CK   +  A  LF  + +  + P++VTYNILI 
Sbjct: 417 LFDEMVERGVVPDFC---TFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILID 473

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C   +M++         L+  + S  +FP+  +Y IL+N +C +G VS  F ++  ++
Sbjct: 474 GFCKTTEMEKANE------LWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMI 527

Query: 387 PSCFTPDAVTFTSLIK 402
                P  VT  ++IK
Sbjct: 528 RKGIKPTLVTCNTVIK 543



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 130/310 (41%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           F++L     + +  +     FK L   G        N L+    KMG V   + V   I 
Sbjct: 118 FDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIA 177

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           RS    +  T   ++  LC + +I +       +   G   D+ TYNTLIN  CR G   
Sbjct: 178 RSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLG 237

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMA 271
            A  +   M+      G   +P   TY+ +I+GLCK+       G F+ M S        
Sbjct: 238 EAFEVMNSMS------GKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTT 291

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
            Y  L+   C   NFL              A+++F  +   G+ P++++++ LI     +
Sbjct: 292 TYNTLLVESCRNNNFLE-------------AKDIFSDMLHRGVSPDLISFSSLIGVSSRN 338

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G +D+   Y      F+ + ++GL PD   Y ILIN +C+ G +S    I  ++L     
Sbjct: 339 GHLDQALMY------FRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCA 392

Query: 392 PDAVTFTSLI 401
            D V + +++
Sbjct: 393 LDVVAYNTIL 402



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 107/254 (42%), Gaps = 24/254 (9%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D + F  LI+      ++ E    F  LR  G  + +   N+L+ GL + G   +A  ++
Sbjct: 114 DNLVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVY 173

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
            E+A    E  V       T + +++ LCK+    +   F        + +   +  +V 
Sbjct: 174 NEIARSGIELNVY------TLNIMVNALCKDHKIDDVKPF-----LIDMEQKGIFADIV- 221

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                  +  LI+  C+   L  A E+  S+   GL P + TYN +I GLC  G+    K
Sbjct: 222 ------TYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAK 275

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  +F  + S GL PD  TYN L+   C+         IF  +L    +PD ++F+
Sbjct: 276 G------VFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFS 329

Query: 399 SLIKILEINSFFRQ 412
           SLI +   N    Q
Sbjct: 330 SLIGVSSRNGHLDQ 343



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 100/245 (40%), Gaps = 50/245 (20%)

Query: 40  RLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGC 99
           R  V D  +    +   CK    G        +AL +F  M   +  +P + ++NIL   
Sbjct: 424 RGVVPDFCTFTTLIHGHCKEGNMG--------KALSLFGIM-TQKNIKPDIVTYNILIDG 474

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV------------ 147
             KT   +    L+  +    +FP+  +Y IL+N +C +G VS  F +            
Sbjct: 475 FCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPT 534

Query: 148 -----------------------LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
                                  LG+++     PD++T+ +LI        + +A  L  
Sbjct: 535 LVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLIN 594

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           K+   G + DV TYN ++NG CR G    A  +  +M     E G+  +PD  TY+T+I+
Sbjct: 595 KMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMI----ERGI--DPDRSTYTTLIN 648

Query: 245 GLCKE 249
           G   +
Sbjct: 649 GYVSQ 653



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  ++D M+  +  +P + + N +     ++           ++   G+ PD  TYN 
Sbjct: 517 SEAFRLWDEMIR-KGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNT 575

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN F K   +   F ++ ++      PD VT+  ++   C + R+ EA  +  K+   G
Sbjct: 576 LINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERG 635

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            + D  TY TLING     +   A    +EM
Sbjct: 636 IDPDRSTYTTLINGYVSQDNLKEAFRFHDEM 666


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 165/359 (45%), Gaps = 44/359 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL-FPDRYTYN 129
           ++A+  F  ML++ P  P + S N L   + KTKHY TV+SL   L+  G   P   T +
Sbjct: 37  DDAVSTFHRMLHLHPP-PSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLS 95

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           I IN    +G++   F V+ +I++  F  D  T T+L+K LC + R  EA  L+      
Sbjct: 96  IFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSK 155

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   D   Y TLINGLC+ G T  A+ L  +M  G         P+ I Y+ ++DGLCKE
Sbjct: 156 GFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGG------VRPNLIMYNMVVDGLCKE 209

Query: 250 A-------------GSA--------NFL--GFSCMASFSA----LNKMAFYFPLVRVQCL 282
                         G          N L  GF     F      LN+M      VR    
Sbjct: 210 GLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKED-VRPDVY 268

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
             N   L+D LCK+  +  AR +F  + + GL P+VV+ N L+ G C  G M E K    
Sbjct: 269 TFNI--LVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKE--- 323

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              +F R+   G  P++ +Y+ LIN +CK+  V     +   +      PD VT+  L+
Sbjct: 324 ---VFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLL 379



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 136/288 (47%), Gaps = 36/288 (12%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD YT+NIL++  CK+G V+    V G +++    PD V+  +L+   C    + EA  +
Sbjct: 265 PDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEV 324

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F ++   G   +V +Y+TLING C+      AL L  EM   N        PD +TY+ +
Sbjct: 325 FDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRN------LVPDTVTYNCL 378

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC------LNFLCLIDGLCKI 296
           +DGL K                    ++ + + LV            + +  L+D   K 
Sbjct: 379 LDGLSKSG------------------RVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKR 420

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
             L  A  LFQ +   G+ PN+ TYNILI GLC  G+M   K       +F+ L+  G  
Sbjct: 421 ECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKE------IFQLLSVKGCR 474

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           P++ TYNI+IN   + G +     +   ++   F P+AVTF  L++ L
Sbjct: 475 PNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLVRAL 522



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 127/264 (48%), Gaps = 26/264 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ + + M+     RP V +FNIL   L K        ++F  +   GL PD  + N L+
Sbjct: 250 AVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALM 309

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N +C  G +S    V  R++     P+ +++++LI   C    + EA  L T++      
Sbjct: 310 NGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLV 369

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            D  TYN L++GL ++G  +   +L E M A+G         PD ITY+ ++D       
Sbjct: 370 PDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQA-------PDLITYNVLLD------- 415

Query: 252 SANFLGFSCMASFSALNKMAF---YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
             ++L   C+    AL +        P +R       +  LIDGLCK  ++K A+E+FQ 
Sbjct: 416 --DYLKRECLDKALALFQHIVDTGISPNIRT------YNILIDGLCKGGRMKAAKEIFQL 467

Query: 309 LPRAGLMPNVVTYNILIRGLCNDG 332
           L   G  PN+ TYNI+I GL  +G
Sbjct: 468 LSVKGCRPNIRTYNIMINGLRREG 491



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 155/373 (41%), Gaps = 66/373 (17%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           P T   ++ G   K + ++  L+L+      G   D   Y  LIN  CKMG+      +L
Sbjct: 126 PFTLTTLMKGLCLKGRTFEA-LNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELL 184

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
            ++ +    P+ + +  ++  LC E  + EA  L +++   G  +DVFTYN+LI+G C  
Sbjct: 185 RKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGA 244

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK---EAGSANFLGF------- 258
           G    A+ L  EM            PD  T++ ++D LCK    A + N  G        
Sbjct: 245 GQFQGAVRLLNEMVMKED-----VRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLE 299

Query: 259 ----------------SCMASFSAL-NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
                            CM+    + ++M     L  V    +++  LI+G CK+  +  
Sbjct: 300 PDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNV----ISYSTLINGYCKVKMVDE 355

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ--------------------------MD 335
           A  L   + +  L+P+ VTYN L+ GL   G+                          +D
Sbjct: 356 ALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLD 415

Query: 336 ETKHYE---TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           +    E       LF+ +  TG+ P++ TYNILI+  CK GR+ +   IF  +      P
Sbjct: 416 DYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRP 475

Query: 393 DAVTFTSLIKILE 405
           +  T+  +I  L 
Sbjct: 476 NIRTYNIMINGLR 488



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 7/180 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  VFD M+  R   P V S++ L     K K  D  L L   ++   L PD  TYN 
Sbjct: 319 SEAKEVFDRMVE-RGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNC 377

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++   K GRV + + ++  +  S   PD +T+  L+ D      + +A ALF  +   G
Sbjct: 378 LLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTG 437

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              ++ TYN LI+GLC+ G    A  +F+ ++         C P+  TY+ +I+GL +E 
Sbjct: 438 ISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKG------CRPNIRTYNIMINGLRREG 491



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 13/122 (10%)

Query: 49  LEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDT 108
           L+ +LK  C             ++AL +F ++++   S P + ++NIL   L K      
Sbjct: 414 LDDYLKRECL------------DKALALFQHIVDTGIS-PNIRTYNILIDGLCKGGRMKA 460

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
              +F+ L++ G  P+  TYNI+IN   + G +     +L  ++   F P+AVTF  L++
Sbjct: 461 AKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLVR 520

Query: 169 DL 170
            L
Sbjct: 521 AL 522


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 189/414 (45%), Gaps = 49/414 (11%)

Query: 9   GRMRFADRLS-----RKPTSSISENEPSYPTTTATLRLTVKDRASLEQ---FLKERCKSS 60
           GR+R  D L+     RK +SS++    +Y      L    K    LEQ   F KE   S 
Sbjct: 116 GRVR--DALAHLQDMRKSSSSVATG--TYNLVLKGLCWENKSANRLEQAMEFFKEMKASG 171

Query: 61  GEGDITS-------ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
            E D+ S       ++ +  +     + +     P + ++N+L     K        SL 
Sbjct: 172 VEPDLESYHILLSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLM 231

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           K +   G  P+ +TY+I+INC+CK+ +V   + V  +++ S   P+AVTF +LI   C  
Sbjct: 232 KEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKA 291

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT-GHTIVALNLFEEMANGNGEFGVVC 232
             + +A  LF ++   GC+  + TYNTLI+ LC+  G    A++LF ++       G   
Sbjct: 292 GMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLE------GAGL 345

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLI 290
            P  +TY+++I G C                   L++   YF  +  +C    + +  LI
Sbjct: 346 TPTIVTYNSLIQGFCDA---------------RRLSEAMQYFDEMEGKCAPNVITYSILI 390

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           DGLCK+ ++K A +  + +   G  P VVTY  LI G C  G++      ++  L F+++
Sbjct: 391 DGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGEL------KSALLFFEKM 444

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              G  P+   +N LI+  CK  R + G  +   +      PD +T+  LI  L
Sbjct: 445 KLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGL 498



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 25/309 (8%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLF-PDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           N L   L   + +D  L LFK + L GLF P+ +TYN+LI  FCK G++     V   + 
Sbjct: 1   NALLSGLVSARKHDQALRLFKEV-LAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMK 59

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   P+A T  +L+  LC   ++  A  LF +++         ++N L+ G    G   
Sbjct: 60  SSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVR 119

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            AL   ++M   +            TY+ ++ GLC E  SAN L    M  F  + K + 
Sbjct: 120 DALAHLQDMRKSSSSVATG------TYNLVLKGLCWENKSANRLE-QAMEFFKEM-KASG 171

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
             P +       ++  L+  L    ++  A  LF ++  +   P+++TYN+L+ G C  G
Sbjct: 172 VEPDLE------SYHILLSALSDSGRMAEAHALFSAMTCS---PDIMTYNVLMDGYCKIG 222

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           Q  E +       L K +   G  P+++TY+I+INC+CK+ +V   + +F +++ S   P
Sbjct: 223 QTYEAQS------LMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVP 276

Query: 393 DAVTFTSLI 401
           +AVTF +LI
Sbjct: 277 NAVTFNTLI 285



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 120/254 (47%), Gaps = 23/254 (9%)

Query: 87  RPPVTSFNILFGCLAKTKH-YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           +  + ++N L   L K +    T + LF +L   GL P   TYN LI  FC   R+S   
Sbjct: 310 KATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAM 369

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
                +   C  P+ +T++ LI  LC   R+ EAA     ++  G    V TY  LING 
Sbjct: 370 QYFDEMEGKC-APNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGF 428

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G    AL  FE+M          C P+ + ++T+IDGLCK   + + L   C     
Sbjct: 429 CKCGELKSALLFFEKMKLAG------CAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAE 482

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                    P V      + + CLI GLC  ++++ A+ LF  +  A   PNV T+N LI
Sbjct: 483 GCK------PDV------ITYNCLISGLCSANRVEDAQRLFDGMACA---PNVTTFNFLI 527

Query: 326 RGLCNDGQMDETKH 339
           RGLC   +++E ++
Sbjct: 528 RGLCAQKKVEEARN 541



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 80/179 (44%), Gaps = 11/179 (6%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+  FD M       P V +++IL   L K +         + +   G  P   TY  
Sbjct: 366 SEAMQYFDEMEG--KCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGG 423

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN FCK G +    +   ++  +   P+ V F +LI  LC   R  +   L   +   G
Sbjct: 424 LINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEG 483

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           C+ DV TYN LI+GLC       A  LF+ MA         C P+  T++ +I GLC +
Sbjct: 484 CKPDVITYNCLISGLCSANRVEDAQRLFDGMA---------CAPNVTTFNFLIRGLCAQ 533



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L     K     + L  F+++ L G  P+   +N LI+  CK  R + G  +
Sbjct: 416 PTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRL 475

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      PD +T+  LI  LC+ +R+ +A  LF  +    C  +V T+N LI GLC 
Sbjct: 476 LCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFLIRGLCA 532

Query: 208 TGHTIVALNLFE 219
                 A N+ +
Sbjct: 533 QKKVEEARNILD 544


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 177/352 (50%), Gaps = 33/352 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +F  M+  +P  P   SF+ L   L   KHY +V+S+F+ ++   +  D +  + 
Sbjct: 54  DDAFSLFRQMVTTKP-LPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFALST 112

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVF 189
           ++N  C M R   GF VL    +     + VTFT+LI+ L AE+++ +A  LF KL R  
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            CE D   Y T+++GLC+ GHT  A +L   M  G      + +PD   Y+ +ID  CK+
Sbjct: 173 ICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQG------ITKPDTCIYNIVIDAFCKD 226

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                        + S LN+M        +    + +  LIDGL K+S+ +  R LF  +
Sbjct: 227 G--------MLDGATSLLNEMK----QKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEM 274

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
               + P+V T+N +I GLC +G++++ +   T  +        G+ P+  TYN++++ +
Sbjct: 275 IHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMI------EKGVEPNEITYNVVMDGY 328

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQVA 414
           C  G++     IF  ++     PD +++T+LI       K+ +    FR+++
Sbjct: 329 CLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREIS 380



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 147/346 (42%), Gaps = 47/346 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++  L   L K   ++ V +LF  +    ++PD  T+N +I+  CK G+V     +
Sbjct: 246 PDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEEI 305

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  ++     P+ +T+  ++   C   ++  A  +F  +   G E D+ +Y  LING   
Sbjct: 306 MTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVE 365

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A+ LF E++  NG      +P  +T S ++ GL  E G        C   F   
Sbjct: 366 KKKMDKAMQLFREISQ-NG-----LKPSIVTCSVLLRGLF-EVGRT-----ECAKIFFDE 413

Query: 268 NKMAFYFPLVRVQCLCLN-----------------------------FLCLIDGLCKISK 298
            + A + P +   C  L                              +  +I+GLCK  K
Sbjct: 414 MQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGK 473

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           L  A   F+ LP  GL P+V+TY  +I G C +G +DE K       + +++   G  PD
Sbjct: 474 LDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKD------MLRKMEDNGCLPD 527

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             TYN+++  F +  +VS        I    F+ +A T   L+ I+
Sbjct: 528 NRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELLMDII 573



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 6/172 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + + ++L   L +    +     F  +   G  P+ YT+  L+  + K G V     
Sbjct: 385 KPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMS 444

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              ++ R     +   +T++I  LC   ++ +A A F KL + G   DV TY  +I+G C
Sbjct: 445 HFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYC 504

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           + G    A ++  +M + NG     C PD  TY+ I+ G  + +  +    F
Sbjct: 505 QEGLLDEAKDMLRKMED-NG-----CLPDNRTYNVIVRGFFRSSKVSEMKAF 550



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 6/169 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +   L G   K    +  +S F +L       +   Y  +IN  CK G++      
Sbjct: 421 PNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAHAT 480

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++      PD +T+T++I   C E  + EA  +  K+   GC  D  TYN ++ G  R
Sbjct: 481 FEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFR 540

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           +          +E+A  +  F      +A T   ++D + ++    N +
Sbjct: 541 SSKVSEMKAFLKEIAGKSFSF------EAATVELLMDIIAEDPSLLNMI 583



 Score = 44.7 bits (104), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+  F + L  R     +  +  +   L K    D   + F++L L GL PD  TY  
Sbjct: 440 EEAMSHF-HKLERRREDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTA 498

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           +I+ +C+ G +     +L ++  +   PD  T+  +++     S++ E  A   ++
Sbjct: 499 MISGYCQEGLLDEAKDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEI 554


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 150/314 (47%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L   L K           +R+   G  PD +TYN +I+ +CK   +     +
Sbjct: 182 PDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATEL 241

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L   +   F PD VT+ SLI  LCAE  +  A  LF + +    + D+  YN+L+ GLCR
Sbjct: 242 LKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCR 301

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  + AL +  EM          C PD  TY+ +I+GLCK    ++    + +    A+
Sbjct: 302 QGLILHALQVMNEMVEDG------CHPDIWTYNIVINGLCKMGNISD----AAVVMNDAI 351

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K   Y P V        F  +IDG CK  KL  A +L + +   G+ P+ +TYN ++ G
Sbjct: 352 VK--GYLPDV------FTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNG 403

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G+  E    ET    F+ +   G  P+  TYNILI  FCKI ++     +  R+  
Sbjct: 404 LCKAGKAKEVN--ET----FEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQ 457

Query: 388 SCFTPDAVTFTSLI 401
               PD ++F +LI
Sbjct: 458 DGLVPDTISFNTLI 471



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 155/365 (42%), Gaps = 33/365 (9%)

Query: 43  VKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAK 102
           V DR +    +   C    EGD+       AL +F+     +  +P +  +N L   L +
Sbjct: 251 VPDRVTYCSLINGLC---AEGDV-----ERALELFNEA-QAKDLKPDLVVYNSLVKGLCR 301

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
                  L +   +   G  PD +TYNI+IN  CKMG +S   VV+   +   + PD  T
Sbjct: 302 QGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFT 361

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
           F ++I   C   ++  A  L  ++ ++G   D  TYN+++NGLC+ G        FEEM 
Sbjct: 362 FNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMI 421

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
                    C P+AITY+ +I+  CK        G     S   L       P       
Sbjct: 422 LKG------CRPNAITYNILIENFCKINQLEEASGVIVRMSQDGL------VPDT----- 464

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
            ++F  LI G C+   L  A  LFQ L   G      T+NILI      G      + + 
Sbjct: 465 -ISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILI------GAYSSKLNMQM 517

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
              +F  + S G  PDLYTY +L++  CK   V   +V    ++   F P   TF  ++ 
Sbjct: 518 AEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLN 577

Query: 403 ILEIN 407
            L +N
Sbjct: 578 SLAMN 582



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 164/391 (41%), Gaps = 81/391 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR------- 140
           P   ++N +   L  T ++D    ++ R+   G+ PD  T+ + I  FC  GR       
Sbjct: 8   PAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRL 67

Query: 141 -----------------------VSHGFVVLGR-----ILRSCFTPDAVTFTSLIKDLCA 172
                                   +HG     R     +LR    PD  TF +++  LC 
Sbjct: 68  LRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQ 127

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           +  IME+ AL  K+   G  ++ FT N  I GLC  G    A+ L E M           
Sbjct: 128 KGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESM-------DAYI 180

Query: 233 EPDAITYSTIIDGLCKEAG---SANFL--------------------GF---SCMASFSA 266
            PD +TY+T++ GLCK++    +A +L                    G+     +   + 
Sbjct: 181 APDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATE 240

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L K A +   V  +   + +  LI+GLC    ++ A ELF       L P++V YN L++
Sbjct: 241 LLKDAIFKGFVPDR---VTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVK 297

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G +           +   +   G  PD++TYNI+IN  CK+G +S   V+    +
Sbjct: 298 GLCRQGLILHA------LQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAI 351

Query: 387 PSCFTPDAVTFTSLI----KILEINSFFRQV 413
              + PD  TF ++I    K L+++S  + V
Sbjct: 352 VKGYLPDVFTFNTMIDGYCKRLKLDSALQLV 382



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 162/350 (46%), Gaps = 35/350 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +FD ML  R   P V +FN +   L +        +L  ++   G+  +++T NI 
Sbjct: 98  DARHLFDEMLR-RDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIW 156

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I   C+ GR+    V L   + +   PD VT+ +L++ LC +S++ EAA    ++   GC
Sbjct: 157 IRGLCEGGRLEEA-VALVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGC 215

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D FTYNT+I+G C+      A  L ++        G V  PD +TY ++I+GLC E  
Sbjct: 216 IPDDFTYNTIIDGYCKRDMLQEATELLKDAIFK----GFV--PDRVTYCSLINGLCAEGD 269

Query: 252 SANFLGFSCMASFSALN-KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
               L     A    L   +  Y  LV+             GLC+   +  A ++   + 
Sbjct: 270 VERALELFNEAQAKDLKPDLVVYNSLVK-------------GLCRQGLILHALQVMNEMV 316

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P++ TYNI+I GLC  G + +        ++       G  PD++T+N +I+ +C
Sbjct: 317 EDGCHPDIWTYNIVINGLCKMGNISDAA------VVMNDAIVKGYLPDVFTFNTMIDGYC 370

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           K  ++ S   +  R+      PDA+T+ S++       K  E+N  F ++
Sbjct: 371 KRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEM 420



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 132/289 (45%), Gaps = 31/289 (10%)

Query: 116 LNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175
           ++L G  P    YN +++             V  R+L +   PDA T T  IK  C   R
Sbjct: 1   MDLFGCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGR 60

Query: 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
              A  L   L   GC++    Y T++ GL   GH   A +LF+EM   +        PD
Sbjct: 61  PHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRD------VFPD 114

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN-FLC--LIDG 292
             T++ ++  LC++           M S + L K       V  + + +N F C   I G
Sbjct: 115 VATFNNVLHALCQKG--------DIMESGALLAK-------VLKRGMSVNKFTCNIWIRG 159

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LC+  +L+ A  L +S+  A + P+VVTYN L+RGLC D ++ E   Y       +R+ +
Sbjct: 160 LCEGGRLEEAVALVESMD-AYIAPDVVTYNTLMRGLCKDSKVQEAAQY------LRRMMN 212

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G  PD +TYN +I+ +CK   +     +    +   F PD VT+ SLI
Sbjct: 213 QGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLI 261



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 42/92 (45%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +FNIL G  +   +      +F  +   G  PD YTY +L++  CK   V   +V L  +
Sbjct: 501 TFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEM 560

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           +   F P   TF  ++  L    R+ EA A+ 
Sbjct: 561 VSKGFVPSMATFGRVLNSLAMNHRVSEAVAII 592


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 166/325 (51%), Gaps = 25/325 (7%)

Query: 90   VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSHGFVVL 148
            V   N++   L   +  D+ L LFK +  +G  P D +TY+ +++   K G+V     ++
Sbjct: 912  VILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLV 971

Query: 149  GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
              ++    +P+ VT++SL+  LC   ++ EA AL  ++   GC  ++ TYNT+I+G C+ 
Sbjct: 972  EDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKL 1031

Query: 209  GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
            G    A +L EEM +G       C+P+ +TY+ ++D  CK   + + +G   +       
Sbjct: 1032 GRIDEAYHLLEEMVDGG------CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKG-- 1083

Query: 269  KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
                Y P +        +  L+D  CK  +++ A +L  S+ + G +PNVV+YN +I GL
Sbjct: 1084 ----YVPNL------FTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 1133

Query: 329  CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
            C       TK +E V LL + L S    PD+ T+N +I+  CK  RV   + +F  I  S
Sbjct: 1134 CK-----ATKVHEGVLLLEQML-SNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQES 1187

Query: 389  CFTPDAVTFTSLIKILEINSFFRQV 413
              TP+ VT+ SL+  L  +  F Q 
Sbjct: 1188 GCTPNLVTYNSLVHGLCKSRRFDQA 1212



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 165/375 (44%), Gaps = 70/375 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N +   L+K+   D  + L + +   G  P+ ++YN +++ FCK  RV +   +
Sbjct: 228 PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 287

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L +++     PD V++T++I  LC   ++ EA  +  K+   GC+ +V TY TL++G CR
Sbjct: 288 LEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCR 347

Query: 208 TGHTIVALNLFEEMANGNGEFGVV-----------------------------CEPDAIT 238
            G    A+ L  +M         +                             C PDAI 
Sbjct: 348 VGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAIN 407

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           YSTII G CK AG           +   L +M        V CL      LID LCK + 
Sbjct: 408 YSTIISGFCK-AGKLR-------EAHDLLEQMIRRGCRPDVACLST----LIDALCKAAA 455

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV--------------- 343
           +  A+EL +        P+VV Y+ILI  LC   ++ E + +  V               
Sbjct: 456 IDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNS 515

Query: 344 --------------FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                         FLLF R+ + G+ PD+ TY+I+I+ FCK   + S F +  R+  + 
Sbjct: 516 VVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAK 575

Query: 390 FTPDAVTFTSLIKIL 404
             PD VT+++LI  L
Sbjct: 576 CVPDVVTYSALINGL 590



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 159/336 (47%), Gaps = 29/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  V D M+  R  +P V ++  L     +    D  + L +++   G  P+  TYN 
Sbjct: 317 DEACRVMDKMIQ-RGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNN 375

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++ FC+   +     VL  ++++   PDA+ ++++I   C   ++ EA  L  ++   G
Sbjct: 376 IMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRG 435

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  DV   +TLI+ LC+      A  L           G+ C PD + YS +I  LCK  
Sbjct: 436 CRPDVACLSTLIDALCKAAAIDSAQELLRM------SIGMDCAPDVVAYSILIHALCKAK 489

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQS 308
                       + S L+ M      V+ +C    + +  ++DGLCK  ++  A  LF  
Sbjct: 490 --------RLPEAESWLDVM------VKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDR 535

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +  AG+MP+VVTY+I+I   C D  +D      + F + +R+      PD+ TY+ LIN 
Sbjct: 536 MRAAGVMPDVVTYSIVIHSFCKDNNLD------SAFKMLERMKEAKCVPDVVTYSALING 589

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            CK G V   F +F  +L     P+ VT+ +LI  L
Sbjct: 590 LCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGL 625



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 169/357 (47%), Gaps = 34/357 (9%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            + AL +F  M       P V +++ +   L K+   D    L + +   G  P+  TY+ 
Sbjct: 929  DSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSS 988

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            L++  CK G++     +L R+ RS  +P+ VT+ ++I   C   RI EA  L  ++   G
Sbjct: 989  LLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGG 1048

Query: 191  CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            C+ +V TY  L++  C+ G    A+ L E M     E G V  P+  TY++++D  CK+ 
Sbjct: 1049 CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMV----EKGYV--PNLFTYNSLLDMFCKKD 1102

Query: 251  GS-------ANFLGFSCMASFSALNKM---------AFYFPLVRVQCLCLN-------FL 287
                     ++ +   C+ +  + N +              L+  Q L  N       F 
Sbjct: 1103 EVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 1162

Query: 288  CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
             +ID +CK  ++ IA ELF  +  +G  PN+VTYN L+ GLC   + D+ +     +LL 
Sbjct: 1163 TIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAE-----YLLR 1217

Query: 348  KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +     G  PD+ TYN +I+  CK  RV   + +F ++L     PD VT++ +I  L
Sbjct: 1218 EMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSL 1274



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 148/317 (46%), Gaps = 27/317 (8%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P + ++N L     K    +    L   +   G  P+  +YN +I   CK  +V  G ++
Sbjct: 1086 PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLL 1145

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            L ++L +   PD VTF ++I  +C   R+  A  LF  ++  GC  ++ TYN+L++GLC+
Sbjct: 1146 LEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 1205

Query: 208  TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
            +     A  L  EM    G     C PD ITY+T+IDGLCK      A  L    ++   
Sbjct: 1206 SRRFDQAEYLLREMTRKQG-----CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 1260

Query: 266  ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            A + + +                +I  LCK   +  A  + + + + G  P  +TY  LI
Sbjct: 1261 APDDVTYSI--------------VISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLI 1306

Query: 326  RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
             G C  G +D  K  E + LL     S G +PD+ T++I I+   K GR+     +   +
Sbjct: 1307 DGFCKTGNLD--KALEILQLLL----SKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETM 1360

Query: 386  LPSCFTPDAVTFTSLIK 402
            L +   PD VT+ +L+K
Sbjct: 1361 LRAGLVPDTVTYNTLLK 1377



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 149/330 (45%), Gaps = 27/330 (8%)

Query: 87   RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            +P V ++ +L     K    +  + L + +   G  P+ +TYN L++ FCK   V     
Sbjct: 1050 QPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQ 1109

Query: 147  VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            +L  +++    P+ V++ ++I  LC  +++ E   L  ++    C  D+ T+NT+I+ +C
Sbjct: 1110 LLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMC 1169

Query: 207  RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASF 264
            +T    +A  LF  +          C P+ +TY++++ GLCK      A +L        
Sbjct: 1170 KTYRVDIAYELFNLIQESG------CTPNLVTYNSLVHGLCKSRRFDQAEYL-------L 1216

Query: 265  SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
              + +     P +      + +  +IDGLCK  ++  A +LF  +   GL P+ VTY+I+
Sbjct: 1217 REMTRKQGCSPDI------ITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIV 1270

Query: 325  IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
            I  LC    MDE  +   + L        G  P   TY  LI+ FCK G +     I   
Sbjct: 1271 ISSLCKWRFMDEANNVLELML------KNGFDPGAITYGTLIDGFCKTGNLDKALEILQL 1324

Query: 385  ILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
            +L     PD VTF+  I  L      RQ  
Sbjct: 1325 LLSKGSYPDVVTFSIFIDWLSKRGRLRQAG 1354



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 142/304 (46%), Gaps = 33/304 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + + M+  R  RP V   + L   L K    D+   L +        PD   Y+IL
Sbjct: 423 EAHDLLEQMIR-RGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSIL 481

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK  R+      L  ++++   PD VT+ S++  LC   RI +A  LF ++R  G 
Sbjct: 482 IHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGV 541

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV TY+ +I+  C+  +   A  + E M          C PD +TYS +I+GLCK AG
Sbjct: 542 MPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAK------CVPDVVTYSALINGLCK-AG 594

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQ 307
           + +        +F    +M        + C C    + +  LIDGLCKI+K++ A E+ +
Sbjct: 595 TVD-------KAFDVFQEM--------LGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLE 639

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            + +    P+ +TY  LI GLCN  +++E       + + + +   G  PD  TY  L+ 
Sbjct: 640 IMRKQSCTPDSITYTCLINGLCNASRLEEA------WRVLREMKDKGCLPDRMTYGTLLR 693

Query: 368 CFCK 371
              K
Sbjct: 694 ALQK 697



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 132/269 (49%), Gaps = 30/269 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++IL   L K K      S    +     +PD  TYN +++  CK  R++  F++
Sbjct: 473 PDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLL 532

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R+  +   PD VT++ +I   C ++ +  A  +  +++   C  DV TY+ LINGLC+
Sbjct: 533 FDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCK 592

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A ++F+EM       G  C P+ +TY+T+IDGLCK                + +
Sbjct: 593 AGTVDKAFDVFQEM------LGCGCAPNLVTYNTLIDGLCK---------------INKV 631

Query: 268 NKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            + A    ++R Q      + + CLI+GLC  S+L+ A  + + +   G +P+ +TY  L
Sbjct: 632 EQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTL 691

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNST 353
           +R L       +T + E V  L K + +T
Sbjct: 692 LRAL------QKTNNLELVEQLLKEMEAT 714



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 136/305 (44%), Gaps = 26/305 (8%)

Query: 100  LAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
            L   ++ D  L  F    +  G   D YT N L+    ++ R      V    L  C +P
Sbjct: 818  LQGVRNGDAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKL--CCSP 875

Query: 159  DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
            +  TFT LI  LC    I  A  L  ++   G   +V  +N +I GLC       AL LF
Sbjct: 876  NMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELF 935

Query: 219  EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
            +EM          C PD  TYSTI+D L K     +    +C      ++K     P V 
Sbjct: 936  KEMEESGS-----CPPDVFTYSTIVDSLVKSGKVDD----ACRLVEDMVSKGC--SPNV- 983

Query: 279  VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                 + +  L+ GLCK  KL  A  L Q + R+G  PN+VTYN +I G C  G++DE  
Sbjct: 984  -----VTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAY 1038

Query: 339  HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
            H      L + +   G  P++ TY +L++ FCK G+      +   ++   + P+  T+ 
Sbjct: 1039 H------LLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYN 1092

Query: 399  SLIKI 403
            SL+ +
Sbjct: 1093 SLLDM 1097



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 152/334 (45%), Gaps = 31/334 (9%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            + AL  FD+  +         + N L   L + K     L +++  N     P+ +T+ I
Sbjct: 825  DAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYR--NKLCCSPNMFTFTI 882

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            LI+  C+ G +   + +L  + R     + +    +IK LC+  ++  A  LF ++   G
Sbjct: 883  LIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESG 942

Query: 191  -CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
             C  DVFTY+T+++ L ++G    A  L E+M +        C P+ +TYS+++ GLCK 
Sbjct: 943  SCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKG------CSPNVVTYSSLLHGLCK- 995

Query: 250  AGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQ 307
            AG  +                A    + R  C    + +  +IDG CK+ ++  A  L +
Sbjct: 996  AGKLD-------------EATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLE 1042

Query: 308  SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
             +   G  PNVVTY +L+   C  G+       E    L + +   G  P+L+TYN L++
Sbjct: 1043 EMVDGGCQPNVVTYTVLLDAFCKCGKA------EDAIGLVEVMVEKGYVPNLFTYNSLLD 1096

Query: 368  CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             FCK   V     +   ++     P+ V++ ++I
Sbjct: 1097 MFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVI 1130



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 137/298 (45%), Gaps = 33/298 (11%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
            LF  +N  GL      +  ++   C  G+ S   +    + ++C  PD+VT+ ++I  L
Sbjct: 182 ELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTC-PPDSVTYNTMINGL 240

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
               R+ +A  L  ++   G   +VF+YNT+++G C+      AL L E+M         
Sbjct: 241 SKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRG----- 295

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC----LNF 286
            C PD ++Y+T+I+GLCK     + +  +C      ++KM        +Q  C    + +
Sbjct: 296 -CPPDVVSYTTVINGLCK----LDQVDEAC----RVMDKM--------IQRGCQPNVITY 338

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             L+DG C++  L  A EL + +   G  PN +TYN ++   C    M      E    +
Sbjct: 339 GTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDM------ERAHQV 392

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            + +  TG  PD   Y+ +I+ FCK G++     +  +++     PD    ++LI  L
Sbjct: 393 LQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDAL 450



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 154/355 (43%), Gaps = 36/355 (10%)

Query: 68  ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYT 127
           I P  AL  F++       +  +   N L   L K   Y     LF+         D  T
Sbjct: 104 IDPGAALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVT 163

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           Y+ LI+ F + G++   + +   + R      A    S+++ LC   +  +A   F ++ 
Sbjct: 164 YSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMS 223

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
              C  D  TYNT+INGL ++     A+ L EEM + NG F     P+  +Y+T++ G C
Sbjct: 224 KT-CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVD-NG-FA----PNVFSYNTVLHGFC 276

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYF--PLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           K     N L          L +M      P V      +++  +I+GLCK+ ++  A  +
Sbjct: 277 KANRVENALWL--------LEQMVTRGCPPDV------VSYTTVINGLCKLDQVDEACRV 322

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
              + + G  PNV+TY  L+ G C  G +D          L +++   G  P+  TYN +
Sbjct: 323 MDKMIQRGCQPNVITYGTLVDGFCRVGDLD------GAVELVRKMTERGYRPNAITYNNI 376

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           ++ FC+   +     +   ++ +   PDA+ ++++I       K+ E +    Q+
Sbjct: 377 MHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQM 431



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 127/306 (41%), Gaps = 33/306 (10%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P   +++I+   L K +  D   ++ + +   G  P   TY  LI+ FCK G +     +
Sbjct: 1262 PDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEI 1321

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            L  +L     PD VTF+  I  L    R+ +A  L   +   G   D  TYNTL+ G C 
Sbjct: 1322 LQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCD 1381

Query: 208  TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL----------G 257
               T  A++LFE M          CEPD  TY+T++  L  +    + L          G
Sbjct: 1382 ASLTEDAVDLFEVMRQCG------CEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTG 1435

Query: 258  FSCMASFSALNKMAFYFPL-VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
            F      S+  + +      VR+ C       ++D   K    + AR++F+ + +     
Sbjct: 1436 FKLNHELSSKLEASIEVEADVRLGC------AIVDMFGKCGSPQDARKVFEGMDQR---- 1485

Query: 317  NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
            NVV ++ ++      G     K  E  F L++ +   G+ PD  T+  L+   C  G + 
Sbjct: 1486 NVVLWSAML------GVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMCCHAGLLD 1539

Query: 377  SGFVIF 382
            +    F
Sbjct: 1540 AAVDEF 1545



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 127/306 (41%), Gaps = 61/306 (19%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            ++AL +   +L+ + S P V +F+I    L+K         L + +   GL PD  TYN 
Sbjct: 1316 DKALEILQLLLS-KGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNT 1374

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTSLI---------KDLCAE-SRIMEA 179
            L+  FC    ++   V L  ++R C   PD  T+T+L+         KDL AE S+ M  
Sbjct: 1375 LLKGFCD-ASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVD 1433

Query: 180  AA------LFTKLRV-FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN------- 225
                    L +KL      E DV     +++   + G    A  +FE M   N       
Sbjct: 1434 TGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGSPQDARKVFEGMDQRNVVLWSAM 1493

Query: 226  -----------GEFGVV-------CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                         FG+         EPDA+T+ +++  +C  AG    L  + +  F ++
Sbjct: 1494 LGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLT-MCCHAG----LLDAAVDEFVSI 1548

Query: 268  NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            ++     P V       +F C+ID L ++  +  A +L   +P     P+  T+N L+  
Sbjct: 1549 SRDYGLEPGVD------HFSCVIDLLGRLGLVNEAEDLMLGMP---CKPSAATWNCLLSA 1599

Query: 328  --LCND 331
              +C D
Sbjct: 1600 YKICGD 1605


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 158/310 (50%), Gaps = 24/310 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           SF  L   L K    D    ++ ++  +G+ P   T+N +IN  CK GRV    +++  I
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            R    P+A T+TSLI   C    +  A A+F ++   GC+ +  TY+TLINGLC  G  
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRL 288

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A+++ EEM     + G+  EP   TY+  +  LC +AG ++        +   L KM 
Sbjct: 289 EEAMDMLEEMV----QKGI--EPTVYTYTIPLVSLC-DAGCSS-------EAVELLGKMK 334

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
               +  +Q     F  LI GL +  K +IA  L+  +   GL+P  VTYN LI  LC +
Sbjct: 335 KRGCVPNIQ----TFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVE 390

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G+      +ET F +FK + S G  P   TYN +I CFC +G +    VIF ++L +  +
Sbjct: 391 GR------FETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSS 444

Query: 392 PDAVTFTSLI 401
           P+ +T+ +LI
Sbjct: 445 PNVITYNTLI 454



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 152/342 (44%), Gaps = 37/342 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +F  L   L++   ++  + L+ ++   GL P   TYN LIN  C  GR    F +
Sbjct: 340 PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTI 399

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L     P   T+  +IK  C    I +A  +F K+   G   +V TYNTLI G C+
Sbjct: 400 FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCK 459

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
            G+   A+ L E M  GNG      +PDA TY+ +I G  +  +   A  L +  M    
Sbjct: 460 QGNLNNAMRLLEIM-KGNG-----LKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGI 513

Query: 266 ALNKMAF------YFPLVRV-QCLCL--------------NFLCLIDGLCKISKLKIARE 304
           + N + +      YF L +V   L L               +  +I G  K + +  A  
Sbjct: 514 SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAEN 573

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
               + + GL+PNV+TY   I GLC +G+          F +F  +     FP+LYTY+ 
Sbjct: 574 FCGKMVKQGLLPNVITYTSFIDGLCRNGRTG------LAFKIFHEMEKRNYFPNLYTYSS 627

Query: 365 LINCFCKIGRVSSG--FVIFGRILPSCFTPDAVTFTSLIKIL 404
           LI   C+ GR      + +  R+      P+  T+T+L+K L
Sbjct: 628 LIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGL 669



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 136/305 (44%), Gaps = 29/305 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  +F +ML+   S P   ++N +  C          + +F ++   G  P+  TYN LI
Sbjct: 396 AFTIFKWMLS-HGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLI 454

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
             +CK G +++   +L  +  +   PDA T+T LI       ++  A +LF  +   G  
Sbjct: 455 YGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGIS 514

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE--- 249
            +  TY  +I+G         AL LF +M     E G +  P + TY+ +I G  K    
Sbjct: 515 PNHVTYTAIIDGYFNLAKVDDALALFWKMV----ESGNL--PSSQTYNVMISGFSKTNSI 568

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
           + + NF G           KM     L  V    + +   IDGLC+  +  +A ++F  +
Sbjct: 569 SEAENFCG-----------KMVKQGLLPNV----ITYTSFIDGLCRNGRTGLAFKIFHEM 613

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            +    PN+ TY+ LI GLC +G+ ++ + Y     L  RL   G  P++ TY  L+   
Sbjct: 614 EKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYN----LLARLTHYGCEPNVDTYTTLVKGL 669

Query: 370 CKIGR 374
           C  GR
Sbjct: 670 CGEGR 674



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 159/374 (42%), Gaps = 63/374 (16%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           GDI      +A+ +FD ML    S P V ++N L     K  + +  + L + +   GL 
Sbjct: 426 GDI-----QKAMVIFDKMLKA-GSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLK 479

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD +TY  LI+ F + G++ H   +   ++    +P+ VT+T++I      +++ +A AL
Sbjct: 480 PDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALAL 539

Query: 183 FTKLRVFG---------------------CELD--------------VFTYNTLINGLCR 207
           F K+   G                      E +              V TY + I+GLCR
Sbjct: 540 FWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCR 599

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G T +A  +F EM   N        P+  TYS++I GLC+E  + +         ++ L
Sbjct: 600 NGRTGLAFKIFHEMEKRN------YFPNLYTYSSLIYGLCQEGRAED------AEMYNLL 647

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            ++  Y     V      +  L+ GLC   +   A +L  S+ + GL P+   Y  L+ G
Sbjct: 648 ARLTHYGCEPNVD----TYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIG 703

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C + ++      E+   +F  +++ G    L  Y  LI   CK   +     IF  +L 
Sbjct: 704 ECKNLKV------ESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLE 757

Query: 388 SCFTPDAVTFTSLI 401
             +  D V +T L+
Sbjct: 758 KHWNSDEVVWTVLL 771



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 120/267 (44%), Gaps = 21/267 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F  M+    + P   ++N++    +KT       +   ++   GL P+  TY  
Sbjct: 534 DDALALFWKMVE-SGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTS 592

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA--LFTKLRV 188
            I+  C+ GR    F +   + +  + P+  T++SLI  LC E R  +A    L  +L  
Sbjct: 593 FIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTH 652

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           +GCE +V TY TL+ GLC  G    A  L   M           +P    Y  ++ G CK
Sbjct: 653 YGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKG------LQPSEEIYRALLIGECK 706

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                N    S +  F +++ + F   L        ++  LI  LCK + ++ A+ +FQ+
Sbjct: 707 -----NLKVESALNIFYSMDTLGFQLHLS-------DYKALICALCKENFIEEAQCIFQT 754

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMD 335
           +       + V + +L+ GL  +G+ D
Sbjct: 755 MLEKHWNSDEVVWTVLLDGLLKEGETD 781



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 51/335 (15%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           ++ P   P    NIL       K+ D+VL  F  ++    F         ++CF  M   
Sbjct: 71  HLSPKLKPHHVVNIL----QTHKNTDSVLRFFFWISRRKFFKHD------MSCFVSM--- 117

Query: 142 SHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV---FGCELDVFT 197
                 L R++R   F P       +IK    E  +       +++     FG  L  FT
Sbjct: 118 ------LNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFT 171

Query: 198 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF-L 256
             TL+  L +     +A +++ +M N          P  +T++T+I+ LCK+       L
Sbjct: 172 --TLLIQLGKFDMVDLARDMYIKMLNSG------IRPSLLTFNTMINILCKKGRVQEAKL 223

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
             S +  + A       +P          +  LI G C+   L +A  +F  + + G  P
Sbjct: 224 IMSHIFRYDA-------YPNA------FTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDP 270

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           N VTY+ LI GLC++G+++E         + + +   G+ P +YTY I +   C  G  S
Sbjct: 271 NSVTYSTLINGLCSEGRLEEAMD------MLEEMVQKGIEPTVYTYTIPLVSLCDAGCSS 324

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411
               + G++      P+  TFT+LI  L  +  F 
Sbjct: 325 EAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFE 359


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 163/366 (44%), Gaps = 58/366 (15%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++ IL   L + +  D    L   +      PD   YN LI   CKMG++     V
Sbjct: 90  PTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNV 149

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L     PD +T+TSLI   C  + + EA  L  K++  G   D   YN L+NGLC+
Sbjct: 150 LKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCK 209

Query: 208 TGHTIVALNLFEEMANGNGE---------FGVVCE--------------------PDAIT 238
                    L EEM     E            +CE                    PD +T
Sbjct: 210 QNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVT 269

Query: 239 YSTIIDGLCK-------EAGSANFLGFSC----------MASFSALNKMAFYFPLVR--- 278
           Y++++DG CK       E    + +G  C          +  FS  +++A  + ++    
Sbjct: 270 YNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMF 329

Query: 279 ---VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
              +    + + CL+DGLCK  KL+ A EL + +      P+VVTY+IL+ GLC  G++D
Sbjct: 330 KAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVD 389

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           + +      LL + +   G  P+L T+N +I+ FCK G+V  G  +   +     TPD V
Sbjct: 390 DAR------LLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVV 443

Query: 396 TFTSLI 401
           T+++LI
Sbjct: 444 TYSTLI 449



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 157/331 (47%), Gaps = 31/331 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + + M+  R + P V ++  L G  ++         + + +   G+ PD  TYN 
Sbjct: 284 DEAERLLEDMVGRRCA-PTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNC 342

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G++     +L  ++     PD VT++ L+  LC   ++ +A  L   +   G
Sbjct: 343 LLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERG 402

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+ ++ T+NT+I+G C+ G       + E M        V C PD +TYST+IDG CK  
Sbjct: 403 CQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKE------VSCTPDVVTYSTLIDGYCK-- 454

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                            N+M   F ++ +     ++  +++GLC   K++ A+E+   + 
Sbjct: 455 ----------------ANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMT 498

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           + G  P    Y ++I GLC+  + DE         + + ++  G  P+LYTY+ILIN  C
Sbjct: 499 KQGCPPTSSHYALIIGGLCDVERGDE------ALKMLQVMSERGCEPNLYTYSILINGLC 552

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K  RV     +   +L     PD  T+TSLI
Sbjct: 553 KTKRVEDAINVLDVMLEKGCVPDVATYTSLI 583



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 140/296 (47%), Gaps = 39/296 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDT---VLSLFKRLNLTGLFPDRYT 127
           ++A  + + ML  R  +P + +FN +     K    D    VL L K ++ T   PD  T
Sbjct: 389 DDARLLLEMMLE-RGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCT---PDVVT 444

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           Y+ LI+ +CK  R+   F +LG       +PD  +++S+++ LC+  ++ EA  +   + 
Sbjct: 445 YSTLIDGYCKANRMQDAFAILG------ISPDKASYSSMLEGLCSTGKVEEAQEVMDLMT 498

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             GC      Y  +I GLC       AL + + M+    E G  CEP+  TYS +I+GLC
Sbjct: 499 KQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMS----ERG--CEPNLYTYSILINGLC 552

Query: 248 KEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
           K     + +     M     +  +A Y  L             IDG CKI+K+  A + F
Sbjct: 553 KTKRVEDAINVLDVMLEKGCVPDVATYTSL-------------IDGFCKINKMDAAYQCF 599

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
           +++  +G  P+ + YNILI G C  G ++  K  E + L+ ++    G  PD  TY
Sbjct: 600 KTMRDSGCEPDKLAYNILISGFCQSGNVE--KAIEVMQLMLEK----GCNPDAATY 649



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 147/321 (45%), Gaps = 34/321 (10%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           PS+P  +++  L    ++  +   VL +   +      PD  T+N ++  +C++G +   
Sbjct: 19  PSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRA 78

Query: 145 FVVL-GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
                G++  S   P A T+  LI  LC   RI EA  L  ++    C  D   YN LI 
Sbjct: 79  LSHFRGKMWCS---PTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIA 135

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GLC+ G    A N+ + M   +      C PD ITY+++I G C+               
Sbjct: 136 GLCKMGKIDAARNVLKMMLERS------CVPDVITYTSLIVGCCQ--------------- 174

Query: 264 FSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
            +AL++       ++   L    + +  L++GLCK ++L+   +L + +  AG  P+  +
Sbjct: 175 TNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFS 234

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN ++  LC  G+      YE    + +++      PD+ TYN L++ FCK+ ++     
Sbjct: 235 YNTVVACLCESGK------YEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAER 288

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +   ++     P  +T+T+LI
Sbjct: 289 LLEDMVGRRCAPTVITYTTLI 309



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 17/206 (8%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTS-FNILFGCLAKT 103
           D+AS    L+  C S+G+ +       EA  V D M   +   PP +S + ++ G L   
Sbjct: 470 DKASYSSMLEGLC-STGKVE-------EAQEVMDLM--TKQGCPPTSSHYALIIGGLCDV 519

Query: 104 KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTF 163
           +  D  L + + ++  G  P+ YTY+ILIN  CK  RV     VL  +L     PD  T+
Sbjct: 520 ERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATY 579

Query: 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           TSLI   C  +++  A   F  +R  GCE D   YN LI+G C++G+   A+ + + M  
Sbjct: 580 TSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLE 639

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKE 249
                   C PDA TY +++  L  E
Sbjct: 640 KG------CNPDAATYFSLMRSLTTE 659



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 109/282 (38%), Gaps = 61/282 (21%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P   TY  LI  F + G       +   +L   F+PD +T  +++K  C    +  A + 
Sbjct: 22  PSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSH 81

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F       C    FTY  LI+GLC+      A  L +EM   +      C PDA  Y+  
Sbjct: 82  FRG--KMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKD------CHPDAAVYN-- 131

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
                                                        CLI GLCK+ K+  A
Sbjct: 132 ---------------------------------------------CLIAGLCKMGKIDAA 146

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
           R + + +     +P+V+TY  LI G C    +DE +       L +++  +GL PD   Y
Sbjct: 147 RNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARK------LMEKMKESGLTPDTVAY 200

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           N L+N  CK  ++     +   ++ +   PD  ++ +++  L
Sbjct: 201 NALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACL 242



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 7/192 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   S++ +   L  T   +    +   +   G  P    Y ++I   C + R      +
Sbjct: 469 PDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKM 528

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P+  T++ LI  LC   R+ +A  +   +   GC  DV TY +LI+G C+
Sbjct: 529 LQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCK 588

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A   F+ M +        CEPD + Y+ +I G C+       +    +      
Sbjct: 589 INKMDAAYQCFKTMRDSG------CEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGC 642

Query: 268 N-KMAFYFPLVR 278
           N   A YF L+R
Sbjct: 643 NPDAATYFSLMR 654


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 158/310 (50%), Gaps = 24/310 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           SF  L   L K    D    ++ ++  +G+ P   T+N +IN  CK GRV    +++  I
Sbjct: 169 SFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHI 228

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            R    P+A T+TSLI   C    +  A A+F ++   GC+ +  TY+TLINGLC  G  
Sbjct: 229 FRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRL 288

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A+++ EEM     + G+  EP   TY+  +  LC +AG ++        +   L KM 
Sbjct: 289 EEAMDMLEEMV----QKGI--EPTVYTYTIPLVSLC-DAGCSS-------EAVELLGKMK 334

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
               +  +Q     F  LI GL +  K +IA  L+  +   GL+P  VTYN LI  LC +
Sbjct: 335 KRGCVPNIQ----TFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVE 390

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G+      +ET F +FK + S G  P   TYN +I CFC +G +    VIF ++L +  +
Sbjct: 391 GR------FETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSS 444

Query: 392 PDAVTFTSLI 401
           P+ +T+ +LI
Sbjct: 445 PNVITYNTLI 454



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 152/342 (44%), Gaps = 37/342 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +F  L   L++   ++  + L+ ++   GL P   TYN LIN  C  GR    F +
Sbjct: 340 PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTI 399

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L     P   T+  +IK  C    I +A  +F K+   G   +V TYNTLI G C+
Sbjct: 400 FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCK 459

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
            G+   A+ L E M  GNG      +PDA TY+ +I G  +  +   A  L +  M    
Sbjct: 460 QGNLNNAMRLLEIM-KGNG-----LKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGI 513

Query: 266 ALNKMAF------YFPLVRV-QCLCL--------------NFLCLIDGLCKISKLKIARE 304
           + N + +      YF L +V   L L               +  +I G  K + +  A  
Sbjct: 514 SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAEN 573

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
               + + GL+PNV+TY   I GLC +G+          F +F  +     FP+LYTY+ 
Sbjct: 574 FCGKMVKQGLLPNVITYTSFIDGLCRNGRTG------LAFKIFHEMEKRNYFPNLYTYSS 627

Query: 365 LINCFCKIGRVSSG--FVIFGRILPSCFTPDAVTFTSLIKIL 404
           LI   C+ GR      + +  R+      P+  T+T+L+K L
Sbjct: 628 LIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGL 669



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 136/305 (44%), Gaps = 29/305 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  +F +ML+   S P   ++N +  C          + +F ++   G  P+  TYN LI
Sbjct: 396 AFTIFKWMLS-HGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLI 454

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
             +CK G +++   +L  +  +   PDA T+T LI       ++  A +LF  +   G  
Sbjct: 455 YGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGIS 514

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE--- 249
            +  TY  +I+G         AL LF +M     E G +  P + TY+ +I G  K    
Sbjct: 515 PNHVTYTAIIDGYFNLAKVDDALALFWKMV----ESGNL--PSSQTYNVMISGFSKTNSI 568

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
           + + NF G           KM     L  V    + +   IDGLC+  +  +A ++F  +
Sbjct: 569 SEAENFCG-----------KMVKQGLLPNV----ITYTSFIDGLCRNGRTGLAFKIFHEM 613

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            +    PN+ TY+ LI GLC +G+ ++ + Y     L  RL   G  P++ TY  L+   
Sbjct: 614 EKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYN----LLARLTHYGCEPNVDTYTTLVKGL 669

Query: 370 CKIGR 374
           C  GR
Sbjct: 670 CGEGR 674



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 159/374 (42%), Gaps = 63/374 (16%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           GDI      +A+ +FD ML    S P V ++N L     K  + +  + L + +   GL 
Sbjct: 426 GDI-----QKAMVIFDKMLKA-GSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLK 479

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD +TY  LI+ F + G++ H   +   ++    +P+ VT+T++I      +++ +A AL
Sbjct: 480 PDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALAL 539

Query: 183 FTKLRVFG---------------------CELD--------------VFTYNTLINGLCR 207
           F K+   G                      E +              V TY + I+GLCR
Sbjct: 540 FWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCR 599

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G T +A  +F EM   N        P+  TYS++I GLC+E  + +         ++ L
Sbjct: 600 NGRTGLAFKIFHEMEKRN------YFPNLYTYSSLIYGLCQEGRAED------AEMYNLL 647

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            ++  Y     V      +  L+ GLC   +   A +L  S+ + GL P+   Y  L+ G
Sbjct: 648 ARLTHYGCEPNVD----TYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIG 703

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C + ++      E+   +F  +++ G    L  Y  LI   CK   +     IF  +L 
Sbjct: 704 ECKNLKV------ESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLE 757

Query: 388 SCFTPDAVTFTSLI 401
             +  D V +T L+
Sbjct: 758 KHWNSDEVAWTVLL 771



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 120/267 (44%), Gaps = 21/267 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F  M+    + P   ++N++    +KT       +   ++   GL P+  TY  
Sbjct: 534 DDALALFWKMVE-SGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTS 592

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA--LFTKLRV 188
            I+  C+ GR    F +   + +  + P+  T++SLI  LC E R  +A    L  +L  
Sbjct: 593 FIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTH 652

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           +GCE +V TY TL+ GLC  G    A  L   M           +P    Y  ++ G CK
Sbjct: 653 YGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKG------LQPSEEIYRALLIGECK 706

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                N    S +  F +++ + F   L        ++  LI  LCK + ++ A+ +FQ+
Sbjct: 707 -----NLKVESALNIFYSMDTLGFQLHLS-------DYKALICALCKENFIEEAQCIFQT 754

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMD 335
           +       + V + +L+ GL  +G+ D
Sbjct: 755 MLEKHWNSDEVAWTVLLDGLLKEGETD 781



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 51/335 (15%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           ++ P   P    NIL       K+ D+VL  F  ++    F         ++CF  M   
Sbjct: 71  HLSPKLKPHHVVNIL----QTHKNTDSVLRFFFWISRRKFFKHD------MSCFVSM--- 117

Query: 142 SHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV---FGCELDVFT 197
                 L R++R   F P       +IK    E  +       +++     FG  L  FT
Sbjct: 118 ------LNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFT 171

Query: 198 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF-L 256
             TL+  L +     +A +++ +M N          P  +T++T+I+ LCK+       L
Sbjct: 172 --TLLIQLGKFDMVDLARDMYIKMLNSG------IRPSLLTFNTMINILCKKGRVQEAKL 223

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
             S +  + A       +P          +  LI G C+   L +A  +F  + + G  P
Sbjct: 224 IMSHIFRYDA-------YPNA------FTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDP 270

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           N VTY+ LI GLC++G+++E         + + +   G+ P +YTY I +   C  G  S
Sbjct: 271 NSVTYSTLINGLCSEGRLEEAMD------MLEEMVQKGIEPTVYTYTIPLVSLCDAGCSS 324

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411
               + G++      P+  TFT+LI  L  +  F 
Sbjct: 325 EAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFE 359


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 148/303 (48%), Gaps = 28/303 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++  +   LAK K     ++L +++   G  P   TYN L+N  CKMGR+     +L 
Sbjct: 259 IHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR 318

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           +I+ +  TPD VT+TSLI  L  E R  EA  LF ++   G  LD   Y  LI GL +TG
Sbjct: 319 KIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTG 378

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSAL 267
               A ++++ M +        C PD +T ST+IDGL K    G+A  +  S  A   A 
Sbjct: 379 KIPQASSVYKTMTSHG------CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAP 432

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N++ +                LI GLCK  K+  A E+   + +A   P+ +TYNILI G
Sbjct: 433 NEVVYS--------------ALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDG 478

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G ++  + +      F  +   G  PD+YTYNILI+  CK G   +   +   +  
Sbjct: 479 LCKSGDVEAARAF------FDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSS 532

Query: 388 SCF 390
           S F
Sbjct: 533 SRF 535



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 141/306 (46%), Gaps = 34/306 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V + + +   L+K       + +FK +   GL P+   Y+ LI+  CK  ++     +
Sbjct: 397 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 456

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++ ++  TPD +T+  LI  LC    +  A A F ++   GC+ DV+TYN LI+GLC+
Sbjct: 457 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCK 516

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+T  A  + ++M++               YS+++DGLCK    +  L   CM  F  +
Sbjct: 517 AGNTDAACGVLDDMSSSR-----------FVYSSLVDGLCK----SGKLEGGCML-FHEM 560

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +        R +        LI  LCK +++  A  LF ++ + G MP+   YN +I  
Sbjct: 561 ERSGVANSQTRTR--------LIFHLCKANRVDEAVSLFNAIRKEG-MPHPYAYNSIISA 611

Query: 328 LCNDGQMDETKH-YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           L   G+++E +  Y+ +   +K        PD  TYN L+N      R+      +  + 
Sbjct: 612 LIKSGKVNEGQAVYQEMTRWWK--------PDRVTYNALLNGMIGANRMDRAHYYYLEMT 663

Query: 387 PSCFTP 392
              + P
Sbjct: 664 GRGYVP 669



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 159/409 (38%), Gaps = 107/409 (26%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR--------- 140
           V + N L    A+TK +    +L K    T   PD  T+N+LI  +C + R         
Sbjct: 119 VHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYC-LAREPEEAFAVI 177

Query: 141 ------------------VSHGFVVLGRIL---------RSCFTPDAVTFTSLIKDL--- 170
                             V HG    G++L         R      A TF+ LI  L   
Sbjct: 178 REMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKA 237

Query: 171 --------------------------------CAESRIMEAAALFTKLRVFGCELDVFTY 198
                                               +I EA AL  K+   GC   + TY
Sbjct: 238 GMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATY 297

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS-ANFLG 257
           N L+NGLC+ G    A++L  ++ + NG     C PD +TY+++IDGL KE  S   +  
Sbjct: 298 NALLNGLCKMGRLEEAIDLLRKIVD-NG-----CTPDVVTYTSLIDGLGKEKRSFEAYKL 351

Query: 258 FSCMAS---------FSAL-----------NKMAFYFPLVRVQCL--CLNFLCLIDGLCK 295
           F  MAS         ++AL              + Y  +    C+   +    +IDGL K
Sbjct: 352 FKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSK 411

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
             ++  A  +F+S+   GL PN V Y+ LI GLC   +MD          +  ++     
Sbjct: 412 AGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD------CALEMLAQMKKAFC 465

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            PD  TYNILI+  CK G V +    F  +L +   PD  T+  LI  L
Sbjct: 466 TPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGL 514



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 134/312 (42%), Gaps = 31/312 (9%)

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLT--GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           +F CL   K  D    LF+ L+    G     +T N L++ F +  R      +L   L 
Sbjct: 91  IFQCL---KDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELA 147

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV-FGCELDVFTYNTLINGLCRTGHTI 212
           + F PD  T+  LI   C      EA A+  ++   FG    + T+N +++GLC++G  +
Sbjct: 148 TIFRPDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVL 207

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A++ FE +              A T+S +I+GL K   +   +    +A  +  N    
Sbjct: 208 AAMDHFEAVRRS-------MPVSAATFSILINGLVK---AGMMIQAHSLAQETTTNGCTI 257

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  +++ L K  K++ A  L + +   G  P + TYN L+ GLC  G
Sbjct: 258 DIH---------TYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMG 308

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           +++E         L +++   G  PD+ TY  LI+   K  R    + +F  +       
Sbjct: 309 RLEE------AIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLAL 362

Query: 393 DAVTFTSLIKIL 404
           D V +T+LI+ L
Sbjct: 363 DTVCYTALIRGL 374



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 108/260 (41%), Gaps = 26/260 (10%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P    ++ L   L K +  D  L +  ++      PD  TYNILI+  CK G 
Sbjct: 425 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGD 484

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V         +L +   PD  T+  LI  LC       A  +   +         F Y++
Sbjct: 485 VEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSS-----SRFVYSS 539

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           L++GLC++G       LF EM       GV    ++ T + +I  LCK    AN +    
Sbjct: 540 LVDGLCKSGKLEGGCMLFHEMERS----GVA---NSQTRTRLIFHLCK----ANRVD-EA 587

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           ++ F+A+ K     P          +  +I  L K  K+   + ++Q + R    P+ VT
Sbjct: 588 VSLFNAIRKEGMPHPYA--------YNSIISALIKSGKVNEGQAVYQEMTR-WWKPDRVT 638

Query: 321 YNILIRGLCNDGQMDETKHY 340
           YN L+ G+    +MD   +Y
Sbjct: 639 YNALLNGMIGANRMDRAHYY 658


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 153/319 (47%), Gaps = 24/319 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  RP   SFN L   L K+++ D    L K +    ++PD +TY++LI+  CK GR+  
Sbjct: 252 RGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDV 311

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   + +    P+ +TFT+LI       R+  A   + ++   G + D+  YNTL+N
Sbjct: 312 AEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLN 371

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GLC+ G    A  L +EM        V  +PD ITY+T+IDG CKE         S M  
Sbjct: 372 GLCKVGDVNKARKLVDEMKM------VGMKPDKITYTTLIDGYCKEGDLE-----SAMEI 420

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              +N+       V        F  LI G C+  +++ A    + +  AG+ P+  TY +
Sbjct: 421 RKGMNEEGVVLDNVA-------FTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTM 473

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +I G C  G +      +  F L K +   G  P + TYN+L+N  CK G++ +  ++  
Sbjct: 474 VIDGYCKKGNV------KMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLE 527

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +L    TPD +T+  L++
Sbjct: 528 AMLNLGVTPDDITYNILLE 546



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 133/294 (45%), Gaps = 24/294 (8%)

Query: 108 TVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167
           T+ + +  +   G  P    YNILIN FCK G +    ++   I +    P  V+F +LI
Sbjct: 206 TIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLI 265

Query: 168 KDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 227
             LC    + E   L   +       DVFTY+ LI+GLC+ G   VA  LF+EM      
Sbjct: 266 NGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRG-- 323

Query: 228 FGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
                 P+ IT++ +IDG  +          S M ++  +  M     LV        + 
Sbjct: 324 ----LRPNGITFTALIDGQYRSRRMD-----SAMNTYHQMLTMGVKPDLVM-------YN 367

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L++GLCK+  +  AR+L   +   G+ P+ +TY  LI G C +G +      E+   + 
Sbjct: 368 TLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDL------ESAMEIR 421

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K +N  G+  D   +  LI+ FC+ GRV         ++ +   PD  T+T +I
Sbjct: 422 KGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVI 475



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 140/299 (46%), Gaps = 28/299 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  +FD M   R  RP   +F  L     +++  D+ ++ + ++   G+ PD   YN L+
Sbjct: 312 AEQLFDEM-QQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLL 370

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK+G V+    ++  +      PD +T+T+LI   C E  +  A  +   +   G  
Sbjct: 371 NGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVV 430

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           LD   +  LI+G CR G    A     EM     E G+  +PD  TY+ +IDG CK+   
Sbjct: 431 LDNVAFTALISGFCRDGRVRDAERTLREMV----EAGM--KPDDATYTMVIDGYCKKGNV 484

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
              +GF  +       ++  + P V      + +  L++GLCK  ++K A  L +++   
Sbjct: 485 K--MGFKLLKEM----QINGHKPGV------ITYNVLMNGLCKQGQMKNANMLLEAMLNL 532

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           G+ P+ +TYNIL+ G C +G+ ++         L K  N  GL  D   Y  L++ + K
Sbjct: 533 GVTPDDITYNILLEGHCKNGKAED---------LLKLRNEKGLIVDYAYYTSLVSEYNK 582


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 166/360 (46%), Gaps = 50/360 (13%)

Query: 72  EALCVFDYMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +A  +FD M    PS+   P + SF+ L G L+K    D  L  F+ +   GL PD   Y
Sbjct: 377 DAERIFDEM----PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIY 432

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            ILI  FC+ G +S    V   +L      D VT+ +++  LC E  + EA  LFT++  
Sbjct: 433 TILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTE 492

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   D +T+ TLING  + G+   A+ LFE M   N       +PD +TY+T+IDG CK
Sbjct: 493 RGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN------LKPDVVTYNTLIDGFCK 546

Query: 249 --EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC------------------ 288
             E    N L ++ M S         Y  L+   C   N  C                  
Sbjct: 547 GSEMEKVNEL-WNDMISRRIYPNHISYGILINGYC---NMGCVSEAFRLWDEMVEKGFEA 602

Query: 289 -------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
                  ++ G C+      A E   ++   G++P+ +TYN LI G   +  MD      
Sbjct: 603 TIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDR----- 657

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             F L  ++ ++GL PD+ TYN+++N F + GR+    +I  +++     PD  T+TSLI
Sbjct: 658 -AFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLI 716



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 150/335 (44%), Gaps = 35/335 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + + N L G L K    D    +++ +  +G+  + YT NI+IN  CK  ++ +    L 
Sbjct: 219 INACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLS 278

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      PD VT+ +LI   C +  + EA  L   +   G +  VFTYN +INGLC+TG
Sbjct: 279 DMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG 338

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYST----------------IIDGLCKEAGSA 253
             + A  + +EM        +   PD  TY+                 I D +  +    
Sbjct: 339 KYLRAKGVLDEM------LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVP 392

Query: 254 NFLGFSCMASFSA----LNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELF 306
           + + FS +    +    L++   YF  ++   L  +   +  LI G C+   +  A ++ 
Sbjct: 393 DLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVR 452

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G + +VVTYN ++ GLC +  + E         LF  +   G+FPD YT+  LI
Sbjct: 453 DEMLEQGCVLDVVTYNTILNGLCKEKMLSEADE------LFTEMTERGVFPDFYTFTTLI 506

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N + K G ++    +F  ++     PD VT+ +LI
Sbjct: 507 NGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLI 541



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 153/346 (44%), Gaps = 51/346 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L     +    +    L   ++  GL P  +TYN +IN  CK G+      V
Sbjct: 287 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 346

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L+   +PD  T+  L+ + C    +M+A  +F ++   G   D+ +++ LI  L +
Sbjct: 347 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 406

Query: 208 TGHTIVALNLFEEMANGN------------GEF---GVVCEP--------------DAIT 238
            G    AL  F +M N              G F   GV+ E               D +T
Sbjct: 407 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVT 466

Query: 239 YSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           Y+TI++GLCKE     A+ L F+ M          FY            F  LI+G  K 
Sbjct: 467 YNTILNGLCKEKMLSEADEL-FTEMTERGVFPD--FY-----------TFTTLINGYSKD 512

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
             +  A  LF+ + +  L P+VVTYN LI G C   +M      E V  L+  + S  ++
Sbjct: 513 GNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEM------EKVNELWNDMISRRIY 566

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           P+  +Y ILIN +C +G VS  F ++  ++   F    +T  +++K
Sbjct: 567 PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVK 612



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 108/255 (42%), Gaps = 24/255 (9%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           + + F  L++      ++ E    F  L+  G  + +   N+L+ GL + G   +A  ++
Sbjct: 183 NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 242

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
           +E+     +  V       T + +I+ LCK     N        SF +  +    FP V 
Sbjct: 243 QEVVRSGVQVNVY------TLNIMINALCKNQKIEN------TKSFLSDMEEKGVFPDV- 289

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                + +  LI+  C+   L+ A EL  S+   GL P V TYN +I GLC  G+    K
Sbjct: 290 -----VTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAK 344

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  +   +   G+ PD  TYNIL+   C+   +     IF  +      PD V+F+
Sbjct: 345 G------VLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFS 398

Query: 399 SLIKILEINSFFRQV 413
           +LI +L  N    Q 
Sbjct: 399 ALIGLLSKNGCLDQA 413



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 42/210 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A+ +F+ M+  R  +P V ++N L     K    + V  L+  +    ++P+  +Y I
Sbjct: 516 NKAVTLFEMMIQ-RNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGI 574

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCF---------------------------------- 156
           LIN +C MG VS  F +   ++   F                                  
Sbjct: 575 LINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG 634

Query: 157 -TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             PD +T+ +LI     E  +  A AL  K+   G   DV TYN ++NG  R G    A 
Sbjct: 635 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAE 694

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
            +  +M     E GV   PD  TY+++I+G
Sbjct: 695 LIMLKMI----ERGV--NPDRSTYTSLING 718



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%)

Query: 118 LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177
           L G+ PD  TYN LIN F K   +   F ++ ++  S   PD +T+  ++     + R+ 
Sbjct: 632 LKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQ 691

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           EA  +  K+   G   D  TY +LING     +   A  + +EM
Sbjct: 692 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEM 735



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L     K ++ D   +L  ++  +GL PD  TYN+++N F + GR+    ++
Sbjct: 637 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 696

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           + +++     PD  T+TSLI     ++ + EA
Sbjct: 697 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEA 728


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 153/314 (48%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N +     +    D  L   K +N   + PD +TYNILI+  CK  +      +
Sbjct: 224 PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEM 283

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++    TPD VTF S++  LC   +   A +L   +    C     TYNTLI+GLC+
Sbjct: 284 LHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCK 343

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
             +   A +L +E  +     G V  PD +TYS + DGLCK              +F  +
Sbjct: 344 QQNVDRAKDLVDEFVSS----GFV--PDVVTYSILADGLCKRG--------RIDEAFELV 389

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +M+       +    + +  LIDGLCK SK + A EL +SL  +G +P+VVTY I++ G
Sbjct: 390 KEMSGKGCTPNL----VTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDG 445

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC +G++D  K  + V  + KR    G  P + TY  L+   C+ GRV     IF  ++ 
Sbjct: 446 LCKEGRLD--KALKMVEGMLKR----GCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVS 499

Query: 388 SCFTPDAVTFTSLI 401
              T DA+ + SL+
Sbjct: 500 KDCTADALAYVSLV 513



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 155/329 (47%), Gaps = 29/329 (8%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F+ ML+   + P   +++++   L +    D   ++  +  + G  P+   Y IL   F
Sbjct: 147 MFERMLDAGYA-PDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAF 205

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK GR+         I R+  +PDA+ + ++I   C ++    A     ++       DV
Sbjct: 206 CKTGRLKDAL----EIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDV 261

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           FTYN LI+GLC+   T  A  +  EM +     GV   PD +T+++I+DGLCK       
Sbjct: 262 FTYNILIDGLCKASKTDKASEMLHEMVD----RGVT--PDTVTFNSIMDGLCK------- 308

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                   F   + +         +  C  +  LI GLCK   +  A++L      +G +
Sbjct: 309 -----AGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFV 363

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+VVTY+IL  GLC  G++DE       F L K ++  G  P+L TYN LI+  CK  + 
Sbjct: 364 PDVVTYSILADGLCKRGRIDE------AFELVKEMSGKGCTPNLVTYNTLIDGLCKASKT 417

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              + +   ++ S F PD VT+T ++  L
Sbjct: 418 EKAYELLESLVSSGFVPDVVTYTIIVDGL 446



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 154/339 (45%), Gaps = 34/339 (10%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  RP   ++N L   L K ++ D    L      +G  PD  TY+IL +  CK GR+  
Sbjct: 325 RNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDE 384

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
            F ++  +     TP+ VT+ +LI  LC  S+  +A  L   L   G   DV TY  +++
Sbjct: 385 AFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVD 444

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCM 261
           GLC+ G    AL + E M          C P  ITY+ +++GLC+      A+ + F  M
Sbjct: 445 GLCKEGRLDKALKMVEGMLKRG------CTPSVITYTALMEGLCRTGRVDEAHHI-FKEM 497

Query: 262 ASFSALNKMAFYFPLVRVQCLCLN-------------------FLCLIDGLCKISKLKIA 302
            S         Y  LV   C                       +  L+DG CK  +L   
Sbjct: 498 VSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEI 557

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
             +F+ +   G +PN+ TYNI++ GLC  G++DE       F   + ++S G  PD+ +Y
Sbjct: 558 PNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDE------AFPFLESMHSAGCVPDVVSY 611

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           NI+I+   K  +      +  +++ +   PDAVT+ +L+
Sbjct: 612 NIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLM 650



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 140/298 (46%), Gaps = 24/298 (8%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +N R   P V ++NIL   L K    D    +   +   G+ PD  T+N +++  CK G+
Sbjct: 252 MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 311

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +L  +      P   T+ +LI  LC +  +  A  L  +    G   DV TY+ 
Sbjct: 312 FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSI 371

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           L +GLC+ G    A  L +EM+ G G     C P+ +TY+T+IDGLCK + +     +  
Sbjct: 372 LADGLCKRGRIDEAFELVKEMS-GKG-----CTPNLVTYNTLIDGLCKASKTEK--AYEL 423

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           + S  +    + + P V      + +  ++DGLCK  +L  A ++ + + + G  P+V+T
Sbjct: 424 LESLVS----SGFVPDV------VTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVIT 473

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           Y  L+ GLC  G++DE  H      +FK + S     D   Y  L+N +CK  R    
Sbjct: 474 YTALMEGLCRTGRVDEAHH------IFKEMVSKDCTADALAYVSLVNGYCKSSRTKEA 525



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 157/371 (42%), Gaps = 58/371 (15%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EG +  I PN    VF+ M   R   P + ++NI+   L K    D      + ++  G 
Sbjct: 551 EGRLDEI-PN----VFEDMA-CRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGC 604

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  +YNI+I+   K  +      VL +++++   PDAVT+ +L+   C E R  +A  
Sbjct: 605 VPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVG 664

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +   +   G + D  TYNTLI+GL +T     A  L  EM   NG     C     TY+T
Sbjct: 665 ILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLR-NGCVVSAC----TTYNT 719

Query: 242 IIDGLCKEAGSANFLGFSCM-ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           IID LCKE          C+  +   ++ M  +     V+   + +   ID LCK  +L 
Sbjct: 720 IIDRLCKEG---------CLKQALLLMDHMTGH----GVEANTVTYNIFIDRLCKEGRLD 766

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD------------------------- 335
            A  L   +     + + V+Y  +I GLC   Q+D                         
Sbjct: 767 EASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLL 823

Query: 336 -----ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
                +TK  +    L   +   G  P + TYN++I C CK+ +V   + +F  +     
Sbjct: 824 IDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGI 883

Query: 391 TPDAVTFTSLI 401
              +V++T LI
Sbjct: 884 VASSVSYTVLI 894



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 148/347 (42%), Gaps = 50/347 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P +  +N L     K    D + ++F+ +   G  P+  TYNI+++  CK G+V   F  
Sbjct: 536 PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPF 595

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +  +   PD V++  +I  L   S+  EA  +  ++   G   D  TYNTL+   C+
Sbjct: 596 LESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCK 655

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A+ + + M       GV  +PD +TY+T+I GL +     N LG          
Sbjct: 656 EERFDDAVGILKNMIKA----GV--DPDNVTYNTLISGLSQ----TNRLG---------- 695

Query: 268 NKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           +       ++R  C+   C  +  +ID LCK   LK A  L   +   G+  N VTYNI 
Sbjct: 696 DAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIF 755

Query: 325 IRGLCNDGQMDETK-------------HYETVF--------------LLFKRLNSTGLFP 357
           I  LC +G++DE                Y TV               L  + +   GL  
Sbjct: 756 IDRLCKEGRLDEASSLLSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCI 815

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             +T+N+LI+ F K  R+     + G ++    +P  +T+  +I  L
Sbjct: 816 TSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCL 862



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 133/301 (44%), Gaps = 35/301 (11%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G   +  P EA  V D M+      P   ++N L     K + +D  + + K +   G+
Sbjct: 616 DGLFKASKPKEARQVLDQMIQAGIP-PDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGV 674

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAA 180
            PD  TYN LI+   +  R+   + ++  +LR+ C      T+ ++I  LC E  + +A 
Sbjct: 675 DPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQAL 734

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
            L   +   G E +  TYN  I+ LC+ G    A +L  EM             D ++Y+
Sbjct: 735 LLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR---------DEVSYT 785

Query: 241 TIIDGLCK--EAGSANFLGFSCMA----------------SFSALNKMAFYFPLV--RVQ 280
           T+I GLCK  +   A+ L    +A                +F+   ++     L+   VQ
Sbjct: 786 TVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQ 845

Query: 281 CLC----LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
             C    + +  +I  LCK+ K+  A ELF  +   G++ + V+Y +LI GLC  G+  E
Sbjct: 846 RGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKE 905

Query: 337 T 337
            
Sbjct: 906 A 906



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGR 140
            M   R  V+   ++ G L K +  D    L + +  + GL    +T+N+LI+ F K  R
Sbjct: 774 EMDTLRDEVSYTTVIIG-LCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKR 832

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     +LG +++   +P  +T+  +I  LC   ++ +A  LF ++ V G      +Y  
Sbjct: 833 LDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTV 892

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           LI GLC  G    AL + EEMA+ +      CE D + +  +
Sbjct: 893 LIYGLCGQGRGKEALQVLEEMASSD------CEIDDLKWEDV 928



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +   M+  R   P V ++N++  CL K    D    LF  + + G+     +Y +
Sbjct: 834 DEALTLLGLMVQ-RGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTV 892

Query: 131 LINCFCKMGRVSHGFVVLGRILRS 154
           LI   C  GR      VL  +  S
Sbjct: 893 LIYGLCGQGRGKEALQVLEEMASS 916



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G   +  T N  ++ L  +G  D       +  +F+R+   G  PD YTY+++I   C++
Sbjct: 120 GFKHSTFTRNCFLQTLLENGSSDR------IPAMFERMLDAGYAPDSYTYHLVIKSLCQM 173

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            ++   F +  +     F P+   +T L +
Sbjct: 174 NQIDKAFTMLDKAKVRGFKPEVSVYTILTR 203


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 163/361 (45%), Gaps = 55/361 (15%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N +   LAK  H    L +   +      P   TY IL+N  CK G +     +
Sbjct: 258 PDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEEL 317

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +  S F P++V +TSLI       R+ EA +LF ++   G   DV T+  +I+GLC+
Sbjct: 318 FRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCK 377

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +G+   A   FEEM  G       C+P+ +TY+TII GL K    AN        +F  +
Sbjct: 378 SGNFEQAAKSFEEMMRGG------CKPNVVTYTTIIQGLSKIGRVAN--------AFRIM 423

Query: 268 NKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             M  +  FP        + ++CL+DG CK+ +L  A +L   L +    PN+  Y+ L+
Sbjct: 424 KGMIAHGCFP------DSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLV 477

Query: 326 RGLCNDGQMD------------------------------ETKHYETVFLLFKRLNSTGL 355
           +GLC+ G ++                              +T   +    +F+R+ S G 
Sbjct: 478 KGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGC 537

Query: 356 FPDLYTYNILINCFCKI--GRVSSGFVIFGRILPSCFTPDAVTFTSL-IKILEINSFFRQ 412
            PD  TYNILIN  C+    RV   F +   +    + PDAVT+T L I + +I    R 
Sbjct: 538 KPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRA 597

Query: 413 V 413
           V
Sbjct: 598 V 598



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 158/343 (46%), Gaps = 40/343 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   SFNIL    A+T+  D  ++ F+ +      PD +T+ IL++C CK G     F V
Sbjct: 152 PNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEV 211

Query: 148 LGRILRSCFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              ++   F P D    T++++ L    R+ EA  +F ++   G   D   YNT+I+GL 
Sbjct: 212 FHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLA 271

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS---ANFLGFSCMAS 263
           + GH   AL + + M          C P  +TY  +++ LCK AG+   A  L F  MA+
Sbjct: 272 KAGHAQEALKVLDNM------LAKACVPTEVTYGILVNSLCK-AGTLERAEEL-FRVMAA 323

Query: 264 FSALNKMAFYFPLV-------RVQCLC---------------LNFLCLIDGLCKISKLKI 301
                    Y  L+       R++  C               +    +IDGLCK    + 
Sbjct: 324 SGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQ 383

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A + F+ + R G  PNVVTY  +I+GL   G++         F + K + + G FPD  T
Sbjct: 384 AAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRV------ANAFRIMKGMIAHGCFPDSVT 437

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           Y  L++ FCK+GR+     +   +     +P+   ++SL+K L
Sbjct: 438 YICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGL 480



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 152/355 (42%), Gaps = 37/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL V D ML  +   P   ++ IL   L K    +    LF+ +  +G  P+   Y  
Sbjct: 277 QEALKVLDNML-AKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTS 335

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F K GR+     +   ++ + + PD +T T +I  LC      +AA  F ++   G
Sbjct: 336 LIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGG 395

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCK- 248
           C+ +V TY T+I GL + G    A  + + M A+G       C PD++TY  ++DG CK 
Sbjct: 396 CKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHG-------CFPDSVTYICLLDGFCKL 448

Query: 249 ----EAG-----------SANFLGFSCMA-----SFSALNKMAFYFPLVRVQCLCLN-FL 287
               EA            S N   +S +        S  N +   F   +     L+  L
Sbjct: 449 GRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGL 508

Query: 288 C--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           C  +I GLCK  +L  A  +FQ +   G  P+  TYNILI GLC   +       E  F 
Sbjct: 509 CCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRE----NRVERAFA 564

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           L   L   G  PD  TY  L    CKIG V     +        +  D V +T+L
Sbjct: 565 LLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTAL 619



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 155/369 (42%), Gaps = 68/369 (18%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+  F +       +  V ++N L   L   K+Y    ++ + +   G+ P+ +++NILI
Sbjct: 102 AISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILI 161

Query: 133 -----------------------------------NCFCKMGRVSHGFVVLGRILRSCFT 157
                                              +C CK G     F V   ++   F 
Sbjct: 162 RSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFV 221

Query: 158 -PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
            PD    T++++ L    R+ EA  +F ++   G   D   YNT+I+GL + GH   AL 
Sbjct: 222 PPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALK 281

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           + + M          C P  +TY  +++ LCK AG+              L +    F +
Sbjct: 282 VLDNM------LAKACVPTEVTYGILVNSLCK-AGT--------------LERAEELFRV 320

Query: 277 VRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
           +       N   +  LI G  K  ++K A  LF  +  AG  P+V+T+ ++I GLC  G 
Sbjct: 321 MAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSG- 379

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF-GRILPSCFTP 392
                ++E     F+ +   G  P++ TY  +I    KIGRV++ F I  G I   CF P
Sbjct: 380 -----NFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCF-P 433

Query: 393 DAVTFTSLI 401
           D+VT+  L+
Sbjct: 434 DSVTYICLL 442



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 159/365 (43%), Gaps = 49/365 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  +FD M+     RP V +  ++   L K+ +++     F+ +   G  P+  TY  
Sbjct: 347 KEACSLFDEMVEA-GYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTT 405

Query: 131 LINCFCKMGRVSHGFVVL-GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +I    K+GRV++ F ++ G I   CF PD+VT+  L+   C   R+ EAA L  +L   
Sbjct: 406 IIQGLSKIGRVANAFRIMKGMIAHGCF-PDSVTYICLLDGFCKLGRLDEAAQLLDELDKC 464

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALN-LFEE--MANGNGEFGVVC-------------- 232
               ++  Y++L+ GLC  G     L+ LFE+   A  N + G+ C              
Sbjct: 465 SSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDE 524

Query: 233 -------------EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
                        +PDA TY+ +I+GLC+   +     F+ +       +M  Y P    
Sbjct: 525 ACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDL----EMVGYLP---- 576

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
             +    LC+  GLCKI ++  A ++ +     G   +VV Y  L  GLC  GQ+D    
Sbjct: 577 DAVTYTPLCI--GLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRA-- 632

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
                 LF+ +   G  PD   Y  +IN   K  ++      F  ++     P   T+T+
Sbjct: 633 ----VSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTA 688

Query: 400 LIKIL 404
           L++ L
Sbjct: 689 LVQAL 693



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 157/376 (41%), Gaps = 74/376 (19%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++  +   L+K         + K +   G FPD  TY  L++ FCK+GR+     
Sbjct: 397 KPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQ 456

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLC-------------------AES------------- 174
           +L  + +   +P+   ++SL+K LC                   AE+             
Sbjct: 457 LLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGL 516

Query: 175 ----RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV--ALNLFEEMANGNGEF 228
               R+ EA  +F ++   GC+ D  TYN LINGLCR+    V  A  L  ++       
Sbjct: 517 CKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEM----- 571

Query: 229 GVVCEPDAITYSTIIDGLCK-----------EAGSANFLGFSCMASFSALNKMAFYFPLV 277
            V   PDA+TY+ +  GLCK           E  S+       +A  +    + +   + 
Sbjct: 572 -VGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVD 630

Query: 278 RVQCL------------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           R   L               + C+I+GL K  KL+ A + F  +   G  P V TY  L+
Sbjct: 631 RAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALV 690

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTG-LFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + LC+ G +DE  H       F+ + + G L   +  Y+ LI+ FCK  +V +   +F  
Sbjct: 691 QALCHAGNVDEAFHR------FEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFED 744

Query: 385 ILPSCFTPDAVTFTSL 400
           ++     P AVT  SL
Sbjct: 745 MISRGNVPTAVTSASL 760



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 129/299 (43%), Gaps = 26/299 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFG--CLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +EA  +F  M++    +P  T++NIL    C ++    +   +L   L + G  PD  TY
Sbjct: 523 DEACRIFQRMVS-EGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTY 581

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
             L    CK+G V     +L       +  D V +T+L   LC + ++  A +LF ++  
Sbjct: 582 TPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVR 641

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   D   Y  +INGL +      A   F+EM  G G+     +P   TY+ ++  LC 
Sbjct: 642 QGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMI-GKGQ-----KPTVATYTALVQALC- 694

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
            AG+ +        +F     M     LV      + +  LI G CK  K+  A +LF+ 
Sbjct: 695 HAGNVD-------EAFHRFEGMLARGELVGS---VMIYDALIHGFCKALKVDAALKLFED 744

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           +   G +P  VT   L  GL   G+ ++ +       L + + + G  P   T+  +++
Sbjct: 745 MISRGNVPTAVTSASLFDGLVRSGKTEKAQE------LLQEMAAGGSPPHAATFTAILD 797



 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 2/145 (1%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYTYNILINCF 135
           FD M+  +  +P V ++  L   L    + D     F+ +   G L      Y+ LI+ F
Sbjct: 671 FDEMIG-KGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGF 729

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK  +V     +   ++     P AVT  SL   L    +  +A  L  ++   G     
Sbjct: 730 CKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHA 789

Query: 196 FTYNTLINGLCRTGHTIVALNLFEE 220
            T+  +++GL ++  +   L L +E
Sbjct: 790 ATFTAILDGLRKSDESGKLLKLVQE 814


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 128/457 (28%), Positives = 196/457 (42%), Gaps = 105/457 (22%)

Query: 42  TVKDRA-SLEQFLKERCKSSGEGDITSITPNEALCVFDYML-NMRPSRPPVTSFNILFGC 99
            V+DR   LE+ + +R +S       S+   +AL +FD +L + RP+   V +FN L   
Sbjct: 7   AVRDRCLELERVIADRARSG------SLGLGDALKLFDELLPHARPA--SVVAFNHLLAA 58

Query: 100 LAK-------TKHYDTVLSLFKRLN---LTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           +++       T   +TV+SLF R+       + P+R TY+ILI CFC+MG + HGF   G
Sbjct: 59  VSRSSGRRSTTSESETVVSLFNRMVRDCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFG 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAA-ALFTKLRVFGCELDVFTYNTLINGLCRT 208
            IL++ +  D +    L+  LC   R+ EA   L  ++   GC  D  +YN L+ GLC  
Sbjct: 119 LILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNE 178

Query: 209 GHTIVALNLFEEMANG----------------NGEF--GVVCE--------------PDA 236
                AL L   MA+                 NG F  G V +              PD 
Sbjct: 179 KRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDV 238

Query: 237 ITYSTIIDGLCK----EAGSANFL-------------------GFSCMASFSALNKMAFY 273
           +TY+T+IDGLCK    +   A F                    G+  +  +  + +M   
Sbjct: 239 VTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEE 298

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
                 +  C  +  L++ LCK  + + AR  F S+   G+ P+V TY I++ G    G 
Sbjct: 299 MSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGA 358

Query: 334 MDE---------------TKHYETVFL--------------LFKRLNSTGLFPDLYTYNI 364
           + E                 H   +F               +F ++   GL PD  +Y  
Sbjct: 359 LSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGA 418

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LI+  CK+GRV    V F +++    TPD V F+SL+
Sbjct: 419 LIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLV 455



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 154/352 (43%), Gaps = 59/352 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    FNI F   AK    D  + +F ++   GL PD  +Y  LI+  CK+GRV    V 
Sbjct: 376 PNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVK 435

Query: 148 LGRILRSCFTPDAVTFTSLIK-----------------------------------DLCA 172
             +++    TPD V F+SL+                                    +LC 
Sbjct: 436 FNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCK 495

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           E R+ME   L   +   G   DV +YNTLI+G C  G    A  L E M +      V  
Sbjct: 496 EGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVS------VGL 549

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
           +PD+ +Y+T++ G CK AG  +       +++S   KM        +    + +  ++ G
Sbjct: 550 KPDSFSYNTLLHGYCK-AGRID-------SAYSHFRKMLSN----GITPGVVTYNTILHG 597

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           L +  +   A+EL+ ++  +G   ++ TYNI++ GLC    +DE         +F+ L S
Sbjct: 598 LFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEA------IKMFQNLCS 651

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            GL  ++ T+NI+I    K GR      +F  I  +    + VT+  +++ L
Sbjct: 652 KGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENL 703



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 150/366 (40%), Gaps = 56/366 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA   FD M+  +  +P VT++ I+    A       +  L   +   G+ P+ + +NI 
Sbjct: 326 EARFFFDSMIG-KGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIF 384

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
            + + K G +     +  ++ +   +PDAV++ +LI  LC   R+ +A   F ++   G 
Sbjct: 385 FSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGV 444

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA- 250
             D+  +++L+ GLC          LF EM N      V   P+ + ++TI+  LCKE  
Sbjct: 445 TPDIVVFSSLVYGLCTVDKWEKVEELFFEMLN------VGIHPNIVFFNTILCNLCKEGR 498

Query: 251 ---GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
              G        CM               VR   +  N   LIDG C    +  A +L +
Sbjct: 499 VMEGQRLVDSIECMG--------------VRPDVISYN--TLIDGHCLAGTIDEASKLLE 542

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMD-----------------------------ETK 338
            +   GL P+  +YN L+ G C  G++D                             +TK
Sbjct: 543 GMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTK 602

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
            +     L+  + ++G   D+YTYNI++N  CK   V     +F  +       + +TF 
Sbjct: 603 RFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFN 662

Query: 399 SLIKIL 404
            +I  L
Sbjct: 663 IMIGAL 668



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 143/318 (44%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   ++  L   L K          F  +   G+ P   TY I+++ +   G +S    
Sbjct: 305 KPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHD 364

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++ +  +P+   F            I +A  +F K+R  G   D  +Y  LI+ LC
Sbjct: 365 LLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALC 424

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A   F +M N     GV   PD + +S+++ GLC             +  +  
Sbjct: 425 KLGRVDDAEVKFNQMINE----GVT--PDIVVFSSLVYGLC------------TVDKWEK 466

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           + ++ F    V +    + F  ++  LCK  ++   + L  S+   G+ P+V++YN LI 
Sbjct: 467 VEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLID 526

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C  G +DE         L + + S GL PD ++YN L++ +CK GR+ S +  F ++L
Sbjct: 527 GHCLAGTIDEASK------LLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKML 580

Query: 387 PSCFTPDAVTFTSLIKIL 404
            +  TP  VT+ +++  L
Sbjct: 581 SNGITPGVVTYNTILHGL 598



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 156/363 (42%), Gaps = 38/363 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A   F+ M+N     P +  F+ L   L     ++ V  LF  +   G+ P+   +N 
Sbjct: 430 DDAEVKFNQMIN-EGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNT 488

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++   CK GRV  G  ++  I      PD +++ +LI   C    I EA+ L   +   G
Sbjct: 489 ILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVG 548

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGL--C 247
            + D F+YNTL++G C+ G    A + F +M +NG         P  +TY+TI+ GL   
Sbjct: 549 LKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNG-------ITPGVVTYNTILHGLFQT 601

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRV-------------QCLC--------LNF 286
           K    A  L  + + S +  +   +   L  +             Q LC        + F
Sbjct: 602 KRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITF 661

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             +I  L K  + + A +LF ++P  GL+ NVVTY +++  L  +G ++E         L
Sbjct: 662 NIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDS------L 715

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406
           F  +   G  P+    N L+      G +S       ++    F+ +A T + LI I   
Sbjct: 716 FSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSS 775

Query: 407 NSF 409
           + +
Sbjct: 776 DEY 778



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 135/328 (41%), Gaps = 18/328 (5%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +   L +TK +     L+  +  +G   D YTYNI++N  CK   V     +
Sbjct: 586 PGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKM 645

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +       + +TF  +I  L    R  +A  LF  +   G   +V TY  ++  L  
Sbjct: 646 FQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIE 705

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS----ANFLGFSCMAS 263
            G      +LF  M   NG        +A+    +  G    AG+     +   FS  AS
Sbjct: 706 EGSLEEFDSLFSAMEK-NGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEAS 764

Query: 264 FSAL-------NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
            +++       ++   +   +  +   LN       + K  ++  A  LF+ +   GL P
Sbjct: 765 TTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDDAYSLFREMLMKGLTP 824

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           +VVTYN ++ GL   G+  E K      L    +NS     ++YTYNI++N  CK   V 
Sbjct: 825 DVVTYNTILHGLFQTGRFSEAKE-----LYLSMINSRTQM-NIYTYNIILNGLCKSNCVD 878

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             F +F  +       + +TF  +I  L
Sbjct: 879 EAFKMFQSLCSKGLQLNIITFNIMIGAL 906



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 142/343 (41%), Gaps = 54/343 (15%)

Query: 90   VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
            V ++ ++   L +    +   SLF  +   G  P+    N L+      G +S     L 
Sbjct: 693  VVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLS 752

Query: 150  RILRSCFTPDAVTFTSLIKDLCAES----------------------------RIMEAAA 181
            ++    F+ +A T + LI    ++                             RI +A +
Sbjct: 753  KLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDDAYS 812

Query: 182  LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
            LF ++ + G   DV TYNT+++GL +TG    A  L+  M N   +  +       TY+ 
Sbjct: 813  LFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIY------TYNI 866

Query: 242  IIDGLCKEA-GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
            I++GLCK       F  F  + S               +Q   + F  +I  L K  + +
Sbjct: 867  ILNGLCKSNCVDEAFKMFQSLCSKG-------------LQLNIITFNIMIGALLKGGRKE 913

Query: 301  IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
             A +LF ++P  GL+P+VVTY ++   L  +G ++E   ++ +FL  ++   +G   D  
Sbjct: 914  DAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEE---FDGLFLTMEK---SGTPLDSR 967

Query: 361  TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
              N L+    + G +S       ++    F+ +A T + LI +
Sbjct: 968  LLNALVRRLLQRGDISRAGAYLSKLDEKNFSLEASTTSELISL 1010



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  ++  M+N R ++  + ++NI+   L K+   D    +F+ L   GL  +  T+NI
Sbjct: 843 SEAKELYLSMINSR-TQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNI 901

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I    K GR      +   I  +   PD VT+  + ++L  E  + E   LF  +   G
Sbjct: 902 MIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSG 961

Query: 191 CELDVFTYNTLINGLCRTG 209
             LD    N L+  L + G
Sbjct: 962 TPLDSRLLNALVRRLLQRG 980


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 166/360 (46%), Gaps = 50/360 (13%)

Query: 72  EALCVFDYMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +A  +FD M    PS+   P + SF+ L G L+K    D  L  F+ +   GL PD   Y
Sbjct: 220 DAERIFDEM----PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIY 275

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            ILI  FC+ G +S    V   +L      D VT+ +++  LC E  + EA  LFT++  
Sbjct: 276 TILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTE 335

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   D +T+ TLING  + G+   A+ LFE M   N       +PD +TY+T+IDG CK
Sbjct: 336 RGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN------LKPDVVTYNTLIDGFCK 389

Query: 249 --EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC------------------ 288
             E    N L ++ M S         Y  L+   C   N  C                  
Sbjct: 390 GSEMEKVNEL-WNDMISRRIYPNHISYGILINGYC---NMGCVSEAFRLWDEMVEKGFEA 445

Query: 289 -------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
                  ++ G C+      A E   ++   G++P+ +TYN LI G   +  MD      
Sbjct: 446 TIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRA---- 501

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             F L  ++ ++GL PD+ TYN+++N F + GR+    +I  +++     PD  T+TSLI
Sbjct: 502 --FALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLI 559



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 149/335 (44%), Gaps = 35/335 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + + N L G L K    D    +++ +  +G+  + YT NI+IN  CK  ++ +    L 
Sbjct: 62  INACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLS 121

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      PD VT+ +LI   C +  + EA  L   +   G +  VFTYN +INGLC+TG
Sbjct: 122 DMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG 181

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYST----------------IIDGLCKEAGSA 253
             + A  + +EM        +   PD  TY+                 I D +  +    
Sbjct: 182 KYLRAKGVLDEM------LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVP 235

Query: 254 NFLGFSCMASF----SALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELF 306
           + + FS +         L++   YF  ++   L  +   +  LI G C+   +  A ++ 
Sbjct: 236 DLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVR 295

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G + +VVTYN ++ GLC +  + E         LF  +   G+FPD YT+  LI
Sbjct: 296 DEMLEQGCVLDVVTYNTILNGLCKEKMLSEADE------LFTEMTERGVFPDFYTFTTLI 349

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N + K G ++    +F  ++     PD VT+ +LI
Sbjct: 350 NGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLI 384



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 153/346 (44%), Gaps = 51/346 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L     +    +    L   ++  GL P  +TYN +IN  CK G+      V
Sbjct: 130 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 189

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L+   +PD  T+  L+ + C    +M+A  +F ++   G   D+ +++ LI  L +
Sbjct: 190 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 249

Query: 208 TGHTIVALNLFEEMANGN------------GEF---GVVCEP--------------DAIT 238
            G    AL  F +M N              G F   GV+ E               D +T
Sbjct: 250 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVT 309

Query: 239 YSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           Y+TI++GLCKE     A+ L F+ M          FY            F  LI+G  K 
Sbjct: 310 YNTILNGLCKEKMLSEADEL-FTEMTERGVFPD--FY-----------TFTTLINGYSKD 355

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
             +  A  LF+ + +  L P+VVTYN LI G C   +M      E V  L+  + S  ++
Sbjct: 356 GNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEM------EKVNELWNDMISRRIY 409

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           P+  +Y ILIN +C +G VS  F ++  ++   F    +T  +++K
Sbjct: 410 PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVK 455



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 24/254 (9%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           + + F  L++      ++ E    F  L+  G  + +   N+L+ GL + G   +A  ++
Sbjct: 26  NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 85

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
           +E+     +  V       T + +I+ LCK     N        SF +  +    FP V 
Sbjct: 86  QEVVRSGVQVNVY------TLNIMINALCKNQKIEN------TKSFLSDMEEKGVFPDV- 132

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                + +  LI+  C+   L+ A EL  S+   GL P V TYN +I GLC  G+    K
Sbjct: 133 -----VTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAK 187

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  +   +   G+ PD  TYNIL+   C+   +     IF  +      PD V+F+
Sbjct: 188 G------VLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFS 241

Query: 399 SLIKILEINSFFRQ 412
           +LI +L  N    Q
Sbjct: 242 ALIGLLSKNGCLDQ 255



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 50/214 (23%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A+ +F+ M+  R  +P V ++N L     K    + V  L+  +    ++P+  +Y I
Sbjct: 359 NKAVTLFEMMIQ-RNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGI 417

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCF---------------------------------- 156
           LIN +C MG VS  F +   ++   F                                  
Sbjct: 418 LINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG 477

Query: 157 -TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH----T 211
             PD +T+ +LI     E  +  A AL  K+   G   DV TYN ++NG  R G      
Sbjct: 478 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAE 537

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           ++ L + E   N          PD  TY+++I+G
Sbjct: 538 LIMLKMIERGVN----------PDRSTYTSLING 561



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%)

Query: 118 LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177
           L G+ PD  TYN LIN F K   +   F ++ ++  S   PD +T+  ++     + R+ 
Sbjct: 475 LKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQ 534

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           EA  +  K+   G   D  TY +LING     +   A  + +EM
Sbjct: 535 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEM 578



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L     K ++ D   +L  ++  +GL PD  TYN+++N F + GR+    ++
Sbjct: 480 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 539

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           + +++     PD  T+TSLI     ++ + EA
Sbjct: 540 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEA 571


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 162/361 (44%), Gaps = 55/361 (15%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N +   LAK  H    L +   +      P   TY IL+N  CK G +     +
Sbjct: 258 PDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEEL 317

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +  S F P++V +TSLI       R+ EA +LF ++   G   DV T+  +I+GLC+
Sbjct: 318 FRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCK 377

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +G+   A   FEEM  G       C+P+ +TY+TII GL K    AN        +F  +
Sbjct: 378 SGNFEQAAKSFEEMMRGG------CKPNVVTYTTIIQGLSKIGRVAN--------AFRIM 423

Query: 268 NKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             M  +  FP        + ++CL+DG CK+ +L  A +L   L +    PN+  Y+ L+
Sbjct: 424 KGMIAHGCFP------DSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLV 477

Query: 326 RGLCNDGQMD------------------------------ETKHYETVFLLFKRLNSTGL 355
            GLC+ G ++                              +T   +    +F+R+ S G 
Sbjct: 478 NGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGC 537

Query: 356 FPDLYTYNILINCFCKI--GRVSSGFVIFGRILPSCFTPDAVTFTSL-IKILEINSFFRQ 412
            PD  TYNILIN  C+    RV   F +   +    + PDAVT+T L I + +I    R 
Sbjct: 538 KPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRA 597

Query: 413 V 413
           V
Sbjct: 598 V 598



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 150/319 (47%), Gaps = 33/319 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   SFNIL    A+T+  D  ++ F+ +      PD +T+ IL++C CK G     F V
Sbjct: 152 PNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEV 211

Query: 148 LGRILRSCFT-PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              ++   F  PD    T++++ L    R+ EA  +F ++   G   D   YNT+I+GL 
Sbjct: 212 FHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLA 271

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + GH   AL + + M          C P  +TY  +++ LCK AG+              
Sbjct: 272 KAGHAQEALKVLDNM------LAKACVPTEVTYGILVNSLCK-AGT-------------- 310

Query: 267 LNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           L +    F ++       N   +  LI G  K  ++K A  LF  +  AG  P+V+T+ +
Sbjct: 311 LERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTV 370

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF- 382
           +I GLC  G      ++E     F+ +   G  P++ TY  +I    KIGRV++ F I  
Sbjct: 371 MIDGLCKSG------NFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMK 424

Query: 383 GRILPSCFTPDAVTFTSLI 401
           G I   CF PD+VT+  L+
Sbjct: 425 GMIAHGCF-PDSVTYICLL 442



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 155/365 (42%), Gaps = 49/365 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  +FD M+     RP V +  ++   L K+ +++     F+ +   G  P+  TY  
Sbjct: 347 KEACSLFDEMVEA-GYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTT 405

Query: 131 LINCFCKMGRVSHGFVVL-GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +I    K+GRV++ F ++ G I   CF PD+VT+  L+   C   R+ EAA L  +L   
Sbjct: 406 IIQGLSKIGRVANAFRIMKGMIAHGCF-PDSVTYICLLDGFCKLGRLDEAAQLLDELDKC 464

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE---------------------- 227
               ++  Y++L+NGLC  G     L+   E +    E                      
Sbjct: 465 SSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDE 524

Query: 228 --------FGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
                       C+PDA TY+ +I+GLC+   +     F+ +     L K+ +    V  
Sbjct: 525 ACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHD---LEKVGYLPDAVTY 581

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
             LC+       GLCKI ++  A ++ +     G   +VV Y  L  GLC  GQ+D    
Sbjct: 582 TPLCI-------GLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRA-- 632

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
                 LF+ +   G  PD   Y  +IN   K+ ++      F  ++     P   T+T+
Sbjct: 633 ----VSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTA 688

Query: 400 LIKIL 404
           L++ L
Sbjct: 689 LVQAL 693



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 128/310 (41%), Gaps = 63/310 (20%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM--GRVSHGFVVLGRI 151
           +I+ G L KT   D    +F+R+   G  PD  TYNILIN  C+    RV   F +L  +
Sbjct: 511 SIIVG-LCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDL 569

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            +  + PDAVT+T L   LC    +  A  +  +    G   DV  Y  L  GLC  G  
Sbjct: 570 EKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQV 629

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A++LF+EM    G       PDA  Y                                
Sbjct: 630 DRAVSLFQEMVRQGGA------PDAAAYC------------------------------- 652

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
                           C+I+GL K+ KL+ A + F  +   G  P V TY  L++ LC+ 
Sbjct: 653 ----------------CIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHA 696

Query: 332 GQMDETKHYETVFLLFKRLNSTG-LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
           G +DE  H       F+ + + G L   +  Y+ LI+ FCK  +V +   +F  ++    
Sbjct: 697 GNVDEAFHR------FESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGN 750

Query: 391 TPDAVTFTSL 400
            P AVT  SL
Sbjct: 751 VPTAVTSASL 760



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 128/299 (42%), Gaps = 26/299 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFG--CLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +EA  +F  M++    +P  T++NIL    C ++    +   +L   L   G  PD  TY
Sbjct: 523 DEACRIFQRMVS-EGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTY 581

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
             L    CK+G V     +L       +  D V +T+L   LC + ++  A +LF ++  
Sbjct: 582 TPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVR 641

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   D   Y  +INGL +      A   F+EM  G G+     +P   TY+ ++  LC 
Sbjct: 642 QGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMI-GKGQ-----KPTVATYTALVQALC- 694

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
            AG+ +        +F     M     LV      + +  LI G CK  K+  A +LF+ 
Sbjct: 695 HAGNVD-------EAFHRFESMLARGELVGS---VMIYDALIHGFCKALKVDAALKLFED 744

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           +   G +P  VT   L  GL   G+ ++ +       L + + + G  P   T+  +++
Sbjct: 745 MISRGNVPTAVTSASLFDGLVRSGKTEKAQE------LLQEMAAGGSPPHAATFTAILD 797



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 65/181 (35%), Gaps = 43/181 (23%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYTYNILINCF 135
           FD M+  +  +P V ++  L   L    + D     F+ +   G L      Y+ LI+ F
Sbjct: 671 FDEMIG-KGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGF 729

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK  +V     +   ++     P AVT  S                              
Sbjct: 730 CKALKVDAALKLFEDMISRGNVPTAVTSAS------------------------------ 759

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
                L +GL R+G T  A  L +EMA G         P A T++ I+DGL K   S   
Sbjct: 760 -----LFDGLVRSGKTEKAQELLQEMAAGGS------PPHAATFTAILDGLRKSDESGKL 808

Query: 256 L 256
           L
Sbjct: 809 L 809


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 162/336 (48%), Gaps = 31/336 (9%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V ++  L   L K        ++   +   G  PD   YN+LIN  CK  +V  
Sbjct: 290 RGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDE 349

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +L R +     PD VT++S+I  LC  +R+ EA  L   ++  GC  DV  Y+TLI+
Sbjct: 350 SIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLID 409

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN--FLGFSCM 261
           GLC+ G    A +L+E MA G+G     C+ D +TYST+IDGLCK AG  +   L  + M
Sbjct: 410 GLCKAGKVDEAFDLYEVMA-GDG-----CDADVVTYSTLIDGLCK-AGRVDEAHLLLARM 462

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
                      Y  L++             GLC ++ L  A EL + + R+   P+ VTY
Sbjct: 463 VRMGTPPSTMTYNSLIK-------------GLCDLNHLDEAIELVEEMERSNCAPSAVTY 509

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKR----LNSTGLFPDLYTYNILINCFCKIGRVSS 377
           NILI G+C   ++D       V LL +     + + G   D   Y+ LI+  CK GRV+ 
Sbjct: 510 NILIHGMCRMERVD-----SAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAE 564

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
               F  ++ +   PD +T++ L++ L+ +    ++
Sbjct: 565 ALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHEL 600



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 157/340 (46%), Gaps = 30/340 (8%)

Query: 71  NEALCVFDYMLNMRPS------RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
             A+ +F  ML+ R         P V ++++L   L K       + L + +   G  PD
Sbjct: 166 ERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPD 225

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
             TY IL++  CK  +V+  + VL  +L +   P+ VT+ SL+  LC   R+ +A AL  
Sbjct: 226 VITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMR 285

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
            +   GC  +V TY TLI+GLC+ G    A  +  +M +  G       PD + Y+ +I+
Sbjct: 286 DMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG------TPDLMIYNMLIN 339

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           GLCK       +     A    +      +  V            I GLC+ ++L  A  
Sbjct: 340 GLCKADQVDESIALLRRAVSGGIKPDVVTYSSV------------IYGLCRSNRLDEACR 387

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L   +   G  P+V+ Y+ LI GLC  G++DE       F L++ +   G   D+ TY+ 
Sbjct: 388 LLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEA------FDLYEVMAGDGCDADVVTYST 441

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           LI+  CK GRV    ++  R++     P  +T+ SLIK L
Sbjct: 442 LIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL 481



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 147/315 (46%), Gaps = 19/315 (6%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V   +IL   L K K     L  F+ +  +G+  D   Y  L++   K  R+     +
Sbjct: 42  PNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAI 101

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P+ VT+ SLI  LC  +    A  LF  ++   C   + TYNTL++GL R
Sbjct: 102 LHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFR 161

Query: 208 TGHTIVALNLFEEMANGNG-EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           TG    A+ LF+EM +    +    C P+ ITYS +IDGLCK    AN +  S       
Sbjct: 162 TGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCK----ANRV--SQAVELLE 215

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             K     P V      + +  L+DGLCK SK+  A E+ + +  AG +PN+VTYN L+ 
Sbjct: 216 SMKARGCSPDV------ITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLH 269

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC        +       L + +   G  P++ TY  LI+  CK+GRV     +   ++
Sbjct: 270 GLC------RARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMI 323

Query: 387 PSCFTPDAVTFTSLI 401
               TPD + +  LI
Sbjct: 324 DKGGTPDLMIYNMLI 338



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 149/318 (46%), Gaps = 17/318 (5%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++  L     +    D     F  +    L P+ +  +ILI+  CK  R      
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
               +  S    D V +T+L+  L  E R+ +A A+  ++R  GCE +V TYN+LI+GLC
Sbjct: 66  CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLC 125

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      A  LFE M +      V C P  +TY+T++DGL +            MA F  
Sbjct: 126 KNNEPDRAQELFEHMKS------VECSPSMVTYNTLLDGLFRTGKLER-----AMALFQE 174

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +     +    R     + +  LIDGLCK +++  A EL +S+   G  P+V+TY IL+ 
Sbjct: 175 MLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVD 234

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC + ++         + + + +   G  P+L TYN L++  C+  RVS    +   + 
Sbjct: 235 GLCKESKV------AAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMT 288

Query: 387 PSCFTPDAVTFTSLIKIL 404
               TP+ VT+ +LI  L
Sbjct: 289 CRGCTPNVVTYGTLIDGL 306



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 123/260 (47%), Gaps = 27/260 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V +++ +   L ++   D    L   +   G  PD   Y+ LI+  CK G+V   F 
Sbjct: 363 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 422

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +       D VT+++LI  LC   R+ EA  L  ++   G      TYN+LI GLC
Sbjct: 423 LYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLC 482

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFL----GFSC 260
              H   A+ L EEM   N      C P A+TY+ +I G+C+     SA  L       C
Sbjct: 483 DLNHLDEAIELVEEMERSN------CAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARC 536

Query: 261 MASF-SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
           +A+  +AL+ +A+                LIDGLCK  ++  A + FQ +   G++P+ +
Sbjct: 537 VAAGGTALDTIAYSS--------------LIDGLCKAGRVAEALDYFQEMIDNGVIPDHI 582

Query: 320 TYNILIRGLCNDGQMDETKH 339
           TY+IL+ GL     + E +H
Sbjct: 583 TYSILLEGLKKSKDLHELRH 602



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 96/223 (43%), Gaps = 35/223 (15%)

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+ DV+TY  L+ G CR G    A   F+EM + N        P+    S +IDGLCK  
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKN------LVPNVFLCSILIDGLCKAK 58

Query: 251 GSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
            S + L  F  M     +     Y               L+ GL K  +L  A  +   +
Sbjct: 59  RSIDALRCFRAMQGSGIVADTVIYTA-------------LLSGLWKEKRLDQALAILHEM 105

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G  PNVVTYN LI GLC + + D  +       LF+ + S    P + TYN L++  
Sbjct: 106 RDHGCEPNVVTYNSLIDGLCKNNEPDRAQE------LFEHMKSVECSPSMVTYNTLLDGL 159

Query: 370 CKIGRVSSGFVIFGRIL--------PSCFTPDAVTFTSLIKIL 404
            + G++     +F  +L          C +P+ +T++ LI  L
Sbjct: 160 FRTGKLERAMALFQEMLDRRSHDMDDRC-SPNVITYSVLIDGL 201



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 24/177 (13%)

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN-FLC- 288
           +C+PD  TY+ ++ G C+                  +++    F  +R + L  N FLC 
Sbjct: 4   ICQPDVYTYAALLRGFCRGG---------------EIDQAQRCFDEMRSKNLVPNVFLCS 48

Query: 289 -LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LIDGLCK  +   A   F+++  +G++ + V Y  L+ GL  + ++D+         + 
Sbjct: 49  ILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQA------LAIL 102

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             +   G  P++ TYN LI+  CK         +F  +     +P  VT+ +L+  L
Sbjct: 103 HEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGL 159


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/295 (32%), Positives = 143/295 (48%), Gaps = 24/295 (8%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D VL L   L   GL PD Y YN +I   CK G V     +L  + +    PD V +T++
Sbjct: 294 DKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTV 353

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           I   C    +  A  LF ++R      D+ TY ++I+G+C++G  + A  +F EM     
Sbjct: 354 ISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKG- 412

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
                 EPD +TY+ +IDG CK AG           +FS  N+M        V    + +
Sbjct: 413 -----LEPDEVTYTALIDGYCK-AGEMK-------EAFSVHNQMVQKGLTPNV----VTY 455

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             L DGLCK  ++ +A EL   + R GL PNV TYN ++ GLC  G +++T        L
Sbjct: 456 TALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVK------L 509

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + ++  G +PD  TY  L++ +CK+G ++    +   +L     P  VTF  L+
Sbjct: 510 MEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLM 564



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 154/317 (48%), Gaps = 28/317 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++  +   + K+        +F  + + GL PD  TY  LI+ +CK G +   F V
Sbjct: 380 PDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSV 439

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++++   TP+ VT+T+L   LC    I  A  L  ++   G + +V+TYNT++NGLC+
Sbjct: 440 HNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCK 499

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
            G+    + L EEM +  G +     PD ITY+T++D  CK  E   A+ L    M    
Sbjct: 500 IGNIEQTVKLMEEM-DLAGFY-----PDTITYTTLMDAYCKMGEMAKAHEL-LRIM---- 548

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            LNK        R+Q   + F  L++G C    L+    L + +   G+MPN  T+N L+
Sbjct: 549 -LNK--------RLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLM 599

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           +  C    M  T        ++K ++  G+ PD  TYNILI   CK   +   + +   +
Sbjct: 600 KQYCIKNNMRATTE------IYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEM 653

Query: 386 LPSCFTPDAVTFTSLIK 402
           +   ++  A T+ +LI+
Sbjct: 654 VEKGYSVTAATYDALIR 670



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 145/316 (45%), Gaps = 24/316 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P    +N +   L K         L + +   G+FPD   Y  +I+ FCK+G VS    
Sbjct: 309 KPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACK 368

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   + R    PD VT+TS+I  +C   +++EA  +F ++ V G E D  TY  LI+G C
Sbjct: 369 LFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYC 428

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A ++  +M            P+ +TY+ + DGLCK                  
Sbjct: 429 KAGEMKEAFSVHNQMVQKG------LTPNVVTYTALADGLCKN------------GEIDV 470

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            N++        +Q     +  +++GLCKI  ++   +L + +  AG  P+ +TY  L+ 
Sbjct: 471 ANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMD 530

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             C  G+M +  H     +L KRL      P L T+N+L+N FC  G +  G  +   +L
Sbjct: 531 AYCKMGEMAKA-HELLRIMLNKRLQ-----PTLVTFNVLMNGFCMSGMLEDGERLIEWML 584

Query: 387 PSCFTPDAVTFTSLIK 402
                P+A TF SL+K
Sbjct: 585 EKGIMPNATTFNSLMK 600



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 151/309 (48%), Gaps = 26/309 (8%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           NI+  CL +        +L  ++   G FPD  +Y ++++ +C++G +     ++  +  
Sbjct: 246 NIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKG 305

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
               PD   + ++I  LC    ++EA  L   +R +G   D   Y T+I+G C+ G+   
Sbjct: 306 KGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSA 365

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
           A  LF+EM            PD +TY+++I G+CK            + +    N+M   
Sbjct: 366 ACKLFDEMRRKK------IVPDIVTYTSVIHGICKSG--------KMVEAREMFNEM--- 408

Query: 274 FPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
             LV+ ++   + +  LIDG CK  ++K A  +   + + GL PNVVTY  L  GLC +G
Sbjct: 409 --LVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNG 466

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           ++D          L   ++  GL P++YTYN ++N  CKIG +     +   +  + F P
Sbjct: 467 EIDVANE------LLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYP 520

Query: 393 DAVTFTSLI 401
           D +T+T+L+
Sbjct: 521 DTITYTTLM 529



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 124/290 (42%), Gaps = 45/290 (15%)

Query: 57  CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
           CK+ GE D+     NE L    + ++ +  +P V ++N +   L K  + +  + L + +
Sbjct: 463 CKN-GEIDVA----NELL----HEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEM 513

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
           +L G +PD  TY  L++ +CKMG ++    +L  +L     P  VTF  L+   C    +
Sbjct: 514 DLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGML 573

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
            +   L   +   G   +  T+N+L+   C   +      +++ M +     GV+  PD+
Sbjct: 574 EDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDR----GVM--PDS 627

Query: 237 ITYSTIIDGLCK--EAGSANFL-------GFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
            TY+ +I G CK      A FL       G+S  A+                      + 
Sbjct: 628 NTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAA---------------------TYD 666

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            LI G  K  K   AR+LF+ + + GL+     Y+I +     +G  + T
Sbjct: 667 ALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWEIT 716



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 1/145 (0%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T+FN L        +      ++K ++  G+ PD  TYNILI   CK   +   + +
Sbjct: 590 PNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFL 649

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++   ++  A T+ +LI+      + +EA  LF ++R  G   +   Y+  ++    
Sbjct: 650 HKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYE 709

Query: 208 TGHTIVALNLFEE-MANGNGEFGVV 231
            G+  + L L +E M   +G   VV
Sbjct: 710 EGNWEITLELCDEFMTELSGTIFVV 734



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 6/111 (5%)

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           C    +KIA ++F+  P  G+  N V+ NI++  LC  G++ E  +      L  ++   
Sbjct: 218 CNFEGIKIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHN------LLVQMTDR 271

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G FPD+ +Y ++++ +C+IG +     +   +      PD   + ++I +L
Sbjct: 272 GNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLL 322


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 167/364 (45%), Gaps = 58/364 (15%)

Query: 71  NEALCVFDYM--LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
            EAL +F+ M  L   P+R    S N +   L +    D    +F  +    + PD ++Y
Sbjct: 132 EEALLLFNEMERLGCTPNR---RSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSY 188

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            ILI+   K G+++  + +  R+L S  TP AVT+  +I  +C    + EA  LF  +R 
Sbjct: 189 GILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRS 248

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            GC    FT+N LI+  C+ G    A  L + M + +G       PD +TYST+I GLC 
Sbjct: 249 KGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTD-DGHV-----PDVVTYSTLISGLC- 301

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFP-LVRVQC--LCLNFLCLIDGLCKISKLKIAREL 305
                         S + ++        +V+ QC    +    LI GLCK  ++K ARE+
Sbjct: 302 --------------SIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 347

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL-------------------- 345
             ++  +G  P+VVTYN L+ G C  GQ +  +   +  +                    
Sbjct: 348 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCK 407

Query: 346 ---------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                    +F ++ S+G  P+L+TY  LI  FC  G+V  G  +FG ++ +  +PD V 
Sbjct: 408 ANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVV 467

Query: 397 FTSL 400
           + +L
Sbjct: 468 YGTL 471



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 155/327 (47%), Gaps = 30/327 (9%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +N R   P   S+ IL   LAK    +   +LF++L  +G+ P    Y  LI+  C    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +   + R    P  VT+  +I   C    + EA  L  K+   G   DV TYNT
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           +++GLC++     AL LF EM        + C P+  +++TII GLC++           
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMER------LGCTPNRRSHNTIILGLCQQ----------- 163

Query: 261 MASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
               S +++    F  +  + +     ++  LIDGL K  KL  A +LFQ +  +G+ P+
Sbjct: 164 ----SKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPS 219

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
            VTYN++I G+C    +DE         LFK + S G  P  +T+NILI+  CK G++  
Sbjct: 220 AVTYNVVIHGMCLAYTLDEA------LELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDE 273

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKIL 404
            F +  R+      PD VT+++LI  L
Sbjct: 274 AFRLLKRMTDDGHVPDVVTYSTLISGL 300



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 159/355 (44%), Gaps = 38/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  +F  +L+   + P   ++  L   L     +D    LF  +N  G  P   TYN+
Sbjct: 27  NDARNLFQKLLHSGVT-PSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNV 85

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK G +     ++ +++     PD VT+ +++  LC  SR+ EA  LF ++   G
Sbjct: 86  MIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLG 145

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +  ++NT+I GLC+      A  +F EM   +        PD+ +Y  +IDGL K A
Sbjct: 146 CTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD------IPPDSWSYGILIDGLAK-A 198

Query: 251 GSAN--FLGFSCMASFSALNKMAFYFPLVRVQCLC----------------------LNF 286
           G  N  +  F  M           Y  ++   CL                         F
Sbjct: 199 GKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTF 258

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LID  CK  KL  A  L + +   G +P+VVTY+ LI GLC+  ++D+ +H      L
Sbjct: 259 NILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARH------L 312

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + +      P + T N LI+  CK GR+     +   ++ S  +PD VT+ +L+
Sbjct: 313 LEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 112/258 (43%), Gaps = 22/258 (8%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  +P V + N L   L K         +   +  +G  PD  TYN L++  C+ G+   
Sbjct: 319 RQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTER 378

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +L  ++     P+ VT+T+L+  LC  +R+ EA  +F +++  GC  ++FTY  LI 
Sbjct: 379 ARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALIL 438

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVC---EPDAITYSTIIDGLCKEAGSANFLGFSC 260
           G C  G     L LF EM         VC    PD + Y T+   LCK   SA  L    
Sbjct: 439 GFCSAGQVDGGLKLFGEM---------VCAGISPDHVVYGTLAAELCKSGRSARALEI-L 488

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                +L   A+   + R           +DGL +  K+++A    + + R G +P    
Sbjct: 489 REGRESLRSEAWGDEVYRFA---------VDGLLEAGKMEMALGFVRDMVRGGQLPAPER 539

Query: 321 YNILIRGLCNDGQMDETK 338
              L+ GLC  GQ  E +
Sbjct: 540 CASLVAGLCKSGQGGEAR 557



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 108/279 (38%), Gaps = 40/279 (14%)

Query: 46  RASLEQFLKERCKSSGEGDITSITPN-------------EALCVFDYMLNMRPSRPPVTS 92
           R  LE  +K +CK       T +T N             EA  V D M++   S P V +
Sbjct: 310 RHLLEDMVKRQCKP------TVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS-PDVVT 362

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N L     +    +    L   +   GL P+  TY  L++  CK  R+     V  ++ 
Sbjct: 363 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK 422

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   P+  T+T+LI   C+  ++     LF ++   G   D   Y TL   LC++G + 
Sbjct: 423 SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSA 482

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            AL +  E   G          D + Y   +DGL  EAG                  + F
Sbjct: 483 RALEILRE---GRESLRSEAWGDEV-YRFAVDGLL-EAGKMEM-------------ALGF 524

Query: 273 YFPLVRVQCLCLNFLC--LIDGLCKISKLKIARELFQSL 309
              +VR   L     C  L+ GLCK  +   AR + + +
Sbjct: 525 VRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 164/356 (46%), Gaps = 42/356 (11%)

Query: 72  EALCVFDYMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +A  +FD M    PS+   P + SF+ L G L+K    D  L  F+ +   GL PD   Y
Sbjct: 481 DAERIFDEM----PSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIY 536

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            ILI  FC+ G +S    V   +L      D VT+ +++  LC E  + EA  LFT++  
Sbjct: 537 TILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTE 596

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   D +T+ TLING  + G+   A+ LFE M   N       +PD +TY+T+IDG CK
Sbjct: 597 RGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRN------LKPDVVTYNTLIDGFCK 650

Query: 249 --EAGSANFL---------------------GFSCMASFSALNKMAFYFPLVRVQCLCLN 285
             E    N L                     G+  M   S   ++         +   + 
Sbjct: 651 GSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIIT 710

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
              ++ G C+      A E   ++   G++P+ +TYN LI G   +  MD        F 
Sbjct: 711 CNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDR------AFA 764

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L  ++ ++GL PD+ TYN+++N F + GR+    +I  +++     PD  T+TSLI
Sbjct: 765 LVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLI 820



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 148/335 (44%), Gaps = 35/335 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + + N L G L K    D    +++ +  +G+  + YT NI+IN  CK  ++ +    L 
Sbjct: 323 INACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLS 382

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      PD VT+ +LI   C +  + EA  L   +   G +  VFTYN +INGLC+TG
Sbjct: 383 DMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTG 442

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYST----------------IIDGLCKEAGSA 253
             + A  + +EM        +   PD  TY+                 I D +  +    
Sbjct: 443 KYLRAKGVLDEM------LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVP 496

Query: 254 NFLGFSCMASF----SALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELF 306
           + + FS +         L++   YF  ++   L  +   +  LI G C+   +  A ++ 
Sbjct: 497 DLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVR 556

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G   +VVTYN ++ GLC +  + E         LF  +   G+FPD YT+  LI
Sbjct: 557 DEMLEQGCXLDVVTYNTILNGLCKEKMLSEADE------LFTEMTERGVFPDFYTFTTLI 610

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N + K G ++    +F  ++     PD VT+ +LI
Sbjct: 611 NGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLI 645



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 153/346 (44%), Gaps = 51/346 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L     +    +    L   ++  GL P  +TYN +IN  CK G+      V
Sbjct: 391 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 450

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L+   +PD  T+  L+ + C    +M+A  +F ++   G   D+ +++ LI  L +
Sbjct: 451 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 510

Query: 208 TGHTIVALNLFEEMANGN------------GEF---GVVCEP--------------DAIT 238
            G    AL  F +M N              G F   GV+ E               D +T
Sbjct: 511 NGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVT 570

Query: 239 YSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           Y+TI++GLCKE     A+ L F+ M          FY            F  LI+G  K 
Sbjct: 571 YNTILNGLCKEKMLSEADEL-FTEMTERGVFPD--FY-----------TFTTLINGYXKD 616

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
             +  A  LF+ + +  L P+VVTYN LI G C   +M      E V  L+  + S  ++
Sbjct: 617 GNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEM------EKVNELWNDMISRRIY 670

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           P+  +Y ILIN +C +G VS  F ++  ++   F    +T  +++K
Sbjct: 671 PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVK 716



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 108/255 (42%), Gaps = 24/255 (9%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           + + F  L++      ++ E    F  L+  G  + +   N+L+ GL + G   +A  ++
Sbjct: 287 NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 346

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
           +E+     +  V       T + +I+ LCK     N        SF +  +    FP V 
Sbjct: 347 QEVVRSGVQVNVY------TLNIMINALCKNQKIEN------TKSFLSDMEEKGVFPDV- 393

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                + +  LI+  C+   L+ A EL  S+   GL P V TYN +I GLC  G+    K
Sbjct: 394 -----VTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAK 448

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  +   +   G+ PD  TYNIL+   C+   +     IF  +      PD V+F+
Sbjct: 449 G------VLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFS 502

Query: 399 SLIKILEINSFFRQV 413
           +LI +L  N    Q 
Sbjct: 503 ALIGLLSKNGCLDQA 517



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 42/210 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A+ +F+ M+  R  +P V ++N L     K    + V  L+  +    ++P+  +Y I
Sbjct: 620 NKAVTLFEMMIQ-RNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGI 678

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCF---------------------------------- 156
           LIN +C MG VS  F +   ++   F                                  
Sbjct: 679 LINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG 738

Query: 157 -TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             PD +T+ +LI     E  +  A AL  K+   G   DV TYN ++NG  R G    A 
Sbjct: 739 IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAE 798

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
            +  +M     E GV   PD  TY+++I+G
Sbjct: 799 LIMLKMI----ERGV--NPDRSTYTSLING 822



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%)

Query: 118 LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177
           L G+ PD  TYN LIN F K   +   F ++ ++  S   PD +T+  ++     + R+ 
Sbjct: 736 LKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQ 795

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           EA  +  K+   G   D  TY +LING     +   A  + +EM
Sbjct: 796 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEM 839



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L     K ++ D   +L  ++  +GL PD  TYN+++N F + GR+    ++
Sbjct: 741 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 800

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           + +++     PD  T+TSLI     ++ + EA
Sbjct: 801 MLKMIERGVNPDRSTYTSLINGHVTQNNLKEA 832


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 165/354 (46%), Gaps = 39/354 (11%)

Query: 72  EALCVFDYMLN--MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           EA   FD ML+  + P+ P  T   +L     K  +    LS+F+RL+  G+ PD  T +
Sbjct: 561 EAAKYFDEMLDHGLMPNNPLYT---VLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCS 617

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
             I+   K GRV     V   +      PD  T++SLI   C +  + +A  L  ++ + 
Sbjct: 618 AFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK 677

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   ++F YN L++GLC++G    A  LF+ M     E G+  EPD++TYST+IDG CK 
Sbjct: 678 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMP----EKGL--EPDSVTYSTMIDGYCKS 731

Query: 250 AGSAN-FLGFSCMASFSALNKMAFYFPLVRVQC---------------------LCLNFL 287
              A  F  F  M S         Y  LV   C                       L+F 
Sbjct: 732 ENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN 791

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LIDG CK  K++ A +LFQ +    +MP+ VTY  +I   C  G+M+E        LLF
Sbjct: 792 TLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEAN------LLF 845

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K +    L  D  TY  L+  + K+G+ S  F +F +++     PD VT+  +I
Sbjct: 846 KEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 899



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 158/369 (42%), Gaps = 67/369 (18%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  ++IL    A     +    L   ++ +G+ PD + YN +I+C  K G++     
Sbjct: 470 KPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAST 529

Query: 147 VLGRILRSCFTPDAVTF-----------------------------------TSLIKDLC 171
            L  I      PDAVTF                                   T LI    
Sbjct: 530 YLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHF 589

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
               +MEA ++F +L   G   DV T +  I+GL + G    AL +F E+     E G+V
Sbjct: 590 KAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK----EKGLV 645

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
             PD  TYS++I G CK+             +F   ++M     L  +      +  L+D
Sbjct: 646 --PDVFTYSSLISGFCKQG--------EVEKAFELHDEMC----LKGIAPNIFIYNALVD 691

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GLCK   ++ AR+LF  +P  GL P+ VTY+ +I G C      ++++    F LF  + 
Sbjct: 692 GLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYC------KSENVAEAFSLFHEMP 745

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KIL 404
           S G+ P  + YN L++  CK G +     +F  +L   F    ++F +LI       KI 
Sbjct: 746 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQ 804

Query: 405 EINSFFRQV 413
           E +  F+++
Sbjct: 805 EASQLFQEM 813



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 149/328 (45%), Gaps = 31/328 (9%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           ++++   + +    D  + L + +   GL P+ YTY I+    C+  R++   +    + 
Sbjct: 266 YSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQ 325

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           ++   PD    ++LI     E  I E   +   +   G  +++ TYN LI+GLC+ G   
Sbjct: 326 KTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKME 385

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A  + + M        + C+P++ T+  +I+G C+E      L          + K   
Sbjct: 386 KAAEILKGMVT------LGCKPNSRTFCLLIEGYCREHNMGRALEL-----LDEMEKRNL 434

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
               V       ++  +I+GLC    L +A +L + +  +GL PNVV Y+ILI    ++G
Sbjct: 435 VPSAV-------SYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEG 487

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           +++E +       L   ++ +G+ PD++ YN +I+C  K G++         I      P
Sbjct: 488 RIEEARR------LLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKP 541

Query: 393 DAVTFTSLI-------KILEINSFFRQV 413
           DAVTF + I       K+ E   +F ++
Sbjct: 542 DAVTFGAFILGYSKTGKMTEAAKYFDEM 569



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 149/329 (45%), Gaps = 25/329 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL + D M   R   P   S+  +   L   K       L +++  +GL P+   Y+ILI
Sbjct: 422 ALELLDEM-EKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILI 480

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
             +   GR+     +L  +  S   PD   + ++I  L    ++ EA+    +++  G +
Sbjct: 481 MAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLK 540

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D  T+   I G  +TG    A   F+EM     + G++  P+   Y+ +I+G       
Sbjct: 541 PDAVTFGAFILGYSKTGKMTEAAKYFDEML----DHGLM--PNNPLYTVLING------- 587

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
            +F   + M + S   ++     L  VQ  C  F   I GL K  +++ A ++F  L   
Sbjct: 588 -HFKAGNLMEALSIFRRLHALGVLPDVQT-CSAF---IHGLLKNGRVQEALKVFSELKEK 642

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           GL+P+V TY+ LI G C  G++      E  F L   +   G+ P+++ YN L++  CK 
Sbjct: 643 GLVPDVFTYSSLISGFCKQGEV------EKAFELHDEMCLKGIAPNIFIYNALVDGLCKS 696

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G +     +F  +      PD+VT++++I
Sbjct: 697 GDIQRARKLFDGMPEKGLEPDSVTYSTMI 725



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 146/382 (38%), Gaps = 58/382 (15%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
             EAL VF   L  +   P V +++ L     K    +    L   + L G+ P+ + YN 
Sbjct: 630  QEALKVFSE-LKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNA 688

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            L++  CK G +     +   +      PD+VT++++I   C    + EA +LF ++   G
Sbjct: 689  LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 748

Query: 191  CELDVFTYNTLINGLCRTGHTIVALNLFEEMANG--------NGEFGVVCE--------- 233
             +   F YN L++G C+ G    A+NLF EM           N      C+         
Sbjct: 749  VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQ 808

Query: 234  -----------PDAITYSTIIDGLCKEAG--SANFL---------------GFSCMASFS 265
                       PD +TY+T+ID  CK      AN L                 S M  ++
Sbjct: 809  LFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYN 868

Query: 266  ALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
             L + +  F L        V+   + +  +I   CK   L  A +L   +   G++    
Sbjct: 869  KLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT 928

Query: 320  TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
             +++LI  LC    + E         L   +   GL P L   N L+  F + G++    
Sbjct: 929  IHDLLITALCKREDLTEASK------LLDEMGELGLKPSLAACNTLVRSFHEAGKMDEAT 982

Query: 380  VIFGRILPSCFTPDAVTFTSLI 401
             +F  +      PD  T   L+
Sbjct: 983  RVFEGVKSLGLVPDTTTLIDLV 1004



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 146/354 (41%), Gaps = 36/354 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA   F+ M      +P   + + L     +    D VL +   +   G+  +  TYN+
Sbjct: 315 NEAKLTFEEM-QKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNV 373

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G++     +L  ++     P++ TF  LI+  C E  +  A  L  ++    
Sbjct: 374 LIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRN 433

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII------- 243
                 +Y  +INGLC      +A  L E+M           +P+ + YS +I       
Sbjct: 434 LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG------LKPNVVVYSILIMAYASEG 487

Query: 244 ---------DGLCKEAGSANFLGF----SCMASFSALNKMAFYFPLVRVQCL---CLNFL 287
                    DG+     + +   +    SC++    + + + Y   ++ + L    + F 
Sbjct: 488 RIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFG 547

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
             I G  K  K+  A + F  +   GLMPN   Y +LI G    G + E         +F
Sbjct: 548 AFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEA------LSIF 601

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +RL++ G+ PD+ T +  I+   K GRV     +F  +      PD  T++SLI
Sbjct: 602 RRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 655



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 131/297 (44%), Gaps = 28/297 (9%)

Query: 72   EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
            EA  +F  M + +  +P    +N L     K    +  ++LF+ +   G F    ++N L
Sbjct: 736  EAFSLFHEMPS-KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTL 793

Query: 132  INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
            I+ +CK  ++     +   ++     PD VT+T++I   C   ++ EA  LF +++    
Sbjct: 794  IDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 853

Query: 192  ELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             +D  TY +L+ G  + G +     LFE+M A G        +PD +TY  +I   CKE 
Sbjct: 854  IVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKG-------VKPDEVTYGLVIYAHCKED 906

Query: 251  GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                    + + +F   +++     L +     L    LI  LCK   L  A +L   + 
Sbjct: 907  --------NLVEAFKLRDEVVGKGMLTKGTIHDL----LITALCKREDLTEASKLLDEMG 954

Query: 311  RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
              GL P++   N L+R     G+MDE         +F+ + S GL PD  T   L+N
Sbjct: 955  ELGLKPSLAACNTLVRSFHEAGKMDEATR------VFEGVKSLGLVPDTTTLIDLVN 1005



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 138/340 (40%), Gaps = 36/340 (10%)

Query: 69  TPNEALCVFDYML----NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           TP  +  + D +L    N   S P V  F+IL     +    D   ++F       +   
Sbjct: 135 TPYSSSSILDSVLFWFRNYGGSSPVV--FDILIDSYKRMGMLDEAANVFFVAKNDSILIS 192

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
               N L+    K G +   + V   +L +    D  T+T L+  LC    +  A  +  
Sbjct: 193 LIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLI 252

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           ++   G   + F Y+ +I G+C+ G    A+ L   M    GE G+V  P+  TY+ I  
Sbjct: 253 EMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSM----GEKGLV--PNTYTYTIITA 306

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF---LCLIDGLCKISKLKI 301
           GLC+                  +N+    F  ++   L  ++     LIDG  +   +  
Sbjct: 307 GLCRA---------------KRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDE 351

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
              +   +   G+  N++TYN+LI GLC  G+M++         + K + + G  P+  T
Sbjct: 352 VLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAE------ILKGMVTLGCKPNSRT 405

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + +LI  +C+   +     +   +      P AV++ ++I
Sbjct: 406 FCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMI 445



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 73/184 (39%), Gaps = 7/184 (3%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
             EA  +F  M         VT  ++++G   K      V +LF+++   G+ PD  TY +
Sbjct: 839  EEANLLFKEMQERNLIVDTVTYTSLMYG-YNKLGQSSEVFALFEKMVAKGVKPDEVTYGL 897

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            +I   CK   +   F +   ++             LI  LC    + EA+ L  ++   G
Sbjct: 898  VIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELG 957

Query: 191  CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             +  +   NTL+      G    A  +FE    G    G+V  PD  T   +++G   + 
Sbjct: 958  LKPSLAACNTLVRSFHEAGKMDEATRVFE----GVKSLGLV--PDTTTLIDLVNGNLNDT 1011

Query: 251  GSAN 254
             S +
Sbjct: 1012 DSED 1015


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 165/341 (48%), Gaps = 35/341 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  FDYM+  RP    V   N + G   +    D  +SL++++ +  +  + Y++NI
Sbjct: 88  DDAIDFFDYMVRSRPFYTAVDC-NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI CFC   ++S      G++ +  F PD VTF +L+  LC E RI EA ALF  +   G
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206

Query: 191 CELD----------VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
              D          V T+NTLINGLC  G  + A  L  +M  G G        D +TY 
Sbjct: 207 SLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMV-GKG-----LHIDVVTYG 260

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           TI++G+CK   + + L          L+KM        ++   + +  +ID LCK     
Sbjct: 261 TIVNGMCKMGDTKSALNL--------LSKM----EETHIKPDVVIYSAIIDRLCKDGHHS 308

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A+ LF  +   G+ PNV TYN +I G C+ G+  + +       L + +    + PD+ 
Sbjct: 309 DAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR------LLRDMIEREINPDVL 362

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           T+N LI+   K G++     +   +L  C  PD VT+ S+I
Sbjct: 363 TFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMI 403



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 151/354 (42%), Gaps = 69/354 (19%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  ++ +   L K  H+     LF  +   G+ P+ +TYN +I+ FC  GR S    
Sbjct: 288 KPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR 347

Query: 147 VL-----------------------------------GRILRSCFTPDAVTFTSLIKDLC 171
           +L                                     +L  C  PD VT+ S+I   C
Sbjct: 348 LLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFC 407

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
             +R  +A  +F  +       DV T+NT+I+  CR       + L  E++      G+V
Sbjct: 408 KHNRFDDAKHMFDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRR----GLV 459

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC--- 288
              +  TY+T+I G C+                  LN     F  +    +C + +    
Sbjct: 460 --ANTTTYNTLIHGFCE---------------VDNLNAAQDLFQEMISHGVCPDTITCNI 502

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+ G C+  KL+ A ELF+ +  + +  + V YNI+I G+C   ++DE       + LF 
Sbjct: 503 LLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEA------WDLFC 556

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            L   G+ PD+ TYN++I+ FC    +S   V+F ++  +   PD  T+ +LI+
Sbjct: 557 SLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIR 610



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 123/309 (39%), Gaps = 65/309 (21%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD M     + P V +FN +     + K  D  + L + ++  GL  +  TYN 
Sbjct: 413 DDAKHMFDLM-----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 467

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ FC++  ++    +   ++     PD +T   L+   C   ++ EA  LF  +++  
Sbjct: 468 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 527

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +LD   YN +I+G+C+      A +LF  +       GV  EPD  TY+ +I G C ++
Sbjct: 528 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPI----HGV--EPDVQTYNVMISGFCGKS 581

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             ++                                               A  LF  + 
Sbjct: 582 AISD-----------------------------------------------ANVLFHKMK 594

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P+  TYN LIRG    G++D++        L   + S G   D +T  ++ +   
Sbjct: 595 DNGHEPDNSTYNTLIRGCLKAGEIDKS------IELISEMRSNGFSGDAFTIKMVADLIT 648

Query: 371 KIGRVSSGF 379
             GR+   F
Sbjct: 649 D-GRLDKSF 656


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 166/357 (46%), Gaps = 36/357 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL VF  M       P + ++  L   L K +  D  L +F  L  + L PD + YNI
Sbjct: 650 DQALDVFGRM-KEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNI 708

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++N   K  RV     ++  +      PD  T+TSL+  L    R+ EA  +FTK+   G
Sbjct: 709 MVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEG 768

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            E DV  Y +L++ L + G    AL +F  MA         C PD +TYS++ID L KE 
Sbjct: 769 HEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKR------CVPDVVTYSSLIDSLGKEG 822

Query: 251 GS-------ANFLGFSC---MASFSAL-----------NKMAFYFPLVRVQCL--CLNFL 287
                     N +   C   +  +S+L             +  +  + R QC    + + 
Sbjct: 823 RVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYN 882

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L+ GL K  +L +A +L + + + G +P++VTYNILI G+   G +DE + Y      F
Sbjct: 883 NLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESY------F 936

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           KR+   G+ PD+ T+  LI    K+ ++     +F  +    + P  VT+  LI IL
Sbjct: 937 KRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDIL 993



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 145/327 (44%), Gaps = 38/327 (11%)

Query: 63   GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
            G + S   +EA  + D M N +   P + ++  L   L K+   +   ++F ++   G  
Sbjct: 712  GLVKSNRVDEACKLVDSMKN-QNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHE 770

Query: 123  PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
            PD   Y  L++   K G++SH  ++   + +    PD VT++SLI  L  E R+ EA   
Sbjct: 771  PDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYF 830

Query: 183  FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
            F      GC  +V  Y++LI+   + G    AL LFEEM          C P+ +TY+ +
Sbjct: 831  FENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQ------CPPNIVTYNNL 884

Query: 243  IDGLCKEAGSANFL--------GFSCMASFSALN-------KMAF------YFPLVRVQC 281
            + GL K AG  N             C+      N       KM        YF  ++ + 
Sbjct: 885  LSGLAK-AGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKG 943

Query: 282  LC---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
            +    + F  LI+ L K+ KL  A ELF S+   G  P+VVTYN+LI  L   G++ E  
Sbjct: 944  IVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAA 1003

Query: 339  HYETVFLLFKRLNSTGLFPDLYTYNIL 365
                  ++F  +   G  PD  T  I+
Sbjct: 1004 ------MIFHEMKVKGCMPDGITIGIM 1024



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 150/363 (41%), Gaps = 56/363 (15%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +F+ M +     P    +N +   L K   Y + + +F +L    + PD  T+ I +
Sbjct: 236 ALEIFNQMKSF-GCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFV 294

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + F + GR+      +  +++S   P   TFT LI  L     I EA   F  ++   C 
Sbjct: 295 HSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCS 354

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            +V TY TL+NGL + G    A  +F EM   N      C PDAI Y+T+IDGL K AG 
Sbjct: 355 PNVVTYTTLVNGLAKAGRLEEACEVFVEMKENN------CSPDAIAYNTLIDGLGK-AGE 407

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
           A+    +C   F  +       P +R       +  +I  L K  +   A +LF  L   
Sbjct: 408 AD---MAC-GLFKEMKDRGL-VPNLRT------YNIMISVLGKAGRQPEAWQLFHDLKEQ 456

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG------------------ 354
           G +P+V TYN LI  L   GQMD+      V  + K +   G                  
Sbjct: 457 GAVPDVFTYNTLIDVLGKGGQMDK------VLAIIKEMVEKGGECIISRDSNAGHEGTIE 510

Query: 355 ------LFPDL-------YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                  +P L        TYN L++ F   G V     +   +      P  VT+T+L+
Sbjct: 511 GADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLV 570

Query: 402 KIL 404
             L
Sbjct: 571 DGL 573



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 148/355 (41%), Gaps = 24/355 (6%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           + S   +EA   F+ M N+R S P V ++  L   LAK    +    +F  +      PD
Sbjct: 333 VKSGNIDEACKFFNGMKNLRCS-PNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPD 391

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
              YN LI+   K G       +   +      P+  T+  +I  L    R  EA  LF 
Sbjct: 392 AIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFH 451

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
            L+  G   DVFTYNTLI+ L + G     L + +EM    GE  ++       +   I+
Sbjct: 452 DLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGEC-IISRDSNAGHEGTIE 510

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFP-------------LVRVQCL--CLNFLCL 289
           G  +     + LGF  +   +    M+ +               + + +C+   + +  L
Sbjct: 511 GADRTVEYPS-LGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTL 569

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           +DGL K  +L  A  L + + + G  P+VVTY+ L+       Q +E+        LF  
Sbjct: 570 VDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEES------LSLFDE 623

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +   G   D+ TY+++INC CK   V     +FGR+      P    + +L+  L
Sbjct: 624 MVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSL 678



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 141/313 (45%), Gaps = 24/313 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++N L        H D  + L + +      P   TY  L++   K GR+     +L  +
Sbjct: 530 TYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREM 589

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            +    P  VT++SL+       +  E+ +LF ++   GC  DV TY+ +IN LC++   
Sbjct: 590 EKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDV 649

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             AL++F  M     E G+  EP    Y T++  L K+      L        S+L    
Sbjct: 650 DQALDVFGRMK----EEGM--EPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDT 703

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F + +            +++GL K +++  A +L  S+    ++P++ TY  L+ GL   
Sbjct: 704 FVYNI------------MVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKS 751

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G+++E       F +F ++   G  PD+  Y  L++   K G++S   +IF  +      
Sbjct: 752 GRLEEA------FNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCV 805

Query: 392 PDAVTFTSLIKIL 404
           PD VT++SLI  L
Sbjct: 806 PDVVTYSSLIDSL 818



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 28/293 (9%)

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
           L      T +    L +F ++   G  P    YN ++    K G      +V G++ +  
Sbjct: 223 LLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFR 282

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             PDA TF   +       R+  AA    ++   G +  V T+  LI+ L ++G+   A 
Sbjct: 283 IQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEAC 342

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
             F  M N      + C P+ +TY+T+++GL K    A  L  +C            +  
Sbjct: 343 KFFNGMKN------LRCSPNVVTYTTLVNGLAK----AGRLEEAC----------EVFVE 382

Query: 276 LVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
           +    C    + +  LIDGL K  +  +A  LF+ +   GL+PN+ TYNI+I  L   G+
Sbjct: 383 MKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGR 442

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             E       + LF  L   G  PD++TYN LI+   K G++     I   ++
Sbjct: 443 QPEA------WQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMV 489



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 136/314 (43%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   L K    D  +SL + +   G  P   TY+ L+  F K  +      +
Sbjct: 561 PTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSL 620

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++R     D  T++ +I  LC    + +A  +F +++  G E  +  Y TL++ L +
Sbjct: 621 FDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVK 680

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 AL +F E+     E  +V  PD   Y+ +++GL K    +N +  +C    S  
Sbjct: 681 DEKIDFALQIFNELQ----ESSLV--PDTFVYNIMVNGLVK----SNRVDEACKLVDSMK 730

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N+         +      +  L+DGL K  +L+ A  +F  +   G  P+VV Y  L+  
Sbjct: 731 NQ--------NILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDV 782

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           L   G++          ++F+ +      PD+ TY+ LI+   K GRV   +  F   + 
Sbjct: 783 LGKGGKLSHA------LIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSIS 836

Query: 388 SCFTPDAVTFTSLI 401
              TP+   ++SLI
Sbjct: 837 KGCTPNVGVYSSLI 850


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 166/335 (49%), Gaps = 27/335 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYTY 128
           +A  VFD +L  R     +   N     +A+      V S + R+   G   + P  +TY
Sbjct: 38  DARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHTY 95

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKLR 187
            ILI C C+ GR+  GF  LG +++  F  DA+TFT L+K LCA+ R  +A  +   ++ 
Sbjct: 96  AILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMT 155

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             GC  DVF+YN L+ GLC    +  AL L   MA+   + G    PD ++Y+T+++G  
Sbjct: 156 ELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMAD---DRGGGSPPDVVSYNTVLNGFF 212

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           KE  S          ++S  ++M     L  V    + +  +I  LCK   +  A E+  
Sbjct: 213 KEGDSDK--------AYSTYHEMLDRGILPDV----VTYSSIIAALCKAQAMDKAMEVLN 260

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           ++ + G+MP+ +TYN ++ G C+ GQ  E           K++ S G+ P++ TY+ L+N
Sbjct: 261 TMVKNGVMPDCMTYNSILHGYCSSGQPKE------AIGTLKKMRSDGVEPNVVTYSSLMN 314

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             CK GR +    IF  +      PD  T+ +L++
Sbjct: 315 YLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQ 349



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 173/396 (43%), Gaps = 66/396 (16%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGD      ++A   +  ML+ R   P V +++ +   L K +  D  + +   +   G+
Sbjct: 214 EGD-----SDKAYSTYHEMLD-RGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGV 267

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TYN +++ +C  G+       L ++      P+ VT++SL+  LC   R  EA  
Sbjct: 268 MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARK 327

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTG-----HTIVALNLFEEMANGNGEFGV-VC--- 232
           +F  +   G E D+ TY TL+ G    G     H ++ L +   +   +  F + +C   
Sbjct: 328 IFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYA 387

Query: 233 --------------------EPDAITYSTIIDGLCKEAGSAN--FLGFSCMASFSALNKM 270
                                P+ + Y T+ID LCK +GS +   L F  M        +
Sbjct: 388 KQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCK-SGSVDDAMLYFEQMIDEGLTPNI 446

Query: 271 AFYFPLVRVQC-------------------LCLN---FLCLIDGLCKISKLKIARELFQS 308
             Y  L+   C                   +CLN   F  +ID  CK  ++  + +LF  
Sbjct: 447 IVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDL 506

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + R G+ P+++TYN LI G C  G+MDE         L   + S G+ PD+ TY  LIN 
Sbjct: 507 MVRIGVKPDIITYNTLIDGCCLAGKMDEATK------LLASMVSVGVKPDIVTYGTLING 560

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +C++ R+     +F  ++ S  +P+ +T+  +++ L
Sbjct: 561 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 596



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 154/385 (40%), Gaps = 60/385 (15%)

Query: 71  NEALCVFDYMLNMRP--SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
            EAL +   M + R   S P V S+N +     K    D   S +  +   G+ PD  TY
Sbjct: 180 QEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 239

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           + +I   CK   +     VL  ++++   PD +T+ S++   C+  +  EA     K+R 
Sbjct: 240 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS 299

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G E +V TY++L+N LC+ G +  A  +F+ M           EPD  TY T++ G   
Sbjct: 300 DGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG------LEPDIATYRTLLQGYAT 353

Query: 249 EAGSANFLGF--------------------SCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
           +                                A    +++    F  +R   L  N +C
Sbjct: 354 KGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVC 413

Query: 289 ---LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH------ 339
              +ID LCK   +  A   F+ +   GL PN++ Y  LI GLC   + D+ +       
Sbjct: 414 YGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML 473

Query: 340 -----YETVFL------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
                  T+F                   LF  +   G+ PD+ TYN LI+  C  G++ 
Sbjct: 474 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMD 533

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
               +   ++     PD VT+ +LI
Sbjct: 534 EATKLLASMVSVGVKPDIVTYGTLI 558



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 148/341 (43%), Gaps = 47/341 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P    FNIL    AK +  D  + +F ++   GL P+   Y  +I+  CK G V    +
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 432

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              +++    TP+ + +TSLI  LC   +  +A  L  ++   G  L+   +N++I+  C
Sbjct: 433 YFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHC 492

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G  I +  LF+ M       GV  +PD ITY+T+IDG C                   
Sbjct: 493 KEGRVIESEKLFDLMV----RIGV--KPDIITYNTLIDGCC------------LAGKMDE 534

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             K+      V V+   + +  LI+G C++S++  A  LF+ +  +G+ PN++TYNI+++
Sbjct: 535 ATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQ 594

Query: 327 GL----------------CNDGQMDETKHY-------------ETVFLLFKRLNSTGLFP 357
           GL                   G   E   Y             +    +F+ L  T L  
Sbjct: 595 GLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 654

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
           +  T+NI+I    K GR+     +F     +   PD  T++
Sbjct: 655 ETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYS 695



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 149/336 (44%), Gaps = 29/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ M++   + P +  +  L   L     +D    L   +   G+  +   +N 
Sbjct: 428 DDAMLYFEQMIDEGLT-PNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNS 486

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK GRV     +   ++R    PD +T+ +LI   C   ++ EA  L   +   G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CK 248
            + D+ TY TLING CR      AL LF+EM +     GV   P+ ITY+ I+ GL   +
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSS----GV--SPNIITYNIILQGLFHTR 600

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
              +A  L  S   S + L    +                ++ GLCK +    A  +FQ+
Sbjct: 601 RTAAAKELYVSITKSGTQLELSTYNI--------------ILHGLCKNNLTDEALRMFQN 646

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L    L     T+NI+I  L   G+MDE K       LF   ++ GL PD+ TY+++   
Sbjct: 647 LCLTDLQLETRTFNIMIGALLKCGRMDEAKD------LFAAHSANGLVPDVRTYSLMAEN 700

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             + G +     +F  +  +  + D+    S+++ L
Sbjct: 701 LIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKL 736



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 139/313 (44%), Gaps = 27/313 (8%)

Query: 95  ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS 154
           +L G  A  +  D +  + +R+   G  PD ++YN L+   C   R      +L  +   
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192

Query: 155 ---CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 PD V++ +++     E    +A + + ++   G   DV TY+++I  LC+    
Sbjct: 193 RGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAM 252

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A+ +   M       GV+  PD +TY++I+ G C        +G         L KM 
Sbjct: 253 DKAMEVLNTMVKN----GVM--PDCMTYNSILHGYCSSGQPKEAIG--------TLKKMR 298

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
                  V+   + +  L++ LCK  +   AR++F S+ + GL P++ TY  L++G    
Sbjct: 299 SDG----VEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATK 354

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G + E      +  L   +   G+ PD + +NILI  + K  +V    ++F ++      
Sbjct: 355 GALVE------MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLN 408

Query: 392 PDAVTFTSLIKIL 404
           P+ V + ++I +L
Sbjct: 409 PNVVCYGTVIDVL 421



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 107/232 (46%), Gaps = 28/232 (12%)

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT-IVALNLFEEMAN-GNGEFGVVCEPD 235
           +A  +F +L   G    ++  N  +  + R  H+   A++ +  MA  G G+      P 
Sbjct: 38  DARHVFDELLRRGRGASIYGLNRALADVAR--HSPAAAVSRYNRMARAGAGKV----TPT 91

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
             TY+ +I G C  AG  + LGF   A+   + K  F     RV  +   F  L+ GLC 
Sbjct: 92  VHTYAILI-GCCCRAGRLD-LGF---AALGNVVKKGF-----RVDAI--TFTPLLKGLCA 139

Query: 296 ISKLKIAREL-FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
             +   A ++  + +   G +P+V +YN L++GLC     DE +  E + LL    +  G
Sbjct: 140 DKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLC-----DENRSQEALELLHMMADDRG 194

Query: 355 LF--PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               PD+ +YN ++N F K G     +  +  +L     PD VT++S+I  L
Sbjct: 195 GGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAAL 246



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 56/120 (46%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           ++++NI+   L K    D  L +F+ L LT L  +  T+NI+I    K GR+     +  
Sbjct: 621 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFA 680

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
               +   PD  T++ + ++L  +  + E   LF  +   GC  D    N+++  L + G
Sbjct: 681 AHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRG 740


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 162/339 (47%), Gaps = 28/339 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  +F+ M+  +  +P V +F  L   L K    +    +   +   G+ P+  TYN 
Sbjct: 584 EQASALFEEMV-AKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNA 642

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK GR+      L  ++ S   PD++T+ SL+  LC  SR  +A  L ++L+ FG
Sbjct: 643 LVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFG 702

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D  TYN L++GL ++G T  A+ + EEM  G G       PD +TY+T+ID LCK  
Sbjct: 703 WDPDTVTYNILVDGLWKSGQTEQAITVLEEMV-GKGH-----HPDVVTYNTLIDSLCK-- 754

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQ 307
                             ++         +C   N   +  LI+GLCK+ ++  AREL Q
Sbjct: 755 ----------AGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQ 804

Query: 308 SLPRAG--LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
            + R    ++PN++TYN  + GLC    M E        +   R  S  + PD  T++ L
Sbjct: 805 EMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACE----LMRSLRDGSLRVSPDTVTFSTL 860

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           I+  CK G+      +F  ++   + P+ VT+  L+  L
Sbjct: 861 IDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGL 899



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 153/322 (47%), Gaps = 27/322 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  L   L +    D  L L   L   G  PD  TYNIL++   K G+      V
Sbjct: 670 PDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITV 729

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL--RVFGCEL-DVFTYNTLING 204
           L  ++     PD VT+ +LI  LC    + EA  L   +  RV  C + +V TY+ LING
Sbjct: 730 LEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLING 789

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCE--PDAITYSTIIDGLCKEAGSANFLGFSCMA 262
           LC+ G    A  L +EM   +      C+  P+ ITY++ +DGLCK+         S MA
Sbjct: 790 LCKVGRIDEARELIQEMMRKS------CDVLPNIITYNSFLDGLCKQ---------SMMA 834

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
               L + +     +RV    + F  LIDGLCK  +   A  +F  +   G +PNVVTYN
Sbjct: 835 EACELMR-SLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYN 893

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           +L+ GLC      +T   E    + + +   G+ PD+ TY++L++ FCK   V     + 
Sbjct: 894 VLMNGLC------KTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELL 947

Query: 383 GRILPSCFTPDAVTFTSLIKIL 404
             +     TP+ VTF S+I  L
Sbjct: 948 HGMASRGCTPNVVTFNSIIDGL 969



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 153/318 (48%), Gaps = 25/318 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFK-RLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           V  +NI+   L +       L +F+  +   G+ P   TYN +IN  CK   +  G  + 
Sbjct: 180 VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELF 239

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
             ++     PD VT+ +LI  LC    + EA  L   +    C  +V TY+ LINGLC+ 
Sbjct: 240 EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKV 299

Query: 209 GHTIVALNLFEEMANGNGEFGVVCE--PDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           G    A  L +EM   +      C+  P+ ITY++ +DGLCK++ +A     +C    S 
Sbjct: 300 GRIDEARELIQEMTRKS------CDVLPNIITYNSFLDGLCKQSMTAE----ACELMRSL 349

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            +        +RV    + F  LIDGLCK  ++  A  +F  +   G +PNV+TYN L+ 
Sbjct: 350 RDGS------LRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 403

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC   +M      E    + + +   G+ PD+ TY++L++ FCK  RV     +   + 
Sbjct: 404 GLCKADKM------ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMA 457

Query: 387 PSCFTPDAVTFTSLIKIL 404
               TP+ VTF S+I  L
Sbjct: 458 SRGCTPNVVTFNSIIDGL 475



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 164/336 (48%), Gaps = 30/336 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +F+ L   L K    D   S+F  +   G  P+  TYN L+N  CK  ++     +
Sbjct: 358 PDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAM 417

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  ++    TPD +T++ L+   C  SR+ EA  L   +   GC  +V T+N++I+GLC+
Sbjct: 418 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 477

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFL--------- 256
           +  +  A  +F++MA  +G       PD ITY T+IDGL +   AG A  L         
Sbjct: 478 SDRSGEAFQMFDDMALKHGLV-----PDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDT 532

Query: 257 -GFS-CMASFSALNKMA----FYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQS 308
             F+ C+   S L  ++     Y  ++ ++ +   + F  LI G CK    + A  LF+ 
Sbjct: 533 YAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEE 592

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +    L P+V+T+  LI GLC  GQ++  +       +   + + G+ P++ TYN L++ 
Sbjct: 593 MVAKNLQPDVMTFGALIDGLCKAGQVEAARD------ILDLMGNLGVPPNVVTYNALVHG 646

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            CK GR+         ++ S   PD++T+ SL+  L
Sbjct: 647 LCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYAL 682



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 143/297 (48%), Gaps = 34/297 (11%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P   +F+ L   L K    D   ++F  +   G  P+  TYN+L+N  CK  ++     +
Sbjct: 852  PDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAM 911

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            +  ++    TPD +T++ L+   C  S + EA  L   +   GC  +V T+N++I+GLC+
Sbjct: 912  IESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 971

Query: 208  TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE--AGSANFLGFSCMASFS 265
            +  +  A  +F++M   +G       PD ITY T+IDGL +   AG A  L         
Sbjct: 972  SDQSGEAFQMFDDMTLKHG-----LAPDKITYCTLIDGLFRTGWAGQAEVL-------LD 1019

Query: 266  ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            A+     Y            F C I+GL K+    ++R L + L    L+P+ VT+NILI
Sbjct: 1020 AMPDPDTYA-----------FNCCINGLSKLGD--VSRALHRML-ELELVPDKVTFNILI 1065

Query: 326  RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
             G C  G      ++E    LF+ + +  L PD+ T+  LI+  CK G+V + + I 
Sbjct: 1066 AGACKAG------NFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDIM 1116



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 132/319 (41%), Gaps = 32/319 (10%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL--FPDRYTYNILINCFCKMGRVSHGF 145
            P + ++N     L K         L + L    L   PD  T++ LI+  CK G+     
Sbjct: 815  PNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEAC 874

Query: 146  VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
             V   ++   + P+ VT+  L+  LC   ++  A A+   +   G   DV TY+ L++  
Sbjct: 875  NVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAF 934

Query: 206  CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
            C+  H   AL L   MA+        C P+ +T+++IIDGLCK   S          +F 
Sbjct: 935  CKASHVDEALELLHGMASRG------CTPNVVTFNSIIDGLCKSDQSGE--------AFQ 980

Query: 266  ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
              + M     L   +   + +  LIDGL +      A  L  ++P     P+   +N  I
Sbjct: 981  MFDDMTLKHGLAPDK---ITYCTLIDGLFRTGWAGQAEVLLDAMPD----PDTYAFNCCI 1033

Query: 326  RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
             GL   G +    H         R+    L PD  T+NILI   CK G       +F  +
Sbjct: 1034 NGLSKLGDVSRALH---------RMLELELVPDKVTFNILIAGACKAGNFEQASALFEEM 1084

Query: 386  LPSCFTPDAVTFTSLIKIL 404
            +     PD +TF +LI  L
Sbjct: 1085 VAKNLQPDVMTFGALIDGL 1103



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 104/235 (44%), Gaps = 37/235 (15%)

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           +F++N  +N L ++G    A++LF             C P+  TYST++    K  G   
Sbjct: 111 IFSFNKYLNLLVKSGSPAKAIDLFRS------RLPPRCRPNHFTYSTLLRATYKAGGDVE 164

Query: 255 -FLGF--------------------SCMASFSALNKMAFYFPLVR--VQCLCLNFLCLID 291
             LGF                     C A  +A     F   + R  V    + +  +I+
Sbjct: 165 RTLGFFRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIIN 224

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GLCK ++L    ELF+ L   G  P+VVTYN LI  LC  G ++E +       L   ++
Sbjct: 225 GLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARR------LHGDMS 278

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL-PSC-FTPDAVTFTSLIKIL 404
           S    P++ TY++LIN  CK+GR+     +   +   SC   P+ +T+ S +  L
Sbjct: 279 SRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 333


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 165/363 (45%), Gaps = 56/363 (15%)

Query: 71  NEALCVFDYM--LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
            EAL +F+ M  L   P+R    S N +   L +    D    +F  +    + PD ++Y
Sbjct: 132 EEALLLFNEMERLGCTPNR---RSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSY 188

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            ILI+   K G+++  + +  R+L S  TP AVT+  +I  +C    + EA  LF  +R 
Sbjct: 189 GILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRS 248

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            GC    FT+N LI+  C+ G    A  L + M + +G       PD +TYST+I GLC 
Sbjct: 249 KGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTD-DGHV-----PDVVTYSTLISGLCS 302

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISKLKIARELF 306
            A                 +       +V+ QC    +    LI GLCK  ++K ARE+ 
Sbjct: 303 IA--------------RVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVL 348

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL--------------------- 345
            ++  +G  P+VVTYN L+ G C  GQ +  +   +  +                     
Sbjct: 349 DAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKA 408

Query: 346 --------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   +F ++ S+G  P+L+TY  LI  FC  G+V  G  +FG ++ +  +PD V +
Sbjct: 409 NRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVY 468

Query: 398 TSL 400
            +L
Sbjct: 469 GTL 471



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 155/327 (47%), Gaps = 30/327 (9%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +N R   P   S+ IL   LAK    +    LF++L  +G+ P    Y  LI+  C    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +   + R    P  VT+  +I   C    + EA  L  K+   G   DV TYNT
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           +++GLC++G    AL LF EM        + C P+  +++TII GLC++           
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMER------LGCTPNRRSHNTIILGLCQQ----------- 163

Query: 261 MASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
               S +++    F  +  + +     ++  LIDGL K  KL  A +LF+ +  +G+ P+
Sbjct: 164 ----SKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPS 219

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
            VTYN++I G+C    +DE         LFK + S G  P  +T+NILI+  CK G++  
Sbjct: 220 AVTYNVVIHGMCLAYTLDEA------LELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDE 273

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKIL 404
            F +  R+      PD VT+++LI  L
Sbjct: 274 AFRLLKRMTDDGHVPDVVTYSTLISGL 300



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 154/336 (45%), Gaps = 29/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  +F  +L+   + P   ++  L   L     +D    LF  +N  G  P   TYN+
Sbjct: 27  NDARDLFQKLLHSGVT-PSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNV 85

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK G +     ++ +++     PD VT+ +++  LC   R+ EA  LF ++   G
Sbjct: 86  IIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERLG 145

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +  ++NT+I GLC+      A  +F EM   +        PD+ +Y  +IDGL K A
Sbjct: 146 CTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD------IPPDSWSYGILIDGLAK-A 198

Query: 251 GSAN--FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           G  N  +  F  M   S +   A  + +V            I G+C    L  A ELF+S
Sbjct: 199 GKLNEAYKLFRRMLD-SGITPSAVTYNVV------------IHGMCLAYTLDEALELFKS 245

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G  P+  T+NILI   C  G+MDE       F L KR+   G  PD+ TY+ LI+ 
Sbjct: 246 MRSKGCRPSRFTFNILIDAHCKRGKMDEA------FRLLKRMTDDGHVPDVVTYSTLISG 299

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            C I RV     +   ++     P  VT  +LI  L
Sbjct: 300 LCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGL 335



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 111/258 (43%), Gaps = 22/258 (8%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  +P V + N L   L K         +   +  +G  PD  TYN L++  C+ G+   
Sbjct: 319 RQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTER 378

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +L  ++     P+ VT+T+L+  LC  +R+ EA  +F +++  GC  ++FTY  LI 
Sbjct: 379 ARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALIL 438

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVC---EPDAITYSTIIDGLCKEAGSANFLGFSC 260
           G C  G     L LF EM         VC    PD + Y T+   LCK   SA  L    
Sbjct: 439 GFCSAGQVDGGLKLFGEM---------VCAGISPDHVVYGTLAAELCKSGRSARALEI-L 488

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                +L   A+   + R           +DGL    K+++A    + + R G +P    
Sbjct: 489 REGRESLRSEAWGDEVYRFA---------VDGLLDAGKMEMALGFVRDMVRGGQLPAPER 539

Query: 321 YNILIRGLCNDGQMDETK 338
              L+ GLC  GQ  E +
Sbjct: 540 CASLVAGLCKSGQGGEAR 557



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 108/279 (38%), Gaps = 40/279 (14%)

Query: 46  RASLEQFLKERCKSSGEGDITSITPN-------------EALCVFDYMLNMRPSRPPVTS 92
           R  LE  +K +CK       T +T N             EA  V D M++   S P V +
Sbjct: 310 RHLLEDMVKRQCKP------TVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQS-PDVVT 362

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N L     +    +    L   +   GL P+  TY  L++  CK  R+     V  ++ 
Sbjct: 363 YNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMK 422

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   P+  T+T+LI   C+  ++     LF ++   G   D   Y TL   LC++G + 
Sbjct: 423 SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSA 482

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            AL +  E   G          D + Y   +DGL  +AG                  + F
Sbjct: 483 RALEILRE---GRESLRSEAWGDEV-YRFAVDGLL-DAGKMEM-------------ALGF 524

Query: 273 YFPLVRVQCLCLNFLC--LIDGLCKISKLKIARELFQSL 309
              +VR   L     C  L+ GLCK  +   AR + + +
Sbjct: 525 VRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563


>gi|224128023|ref|XP_002329235.1| predicted protein [Populus trichocarpa]
 gi|222871016|gb|EEF08147.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 162/339 (47%), Gaps = 46/339 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-HYDTVLSLFKRLNLTGLFPDRYTYN 129
           ++AL  F++ML+ +P  P +  F  L   + K + +YD V+SL + + L GL P+ YT N
Sbjct: 66  DDALASFNHMLHRKP-LPCIIQFTKLLSAIVKMRQYYDAVISLSRPMELAGLSPNTYTLN 124

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           ILINCFCK+  V  GF VL ++++    PD V FT+LI  LC   +  +A  LF +    
Sbjct: 125 ILINCFCKLQHVDLGFSVLAKVIKLGLQPDVVPFTTLINGLCKVGKFSQAVELFDETVER 184

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G       YN+LI+GLC       A  +  EM + N        PD +T++ ++D  CKE
Sbjct: 185 G-------YNSLIHGLCNCSQWKEASAILNEMTSLN------IMPDIVTFNVLVDTFCKE 231

Query: 250 AGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFL--------------------- 287
              +   G    M   S    +  Y  L+    L +  +                     
Sbjct: 232 GKVSEAQGVLKTMTEMSVELDVVTYNSLMYGHSLWMEVVEARKLFGFMITKGCKPNVFSY 291

Query: 288 -CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LI+G CK   +  A++LF  +   GL PN+V+YN    G C  G++ E +       L
Sbjct: 292 NILINGYCKAEMIDEAKQLFNEMIHQGLTPNIVSYN--THGFCQLGKLREAQE------L 343

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            + +++ G  PDL TY+IL++ FCK G   +   +F  +
Sbjct: 344 NENMHTNGNLPDLCTYSILLDGFCKQGNHIAARKLFSEL 382



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 22/171 (12%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F +M+  +  +P V S+NIL     K +  D    LF  +   GL P+  +YN  
Sbjct: 271 EARKLFGFMIT-KGCKPNVFSYNILINGYCKAEMIDEAKQLFNEMIHQGLTPNIVSYNT- 328

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG- 190
            + FC++G++     +   +  +   PD  T++ L+   C +   + A  LF++L V G 
Sbjct: 329 -HGFCQLGKLREAQELNENMHTNGNLPDLCTYSILLDGFCKQGNHIAARKLFSELFVQGL 387

Query: 191 ------------------CELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
                             C  + ++YN +I G  R      A+ L  EM +
Sbjct: 388 QRLLDEALETFRKMEEDGCPPNEWSYNVIIRGFLRHRDESRAVQLIGEMRD 438


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/324 (30%), Positives = 148/324 (45%), Gaps = 30/324 (9%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           + +R   P V S++ +     +      VL L + + + GL P+ YTYN +I   CK G+
Sbjct: 279 MELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGK 338

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V+    VL  ++     PD V +T+LI   C    +  A  LF +++      D  TY  
Sbjct: 339 VAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTA 398

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVC---EPDAITYSTIIDGLCKEAGSANFLG 257
           +I GLC+TG  + A  LF EM         VC   EPD +TY+ +IDG CKE        
Sbjct: 399 VICGLCQTGRVMEADKLFHEM---------VCKRLEPDEVTYTALIDGYCKEGKMKE--- 446

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
                +FS  N+M        +    + +  L DGLCK  ++  A EL   + R GL  N
Sbjct: 447 -----AFSLHNQMLQMGLTPNI----VTYTALADGLCKCGEVDTANELLHEMCRKGLELN 497

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           + TYN L+ GLC  G +D+         L K +   G  PD  TY  L++ +CK   +  
Sbjct: 498 IYTYNSLVNGLCKAGNIDQA------VKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVR 551

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
              +  ++L     P  VTF  L+
Sbjct: 552 AHELLRQMLDRELQPTVVTFNVLM 575



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 145/311 (46%), Gaps = 24/311 (7%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            S+NI+   L +         L  ++ L G  PD  +Y+ +IN +C++G +     ++  
Sbjct: 254 ASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEE 313

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +      P+  T+  +I  LC   ++ EA  +  ++   G   D   Y TLI+G C+ G+
Sbjct: 314 MQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGN 373

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A  LF+EM            PD ITY+ +I GLC+            M +    ++M
Sbjct: 374 VSSAYRLFDEMQKRK------ISPDFITYTAVICGLCQTG--------RVMEADKLFHEM 419

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                  R++   + +  LIDG CK  K+K A  L   + + GL PN+VTY  L  GLC 
Sbjct: 420 V----CKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCK 475

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G++D      T   L   +   GL  ++YTYN L+N  CK G +     +   +  + F
Sbjct: 476 CGEVD------TANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGF 529

Query: 391 TPDAVTFTSLI 401
            PDAVT+T+L+
Sbjct: 530 HPDAVTYTTLM 540



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 159/346 (45%), Gaps = 34/346 (9%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD M   R   P   ++  +   L +T        LF  +    L PD  TY  LI+ +
Sbjct: 380 LFDEM-QKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGY 438

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK G++   F +  ++L+   TP+ VT+T+L   LC    +  A  L  ++   G EL++
Sbjct: 439 CKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNI 498

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           +TYN+L+NGLC+ G+   A+ L ++M            PDA+TY+T++D  CK       
Sbjct: 499 YTYNSLVNGLCKAGNIDQAVKLMKDMEVAG------FHPDAVTYTTLMDAYCKSR----- 547

Query: 256 LGFSCMASFSALNKMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                + +   L +M     L R +Q   + F  L++G C    L+   +L + +   G+
Sbjct: 548 ---EMVRAHELLRQM-----LDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGI 599

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
           MPN  TYN LI+  C    M  T        +++ + + G+ PD  TYNILI   CK   
Sbjct: 600 MPNATTYNSLIKQYCIRNNMRATTE------IYRGMCAKGVVPDGNTYNILIKGHCKARN 653

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           +   + +   ++   F     ++ +LI       K LE    F Q+
Sbjct: 654 MKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQM 699



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 133/330 (40%), Gaps = 33/330 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  + + ML M  + P + ++  L   L K    DT   L   +   GL  + YTYN 
Sbjct: 445 KEAFSLHNQMLQMGLT-PNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNS 503

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  CK G +     ++  +  + F PDAVT+T+L+   C    ++ A  L  ++    
Sbjct: 504 LVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRE 563

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--- 247
            +  V T+N L+NG C +G       L + M     E G++  P+A TY+++I   C   
Sbjct: 564 LQPTVVTFNVLMNGFCMSGMLEDGEKLLKWML----EKGIM--PNATTYNSLIKQYCIRN 617

Query: 248 -KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
              A +  + G          N                 +  LI G CK   +K A  L 
Sbjct: 618 NMRATTEIYRGMCAKGVVPDGN----------------TYNILIKGHCKARNMKEAWFLH 661

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           + +   G    V +YN LI+G     +  E +       LF+++   GL  D   YNI  
Sbjct: 662 RDMVGKGFNLTVSSYNALIKGFYKRKKFLEARE------LFEQMRREGLVADREIYNIFA 715

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
           +     G++     +    +  C   D  T
Sbjct: 716 DINYDEGKMELTLELCDEAIEKCLVGDIQT 745



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
           +  +KIA ++F   P  G+  N  +YNI+   LC  G++ E         L  ++   G 
Sbjct: 231 LDGIKIALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQ------LLLQMELRGC 284

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            PD+ +Y+ +IN +C++G +     +   +      P+  T+  +I +L
Sbjct: 285 IPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLL 333



 Score = 41.6 bits (96), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           L +   L  AR+LF  +   GL+ +V + N+ I  L  D  +D  K    VF+ F  +  
Sbjct: 192 LVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSED--LDGIKIALKVFVEFPEV-- 247

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G+  +  +YNI+ +  C++GRV     +  ++      PD ++++++I
Sbjct: 248 -GVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVI 295


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 165/336 (49%), Gaps = 27/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYT 127
            +A  VFD +L  R     +   N     +A+      V S + R+   G   + P  +T
Sbjct: 37  EDARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHT 94

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKL 186
           Y ILI C C+ GR+  GF  LG +++  F  DA+TFT L+K LCA+ R  +A  +   ++
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRM 154

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              GC  DVF+YN L+ GLC    +  AL L   MA+  G       PD ++Y+T+++G 
Sbjct: 155 TELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGS---PPDVVSYNTVLNGF 211

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            KE  S          ++S  ++M     L  V    + +  +I  LCK   +  A E+ 
Sbjct: 212 FKEGDSDK--------AYSTYHEMLDRGILPDV----VTYSSIIAALCKAQAMDKAMEVL 259

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            ++ + G+MP+ +TYN ++ G C+ GQ  E           K++ S G+ P++ TY+ L+
Sbjct: 260 NTMVKNGVMPDCMTYNSILHGYCSSGQPKE------AIGTLKKMRSDGVEPNVVTYSSLM 313

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           N  CK GR +    IF  +      PD  T+ +L++
Sbjct: 314 NYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQ 349



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 173/396 (43%), Gaps = 66/396 (16%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGD      ++A   +  ML+ R   P V +++ +   L K +  D  + +   +   G+
Sbjct: 214 EGD-----SDKAYSTYHEMLD-RGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGV 267

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TYN +++ +C  G+       L ++      P+ VT++SL+  LC   R  EA  
Sbjct: 268 MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARK 327

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTG-----HTIVALNLFEEMANGNGEFGV-VC--- 232
           +F  +   G E D+ TY TL+ G    G     H ++ L +   +   +  F + +C   
Sbjct: 328 IFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYA 387

Query: 233 --------------------EPDAITYSTIIDGLCKEAGSAN--FLGFSCMASFSALNKM 270
                                P+ + Y T+ID LCK +GS +   L F  M        +
Sbjct: 388 KQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCK-SGSVDDAMLYFEQMIDEGLTPNI 446

Query: 271 AFYFPLVRVQC-------------------LCLN---FLCLIDGLCKISKLKIARELFQS 308
             Y  L+   C                   +CLN   F  +ID  CK  ++  + +LF  
Sbjct: 447 IVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDL 506

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + R G+ P+++TYN LI G C  G+MDE         L   + S G+ PD+ TY  LIN 
Sbjct: 507 MVRIGVKPDIITYNTLIDGCCLAGKMDEATK------LLASMVSVGVKPDIVTYGTLING 560

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +C++ R+     +F  ++ S  +P+ +T+  +++ L
Sbjct: 561 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 596



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 154/385 (40%), Gaps = 60/385 (15%)

Query: 71  NEALCVFDYMLNMRP--SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
            EAL +   M + R   S P V S+N +     K    D   S +  +   G+ PD  TY
Sbjct: 180 QEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 239

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           + +I   CK   +     VL  ++++   PD +T+ S++   C+  +  EA     K+R 
Sbjct: 240 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS 299

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G E +V TY++L+N LC+ G +  A  +F+ M           EPD  TY T++ G   
Sbjct: 300 DGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG------LEPDIATYRTLLQGYAT 353

Query: 249 EAGSANFLGF--------------------SCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
           +                                A    +++    F  +R   L  N +C
Sbjct: 354 KGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVC 413

Query: 289 ---LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH------ 339
              +ID LCK   +  A   F+ +   GL PN++ Y  LI GLC   + D+ +       
Sbjct: 414 YGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEML 473

Query: 340 -----YETVFL------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
                  T+F                   LF  +   G+ PD+ TYN LI+  C  G++ 
Sbjct: 474 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMD 533

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
               +   ++     PD VT+ +LI
Sbjct: 534 EATKLLASMVSVGVKPDIVTYGTLI 558



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 148/341 (43%), Gaps = 47/341 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P    FNIL    AK +  D  + +F ++   GL P+   Y  +I+  CK G V    +
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 432

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              +++    TP+ + +TSLI  LC   +  +A  L  ++   G  L+   +N++I+  C
Sbjct: 433 YFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHC 492

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G  I +  LF+ M       GV  +PD ITY+T+IDG C                   
Sbjct: 493 KEGRVIESEKLFDLMV----RIGV--KPDIITYNTLIDGCC------------LAGKMDE 534

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             K+      V V+   + +  LI+G C++S++  A  LF+ +  +G+ PN++TYNI+++
Sbjct: 535 ATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQ 594

Query: 327 GL----------------CNDGQMDETKHY-------------ETVFLLFKRLNSTGLFP 357
           GL                   G   E   Y             +    +F+ L  T L  
Sbjct: 595 GLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 654

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
           +  T+NI+I    K GR+     +F     +   PD  T++
Sbjct: 655 ETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYS 695



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 149/336 (44%), Gaps = 29/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ M++   + P +  +  L   L     +D    L   +   G+  +   +N 
Sbjct: 428 DDAMLYFEQMIDEGLT-PNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNS 486

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK GRV     +   ++R    PD +T+ +LI   C   ++ EA  L   +   G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CK 248
            + D+ TY TLING CR      AL LF+EM +     GV   P+ ITY+ I+ GL   +
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSS----GV--SPNIITYNIILQGLFHTR 600

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
              +A  L  S   S + L    +                ++ GLCK +    A  +FQ+
Sbjct: 601 RTAAAKELYVSITKSGTQLELSTYNI--------------ILHGLCKNNLTDEALRMFQN 646

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L    L     T+NI+I  L   G+MDE K       LF   ++ GL PD+ TY+++   
Sbjct: 647 LCLTDLQLETRTFNIMIGALLKCGRMDEAKD------LFAAHSANGLVPDVRTYSLMAEN 700

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             + G +     +F  +  +  + D+    S+++ L
Sbjct: 701 LIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKL 736



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 139/313 (44%), Gaps = 27/313 (8%)

Query: 95  ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS 154
           +L G  A  +  D +  + +R+   G  PD ++YN L+   C   R      +L  +   
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192

Query: 155 ---CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 PD V++ +++     E    +A + + ++   G   DV TY+++I  LC+    
Sbjct: 193 RGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAM 252

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A+ +   M       GV+  PD +TY++I+ G C        +G         L KM 
Sbjct: 253 DKAMEVLNTMVKN----GVM--PDCMTYNSILHGYCSSGQPKEAIG--------TLKKMR 298

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
                  V+   + +  L++ LCK  +   AR++F S+ + GL P++ TY  L++G    
Sbjct: 299 SDG----VEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATK 354

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G + E      +  L   +   G+ PD + +NILI  + K  +V    ++F ++      
Sbjct: 355 GALVE------MHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLN 408

Query: 392 PDAVTFTSLIKIL 404
           P+ V + ++I +L
Sbjct: 409 PNVVCYGTVIDVL 421



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 107/232 (46%), Gaps = 28/232 (12%)

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT-IVALNLFEEMAN-GNGEFGVVCEPD 235
           +A  +F +L   G    ++  N  +  + R  H+   A++ +  MA  G G+      P 
Sbjct: 38  DARHVFDELLRRGRGASIYGLNRALADVAR--HSPAAAVSRYNRMARAGAGKV----TPT 91

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
             TY+ +I G C  AG  + LGF   A+   + K  F     RV  +   F  L+ GLC 
Sbjct: 92  VHTYAILI-GCCCRAGRLD-LGF---AALGNVVKKGF-----RVDAI--TFTPLLKGLCA 139

Query: 296 ISKLKIAREL-FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
             +   A ++  + +   G +P+V +YN L++GLC     DE +  E + LL    +  G
Sbjct: 140 DKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLC-----DENRSQEALELLHMMADDRG 194

Query: 355 LF--PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               PD+ +YN ++N F K G     +  +  +L     PD VT++S+I  L
Sbjct: 195 GGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAAL 246



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 56/120 (46%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           ++++NI+   L K    D  L +F+ L LT L  +  T+NI+I    K GR+     +  
Sbjct: 621 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFA 680

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
               +   PD  T++ + ++L  +  + E   LF  +   GC  D    N+++  L + G
Sbjct: 681 AHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRG 740


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 155/321 (48%), Gaps = 53/321 (16%)

Query: 116 LNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175
           + L GL P+  T NILINCFC++ RV  GF VL + ++    P  VTFT+LI  L    +
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
             +A  LF  +   GC+ D +TY T+INGLC+ G T +A  LF++M          C+ +
Sbjct: 61  FAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAG------CQLN 114

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC---LNFLCLIDG 292
            +TYST+I  LCK               +  +N+    F  ++ + +      +  LI G
Sbjct: 115 VVTYSTLIHSLCK---------------YRRVNEALDIFSYMKAKDISPTIFTYTSLIQG 159

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM----------------DE 336
           LC  S+ K A  L   +    +MPNVVT+N+L+   C +G++                 +
Sbjct: 160 LCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPD 219

Query: 337 TKHYETVFL-------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
              Y ++               LF  + + G  PD+++Y+ILIN +CK  R+     +F 
Sbjct: 220 VVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFN 279

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            ++    TP+ V++ +LI  L
Sbjct: 280 EMIHQGSTPNNVSYNTLIHGL 300



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 154/341 (45%), Gaps = 35/341 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + +F  L   L K   +   + LF  +   G  PD YTY  +IN  CK+G  +    
Sbjct: 42  QPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAG 101

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++  +    + VT+++LI  LC   R+ EA  +F+ ++       +FTY +LI GLC
Sbjct: 102 LFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLC 161

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-------- 258
                  A  L  EM + N        P+ +T++ ++D  CKE       G         
Sbjct: 162 NFSRWKEASALLNEMTSLN------IMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMG 215

Query: 259 ---------SCMASFSALNKMAFYFPLVRVQCL------CLNFLCLIDGLCKISKLKIAR 303
                    S M  +S   ++     L  V           ++  LI+G CK  ++  A+
Sbjct: 216 VEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAK 275

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           +LF  +   G  PN V+YN LI GLC  G++ E +       LFK +++ G  P+LYTY 
Sbjct: 276 QLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQD------LFKNMHTNGNLPNLYTYA 329

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           IL++ FCK G +   F +F  +  +   P+ V +  L+  +
Sbjct: 330 ILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAM 370



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 156/349 (44%), Gaps = 36/349 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEAL +F YM   +   P + ++  L   L     +    +L   +    + P+  T+N+
Sbjct: 132 NEALDIFSYM-KAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNV 190

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ FCK G+V     VL  +      PD VT+ SL+      + ++EA  LF  +   G
Sbjct: 191 LVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKG 250

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--- 247
           C+ DVF+Y+ LING C+      A  LF EM +          P+ ++Y+T+I GLC   
Sbjct: 251 CKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGST------PNNVSYNTLIHGLCQLG 304

Query: 248 --KEAGS-----------ANFLGFSCM-ASFSALNKMAFYFPLVR-VQCLCLN-----FL 287
             +EA              N   ++ +   F     +   F L R +Q   L      + 
Sbjct: 305 RLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYN 364

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L++ +CK   LK ARELF  L   GL PNV  Y  +I GLC +G +DE          F
Sbjct: 365 ILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALE------AF 418

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
           + +   G  PD ++YN++I  F +    S    + G +    F  DA T
Sbjct: 419 RNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 143/317 (45%), Gaps = 28/317 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +++ L   L K +  +  L +F  +    + P  +TY  LI   C   R      +L 
Sbjct: 115 VVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLN 174

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      P+ VTF  L+   C E +++ A  +   +   G E DV TYN+L+ G     
Sbjct: 175 EMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWT 234

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSAL 267
             + A  LF+ M          C+PD  +YS +I+G CK      A  L    +   S  
Sbjct: 235 EVVEARKLFDVMITKG------CKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTP 288

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N +++                LI GLC++ +L+ A++LF+++   G +PN+ TY IL+ G
Sbjct: 289 NNVSYN--------------TLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDG 334

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  G + +       F LF+ + ST L P+L  YNIL+N  CK G +     +F  +  
Sbjct: 335 FCKQGYLGK------AFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFV 388

Query: 388 SCFTPDAVTFTSLIKIL 404
               P+   +T++I  L
Sbjct: 389 IGLQPNVQIYTTIINGL 405


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 162/315 (51%), Gaps = 25/315 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N +   L+K+   D  + L + +   G  P+ ++YN +++ FCK  RV +   +
Sbjct: 42  PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 101

Query: 148 LGR-ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L + ++R C  PD V++T++I  LC   ++ EA  +  K+   GC+ +V TY TL++G C
Sbjct: 102 LEQMVMRGC-PPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFC 160

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G    A+ L  +M     E G    P+AITY+ I+ GLC    S   L  S +  F  
Sbjct: 161 RVGDLDGAVELVRKMT----ERGY--RPNAITYNNIMHGLC----SGRKLD-SALQLFKE 209

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           + +     P V        +  ++D L K  K+  A  L +++   G  PNVVTY+ L+ 
Sbjct: 210 MEESGSCPPDV------FTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLH 263

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G++DE         L +R+  +G  P++ TYN +I+  CK+GR+   + +   ++
Sbjct: 264 GLCKAGKLDEAT------ALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMV 317

Query: 387 PSCFTPDAVTFTSLI 401
                P+ VT+T L+
Sbjct: 318 DGGCQPNVVTYTVLL 332



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 169/357 (47%), Gaps = 34/357 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + AL +F  M       P V +++ +   L K+   D    L + +   G  P+  TY+ 
Sbjct: 201 DSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSS 260

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G++     +L R+ RS  +P+ VT+ ++I   C   RI EA  L  ++   G
Sbjct: 261 LLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGG 320

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+ +V TY  L++  C+ G    A+ L E M     E G V  P+  TY++++D  CK+ 
Sbjct: 321 CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMV----EKGYV--PNLFTYNSLLDMFCKKD 374

Query: 251 GS-------ANFLGFSCMASFSALNKM---------AFYFPLVRVQCLCLN-------FL 287
                    ++ +   C+ +  + N +              L+  Q L  N       F 
Sbjct: 375 EVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 434

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            +ID +CK  ++ IA ELF  +  +G  PN+VTYN L+ GLC   + D+ +     +LL 
Sbjct: 435 TIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAE-----YLLR 489

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +     G  PD+ TYN +I+  CK  RV   + +F ++L     PD VT++ +I  L
Sbjct: 490 EMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSL 546



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 148/317 (46%), Gaps = 27/317 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L     K    +    L   +   G  P+  +YN +I   CK  +V  G ++
Sbjct: 358 PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLL 417

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++L +   PD VTF ++I  +C   R+  A  LF  ++  GC  ++ TYN+L++GLC+
Sbjct: 418 LEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 477

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
           +     A  L  EM    G     C PD ITY+T+IDGLCK      A  L    ++   
Sbjct: 478 SRRFDQAEYLLREMTRKQG-----CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 532

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           A + + +                +I  LCK   +  A  + + + + G  P  +TY  LI
Sbjct: 533 APDDVTYSI--------------VISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLI 578

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C  G +D  K  E + LL     S G +PD+ T++I I+   K GR+     +   +
Sbjct: 579 DGFCKTGNLD--KALEILQLLL----SKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETM 632

Query: 386 LPSCFTPDAVTFTSLIK 402
           L +   PD VT+ +L+K
Sbjct: 633 LRAGLVPDTVTYNTLLK 649



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 149/330 (45%), Gaps = 27/330 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++ +L     K    +  + L + +   G  P+ +TYN L++ FCK   V     
Sbjct: 322 QPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQ 381

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +++    P+ V++ ++I  LC  +++ E   L  ++    C  D+ T+NT+I+ +C
Sbjct: 382 LLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMC 441

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASF 264
           +T    +A  LF  +          C P+ +TY++++ GLCK      A +L        
Sbjct: 442 KTYRVDIAYELFNLIQESG------CTPNLVTYNSLVHGLCKSRRFDQAEYL-------L 488

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             + +     P +      + +  +IDGLCK  ++  A +LF  +   GL P+ VTY+I+
Sbjct: 489 REMTRKQGCSPDI------ITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIV 542

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I  LC    MDE  +   + L        G  P   TY  LI+ FCK G +     I   
Sbjct: 543 ISSLCKWRFMDEANNVLELML------KNGFDPGAITYGTLIDGFCKTGNLDKALEILQL 596

Query: 385 ILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
           +L     PD VTF+  I  L      RQ  
Sbjct: 597 LLSKGSYPDVVTFSIFIDWLSKRGRLRQAG 626



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 157/332 (47%), Gaps = 30/332 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL + + M+ MR   P V S+  +   L K    D    +  ++   G  P+  TY  L+
Sbjct: 98  ALWLLEQMV-MRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLV 156

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG-C 191
           + FC++G +     ++ ++    + P+A+T+ +++  LC+  ++  A  LF ++   G C
Sbjct: 157 DGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSC 216

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DVFTY+T+++ L ++G    A  L E M +        C P+ +TYS+++ GLCK AG
Sbjct: 217 PPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKG------CSPNVVTYSSLLHGLCK-AG 269

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSL 309
             +                A    + R  C    + +  +IDG CK+ ++  A  L + +
Sbjct: 270 KLD-------------EATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM 316

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G  PNVVTY +L+   C  G+       E    L + +   G  P+L+TYN L++ F
Sbjct: 317 VDGGCQPNVVTYTVLLDAFCKCGKA------EDAIGLVEVMVEKGYVPNLFTYNSLLDMF 370

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK   V     +   ++     P+ V++ ++I
Sbjct: 371 CKKDEVERACQLLSSMIQKGCVPNVVSYNTVI 402



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 139/310 (44%), Gaps = 50/310 (16%)

Query: 88  PPVTSFNILFGCLAK-TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           P V S+N +   L K TK ++ VL L + L+     PD  T+N +I+  CK  RV   + 
Sbjct: 393 PNVVSYNTVIAGLCKATKVHEGVLLLEQMLS-NNCVPDIVTFNTIIDAMCKTYRVDIAYE 451

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVFGCELDVFTYNTLINGL 205
           +   I  S  TP+ VT+ SL+  LC   R  +A  L  ++ R  GC  D+ TYNT+I+GL
Sbjct: 452 LFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGL 511

Query: 206 CRTGHTIVALNLFEEM-----ANGNGEFGVVC------------------------EPDA 236
           C++     A  LF +M     A  +  + +V                         +P A
Sbjct: 512 CKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGA 571

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           ITY T+IDG CK       L          L     Y  +V        F   ID L K 
Sbjct: 572 ITYGTLIDGFCKTGNLDKALEI-----LQLLLSKGSYPDVV-------TFSIFIDWLSKR 619

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            +L+ A EL +++ RAGL+P+ VTYN L++G C      +    E    LF+ +   G  
Sbjct: 620 GRLRQAGELLETMLRAGLVPDTVTYNTLLKGFC------DASRTEDAVDLFEVMRQCGCE 673

Query: 357 PDLYTYNILI 366
           PD  TY  L+
Sbjct: 674 PDNATYTTLV 683



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 130/287 (45%), Gaps = 59/287 (20%)

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           R      A    S+++ LC   +  +A   F ++    C  D  TYNT+INGL ++    
Sbjct: 3   RKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSKSDRLD 61

Query: 213 VALNLFEEMANGNG------EFGVV------------------------CEPDAITYSTI 242
            A+ L EEM + NG       +  V                        C PD ++Y+T+
Sbjct: 62  DAIRLLEEMVD-NGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTV 120

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISK 298
           I+GLCK     + +  +C      ++KM        +Q  C    + +  L+DG C++  
Sbjct: 121 INGLCK----LDQVDEAC----RVMDKM--------IQRGCQPNVITYGTLVDGFCRVGD 164

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF-P 357
           L  A EL + +   G  PN +TYN ++ GLC+  ++D      +   LFK +  +G   P
Sbjct: 165 LDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLD------SALQLFKEMEESGSCPP 218

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           D++TY+ +++   K G+V     +   ++    +P+ VT++SL+  L
Sbjct: 219 DVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGL 265



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 6/170 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++I+   L K +  D   ++ + +   G  P   TY  LI+ FCK G +     +
Sbjct: 534 PDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEI 593

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L     PD VTF+  I  L    R+ +A  L   +   G   D  TYNTL+ G C 
Sbjct: 594 LQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCD 653

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
              T  A++LFE M          CEPD  TY+T++  L  +    + L 
Sbjct: 654 ASRTEDAVDLFEVMRQCG------CEPDNATYTTLVGHLVDKKSYKDLLA 697



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 12/113 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +   +L+ + S P V +F+I    L+K         L + +   GL PD  TYN 
Sbjct: 588 DKALEILQLLLS-KGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNT 646

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTSLI---------KDLCAE 173
           L+  FC   R     V L  ++R C   PD  T+T+L+         KDL AE
Sbjct: 647 LLKGFCDASRTEDA-VDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAE 698


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/361 (30%), Positives = 169/361 (46%), Gaps = 42/361 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSL--FKRLNLTGLFPDRYTY 128
           ++A+ +F  M+  RP  P +  FN L   +AK K +D V+SL    ++   G  P   T 
Sbjct: 24  DDAIGLFGGMVKSRP-LPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTL 82

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           + L+N +C   R+S    ++ +++   + PD +TFT+LI  L   ++  EA AL  ++  
Sbjct: 83  SSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ 142

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            GC+ ++ TY  ++NGLC+ G   +A NL  +M           E D + ++TIID LCK
Sbjct: 143 RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK------IEADVVIFNTIIDSLCK 196

Query: 249 EAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLC------------------------ 283
                + L  F  M +      +  Y  L  + CLC                        
Sbjct: 197 YRHVDDALNLFKEMETKGIRPNVVTYSSL--ISCLCSYGRWSDASQLLSDMIEKKINPNL 254

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           + F  LID   K  K   A +L   + +  + P++ TYN LI G C   ++D+ K     
Sbjct: 255 VTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQ---- 310

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
             +F+ + S   FPDL TYN LI  FCK  RV  G  +F  +       D VT+T+LI+ 
Sbjct: 311 --MFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 368

Query: 404 L 404
           L
Sbjct: 369 L 369



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 149/316 (47%), Gaps = 32/316 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  FN +   L K +H D  L+LFK +   G+ P+  TY+ LI+C C  GR S    +L 
Sbjct: 184 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 243

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P+ VTF +LI     E + +EA  L   +     + D+FTYN+LING C   
Sbjct: 244 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHD 303

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMASFS 265
               A  +FE M + +      C PD  TY+T+I G CK    E G+  F   S      
Sbjct: 304 RLDKAKQMFEFMVSKD------CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 357

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                             + +  LI GL        A+++F+ +   G+ P+++TY+IL+
Sbjct: 358 D----------------TVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILL 401

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLCN+G++      E    +F  +  + +  D+Y Y  +I   CK G+V  G+ +F  +
Sbjct: 402 DGLCNNGKL------EKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 455

Query: 386 LPSCFTPDAVTFTSLI 401
                 P+ VT+ ++I
Sbjct: 456 SLKGVKPNVVTYNTMI 471



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 139/336 (41%), Gaps = 64/336 (19%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + D M+  R   P + ++N L          D    +F+ +     FPD  TYN L
Sbjct: 272 EAEKLHDDMIK-RSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 330

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  FCK  RV  G  +   +       D VT+T+LI+ L  +     A  +F ++   G 
Sbjct: 331 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 390

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ TY+ L++GLC  G    AL +F+ M           + D   Y+T+I+G+CK AG
Sbjct: 391 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE------IKLDIYIYTTMIEGMCK-AG 443

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +                                    DG           +LF SL  
Sbjct: 444 KVD------------------------------------DGW----------DLFCSLSL 457

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+ PNVVTYN +I GLC+   + E       + L K++   G  PD  TYN LI    +
Sbjct: 458 KGVKPNVVTYNTMISGLCSKRLLQEA------YALLKKMKEDGPLPDSGTYNTLIRAHLR 511

Query: 372 IG-RVSSGFVIFGRILPSC-FTPDAVTFTSLIKILE 405
            G + +S  +I  R + SC F  DA T   +  +L 
Sbjct: 512 DGDKAASAELI--REMRSCRFVGDASTIGLVANMLH 545


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/354 (31%), Positives = 164/354 (46%), Gaps = 39/354 (11%)

Query: 72  EALCVFDYMLN--MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           EA   FD ML+  + P+ P  T   +L     K  +    LS+F+ L+  G+ PD  T +
Sbjct: 472 EAAKYFDEMLDHGLMPNNPLYT---VLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCS 528

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
             I+   K GRV     V   +      PD  T++SLI   C +  + +A  L  ++ + 
Sbjct: 529 AFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK 588

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   ++F YN L++GLC++G    A  LF+ M     E G+  EPD++TYST+IDG CK 
Sbjct: 589 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMP----EKGL--EPDSVTYSTMIDGYCKS 642

Query: 250 AGSAN-FLGFSCMASFSALNKMAFYFPLVRVQC---------------------LCLNFL 287
              A  F  F  M S         Y  LV   C                       L+F 
Sbjct: 643 ENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN 702

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LIDG CK  K++ A +LFQ +    +MP+ VTY  +I   C  G+M+E        LLF
Sbjct: 703 TLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEAN------LLF 756

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K +    L  D  TY  L+  + K+G+ S  F +F +++     PD VT+  +I
Sbjct: 757 KEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 810



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 154/369 (41%), Gaps = 67/369 (18%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  ++ L    A     +    L   ++ +G+ PD + YN +I+C  K G++     
Sbjct: 381 KPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAST 440

Query: 147 VLGRILRSCFTPDAVTF-----------------------------------TSLIKDLC 171
            L  I      PDAVTF                                   T LI    
Sbjct: 441 YLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHF 500

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
               +MEA ++F  L   G   DV T +  I+GL + G    AL +F E+     E G+V
Sbjct: 501 KAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK----EKGLV 556

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
             PD  TYS++I G CK+             +F   ++M     L  +      +  L+D
Sbjct: 557 --PDVFTYSSLISGFCKQG--------EVEKAFELHDEMC----LKGIAPNIFIYNALVD 602

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GLCK   ++ AR+LF  +P  GL P+ VTY+ +I G C    + E       F LF  + 
Sbjct: 603 GLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAE------AFSLFHEMP 656

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KIL 404
           S G+ P  + YN L++  CK G +     +F  +L   F    ++F +LI       KI 
Sbjct: 657 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQ 715

Query: 405 EINSFFRQV 413
           E +  F+++
Sbjct: 716 EASQLFQEM 724



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 140/308 (45%), Gaps = 31/308 (10%)

Query: 113 FKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
            + +   GL P+ YTY I+    C+  R++   +    + ++   PD    ++LI     
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR 256

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           E  I E   +   +   G  +++ TYN LI+GLC+ G    A  + +      G   + C
Sbjct: 257 EGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILK------GMITLGC 310

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
           +P++ T+  +I+G C+E      L          + K       V       ++  +I+G
Sbjct: 311 KPNSRTFCLLIEGYCREHNMGRALEL-----LDEMEKRNLVPSAV-------SYGAMING 358

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LC    L +A +L + +  +GL PNVV Y+ LI G  ++G+++E +       L   ++ 
Sbjct: 359 LCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARR------LLDGMSC 412

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILE 405
           +G+ PD++ YN +I+C  K G++         I      PDAVTF + I       K+ E
Sbjct: 413 SGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTE 472

Query: 406 INSFFRQV 413
              +F ++
Sbjct: 473 AAKYFDEM 480



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 147/355 (41%), Gaps = 38/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA   F+ M      +P   + + L     +    D VL +   +   G+  +  TYN+
Sbjct: 226 NEAKLTFEEM-QKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNV 284

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G++     +L  ++     P++ TF  LI+  C E  +  A  L  ++    
Sbjct: 285 LIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRN 344

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE- 249
                 +Y  +INGLC      +A  L E+M           +P+ + YST+I G   E 
Sbjct: 345 LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG------LKPNVVVYSTLIMGYASEG 398

Query: 250 --------------AGSA------NFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNF 286
                         +G A      N +  SC++    + + + Y   ++ + L    + F
Sbjct: 399 RIEEARRLLDGMSCSGVAPDIFCYNAI-ISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 457

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
              I G  K  K+  A + F  +   GLMPN   Y +LI G    G + E         +
Sbjct: 458 GAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME------ALSI 511

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           F+ L++ G+ PD+ T +  I+   K GRV     +F  +      PD  T++SLI
Sbjct: 512 FRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 566



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 146/382 (38%), Gaps = 58/382 (15%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL VF   L  +   P V +++ L     K    +    L   + L G+ P+ + YN 
Sbjct: 541 QEALKVFSE-LKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNA 599

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G +     +   +      PD+VT++++I   C    + EA +LF ++   G
Sbjct: 600 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 659

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANG--------NGEFGVVCE--------- 233
            +   F YN L++G C+ G    A+NLF EM           N      C+         
Sbjct: 660 VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQ 719

Query: 234 -----------PDAITYSTIIDGLCKEAG--SANFL---------------GFSCMASFS 265
                      PD +TY+T+ID  CK      AN L                 S M  ++
Sbjct: 720 LFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYN 779

Query: 266 ALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            L + +  F L        V+   + +  +I   CK   L  A +L   +   G++    
Sbjct: 780 KLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT 839

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            +++LI  LC    + E         L   +   GL P L   + L+  F + G++    
Sbjct: 840 IHDLLITALCKREDLTEASK------LLDEMGELGLKPSLAACSTLVRSFHEAGKMDEAT 893

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  +      PD  T   L+
Sbjct: 894 RVFEGVKSLGLVPDTTTLIDLV 915



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 131/297 (44%), Gaps = 28/297 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M + +  +P    +N L     K    +  ++LF+ +   G F    ++N L
Sbjct: 647 EAFSLFHEMPS-KGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG-FATTLSFNTL 704

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ +CK  ++     +   ++     PD VT+T++I   C   ++ EA  LF +++    
Sbjct: 705 IDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 764

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +D  TY +L+ G  + G +     LFE+M A G        +PD +TY  +I   CKE 
Sbjct: 765 IVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKG-------VKPDEVTYGLVIYAHCKED 817

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                   + + +F   +++     L +     L    LI  LCK   L  A +L   + 
Sbjct: 818 --------NLVEAFKLRDEVVGKGMLTKGTIHDL----LITALCKREDLTEASKLLDEMG 865

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
             GL P++   + L+R     G+MDE         +F+ + S GL PD  T   L+N
Sbjct: 866 ELGLKPSLAACSTLVRSFHEAGKMDEATR------VFEGVKSLGLVPDTTTLIDLVN 916



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 140/341 (41%), Gaps = 66/341 (19%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG-- 144
           R P +S +IL          D+VL  F+  N  G  P    ++ILI+ + +MG +     
Sbjct: 132 RTPYSSSSIL----------DSVLFWFR--NYGGSSP--VVFDILIDSYKRMGMLDEAAN 177

Query: 145 --FV-----VLGRILR---------SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
             FV     +L  ++R             P+  T+T +   LC   R+ EA   F +++ 
Sbjct: 178 VFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQK 237

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC--EPDAITYSTIIDGL 246
            G + D    + LI+G  R G     L + + M        V C    + ITY+ +I GL
Sbjct: 238 TGLKPDYNACSALIDGFMREGDIDEVLRIKDVM--------VSCGIPINLITYNVLIHGL 289

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYF---PLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           CK         F  M   + + K        P  R  CL      LI+G C+   +  A 
Sbjct: 290 CK---------FGKMEKAAEILKGMITLGCKPNSRTFCL------LIEGYCREHNMGRAL 334

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           EL   + +  L+P+ V+Y  +I GLC+       K       L +++  +GL P++  Y+
Sbjct: 335 ELLDEMEKRNLVPSAVSYGAMINGLCH------CKDLSLANKLLEKMTFSGLKPNVVVYS 388

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            LI  +   GR+     +   +  S   PD   + ++I  L
Sbjct: 389 TLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 429



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 7/184 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  +F  M         VT  ++++G   K      V +LF+++   G+ PD  TY +
Sbjct: 750 EEANLLFKEMQERNLIVDTVTYTSLMYG-YNKLGQSSEVFALFEKMVAKGVKPDEVTYGL 808

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I   CK   +   F +   ++             LI  LC    + EA+ L  ++   G
Sbjct: 809 VIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELG 868

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +  +   +TL+      G    A  +FE    G    G+V  PD  T   +++G   + 
Sbjct: 869 LKPSLAACSTLVRSFHEAGKMDEATRVFE----GVKSLGLV--PDTTTLIDLVNGNLNDT 922

Query: 251 GSAN 254
            S +
Sbjct: 923 DSED 926


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 168/331 (50%), Gaps = 31/331 (9%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           FD ML+   + P V ++NIL   L    H    LS+ + +   G  P+  TYN L+  FC
Sbjct: 145 FDSMLSDGVA-PNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFC 203

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           + G V     ++  +      P+ VTF S++  +C   R+ +A  +F ++   G   D  
Sbjct: 204 RAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGV 263

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           +YNTL+ G C+ G +  AL++F EM       G++  PD +T++++I  +CK AG+    
Sbjct: 264 SYNTLVGGYCKVGCSHEALSVFAEMTRK----GIM--PDVVTFTSLIHVMCK-AGN---- 312

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAG 313
                     L +       +R + L +N   F  LIDG CK   L  A    + + +  
Sbjct: 313 ----------LERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCR 362

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           + P+VV YN LI G C  G+MDE +       L + + + G+ PD+ TY+ +++ +CK G
Sbjct: 363 IQPSVVCYNALINGYCMVGRMDEARE------LVREMEAKGVKPDVVTYSTILSAYCKNG 416

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              S F +  ++L +   PDA+T++SLI++L
Sbjct: 417 DTHSAFQLNQQMLENGVLPDAITYSSLIRVL 447



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 139/318 (43%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + +FN +   + K    +    +F  +   GL PD  +YN L+  +CK+G       
Sbjct: 224 KPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALS 283

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   + R    PD VTFTSLI  +C    +  A  L  ++R  G +++  T+  LI+G C
Sbjct: 284 VFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFC 343

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    AL    EM     +  VVC      Y+ +I+G C             +     
Sbjct: 344 KKGFLDDALLAVREMRQCRIQPSVVC------YNALINGYCM------------VGRMDE 385

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             ++        V+   + +  ++   CK      A +L Q +   G++P+ +TY+ LIR
Sbjct: 386 ARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIR 445

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC      E K      +LFK + S GL PD  TY  LI+  CK G V     +   ++
Sbjct: 446 VLC------EEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMV 499

Query: 387 PSCFTPDAVTFTSLIKIL 404
            +   PD VT++ LI  L
Sbjct: 500 KAGVLPDVVTYSVLINGL 517



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 152/338 (44%), Gaps = 28/338 (8%)

Query: 78  DYMLNMRPSR-----PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           D +L +R  R     P V  +N L          D    L + +   G+ PD  TY+ ++
Sbjct: 350 DALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTIL 409

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + +CK G     F +  ++L +   PDA+T++SLI+ LC E R+ +A  LF  +   G +
Sbjct: 410 SAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQ 469

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA-- 250
            D  TY +LI+G C+ G+   AL+L +EM       GV+  PD +TYS +I+GL K A  
Sbjct: 470 PDEVTYTSLIDGHCKEGNVERALSLHDEMVKA----GVL--PDVVTYSVLINGLSKSART 523

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN-----FLCLIDGLCKISKLKIAREL 305
             A  L F           +  Y  L+R    C N      L L+ G C    +  A ++
Sbjct: 524 KEAQRLLFKLYHEEPVPANIK-YDALMRC---CRNAELKSVLALLKGFCMKGLMNEADKV 579

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           +QS+       +   Y++LI G C +G + +   +       K++   G  P+  +   L
Sbjct: 580 YQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFH------KQMLQCGFAPNSTSTISL 633

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           I    + G V     +  ++L  C   DA    +LI +
Sbjct: 634 IRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDL 671



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 118/249 (47%), Gaps = 31/249 (12%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           + P  + + +++  L +++ +  A   F  +   G   +V+TYN L+  LC  GH   AL
Sbjct: 119 YAPSVLAYNAVLLAL-SDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEAL 177

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
           ++  +M       G  C+P+A+TY+T++   C+ AG               +++      
Sbjct: 178 SVLRDMR------GAGCDPNAVTYNTLVAAFCR-AGE--------------VDRAERLVD 216

Query: 276 LVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
           ++R   L  N   F  +++G+CK  +++ AR++F  + + GL P+ V+YN L+ G C  G
Sbjct: 217 MMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVG 276

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
              E         +F  +   G+ PD+ T+  LI+  CK G +     +   +       
Sbjct: 277 CSHEA------LSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQM 330

Query: 393 DAVTFTSLI 401
           + +TFT+LI
Sbjct: 331 NEITFTALI 339


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 160/317 (50%), Gaps = 33/317 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N+L G   K+   D  L + +R+++    PD  TYN ++   C  G++     V
Sbjct: 174 PDVITYNVLIGGYCKSGEIDKALEVLERMSVA---PDVVTYNTILRSLCDSGKLKEAMEV 230

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L R L R C+ PD +T+T LI+  C +S + +A  L  ++R  GC+ DV TYN LING+C
Sbjct: 231 LDRQLQRECY-PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC 289

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A+     M +    +G  C+P+ IT++ I+  +C              ++   
Sbjct: 290 KEGRLDEAIKFLNNMPS----YG--CKPNVITHNIILRSMC--------------STGRW 329

Query: 267 LNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           ++       ++R  C    + F  LI+ LC+   L  A ++ + +P+ G +PN ++YN L
Sbjct: 330 MDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPL 389

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + G C + +MD    Y  + +      S G +PD+ TYN L+   CK G+V +   I  +
Sbjct: 390 LHGFCQEKKMDRAIEYLEIMV------SRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQ 443

Query: 385 ILPSCFTPDAVTFTSLI 401
           +     +P  +T+ ++I
Sbjct: 444 LSSKGCSPVLITYNTVI 460



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 153/355 (43%), Gaps = 36/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ V D  L  R   P V ++ IL             + L   +   G  PD  TYN+
Sbjct: 225 KEAMEVLDRQLQ-RECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNV 283

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK GR+      L  +      P+ +T   +++ +C+  R M+A  L + +   G
Sbjct: 284 LINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKG 343

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   V T+N LIN LCR      A+++ E+M          C P++++Y+ ++ G C+E 
Sbjct: 344 CSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG------CVPNSLSYNPLLHGFCQEK 397

Query: 251 GSANFLGF-SCMASFSALNKMAFYFPLVRVQC----------------------LCLNFL 287
                + +   M S      +  Y  L+   C                      + + + 
Sbjct: 398 KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYN 457

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            +IDGL K+ K + A EL + + R GL P+++TY+ L+RGL  +G++DE         +F
Sbjct: 458 TVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEA------IKIF 511

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             +    + P   TYN ++   CK  + S        ++     P   T+T LI+
Sbjct: 512 HDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIE 566



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 125/283 (44%), Gaps = 31/283 (10%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           + +  NI +    + G +  G   L R++     PD +  TSLI+  C   +  +A  + 
Sbjct: 105 EEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIM 164

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
             L   G   DV TYN LI G C++G    AL + E M+           PD +TY+TI+
Sbjct: 165 EILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERMS---------VAPDVVTYNTIL 215

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKI 301
             LC               +   L++       ++ +C    + +  LI+  C  S +  
Sbjct: 216 RSLCDSG--------KLKEAMEVLDRQ------LQRECYPDVITYTILIEATCNDSGVGQ 261

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A +L   + + G  P+VVTYN+LI G+C +G++DE   +         + S G  P++ T
Sbjct: 262 AMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKF------LNNMPSYGCKPNVIT 315

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +NI++   C  GR      +   +L    +P  VTF  LI  L
Sbjct: 316 HNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFL 358



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 115/245 (46%), Gaps = 22/245 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FNIL   L + +     + + +++   G  P+  +YN L++ FC+  ++      
Sbjct: 346 PSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEY 405

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  ++ R C+ PD VT+ +L+  LC + ++  A  +  +L   GC   + TYNT+I+GL 
Sbjct: 406 LEIMVSRGCY-PDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLT 464

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFS 265
           + G T  A+ L EEM           +PD ITYST++ GL +E      +  F  M   S
Sbjct: 465 KVGKTEYAVELLEEMRRKG------LKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLS 518

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                      ++   +  N + L  GLCK  +   A +    +   G  P   TY ILI
Sbjct: 519 -----------IKPSAVTYNAIML--GLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILI 565

Query: 326 RGLCN 330
            G+ +
Sbjct: 566 EGIAD 570


>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 805

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 194/450 (43%), Gaps = 107/450 (23%)

Query: 18  SRKPTSSIS------------ENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDI 65
           +R+P++S S            +  P  P + A LRLTV++ +          +S   G +
Sbjct: 134 TRRPSASCSNFWLDLNRSHHHQQVPPSPLSNAVLRLTVQNCSHF--------RSIPNGFV 185

Query: 66  TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-HYDTVLSLFKRLNLTGLFPD 124
                + A+  F+ ML MR + P +  FN +   L KTK HY TVLSL  ++   G+ PD
Sbjct: 186 V----DNAVLSFNRMLQMRHT-PSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPD 240

Query: 125 RYTYNILINCFC-KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
            +T +ILINC+  KMG                + P+ +T T+LIK LC   ++ EA    
Sbjct: 241 LFTLSILINCYYFKMG----------------YEPNTITLTTLIKGLCLNGKVNEALLFH 284

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
             +   G  L+  TY  LINGLC+ G T  AL +  ++       G +   + + YST+I
Sbjct: 285 DHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIE------GKLVNTNVVMYSTVI 338

Query: 244 DGLCKEAGSANFLG-FSCM------------ASFSALNKMAF-------YFPLVRVQCLC 283
           DGLCK+    +  G +S M             +FS  ++M         Y   + V  LC
Sbjct: 339 DGLCKDKLVIDAYGLYSEMIVKRIPPTVVTFKAFSLFHEMVLKNINPNVYTFNILVDALC 398

Query: 284 --------------------------------LNFLCLIDGLCKISKLKIARELFQSLPR 311
                                           +++  LIDG CK  +L  A +L   +  
Sbjct: 399 KDGKIKEAKNVIIKMVDEALNLFTEMHCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMRD 458

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G  PNV+TYN L+  LC      +  H +    L       G+ PD++TYN L++  CK
Sbjct: 459 RGQPPNVITYNSLLHALC------KNHHVDKAIALVNNFKDQGIQPDMHTYNTLVDGLCK 512

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            GR+    +IF  +L   +     T+  +I
Sbjct: 513 QGRLKDAQLIFQDLLIKGYNLPTWTYNIMI 542



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 28/249 (11%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT--------PDAVT 162
           SLF  + L  + P+ YT+NIL++  CK G++     V+ +++             P+ V+
Sbjct: 373 SLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKPNTVS 432

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
           + +LI   C   R+  A  L  ++R  G   +V TYN+L++ LC+  H   A+ L     
Sbjct: 433 YNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAIAL----V 488

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
           N   + G+  +PD  TY+T++DGLCK+    +         F  L    +  P       
Sbjct: 489 NNFKDQGI--QPDMHTYNTLVDGLCKQGRLKD-----AQLIFQDLLIKGYNLP------- 534

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY-- 340
              +  +I+GLC    L  A  L   +   G +P+VVTY  +I  L    + D+ +    
Sbjct: 535 TWTYNIMINGLCLEGLLDEAETLLSKMEDNGCIPDVVTYQTIIHALFEKDENDKAEKLVR 594

Query: 341 ETVFLLFKR 349
           E +  +F++
Sbjct: 595 ELIVRVFRK 603



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 21/190 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKT-----------KHYDTVLSLFKRLNLTG 120
           +A  +F  M+ ++   P V +FNIL   L K            K  D  L+LF  ++   
Sbjct: 370 KAFSLFHEMV-LKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCK- 427

Query: 121 LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180
             P+  +YN LI+ FCK GR+SH + +L ++      P+ +T+ SL+  LC    + +A 
Sbjct: 428 --PNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALCKNHHVDKAI 485

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
           AL    +  G + D+ TYNTL++GLC+ G    A  +F+++                TY+
Sbjct: 486 ALVNNFKDQGIQPDMHTYNTLVDGLCKQGRLKDAQLIFQDLLIKGYNL------PTWTYN 539

Query: 241 TIIDGLCKEA 250
            +I+GLC E 
Sbjct: 540 IMINGLCLEG 549



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 80/176 (45%), Gaps = 10/176 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F  M      +P   S+N L     K+        L  ++   G  P+  TYN 
Sbjct: 415 DEALNLFTEM----HCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNS 470

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK   V     ++         PD  T+ +L+  LC + R+ +A  +F  L + G
Sbjct: 471 LLHALCKNHHVDKAIALVNNFKDQGIQPDMHTYNTLVDGLCKQGRLKDAQLIFQDLLIKG 530

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
             L  +TYN +INGLC  G    A  L  +M + NG     C PD +TY TII  L
Sbjct: 531 YNLPTWTYNIMINGLCLEGLLDEAETLLSKMED-NG-----CIPDVVTYQTIIHAL 580



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  + D M + R   P V ++N L   L K  H D  ++L       G+ PD +TYN 
Sbjct: 447 SHAWKLLDQMRD-RGQPPNVITYNSLLHALCKNHHVDKAIALVNNFKDQGIQPDMHTYNT 505

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK GR+    ++   +L   +     T+  +I  LC E  + EA  L +K+   G
Sbjct: 506 LVDGLCKQGRLKDAQLIFQDLLIKGYNLPTWTYNIMINGLCLEGLLDEAETLLSKMEDNG 565

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           C  DV TY T+I+ L        A  L  E+
Sbjct: 566 CIPDVVTYQTIIHALFEKDENDKAEKLVREL 596



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 2/105 (1%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++N L   L K         +F+ L + G     +TYNI+IN  C  G +     
Sbjct: 497 QPDMHTYNTLVDGLCKQGRLKDAQLIFQDLLIKGYNLPTWTYNIMINGLCLEGLLDEAET 556

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL--RVF 189
           +L ++  +   PD VT+ ++I  L  +    +A  L  +L  RVF
Sbjct: 557 LLSKMEDNGCIPDVVTYQTIIHALFEKDENDKAEKLVRELIVRVF 601


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 165/346 (47%), Gaps = 40/346 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  FDYM+  RP    V   N + G   +    D  +SL++++ +  +  + Y++NI
Sbjct: 88  DDAIDFFDYMVRSRPFYTAVDC-NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI-------------- 176
           LI CFC   ++S      G++ +  F PD VTF +L+  LC E RI              
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206

Query: 177 -MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
            +EA ALF ++   G    V T+NTLINGLC  G  + A  L  +M       G     D
Sbjct: 207 FLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMV------GKGLHID 260

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
            +TY TI++G+CK   + + L          L+KM        ++   + +  +ID LCK
Sbjct: 261 VVTYGTIVNGMCKMGDTKSALNL--------LSKM----EETHIKPDVVIYSAIIDRLCK 308

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
                 A+ LF  +   G+ PNV TYN +I G C+ G+  + +       L + +    +
Sbjct: 309 DGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR------LLRDMIEREI 362

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            PD+ T+N LI+   K G++     +   +L  C  PD VT+ S+I
Sbjct: 363 NPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMI 408



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 144/327 (44%), Gaps = 40/327 (12%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR--- 140
           R   P V +FN L     K         L   +    +FPD  TYN +I  FCK  R   
Sbjct: 360 REINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDD 419

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
             H F ++        +PD VTF ++I   C   R+ E   L  ++   G   +  TYNT
Sbjct: 420 AKHMFDLMA-------SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+G C   +   A +LF+EM +       VC PD IT + ++ G C+            
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHG-----VC-PDTITCNILLYGFCEN----------- 515

Query: 261 MASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
                 L +    F ++++  + L+   +  +I G+CK SK+  A +LF SLP  G+ P+
Sbjct: 516 ----EKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD 571

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           V TYN++I G C    + +        +LF ++   G  PD  TYN LI    K G +  
Sbjct: 572 VQTYNVMISGFCGKSAISDAN------VLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 625

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKIL 404
              +   +  + F+ DA T     +I+
Sbjct: 626 SIELISEMRSNGFSGDAFTIKMAEEII 652



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 125/317 (39%), Gaps = 67/317 (21%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD M     + P V +FN +     + K  D  + L + ++  GL  +  TYN 
Sbjct: 418 DDAKHMFDLM-----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ FC++  ++    +   ++     PD +T   L+   C   ++ EA  LF  +++  
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 532

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +LD   YN +I+G+C+      A +LF  +       GV  EPD  TY+ +I G C ++
Sbjct: 533 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPI----HGV--EPDVQTYNVMISGFCGKS 586

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             ++                                               A  LF  + 
Sbjct: 587 AISD-----------------------------------------------ANVLFHKMK 599

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P+  TYN LIRG    G++D++        L   + S G   D +T  +     C
Sbjct: 600 DNGHEPDNSTYNTLIRGCLKAGEIDKS------IELISEMRSNGFSGDAFTIKMAEEIIC 653

Query: 371 KIGRVSSGFVIFGRILP 387
              RVS   +I   + P
Sbjct: 654 ---RVSDEEIIENYLRP 667



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 1/153 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +F+ ++ M        ++NI+   + K    D    LF  L + G+ PD  TYN++
Sbjct: 520 EALELFE-VIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVM 578

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ FC    +S   V+  ++  +   PD  T+ +LI+       I ++  L +++R  G 
Sbjct: 579 ISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGF 638

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
             D FT       +CR     +  N      NG
Sbjct: 639 SGDAFTIKMAEEIICRVSDEEIIENYLRPKING 671



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 6/109 (5%)

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           ++++  +A  L++ +    +  N+ ++NILI+  C+  ++  +         F +L   G
Sbjct: 118 RMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFS------LSTFGKLTKLG 171

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
             PD+ T+N L++  C   R+S    +FG ++ + F      F  +++I
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEI 220


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 162/356 (45%), Gaps = 36/356 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL VFD ML+ R   P V +++IL     K   Y   + L   +   G  PD  TYN+L
Sbjct: 180 DALAVFDDMLH-RGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVL 238

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  C  G V     +L  +      PDAVT+T ++K LC   R  E   LF ++    C
Sbjct: 239 INAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKC 298

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D  T+NT++  LC+ G    A+ + + M+    E G  C PD +TYS+I+DGLC    
Sbjct: 299 APDEVTFNTIVTSLCQQGLVDRAIKVVDHMS----EHG--CIPDIVTYSSILDGLCDVGR 352

Query: 252 SANFLG-FSCMASFSALNKMAFYFPLVRVQC---------------LC-------LNFLC 288
             + +   S + S+        Y  +++  C               +C       + F  
Sbjct: 353 VDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNT 412

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +I  LC+   +  A ++ + +   G  P++VTYN +I GLCN+  +D+         L  
Sbjct: 413 VIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAME------LLS 466

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L S G  PD+ T+N L+   C + R      +   ++ S   PDA TF ++I  L
Sbjct: 467 NLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSL 522



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 132/282 (46%), Gaps = 24/282 (8%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD +T+N LI   C  GRV     V   +L    +P  VT++ L+   C  S   +A  L
Sbjct: 160 PDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVL 219

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             ++R  GCE D+ TYN LIN +C  G    ALN+  ++ +        C+PDA+TY+ +
Sbjct: 220 LDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHG------CKPDAVTYTPV 273

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           +  LC   GS  +     + +  A NK A            + F  ++  LC+   +  A
Sbjct: 274 LKSLC---GSERWKEVEELFAEMASNKCAPDE---------VTFNTIVTSLCQQGLVDRA 321

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            ++   +   G +P++VTY+ ++ GLC+ G++D+         L  RL S G  PD   Y
Sbjct: 322 IKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVE------LLSRLKSYGCKPDTIAY 375

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             ++   C I +      +   ++ S   PD VTF ++I  L
Sbjct: 376 TTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASL 417



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 137/318 (43%), Gaps = 34/318 (10%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           PV   NIL   L           +F  L  +       TYN ++N +C+ GR+     ++
Sbjct: 97  PVVPCNILIKRLCSGGRVADAERVFATLGASATV---VTYNTMVNGYCRAGRIEDARRLI 153

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
             +    F PD  TF  LI+ LC   R+ +A A+F  +   GC   V TY+ L++  C+ 
Sbjct: 154 SGMP---FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKA 210

Query: 209 GHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSA 266
                A+ L +EM A G       CEPD +TY+ +I+ +C E      L   S + S   
Sbjct: 211 SGYRQAMVLLDEMRAKG-------CEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGC 263

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                 Y P+++              LC   + K   ELF  +      P+ VT+N ++ 
Sbjct: 264 KPDAVTYTPVLK-------------SLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVT 310

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC  G +D          +   ++  G  PD+ TY+ +++  C +GRV     +  R+ 
Sbjct: 311 SLCQQGLVDR------AIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLK 364

Query: 387 PSCFTPDAVTFTSLIKIL 404
                PD + +T+++K L
Sbjct: 365 SYGCKPDTIAYTTVLKGL 382



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 144/318 (45%), Gaps = 25/318 (7%)

Query: 88  PPVT-SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           PP T +FN L   L         L++F  +   G  P   TY+IL++  CK        V
Sbjct: 159 PPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMV 218

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +      PD VT+  LI  +C E  + EA  + + L   GC+ D  TY  ++  LC
Sbjct: 219 LLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLC 278

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            +        LF EMA+        C PD +T++TI+  LC++       G    A    
Sbjct: 279 GSERWKEVEELFAEMASNK------CAPDEVTFNTIVTSLCQQ-------GLVDRA-IKV 324

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           ++ M+ +  +  +    + +  ++DGLC + ++  A EL   L   G  P+ + Y  +++
Sbjct: 325 VDHMSEHGCIPDI----VTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLK 380

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC+   +++ +H E    L   +  +   PD  T+N +I   C+ G V     +  ++ 
Sbjct: 381 GLCS---IEQWEHAEE---LMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMS 434

Query: 387 PSCFTPDAVTFTSLIKIL 404
            +   PD VT+ S+I  L
Sbjct: 435 ENGCNPDIVTYNSIIDGL 452



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 142/339 (41%), Gaps = 33/339 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   ++  +   L   + ++    L   +  +   PD  T+N +I   C+ G V     
Sbjct: 369 KPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIK 428

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V+ ++  +   PD VT+ S+I  LC E  I +A  L + L+ +GC+ D+ T+NTL+ GLC
Sbjct: 429 VVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLC 488

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---------------- 250
                  A  L   M + +      C PDA T++T+I  LC++                 
Sbjct: 489 SVDRWEDAEQLMVNMMHSD------CPPDATTFNTVITSLCQKGLLLQAIETLKIMAENG 542

Query: 251 -----GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
                 + N +  + + +      +     +       + +  +I  + K  K++ A +L
Sbjct: 543 CIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGTPDLITYNTVISNITKAGKMEEALDL 602

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
            + +   GL P+ +TY  L  G+C +   D          +  RL   GL PD   YN +
Sbjct: 603 LRVMVSNGLSPDTITYRSLAYGICREDGTDR------AIRMLCRLQDMGLSPDATFYNDI 656

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +  FC+  R       F  ++ S   PD  T+  L++ L
Sbjct: 657 LLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEAL 695



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 109/253 (43%), Gaps = 20/253 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + +FN L   L     ++    L   +  +   PD  T+N +I   C+ G +     
Sbjct: 474 KPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIE 533

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L  +  +   P+  T+  ++  L    +  EA  L + +       D+ TYNT+I+ + 
Sbjct: 534 TLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGM--TNGTPDLITYNTVISNIT 591

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    AL+L   M + NG       PD ITY ++  G+C+E G+   +   C      
Sbjct: 592 KAGKMEEALDLLRVMVS-NG-----LSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMG 645

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L+  A ++          N + L  G C+  +  IA + F  +  +G MP+  TY IL+ 
Sbjct: 646 LSPDATFY----------NDILL--GFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLE 693

Query: 327 GLCNDGQMDETKH 339
            L  +  +DE K 
Sbjct: 694 ALAYECLLDEAKQ 706



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 14/126 (11%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LI  LC   ++  A  +F +L   G    VVTYN ++ G C  G++++ +          
Sbjct: 104 LIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDAR---------- 150

Query: 349 RLNSTGLFP-DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           RL S   FP D +T+N LI   C  GRV     +F  +L    +P  VT++ L+      
Sbjct: 151 RLISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKA 210

Query: 408 SFFRQV 413
           S +RQ 
Sbjct: 211 SGYRQA 216



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 3/135 (2%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL +   M N     P + ++N +   + K    +  L L + +   GL PD  TY  
Sbjct: 564 QEALKLLSGMTN---GTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRS 620

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L    C+         +L R+     +PDA  +  ++   C   R   A   F  +   G
Sbjct: 621 LAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSG 680

Query: 191 CELDVFTYNTLINGL 205
           C  D  TY  L+  L
Sbjct: 681 CMPDESTYIILLEAL 695



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 1/120 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL +   M++   S   +T  ++ +G + +    D  + +  RL   GL PD   YN 
Sbjct: 597 EEALDLLRVMVSNGLSPDTITYRSLAYG-ICREDGTDRAIRMLCRLQDMGLSPDATFYND 655

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++  FC+  R          ++ S   PD  T+  L++ L  E  + EA  L   L   G
Sbjct: 656 ILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLG 715


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 150/314 (47%), Gaps = 26/314 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   L          +L++R+   G  PD  TYN L++ FCK+G +     +
Sbjct: 8   PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKI 67

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
               ++  F PD VT+ +LI   C   ++ EA  +  ++       DV TYN+L+NGLC+
Sbjct: 68  FDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCK 127

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  L  +             P+ ITYST+I GLC+E    +      +  F ++
Sbjct: 128 NGRVDEARMLIVDKG---------FSPNVITYSTLISGLCRELRGVS----EALKLFGSV 174

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K   Y P V        +  LIDGL K  ++  A ELF  L + GL P+ +TY + I G
Sbjct: 175 LKQG-YEPEVP------TYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDG 227

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G++      E   L+ K ++  G  PD+ ++N +IN  CK  RV    V+   +  
Sbjct: 228 LCKAGRV------EDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEA 281

Query: 388 SCFTPDAVTFTSLI 401
              +P+A++F +LI
Sbjct: 282 KGCSPNAISFNTLI 295



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 169/390 (43%), Gaps = 72/390 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +FD  +  R   P V ++N L     K    D    + +R+    L PD  TYN 
Sbjct: 62  DEALKIFDGAVK-RGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 131 LINCFCKMGRV---------------------------------SHGFVVLGRILRSCFT 157
           L+N  CK GRV                                 S    + G +L+  + 
Sbjct: 121 LVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYE 180

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P+  T+  LI  L  E R+ EA  LF+ L   G E D  TY   I+GLC+ G    AL +
Sbjct: 181 PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLM 240

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG----------------SANFLGFS-- 259
            ++M          C PD ++++ +I+GLCKE                  S N + F+  
Sbjct: 241 LKDMDEKG------CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTL 294

Query: 260 ----CMASFSALNKMAFYFPLVR-VQCLCLNFLCLIDGLCKI---SKLKIARELFQSLPR 311
               C A         F   L R V+   + +  L+DGLCK     ++K A  LF ++  
Sbjct: 295 ICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIE 354

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +P+VVTY+ LI GL   G++D+ +       L   + + G  P++YTYN LI+  C 
Sbjct: 355 KGRVPDVVTYSALIDGLGKAGKLDDARR------LLGAMEAKGCIPNVYTYNSLISGLCG 408

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + +V     +F  ++     PD +T+ ++I
Sbjct: 409 LEKVDEALELFVAMVEKGCVPDTITYGTII 438



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 141/297 (47%), Gaps = 22/297 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F  +L  +   P V ++NIL   L K    +    LF  L   GL PD  TY +
Sbjct: 165 SEALKLFGSVLK-QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTV 223

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I+  CK GRV    ++L  +      PD V+  ++I  LC E R+ EA  L + +   G
Sbjct: 224 FIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG 283

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +  ++NTLI G CR G    A+  F+EM     + GV  +P  +TY+ ++DGLCK  
Sbjct: 284 CSPNAISFNTLICGQCRAGKWKKAMTTFKEML----KRGV--KPTVVTYNILVDGLCKAR 337

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                     +  F A+ +      +V        +  LIDGL K  KL  AR L  ++ 
Sbjct: 338 QEGRIK--EAITLFDAMIEKGRVPDVV-------TYSALIDGLGKAGKLDDARRLLGAME 388

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
             G +PNV TYN LI GLC   ++DE         LF  +   G  PD  TY  +I+
Sbjct: 389 AKGCIPNVYTYNSLISGLCGLEKVDEA------LELFVAMVEKGCVPDTITYGTIIS 439


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 162/331 (48%), Gaps = 27/331 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ + D M++ +  +P + ++N +   L ++  +D    +FK ++  G+ PD  ++ ILI
Sbjct: 210 AMALVDSMVS-KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILI 268

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
             FC++G +     +   +      PD V+F+ LI       ++  A A   ++R FG  
Sbjct: 269 GGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV 328

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D   Y  +I G CR G    AL + +EM       G  C PD +TY+T+++GLCKE   
Sbjct: 329 PDGVIYTMVIGGFCRAGLMSDALRVRDEMV------GCGCLPDVVTYNTLLNGLCKERRL 382

Query: 253 ANFLGFSCMASFSALNKMAFY-FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            +  G         LN+M     P      LC  F  LI G C   KL  A +LF ++  
Sbjct: 383 LDAEGL--------LNEMRERGVP----PDLC-TFTTLIHGYCIEGKLDKALQLFDTMLN 429

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
             L P++VTYN LI G+C  G +D+         L+  ++S  +FP+  TY+ILI+  C+
Sbjct: 430 QRLRPDIVTYNTLIDGMCRQGDLDKAND------LWDDMHSREIFPNHVTYSILIDSHCE 483

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            G+V   F     ++     P+ +T+ S+IK
Sbjct: 484 KGQVEDAFGFLDEMINKGILPNIMTYNSIIK 514



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 165/346 (47%), Gaps = 29/346 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL ++  M + R  +P + SF+ L G  A+    D  ++  + +   GL PD   Y +
Sbjct: 278 EEALKIYKEMRH-RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 336

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I  FC+ G +S    V   ++     PD VT+ +L+  LC E R+++A  L  ++R  G
Sbjct: 337 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 396

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ T+ TLI+G C  G    AL LF+ M N          PD +TY+T+IDG+C++ 
Sbjct: 397 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR------LRPDIVTYNTLIDGMCRQG 450

Query: 251 --GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
               AN L +  M S          FP        + +  LID  C+  +++ A      
Sbjct: 451 DLDKANDL-WDDMHSRE-------IFP------NHVTYSILIDSHCEKGQVEDAFGFLDE 496

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G++PN++TYN +I+G C  G + + + +       +++    + PDL TYN LI+ 
Sbjct: 497 MINKGILPNIMTYNSIIKGYCRSGNVSKGQKF------LQKMMVNKVSPDLITYNTLIHG 550

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
           + K  ++   F +   +      PD VT+  LI    ++   ++  
Sbjct: 551 YIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAG 596



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 155/317 (48%), Gaps = 30/317 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V SF IL G   +    +  L ++K +   G+ PD  +++ LI  F + G++ H    
Sbjct: 259 PDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAY 318

Query: 148 LGRILRSCF--TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           L R +R CF   PD V +T +I   C    + +A  +  ++   GC  DV TYNTL+NGL
Sbjct: 319 L-REMR-CFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 376

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASF 264
           C+    + A  L  EM     E GV   PD  T++T+I G C E      L  F  M   
Sbjct: 377 CKERRLLDAEGLLNEMR----ERGV--PPDLCTFTTLIHGYCIEGKLDKALQLFDTM--- 427

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             LN+        R++   + +  LIDG+C+   L  A +L+  +    + PN VTY+IL
Sbjct: 428 --LNQ--------RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSIL 477

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I   C  GQ+      E  F     + + G+ P++ TYN +I  +C+ G VS G     +
Sbjct: 478 IDSHCEKGQV------EDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQK 531

Query: 385 ILPSCFTPDAVTFTSLI 401
           ++ +  +PD +T+ +LI
Sbjct: 532 MMVNKVSPDLITYNTLI 548



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 44/211 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +FD MLN R  RP + ++N L   + +    D    L+  ++   +FP+  TY+I
Sbjct: 418 DKALQLFDTMLNQR-LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI 476

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC------------------- 171
           LI+  C+ G+V   F  L  ++     P+ +T+ S+IK  C                   
Sbjct: 477 LIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 536

Query: 172 ----------------AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
                            E ++ +A  L   +     + DV TYN LING    G+   A 
Sbjct: 537 VSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAG 596

Query: 216 NLFEEM-ANGNGEFGVVCEPDAITYSTIIDG 245
            +FE+M A G        EPD  TY ++I+G
Sbjct: 597 WIFEKMCAKG-------IEPDRYTYMSMING 620



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A    D M+N +   P + ++N +     ++ +        +++ +  + PD  TYN 
Sbjct: 488 EDAFGFLDEMIN-KGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNT 546

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ + K  ++   F +L  + +    PD VT+  LI        + EA  +F K+   G
Sbjct: 547 LIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKG 606

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            E D +TY ++ING    G++  A  L +EM
Sbjct: 607 IEPDRYTYMSMINGHVTAGNSKEAFQLHDEM 637



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 24/257 (9%)

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  +L S  TP    F  LI+      +  EA   F  +      +     N L+  L 
Sbjct: 73  IVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALS 132

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G   +A + +  + + N E       +  T + ++   CK       L F  + +  +
Sbjct: 133 RAGWPHLAADAYRLVFSSNSEV------NTYTLNIMVHNYCKA------LEFDKVDAVIS 180

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +    FP V      +    ++D   +    + A  L  S+   GL P +VTYN +++
Sbjct: 181 EMEKRCVFPDV------VTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLK 234

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G  D+       + +FK ++  G+ PD+ ++ ILI  FC++G +     I+  + 
Sbjct: 235 GLCRSGMWDKA------WEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMR 288

Query: 387 PSCFTPDAVTFTSLIKI 403
                PD V+F+ LI +
Sbjct: 289 HRGIKPDLVSFSCLIGL 305



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 37/80 (46%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+     +P V ++N+L    +   +      +F+++   G+ PDRYTY  +IN     G
Sbjct: 566 MMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG 625

Query: 140 RVSHGFVVLGRILRSCFTPD 159
                F +   +L+  F PD
Sbjct: 626 NSKEAFQLHDEMLQRGFAPD 645


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 166/346 (47%), Gaps = 40/346 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  FDYM+  RP    V   N + G   +    D  +SL++++ +  +  + Y++NI
Sbjct: 88  DDAIDFFDYMVRSRPFYTAVDC-NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI-------------- 176
           LI CFC   ++S      G++ +  F PD VTF +L+  LC E RI              
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206

Query: 177 -MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
            +EA ALF ++   G    V T+NTLINGLC  G  + A  L  +M  G G        D
Sbjct: 207 FLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMV-GKG-----LHID 260

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
            +TY TI++G+CK   +            SALN ++       ++   + +  +ID LCK
Sbjct: 261 VVTYGTIVNGMCKMGDTK-----------SALNLLS-KMEETHIKPDVVIYSAIIDRLCK 308

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
                 A+ LF  +   G+ PNV TYN +I G C+ G+  + +       L + +    +
Sbjct: 309 DGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR------LLRDMIEREI 362

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            PD+ T+N LI+   K G++     +   +L  C  PD VT+ S+I
Sbjct: 363 NPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMI 408



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 151/354 (42%), Gaps = 69/354 (19%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  ++ +   L K  H+     LF  +   G+ P+ +TYN +I+ FC  GR S    
Sbjct: 293 KPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR 352

Query: 147 VL-----------------------------------GRILRSCFTPDAVTFTSLIKDLC 171
           +L                                     +L  C  PD VT+ S+I   C
Sbjct: 353 LLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFC 412

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
             +R  +A  +F  +       DV T+NT+I+  CR       + L  E++      G+V
Sbjct: 413 KHNRFDDAKHMFDLM----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRR----GLV 464

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC--- 288
              +  TY+T+I G C+                  LN     F  +    +C + +    
Sbjct: 465 --ANTTTYNTLIHGFCE---------------VDNLNAAQDLFQEMISHGVCPDTITCNI 507

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+ G C+  KL+ A ELF+ +  + +  + V YNI+I G+C   ++DE       + LF 
Sbjct: 508 LLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEA------WDLFC 561

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            L   G+ PD+ TYN++I+ FC    +S   V+F ++  +   PD  T+ +LI+
Sbjct: 562 SLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIR 615



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 123/309 (39%), Gaps = 65/309 (21%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD M     + P V +FN +     + K  D  + L + ++  GL  +  TYN 
Sbjct: 418 DDAKHMFDLM-----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ FC++  ++    +   ++     PD +T   L+   C   ++ EA  LF  +++  
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 532

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +LD   YN +I+G+C+      A +LF  +       GV  EPD  TY+ +I G C ++
Sbjct: 533 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPI----HGV--EPDVQTYNVMISGFCGKS 586

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             ++                                               A  LF  + 
Sbjct: 587 AISD-----------------------------------------------ANVLFHKMK 599

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P+  TYN LIRG    G++D++        L   + S G   D +T  ++ +   
Sbjct: 600 DNGHEPDNSTYNTLIRGCLKAGEIDKS------IELISEMRSNGFSGDAFTIKMVADLIT 653

Query: 371 KIGRVSSGF 379
             GR+   F
Sbjct: 654 D-GRLDKSF 661



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 6/109 (5%)

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           ++++  +A  L++ +    +  N+ ++NILI+  C+  ++  +         F +L   G
Sbjct: 118 RMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFS------LSTFGKLTKLG 171

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
             PD+ T+N L++  C   R+S    +FG ++ + F      F  +++I
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEI 220


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 157/340 (46%), Gaps = 36/340 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++ L     K + +     L   +   G+ P    YN +I   C  GRV    V 
Sbjct: 31  PDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVH 90

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + R C  P  +T+T L+  LC  +RI +A+ +   +   GC  +V TYNTLING C+
Sbjct: 91  YRDMQRHC-APSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCK 149

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN-------FLGFSC 260
            G+   A+ LF +M   +      C PD  TY+ +IDG CK+    +        + + C
Sbjct: 150 LGNMDEAVVLFNQMLENS------CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGC 203

Query: 261 MASFSALNKM------------AFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARE 304
             +F   N +            AF    + ++  C      F  +ID  CK+ +L +A E
Sbjct: 204 EPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYE 263

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           LFQ +   G +P++ TYNI+I G C   ++D+ +       L +R+   G  PD+ TYN 
Sbjct: 264 LFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQ------LLERMTEAGCPPDVVTYNS 317

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +++  CK  +V   + ++  +    +  D VT ++LI  L
Sbjct: 318 IVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGL 357



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 151/319 (47%), Gaps = 26/319 (8%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V ++ IL   L K+        + + +   G  P+  TYN LIN FCK+G +  
Sbjct: 96  RHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDE 155

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
             V+  ++L +  +PD  T+  LI   C + R  + A L  ++  +GCE +  TYNTL++
Sbjct: 156 AVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD 215

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMA 262
            L ++G  I A NL + M   +      C+P   T++ +ID  CK       +  F  M 
Sbjct: 216 SLVKSGKYIDAFNLAQMMLRRD------CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 269

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
               L  +  Y               +I G C+ +++  AR+L + +  AG  P+VVTYN
Sbjct: 270 DRGCLPDIYTYN-------------IMISGACRANRIDDARQLLERMTEAGCPPDVVTYN 316

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            ++ GLC   Q+DE   YE    +++ L + G F D+ T + LI+  CK  R+     + 
Sbjct: 317 SIVSGLCKASQVDEA--YE----VYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLL 370

Query: 383 GRILPSCFTPDAVTFTSLI 401
             +  +   PD V +T LI
Sbjct: 371 REMERNGSAPDVVAYTILI 389



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 142/316 (44%), Gaps = 25/316 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F+ ML    S P V ++NIL     K +       L + +   G  P+  TYN 
Sbjct: 154 DEAVVLFNQMLENSCS-PDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNT 212

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++   K G+    F +   +LR    P   TF  +I   C   ++  A  LF  +   G
Sbjct: 213 LMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRG 272

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  D++TYN +I+G CR      A  L E M          C PD +TY++I+ GLCK +
Sbjct: 273 CLPDIYTYNIMISGACRANRIDDARQLLERMTEAG------CPPDVVTYNSIVSGLCKAS 326

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                        +  L    ++  +V    L       IDGLCK  +L  A +L + + 
Sbjct: 327 QVD-----EAYEVYEVLRNGGYFLDVVTCSTL-------IDGLCKSRRLDDAEKLLREME 374

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R G  P+VV Y ILI G C   Q+D++         F  +   G  P + TY+I+I+  C
Sbjct: 375 RNGSAPDVVAYTILIHGFCKADQLDKS------LAFFSEMLDKGCVPTVITYSIVIDKLC 428

Query: 371 KIGRVSSGFVIFGRIL 386
           K  RV  G ++   +L
Sbjct: 429 KSARVRDGCMLLKTML 444



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 24/238 (10%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  R  +P   +FN++     K    D    LF+ +   G  PD YTYNI+I+  C+  
Sbjct: 232 MMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRAN 291

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           R+     +L R+  +   PD VT+ S++  LC  S++ EA  ++  LR  G  LDV T +
Sbjct: 292 RIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCS 351

Query: 200 TLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           TLI+GLC++     A  L  EM  NG+        PD + Y+ +I G CK    A+ L  
Sbjct: 352 TLIDGLCKSRRLDDAEKLLREMERNGSA-------PDVVAYTILIHGFCK----ADQLDK 400

Query: 259 SCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
           S          +AF+  ++   C+   + +  +ID LCK ++++    L +++   G+
Sbjct: 401 S----------LAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 25/232 (10%)

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           + +  EA  LF       C  D  TY+TLING C+      A  L +EM     + G+V 
Sbjct: 11  KKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEME----KRGIV- 65

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
            P    Y+TII GLC + G  +    S +  +  + +     P V      + +  L+D 
Sbjct: 66  -PHNAVYNTIIKGLC-DNGRVD----SALVHYRDMQRHCA--PSV------ITYTILVDA 111

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LCK +++  A  + + +  AG  PNVVTYN LI G C  G MDE        +LF ++  
Sbjct: 112 LCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEA------VVLFNQMLE 165

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               PD++TYNILI+ +CK  R   G  +   ++     P+ +T+ +L+  L
Sbjct: 166 NSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSL 217


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 162/331 (48%), Gaps = 27/331 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ + D M++ +  +P + ++N +   L ++  +D    +FK ++  G+ PD  ++ ILI
Sbjct: 149 AMALVDSMVS-KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILI 207

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
             FC++G +     +   +      PD V+F+ LI       ++  A A   ++R FG  
Sbjct: 208 GGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV 267

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D   Y  +I G CR G    AL + +EM       G  C PD +TY+T+++GLCKE   
Sbjct: 268 PDGVIYTMVIGGFCRAGLMSDALRVRDEMV------GCGCLPDVVTYNTLLNGLCKERRL 321

Query: 253 ANFLGFSCMASFSALNKMAFY-FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            +  G         LN+M     P      LC  F  LI G C   KL  A +LF ++  
Sbjct: 322 LDAEGL--------LNEMRERGVP----PDLC-TFTTLIHGYCIEGKLDKALQLFDTMLN 368

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
             L P++VTYN LI G+C  G +D+         L+  ++S  +FP+  TY+ILI+  C+
Sbjct: 369 QRLRPDIVTYNTLIDGMCRQGDLDKAND------LWDDMHSREIFPNHVTYSILIDSHCE 422

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            G+V   F     ++     P+ +T+ S+IK
Sbjct: 423 KGQVEDAFGFLDEMINKGILPNIMTYNSIIK 453



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 165/346 (47%), Gaps = 29/346 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL ++  M + R  +P + SF+ L G  A+    D  ++  + +   GL PD   Y +
Sbjct: 217 EEALKIYKEMRH-RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 275

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I  FC+ G +S    V   ++     PD VT+ +L+  LC E R+++A  L  ++R  G
Sbjct: 276 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 335

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ T+ TLI+G C  G    AL LF+ M N          PD +TY+T+IDG+C++ 
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR------LRPDIVTYNTLIDGMCRQG 389

Query: 251 --GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
               AN L +  M S          FP        + +  LID  C+  +++ A      
Sbjct: 390 DLDKANDL-WDDMHSRE-------IFP------NHVTYSILIDSHCEKGQVEDAFGFLDE 435

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G++PN++TYN +I+G C  G + + + +       +++    + PDL TYN LI+ 
Sbjct: 436 MINKGILPNIMTYNSIIKGYCRSGNVSKGQKF------LQKMMVNKVSPDLITYNTLIHG 489

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
           + K  ++   F +   +      PD VT+  LI    ++   ++  
Sbjct: 490 YIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAG 535



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 155/317 (48%), Gaps = 30/317 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V SF IL G   +    +  L ++K +   G+ PD  +++ LI  F + G++ H    
Sbjct: 198 PDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAY 257

Query: 148 LGRILRSCF--TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           L R +R CF   PD V +T +I   C    + +A  +  ++   GC  DV TYNTL+NGL
Sbjct: 258 L-REMR-CFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 315

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASF 264
           C+    + A  L  EM     E GV   PD  T++T+I G C E      L  F  M   
Sbjct: 316 CKERRLLDAEGLLNEMR----ERGV--PPDLCTFTTLIHGYCIEGKLDKALQLFDTM--- 366

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             LN+        R++   + +  LIDG+C+   L  A +L+  +    + PN VTY+IL
Sbjct: 367 --LNQ--------RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSIL 416

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I   C  GQ+      E  F     + + G+ P++ TYN +I  +C+ G VS G     +
Sbjct: 417 IDSHCEKGQV------EDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQK 470

Query: 385 ILPSCFTPDAVTFTSLI 401
           ++ +  +PD +T+ +LI
Sbjct: 471 MMVNKVSPDLITYNTLI 487



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 44/211 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +FD MLN R  RP + ++N L   + +    D    L+  ++   +FP+  TY+I
Sbjct: 357 DKALQLFDTMLNQR-LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI 415

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC------------------- 171
           LI+  C+ G+V   F  L  ++     P+ +T+ S+IK  C                   
Sbjct: 416 LIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 475

Query: 172 ----------------AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
                            E ++ +A  L   +     + DV TYN LING    G+   A 
Sbjct: 476 VSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAG 535

Query: 216 NLFEEM-ANGNGEFGVVCEPDAITYSTIIDG 245
            +FE+M A G        EPD  TY ++I+G
Sbjct: 536 WIFEKMCAKG-------IEPDRYTYMSMING 559



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A    D M+N +   P + ++N +     ++ +        +++ +  + PD  TYN 
Sbjct: 427 EDAFGFLDEMIN-KGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNT 485

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ + K  ++   F +L  + +    PD VT+  LI        + EA  +F K+   G
Sbjct: 486 LIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKG 545

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            E D +TY ++ING    G++  A  L +EM
Sbjct: 546 IEPDRYTYMSMINGHVTAGNSKEAFQLHDEM 576



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 24/257 (9%)

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  +L S  TP    F  LI+      +  EA   F  +      +     N L+  L 
Sbjct: 12  IVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALS 71

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G   +A + +  + + N E       +  T + ++   CK       L F  + +  +
Sbjct: 72  RAGWPHLAADAYRLVFSSNSEV------NTYTLNIMVHNYCKA------LEFDKVDAVIS 119

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +    FP V    +      ++D   +    + A  L  S+   GL P +VTYN +++
Sbjct: 120 EMEKRCVFPDVVTHNV------MVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLK 173

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G  D+       + +FK ++  G+ PD+ ++ ILI  FC++G +     I+  + 
Sbjct: 174 GLCRSGMWDKA------WEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMR 227

Query: 387 PSCFTPDAVTFTSLIKI 403
                PD V+F+ LI +
Sbjct: 228 HRGIKPDLVSFSCLIGL 244


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 154/317 (48%), Gaps = 30/317 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FN L     +  + +  L +   +   G  PD YTYN LI+  CK+G       +
Sbjct: 261 PDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEI 320

Query: 148 LGR-ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L + ILR C +P+ VT+ +LI  LC E+ I  A  L   L   G   DV T+NTLI GLC
Sbjct: 321 LQQMILREC-SPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLC 379

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASF 264
            + +  +A+ +FEEM N        C+PD  TYS +ID LC E     A  L     +S 
Sbjct: 380 LSKNQDIAMEMFEEMKNKG------CKPDEFTYSILIDSLCYERRLKEALMLLKEMESSG 433

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            A N + +                LIDGLCK  +++ A E+F  +   G+  + VTYN L
Sbjct: 434 CARNAVVYN--------------TLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTL 479

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I GLC + +++E         L  ++   GL PD +TYN L+  FC++G +     I   
Sbjct: 480 IDGLCKNKRVEEASQ------LMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQT 533

Query: 385 ILPSCFTPDAVTFTSLI 401
           +  +   PD  T+ +LI
Sbjct: 534 MASNGCEPDIFTYGTLI 550



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 152/329 (46%), Gaps = 25/329 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ + + M N    +P   +F  L     +    +  L + K++   G      +  +L+
Sbjct: 177 AILMLEEMAN-HGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLV 235

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N FCK GRV      +  +    F+PD VTF SL+   C    + +A  +   +   G +
Sbjct: 236 NGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFD 295

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            DV+TYN+LI+G+C+ G    A+ + ++M          C P+ +TY+T+I  LCKE   
Sbjct: 296 PDVYTYNSLISGMCKLGEFEKAIEILQQMILRE------CSPNTVTYNTLISALCKE--- 346

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                 + + + + L ++     L+   C    F  LI GLC      IA E+F+ +   
Sbjct: 347 ------NEIEAATDLARILVSKGLLPDVC---TFNTLIQGLCLSKNQDIAMEMFEEMKNK 397

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  P+  TY+ILI  LC + ++ E        +L K + S+G   +   YN LI+  CK 
Sbjct: 398 GCKPDEFTYSILIDSLCYERRLKE------ALMLLKEMESSGCARNAVVYNTLIDGLCKS 451

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            R+     IF ++     +  +VT+ +LI
Sbjct: 452 RRIEDAEEIFDQMELLGVSRSSVTYNTLI 480



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 179/424 (42%), Gaps = 68/424 (16%)

Query: 22  TSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGD--------ITSITP-NE 72
           T S + + P  P  T  L+LT          L ++ KSSG           I S T  +E
Sbjct: 46  TPSSTTHHPLPPNETLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHE 105

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
              +   + N    +P    +NI    L +      V  L  ++   G+  D  T+N+LI
Sbjct: 106 IENLLKILENELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLI 165

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK------DL---------------- 170
              CK  ++    ++L  +      PD +TFT+L++      DL                
Sbjct: 166 KALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCL 225

Query: 171 -------------CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
                        C E R+ EA     ++   G   D  T+N+L+NG CR G+   AL++
Sbjct: 226 LTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDI 285

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
            + M     E G   +PD  TY+++I G+CK            +  F    ++     L 
Sbjct: 286 VDFMI----EKGF--DPDVYTYNSLISGMCK------------LGEFEKAIEILQQMILR 327

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                 + +  LI  LCK ++++ A +L + L   GL+P+V T+N LI+GLC       +
Sbjct: 328 ECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLC------LS 381

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           K+ +    +F+ + + G  PD +TY+ILI+  C   R+    ++   +  S    +AV +
Sbjct: 382 KNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVY 441

Query: 398 TSLI 401
            +LI
Sbjct: 442 NTLI 445



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 126/309 (40%), Gaps = 59/309 (19%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN L   L  +K+ D  + +F+ +   G  PD +TY+ILI+  C   R+    ++
Sbjct: 366 PDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALML 425

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +  S    +AV + +LI  LC   RI +A  +F ++ + G      TYNTLI+GLC+
Sbjct: 426 LKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCK 485

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A  L ++M           +PD  TY++++   C                    
Sbjct: 486 NKRVEEASQLMDQMIMEG------LKPDKFTYNSLLTYFC-------------------- 519

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                      ++  ++ A ++ Q++   G  P++ TY  LI G
Sbjct: 520 ---------------------------RVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGG 552

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G++D          L + +   G+    + YN +I       R   G  +F  ++ 
Sbjct: 553 LCRAGRVDVASK------LLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMME 606

Query: 388 SCFTPDAVT 396
               PDA+T
Sbjct: 607 KSDPPDALT 615



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 138/303 (45%), Gaps = 30/303 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ +F+ M N +  +P   +++IL   L   +     L L K +  +G   +   YN LI
Sbjct: 387 AMEMFEEMKN-KGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLI 445

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK  R+     +  ++     +  +VT+ +LI  LC   R+ EA+ L  ++ + G +
Sbjct: 446 DGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLK 505

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D FTYN+L+   CR G    A ++ + MA+ NG     CEPD  TY T+I GLC+ AG 
Sbjct: 506 PDKFTYNSLLTYFCRVGDIEKAGDIVQTMAS-NG-----CEPDIFTYGTLIGGLCR-AGR 558

Query: 253 ---ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              A+ L  S       L   A Y P+++              L    + K    LF+ +
Sbjct: 559 VDVASKLLRSVQMKGIVLTPHA-YNPVIQ-------------ALFMRKRTKEGMRLFREM 604

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
                 P+ +T+ I+ RGLCN G   +     TV +L K     G+ P+  ++  L    
Sbjct: 605 MEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEK-----GILPEFPSFGFLAEGL 659

Query: 370 CKI 372
           C +
Sbjct: 660 CSL 662


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 157/335 (46%), Gaps = 31/335 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++N +   L K +     +  F  +   G+ PD +TY+ +++ FC +GRV+    
Sbjct: 77  KPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATS 136

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  +++     P+ VTFT LI  LC +  I EA  +F  +   G E DV+TYN L++G C
Sbjct: 137 LFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYC 196

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A  LF  M          C P+  +Y+ +I+G CK        G     S  +
Sbjct: 197 SRSQMDEAQKLFNIMDRKG------CAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKS 250

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L    F +              L+ G C++ + + A+EL + +   GL+PN++TY+I++ 
Sbjct: 251 LTPDIFTYS------------TLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLD 298

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G +DE       F L K +  + + P+++ Y ILI   C  G++ +   +F  + 
Sbjct: 299 GLCKHGHLDE------AFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLF 352

Query: 387 PSCFTPDAVTFTSLIKIL-------EINSFFRQVA 414
                P  VT+T +I  L       E    FR++A
Sbjct: 353 VKGIQPTVVTYTVMISGLLKGGLSNEACELFREMA 387



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 157/314 (50%), Gaps = 28/314 (8%)

Query: 87  RPPVTSFNILF-GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           +P + +FN L  G  +K K  D V  LF  +   G  PD  TY+ +IN  CKMG  +   
Sbjct: 7   QPTLVTFNTLLSGLCSKAKIMDAV-KLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMAL 65

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +L ++      P+ V + ++I  LC +  + EA   F+++   G   DVFTY+++++G 
Sbjct: 66  QLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGF 125

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASF 264
           C  G    A +LF++M   N    V+  P+ +T++ +IDGLCK+   S  +L F  M   
Sbjct: 126 CNLGRVNEATSLFKQMVERN----VI--PNKVTFTILIDGLCKKRMISEAWLVFETMTE- 178

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             L    + +              L+DG C  S++  A++LF  + R G  PNV +YNIL
Sbjct: 179 KGLEPDVYTYN------------ALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNIL 226

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I G C  G++DE K       L   ++   L PD++TY+ L+  FC++GR      +   
Sbjct: 227 INGHCKSGRIDEAKG------LLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKE 280

Query: 385 ILPSCFTPDAVTFT 398
           +      P+ +T++
Sbjct: 281 MCSYGLLPNLITYS 294



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 157/342 (45%), Gaps = 25/342 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  +F  M+  R   P   +F IL   L K +       +F+ +   GL PD YTYN 
Sbjct: 132 NEATSLFKQMVE-RNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNA 190

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +C   ++     +   + R    P+  ++  LI   C   RI EA  L  ++    
Sbjct: 191 LVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKS 250

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+FTY+TL+ G C+ G    A  L +EM +    +G++  P+ ITYS ++DGLCK  
Sbjct: 251 LTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCS----YGLL--PNLITYSIVLDGLCKHG 304

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                       +F  L  M       +++     +  LI+G+C   KL+ ARELF +L 
Sbjct: 305 --------HLDEAFELLKAMQES----KIEPNIFIYTILIEGMCTFGKLEAARELFSNLF 352

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P VVTY ++I GL   G  +E         LF+ +   G  P+  TYN++I  F 
Sbjct: 353 VKGIQPTVVTYTVMISGLLKGGLSNEACE------LFREMAVNGCLPNSCTYNVIIQGFL 406

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           + G   +   +   ++   F+ D+ TF  L  +   +    Q
Sbjct: 407 RNGDTPNAVRLIEEMVGKGFSADSSTFRMLSDLESSDEIISQ 448



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 135/286 (47%), Gaps = 30/286 (10%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           GL P   T+N L++  C   ++     +   +++    PD +T++++I  LC       A
Sbjct: 5   GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMA 64

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L  K+   GC+ +V  YNT+I+ LC+      A++ F EM            PD  TY
Sbjct: 65  LQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEG------IPPDVFTY 118

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKI 296
           S+I+ G C               +   +N+    F  +  + +  N   F  LIDGLCK 
Sbjct: 119 SSILHGFC---------------NLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKK 163

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
             +  A  +F+++   GL P+V TYN L+ G C+  QMDE +       LF  ++  G  
Sbjct: 164 RMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQK------LFNIMDRKGCA 217

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           P++ +YNILIN  CK GR+     +   +     TPD  T+++L++
Sbjct: 218 PNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMR 263



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 18/174 (10%)

Query: 228 FGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
           F +  +P  +T++T++ GLC +A   + +       F  + KM  + P V      + + 
Sbjct: 2   FKLGLQPTLVTFNTLLSGLCSKAKIMDAVKL-----FDEMVKMG-HEPDV------ITYS 49

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            +I+GLCK+    +A +L + +   G  PNVV YN +I  LC D  + E   +      F
Sbjct: 50  TIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDF------F 103

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +   G+ PD++TY+ +++ FC +GRV+    +F +++     P+ VTFT LI
Sbjct: 104 SEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILI 157



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 311 RAGLMPNVVTYNILIRGLCNDGQ-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
           + GL P +VT+N L+ GLC+  + MD  K       LF  +   G  PD+ TY+ +IN  
Sbjct: 3   KLGLQPTLVTFNTLLSGLCSKAKIMDAVK-------LFDEMVKMGHEPDVITYSTIINGL 55

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           CK+G  +    +  ++      P+ V + ++I  L
Sbjct: 56  CKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSL 90


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 177/370 (47%), Gaps = 49/370 (13%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNEALCVFDYML-NMRPSRPPVTSFNILFGCLAKTKHY 106
            LE+ +  R +S       S+   +AL +FD +L   RP+   V +FN +   +A+    
Sbjct: 14  ELERIILNRHRSG------SLGREDALNLFDELLPQARPA--SVHAFNSVLTVVARADSS 65

Query: 107 DT-------VLSLFKRLNLTG---LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF 156
            +        +SLF  +  +G   +  +RY   ILI CFC +GR+   F      L+  +
Sbjct: 66  SSPRHSAALAVSLFNTMARSGVNMMAANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGW 125

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAAL-FTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
               VT   LIK LC   R  +A  + F ++   G   DVF+YN LI GLC    +  AL
Sbjct: 126 RVQNVTLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEAL 185

Query: 216 NLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
            L   M A+G    G  C P+ ++YSTIIDG  KE                 ++K  F F
Sbjct: 186 ELLLHMTADG----GYNCSPNVVSYSTIIDGFFKEG---------------EVDKAYFLF 226

Query: 275 PLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
             +  Q      + +  LIDGLCK   +  A  + Q +   G+MPN  TYNI+IRG C+ 
Sbjct: 227 DEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSL 286

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           GQ++E         L K+++ +GL PD+ TY +LI  +CKIGR +    +F  ++     
Sbjct: 287 GQLEEA------VRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQK 340

Query: 392 PDAVTFTSLI 401
           P++  +  L+
Sbjct: 341 PNSTIYHILL 350



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 156/334 (46%), Gaps = 35/334 (10%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +FNIL    AK    D  ++ F  +   GL PD  +Y+ +I+  CK+GRV        ++
Sbjct: 380 AFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQM 439

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +    +P+ ++FTSLI  LC+     +   L  ++   G   D    NT+++ LC+ G  
Sbjct: 440 VSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRV 499

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMAS------- 263
           + A + F+ + +      +  +P+ ++Y+T+IDG C       +   F  M S       
Sbjct: 500 VEAQDFFDMVIH------IGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDS 553

Query: 264 --FSAL-----------NKMAFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQS 308
             ++AL           + +A Y  + R  V+   +    ++ GL +  ++  AREL+  
Sbjct: 554 WTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMK 613

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G    + TYN ++ GLC +  +DE         +F+ L S     D++T+NI+IN 
Sbjct: 614 MVDRGTQLRIETYNTVLGGLCENSCVDEA------LRMFEDLRSKEFELDVWTFNIVINA 667

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             K+GR+     +F  ++     P  +T++ +IK
Sbjct: 668 LLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIK 701



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 158/347 (45%), Gaps = 60/347 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  +  +M + +   P   ++NI+          +  + L K+++ +GL PD  TY +
Sbjct: 255 NKAEAILQHMFD-KGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYIL 313

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL------------IKDL-------- 170
           LI  +CK+GR +    V   ++R    P++  +  L            ++DL        
Sbjct: 314 LIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDG 373

Query: 171 ------------CAESR---IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
                       CA ++   + +A   FT++R  G   DV +Y+T+I+ LC+ G    A+
Sbjct: 374 IPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAV 433

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
             F +M +          P+ I+++++I GLC             +  +  + ++AF   
Sbjct: 434 YHFNQMVSEG------LSPNIISFTSLIHGLC------------SIGEWKKVEELAFEMI 475

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
              +    +    ++D LCK  ++  A++ F  +   G+ PNVV+YN LI G C  G+MD
Sbjct: 476 NRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMD 535

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           E+         F R+ S GL PD +TYN L+N + K GRV     ++
Sbjct: 536 ES------IKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALY 576



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 144/332 (43%), Gaps = 25/332 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++ +     K    D    LF  +   G  PD  TY+ LI+  CK   ++    +
Sbjct: 201 PNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAI 260

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P+  T+  +I+  C+  ++ EA  L  K+   G + DV TY  LI   C+
Sbjct: 261 LQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCK 320

Query: 208 TGHTIVALNLFEEMA---------------NGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            G    A ++F+ M                +G    G + +   +    I DG+  E  +
Sbjct: 321 IGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRA 380

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSL 309
            N L     A   A++K    F  +R   L    +++  +I  LCKI +++ A   F  +
Sbjct: 381 FNIL-ICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQM 439

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              GL PN++++  LI GLC+ G+  + +  E  F +  R    G+ PD    N +++  
Sbjct: 440 VSEGLSPNIISFTSLIHGLCSIGEWKKVE--ELAFEMINR----GIHPDAIFMNTIMDNL 493

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK GRV      F  ++     P+ V++ +LI
Sbjct: 494 CKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLI 525



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 142/342 (41%), Gaps = 60/342 (17%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA   FD ++++   +P V S+N L          D  +  F R+   GL PD +TYN L
Sbjct: 501 EAQDFFDMVIHI-GVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNAL 559

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N + K GRV     +   + R      A+T   ++  L    RI+ A  L+ K+   G 
Sbjct: 560 LNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGT 619

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           +L + TYNT++ GLC       AL +FE++   + EF    E D  T++ +I+ L     
Sbjct: 620 QLRIETYNTVLGGLCENSCVDEALRMFEDLR--SKEF----ELDVWTFNIVINAL----- 668

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                      K+ ++  A+ LF ++  
Sbjct: 669 ------------------------------------------LKVGRIDEAKSLFSAMVL 686

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G +P+V+TY+++I+    +G ++E+        LF  +   G   D +  N++I    +
Sbjct: 687 RGPVPHVITYSLMIKSRIEEGLLEESDD------LFLSMEKNGCAADSHMLNVIIRRLLE 740

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
            G V        +I    F+ +A T   LI I+    + ++V
Sbjct: 741 KGDVRRAGTYLTKIDEKNFSVEASTAALLIPIVSEKKYQKEV 782


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 164/355 (46%), Gaps = 51/355 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-HYDTVLSLFKRLNLTGLFPDRYTYN 129
           + A+  F+ M  +R + P +  FN +   L KTK HY TVLSL  ++   G+ PD +T +
Sbjct: 48  DNAVLSFNRMRQIRQT-PSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLS 106

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           ILINC+C +G+++  F V  +IL+                LC   ++ EA      +   
Sbjct: 107 ILINCYCHLGQMTFAFSVFAKILKM--------------GLCLNGKVNEALLFHDHVLAL 152

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G  L+  TY  LINGLC+ G T  AL +  ++       G +   + + YSTIIDGLCK+
Sbjct: 153 GFHLNHVTYGILINGLCKMGQTRAALQVLRQIE------GKLVNTNVVMYSTIIDGLCKD 206

Query: 250 AGSANFLGF-----------------SCMASFSALNKMAFYFPLVRVQCL------CLNF 286
               +  G                  S +  F  + K    F L     +         F
Sbjct: 207 KLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTF 266

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             L+D LCK  K+K A+ +   + + G+ P VVTYN L+ G C   ++ + KH   V  +
Sbjct: 267 NILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKH---VLSI 323

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             R+    + P+  +YNI+IN FCKI  V     +F  +      P  VT+ SLI
Sbjct: 324 ISRMR---VAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLI 375



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 137/298 (45%), Gaps = 31/298 (10%)

Query: 106 YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           +D VL+L       G   +  TY ILIN  CKMG+      VL +I       + V +++
Sbjct: 146 HDHVLAL-------GFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYST 198

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
           +I  LC +  + +A  L++++ V      V T+++LI G C  G    A  LF EM   N
Sbjct: 199 IIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKN 258

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN 285
                   PDA T++ ++D LCKE                A N +A       V+   + 
Sbjct: 259 ------INPDAYTFNILVDALCKEGKIK-----------EAKNVIAVMMK-EGVEPTVVT 300

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  L+DG C ++++  A+ +   + R  + PN  +YNI+I G C    +DE         
Sbjct: 301 YNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEA------LC 354

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           LF  +   G+ P   TYN LI+  CK GR+   + +   +  +C   D VT+ SLI +
Sbjct: 355 LFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDV 412



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 138/299 (46%), Gaps = 27/299 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +F+ M+ M+   P   +FNIL   L K        ++   +   G+ P   TYN L
Sbjct: 246 DAFRLFNEMV-MKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTL 304

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ +C +  V     VL  I R    P++ ++  +I   C    + EA  LF ++   G 
Sbjct: 305 MDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGI 364

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP-DAITYSTIIDGLCKEA 250
                TYN+LI+GLC+ G    A  L +EM N        C P D +TY+++ID  CK  
Sbjct: 365 APHKVTYNSLIDGLCKAGRIPYAWELVDEMHNN-------CIPADIVTYNSLIDVFCKNQ 417

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                       + + + K+  +     +Q     +  LIDGLCK  +LK A+++FQ L 
Sbjct: 418 --------HVDKAIALVKKIKEH----GIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLL 465

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             G   N  TYNI+I GLC +G  DE +      +L  ++   G+ PD  TY  +I   
Sbjct: 466 IKGYNVNAWTYNIMINGLCKEGLFDEAE------VLLSKMEDNGIIPDAVTYETIIQAL 518



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 156/347 (44%), Gaps = 53/347 (15%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  ++ +   L K K       L+  + +  + P   T++ LI  FC +G+    F +  
Sbjct: 193 VVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFN 252

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC--- 206
            ++     PDA TF  L+  LC E +I EA  +   +   G E  V TYNTL++G C   
Sbjct: 253 EMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVN 312

Query: 207 ---RTGHTI-------VALN--LFEEMANGNGEFGVVCE--------------PDAITYS 240
              +  H +       VA N   +  M NG  +  +V E              P  +TY+
Sbjct: 313 EVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYN 372

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKIS 297
           ++IDGLCK AG   +       ++  +++M          C+    + +  LID  CK  
Sbjct: 373 SLIDGLCK-AGRIPY-------AWELVDEM-------HNNCIPADIVTYNSLIDVFCKNQ 417

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
            +  A  L + +   G+ PN+ TYNILI GLC  GQ+   +       +F+ L   G   
Sbjct: 418 HVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQD------VFQDLLIKGYNV 471

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + +TYNI+IN  CK G      V+  ++  +   PDAVT+ ++I+ L
Sbjct: 472 NAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQAL 518



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 116/258 (44%), Gaps = 30/258 (11%)

Query: 87  RPPVTSFNILFG--CL----AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
            P V ++N L    CL     K KH   VLS+  R+ +    P+  +YNI+IN FCK+  
Sbjct: 295 EPTVVTYNTLMDGYCLVNEVGKAKH---VLSIISRMRVA---PNSRSYNIMINGFCKIKM 348

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V     +   +      P  VT+ SLI  LC   RI  A  L  ++       D+ TYN+
Sbjct: 349 VDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNS 408

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+  C+  H   A+ L +++     E G+  +P+  TY+ +IDGLCK     N      
Sbjct: 409 LIDVFCKNQHVDKAIALVKKIK----EHGI--QPNMCTYNILIDGLCKGGQLKNAQDVFQ 462

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                  N  A+ + +            +I+GLCK      A  L   +   G++P+ VT
Sbjct: 463 DLLIKGYNVNAWTYNI------------MINGLCKEGLFDEAEVLLSKMEDNGIIPDAVT 510

Query: 321 YNILIRGLCNDGQMDETK 338
           Y  +I+ L +  + ++ +
Sbjct: 511 YETIIQALFHKDENEKAQ 528



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++N L     K +H D  ++L K++   G+ P+  TYNILI+  CK G++ +   V  
Sbjct: 403 IVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQ 462

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +L   +  +A T+  +I  LC E    EA  L +K+   G   D  TY T+I  L    
Sbjct: 463 DLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKD 522

Query: 210 HTIVALNLFEEM 221
               A  L  EM
Sbjct: 523 ENEKAQKLLREM 534



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 1/130 (0%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++NIL   L K         +F+ L + G   + +TYNI+IN  CK G      V
Sbjct: 435 QPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEV 494

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY-NTLINGL 205
           +L ++  +   PDAVT+ ++I+ L  +    +A  L  ++ + G  +  F    TL+   
Sbjct: 495 LLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGVVVYAFEIRRTLVGRT 554

Query: 206 CRTGHTIVAL 215
              G  +++L
Sbjct: 555 LNLGMNLISL 564


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 191/450 (42%), Gaps = 104/450 (23%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNEALCVFDYML-NMRPSRPPVTSFNILFGCLAK---- 102
            LE+ +  R +S       S+  ++AL +FD +L + RP+   V +FN L   +++    
Sbjct: 14  ELERVIGSRARSG------SLGLDDALKLFDGLLTHARPA--SVIAFNHLLTAVSRVSGR 65

Query: 103 ---TKHYDTVLSLFKRLN---LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF 156
              T   + V+SLF R+       + PD  TY+ILI CFC+MGR+ HGF   G IL+S +
Sbjct: 66  RSSTTESELVVSLFNRMIRECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGW 125

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTK-LRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             + +    L+K LC   R+ EA  +  K +   GC  DV +YNTL+ G C       AL
Sbjct: 126 RVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEAL 185

Query: 216 NLFEEMANGNGE--------FGVV------------------------CEPDAITYSTII 243
            L   MA+  G         + +V                         +P+ +TY+T+I
Sbjct: 186 ELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVI 245

Query: 244 DGLCK---------------------EAGSANFL--GFSCMASFSALNKMAFYFPLVRVQ 280
           DGLCK                     +  + N L  G+  +  +  + +M        ++
Sbjct: 246 DGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLK 305

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK-- 338
             C  +  L++ LC   + + AR LF S+ R G+ PNV  Y ILI G    G + E    
Sbjct: 306 PDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDL 365

Query: 339 ------------HY---------------ETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
                       H+               +    +F ++   GL PD+  Y  LI+  CK
Sbjct: 366 LNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCK 425

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +GRV    + F +++     P+   F SL+
Sbjct: 426 LGRVDDAVLKFNQMMNEGVAPNIFVFNSLV 455



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 169/394 (42%), Gaps = 59/394 (14%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           G  T    ++A  +F  M++ R  +P V ++  +   L K +  D    +F+++   G+ 
Sbjct: 212 GFFTEGQVDKAYNLFLEMMD-RGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVK 270

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD  TYN LI+ +  +G+      +L  +      PD  T+ SL+  LC   R  EA  L
Sbjct: 271 PDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFL 330

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTG-----HTIVALNLFEEMANGNGEFGVV------ 231
           F  +   G + +V  Y  LI+G    G     H ++ L +   ++  +  F ++      
Sbjct: 331 FDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAK 390

Query: 232 ------------------CEPDAITYSTIIDGLCK----------------EAGSANFLG 257
                               PD + Y  +ID LCK                E  + N   
Sbjct: 391 KAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFV 450

Query: 258 FSCMA-SFSALNKM----AFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           F+ +      ++K      FYF ++   ++   + F  ++  LC   ++  A+ L   + 
Sbjct: 451 FNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLME 510

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R G  P V++Y  LI G C  G++DE      V L      S GL PD +TYN L++ +C
Sbjct: 511 RVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVML------SVGLKPDEWTYNTLLHGYC 564

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + GR+   + +F  +L +  TP  VT+++++  L
Sbjct: 565 RAGRIDDAYGVFREMLRNGITPGVVTYSTILHGL 598



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 149/336 (44%), Gaps = 29/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ M+N     P +  FN L   L     ++     +  +   G+ PD   +N 
Sbjct: 430 DDAVLKFNQMMN-EGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNT 488

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++   C  G+V     ++  + R    P  +++T+LI   C   RI EAA     +   G
Sbjct: 489 ILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVG 548

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CK 248
            + D +TYNTL++G CR G    A  +F EM   NG       P  +TYSTI+ GL   +
Sbjct: 549 LKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLR-NG-----ITPGVVTYSTILHGLFTTR 602

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
               A  L  + + S    N   +                +++GL K + +  A +LFQS
Sbjct: 603 RFSEAKELYLNMITSGKQWNIWIYNI--------------ILNGLSKNNCVDEAFKLFQS 648

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L        + T+NI+I  L   G+ ++  H      LF  ++S GL PD++TY ++   
Sbjct: 649 LCSKDFQLEITTFNIMIGALFKSGRNEDAMH------LFATISSYGLVPDVFTYCLIAEN 702

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             + G +     +F  +  S  TP++    +L++ L
Sbjct: 703 LIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRL 738



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 148/350 (42%), Gaps = 27/350 (7%)

Query: 72  EALCVFDYMLNM--RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           EAL +   M +   R   P V S+ I+          D   +LF  +   G+ P+  TY 
Sbjct: 183 EALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYT 242

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +I+  CK   V     V  +++     PD  T+  LI    +  +  E   +  ++   
Sbjct: 243 TVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAH 302

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEM---------------ANGNGEFGVVCEP 234
           G + D +TY +L+N LC  G    A  LF+ M                +G    G + E 
Sbjct: 303 GLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEM 362

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLID 291
             +    + +GL  +    N + F+  A  + +++    F  ++ Q L    +N+  LID
Sbjct: 363 HDLLNLMVENGLSPDHHIFNII-FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALID 421

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
            LCK+ ++  A   F  +   G+ PN+  +N L+ GLC   + ++ K +      F+ LN
Sbjct: 422 ALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEF-----YFEMLN 476

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             G+ PD+  +N ++   C  G+V     +   +      P  +++T+LI
Sbjct: 477 Q-GIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLI 525



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 20/256 (7%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           +RP V S+  L G        D        +   GL PD +TYN L++ +C+ GR+   +
Sbjct: 514 TRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAY 573

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            V   +LR+  TP  VT+++++  L    R  EA  L+  +   G + +++ YN ++NGL
Sbjct: 574 GVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGL 633

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASF 264
            +      A  LF+ + + + +  +       T++ +I  L K   + + +  F+ ++S+
Sbjct: 634 SKNNCVDEAFKLFQSLCSKDFQLEIT------TFNIMIGALFKSGRNEDAMHLFATISSY 687

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             +       P V   CL      + + L +   L+   +LF ++ ++G  PN    N L
Sbjct: 688 GLV-------PDVFTYCL------IAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNAL 734

Query: 325 IRGLCNDGQMDETKHY 340
           +R L + G +     Y
Sbjct: 735 VRRLLHRGDITRAGAY 750



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 4/110 (3%)

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCN-DGQMDETKHYETVFLLFKRLN---STG 354
           L  A +LF  L       +V+ +N L+  +    G+   T   E V  LF R+    +  
Sbjct: 30  LDDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + PD  TY+ILI CFC++GR+  GF  FG IL S +  + +    L+K L
Sbjct: 90  VTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGL 139



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 7/149 (4%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           ++LC  D+ L        +T+FNI+ G L K+   +  + LF  ++  GL PD +TY ++
Sbjct: 647 QSLCSKDFQLE-------ITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLI 699

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
                + G +     +   + +S  TP++    +L++ L     I  A A   KL     
Sbjct: 700 AENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLCKLDEKNF 759

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEE 220
            L+  T   LI+ L R  +   A +L E+
Sbjct: 760 SLEASTTAMLISLLSRDEYHHHATSLPEK 788


>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 567

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/333 (33%), Positives = 164/333 (49%), Gaps = 30/333 (9%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL-FPDRYTYNILINCF 135
           F  ML + P  P +  FN+LFG +AK++H+ T +SL K L+  G    D  T NILINC 
Sbjct: 64  FHRMLTLNPF-PCIQDFNLLFGIVAKSQHFATAISLIKTLHSLGYEIADVCTLNILINCL 122

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES---RIMEAAALFTKLRVF--- 189
           C++ + + GF VLG + +    P  VT  ++   LC  +   +I + +     L+     
Sbjct: 123 CRLRKTTLGFAVLGLMTKIGLEPTLVTLNTIANGLCIVNGLCKIGDTSGALESLKKMVKR 182

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-CEPDAITYSTIIDGLCK 248
             E +V  YN +++GLC+ G    AL LF EM       GVV  EP+ +TY+ +I GLC 
Sbjct: 183 NLEPNVVVYNAILDGLCKRGLVGEALGLFYEM-------GVVNVEPNVVTYNCLIQGLCG 235

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           E G         +  F+ +       P V+       F  L++G CK   L  A  +   
Sbjct: 236 EVGGWR----EGVGLFNEMVAEKGIVPDVQ------TFSILVNGFCKEGLLLRAESMVGF 285

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + R G+  NVVTYN LI G C   +M+E      VF L  R    G  P + TYN LI+ 
Sbjct: 286 MIRIGVELNVVTYNSLISGYCLRNRMEEAVR---VFDLMVR-EGEGCLPSVVTYNSLIHG 341

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +CK+ +V+    +   ++     PD  T+TSLI
Sbjct: 342 WCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLI 374



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 162/371 (43%), Gaps = 54/371 (14%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILF-GCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYN 129
           EAL +F Y + +    P V ++N L  G   +   +   + LF  +    G+ PD  T++
Sbjct: 206 EALGLF-YEMGVVNVEPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQTFS 264

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL--R 187
           IL+N FCK G +     ++G ++R     + VT+ SLI   C  +R+ EA  +F  +   
Sbjct: 265 ILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVRE 324

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL- 246
             GC   V TYN+LI+G C+      A++L  EM  G G      +PD  T++++I G  
Sbjct: 325 GEGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMV-GKG-----LDPDVFTWTSLIGGFF 378

Query: 247 --------------CKEAGSAN---------------FLGFSCMASFSALNKMAFYFPLV 277
                          K+ G                  +L    M  F A+ K      +V
Sbjct: 379 EVGKPLAAKELFITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDIV 438

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                   +  ++DG+CK+ KL  AR+L   +   GL  +  T+NI+I+GLC +G +D+ 
Sbjct: 439 I-------YNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDA 491

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           +       L +++   G  P+  +YN+ +    +   +S        +    F  DA T 
Sbjct: 492 EE------LLRKMKENGCPPNKCSYNVFVQGLLRKYDISRSRKYLQIMKDKGFPVDATTA 545

Query: 398 TSLIKILEINS 408
             LI+ L  N 
Sbjct: 546 ELLIRFLSANE 556


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 156/314 (49%), Gaps = 31/314 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           VTS+N+L     K+   +  L +  R+   G+ P+  TY+ ++   C  G++     VLG
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R L+S   PD VT T LI   C ES + +A  LF ++R  GC+ DV TYN LI G C+ G
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGG 265

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+   +++ +    +G  C+PD I+++ I+  LC              +    ++ 
Sbjct: 266 RLDEAIRFLKKLPS----YG--CQPDVISHNMILRSLC--------------SGGRWMDA 305

Query: 270 MAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           M     ++R  CL   + F  LI+ LC+   L  A  + + +P+ G  PN  ++N LI+G
Sbjct: 306 MKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQG 365

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            CN   +D    Y  + +      S G +PD+ TYNIL+   CK G+V    VI  ++  
Sbjct: 366 FCNGKGIDRAIEYLEIMV------SRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSS 419

Query: 388 SCFTPDAVTFTSLI 401
              +P  +++ ++I
Sbjct: 420 KGCSPSLISYNTVI 433



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 147/344 (42%), Gaps = 47/344 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +  +L     K       + LF  +   G  PD  TYN+LI  FCK GR+      
Sbjct: 214 PDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRF 273

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++      PD ++   +++ LC+  R M+A  L   +   GC   V T+N LIN LC+
Sbjct: 274 LKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQ 333

Query: 208 TGHTIVALNLFEEMA-------------------NGNG-----EFGVV-----CEPDAIT 238
            G    ALN+ E M                    NG G     E+  +     C PD +T
Sbjct: 334 KGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVT 393

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+ ++  LCK+    +      +   S L+       L+       ++  +IDGL K+ K
Sbjct: 394 YNILLTALCKDGKVDD-----AVVILSQLSSKGCSPSLI-------SYNTVIDGLLKVGK 441

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
            ++A EL + +   GL P+++T   ++ GL  +G++ E   +      F  L    + P+
Sbjct: 442 AELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKF------FHYLKRFAIRPN 495

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            + YN +I   CK  + S        ++     P   T+T+LIK
Sbjct: 496 AFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIK 539



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 119/269 (44%), Gaps = 33/269 (12%)

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G +  G   L  +     +PD +  T+LI++ C   R   A+ +   L   G  +DV +Y
Sbjct: 93  GELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSY 152

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC---KEAGSANF 255
           N LI+G C++G    AL + + M            P+A TY  ++  LC   K   +   
Sbjct: 153 NVLISGYCKSGEIEEALRVLDRMG---------VSPNAATYDAVLCSLCDRGKLKQAMQV 203

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           LG    +           +P V V C       LID  CK S +  A +LF  +   G  
Sbjct: 204 LGRQLQSKC---------YPDV-VTC-----TVLIDATCKESGVGQAMKLFNEMRNKGCK 248

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+VVTYN+LI+G C  G++DE   +       K+L S G  PD+ ++N+++   C  GR 
Sbjct: 249 PDVVTYNVLIKGFCKGGRLDEAIRF------LKKLPSYGCQPDVISHNMILRSLCSGGRW 302

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                +   +L     P  VTF  LI  L
Sbjct: 303 MDAMKLLATMLRKGCLPSVVTFNILINFL 331



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 116/251 (46%), Gaps = 20/251 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FNIL   L +       L++ + +   G  P+  ++N LI  FC    +      
Sbjct: 319 PSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEY 378

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  ++ R C+ PD VT+  L+  LC + ++ +A  + ++L   GC   + +YNT+I+GL 
Sbjct: 379 LEIMVSRGCY-PDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLL 437

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G   +A+ L EEM           +PD IT ++++ GL +E      + F     F  
Sbjct: 438 KVGKAELAVELLEEMCYKG------LKPDLITCTSVVGGLSREGKVREAMKF-----FHY 486

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L + A     +R      N   +I GLCK  +  +A +    +   G  P   TY  LI+
Sbjct: 487 LKRFA-----IRPNAFIYN--SIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIK 539

Query: 327 GLCNDGQMDET 337
           G+  +G  ++ 
Sbjct: 540 GITYEGLAEDA 550



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 64/173 (36%), Gaps = 35/173 (20%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P + ++NIL   L K    D  + +  +L+  G  P   +YN +I+   K+G+   
Sbjct: 385 RGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAEL 444

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF-------------- 189
              +L  +      PD +T TS++  L  E ++ EA   F  L+ F              
Sbjct: 445 AVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIIT 504

Query: 190 ---------------------GCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
                                GC+    TY TLI G+   G    A  L  E+
Sbjct: 505 GLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNEL 557



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 9/109 (8%)

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           L +  +L+      + +   G  P+V+    LIR  C  G+   TK+   +  +   L  
Sbjct: 89  LIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGR---TKNASQIMGI---LEE 142

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +G   D+ +YN+LI+ +CK G +     +  R+     +P+A T+ +++
Sbjct: 143 SGAVIDVTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVL 188


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 153/320 (47%), Gaps = 30/320 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFK-RLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           V  +NI+   L +       L +F+  +   G+ P   TYN +IN  CK   +  G  + 
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
             ++     PD VT+ +LI  LC    + EA  L   +   GC  +V TY+ LINGLC+ 
Sbjct: 61  EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKV 120

Query: 209 GHTIVALNLFEEMANGNGEFGVVCE--PDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           G    A  L +EM   +      C+  P+ ITY++ +DGLCK++ +A     +C    S 
Sbjct: 121 GRIDEARELIQEMTRKS------CDVLPNIITYNSFLDGLCKQSMTAE----ACELMRSL 170

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            +        +RV    + F  LIDGLCK  ++  A  +F  +   G +PNV+TYN L+ 
Sbjct: 171 RDGS------LRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 224

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC   +M      E    + + +   G+ PD+ TY++L++ FCK  RV     +   + 
Sbjct: 225 GLCKADKM------ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMA 278

Query: 387 -----PSCFTPDAVTFTSLI 401
                P+   PD VTF  LI
Sbjct: 279 SRGCTPNVLVPDKVTFNILI 298



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 161/341 (47%), Gaps = 33/341 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +F   +      P + ++N +   L K+      + LF+ L   G  PD  TYN LI
Sbjct: 20  ALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLI 79

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +     + G +      P+ VT++ LI  LC   RI EA  L  ++    C+
Sbjct: 80  DSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCD 139

Query: 193 L--DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           +  ++ TYN+ ++GLC+   T  A  L   + +G+    +   PD +T+ST+IDGLCK  
Sbjct: 140 VLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGS----LRVSPDTVTFSTLIDGLCK-- 193

Query: 251 GSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                +  +C    S  + M    Y P V      + +  L++GLCK  K++ A  + +S
Sbjct: 194 --CGQIDEAC----SVFDDMIAGGYVPNV------ITYNALVNGLCKADKMERAHAMIES 241

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG-----LFPDLYTYN 363
           +   G+ P+V+TY++L+   C   ++DE         L   + S G     L PD  T+N
Sbjct: 242 MVDKGVTPDVITYSVLVDAFCKASRVDEA------LELLHGMASRGCTPNVLVPDKVTFN 295

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ILI   CK G       +F  ++     PD +TF +LI  L
Sbjct: 296 ILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGL 336



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 162/388 (41%), Gaps = 79/388 (20%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V ++N L   L K    +    L   ++  G  P+  TY++LIN  CK+GR+  
Sbjct: 66  RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDE 125

Query: 144 GFVVLGRILR-SC--------------------------------------FTPDAVTFT 164
              ++  + R SC                                       +PD VTF+
Sbjct: 126 ARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFS 185

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           +LI  LC   +I EA ++F  +   G   +V TYN L+NGLC+      A  + E M + 
Sbjct: 186 TLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDK 245

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEA----------GSAN-----------------FLG 257
               GV   PD ITYS ++D  CK +          G A+                  + 
Sbjct: 246 ----GVT--PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIA 299

Query: 258 FSCMA-SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
            +C A +F   + +        +Q   + F  LIDGLCK  +++ AR++   +   G+ P
Sbjct: 300 GACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP 359

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           NVVTYN L+ GLC  G+++E   +       + + S+G  PD  TY  L+   C+  R  
Sbjct: 360 NVVTYNALVHGLCKSGRIEEACQF------LEEMVSSGCVPDSITYGSLVYALCRASRTD 413

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               +   +    + PD VT+  L+  L
Sbjct: 414 DALQLVSELKSFGWDPDTVTYNILVDGL 441



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 143/317 (45%), Gaps = 29/317 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +F+ L   L K    D   S+F  +   G  P+  TYN L+N  CK  ++     +
Sbjct: 179 PDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAM 238

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF-----TYNTLI 202
           +  ++    TPD +T++ L+   C  SR+ EA  L   +   GC  +V      T+N LI
Sbjct: 239 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILI 298

Query: 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA 262
            G C+ G+   A  LFEEM   N       +PD +T+  +IDGLCK AG          A
Sbjct: 299 AGACKAGNFEQASALFEEMVAKN------LQPDVMTFGALIDGLCK-AGQVE-------A 344

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
           +   L+ M        V    + +  L+ GLCK  +++ A +  + +  +G +P+ +TY 
Sbjct: 345 ARDILDLMGNLGVPPNV----VTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYG 400

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            L+  LC   + D+         L   L S G  PD  TYNIL++   K G+      + 
Sbjct: 401 SLVYALCRASRTDDA------LQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVL 454

Query: 383 GRILPSCFTPDAVTFTS 399
             ++     PD+ TF +
Sbjct: 455 EEMVGKGHQPDSFTFAA 471



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 10/187 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  +F+ M+  +  +P V +F  L   L K    +    +   +   G+ P+  TYN 
Sbjct: 308 EQASALFEEMV-AKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNA 366

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK GR+      L  ++ S   PD++T+ SL+  LC  SR  +A  L ++L+ FG
Sbjct: 367 LVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFG 426

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D  TYN L++GL ++G T  A+ + EEM  G G      +PD+ T++    GL +  
Sbjct: 427 WDPDTVTYNILVDGLWKSGKTEQAITVLEEMV-GKGH-----QPDSFTFAACFSGLHR-- 478

Query: 251 GSANFLG 257
            S N  G
Sbjct: 479 -SGNLAG 484



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 9/174 (5%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           + D M N+    P V ++N L   L K+   +      + +  +G  PD  TY  L+   
Sbjct: 348 ILDLMGNLGVP-PNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYAL 406

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+  R      ++  +    + PD VT+  L+  L    +  +A  +  ++   G + D 
Sbjct: 407 CRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDS 466

Query: 196 FTYNTLINGLCRTGHTIVALNLFE-EMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           FT+    +GL R+G+    + L    +A G         PDA T S+I+D +C+
Sbjct: 467 FTFAACFSGLHRSGNLAGTMELLRVVLAKG-------MLPDATTCSSILDWVCR 513



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 50/122 (40%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  L   L +    D  L L   L   G  PD  TYNIL++   K G+      V
Sbjct: 394 PDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITV 453

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     PD+ TF +    L     +     L   +   G   D  T +++++ +CR
Sbjct: 454 LEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCR 513

Query: 208 TG 209
           +G
Sbjct: 514 SG 515



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           V  YNI+++ LC  G  D  +  E   +    +   G+ P + TYN +IN  CK   + +
Sbjct: 1   VADYNIVLQSLCRAG--DTARALE---IFRGEMARDGVAPTIVTYNTIINGLCKSNDLGA 55

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G  +F  ++     PD VT+ +LI  L
Sbjct: 56  GMELFEELVERGHHPDVVTYNTLIDSL 82


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 114/367 (31%), Positives = 176/367 (47%), Gaps = 43/367 (11%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNEALCVFDYML-NMRPSRPPVTSFNILFGCLAK---- 102
            LE+ +  R +S       S+  ++AL +FD +L + RP+   + +FN L   +++    
Sbjct: 14  ELERVIGSRARSG------SLGLDDALKLFDGLLTHARPA--SIIAFNHLLTAVSRVSGR 65

Query: 103 ---TKHYDTVLSLFKRLN---LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF 156
              T   + V+SLF R+       + PD  TY+ILI CFC+MGR+ HGF   G IL+S +
Sbjct: 66  RSSTTESELVVSLFNRMIRECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGW 125

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTK-LRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             + +    L+K LC   R+ EA  +  K +   GC  DV +YNTL+ G C       AL
Sbjct: 126 RVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEAL 185

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            L   MA+  G     C P+ ++Y+T+I+G   E G  +           A N   F   
Sbjct: 186 ELLHMMADSQGR---SCPPNVVSYATVINGFFTE-GQVD----------KAYN--LFLEM 229

Query: 276 LVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
           + R +Q   + +  +IDGLCK   +  A  +FQ +   G+ P+  TYN LI G  + G+ 
Sbjct: 230 MDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKW 289

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
            E      V  + + +++ GL PD YTY  L+N  C  GR       F  ++     P+ 
Sbjct: 290 KE------VVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNV 343

Query: 395 VTFTSLI 401
             +  LI
Sbjct: 344 AIYGILI 350



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 137/333 (41%), Gaps = 60/333 (18%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA   FD M+  +  +P V  + IL    A       +  L   +   GL PD + +NI+
Sbjct: 326 EARFFFDSMIR-KGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
              + K   +     +  ++ +   +PD V F +LI  LC   R+ +A   F ++   G 
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGV 444

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             ++F +N+L+ GLC       A   + EM N          PD + ++TI+  LC +  
Sbjct: 445 APNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQG------IRPDVVFFNTILCNLCTKG- 497

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                         ++  A+ L   + R
Sbjct: 498 ----------------------------------------------QVMKAQRLIDLMER 511

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G  P+V++Y  LI G C  G++DE      V L      S GL PD +TYN L++ +C+
Sbjct: 512 VGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVML------SVGLKPDEWTYNTLLHGYCR 565

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            GR+   + +F  +L +  TP  VT+++++  L
Sbjct: 566 AGRIDDAYGVFREMLRNGITPGVVTYSTILHGL 598



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 150/336 (44%), Gaps = 29/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ M+N     P +  FN L   L     ++     +  +   G+ PD   +N 
Sbjct: 430 DDAVLKFNQMMN-EGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNT 488

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++   C  G+V     ++  + R    PD +++T+LI   C   RI EAA     +   G
Sbjct: 489 ILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVG 548

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CK 248
            + D +TYNTL++G CR G    A  +F EM   NG       P  +TYSTI+ GL   +
Sbjct: 549 LKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLR-NG-----ITPGVVTYSTILHGLFTTR 602

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
               A  L  + + S    N   +                +++GL K + +  A +LFQS
Sbjct: 603 RFSEAKELYLNMITSGKQWNIWIYNI--------------ILNGLSKNNCVDEAFKLFQS 648

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L        + T+NI+I  L   G+ ++  H      LF  ++S GL PD++TY ++   
Sbjct: 649 LCSKDFQLEITTFNIMIGALFKSGRNEDAMH------LFATISSYGLVPDVFTYCLIAEN 702

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             + G +     +F  +  S  TP++    +L++ L
Sbjct: 703 LIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRL 738



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 123/263 (46%), Gaps = 34/263 (12%)

Query: 86  SRPPVTSFNILFG--CLA-----KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           +RP V S+  L G  CL        K  D +LS+       GL PD +TYN L++ +C+ 
Sbjct: 514 TRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSV-------GLKPDEWTYNTLLHGYCRA 566

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           GR+   + V   +LR+  TP  VT+++++  L    R  EA  L+  +   G + +++ Y
Sbjct: 567 GRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIY 626

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG- 257
           N ++NGL +      A  LF+ + + + +  +       T++ +I  L K   + + +  
Sbjct: 627 NIILNGLSKNNCVDEAFKLFQSLCSKDFQLEIT------TFNIMIGALFKSGRNEDAMHL 680

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
           F+ ++S+  +       P V   CL      + + L +   L+   +LF ++ ++G  PN
Sbjct: 681 FATISSYGLV-------PDVFTYCL------IAENLIEEGYLEEFDDLFSAMEKSGTTPN 727

Query: 318 VVTYNILIRGLCNDGQMDETKHY 340
               N L+R L + G +     Y
Sbjct: 728 SRMLNALVRRLLHRGDITRAGAY 750



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 4/110 (3%)

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCN-DGQMDETKHYETVFLLFKRLN---STG 354
           L  A +LF  L       +++ +N L+  +    G+   T   E V  LF R+    +  
Sbjct: 30  LDDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + PDL TY+ILI CFC++GR+  GF  FG IL S +  + +    L+K L
Sbjct: 90  VTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGL 139



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 7/149 (4%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           ++LC  D+ L        +T+FNI+ G L K+   +  + LF  ++  GL PD +TY ++
Sbjct: 647 QSLCSKDFQL-------EITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLI 699

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
                + G +     +   + +S  TP++    +L++ L     I  A A  +KL     
Sbjct: 700 AENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKNF 759

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEE 220
            L+  T   LI+ L R  +   A +L E+
Sbjct: 760 SLEASTTAMLISLLSRDEYHHHATSLPEK 788


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 142/310 (45%), Gaps = 16/310 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     +D    L K +   G  PD  TY+ +I   C   +V   F++   +     TP
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T LI   C    I +A  LF ++R  GC   V TY  LI+   +      A ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 381

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFSALNKMAFYFPLV 277
             M +        C P+ +TY  ++DGLCK    S  F  ++ +   S      FYFP  
Sbjct: 382 HRMVDAG------CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCE 435

Query: 278 RVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
               L  N +    L+DGLCK  K+  A EL  ++  +G  PN + Y+ LI G C  G++
Sbjct: 436 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 495

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           D  +       +F ++   G  P ++TY  LI+   K GR+     +  ++L    TP+ 
Sbjct: 496 DSAQE------VFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 549

Query: 395 VTFTSLIKIL 404
           VT+T++I  L
Sbjct: 550 VTYTAMIDGL 559



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 154/329 (46%), Gaps = 32/329 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  ++++ +   L      +    LF+ + + G+ PD YTY ILI+ FCK G +     +
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 345

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +     +P  VT+T+LI       ++ +A  +F ++   GC  +  TY  L++GLC+
Sbjct: 346 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 405

Query: 208 TGHTIVALNLFEEM----ANGNGEFGVVCE------PDAITYSTIIDGLCK--EAGSANF 255
            G+   A  ++ ++     + + +F   CE      P+ +TY  ++DGLCK  +   A+ 
Sbjct: 406 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 465

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L  + ++S    N + +                LIDG CK  K+  A+E+F  + + G +
Sbjct: 466 LLDAMLSSGCEPNHIVYD--------------ALIDGFCKAGKIDSAQEVFLQMTKCGYL 511

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+V TY  LI  +  DG++D          +  ++      P++ TY  +I+  C+IG  
Sbjct: 512 PSVHTYTSLIDRMFKDGRLD------LAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 565

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                +   +     +P+ VT+T+LI  L
Sbjct: 566 EKALKLLSLMEEKGCSPNVVTYTALIDGL 594



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 144/340 (42%), Gaps = 40/340 (11%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           + M    P V ++ IL     K    +    LF+ +   G  P   TY  LI+ + K  +
Sbjct: 314 MKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQ 373

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR----------VFG 190
           V     +  R++ +   P+ VT+ +L+  LC    I +A  ++ KL            F 
Sbjct: 374 VPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFP 433

Query: 191 CE------LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           CE       +V TY  L++GLC+      A  L + M +        CEP+ I Y  +ID
Sbjct: 434 CEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSG------CEPNHIVYDALID 487

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           G CK AG  +    S    F  + K   Y P V        +  LID + K  +L +A +
Sbjct: 488 GFCK-AGKID----SAQEVFLQMTKCG-YLPSVH------TYTSLIDRMFKDGRLDLAMK 535

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +   + +    PNVVTY  +I GLC  G+       E    L   +   G  P++ TY  
Sbjct: 536 VLSQMLKDSCTPNVVTYTAMIDGLCRIGES------EKALKLLSLMEEKGCSPNVVTYTA 589

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           LI+   K G++     +F ++     +P+ VT+  LI  L
Sbjct: 590 LIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHL 629



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 137/357 (38%), Gaps = 86/357 (24%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   L K    D    L   +  +G  P+   Y+ LI+ FCK G++     V
Sbjct: 442 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 501

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++ +  + P   T+TSLI  +  + R+  A  + +++    C  +V TY  +I+GLCR
Sbjct: 502 FLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 561

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G +  AL L   M          C P+ +TY+ +IDGL K                   
Sbjct: 562 IGESEKALKLLSLMEEKG------CSPNVVTYTALIDGLGKAG----------------- 598

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                         K+ ++ +LF  + R G  PN VTY +LI  
Sbjct: 599 ------------------------------KIDLSLDLFTQMSRKGCSPNYVTYRVLINH 628

Query: 328 LCNDGQMDE---------------------------TKHYETVFLLFKRLNSTGLFPDLY 360
           LC  G +D+                           +K +     + + + S G  P   
Sbjct: 629 LCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAP 688

Query: 361 TYNILINCFCKIGRVSSGFVIFGRIL--PSCFTPDAVTFTSLIKIL----EINSFFR 411
            Y +LI+CF K GR+     +   ++  PS    D   + SLI+ L    ++   FR
Sbjct: 689 VYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFR 745



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 145/347 (41%), Gaps = 50/347 (14%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   ++N L   L+     D    + K ++ +G   DR+T     +  CK GR +    
Sbjct: 37  RPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA-- 94

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L  I R  F  D V  T +I  L   S   EA +   ++R   C  +V TY TL++G  
Sbjct: 95  -LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFL 153

Query: 207 RT---GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN--------- 254
           +    G     +N+   M  G       C P+   +++++   C E   A          
Sbjct: 154 KKKQLGWCKRIINMM--MTEG-------CNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMT 204

Query: 255 -------------FLGFSC----MASFSALN-KMAFYFPLVRVQCLC--LNFLCLIDGLC 294
                        F+G  C    + S   L+     Y  ++   C+   +N       LC
Sbjct: 205 TCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLC 264

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
            + K   A +L + + R G +P+  TY+ +I  LC+  ++      E  FLLF+ +   G
Sbjct: 265 GVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKV------EKAFLLFQEMKMVG 318

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + PD+YTY ILI+ FCK G +     +F  +     +P  VT+T+LI
Sbjct: 319 VTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALI 365



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 144/333 (43%), Gaps = 48/333 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  + D ML+     P    ++ L     K    D+   +F ++   G  P  +TY  
Sbjct: 461 DHAHELLDAMLS-SGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 519

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+   K GR+     VL ++L+   TP+ VT+T++I  LC      +A  L + +   G
Sbjct: 520 LIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 579

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--- 247
           C  +V TY  LI+GL + G   ++L+LF +M+         C P+ +TY  +I+ LC   
Sbjct: 580 CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG------CSPNYVTYRVLINHLCAAG 633

Query: 248 ------------KEAGSANFL-GFSC---------MASFSALNKMAFY--FPLVRVQCLC 283
                       K+     +L G+ C         +AS   L +M  Y   P+  V    
Sbjct: 634 LLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPV---- 689

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPR--AGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             +  LID   K  +L+IA EL + +    + +  +   Y  LI+ LC   Q++E     
Sbjct: 690 --YGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEA---- 743

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
             F L+  +   G  P+L  +  LI    ++ +
Sbjct: 744 --FRLYSEMTRRGFVPELSVFVCLIKGLVEVKK 774



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 122/314 (38%), Gaps = 32/314 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L     K K       +   +   G  P+   +N L++ +C     ++ + +
Sbjct: 140 PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 199

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG------CELDVFTYNTL 201
           L R+      P  V +   I  +C + ++     L    +++G      C L+       
Sbjct: 200 LNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANF 259

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSC 260
              LC  G    A  L +EM       G V  PD  TYS +I  LC        FL F  
Sbjct: 260 ARCLCGVGKFDKAFQLIKEMMRK----GFV--PDTSTYSKVITFLCHATKVEKAFLLFQE 313

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           M       KM    P V        +  LID  CK   ++ A+ LF+ +   G  P VVT
Sbjct: 314 M-------KMVGVTPDV------YTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVT 360

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y  LI       Q+ +         +F R+   G  P+  TY  L++  CK G +S  F 
Sbjct: 361 YTALIHAYLKAKQVPQAND------IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFE 414

Query: 381 IFGRILPSCFTPDA 394
           ++ +++ +  + D+
Sbjct: 415 VYAKLIGTSDSADS 428



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 92/280 (32%), Gaps = 73/280 (26%)

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           L+ FG      TYN L+  L   G   +   + +EM+    E G     D  T       
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMS----ESGFCM--DRFTVGCFAHA 84

Query: 246 LCKEAGSANFLGFS-----------CMASFSALNKMAFYFP----LVRVQC-----LCLN 285
           LCKE   A+ L              C    S L + +++      L R++C       + 
Sbjct: 85  LCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVT 144

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  L+ G  K  +L   + +   +   G  PN   +N L+   CN+      K Y   + 
Sbjct: 145 YRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNE------KDYAYAYK 198

Query: 346 LFKRLNSTGLFPDLYTYNILIN-------------------------------------- 367
           L  R+ + G  P    YNI I                                       
Sbjct: 199 LLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVAN 258

Query: 368 ---CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              C C +G+    F +   ++   F PD  T++ +I  L
Sbjct: 259 FARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFL 298



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 6/119 (5%)

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR--SCFTPDA 160
           +K +   L + + +   G  P    Y +LI+CF K GR+     +   ++   S    D 
Sbjct: 665 SKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDN 724

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKL--RVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
             + SLI+ LC  S++ EA  L++++  R F  EL VF    LI GL        AL L
Sbjct: 725 DMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFV--CLIKGLVEVKKWDEALQL 781



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  P+ VTYN L++ L + GQ+D        F + K ++ +G   D +T     +  CK 
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVD------LGFRVQKEMSESGFCMDRFTVGCFAHALCKE 88

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           GR +    +  R     F  D V  T +I  L   S+F + 
Sbjct: 89  GRWADALDMIER---EDFKLDTVLCTHMISGLMEASYFDEA 126


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 142/310 (45%), Gaps = 16/310 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     +D    L K +   G  PD  TY+ +I   C   +V   F++   +     TP
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T LI   C    I +A  LF ++R  GC   V TY  LI+   +      A ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 381

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFSALNKMAFYFPLV 277
             M +        C P+ +TY  ++DGLCK    S  F  ++ +   S      FYFP  
Sbjct: 382 HRMVDAG------CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCE 435

Query: 278 RVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
               L  N +    L+DGLCK  K+  A EL  ++  +G  PN + Y+ LI G C  G++
Sbjct: 436 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 495

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           D  +       +F ++   G  P ++TY  LI+   K GR+     +  ++L    TP+ 
Sbjct: 496 DSAQE------VFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 549

Query: 395 VTFTSLIKIL 404
           VT+T++I  L
Sbjct: 550 VTYTAMIDGL 559



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 154/329 (46%), Gaps = 32/329 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  ++++ +   L      +    LF+ + + G+ PD YTY ILI+ FCK G +     +
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 345

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +     +P  VT+T+LI       ++ +A  +F ++   GC  +  TY  L++GLC+
Sbjct: 346 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 405

Query: 208 TGHTIVALNLFEEM----ANGNGEFGVVCE------PDAITYSTIIDGLCK--EAGSANF 255
            G+   A  ++ ++     + + +F   CE      P+ +TY  ++DGLCK  +   A+ 
Sbjct: 406 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 465

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L  + ++S    N + +                LIDG CK  K+  A+E+F  + + G +
Sbjct: 466 LLDAMLSSGCEPNHIVYD--------------ALIDGFCKAGKIDSAQEVFLQMTKCGYL 511

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+V TY  LI  +  DG++D          +  ++      P++ TY  +I+  C+IG  
Sbjct: 512 PSVHTYTSLIDRMFKDGRLD------LAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 565

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                +   +     +P+ VT+T+LI  L
Sbjct: 566 EKALKLLSLMEEKGCSPNVVTYTALIDGL 594



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 144/340 (42%), Gaps = 40/340 (11%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           + M    P V ++ IL     K    +    LF+ +   G  P   TY  LI+ + K  +
Sbjct: 314 MKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQ 373

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR----------VFG 190
           V     +  R++ +   P+ VT+ +L+  LC    I +A  ++ KL            F 
Sbjct: 374 VPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFP 433

Query: 191 CE------LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           CE       +V TY  L++GLC+      A  L + M +        CEP+ I Y  +ID
Sbjct: 434 CEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSG------CEPNHIVYDALID 487

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           G CK AG  +    S    F  + K   Y P V        +  LID + K  +L +A +
Sbjct: 488 GFCK-AGKID----SAQEVFLQMTKCG-YLPSVH------TYTSLIDRMFKDGRLDLAMK 535

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +   + +    PNVVTY  +I GLC  G+       E    L   +   G  P++ TY  
Sbjct: 536 VLSQMLKDSCTPNVVTYTAMIDGLCRIGES------EKALKLLSLMEEKGCSPNVVTYTA 589

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           LI+   K G++     +F ++     +P+ VT+  LI  L
Sbjct: 590 LIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHL 629



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 137/357 (38%), Gaps = 86/357 (24%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   L K    D    L   +  +G  P+   Y+ LI+ FCK G++     V
Sbjct: 442 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 501

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++ +  + P   T+TSLI  +  + R+  A  + +++    C  +V TY  +I+GLCR
Sbjct: 502 FLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 561

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G +  AL L   M          C P+ +TY+ +IDGL K                   
Sbjct: 562 IGESEKALKLLSLMEEKG------CSPNVVTYTALIDGLGKAG----------------- 598

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                         K+ ++ +LF  + R G  PN VTY +LI  
Sbjct: 599 ------------------------------KIDLSLDLFTQMSRKGCSPNYVTYRVLINH 628

Query: 328 LCNDGQMDE---------------------------TKHYETVFLLFKRLNSTGLFPDLY 360
           LC  G +D+                           +K +     + + + S G  P   
Sbjct: 629 LCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAP 688

Query: 361 TYNILINCFCKIGRVSSGFVIFGRIL--PSCFTPDAVTFTSLIKIL----EINSFFR 411
            Y +LI+CF K GR+     +   ++  PS    D   + SLI+ L    ++   FR
Sbjct: 689 VYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFR 745



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 141/344 (40%), Gaps = 44/344 (12%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   ++N L   L+     D    + K ++ +G   DR+T     +  CK GR +    
Sbjct: 37  RPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA-- 94

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L  I R  F  D V  T +I  L   S   EA +   ++R   C  +V TY TL++G  
Sbjct: 95  -LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFL 153

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN------------ 254
           +         +   M          C P+   +++++   C E   A             
Sbjct: 154 KKKQLGWCKRIINMMMTEG------CNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCG 207

Query: 255 ----------FLGFSC----MASFSALN-KMAFYFPLVRVQCLC--LNFLCLIDGLCKIS 297
                     F+G  C    + S   L+     Y  ++   C+   +N       LC + 
Sbjct: 208 CPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVG 267

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           K   A +L + + R G +P+  TY+ +I  LC+  ++      E  FLLF+ +   G+ P
Sbjct: 268 KFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKV------EKAFLLFQEMKMVGVTP 321

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           D+YTY ILI+ FCK G +     +F  +     +P  VT+T+LI
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALI 365



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 144/333 (43%), Gaps = 48/333 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  + D ML+     P    ++ L     K    D+   +F ++   G  P  +TY  
Sbjct: 461 DHAHELLDAMLS-SGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 519

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+   K GR+     VL ++L+   TP+ VT+T++I  LC      +A  L + +   G
Sbjct: 520 LIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 579

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--- 247
           C  +V TY  LI+GL + G   ++L+LF +M+         C P+ +TY  +I+ LC   
Sbjct: 580 CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG------CSPNYVTYRVLINHLCAAG 633

Query: 248 ------------KEAGSANFL-GFSC---------MASFSALNKMAFY--FPLVRVQCLC 283
                       K+     +L G+ C         +AS   L +M  Y   P+  V    
Sbjct: 634 LLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPV---- 689

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPR--AGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             +  LID   K  +L+IA EL + +    + +  +   Y  LI+ LC   Q++E     
Sbjct: 690 --YGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEA---- 743

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
             F L+  +   G  P+L  +  LI    ++ +
Sbjct: 744 --FRLYSEMTRRGFVPELSVFVCLIKGLVEVKK 774



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 122/314 (38%), Gaps = 32/314 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L     K K       +   +   G  P+   +N L++ +C     ++ + +
Sbjct: 140 PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 199

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG------CELDVFTYNTL 201
           L R+      P  V +   I  +C + ++     L    +++G      C L+       
Sbjct: 200 LNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANF 259

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSC 260
              LC  G    A  L +EM       G V  PD  TYS +I  LC        FL F  
Sbjct: 260 ARCLCGVGKFDKAFQLIKEMMRK----GFV--PDTSTYSKVITFLCHATKVEKAFLLFQE 313

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           M       KM    P V        +  LID  CK   ++ A+ LF+ +   G  P VVT
Sbjct: 314 M-------KMVGVTPDV------YTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVT 360

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y  LI       Q+ +         +F R+   G  P+  TY  L++  CK G +S  F 
Sbjct: 361 YTALIHAYLKAKQVPQAND------IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFE 414

Query: 381 IFGRILPSCFTPDA 394
           ++ +++ +  + D+
Sbjct: 415 VYAKLIGTSDSADS 428



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 92/280 (32%), Gaps = 73/280 (26%)

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           L+ FG      TYN L+  L   G   +   + +EM+    E G     D  T       
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMS----ESGFCM--DRFTVGCFAHA 84

Query: 246 LCKEAGSANFLGFS-----------CMASFSALNKMAFYFP----LVRVQC-----LCLN 285
           LCKE   A+ L              C    S L + +++      L R++C       + 
Sbjct: 85  LCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVT 144

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  L+ G  K  +L   + +   +   G  PN   +N L+   CN+      K Y   + 
Sbjct: 145 YRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNE------KDYAYAYK 198

Query: 346 LFKRLNSTGLFPDLYTYNILIN-------------------------------------- 367
           L  R+ + G  P    YNI I                                       
Sbjct: 199 LLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVAN 258

Query: 368 ---CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              C C +G+    F +   ++   F PD  T++ +I  L
Sbjct: 259 FARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFL 298



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 6/119 (5%)

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR--SCFTPDA 160
           +K +   L + + +   G  P    Y +LI+CF K GR+     +   ++   S    D 
Sbjct: 665 SKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDN 724

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKL--RVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
             + SLI+ LC  S++ EA  L++++  R F  EL VF    LI GL        AL L
Sbjct: 725 DMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFV--CLIKGLVEVKKWDEALQL 781



 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 9/101 (8%)

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  P+ VTYN L++ L + GQ+D        F + K ++ +G   D +T     +  CK 
Sbjct: 35  GYRPSKVTYNALVQVLSSAGQVD------LGFRVQKEMSESGFCMDRFTVGCFAHALCKE 88

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           GR +    +  R     F  D V  T +I  L   S+F + 
Sbjct: 89  GRWADALDMIER---EDFKLDTVLCTHMISGLMEASYFDEA 126


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 142/310 (45%), Gaps = 16/310 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     +D    L K +   G  PD  TY+ +I   C   +V   F++   +     TP
Sbjct: 431 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 490

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T LI   C    I +A  LF ++R  GC   V TY  LI+   +      A ++F
Sbjct: 491 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 550

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFSALNKMAFYFPLV 277
             M +        C P+ +TY  ++DGLCK    S  F  ++ +   S      FYFP  
Sbjct: 551 HRMVDAG------CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCE 604

Query: 278 RVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
               L  N +    L+DGLCK  K+  A EL  ++  +G  PN + Y+ LI G C  G++
Sbjct: 605 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 664

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           D  +       +F ++   G  P ++TY  LI+   K GR+     +  ++L    TP+ 
Sbjct: 665 DSAQE------VFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 718

Query: 395 VTFTSLIKIL 404
           VT+T++I  L
Sbjct: 719 VTYTAMIDGL 728



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 154/329 (46%), Gaps = 32/329 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  ++++ +   L      +    LF+ + + G+ PD YTY ILI+ FCK G +     +
Sbjct: 455 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 514

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +     +P  VT+T+LI       ++ +A  +F ++   GC  +  TY  L++GLC+
Sbjct: 515 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 574

Query: 208 TGHTIVALNLFEEM----ANGNGEFGVVCE------PDAITYSTIIDGLCK--EAGSANF 255
            G+   A  ++ ++     + + +F   CE      P+ +TY  ++DGLCK  +   A+ 
Sbjct: 575 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 634

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L  + ++S    N + +                LIDG CK  K+  A+E+F  + + G +
Sbjct: 635 LLDAMLSSGCEPNHIVYD--------------ALIDGFCKAGKIDSAQEVFLQMTKCGYL 680

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+V TY  LI  +  DG++D          +  ++      P++ TY  +I+  C+IG  
Sbjct: 681 PSVHTYTSLIDRMFKDGRLD------LAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 734

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                +   +     +P+ VT+T+LI  L
Sbjct: 735 EKALKLLSLMEEKGCSPNVVTYTALIDGL 763



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 145/347 (41%), Gaps = 50/347 (14%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   ++N L   L+     D    + K ++ +G   DR+T     +  CK GR +    
Sbjct: 206 RPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA-- 263

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L  I R  F  D V  T +I  L   S   EA +   ++R   C  +V TY TL++G  
Sbjct: 264 -LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFL 322

Query: 207 RT---GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN--------- 254
           +    G     +N+   M  G       C P+   +++++   C E   A          
Sbjct: 323 KKKQLGWCKRIINMM--MTEG-------CNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMT 373

Query: 255 -------------FLGFSC----MASFSALN-KMAFYFPLVRVQCLC--LNFLCLIDGLC 294
                        F+G  C    + S   L+     Y  ++   C+   +N       LC
Sbjct: 374 TCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLC 433

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
            + K   A +L + + R G +P+  TY+ +I  LC+  ++      E  FLLF+ +   G
Sbjct: 434 GVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKV------EKAFLLFQEMKMVG 487

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + PD+YTY ILI+ FCK G +     +F  +     +P  VT+T+LI
Sbjct: 488 VTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALI 534



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 124/281 (44%), Gaps = 39/281 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  +F+ M ++  S P V ++  L     K K       +F R+   G  P+  TY  
Sbjct: 509 EQAQWLFEEMRSVGCS-PTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGA 567

Query: 131 LINCFCKMGRVSHGFVVLGRIL----------------RSCFTPDAVTFTSLIKDLCAES 174
           L++  CK G +S  F V  +++                R    P+ VT+ +L+  LC   
Sbjct: 568 LVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAH 627

Query: 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234
           ++  A  L   +   GCE +   Y+ LI+G C+ G    A  +F +M     + G +  P
Sbjct: 628 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMT----KCGYL--P 681

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDG 292
              TY+++ID + K+ G  +        +   L++M      ++  C    + +  +IDG
Sbjct: 682 SVHTYTSLIDRMFKD-GRLDL-------AMKVLSQM------LKDSCTPNVVTYTAMIDG 727

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
           LC+I + + A +L   +   G  PNVVTY  LI GL    Q
Sbjct: 728 LCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQSWQ 768



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 122/314 (38%), Gaps = 32/314 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L     K K       +   +   G  P+   +N L++ +C     ++ + +
Sbjct: 309 PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 368

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG------CELDVFTYNTL 201
           L R+      P  V +   I  +C + ++     L    +++G      C L+       
Sbjct: 369 LNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANF 428

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSC 260
              LC  G    A  L +EM       G V  PD  TYS +I  LC        FL F  
Sbjct: 429 ARCLCGVGKFDKAFQLIKEMMRK----GFV--PDTSTYSKVITFLCHATKVEKAFLLFQE 482

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           M       KM    P V        +  LID  CK   ++ A+ LF+ +   G  P VVT
Sbjct: 483 M-------KMVGVTPDV------YTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVT 529

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y  LI       Q+ +         +F R+   G  P+  TY  L++  CK G +S  F 
Sbjct: 530 YTALIHAYLKAKQVPQAND------IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFE 583

Query: 381 IFGRILPSCFTPDA 394
           ++ +++ +  + D+
Sbjct: 584 VYAKLIGTSDSADS 597



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/312 (20%), Positives = 112/312 (35%), Gaps = 21/312 (6%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
            N+L     +   ++  L    RL   G  P + TYN L+      G+V  GF V   + 
Sbjct: 177 LNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMS 236

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S F  D  T       LC E R  +A  +  +      +LD      +I+GL    +  
Sbjct: 237 ESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDF---KLDTVLCTHMISGLMEASYFD 293

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A++    M   +      C P+ +TY T++ G  K+      LG+        + +   
Sbjct: 294 EAMSFLHRMRCNS------CIPNVVTYRTLLSGFLKK----KQLGWCKRIINMMMTEGCN 343

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
             P +        F  L+   C       A +L   +   G  P  V YNI I  +C   
Sbjct: 344 PNPSL--------FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQE 395

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           ++      +    ++  + +     +         C C +G+    F +   ++   F P
Sbjct: 396 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP 455

Query: 393 DAVTFTSLIKIL 404
           D  T++ +I  L
Sbjct: 456 DTSTYSKVITFL 467


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 166/364 (45%), Gaps = 58/364 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD M + R   P + SF+ L G LA+  H    L  F+ +  +G+ PD   Y IL
Sbjct: 380 EAQEIFDEM-SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTIL 438

Query: 132 INCFCKMGRVSHGFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           I+ FC+ G +S    +   +L R CF  D VT+ + +  LC +    +A  LF ++   G
Sbjct: 439 IDGFCRNGALSDALKMRDEMLARGCFM-DVVTYNTFLNGLCKKKMFADADMLFNEMVERG 497

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
              D +T+ TLI G C+ G+   ALNLFE M   N       +PD +TY+T+IDG CK  
Sbjct: 498 MVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTN------LKPDKVTYNTLIDGFCKAG 551

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELF 306
           E G A  L                +  ++R   +   +++  +++G C    L  A  L 
Sbjct: 552 EMGRAKEL----------------WDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLC 595

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY-------------------------- 340
             +   G+ PN+VT N LI+G C  G M +   Y                          
Sbjct: 596 DQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKE 655

Query: 341 ---ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
              E  F+L   +   GL  ++ TYN+++N FC  G++     +  +++     PD  T+
Sbjct: 656 ANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATY 715

Query: 398 TSLI 401
           +SLI
Sbjct: 716 SSLI 719



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 155/347 (44%), Gaps = 59/347 (17%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V + NI+   L K + ++ V+     +   G+F D  TYN LIN +C+ G V   F +L 
Sbjct: 257 VYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLN 316

Query: 150 -----------------------------------RILRSCFTPDAVTFTSLIKDLCAES 174
                                               +L+   TP+A T+ +L+ ++C   
Sbjct: 317 SFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRD 376

Query: 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234
            I+EA  +F ++   G   D+ ++++LI  L R GH   AL  F EM       G+V  P
Sbjct: 377 NILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERS----GIV--P 430

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           D + Y+ +IDG C+    ++ L           ++M      + V    + +   ++GLC
Sbjct: 431 DNVIYTILIDGFCRNGALSDALKMR--------DEMLARGCFMDV----VTYNTFLNGLC 478

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K      A  LF  +   G++P+  T+  LIRG C DG MD+  +      LF+ +  T 
Sbjct: 479 KKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALN------LFEAMVRTN 532

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L PD  TYN LI+ FCK G +     ++  ++     PD +++ +++
Sbjct: 533 LKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVL 579



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 148/314 (47%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   + +  +      +F  ++  G+ PD  +++ LI    + G +    + 
Sbjct: 360 PNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMH 419

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + RS   PD V +T LI   C    + +A  +  ++   GC +DV TYNT +NGLC+
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCK 479

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A  LF EM     E G+V  PD  T++T+I G CK+      L       F A+
Sbjct: 480 KKMFADADMLFNEMV----ERGMV--PDFYTFTTLIRGYCKDGNMDKALNL-----FEAM 528

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +         ++   + +  LIDG CK  ++  A+EL+  + R  ++P+ ++Y  ++ G
Sbjct: 529 VR-------TNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNG 581

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C+ G + E  +      L  ++   G+ P+L T N LI  +C+ G +   +    +++ 
Sbjct: 582 FCSSGLLPEALN------LCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMIS 635

Query: 388 SCFTPDAVTFTSLI 401
           +   PD+ ++ +LI
Sbjct: 636 NGIIPDSFSYNTLI 649



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 141/322 (43%), Gaps = 30/322 (9%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P + ++N +   L K   YD    +   +   GL P+  TYN L+   C+   +  
Sbjct: 321 RGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILE 380

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   + R    PD V+F+SLI  L     + +A   F ++   G   D   Y  LI+
Sbjct: 381 AQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILID 440

Query: 204 GLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSC 260
           G CR G    AL + +EM A G       C  D +TY+T ++GLCK+     A+ L F+ 
Sbjct: 441 GFCRNGALSDALKMRDEMLARG-------CFMDVVTYNTFLNGLCKKKMFADADML-FNE 492

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           M     +    FY            F  LI G CK   +  A  LF+++ R  L P+ VT
Sbjct: 493 MVERGMVPD--FY-----------TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVT 539

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN LI G C  G+M   K       L+  +    + PD  +Y  ++N FC  G +     
Sbjct: 540 YNTLIDGFCKAGEMGRAKE------LWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593

Query: 381 IFGRILPSCFTPDAVTFTSLIK 402
           +  ++L     P+ VT  +LIK
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIK 615



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 146/335 (43%), Gaps = 35/335 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + + N L G L +T   D    ++  +   G+  + YT NI++N  CK  +  +    L 
Sbjct: 222 INACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLS 281

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +       D VT+ +LI   C E  + EA  L       G E  + TYN ++ GLC+ G
Sbjct: 282 DMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIG 341

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-----EAGS-----------A 253
               A ++  EM     + G+   P+A TY+T++  +C+     EA              
Sbjct: 342 KYDRAKDVLIEML----QLGLT--PNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLP 395

Query: 254 NFLGFSCMASFSALN-----KMAFYFPLVRVQCLCLN--FLCLIDGLCKISKLKIARELF 306
           + + FS +    A N      +  +  + R   +  N  +  LIDG C+   L  A ++ 
Sbjct: 396 DLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMR 455

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G   +VVTYN  + GLC      + K +    +LF  +   G+ PD YT+  LI
Sbjct: 456 DEMLARGCFMDVVTYNTFLNGLC------KKKMFADADMLFNEMVERGMVPDFYTFTTLI 509

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +CK G +     +F  ++ +   PD VT+ +LI
Sbjct: 510 RGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLI 544



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 118/269 (43%), Gaps = 26/269 (9%)

Query: 147 VLGRILRSCFTPDAV--TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           V+  ++ +CF   +V   +  L++      ++ E +  F  LR  G  + +   N L+ G
Sbjct: 172 VVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGG 231

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           L RTG   +A  ++ E+  G  E  V       T + +++ LCK+    N + F      
Sbjct: 232 LVRTGWVDLAWEIYGEVVRGGIELNVY------TLNIMVNALCKDRKFENVMFF-----L 280

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           S +     +  +V        +  LI+  C+   ++ A +L  S    G+ P ++TYN +
Sbjct: 281 SDMEGKGVFADIV-------TYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAI 333

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + GLC  G+ D  K      +L + L   GL P+  TYN L+   C+   +     IF  
Sbjct: 334 LYGLCKIGKYDRAKD-----VLIEML-QLGLTPNAATYNTLLVEICRRDNILEAQEIFDE 387

Query: 385 ILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           +      PD V+F+SLI +L  N    Q 
Sbjct: 388 MSRRGVLPDLVSFSSLIGVLARNGHLYQA 416



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 120/322 (37%), Gaps = 95/322 (29%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +F+ M+  R   P   +F  L     K  + D  L+LF+ +  T L PD+ TYN L
Sbjct: 485 DADMLFNEMVE-RGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTL 543

Query: 132 INCFCK---MGR-----------------VSHGFVVLG---------------RILRSCF 156
           I+ FCK   MGR                 +S+G V+ G               ++L    
Sbjct: 544 IDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGI 603

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
            P+ VT  +LIK  C    + +A    +K+   G   D F+YNTLI+G  +  +   A  
Sbjct: 604 RPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFI 663

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           L  EM     +F +      ITY+ I++G C E                           
Sbjct: 664 LINEMEKRGLQFNI------ITYNLILNGFCAEG-------------------------- 691

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
                                K++ A ++ + +   G+ P+  TY+ LI G  +   M E
Sbjct: 692 ---------------------KMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKE 730

Query: 337 TKHYETVFLLFKRLNSTGLFPD 358
                  F     +   GL PD
Sbjct: 731 A------FRFHDEMLQRGLVPD 746


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 161/350 (46%), Gaps = 37/350 (10%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           V+ +M+     +P   S++IL   LAK    D  L +   + + G  P    Y+ L+   
Sbjct: 67  VYQHMVE-SGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRAL 125

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            K  RV H   +   ++R    PD + F  LI  LC   ++ +A+  F ++   GC+ +V
Sbjct: 126 AKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNV 185

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAG 251
             YN L++GLC +G    A  LF EM + +      C PD +TY+T++D +CK    E G
Sbjct: 186 PVYNVLLHGLCSSGQLEQANTLFAEMKSHS------CSPDVVTYNTLLDAVCKARRVEEG 239

Query: 252 SANFLGFSCMA------SFSAL-----------NKMAFYFPLVRVQCL--CLNFLCLIDG 292
              F             +FS L             +  +  ++   C      +  LI G
Sbjct: 240 CKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISG 299

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN- 351
           LC+  K+  ARELF+ + +A + P+ V YN LI G C  G MDE +       L++ ++ 
Sbjct: 300 LCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEK------LYREMSG 353

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             GL P + T+N LI+ FCK+G++     +   +       D+ T+  LI
Sbjct: 354 GAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILI 403



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 145/321 (45%), Gaps = 27/321 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N+L   L  +   +   +LF  +      PD  TYN L++  CK  RV  G  
Sbjct: 182 QPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCK 241

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +  + + P+ +TF++LI  LC    + +A  +F  +   GC+ + +TY TLI+GLC
Sbjct: 242 LFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLC 301

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R    I A  LFE+M            PDA+ Y+++I G CK  GS +         +  
Sbjct: 302 RAEKVIQARELFEKMTQ------ACIPPDAVAYNSLIAGYCKR-GSMD----EAEKLYRE 350

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           ++  A   P +      + F  LIDG CK+ KL  A EL   +   GL  +  TY ILI 
Sbjct: 351 MSGGAGLQPTI------VTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIA 404

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL    ++DE         ++K++       D  +    +   CK G +   + +F    
Sbjct: 405 GLSRATKLDE------ALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATR 458

Query: 387 PSCFTPDAVTF----TSLIKI 403
            S   P+  TF     SLIK+
Sbjct: 459 KSGAVPNPETFRILSESLIKL 479



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 128/274 (46%), Gaps = 28/274 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L   + K +  +    LF+ +   G  P+  T++ LI+  C+ G +     V
Sbjct: 218 PDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEV 277

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            G +L +   P+  T+T+LI  LC   ++++A  LF K+       D   YN+LI G C+
Sbjct: 278 FGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCK 337

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK------------EAGSANF 255
            G    A  L+ EM+ G G      +P  +T++T+IDG CK            E G+   
Sbjct: 338 RGSMDEAEKLYREMSGGAG-----LQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGL 392

Query: 256 LGFSC--------MASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARE 304
              SC        ++  + L++    +  +R +   L+    +  + GLCK   +  A  
Sbjct: 393 AADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYA 452

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           +F++  ++G +PN  T+ IL   L   G++++ +
Sbjct: 453 VFEATRKSGAVPNPETFRILSESLIKLGRVEDAQ 486



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 149/343 (43%), Gaps = 51/343 (14%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +++ +   L K    +    + + +   G  PD + +N ++  F +   +     V  
Sbjct: 10  VFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQ 69

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++ S + PD V++  LI  L    ++ E+  + +++ + G    +  Y++L+  L +  
Sbjct: 70  HMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKAR 129

Query: 210 HTIVALNLFEEMANGNG---------------EFGVV--------------CEPDAITYS 240
               A +LF+EM  G                 + G V              C+P+   Y+
Sbjct: 130 RVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYN 189

Query: 241 TIIDGLCKEAG--SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
            ++ GLC       AN L F+ M S S    +  Y               L+D +CK  +
Sbjct: 190 VLLHGLCSSGQLEQANTL-FAEMKSHSCSPDVVTYN-------------TLLDAVCKARR 235

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           ++   +LF+++  AG +PNV+T++ LI GLC  G++      E    +F  +   G  P+
Sbjct: 236 VEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGEL------EKALEVFGSMLEAGCKPN 289

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            YTY  LI+  C+  +V     +F ++  +C  PDAV + SLI
Sbjct: 290 KYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLI 332



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 29/185 (15%)

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCK 295
           TYS+II  L KEA            S+  L +M  A   P V        F  ++ G  +
Sbjct: 12  TYSSIIKSLVKEAKPEE--------SYKVLEEMMAAGCNPDV------FAFNGVMQGFAR 57

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
            + ++ ARE++Q +  +G  P+ V+Y+ILI GL   G++DE+        +   +   G 
Sbjct: 58  SNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDES------LKILSEMVMRGQ 111

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINS 408
            P +  Y+ L+    K  RV     +F  ++     PD + F  LI       K+ + + 
Sbjct: 112 TPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASE 171

Query: 409 FFRQV 413
            F+Q+
Sbjct: 172 RFKQM 176



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 56/149 (37%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  ++  M      +P + +FN L     K         L   +   GL  D  TY I
Sbjct: 342 DEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRI 401

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI    +  ++     V  ++    F  D V+  S +  LC    I +A A+F   R  G
Sbjct: 402 LIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSG 461

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFE 219
              +  T+  L   L + G    A  L E
Sbjct: 462 AVPNPETFRILSESLIKLGRVEDAQKLME 490


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 166/364 (45%), Gaps = 58/364 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD M + R   P + SF+ L G LA+  H    L  F+ +  +G+ PD   Y IL
Sbjct: 380 EAQEIFDEM-SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTIL 438

Query: 132 INCFCKMGRVSHGFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           I+ FC+ G +S    +   +L R CF  D VT+ + +  LC +    +A  LF ++   G
Sbjct: 439 IDGFCRNGALSDALKMRDEMLARGCFM-DVVTYNTFLNGLCKKKMFADADMLFNEMVERG 497

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
              D +T+ TLI G C+ G+   ALNLFE M   N       +PD +TY+T+IDG CK  
Sbjct: 498 MVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTN------LKPDKVTYNTLIDGFCKAG 551

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELF 306
           E G A  L                +  ++R   +   +++  +++G C    L  A  L 
Sbjct: 552 EMGRAKEL----------------WDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLC 595

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY-------------------------- 340
             +   G+ PN+VT N LI+G C  G M +   Y                          
Sbjct: 596 DQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKE 655

Query: 341 ---ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
              E  F+L   +   GL  ++ TYN+++N FC  G++     +  +++     PD  T+
Sbjct: 656 ANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATY 715

Query: 398 TSLI 401
           +SLI
Sbjct: 716 SSLI 719



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 155/347 (44%), Gaps = 59/347 (17%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V + NI+   L K + ++ V+     +   G+F D  TYN LIN +C+ G V   F +L 
Sbjct: 257 VYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLN 316

Query: 150 -----------------------------------RILRSCFTPDAVTFTSLIKDLCAES 174
                                               +L+   TP+A T+ +L+ ++C   
Sbjct: 317 SFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRD 376

Query: 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234
            I+EA  +F ++   G   D+ ++++LI  L R GH   AL  F EM       G+V  P
Sbjct: 377 NILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERS----GIV--P 430

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           D + Y+ +IDG C+    ++ L           ++M      + V    + +   ++GLC
Sbjct: 431 DNVIYTILIDGFCRNGALSDALKMR--------DEMLARGCFMDV----VTYNTFLNGLC 478

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K      A  LF  +   G++P+  T+  LIRG C DG MD+  +      LF+ +  T 
Sbjct: 479 KKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALN------LFEAMVRTN 532

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L PD  TYN LI+ FCK G +     ++  ++     PD +++ +++
Sbjct: 533 LKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVL 579



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 148/314 (47%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   + +  +      +F  ++  G+ PD  +++ LI    + G +    + 
Sbjct: 360 PNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMH 419

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + RS   PD V +T LI   C    + +A  +  ++   GC +DV TYNT +NGLC+
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCK 479

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A  LF EM     E G+V  PD  T++T+I G CK+      L       F A+
Sbjct: 480 KKMFADADMLFNEMV----ERGMV--PDFYTFTTLIRGYCKDGNMDKALNL-----FEAM 528

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +         ++   + +  LIDG CK  ++  A+EL+  + R  ++P+ ++Y  ++ G
Sbjct: 529 VR-------TNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNG 581

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C+ G + E  +      L  ++   G+ P+L T N LI  +C+ G +   +    +++ 
Sbjct: 582 FCSSGLLPEALN------LCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMIS 635

Query: 388 SCFTPDAVTFTSLI 401
           +   PD+ ++ +LI
Sbjct: 636 NGIIPDSFSYNTLI 649



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 141/322 (43%), Gaps = 30/322 (9%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P + ++N +   L K   YD    +   +   GL P+  TYN L+   C+   +  
Sbjct: 321 RGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILE 380

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   + R    PD V+F+SLI  L     + +A   F ++   G   D   Y  LI+
Sbjct: 381 AQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILID 440

Query: 204 GLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSC 260
           G CR G    AL + +EM A G       C  D +TY+T ++GLCK+     A+ L F+ 
Sbjct: 441 GFCRNGALSDALKMRDEMLARG-------CFMDVVTYNTFLNGLCKKKMFADADML-FNE 492

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           M     +    FY            F  LI G CK   +  A  LF+++ R  L P+ VT
Sbjct: 493 MVERGMVPD--FY-----------TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVT 539

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN LI G C  G+M   K       L+  +    + PD  +Y  ++N FC  G +     
Sbjct: 540 YNTLIDGFCKAGEMGRAKE------LWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593

Query: 381 IFGRILPSCFTPDAVTFTSLIK 402
           +  ++L     P+ VT  +LIK
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIK 615



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 146/335 (43%), Gaps = 35/335 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + + N L G L +T   D    ++  +   G+  + YT NI++N  CK  +  +    L 
Sbjct: 222 INACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLS 281

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +       D VT+ +LI   C E  + EA  L       G E  + TYN ++ GLC+ G
Sbjct: 282 DMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIG 341

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-----EAGS-----------A 253
               A ++  EM     + G+   P+A TY+T++  +C+     EA              
Sbjct: 342 KYDRAKDVLIEML----QLGLT--PNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLP 395

Query: 254 NFLGFSCMASFSALN-----KMAFYFPLVRVQCLCLN--FLCLIDGLCKISKLKIARELF 306
           + + FS +    A N      +  +  + R   +  N  +  LIDG C+   L  A ++ 
Sbjct: 396 DLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMR 455

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G   +VVTYN  + GLC      + K +    +LF  +   G+ PD YT+  LI
Sbjct: 456 DEMLARGCFMDVVTYNTFLNGLC------KKKMFADADMLFNEMVERGMVPDFYTFTTLI 509

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +CK G +     +F  ++ +   PD VT+ +LI
Sbjct: 510 RGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLI 544



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 118/269 (43%), Gaps = 26/269 (9%)

Query: 147 VLGRILRSCFTPDAV--TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           V+  ++ +CF   +V   +  L++      ++ E +  F  LR  G  + +   N L+ G
Sbjct: 172 VVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGG 231

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           L RTG   +A  ++ E+  G  E  V       T + +++ LCK+    N + F      
Sbjct: 232 LVRTGWVDLAWEIYGEVVRGGIELNVY------TLNIMVNALCKDRKFENVMFF-----L 280

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           S +     +  +V        +  LI+  C+   ++ A +L  S    G+ P ++TYN +
Sbjct: 281 SDMEGKGVFADIV-------TYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAI 333

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + GLC  G+ D  K      +L + L   GL P+  TYN L+   C+   +     IF  
Sbjct: 334 LYGLCKIGKYDRAKD-----VLIEML-QLGLTPNAATYNTLLVEICRRDNILEAQEIFDE 387

Query: 385 ILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           +      PD V+F+SLI +L  N    Q 
Sbjct: 388 MSRRGVLPDLVSFSSLIGVLARNGHLYQA 416



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 120/322 (37%), Gaps = 95/322 (29%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +F+ M+  R   P   +F  L     K  + D  L+LF+ +  T L PD+ TYN L
Sbjct: 485 DADMLFNEMVE-RGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTL 543

Query: 132 INCFCK---MGR-----------------VSHGFVVLG---------------RILRSCF 156
           I+ FCK   MGR                 +S+G V+ G               ++L    
Sbjct: 544 IDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGI 603

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
            P+ VT  +LIK  C    + +A    +K+   G   D F+YNTLI+G  +  +   A  
Sbjct: 604 RPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFI 663

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           L  EM     +F +      ITY+ I++G C E                           
Sbjct: 664 LINEMEKRGLQFNI------ITYNLILNGFCAEG-------------------------- 691

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
                                K++ A ++ + +   G+ P+  TY+ LI G  +   M E
Sbjct: 692 ---------------------KMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKE 730

Query: 337 TKHYETVFLLFKRLNSTGLFPD 358
                  F     +   GL PD
Sbjct: 731 A------FRFHDEMLQRGLVPD 746


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 158/317 (49%), Gaps = 33/317 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N+L G   K+   D  L + +R+++    PD  TYN ++   C  G++     V
Sbjct: 175 PDVITYNVLIGGYCKSGEIDKALQVLERMSVA---PDVVTYNTILRSLCDSGKLKEAMEV 231

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L R + R C+ PD +T+T LI+  C +S + +A  L  ++R  GC+ DV TYN LING+C
Sbjct: 232 LDRQMQRECY-PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC 290

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A+     M      +G  C+P+ IT++ I+  +C              ++   
Sbjct: 291 KEGRLDEAIKFLNNMP----LYG--CQPNVITHNIILRSMC--------------STGRW 330

Query: 267 LNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           ++       ++R  C    + F  LI+ LC+   L  A ++ + +P+ G MPN ++YN L
Sbjct: 331 MDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPL 390

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + G C + +MD    Y  + +      S G +PD+ TYN L+   CK G+  +   I  +
Sbjct: 391 LHGFCQEKKMDRAIEYLEIMV------SRGCYPDIVTYNTLLTALCKDGKADAAVEILNQ 444

Query: 385 ILPSCFTPDAVTFTSLI 401
           +     +P  +T+ ++I
Sbjct: 445 LSSKGCSPVLITYNTVI 461



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 152/355 (42%), Gaps = 36/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ V D  +  R   P V ++ IL             + L   +   G  PD  TYN+
Sbjct: 226 KEAMEVLDRQMQ-RECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNV 284

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK GR+      L  +      P+ +T   +++ +C+  R M+A  L   +   G
Sbjct: 285 LINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKG 344

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   V T+N LIN LCR      A+++ E+M          C P++++Y+ ++ G C+E 
Sbjct: 345 CSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHG------CMPNSLSYNPLLHGFCQEK 398

Query: 251 GSANFLGF-SCMASFSALNKMAFYFPLVRVQC----------------------LCLNFL 287
                + +   M S      +  Y  L+   C                      + + + 
Sbjct: 399 KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYN 458

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            +IDGL K+ K + A EL + + R GL P+++TY+ L+RGL  +G++DE         +F
Sbjct: 459 TVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDE------AIKIF 512

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             +    + P   TYN ++   CK  + S        ++     P   T+T LI+
Sbjct: 513 HDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIE 567



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 124/283 (43%), Gaps = 31/283 (10%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           + +  NI +    + G +  G   L R++     PD +  TSLI+  C   +  +A  + 
Sbjct: 106 EEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIM 165

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
             L   G   DV TYN LI G C++G    AL + E M+           PD +TY+TI+
Sbjct: 166 EILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMS---------VAPDVVTYNTIL 216

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKI 301
             LC               +   L++      +P V      + +  LI+  C  S +  
Sbjct: 217 RSLCDSG--------KLKEAMEVLDRQMQRECYPDV------ITYTILIEATCNDSGVGQ 262

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A +L   + + G  P+VVTYN+LI G+C +G++DE   +     L+      G  P++ T
Sbjct: 263 AMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLY------GCQPNVIT 316

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +NI++   C  GR      +   +L    +P  VTF  LI  L
Sbjct: 317 HNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFL 359



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 20/244 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FNIL   L + +     + + +++   G  P+  +YN L++ FC+  ++      
Sbjct: 347 PSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEY 406

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  ++ R C+ PD VT+ +L+  LC + +   A  +  +L   GC   + TYNT+I+GL 
Sbjct: 407 LEIMVSRGCY-PDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLT 465

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G T  A  L EEM           +PD ITYST++ GL             C      
Sbjct: 466 KVGKTEYAAELLEEMRRKG------LKPDIITYSTLLRGL------------GCEGKVDE 507

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             K+      + ++   + +  ++ GLCK  +   A +    +   G  P   TY ILI 
Sbjct: 508 AIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIE 567

Query: 327 GLCN 330
           G+ +
Sbjct: 568 GIAD 571


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 167/370 (45%), Gaps = 41/370 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL VFD ML+ R   P V +++IL     K   Y   + L   +   G  PD  TYN+L
Sbjct: 178 DALAVFDDMLH-RGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVL 236

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  C  G V     VL  +      PDAVT+T ++K LC+  R  EA  L TK+    C
Sbjct: 237 INAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDC 296

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D  T+N +I  LC+ G    A  +  +M+    E G  C PD ITYS+I+DGLCKE  
Sbjct: 297 APDEVTFNAVITSLCQKGFVGRATKVLAQMS----EHG--CTPDIITYSSIMDGLCKERR 350

Query: 252 S-----------ANFLGFSCMAS-------FSALNKMAFYFPLVRV-----QCLCL---- 284
                       A  +  +C+          ++L +   +   ++V     +  C+    
Sbjct: 351 VDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDIT 410

Query: 285 NFLCLIDG-LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
            + C++DG LCK  K + A +L   +   GL P+  TY  L  GL  + +M      E  
Sbjct: 411 TYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEM------ERA 464

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
             +F+R+ + GL PD   YN ++   CK  R       F  ++ +   PD  T+  L++ 
Sbjct: 465 IGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEG 524

Query: 404 LEINSFFRQV 413
           +    F  + 
Sbjct: 525 IAYEGFLEEA 534



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 135/306 (44%), Gaps = 40/306 (13%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD +TYN LI   C  G V     V   +L    +P  VT++ L+   C ES   +A  L
Sbjct: 158 PDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVL 217

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             ++R  GCE D+ TYN LIN +C  G    AL +   + +    +G  C+PDA+TY+ +
Sbjct: 218 LDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPS----YG--CKPDAVTYTPV 271

Query: 243 IDGLC-----KEAGSANFLGFS--CM-------ASFSALNKMAFYFPLVRVQCLCLNFLC 288
           +  LC     +EA       FS  C        A  ++L +  F     +V        C
Sbjct: 272 LKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGC 331

Query: 289 ---------LIDGLCKISK----LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                    ++DGLCK  +    +K+ +EL   +     +P+ VT+N +I  LC  G  D
Sbjct: 332 TPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFD 391

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF-CKIGRVSSGFVIFGRILPSCFTPDA 394
                     +   ++  G  PD+ TYN +++ F CK  +      +   ++ +   PD 
Sbjct: 392 R------AIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDT 445

Query: 395 VTFTSL 400
            T+ SL
Sbjct: 446 TTYKSL 451



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 138/325 (42%), Gaps = 37/325 (11%)

Query: 85  PSRPPVTS---FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           P +PP  S    N     L +    D  L L   ++ +G  P     NILI   C  GRV
Sbjct: 53  PPKPPARSGGGANRRLRGLVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRV 112

Query: 142 SHGFVVLGRILRSCFTPDA--VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           +    V+         P A  +T+ +++   C    I  A  +   +       D FTYN
Sbjct: 113 ADAERVV-----EALGPSATIITYNTMVNGYCRAGNIDAARRMIDSVPFAP---DTFTYN 164

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LI  LC  G  + AL +F++M +        C P  +TYS ++D  CKE+G    +   
Sbjct: 165 PLIRALCVRGCVLDALAVFDDMLHRG------CSPSVVTYSILLDATCKESGYKQAVVL- 217

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
                  L++M        +    + +  LI+ +C    +  A ++  SLP  G  P+ V
Sbjct: 218 -------LDEMRSKGCEPDI----VTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAV 266

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY  +++ LC+      ++ +E    L  ++ S    PD  T+N +I   C+ G V    
Sbjct: 267 TYTPVLKSLCS------SERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRAT 320

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            +  ++     TPD +T++S++  L
Sbjct: 321 KVLAQMSEHGCTPDIITYSSIMDGL 345



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 12/125 (9%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LI  LC   ++  A  + ++L   G    ++TYN ++ G C  G +D  +         +
Sbjct: 102 LIKKLCADGRVADAERVVEAL---GPSATIITYNTMVNGYCRAGNIDAAR---------R 149

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            ++S    PD +TYN LI   C  G V     +F  +L    +P  VT++ L+      S
Sbjct: 150 MIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKES 209

Query: 409 FFRQV 413
            ++Q 
Sbjct: 210 GYKQA 214



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 12/138 (8%)

Query: 49  LEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDT 108
           ++ FL + CK+    D+ ++  +  LC            P  T++  L   L++    + 
Sbjct: 416 VDGFLCKSCKTEEALDLLNLMVSNGLC------------PDTTTYKSLAFGLSREDEMER 463

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
            + +F+R+   GL PD+  YN ++   CK  R          ++ +   PD  T+  L++
Sbjct: 464 AIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVE 523

Query: 169 DLCAESRIMEAAALFTKL 186
            +  E  + EA  L   L
Sbjct: 524 GIAYEGFLEEAKELLGNL 541


>gi|91806015|gb|ABE65736.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 360

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 162/325 (49%), Gaps = 25/325 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F  M+  RP  P +  F+ L   +AK   +D V+SL +++   G+  + YTY+I
Sbjct: 57  DDAIGLFGDMVKSRPF-PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            IN FC+  ++S    +LG++++  + P  VT  SL+   C  +RI EA AL  ++   G
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D  T+ TL++GL +      A+ L E M          C+PD +TY  +I+GLCK  
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG------CQPDLVTYGAVINGLCKR- 228

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G  +        + + LNKM       +++   + +  +IDGLCK   +  A +LF  + 
Sbjct: 229 GEPDL-------ALNLLNKMEKG----KIEADVVIYNTIIDGLCKYKHMDDAFDLFNKME 277

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+V TYN LI  LCN G+  +         L   +    + PDL  +N LI+ F 
Sbjct: 278 TKGIKPDVFTYNPLISCLCNYGRWSDASR------LLSDMLEKNINPDLVFFNALIDAFV 331

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAV 395
           K G++     ++  ++     P  V
Sbjct: 332 KEGKLVEAEKLYDEMVKRSIDPSFV 356



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 114/266 (42%), Gaps = 26/266 (9%)

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++     + G +++S   P  V F+ L+  +   ++     +L  +++  G   +++TY+
Sbjct: 55  KLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 114

Query: 200 TLINGLCRTGHTIVALNLFEEMAN-GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
             IN  CR     +AL +  +M   G G       P  +T +++++G C      N +  
Sbjct: 115 IFINYFCRRSQLSLALAILGKMMKLGYG-------PSIVTLNSLLNGFCH----GNRIS- 162

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
             +A    + +M +       Q   + F  L+ GL + +K   A  L + +   G  P++
Sbjct: 163 EAVALVDQMVEMGY-------QPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDL 215

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           VTY  +I GLC  G+ D          L  ++    +  D+  YN +I+  CK   +   
Sbjct: 216 VTYGAVINGLCKRGEPD------LALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDA 269

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKIL 404
           F +F ++      PD  T+  LI  L
Sbjct: 270 FDLFNKMETKGIKPDVFTYNPLISCL 295



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 73/162 (45%), Gaps = 1/162 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + + M+ ++  +P + ++  +   L K    D  L+L  ++    +  D   YN 
Sbjct: 197 SEAVALVERMV-VKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNT 255

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK   +   F +  ++      PD  T+  LI  LC   R  +A+ L + +    
Sbjct: 256 IIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKN 315

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
              D+  +N LI+   + G  + A  L++EM   + +   VC
Sbjct: 316 INPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKRSIDPSFVC 357


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 160/357 (44%), Gaps = 38/357 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL VFD ML+ R   P V +++IL     K   Y   ++L   +   G  PD  TYN+L
Sbjct: 269 DALAVFDDMLH-RGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVL 327

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  C  G V     +L  +      PDAVT+T ++K LC   R  E   L  ++    C
Sbjct: 328 INAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNC 387

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D  T+NT++  LC+ G    A+ + + M+    E G  C  D +TYS+I+DGLC + G
Sbjct: 388 APDEVTFNTIVTSLCQQGLVDRAIEVVDHMS----EHG--CVADIVTYSSILDGLC-DVG 440

Query: 252 SAN--------FLGFSC----MASFSALNKMAFYFPLVRVQCLCLNFLC----------- 288
             +           + C    +A  + L  +       R + L    LC           
Sbjct: 441 RVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFN 500

Query: 289 -LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            ++  LC+   +  A  + + +   G  P++VTYN +I GLCN+  +D+         L 
Sbjct: 501 TVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAME------LL 554

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             L S G  PD+ T+N L+   C + R      +   ++ S   PD +TF ++I  L
Sbjct: 555 SDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSL 611



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 156/364 (42%), Gaps = 54/364 (14%)

Query: 71  NEALCVFDYMLNMRPSR-PPVTSFNIL-------------------FGCLAKTKHYDTVL 110
           +EAL +FD M +      PPV   NIL                    G  A    Y+T++
Sbjct: 167 DEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAALGPSATVVTYNTMV 226

Query: 111 SLFKR----------LNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 160
           + + R          +N     PD +T+N LI   C  GR+     V   +L    +P  
Sbjct: 227 NGYCRAGRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSV 286

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220
           VT++ L+   C ES   +A AL  ++R  GCE D+ TYN LIN +C  G    ALN+   
Sbjct: 287 VTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSN 346

Query: 221 MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQ 280
           + +        C+PDA+TY+ ++  LC   GS  +     + +    N  A         
Sbjct: 347 LPSHG------CKPDAVTYTPVLKSLC---GSERWKEVEELLAEMTSNNCAPDE------ 391

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
              + F  ++  LC+   +  A E+   +   G + ++VTY+ ++ GLC+ G++D+    
Sbjct: 392 ---VTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVE- 447

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                L  RL S G  PD   Y  ++   C   +      +   +L S   PD VTF ++
Sbjct: 448 -----LLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTV 502

Query: 401 IKIL 404
           +  L
Sbjct: 503 VASL 506



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 141/326 (43%), Gaps = 26/326 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FN +   L +    D  + + ++++  G  PD  TYN +I+  C    +     +
Sbjct: 494 PDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMEL 553

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      PD VTF +L+K LC   R  +A  L   +    C  D  T+NT+I  LC+
Sbjct: 554 LSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQ 613

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A+   + MA  NG     C P++ TYS ++D L K AG A        A+   L
Sbjct: 614 KGLLTQAIETLKIMAE-NG-----CVPNSSTYSIVVDALLK-AGKAQ-------AALELL 659

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           + M    P +      + +  +I  L K  K++ A +L + +   GL P+  TY  L  G
Sbjct: 660 SGMTNGTPDL------ITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYG 713

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           +C +   D          + +R+  TGL PD   YN ++  FC+  R       F  ++ 
Sbjct: 714 VCREDGTDR------AVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVS 767

Query: 388 SCFTPDAVTFTSLIKILEINSFFRQV 413
           S   PD  T+  L++ L       + 
Sbjct: 768 SGCMPDESTYVILLEALAYGGLLDEA 793



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 110/275 (40%), Gaps = 31/275 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N +   L      D  + L   L   G  PD  T+N L+   C + R      +
Sbjct: 529 PDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQL 588

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  ++RS   PD +TF ++I  LC +  + +A      +   GC  +  TY+ +++ L +
Sbjct: 589 MANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLK 648

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-SCMASFSA 266
            G    AL L   M NG         PD ITY+T+I  L K       L     M S   
Sbjct: 649 AGKAQAALELLSGMTNGT--------PDLITYNTVISNLTKAGKMEEALDLLRVMVSNGL 700

Query: 267 LNKMAFYFPLV-----------------RVQCLCLN-----FLCLIDGLCKISKLKIARE 304
                 Y  L                  RVQ   L+     +  ++ G C+  +  +A +
Sbjct: 701 CPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAID 760

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
            F  +  +G MP+  TY IL+  L   G +DE K 
Sbjct: 761 CFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKR 795



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 98/241 (40%), Gaps = 51/241 (21%)

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           +  L + G    AL LF+ MA+G G     C P  +  + +I  LC +   ++       
Sbjct: 157 LRSLVQRGEIDEALVLFDSMASGGGRN---CPP-VVPCNILIKRLCSDGRVSDAERV--- 209

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
             F+AL   A            + +  +++G C+  +++ AR L   +P     P+  T+
Sbjct: 210 --FAALGPSATV----------VTYNTMVNGYCRAGRIEDARRLINGMP---FPPDTFTF 254

Query: 322 NILIRGLCNDGQM-------DETKH----------------------YETVFLLFKRLNS 352
           N LIR LC  G++       D+  H                      Y     L   + +
Sbjct: 255 NPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRA 314

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            G  PD+ TYN+LIN  C  G V     I   +      PDAVT+T ++K L  +  +++
Sbjct: 315 KGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKE 374

Query: 413 V 413
           V
Sbjct: 375 V 375



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 53/138 (38%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A    + +  M    P + ++N +   L K    +  L L + +   GL PD  TY  L
Sbjct: 651 KAQAALELLSGMTNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSL 710

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
               C+         +L R+  +  +PD   +  ++   C + R   A   F  +   GC
Sbjct: 711 AYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGC 770

Query: 192 ELDVFTYNTLINGLCRTG 209
             D  TY  L+  L   G
Sbjct: 771 MPDESTYVILLEALAYGG 788



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 43/103 (41%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T++  L   + +    D  + + +R+  TGL PD   YN ++  FC+  R       
Sbjct: 702 PDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDC 761

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
              ++ S   PD  T+  L++ L     + EA  L   L   G
Sbjct: 762 FAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLG 804


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 142/310 (45%), Gaps = 16/310 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     +D    L K +   G  PD  TY+ +I   C   +V   F++   +     TP
Sbjct: 197 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 256

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T LI   C    I +A  LF ++R  GC   V TY  LI+   +      A ++F
Sbjct: 257 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 316

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFSALNKMAFYFPLV 277
             M +        C P+ +TY  ++DGLCK    S  F  ++ +   S      FYFP  
Sbjct: 317 HRMVDAG------CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCE 370

Query: 278 RVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
               L  N +    L+DGLCK  K+  A EL  ++  +G  PN + Y+ LI G C  G++
Sbjct: 371 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 430

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           D  +       +F ++   G  P ++TY  LI+   K GR+     +  ++L    TP+ 
Sbjct: 431 DSAQE------VFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNV 484

Query: 395 VTFTSLIKIL 404
           VT+T++I  L
Sbjct: 485 VTYTAMIDGL 494



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 154/329 (46%), Gaps = 32/329 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  ++++ +   L      +    LF+ + + G+ PD YTY ILI+ FCK G +     +
Sbjct: 221 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 280

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +     +P  VT+T+LI       ++ +A  +F ++   GC  +  TY  L++GLC+
Sbjct: 281 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 340

Query: 208 TGHTIVALNLFEEM----ANGNGEFGVVCE------PDAITYSTIIDGLCK--EAGSANF 255
            G+   A  ++ ++     + + +F   CE      P+ +TY  ++DGLCK  +   A+ 
Sbjct: 341 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 400

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L  + ++S    N + +                LIDG CK  K+  A+E+F  + + G +
Sbjct: 401 LLDAMLSSGCEPNHIVYD--------------ALIDGFCKAGKIDSAQEVFLQMTKCGYL 446

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+V TY  LI  +  DG++D          +  ++      P++ TY  +I+  C+IG  
Sbjct: 447 PSVHTYTSLIDRMFKDGRLD------LAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 500

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                +   +     +P+ VT+T+LI  L
Sbjct: 501 EKALKLLSLMEEKGCSPNVVTYTALIDGL 529



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 144/340 (42%), Gaps = 40/340 (11%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           + M    P V ++ IL     K    +    LF+ +   G  P   TY  LI+ + K  +
Sbjct: 249 MKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQ 308

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR----------VFG 190
           V     +  R++ +   P+ VT+ +L+  LC    I +A  ++ KL            F 
Sbjct: 309 VPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFP 368

Query: 191 CE------LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           CE       +V TY  L++GLC+      A  L + M +        CEP+ I Y  +ID
Sbjct: 369 CEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSG------CEPNHIVYDALID 422

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           G CK AG  +    S    F  + K   Y P V        +  LID + K  +L +A +
Sbjct: 423 GFCK-AGKID----SAQEVFLQMTKCG-YLPSVH------TYTSLIDRMFKDGRLDLAMK 470

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +   + +    PNVVTY  +I GLC  G+       E    L   +   G  P++ TY  
Sbjct: 471 VLSQMLKDSCTPNVVTYTAMIDGLCRIGES------EKALKLLSLMEEKGCSPNVVTYTA 524

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           LI+   K G++     +F ++     +P+ VT+  LI  L
Sbjct: 525 LIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHL 564



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 137/357 (38%), Gaps = 86/357 (24%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   L K    D    L   +  +G  P+   Y+ LI+ FCK G++     V
Sbjct: 377 PNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEV 436

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++ +  + P   T+TSLI  +  + R+  A  + +++    C  +V TY  +I+GLCR
Sbjct: 437 FLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCR 496

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G +  AL L   M          C P+ +TY+ +IDGL K                   
Sbjct: 497 IGESEKALKLLSLMEEKG------CSPNVVTYTALIDGLGKAG----------------- 533

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                         K+ ++ +LF  + R G  PN VTY +LI  
Sbjct: 534 ------------------------------KIDLSLDLFTQMSRKGCSPNYVTYRVLINH 563

Query: 328 LCNDGQMDE---------------------------TKHYETVFLLFKRLNSTGLFPDLY 360
           LC  G +D+                           +K +     + + + S G  P   
Sbjct: 564 LCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAP 623

Query: 361 TYNILINCFCKIGRVSSGFVIFGRIL--PSCFTPDAVTFTSLIKIL----EINSFFR 411
            Y +LI+CF K GR+     +   ++  PS    D   + SLI+ L    ++   FR
Sbjct: 624 VYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFR 680



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 144/333 (43%), Gaps = 48/333 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  + D ML+     P    ++ L     K    D+   +F ++   G  P  +TY  
Sbjct: 396 DHAHELLDAMLS-SGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 454

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+   K GR+     VL ++L+   TP+ VT+T++I  LC      +A  L + +   G
Sbjct: 455 LIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 514

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--- 247
           C  +V TY  LI+GL + G   ++L+LF +M+         C P+ +TY  +I+ LC   
Sbjct: 515 CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG------CSPNYVTYRVLINHLCAAG 568

Query: 248 ------------KEAGSANFL-GFSC---------MASFSALNKMAFY--FPLVRVQCLC 283
                       K+     +L G+ C         +AS   L +M  Y   P+  V    
Sbjct: 569 LLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPV---- 624

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPR--AGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             +  LID   K  +L+IA EL + +    + +  +   Y  LI+ LC   Q++E     
Sbjct: 625 --YGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEA---- 678

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
             F L+  +   G  P+L  +  LI    ++ +
Sbjct: 679 --FRLYSEMTRRGFVPELSVFVCLIKGLVEVKK 709



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 130/315 (41%), Gaps = 44/315 (13%)

Query: 116 LNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175
           ++ +G   DR+T     +  CK GR +     L  I R  F  D V  T +I  L   S 
Sbjct: 1   MSESGFCMDRFTVGCFAHALCKEGRWADA---LDMIEREDFKLDTVLCTHMISGLMEASY 57

Query: 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
             EA +   ++R   C  +V TY TL++G  +         +   M          C P+
Sbjct: 58  FDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEG------CNPN 111

Query: 236 AITYSTIIDGLCKEAGSAN----------------------FLGFSC----MASFSALN- 268
              +++++   C E   A                       F+G  C    + S   L+ 
Sbjct: 112 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDL 171

Query: 269 KMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
               Y  ++   C+   +N       LC + K   A +L + + R G +P+  TY+ +I 
Sbjct: 172 AEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVIT 231

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC+  ++      E  FLLF+ +   G+ PD+YTY ILI+ FCK G +     +F  + 
Sbjct: 232 FLCHATKV------EKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMR 285

Query: 387 PSCFTPDAVTFTSLI 401
               +P  VT+T+LI
Sbjct: 286 SVGCSPTVVTYTALI 300



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 122/314 (38%), Gaps = 32/314 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L     K K       +   +   G  P+   +N L++ +C     ++ + +
Sbjct: 75  PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 134

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG------CELDVFTYNTL 201
           L R+      P  V +   I  +C + ++     L    +++G      C L+       
Sbjct: 135 LNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANF 194

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSC 260
              LC  G    A  L +EM       G V  PD  TYS +I  LC        FL F  
Sbjct: 195 ARCLCGVGKFDKAFQLIKEMMRK----GFV--PDTSTYSKVITFLCHATKVEKAFLLFQE 248

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           M       KM    P V        +  LID  CK   ++ A+ LF+ +   G  P VVT
Sbjct: 249 M-------KMVGVTPDV------YTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVT 295

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y  LI       Q+ +         +F R+   G  P+  TY  L++  CK G +S  F 
Sbjct: 296 YTALIHAYLKAKQVPQAND------IFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFE 349

Query: 381 IFGRILPSCFTPDA 394
           ++ +++ +  + D+
Sbjct: 350 VYAKLIGTSDSADS 363



 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 6/119 (5%)

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR--SCFTPDA 160
           +K +   L + + +   G  P    Y +LI+CF K GR+     +   ++   S    D 
Sbjct: 600 SKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDN 659

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKL--RVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
             + SLI+ LC  S++ EA  L++++  R F  EL VF    LI GL        AL L
Sbjct: 660 DMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFV--CLIKGLVEVKKWDEALQL 716



 Score = 46.2 bits (108), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 49/252 (19%), Positives = 88/252 (34%), Gaps = 21/252 (8%)

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S F  D  T       LC E R  +A  +  +      +LD      +I+GL    +  
Sbjct: 3   ESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDF---KLDTVLCTHMISGLMEASYFD 59

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A++    M   +      C P+ +TY T++ G  K+      LG+        + +   
Sbjct: 60  EAMSFLHRMRCNS------CIPNVVTYRTLLSGFLKKKQ----LGWCKRIINMMMTEGCN 109

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
             P +        F  L+   C       A +L   +   G  P  V YNI I  +C   
Sbjct: 110 PNPSL--------FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQE 161

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           ++      +    ++  + +     +         C C +G+    F +   ++   F P
Sbjct: 162 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP 221

Query: 393 DAVTFTSLIKIL 404
           D  T++ +I  L
Sbjct: 222 DTSTYSKVITFL 233


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 157/335 (46%), Gaps = 26/335 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+C F   + +        SFNIL   L +    D    LF  +   G  PD  TYN 
Sbjct: 219 DEAVCFFREQMGLHGPFDSC-SFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNT 277

Query: 131 LINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           LIN FC++  V  G  +L  +L ++  +PD VT+TS+I   C   ++ +A+ LF  +   
Sbjct: 278 LINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISS 337

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G + + FT+N LING  + G  + A N++EEM        + C PD IT++++IDG C+ 
Sbjct: 338 GIKPNAFTFNILINGFGKVGDMVSAENMYEEM------LLLGCPPDIITFTSLIDGHCRT 391

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                 L      +   L+   + F +            L + LCK ++L  AR   + L
Sbjct: 392 GKVERSLKLWHELNARNLSPNEYTFAI------------LTNALCKENRLHEARGFLRDL 439

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
               ++     YN +I G C  G +DE        ++   +      PD  TY ILI   
Sbjct: 440 KWRHIVAQPFMYNPVIDGFCKAGNVDEAN------VILAEMEEKRCKPDKITYTILIIGH 493

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           C  GR+S    IF R+L +   PD++T TSLI  L
Sbjct: 494 CMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCL 528



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 131/311 (42%), Gaps = 65/311 (20%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +++ L   L++   +++  +++  +N+ G  PD      L++     G+ +     + R 
Sbjct: 139 TYSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFN-----IART 193

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                    V +  L+  L   +++ EA   F +        D  ++N LI GLCR G  
Sbjct: 194 WVDGVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKV 253

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A  LF EM       G  C PD ITY+T                              
Sbjct: 254 DKAFELFNEMR------GFGCSPDVITYNT------------------------------ 277

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL-PRAGLMPNVVTYNILIRGLCN 330
                            LI+G C+++++    +L + L  +  L P+VVTY  +I G C 
Sbjct: 278 -----------------LINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCK 320

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G+M      E   +LF  + S+G+ P+ +T+NILIN F K+G + S   ++  +L    
Sbjct: 321 LGKM------EKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGC 374

Query: 391 TPDAVTFTSLI 401
            PD +TFTSLI
Sbjct: 375 PPDIITFTSLI 385



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 59/131 (45%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + LN R   P   +F IL   L K           + L    +    + YN +I+ FCK 
Sbjct: 402 HELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKA 461

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G V    V+L  +      PD +T+T LI   C + R+ EA ++F ++   GC  D  T 
Sbjct: 462 GNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITM 521

Query: 199 NTLINGLCRTG 209
            +LI+ L + G
Sbjct: 522 TSLISCLLKAG 532


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 140/288 (48%), Gaps = 23/288 (7%)

Query: 115 RLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174
           R     + PD  T+ ILI+C C  G ++ GF  LG+I+++    DAV FT L++ LCA+ 
Sbjct: 3   RAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKK 62

Query: 175 RIMEAAAL-FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
           R  +A  +   ++   GC  DVF+Y+TL+ GLC       A  L   MA    E G  C 
Sbjct: 63  RTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMA----EDGDNCP 118

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
           PD ++YST+I G  KE          C         +    P   V C       +IDGL
Sbjct: 119 PDVVSYSTVIHGFFKEGDVGKAYTLFC-------KMLDHGIPPNVVTC-----NSVIDGL 166

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK+  +  A  + Q +    +MPN  TYN LI G  + GQ  E         + K ++  
Sbjct: 167 CKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTE------AVRILKEMSRD 220

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G  P++ TYN+LI+C CK G  +    IF  ++ S   PDA T+ SL+
Sbjct: 221 GQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLL 268



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 167/374 (44%), Gaps = 41/374 (10%)

Query: 44  KDRASLEQFLKERC-------KSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNIL 96
           K  A L+Q + E          S   G ++S    EA+ +   M +    RP V ++N+L
Sbjct: 174 KAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEM-SRDGQRPNVVTYNML 232

Query: 97  FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF 156
             CL K+  +     +F  +  +G  PD  TY  L++ +   G +     V   ++++  
Sbjct: 233 IDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGM 292

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
             +  TF+  I   C   R+ EA+  F K++  G   D+ TY T+I+GLC+ G    A++
Sbjct: 293 RSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMS 352

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
            F +M +          P+ IT++T+I             GFS    +    ++ FY  +
Sbjct: 353 RFCQMIDDG------LSPNIITFTTLIH------------GFSMYGKWEKAEEL-FYEMM 393

Query: 277 VR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
            R +      F  +ID L K  K+  A++LF  +PRAG  PNVV+YN +I G    G++ 
Sbjct: 394 DRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVG 453

Query: 336 ET-KHYETVFL------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           E  K  + + L            L   + S GL PD+ T   LI+  C+ GR+     +F
Sbjct: 454 EVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCEDGRIEDILTLF 513

Query: 383 GRILPSCFTPDAVT 396
             +L      D +T
Sbjct: 514 REMLGKADKTDTIT 527



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 136/317 (42%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++ +     K        +LF ++   G+ P+  T N +I+  CK+  +     V
Sbjct: 119 PDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAV 178

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L +++     P+  T+ SLI    +  +  EA  +  ++   G   +V TYN LI+ LC+
Sbjct: 179 LQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCK 238

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +G    A  +F  M           +PDA TY +++ G   E    N +  + +      
Sbjct: 239 SGFHAEAREIFNSMIQSGP------KPDATTYGSLLHGYATE---GNLVEMNNVKDLMVQ 289

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N M        ++         I   CK  +L  A   F  + + G MP++VTY  +I G
Sbjct: 290 NGMRSNHHTFSIE---------IYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDG 340

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G++D+          F ++   GL P++ T+  LI+ F   G+      +F  ++ 
Sbjct: 341 LCKIGRLDDAMSR------FCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMD 394

Query: 388 SCFTPDAVTFTSLIKIL 404
               PD   FT++I  L
Sbjct: 395 RGIPPDVTIFTAMIDRL 411



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 138/314 (43%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T++N L      +  +   + + K ++  G  P+  TYN+LI+C CK G  +    +
Sbjct: 189 PNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREI 248

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +++S   PDA T+ SL+     E  ++E   +   +   G   +  T++  I   C+
Sbjct: 249 FNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCK 308

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A   F +M     + G +  PD +TY+T+IDGLCK     + +   C      L
Sbjct: 309 CGRLDEASLTFIKMQ----QLGFM--PDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGL 362

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +      P +      + F  LI G     K + A ELF  +   G+ P+V  +  +I  
Sbjct: 363 S------PNI------ITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDR 410

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           L  +G++ E +       LF  +   G  P++ +YN +I+ +   G V     +   +L 
Sbjct: 411 LFKEGKVTEAQK------LFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLL 464

Query: 388 SCFTPDAVTFTSLI 401
               P AVTF +L+
Sbjct: 465 IGLKPTAVTFNTLL 478



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 146/347 (42%), Gaps = 50/347 (14%)

Query: 87  RPPVTSFNILFGCL-AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           R    +F  L   L AK +  D +  + +R+   G  PD ++Y+ L+   C   +     
Sbjct: 45  RADAVAFTPLLRTLCAKKRTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAA 104

Query: 146 VVLGRILRSCFT--PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
            ++  +        PD V+++++I     E  + +A  LF K+   G   +V T N++I+
Sbjct: 105 ELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVID 164

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GLC+      A  + ++M + +        P+  TY+++I G                 +
Sbjct: 165 GLCKVQAMDKAEAVLQQMIDEH------IMPNCTTYNSLIHGYLSSG--------QWTEA 210

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              L +M+       V    + +  LID LCK      ARE+F S+ ++G  P+  TY  
Sbjct: 211 VRILKEMSRDGQRPNV----VTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGS 266

Query: 324 LIRGLCNDGQMDE--------------TKHY---------------ETVFLLFKRLNSTG 354
           L+ G   +G + E              + H+               +   L F ++   G
Sbjct: 267 LLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLG 326

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             PD+ TY  +I+  CKIGR+      F +++    +P+ +TFT+LI
Sbjct: 327 FMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLI 373



 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           R  +  + PD+ T+ ILI+C C  G ++ GF   G+I+ +    DAV FT L++ L
Sbjct: 3   RAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTL 58


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 160/335 (47%), Gaps = 19/335 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYT 127
            +A  VFD +L  R     +   N     +A+      V S + R+   G   + P  +T
Sbjct: 37  EDARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHT 94

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKL 186
           Y ILI C C+ GR+  GF  LG +++  F  DA+TFT L+K LCA+ R  +A  +   ++
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRM 154

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              GC  DVF+YN L+ GLC    +  AL L   MA+   + G    PD ++Y+T+++G 
Sbjct: 155 TELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMAD---DRGGGSPPDVVSYNTVLNGF 211

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            KE         +   +   LN M        V   C+ +  ++ G C   + K A    
Sbjct: 212 FKEGIQTKLTAQAMDKAMEVLNTMVKNG----VMPDCMTYNSILHGYCSSGQPKEAIGTL 267

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           + +   G+ PNVVTY+ L+  LC +G+  E +       +F  +   GL PD+ TY  L+
Sbjct: 268 KKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARK------IFDSMTKRGLEPDIATYRTLL 321

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              CK GRV     +F  ++     PD +T+ +LI
Sbjct: 322 QGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLI 356



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 157/351 (44%), Gaps = 31/351 (8%)

Query: 49  LEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDT 108
           L  F KE  ++     +T+   ++A+ V + M+      P   ++N +      +     
Sbjct: 208 LNGFFKEGIQTK----LTAQAMDKAMEVLNTMVK-NGVMPDCMTYNSILHGYCSSGQPKE 262

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
            +   K++   G+ P+  TY+ L+N  CK GR +    +   + +    PD  T+ +L++
Sbjct: 263 AIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQ 322

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
             C E R++E+  LF  +   G + D+ TYNTLI+G C  G    A  L   M +     
Sbjct: 323 GHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVS----- 377

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
            V  +PD +TY T+I+G C+ +   + L  F  M S               V    + + 
Sbjct: 378 -VGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG-------------VSPNIITYN 423

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            ++ GL    +   A+EL+ S+ ++G    + TYNI++ GLC +   DE         +F
Sbjct: 424 IILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDE------ALRMF 477

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
           + L  T L  +  T+NI+I    K GR+     +F     +   PD  T++
Sbjct: 478 QNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYS 528



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 147/341 (43%), Gaps = 29/341 (8%)

Query: 66  TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
           +S  P EA+     M +     P V +++ L   L K         +F  +   GL PD 
Sbjct: 256 SSGQPKEAIGTLKKMRS-DGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDI 314

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            TY  L+   CK GRV     +   ++R    PD +T+ +LI   C   ++ EA  L   
Sbjct: 315 ATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLAS 374

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +   G + D+ TY TLING CR      AL LF+EM +          P+ ITY+ I+ G
Sbjct: 375 MVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG------VSPNIITYNIILQG 428

Query: 246 L--CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           L   +   +A  L  S   S + L    +                ++ GLCK +    A 
Sbjct: 429 LFHTRRTAAAKELYVSITKSGTQLELSTYNI--------------ILHGLCKNNLTDEAL 474

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            +FQ+L    L     T+NI+I  L   G+MDE K       LF   ++ GL PD+ TY+
Sbjct: 475 RMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKD------LFAAHSANGLVPDVRTYS 528

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++     + G +     +F  +  +  + D+    S+++ L
Sbjct: 529 LMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKL 569



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 145/321 (45%), Gaps = 35/321 (10%)

Query: 95  ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS 154
           +L G  A  +  D +  + +R+   G  PD ++YN L+   C   R      +L  +   
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192

Query: 155 ---CFTPDAVTFTSLIKDLCAE--SRIMEAAALFTKLRVF------GCELDVFTYNTLIN 203
                 PD V++ +++     E     + A A+   + V       G   D  TYN++++
Sbjct: 193 RGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 252

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C +G    A+   ++M +         EP+ +TYS++++ LCK   S           
Sbjct: 253 GYCSSGQPKEAIGTLKKMRSDG------VEPNVVTYSSLMNYLCKNGRSTEARKI----- 301

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F ++ K      +         +  L+ G CK  ++  + +LF  + R G+ P+++TYN 
Sbjct: 302 FDSMTKRGLEPDIA-------TYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNT 354

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI G C  G+MDE         L   + S G+ PD+ TY  LIN +C++ R+     +F 
Sbjct: 355 LIDGCCLAGKMDEATK------LLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFK 408

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            ++ S  +P+ +T+  +++ L
Sbjct: 409 EMVSSGVSPNIITYNIILQGL 429



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 56/120 (46%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           ++++NI+   L K    D  L +F+ L LT L  +  T+NI+I    K GR+     +  
Sbjct: 454 LSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFA 513

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
               +   PD  T++ + ++L  +  + E   LF  +   GC  D    N+++  L + G
Sbjct: 514 AHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRG 573



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           AR +F  L R G   ++   N  +  +           Y  +     R  +  + P ++T
Sbjct: 39  ARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRM----ARAGAGKVTPTVHT 94

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           Y ILI C C+ GR+  GF   G ++   F  DA+TFT L+K L
Sbjct: 95  YAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGL 137


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 166/336 (49%), Gaps = 27/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYT 127
            +A  VFD +L  R     +   N     +A+      V S + R+   G   + PD  T
Sbjct: 32  EDARHVFDELLR-RGRGASIYGLNRALADVARDSPAAAV-SRYNRMARAGADEVTPDLCT 89

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKL 186
           Y ILI C C+ GR+  GF  LG +++  F  DA+ FT L+K LCA+ R  +A  +   ++
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              GC  +VF+YN L+ GLC    +  AL L   MA+   + G    PD ++Y+T+I+G 
Sbjct: 150 TELGCIPNVFSYNILLKGLCDENRSQEALELLHMMAD---DRGGGSPPDVVSYTTVINGF 206

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            KE  S          ++S  ++M     L  V    + +  +I  LCK   +  A E+ 
Sbjct: 207 FKEGDSDK--------AYSTYHEMLDRGILPDV----VTYNSIIAALCKAQAMDKAMEVL 254

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            ++ + G+MP+ +TYN ++ G C+ GQ  E   +       K++ S G+ PD+ TY++L+
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF------LKKMRSDGVEPDVVTYSLLM 308

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  CK GR      IF  +      P+  T+ +L++
Sbjct: 309 DYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQ 344



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 151/318 (47%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P    F+IL    AK    D  + +F ++   GL P+  TY  +I   CK GRV    +
Sbjct: 368 HPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 427

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              +++    +P  + + SLI  LC  ++   A  L  ++   G  L+   +N++I+  C
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHC 487

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G  I +  LFE M       GV  +P+ ITY+T+I+G C  AG  +      M   S 
Sbjct: 488 KEGRVIESEKLFELMV----RIGV--KPNVITYNTLINGYCL-AGKMD----EAMKLLSG 536

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +         V ++   + +  LI+G CKIS+++ A  LF+ +  +G+ P+++TYNI+++
Sbjct: 537 MVS-------VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQ 589

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL       +T+       L+ R+  +G   +L TYNI+++  CK         +F  + 
Sbjct: 590 GLF------QTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLC 643

Query: 387 PSCFTPDAVTFTSLIKIL 404
                 +A TF  +I  L
Sbjct: 644 LMDLKLEARTFNIMIDAL 661



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 158/385 (41%), Gaps = 60/385 (15%)

Query: 71  NEALCVFDYMLNMRP--SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
            EAL +   M + R   S P V S+  +     K    D   S +  +   G+ PD  TY
Sbjct: 175 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 234

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N +I   CK   +     VL  ++++   PD +T+ S++   C+  +  EA     K+R 
Sbjct: 235 NSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS 294

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G E DV TY+ L++ LC+ G  + A  +F+ M           +P+  TY T++ G   
Sbjct: 295 DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRG------LKPEITTYGTLLQGYAT 348

Query: 249 EAGSANFLG----------------FSCM----ASFSALNKMAFYFPLVRVQCL---CLN 285
           +       G                FS +    A    +++    F  +R Q L    + 
Sbjct: 349 KGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVT 408

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH------ 339
           +  +I  LCK  +++ A   F+ +   GL P  + YN LI GLC   + +  +       
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468

Query: 340 -----YETVFL------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
                  T+F                   LF+ +   G+ P++ TYN LIN +C  G++ 
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMD 528

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
               +   ++     P+ VT+++LI
Sbjct: 529 EAMKLLSGMVSVGLKPNTVTYSTLI 553



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 146/328 (44%), Gaps = 27/328 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ VF  M   +   P   ++  + G L K+   +  +  F+++   GL P    YN 
Sbjct: 388 DQAMLVFSKM-RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 446

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C   +      ++  +L      + + F S+I   C E R++E+  LF  +   G
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + +V TYNTLING C  G    A+ L   M +      V  +P+ +TYST+I+G CK +
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVS------VGLKPNTVTYSTLINGYCKIS 560

Query: 251 GSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              + L  F  M S               V    + +  ++ GL +  +   A+EL+  +
Sbjct: 561 RMEDALVLFKEMESSG-------------VSPDIITYNIILQGLFQTRRTAAAKELYVRI 607

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             +G    + TYNI++ GLC +   D+         +F+ L    L  +  T+NI+I+  
Sbjct: 608 TESGTQIELSTYNIILHGLCKNKLTDDA------LQMFQNLCLMDLKLEARTFNIMIDAL 661

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTF 397
            K+GR      +F     +   P+  T+
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGLVPNYWTY 689



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 130/293 (44%), Gaps = 24/293 (8%)

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           LF+ +   G+ P+  TYN LIN +C  G++     +L  ++     P+ VT+++LI   C
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 557

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
             SR+ +A  LF ++   G   D+ TYN ++ GL +T  T  A  L+  +     E G  
Sbjct: 558 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT----ESGTQ 613

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
            E    TY+ I+ GLCK     N L    +  F  L        L+ ++     F  +ID
Sbjct: 614 IELS--TYNIILHGLCK-----NKLTDDALQMFQNL-------CLMDLKLEARTFNIMID 659

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
            L K+ +   A++LF +    GL+PN  TY ++   +   G ++E         LF  + 
Sbjct: 660 ALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQ------LFLSME 713

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             G   D    N ++    + G ++        I    F+ +A T +  I +L
Sbjct: 714 DNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLL 766


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 166/336 (49%), Gaps = 27/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYT 127
            +A  VFD +L  R     +   N     +A+      V S + R+   G   + PD  T
Sbjct: 32  EDARHVFDELLR-RGRGASIYGLNRALADVARDSPAAAV-SRYNRMARAGADEVTPDLCT 89

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKL 186
           Y ILI C C+ GR+  GF  LG +++  F  DA+ FT L+K LCA+ R  +A  +   ++
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              GC  +VF+YN L+ GLC    +  AL L   MA+   + G    PD ++Y+T+I+G 
Sbjct: 150 TELGCIPNVFSYNILLKGLCDENRSQEALELLHMMAD---DRGGGSPPDVVSYTTVINGF 206

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            KE  S          ++S  ++M     L  V    + +  +I  LCK   +  A E+ 
Sbjct: 207 FKEGDSDK--------AYSTYHEMLDRGILPDV----VTYNSIIAALCKAQAMDKAMEVL 254

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            ++ + G+MP+ +TYN ++ G C+ GQ  E   +       K++ S G+ PD+ TY++L+
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF------LKKMRSDGVEPDVVTYSLLM 308

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  CK GR      IF  +      P+  T+ +L++
Sbjct: 309 DYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQ 344



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 159/385 (41%), Gaps = 60/385 (15%)

Query: 71  NEALCVFDYMLNMRP--SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
            EAL +   M + R   S P V S+  +     K    D   S +  +   G+ PD  TY
Sbjct: 175 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTY 234

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N +I   CK   +     VL  ++++   PD +T+ S++   C+  +  EA     K+R 
Sbjct: 235 NSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS 294

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G E DV TY+ L++ LC+ G  + A  +F+ M           +P+  TY T++ G   
Sbjct: 295 DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRG------LKPEITTYGTLLQGYAT 348

Query: 249 EAGSANFLG----------------FSCM----ASFSALNKMAFYFPLVRVQCL---CLN 285
           +       G                FS +    A+   +++    F  +R Q L    + 
Sbjct: 349 KGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVT 408

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH------ 339
           +  +I  LCK  +++ A   F+ +   GL P  + YN LI GLC   + +  +       
Sbjct: 409 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 468

Query: 340 -----YETVFL------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
                  T+F                   LF+ +   G+ P++ TYN LIN +C  G++ 
Sbjct: 469 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMD 528

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
               +   ++     P+ VT+++LI
Sbjct: 529 EAMKLLSGMVSVGLKPNTVTYSTLI 553



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 151/342 (44%), Gaps = 32/342 (9%)

Query: 57  CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
           C  + +G +     ++A+ VF  M   +   P   ++  + G L K+   +  +  F+++
Sbjct: 379 CAYANQGKV-----DQAMLVFSKM-RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
              GL P    YN LI+  C   +      ++  +L      + + F S+I   C E R+
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
           +E+  LF  +   G + +V TYNTLING C  G    A+ L   M +      V  +P+ 
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVS------VGLKPNT 546

Query: 237 ITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
           +TYST+I+G CK +   + L  F  M S               V    + +  ++ GL +
Sbjct: 547 VTYSTLINGYCKISRMEDALVLFKEMESSG-------------VSPDIITYNIILQGLFQ 593

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
             +   A+EL+  +  +G    + TYNI++ GLC +   D+         +F+ L    L
Sbjct: 594 TRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDA------LQMFQNLCLMDL 647

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
             +  T+NI+I+   K+GR      +F     +   P+  T+
Sbjct: 648 KLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 130/293 (44%), Gaps = 24/293 (8%)

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           LF+ +   G+ P+  TYN LIN +C  G++     +L  ++     P+ VT+++LI   C
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 557

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
             SR+ +A  LF ++   G   D+ TYN ++ GL +T  T  A  L+  +     E G  
Sbjct: 558 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRIT----ESGTQ 613

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
            E    TY+ I+ GLCK     N L    +  F  L        L+ ++     F  +ID
Sbjct: 614 IELS--TYNIILHGLCK-----NKLTDDALQMFQNL-------CLMDLKLEARTFNIMID 659

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
            L K+ +   A++LF +    GL+PN  TY ++   +   G ++E         LF  + 
Sbjct: 660 ALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQ------LFLSME 713

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             G   D    N ++    + G ++        I    F+ +A T +  I +L
Sbjct: 714 DNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLL 766


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 163/354 (46%), Gaps = 36/354 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A+ + D M N +  +P + +FN +   L K + +D    +F+ ++   + PD  ++NI
Sbjct: 209 DAAIALVDSMAN-KGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNI 267

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  FC++G V         + +   TPD V+F+ LI       ++  AAA   +++  G
Sbjct: 268 LIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLG 327

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--- 247
              D   Y  +I G CR G    AL + +EM       G+ C PD +TY+T+++GLC   
Sbjct: 328 LVPDGVIYTMVIGGFCRAGSMSEALRVRDEMV------GLGCLPDVVTYNTLLNGLCKQH 381

Query: 248 ------------KEAGSANFL--------GFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
                       KE G    L        G+    +F    ++       R++   + + 
Sbjct: 382 RLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYN 441

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LIDG+C+   L  A EL+  +    + PN VTY+ILI   C  GQ++E       F   
Sbjct: 442 SLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEA------FGFL 495

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             + S G  P++ TYN +I  +C+ G V  G     +++     PD +TF +LI
Sbjct: 496 DEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLI 549



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 154/333 (46%), Gaps = 29/333 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+  +  M   R   P V SF+ L G  +     D   +  + +   GL PD   Y +
Sbjct: 279 EEAMKFYKEM-QQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTM 337

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I  FC+ G +S    V   ++     PD VT+ +L+  LC + R+++A  L  +++  G
Sbjct: 338 VIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERG 397

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ T+ TLI+G CR G+   AL LF+ + +          PD + Y+++IDG+C++ 
Sbjct: 398 VTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQR------LRPDVVAYNSLIDGMCRKG 451

Query: 251 --GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
               AN L     A     N + +                LID  C+  +++ A      
Sbjct: 452 DLAKANELWDDMHAREIFPNHVTYSI--------------LIDSHCEKGQVEEAFGFLDE 497

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G +PN++TYN +I+G C  G + + + +       +++    + PDL T+N LI+ 
Sbjct: 498 MVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQF------LQKMMQDNILPDLITFNTLIHG 551

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + K   +   F +F  +      PDAVT+  +I
Sbjct: 552 YIKEENMHGAFNVFNIMEKEMVQPDAVTYNMII 584



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 154/365 (42%), Gaps = 62/365 (16%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           + NI+     K+  +D   ++   +    +FPD  T+N+LI+   + G V     ++  +
Sbjct: 159 TLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 P  VTF S++K LC   R  +A  +F  +       DV ++N LI G CR G  
Sbjct: 219 ANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEV 278

Query: 212 IVALNLFEEMANGN------------GEF-----------------GVVCEPDAITYSTI 242
             A+  ++EM                G F                 G+   PD + Y+ +
Sbjct: 279 EEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMV 338

Query: 243 IDGLCKEAGSAN--------FLGFSCMASF----SALNKMAFYFPLVRVQCLCLN----- 285
           I G C+ AGS +         +G  C+       + LN +     L+  + L LN     
Sbjct: 339 IGGFCR-AGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEEL-LNEMKER 396

Query: 286 --------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                   F  LI G C+    + A +LF +L    L P+VV YN LI G+C  G + + 
Sbjct: 397 GVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKA 456

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   L+  +++  +FP+  TY+ILI+  C+ G+V   F     ++     P+ +T+
Sbjct: 457 NE------LWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTY 510

Query: 398 TSLIK 402
            S+IK
Sbjct: 511 NSIIK 515



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 42/210 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +AL +FD +L+ R  RP V ++N L   + +         L+  ++   +FP+  TY+I
Sbjct: 419 EKALQLFDTLLHQR-LRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSI 477

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL---- 186
           LI+  C+ G+V   F  L  ++     P+ +T+ S+IK  C    + +      K+    
Sbjct: 478 LIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDN 537

Query: 187 -------------------------RVFG------CELDVFTYNTLINGLCRTGHTIVAL 215
                                     VF        + D  TYN +ING    G+   A 
Sbjct: 538 ILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAG 597

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
            +F++M    G  G+  EPD  TY ++I+G
Sbjct: 598 RVFKKM----GASGI--EPDRYTYMSLING 621



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 1/153 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA    D M++ + + P + ++N +     ++ +        +++    + PD  T+N 
Sbjct: 489 EEAFGFLDEMVS-KGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNT 547

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ + K   +   F V   + +    PDAVT+  +I     +  + EA  +F K+   G
Sbjct: 548 LIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASG 607

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
            E D +TY +LING    G++  A  L +EM +
Sbjct: 608 IEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMH 640



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 36/73 (49%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   ++N++    ++  + +    +FK++  +G+ PDRYTY  LIN     G     F 
Sbjct: 574 QPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQ 633

Query: 147 VLGRILRSCFTPD 159
           +   ++   F PD
Sbjct: 634 LHDEMMHRGFAPD 646



 Score = 41.2 bits (95), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
           +A E ++ +  +    N  T NI++   C   + D+    +TV      +    +FPD+ 
Sbjct: 140 LAEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKA---DTVI---SEMEKRCVFPDVV 193

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           T+N+LI+   + G V +   +   +      P  VTF S++K L
Sbjct: 194 THNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGL 237


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 151/319 (47%), Gaps = 26/319 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   ++N    CL +  H    L +   +   G  PD +TYN +INC  K G +     
Sbjct: 297 EPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKG 356

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++ +++     PD  TF +LI  LC+++R+ EA  L  +L V G   DV+T+N LIN LC
Sbjct: 357 IVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALC 416

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G   + + LFEEM +        C PD +TY+ +ID LC      N L          
Sbjct: 417 KVGDPHLGIRLFEEMKSSG------CAPDEVTYNILIDHLCSMGKLVNALDL-------- 462

Query: 267 LNKMAFYF-PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           L +M     P   V      +  +ID LCK  +++ A E+F  +   G+  + VT+N LI
Sbjct: 463 LKEMESNGCPRSTV-----TYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLI 517

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC   ++D+         L +++   GL P   TYN ++  +CK G +     I   +
Sbjct: 518 DGLCKAKRIDDATE------LIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETM 571

Query: 386 LPSCFTPDAVTFTSLIKIL 404
             + F  D VT+ +LI  L
Sbjct: 572 TANGFEIDVVTYGTLINGL 590



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 142/317 (44%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T+F  L     +    +  L +  ++  TG  P R T N+LIN +CKMGRV      
Sbjct: 228 PDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGY 287

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + + +   F PD VT+ + +  LC    +  A  +   +   G + DVFTYNT+IN L +
Sbjct: 288 IQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSK 347

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  +  +M +        C PD  T++T+I  LC +      L  +   +   L
Sbjct: 348 NGELDEAKGIVNQMVDRG------CLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGL 401

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +   + F +            LI+ LCK+    +   LF+ +  +G  P+ VTYNILI  
Sbjct: 402 SPDVYTFNI------------LINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDH 449

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC+ G++           L K + S G      TYN +I+  CK  R+     +F ++  
Sbjct: 450 LCSMGKL------VNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDA 503

Query: 388 SCFTPDAVTFTSLIKIL 404
              +  AVTF +LI  L
Sbjct: 504 HGISRSAVTFNTLIDGL 520



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 149/335 (44%), Gaps = 26/335 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +    LN    +     +N L   LA+      + S++  +   G+ PD  T N 
Sbjct: 141 DDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNT 200

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   C+  +V    ++L  +      PD  TFT+L++    E  I  A  + TK+   G
Sbjct: 201 LIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETG 260

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFE-EMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           C     T N LING C+ G    AL   + E+A+G        EPD +TY+T +  LC+ 
Sbjct: 261 CSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADG-------FEPDQVTYNTFVHCLCQN 313

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              ++ L    +      +   F +  V + CL  N            +L  A+ +   +
Sbjct: 314 GHVSHALKVMDLMLQEGHDPDVFTYNTV-INCLSKN-----------GELDEAKGIVNQM 361

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G +P+  T+N LI  LC+  +++E         L + L   GL PD+YT+NILIN  
Sbjct: 362 VDRGCLPDTTTFNTLIVALCSQNRLEE------ALDLARELTVKGLSPDVYTFNILINAL 415

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           CK+G    G  +F  +  S   PD VT+  LI  L
Sbjct: 416 CKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHL 450



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 145/328 (44%), Gaps = 31/328 (9%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L ++   P V +FNIL   L K       + LF+ +  +G  PD  TYNILI+  C MG+
Sbjct: 396 LTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGK 455

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           + +   +L  +  +      VT+ ++I  LC + RI EA  +F ++   G      T+NT
Sbjct: 456 LVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNT 515

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG---SANFLG 257
           LI+GLC+      A  L E+M           +P  ITY++I+   CK+     +A+ L 
Sbjct: 516 LIDGLCKAKRIDDATELIEQMVKEG------LQPSNITYNSILTHYCKQGDLKKAADIL- 568

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
                    +    F   +V        +  LI+GLCK  + ++A +L + +   G+ P 
Sbjct: 569 -------ETMTANGFEIDVV-------TYGTLINGLCKAGRTQVALKLLRGMRIKGIRPT 614

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR-VS 376
              YN +I+ L     + +         LF+ +   G  PD  TY I+    C+ G  + 
Sbjct: 615 PKAYNPVIQSLFRRNNLRD------ALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIK 668

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             F     ++   F P+  +F  L + L
Sbjct: 669 EAFDFLVEMVNKGFMPEFSSFRMLAEGL 696



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 112/286 (39%), Gaps = 25/286 (8%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P R  Y  +I      G       ++  + R      A    S ++      R  +A  L
Sbjct: 87  PSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDL 146

Query: 183 F-TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
              +L  FG + D   YN L+N L         + L E + N   + G+  +PD +T +T
Sbjct: 147 VRNQLNTFGVQADTAVYNHLLNVLAEGSR----MKLLESVYNEMTDRGI--QPDVVTLNT 200

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +I  LC+              +   L +M+ +     V      F  L+ G  +   ++ 
Sbjct: 201 LIKALCR--------AHQVRTAVLMLEEMSSH----AVAPDETTFTTLMQGFIEEGSIEA 248

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  +   +   G  P  VT N+LI G C  G++++   Y       ++  + G  PD  T
Sbjct: 249 ALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGY------IQKEIADGFEPDQVT 302

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           YN  ++C C+ G VS    +   +L     PD  T+ ++I  L  N
Sbjct: 303 YNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKN 348


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 33/320 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N++     K    +  LS+  R++++   PD  TYN ++   C  G++     V
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L R+L R C+ PD +T+T LI+  C +S + +A  L  ++R  GC  DV TYN L+NG+C
Sbjct: 227 LDRMLQRDCY-PDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A+    +M +        C+P+ IT++ I+  +C             M +   
Sbjct: 286 KEGRLDEAIKFLNDMPSSG------CQPNVITHNIILRSMCSTG--------RWMDAEKL 331

Query: 267 LNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           L  M    + P V      + F  LI+ LC+   L  A ++ + +P+ G  PN ++YN L
Sbjct: 332 LADMLRKGFSPSV------VTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPL 385

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + G C + +MD    Y       +R+ S G +PD+ TYN ++   CK G+V     I  +
Sbjct: 386 LHGFCKEKKMDRAIEY------LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           +     +P  +T+ ++I  L
Sbjct: 440 LSSKGCSPVLITYNTVIDGL 459



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 148/320 (46%), Gaps = 30/320 (9%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P   P T+    F  + KT+    +L +   L  +G  PD  TYN++I+ +CK G +++ 
Sbjct: 135 PDIIPCTTLIRGFCRMGKTRKAAKILEV---LEGSGAVPDVITYNVMISGYCKAGEINNA 191

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             VL R+     +PD VT+ ++++ LC   ++ +A  +  ++    C  DV TY  LI  
Sbjct: 192 LSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEA 248

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
            CR      A+ L +EM +        C PD +TY+ +++G+CKE      + F      
Sbjct: 249 TCRDSGVGQAMKLLDEMRDRG------CTPDVVTYNVLVNGICKEGRLDEAIKF------ 296

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             LN M    P    Q   +    ++  +C   +   A +L   + R G  P+VVT+NIL
Sbjct: 297 --LNDM----PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNIL 350

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I  LC  G +           + +++   G  P+  +YN L++ FCK  ++        R
Sbjct: 351 INFLCRKGLLGR------AIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           ++     PD VT+ +++  L
Sbjct: 405 MVSRGCYPDIVTYNTMLTAL 424



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 147/332 (44%), Gaps = 29/332 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ V D ML  R   P V ++ IL     +       + L   +   G  PD  TYN+L
Sbjct: 222 QAMEVLDRMLQ-RDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVL 280

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N  CK GR+      L  +  S   P+ +T   +++ +C+  R M+A  L   +   G 
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              V T+N LIN LCR G    A+++ E+M          C+P++++Y+ ++ G CKE  
Sbjct: 341 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHG------CQPNSLSYNPLLHGFCKEKK 394

Query: 252 SANFLGFSCMASFSALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
               + +        L +M     +P +      + +  ++  LCK  K++ A E+   L
Sbjct: 395 MDRAIEY--------LERMVSRGCYPDI------VTYNTMLTALCKDGKVEDAVEILNQL 440

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G  P ++TYN +I GL   G+  +         L   + +  L PD  TY+ L+   
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGK------AIKLLDEMRAKDLKPDTITYSSLVGGL 494

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + G+V      F         P+AVTF S++
Sbjct: 495 SREGKVDEAIKFFHEFERMGVRPNAVTFNSIM 526



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 163/364 (44%), Gaps = 37/364 (10%)

Query: 52  FLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
            ++  C+ SG G        +A+ + D M + R   P V ++N+L   + K    D  + 
Sbjct: 245 LIEATCRDSGVG--------QAMKLLDEMRD-RGCTPDVVTYNVLVNGICKEGRLDEAIK 295

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
               +  +G  P+  T+NI++   C  GR      +L  +LR  F+P  VTF  LI  LC
Sbjct: 296 FLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
            +  +  A  +  K+   GC+ +  +YN L++G C+      A+   E M +        
Sbjct: 356 RKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG------ 409

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY--FPLVRVQCLCLNFLCL 289
           C PD +TY+T++  LCK+    +        +   LN+++     P++      + +  +
Sbjct: 410 CYPDIVTYNTMLTALCKDGKVED--------AVEILNQLSSKGCSPVL------ITYNTV 455

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           IDGL K  K   A +L   +    L P+ +TY+ L+ GL  +G++DE   +   F  F+R
Sbjct: 456 IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKF---FHEFER 512

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409
           +   G+ P+  T+N ++   CK  +          ++     P   ++T LI+ L     
Sbjct: 513 M---GVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGM 569

Query: 410 FRQV 413
            ++ 
Sbjct: 570 AKEA 573



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 139/317 (43%), Gaps = 39/317 (12%)

Query: 98  GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL--------INCFCKMGRVSHGFVVLG 149
           G   + + +DT+ S     N  G F    +  +L        +    + G +  GF  L 
Sbjct: 67  GLNGRAQKFDTLASGHSNSNGNGHFSSANSSFVLEDVESNNHLRQLVRTGELEEGFKFLE 126

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     PD +  T+LI+  C   +  +AA +   L   G   DV TYN +I+G C+ G
Sbjct: 127 NMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAG 186

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               AL++ + M+           PD +TY+TI+  LC               +   L++
Sbjct: 187 EINNALSVLDRMS---------VSPDVVTYNTILRSLCDSG--------KLKQAMEVLDR 229

Query: 270 MAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           M     +P V      + +  LI+  C+ S +  A +L   +   G  P+VVTYN+L+ G
Sbjct: 230 MLQRDCYPDV------ITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNG 283

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           +C +G++DE   +         + S+G  P++ T+NI++   C  GR      +   +L 
Sbjct: 284 ICKEGRLDEAIKF------LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLR 337

Query: 388 SCFTPDAVTFTSLIKIL 404
             F+P  VTF  LI  L
Sbjct: 338 KGFSPSVVTFNILINFL 354



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 31/252 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FNIL   L +       + + +++   G  P+  +YN L++ FCK  ++      
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L R++ R C+ PD VT+ +++  LC + ++ +A  +  +L   GC   + TYNT+I+GL 
Sbjct: 402 LERMVSRGCY-PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLA 460

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-------S 259
           + G T  A+ L +EM   +       +PD ITYS+++ GL +E      + F        
Sbjct: 461 KAGKTGKAIKLLDEMRAKD------LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLC----------------LIDGLCKISKLKIAR 303
              +    N +       R     ++FL                 LI+GL      K A 
Sbjct: 515 VRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEAL 574

Query: 304 ELFQSLPRAGLM 315
           EL   L   GLM
Sbjct: 575 ELLNELCNKGLM 586


>gi|222640196|gb|EEE68328.1| hypothetical protein OsJ_26607 [Oryza sativa Japonica Group]
          Length = 461

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 155/316 (49%), Gaps = 27/316 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLT---GLFPDRYTYNILINCFCKMGRVSHGFV 146
           + S N     +A+      V S F R+  +    + P  +TY ILI C C+ GR+  GF 
Sbjct: 61  IRSLNRALAAVARDSPAAAV-SGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFA 119

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKLRVFGCELDVFTYNTLINGL 205
            LG +++  +  + + FT L+K LCAE R   A  +   ++   GC   VF+YN L+ GL
Sbjct: 120 GLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGL 179

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C    +  AL L   MA+  G+    C PD ++YSTIIDGL KE  S          ++S
Sbjct: 180 CHESRSQEALELLHMMADDGGD----CPPDVVSYSTIIDGLFKEGDSDK--------AYS 227

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             ++M     L  V    + +  ++  LCK   +  A ++   + + G+MP+ +TYN ++
Sbjct: 228 TYHEMLERGILPDV----VTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIV 283

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C+ GQ  E         + +++ S G+ PD  TY  L++  CK GR      I   +
Sbjct: 284 HGYCSSGQSKE------AIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSM 337

Query: 386 LPSCFTPDAVTFTSLI 401
           +     P+ +T+++L+
Sbjct: 338 IKRGLKPNVITYSTLL 353



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 7/176 (3%)

Query: 71  NEALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
            EAL +   M +     PP V S++ +   L K    D   S +  +   G+ PD  TYN
Sbjct: 186 QEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYN 245

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            ++   CK   +     VL R++++   PD +T+ S++   C+  +  EA  +  K+   
Sbjct: 246 TIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSD 305

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           G E D  TY +L++ LC+ G  I A  + + M           +P+ ITYST++ G
Sbjct: 306 GVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRG------LKPNVITYSTLLHG 355



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 6/171 (3%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGD      ++A   +  ML  R   P V ++N +   L K +  D  + +  R+   G+
Sbjct: 219 EGD-----SDKAYSTYHEMLE-RGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGV 272

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TYN +++ +C  G+      +L ++      PDAVT+TSL+  LC   R +EA  
Sbjct: 273 MPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARK 332

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           +   +   G + +V TY+TL++G    G  +   +L + M N   +    C
Sbjct: 333 ILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMQNEAAKINSGC 383



 Score = 45.1 bits (105), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           F    R +   + P L+TY ILI C C+ GR+  GF   G ++   +  + + FT L+K 
Sbjct: 83  FNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKS 142

Query: 404 L 404
           L
Sbjct: 143 L 143


>gi|296087920|emb|CBI35203.3| unnamed protein product [Vitis vinifera]
          Length = 394

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/376 (29%), Positives = 167/376 (44%), Gaps = 68/376 (18%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++AL  F  ML+M P  PP+  F  L   +AK KHY TVLSL K+++  G+ PD YT 
Sbjct: 45  TLDDALSSFHRMLHMHPP-PPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTL 103

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR- 187
            I+IN FC + RV     VL +IL+    PD  TFT+L++ LC   +I EA  +F K+  
Sbjct: 104 TIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVG 163

Query: 188 ------------VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
                         G   D+FTYN+LI+ LC          L  EM            P+
Sbjct: 164 EGFQPNPNLIMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSK------IMPN 217

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
            ++ + ++D LCKE               +  + +        V+   + +  L+DG C 
Sbjct: 218 VVSLNIVVDALCKE------------GKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCL 265

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
            S++  A ++F  + R G + NVV+YN LI                    LF  + + G 
Sbjct: 266 RSEMDEAVKVFDMMVRNGCVCNVVSYNTLINA------------------LFNEMVACGQ 307

Query: 356 FPDLYTYNILINCFCKIGRVSSGFV-----------IFGRILPSCFTPDAVTFTSLIKIL 404
            P+L TY+IL++  CK  R++               +F  + P    PD  T   +I+ L
Sbjct: 308 IPNLVTYSILLDYLCKNHRLAEAMALLKAIEGTARDLFSNLAPRGLQPDVWTHNIMIRGL 367

Query: 405 -------EINSFFRQV 413
                  E +  FR++
Sbjct: 368 CKRGLLDEASKLFREM 383


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 164/342 (47%), Gaps = 34/342 (9%)

Query: 71  NEALCVFD-YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL------TGLFP 123
           ++AL +FD  +L+ RP+   V + N L   +++ K   +      R N         + P
Sbjct: 25  HDALKLFDELLLHARPA--SVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAP 82

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA-AAL 182
           D  TY+I+I CFC++GR+  GF   G IL++ +  D +    L+K LC   R+ EA   L
Sbjct: 83  DCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVL 142

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             ++   GC L V +YNTL+ GLC       A  L   M +G       C PD ++Y+ +
Sbjct: 143 LRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDS---SCSPDVVSYNIV 199

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           I+G   E                 ++K    F  + V    + +  +IDGLCK  ++  A
Sbjct: 200 INGFFNEG---------------QVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRA 244

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            ++FQ +   G+ PN VTYN +I GLC   ++D  +       +F+++   G+ P   TY
Sbjct: 245 EDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEG------VFQKMVDKGVKPSNVTY 298

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           N +I+  CK   V     +F +++     PD VT+ ++I  L
Sbjct: 299 NTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGL 340



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 155/331 (46%), Gaps = 35/331 (10%)

Query: 72  EALCVFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           EA  +   M++ + S   P V S+NI+          D   SLF  +   G+ PD  TYN
Sbjct: 173 EARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYN 229

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +I+  CK   V     V  +++     P+ VT+ ++I  LC    +  A  +F K+   
Sbjct: 230 TIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDK 289

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G +    TYNT+I+GLC+      A  +F++M     + GV  +PD +TY+TIIDGLCK 
Sbjct: 290 GVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMI----DRGV--KPDHVTYNTIIDGLCKA 343

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLV---RVQCLCLNFLCLIDGLCKISKLKIARELF 306
                           A++K    F  +    V+   L +  +IDGLCK   +  A  +F
Sbjct: 344 ---------------QAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVF 388

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           Q +   G+ PN  TYN LI G  + GQ      +E V    K +++  L PD++TY +L+
Sbjct: 389 QQMIDKGVKPNNGTYNCLIHGYLSTGQ------WEEVVQRIKEMSAHDLEPDVFTYGLLL 442

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           +  CK G+ +    +F  ++     P    +
Sbjct: 443 DYLCKNGKCNEARSLFDSMIRKGIKPSVTIY 473



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 158/366 (43%), Gaps = 58/366 (15%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +   L K +  D    +F+++   G+ P+  TYN +I+  CK   V     V
Sbjct: 223 PDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGV 282

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++     P  VT+ ++I  LC    +  A  +F ++   G + D  TYNT+I+GLC+
Sbjct: 283 FQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCK 342

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA----------------- 250
                 A  +F++M +     GV  +PD +TY+ IIDGLCK                   
Sbjct: 343 AQAIDKAEGVFQQMIDK----GV--KPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGV 396

Query: 251 ----GSANFL--GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
               G+ N L  G+     +  + +         ++     +  L+D LCK  K   AR 
Sbjct: 397 KPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARS 456

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY------------------------ 340
           LF S+ R G+ P+V  Y I++ G    G + E                            
Sbjct: 457 LFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYA 516

Query: 341 -----ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
                + V  +F ++   GL P++ TY  LI+  CK+GRV    + F +++    TP+ V
Sbjct: 517 KRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNV 576

Query: 396 TFTSLI 401
            F SL+
Sbjct: 577 VFNSLV 582



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 147/344 (42%), Gaps = 57/344 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    FN +    AK    D V+ +F ++   GL P+  TY  LI+  CK+GRV    + 
Sbjct: 503 PNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQ 562

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++    TP+ V F SL+  LC   +  +   LF ++   G   D+  +NT++  LC+
Sbjct: 563 FNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCK 622

Query: 208 TGHTIVALNLFEEMANGNGEFGVVC---EPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
            G  + A  L + M         VC   +PD I+Y+T+IDG C               + 
Sbjct: 623 EGRVMEARRLIDSM---------VCMGLKPDVISYNTLIDGHC--------FASRMDEAV 665

Query: 265 SALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
             L+ M  A   P +      +++  L+ G CK  ++  A  LF+ + R G+ P V TYN
Sbjct: 666 KLLDGMVSAGLKPNI------VSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYN 719

Query: 323 ILIRGLCNDGQMDETKH-----------------------------YETVFLLFKRLNST 353
            ++ GL   G+  E +                              ++  F +F+ L S 
Sbjct: 720 TILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSM 779

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
            L  D+ T+NI+I+   K GR      +F  I  +   P  VT+
Sbjct: 780 DLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTY 823



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 145/318 (45%), Gaps = 25/318 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  +FD M+  +  +P VT + I+     K      +  L   +   G+ P+   +N 
Sbjct: 452 NEARSLFDSMIR-KGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNT 510

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I  + K   +     +  ++ +   +P+ VT+ +LI  LC   R+ +A   F ++   G
Sbjct: 511 VICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEG 570

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +   +N+L+ GLC          LF EM N          PD + ++T++  LCKE 
Sbjct: 571 VTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQG------IRPDIVFFNTVLCNLCKEG 624

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                     M +   ++ M      + ++   +++  LIDG C  S++  A +L   + 
Sbjct: 625 --------RVMEARRLIDSMV----CMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMV 672

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            AGL PN+V+YN L+ G C  G++D        + LF+ +   G+ P + TYN ++N   
Sbjct: 673 SAGLKPNIVSYNTLLHGYCKAGRID------NAYCLFREMLRKGVTPGVETYNTILNGLF 726

Query: 371 KIGRVSSGFVIFGRILPS 388
           + GR S    ++  ++ S
Sbjct: 727 RSGRFSEARELYVNMIKS 744



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 144/328 (43%), Gaps = 25/328 (7%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F  MLN +  RP +  FN +   L K         L   +   GL PD  +YN LI+  
Sbjct: 597 LFLEMLN-QGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGH 655

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C   R+     +L  ++ +   P+ V++ +L+   C   RI  A  LF ++   G    V
Sbjct: 656 CFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGV 715

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            TYNT++NGL R+G    A  L+  M     +   +C     TYS I+DG CK     N 
Sbjct: 716 ETYNTILNGLFRSGRFSEARELYVNMIKSR-KLWSIC-----TYSIILDGFCK-----NN 764

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                   F +L  M     ++        F  +IDGL K  + + A +LF ++P  GL+
Sbjct: 765 CFDEAFKIFQSLCSMDLQLDII-------TFNIMIDGLFKGGRKEDAMDLFAAIPANGLV 817

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+VVTY ++   L  +G ++E         LF  +  +G  P+ +  N LI      G +
Sbjct: 818 PSVVTYRLIAENLIEEGSLEELD------CLFSVMEKSGTAPNSHMLNALIRKLLDRGEI 871

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKI 403
                   ++    F+ +A T + LI +
Sbjct: 872 PRAGAYLSKLDEKNFSLEASTTSMLISL 899



 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 7/149 (4%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           ++LC  D  L+       + +FNI+   L K    +  + LF  +   GL P   TY ++
Sbjct: 774 QSLCSMDLQLD-------IITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLI 826

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
                + G +     +   + +S   P++    +LI+ L     I  A A  +KL     
Sbjct: 827 AENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNF 886

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEE 220
            L+  T + LI+   R  +   A +L E+
Sbjct: 887 SLEASTTSMLISLFSREEYQQHAKSLPEK 915


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 163/330 (49%), Gaps = 31/330 (9%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VF  ML  + S P V ++NIL        + D  L+LF ++   G  P+  TYN LI+ +
Sbjct: 192 VFKEMLESQVS-PNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGY 250

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK+ ++  GF +L  +      P+ +++  +I  LC E R+ E + + T++   G  LD 
Sbjct: 251 CKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDE 310

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            TYNTLI G C+ G+   AL +  EM       G+   P  ITY+++I  +CK AG+   
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEML----RHGLT--PSVITYTSLIHSMCK-AGN--- 360

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRA 312
                      +N+   +   +RV+ LC N   +  L+DG  +   +  A  + + +   
Sbjct: 361 -----------MNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDN 409

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  P+VVTYN LI G C  G+M      E    + + +   GL PD+ +Y+ +++ FC+ 
Sbjct: 410 GFSPSVVTYNALINGHCVTGKM------EDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRS 463

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             V     +   ++     PD +T++SLI+
Sbjct: 464 YDVDEALRVKREMVEKGIKPDTITYSSLIQ 493



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 150/338 (44%), Gaps = 20/338 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  V   M N     P V ++N L      T   +  +++ + +   GL PD  +Y+ 
Sbjct: 397 NEAYRVLREM-NDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYST 455

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++ FC+   V     V   ++     PD +T++SLI+  C + R  EA  L+ ++   G
Sbjct: 456 VLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG 515

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D FTY  LIN  C  G    AL L  EM     E GV+  PD +TYS +I+GL K++
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMV----EKGVL--PDVVTYSVLINGLNKQS 569

Query: 251 GS--ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF---LCLIDGLCKISKLKIAREL 305
            +  A  L        S  + +  Y  L+   C  + F   + LI G C    +  A ++
Sbjct: 570 RTREAKRLLLKLFYEESVPSDVT-YHTLIE-NCSNIEFKSVVSLIKGFCMKGMMTEADQV 627

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F+S+      P+   YNI+I G C  G +         + L+K +  +G      T   L
Sbjct: 628 FESMLGKNHKPDGTAYNIMIHGHCRAGDI------RKAYTLYKEMVKSGFLLHTVTVIAL 681

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           +    K G+V+    +   +L SC   +A     L++I
Sbjct: 682 VKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEI 719



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 152/365 (41%), Gaps = 47/365 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A+   D M  +R   P   ++  L    ++  + +    + + +N  G  P   TYN 
Sbjct: 362 NRAMEFLDQM-RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNA 420

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  C  G++     VL  +     +PD V++++++   C    + EA  +  ++   G
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D  TY++LI G C    T  A +L+EEM        V   PD  TY+ +I+  C E 
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEM------LRVGLPPDEFTYTALINAYCMEG 534

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L           N+M     L  V    + +  LI+GL K S+ + A+ L   L 
Sbjct: 535 DLEKALQLH--------NEMVEKGVLPDV----VTYSVLINGLNKQSRTREAKRLLLKLF 582

Query: 311 RAGLMPNVVTYNI---------------LIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
               +P+ VTY+                LI+G C  G M E         +F+ +     
Sbjct: 583 YEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQ------VFESMLGKNH 636

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL-------EINS 408
            PD   YNI+I+  C+ G +   + ++  ++ S F    VT  +L+K L       E+NS
Sbjct: 637 KPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNS 696

Query: 409 FFRQV 413
               V
Sbjct: 697 VIVHV 701



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 18/129 (13%)

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
           L LID    I  L  A          G MP V++YN ++     D  +   ++      +
Sbjct: 147 LSLIDKALSIVHLAQAH---------GFMPGVLSYNAVL-----DATIRSKRNISFAENV 192

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----K 402
           FK +  + + P+++TYNILI  FC  G +     +F ++      P+ VT+ +LI    K
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252

Query: 403 ILEINSFFR 411
           + +I+  F+
Sbjct: 253 LRKIDDGFK 261


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 153/334 (45%), Gaps = 25/334 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F+ ML    S P V ++NIL     K +       L + +   G  P+  TYN 
Sbjct: 288 DEAVVLFNQMLENSCS-PDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNT 346

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++   K G+    F +   +LR    P   TF  +I   C   ++  A  LF  +   G
Sbjct: 347 LMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRG 406

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  D++TYN +I+G CR      A  L E M          C PD +TY++I+ GLCK +
Sbjct: 407 CLPDIYTYNIMISGACRANRIDDARQLLERMTEAG------CPPDVVTYNSIVSGLCKAS 460

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                        +  L    ++  +V    L       IDGLCK  +L  A +L + + 
Sbjct: 461 QVDE-----AYEVYEVLRNGGYFLDVVTCSTL-------IDGLCKSRRLDDAEKLLREME 508

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R G  P+VV Y ILI G C   Q+D++         F  +   G  P + TY+I+I+  C
Sbjct: 509 RNGSAPDVVAYTILIHGFCKADQLDKS------LAFFSEMLDKGCVPTVITYSIVIDKLC 562

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K  RV  G ++   +L    TPDA+ +TS+I  L
Sbjct: 563 KSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGL 596



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 165/339 (48%), Gaps = 34/339 (10%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  R  +P   +FN++     K    D    LF+ +   G  PD YTYNI+I+  C+  
Sbjct: 366 MMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRAN 425

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           R+     +L R+  +   PD VT+ S++  LC  S++ EA  ++  LR  G  LDV T +
Sbjct: 426 RIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCS 485

Query: 200 TLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           TLI+GLC++     A  L  EM  NG+        PD + Y+ +I G CK    A+ L  
Sbjct: 486 TLIDGLCKSRRLDDAEKLLREMERNGSA-------PDVVAYTILIHGFCK----ADQLDK 534

Query: 259 SCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
           S          +AF+  ++   C+   + +  +ID LCK ++++    L +++   G+ P
Sbjct: 535 S----------LAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTP 584

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           + + Y  +I GLC      ++  Y+  + L+K +  TG  P + TYN+L++  CK+ R+ 
Sbjct: 585 DAIVYTSVIDGLC------KSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLD 638

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI----KILEINSFFR 411
               +   +      PD VT+ S+     K  E +  FR
Sbjct: 639 EAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFR 677



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 167/392 (42%), Gaps = 71/392 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  FD+       +    + N L     + K       LFK        PD  TY+ 
Sbjct: 113 DKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYST 172

Query: 131 LINCFCKM-----------------------------------GRVSHGFVVLGRILRSC 155
           LIN FCK                                    GRV    V    + R+C
Sbjct: 173 LINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNC 232

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             P  +T+T L+  LC  +RI +A+ +   +   GC  +V TYNTLING C+ G+   A+
Sbjct: 233 -APSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAV 291

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN-------FLGFSCMASFSALN 268
            LF +M   +      C PD  TY+ +IDG CK+    +        + + C  +F   N
Sbjct: 292 VLFNQMLENS------CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYN 345

Query: 269 KM------------AFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSLPRA 312
            +            AF    + ++  C      F  +ID  CK+ +L +A ELFQ +   
Sbjct: 346 TLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDR 405

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G +P++ TYNI+I G C   ++D+ +       L +R+   G  PD+ TYN +++  CK 
Sbjct: 406 GCLPDIYTYNIMISGACRANRIDDARQ------LLERMTEAGCPPDVVTYNSIVSGLCKA 459

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +V   + ++  +    +  D VT ++LI  L
Sbjct: 460 SQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGL 491



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 102/252 (40%), Gaps = 53/252 (21%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           S P V ++ IL     K    D  L+ F  +   G  P   TY+I+I+  CK  RV  G 
Sbjct: 512 SAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGC 571

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           ++L  +L    TPDA+ +TS+I  LC      EA  L+  ++  GC   V TYN L++ L
Sbjct: 572 MLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKL 631

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+      A++L E M +        C PD +TY+++ D                     
Sbjct: 632 CKVSRLDEAIHLLEVMESDG------CLPDTVTYNSVFD--------------------- 664

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                                     G  K ++   A  LFQ++   G  P    Y++L+
Sbjct: 665 --------------------------GFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLL 698

Query: 326 RGLCNDGQMDET 337
             L  + +MD+ 
Sbjct: 699 TKLVAEEKMDQA 710



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 60/144 (41%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P    +  +   L K+  YD    L+K +  TG  P   TYN+L++  CK+ R+  
Sbjct: 580 RGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDE 639

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +L  +      PD VT+ S+       +   +A  LF  ++  GC    F Y+ L+ 
Sbjct: 640 AIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLT 699

Query: 204 GLCRTGHTIVALNLFEEMANGNGE 227
            L        A+ ++EE      +
Sbjct: 700 KLVAEEKMDQAMEIWEEALEAGAD 723



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 49/114 (42%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N+L   L K    D  + L + +   G  PD  TYN + + F K       F +
Sbjct: 619 PTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRL 678

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
              +     +P    ++ L+  L AE ++ +A  ++ +    G ++D     TL
Sbjct: 679 FQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVDPEISRTL 732


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 155/316 (49%), Gaps = 27/316 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLT---GLFPDRYTYNILINCFCKMGRVSHGFV 146
           + S N     +A+      V S F R+  +    + P  +TY ILI C C+ GR+  GF 
Sbjct: 61  IRSLNRALAAVARDSPAAAV-SGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFA 119

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKLRVFGCELDVFTYNTLINGL 205
            LG +++  +  + + FT L+K LCAE R   A  +   ++   GC   VF+YN L+ GL
Sbjct: 120 GLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGL 179

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C    +  AL L   MA+  G+    C PD ++YSTIIDGL KE  S          ++S
Sbjct: 180 CHESRSQEALELLHMMADDGGD----CPPDVVSYSTIIDGLFKEGDSDK--------AYS 227

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             ++M     L  V    + +  ++  LCK   +  A ++   + + G+MP+ +TYN ++
Sbjct: 228 TYHEMLERGILPDV----VTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIV 283

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C+ GQ  E         + +++ S G+ PD  TY  L++  CK GR      I   +
Sbjct: 284 HGYCSSGQSKEA------IGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSM 337

Query: 386 LPSCFTPDAVTFTSLI 401
           +     P+ +T+++L+
Sbjct: 338 IKRGLKPNVITYSTLL 353



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 122/271 (45%), Gaps = 25/271 (9%)

Query: 71  NEALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
            EAL +   M +     PP V S++ +   L K    D   S +  +   G+ PD  TYN
Sbjct: 186 QEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYN 245

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            ++   CK   +     VL R++++   PD +T+ S++   C+  +  EA  +  K+   
Sbjct: 246 TIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSD 305

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G E D  TY +L++ LC+ G  I A  + + M           +P+ ITYST++ G    
Sbjct: 306 GVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRG------LKPNVITYSTLLHGY--- 356

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPL-VR--VQCLCLNFLCLIDGLCKISKLKIARELF 306
                       A+  AL +M     L VR  +Q     F  LI    K   + +A  +F
Sbjct: 357 ------------ATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMFVF 404

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
             + +  L P+VVTY  LI GLC  G++D+ 
Sbjct: 405 SKMRQQRLTPDVVTYGTLIDGLCKSGRVDDA 435



 Score = 45.1 bits (105), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           F    R +   + P L+TY ILI C C+ GR+  GF   G ++   +  + + FT L+K 
Sbjct: 83  FNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKS 142

Query: 404 L 404
           L
Sbjct: 143 L 143


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 155/325 (47%), Gaps = 27/325 (8%)

Query: 83  MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFK-RLNLTGLFPDRYTYNILINCFCKMGRV 141
           +R S   V  +NI+   L +       L +F+  +   G+ P   TYN +IN  CK   +
Sbjct: 38  VRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNEL 97

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
             G  +   +++    PD VT+ +LI  LC    + EA  L   +   GC  +V TY+ L
Sbjct: 98  GAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVL 157

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCE--PDAITYSTIIDGLCKEAGSANFLGFS 259
           INGLC+ G    A  L +EM   +      C+  P+ ITY++ +DGLCK++ +A     +
Sbjct: 158 INGLCKVGRIDEARELIQEMTRKS------CDVLPNIITYNSFLDGLCKQSMTAE----A 207

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
           C    S  +        +RV    + F  LIDGLCK  +   A      +   G +PNVV
Sbjct: 208 CELMRSLRDGS------LRVSPDTVTFSTLIDGLCKCGQTDEA--CNDDMIAGGYVPNVV 259

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TYN L+ GLC   +M      E    + + +   G+ PD+ TY++L++ FCK  RV    
Sbjct: 260 TYNALVNGLCKADKM------ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEAL 313

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            +   +     TP+ VTF S+I  L
Sbjct: 314 ELLHGMASRGCTPNVVTFNSIIDGL 338



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 149/317 (47%), Gaps = 26/317 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +F+ L   L K    D   +    +   G  P+  TYN L+N  CK  ++     +
Sbjct: 223 PDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAM 280

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  ++    TPD +T++ L+   C  SR+ EA  L   +   GC  +V T+N++I+GLC+
Sbjct: 281 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 340

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +  +  A  +  ++ N       +  PD +T++ +I G CK   + NF   S +      
Sbjct: 341 SDRSGEAFQIALQVYN------RMLVPDKVTFNILIAGACK---AGNFEQASALFEEMVA 391

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             M         Q   + F  LIDGLCK  +++ AR++   +   G+ PNVVTYN+L+ G
Sbjct: 392 KNM---------QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHG 442

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G+++E   +       + + S+G  P+  TY  L+   C+  R      +  ++  
Sbjct: 443 LCKSGRIEEPCEF------LEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKS 496

Query: 388 SCFTPDAVTFTSLIKIL 404
             + PD VT+  L+  L
Sbjct: 497 FGWDPDTVTYNILVDGL 513



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 147/319 (46%), Gaps = 28/319 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL--FPDRYTYNILINCFCKMGRVSHGF 145
           P + ++N     L K         L + L    L   PD  T++ LI+  CK G+     
Sbjct: 186 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEA- 244

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
                ++   + P+ VT+ +L+  LC   ++  A A+   +   G   DV TY+ L++  
Sbjct: 245 -CNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAF 303

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+      AL L   MA+        C P+ +T+++IIDGLCK   S    G +   +  
Sbjct: 304 CKASRVDEALELLHGMASRG------CTPNVVTFNSIIDGLCKSDRS----GEAFQIALQ 353

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             N+M     LV  +   + F  LI G CK    + A  LF+ +    + P+V+T+  LI
Sbjct: 354 VYNRM-----LVPDK---VTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALI 405

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC  GQ++  +       +   + + G+ P++ TYN+L++  CK GR+         +
Sbjct: 406 DGLCKAGQVEAARD------ILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEM 459

Query: 386 LPSCFTPDAVTFTSLIKIL 404
           + S   P+++T+ SL+  L
Sbjct: 460 VSSGCVPESMTYGSLVYAL 478



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 135/316 (42%), Gaps = 28/316 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++++L     K    D  L L   +   G  P+  T+N +I+  CK  R    F +
Sbjct: 291 PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQI 350

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++      PD VTF  LI   C      +A+ALF ++     + DV T+  LI+GLC+
Sbjct: 351 ALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCK 410

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A ++ + M N     GV   P+ +TY+ ++ GLCK              S    
Sbjct: 411 AGQVEAARDILDLMGN----LGV--PPNVVTYNVLVHGLCK--------------SGRIE 450

Query: 268 NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
               F   +V   C+   + +  L+  LC+ S+   A +L   L   G  P+ VTYNIL+
Sbjct: 451 EPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILV 510

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GL   G+       E    + + +   G  PD +T+        + G ++    +   +
Sbjct: 511 DGLWKSGKT------EQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVV 564

Query: 386 LPSCFTPDAVTFTSLI 401
           L     PDA T +S++
Sbjct: 565 LAKGMLPDATTCSSIL 580



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 18/218 (8%)

Query: 40  RLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGC 99
           R+ V D+ +    +   CK+            +A  +F+ M+  +  +P V +F  L   
Sbjct: 357 RMLVPDKVTFNILIAGACKAG--------NFEQASALFEEMV-AKNMQPDVMTFGALIDG 407

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L K    +    +   +   G+ P+  TYN+L++  CK GR+      L  ++ S   P+
Sbjct: 408 LCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPE 467

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
           ++T+ SL+  LC  SR  +A  L +KL+ FG + D  TYN L++GL ++G T  A+ + E
Sbjct: 468 SMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLE 527

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
           EM  G G      +PD+ T++    GL +   S N  G
Sbjct: 528 EMV-GKGH-----QPDSFTFAACFGGLHR---SGNLAG 556


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 169/331 (51%), Gaps = 31/331 (9%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           FD ML+     P V ++NIL   L    H    LS+ + +   G  P+  TYN L+  F 
Sbjct: 138 FDSMLS-DGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFF 196

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           + G V     ++G +L     P+ VTF S++  +C   ++ +A  +F ++   G   D  
Sbjct: 197 RAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGV 256

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           +YNTL+ G C+ G +  AL++F EM     + G++  PD +T++++I  +CK AG+  + 
Sbjct: 257 SYNTLVGGYCKAGCSHEALSVFAEMT----QKGIM--PDVVTFTSLIHVMCK-AGNLEW- 308

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAG 313
                 + + + +M       R + L +N   F  LIDG CK   L  A    + + +  
Sbjct: 309 ------AVTLVRQM-------RERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCR 355

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           + P+VV YN LI G C  G+MDE +       L   + + GL PD+ TY+ +I+ +CK  
Sbjct: 356 IKPSVVCYNALINGYCMVGRMDEARE------LLHEMEAKGLKPDVVTYSTIISAYCKNC 409

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              S F +  ++L     PDA+T++SLI++L
Sbjct: 410 DTHSAFELNQQMLEKGVLPDAITYSSLIRVL 440



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 149/338 (44%), Gaps = 59/338 (17%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N L          D    L   +   GL PD  TY+ +I+ +CK       F 
Sbjct: 357 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE 416

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L     PDA+T++SLI+ LC E R+ +A  LF  +   G + D FTY +LI+G C
Sbjct: 417 LNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHC 476

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G+   AL+L ++M       GV+  PD +TYS +I+GL K A               A
Sbjct: 477 KEGNVERALSLHDKMVKA----GVL--PDVVTYSVLINGLSKSA--------------RA 516

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGL---CKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +      F L   + +  N     D L   C+ ++LK                   +   
Sbjct: 517 MEAQQLLFKLYHEEPIPAN--TKYDALMHCCRKAELK-------------------SVLA 555

Query: 324 LIRGLCNDGQMDET-KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           L++G C  G M+E  K Y++  +L +  N  G       Y++LI+  C+ G V       
Sbjct: 556 LLKGFCMKGLMNEADKVYQS--MLDRNWNLDG-----SVYSVLIHGHCRAGNVMKALSFH 608

Query: 383 GRILPSCFTPDAVTFTSLIK-------ILEINSFFRQV 413
            ++L   F P++ +  SLI+       ++E +   +Q+
Sbjct: 609 KQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQL 646



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 112/249 (44%), Gaps = 31/249 (12%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           + P  + + +++  L +++ +  A   F  +   G   +V+TYN LI  LC  GH   AL
Sbjct: 112 YVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEAL 170

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---GSANFLGFSCMASFSALNKMAF 272
           ++  +M       G  C P+ +TY+T++    +     G+   +G               
Sbjct: 171 SILRDMR------GAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGL-------- 216

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                  +   + F  +++G+CK  K++ AR++F  + R GL P+ V+YN L+ G C  G
Sbjct: 217 -------KPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAG 269

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
              E         +F  +   G+ PD+ T+  LI+  CK G +     +  ++       
Sbjct: 270 CSHEA------LSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQM 323

Query: 393 DAVTFTSLI 401
           + VTFT+LI
Sbjct: 324 NEVTFTALI 332


>gi|22128708|gb|AAM92820.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432840|gb|AAP54427.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
          Length = 517

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 157/317 (49%), Gaps = 26/317 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYTYNILINCFCKMGRVSHGFV 146
           + SFN     +A+      V SLF R+   G   + PD  TY+ILI C C+ GR+  GF 
Sbjct: 195 IYSFNRTLTDVARDSPAAAV-SLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFA 253

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKLRVFGCELDVFTYNTLINGL 205
            LG +++  F  +A+TF  L+K LCA+ R  +A  +   ++    C  DVF+   L+ GL
Sbjct: 254 ALGNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGL 313

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C    +  AL L   MA+   + G    PD ++Y+T+I+G  KE  S          ++S
Sbjct: 314 CDENRSQEALELLHMMAD---DRGGGSPPDVVSYTTVINGFFKEGDSDK--------AYS 362

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             ++M       R+    + +  +I  LCK   +  A E+  ++ + G+MP+ +TYN ++
Sbjct: 363 TYHEMLDR----RISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 418

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C+ GQ  E           K++ S G+ P++ TY  L+N  CK GR +    IF  +
Sbjct: 419 HGYCSSGQPKE------AIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSM 472

Query: 386 LPSCFTPDAVTFTSLIK 402
                 PD  T+ +L++
Sbjct: 473 TKRGLEPDIATYRTLLQ 489



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 8/177 (4%)

Query: 71  NEALCVFDYMLNMRP--SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
            EAL +   M + R   S P V S+  +     K    D   S +  +    + P+  TY
Sbjct: 320 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTY 379

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           + +I   CK   +     VL  ++++   PD +T+ S++   C+  +  EA     K+R 
Sbjct: 380 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS 439

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
            G E +V TY +L+N LC+ G    A  +F+ M           EPD  TY T++ G
Sbjct: 440 DGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRG------LEPDIATYRTLLQG 490



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGD      ++A   +  ML+ R S P V +++ +   L K +  D  + +   +   G+
Sbjct: 354 EGD-----SDKAYSTYHEMLDRRIS-PNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGV 407

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TYN +++ +C  G+       L ++      P+ VT+ SL+  LC   R  EA  
Sbjct: 408 MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARK 467

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           +F  +   G E D+ TY TL+ G    G  +    L + M
Sbjct: 468 IFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLM 507



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 24/229 (10%)

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A  +  +L + G    ++++N  +  + R      A++LF  MA    +      PD  T
Sbjct: 179 ARHVLDELPLRGWGASIYSFNRTLTDVARD-SPAAAVSLFNRMARAGAD---EVTPDLCT 234

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           YS +I G C  AG  + LGF   A+   + K  F     RV+ +   F  L+ GLC   +
Sbjct: 235 YSILI-GCCCRAGRLD-LGF---AALGNVIKKGF-----RVEAI--TFAPLLKGLCADKR 282

Query: 299 LKIAREL-FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF- 356
              A ++  + +     MP+V +  IL++GLC     DE +  E + LL    +  G   
Sbjct: 283 TSDAMDIVLRRMTELSCMPDVFSCTILLKGLC-----DENRSQEALELLHMMADDRGGGS 337

Query: 357 -PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            PD+ +Y  +IN F K G     +  +  +L    +P+ VT++S+I  L
Sbjct: 338 PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAAL 386


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 170/343 (49%), Gaps = 31/343 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +F  M+  +P  P V SF+ L   L   KHY +V+SLF+ ++   +    +  +I
Sbjct: 54  DDAFSLFRQMVRTKP-LPSVVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVF 189
           ++N  C M R   GF VL    +     + V F +L++ L AE+++ +A  LF KL R  
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVREN 172

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            CE +   Y T++NGLC+ GHT  A +L   M  G+       +P+   YS +ID  CK+
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGS------TKPNTCIYSIVIDAFCKD 226

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                        + S LN+M        +      +  LID LCK+S+ +  R LF  +
Sbjct: 227 G--------MLDGATSLLNEMK----QKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEM 274

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
               + PNV T+N +I GLC +G++++ +       + + +   G+ PD+ TYN++I+ +
Sbjct: 275 IHLNIYPNVCTFNSVIDGLCKEGKVEDAEE------IMRYMIEKGVDPDVITYNMIIDGY 328

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
              G+V     IF  ++     P+ +++  L     IN + RQ
Sbjct: 329 GLRGQVDRAREIFDSMINKSIEPNIISYNIL-----INGYARQ 366



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 146/352 (41%), Gaps = 59/352 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +++ L   L K   ++ V +LF  +    ++P+  T+N +I+  CK G+V     +
Sbjct: 246 PDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEI 305

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  ++     PD +T+  +I       ++  A  +F  +     E ++ +YN LING  R
Sbjct: 306 MRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYAR 365

Query: 208 T-----------------------------------GHTIVALNLFEEMANGNGEFGVVC 232
                                               G T  A N F+EM +     G + 
Sbjct: 366 QKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSA----GHI- 420

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
            PD  T+ T++ G  K     N L    M+ F  L +        R       +  +IDG
Sbjct: 421 -PDLYTHCTLLGGYFK-----NGLVEEAMSHFHKLERR-------REDTNIQIYTAVIDG 467

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LCK  KL  A   F+ LP  GL P+V+TY  +I G C +G +DE K       + +++  
Sbjct: 468 LCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKD------MLRKMED 521

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            G   D  TYN+++  F +  +VS        I    F+ +A T   L+ I+
Sbjct: 522 NGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMDII 573



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 42/223 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  +FD M+N +   P + S+NIL    A+ K  D  + + + ++  GL P   T N+
Sbjct: 335 DRAREIFDSMIN-KSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNV 393

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVT---------------------------- 162
           L++   ++GR          +L +   PD  T                            
Sbjct: 394 LLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRR 453

Query: 163 -------FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
                  +T++I  LC   ++ +A A F KL + G   DV TY  +I+G C+ G    A 
Sbjct: 454 EDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAK 513

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           ++  +M + NG     C  D  TY+ I+ G  +    +    F
Sbjct: 514 DMLRKMED-NG-----CLADNRTYNVIVRGFLRSNKVSEMKAF 550



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 7/180 (3%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           FD ML+     P + +   L G   K    +  +S F +L       +   Y  +I+  C
Sbjct: 411 FDEMLSA-GHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLC 469

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           K G++        ++      PD +T+T++I   C E  + EA  +  K+   GC  D  
Sbjct: 470 KNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNR 529

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           TYN ++ G  R+          EE+A  +  F      +A T   ++D + ++    N +
Sbjct: 530 TYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSF------EAATVELLMDIIAEDPSLLNMI 583


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 159/320 (49%), Gaps = 33/320 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N+L     KT    + L L  R++++   PD  TYN ++   C  G++     V
Sbjct: 178 PDVITYNVLISGYCKTGEIGSALQLLDRMSVS---PDVVTYNTILRTLCDSGKLKEAMEV 234

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L R + R C+ PD +T+T LI+  C ES + +A  L  ++R  GC+ DV TYN LING+C
Sbjct: 235 LDRQMQRECY-PDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGIC 293

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A+     M +    +G  C+P+ IT++ I+  +C              ++   
Sbjct: 294 KEGRLDEAIRFLNHMPS----YG--CQPNVITHNIILRSMC--------------STGRW 333

Query: 267 LNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           ++   F   ++R  C    + F  LI+ LC+   +  A ++ + +P+ G  PN ++YN L
Sbjct: 334 MDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPL 393

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           +  LC D +M+    Y  + +      S G +PD+ TYN L+   CK G+V     I  +
Sbjct: 394 LHALCKDKKMERAIEYLDIMV------SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 447

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           +     +P  +T+ ++I  L
Sbjct: 448 LGSKGCSPVLITYNTVIDGL 467



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 147/331 (44%), Gaps = 27/331 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ V D  +  R   P V ++ IL     K       + L   +   G  PD  TYN+L
Sbjct: 230 EAMEVLDRQMQ-RECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVL 288

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK GR+      L  +      P+ +T   +++ +C+  R M+A     ++   GC
Sbjct: 289 INGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGC 348

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              V T+N LIN LCR G    A+++ E+M          C P++++Y+ ++  LCK+  
Sbjct: 349 SPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHG------CTPNSLSYNPLLHALCKDKK 402

Query: 252 SANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
               + +   M S          +P +      + +  L+  LCK  K+ +A E+   L 
Sbjct: 403 MERAIEYLDIMVSRGC-------YPDI------VTYNTLLTALCKDGKVDVAVEILNQLG 449

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P ++TYN +I GL   G+ D+         L   +   GL PD+ TY+ L+    
Sbjct: 450 SKGCSPVLITYNTVIDGLSKVGKTDDA------IKLLDEMKGKGLKPDIITYSTLVGGLS 503

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + G+V      F  +      P+A+T+ S++
Sbjct: 504 REGKVDEAIAFFHDLEEMGVKPNAITYNSIM 534



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 148/341 (43%), Gaps = 31/341 (9%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           +L+     P V ++N +   L  +      + +  R      +PD  TY ILI   CK  
Sbjct: 202 LLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKES 261

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V     +L  +      PD VT+  LI  +C E R+ EA      +  +GC+ +V T+N
Sbjct: 262 GVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHN 321

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            ++  +C TG  + A     EM          C P  +T++ +I+ LC++      +G  
Sbjct: 322 IILRSMCSTGRWMDAEKFLAEMIRKG------CSPSVVTFNILINFLCRKG----LIG-- 369

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
              +   L KM    P        L++  L+  LCK  K++ A E    +   G  P++V
Sbjct: 370 --RAIDVLEKM----PQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIV 423

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TYN L+  LC DG++D          +  +L S G  P L TYN +I+   K+G+     
Sbjct: 424 TYNTLLTALCKDGKVD------VAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAI 477

Query: 380 VIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
            +   +      PD +T+++L+       K+ E  +FF  +
Sbjct: 478 KLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDL 518



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 120/268 (44%), Gaps = 31/268 (11%)

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G +  GF  L  ++     PD +  TSLI+ LC   +  +A  +   L   G   DV TY
Sbjct: 124 GELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITY 183

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           N LI+G C+TG    AL L + M+           PD +TY+TI+  LC           
Sbjct: 184 NVLISGYCKTGEIGSALQLLDRMS---------VSPDVVTYNTILRTLCDSG-------- 226

Query: 259 SCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
               +   L++       ++ +C    + +  LI+  CK S +  A +L   +   G  P
Sbjct: 227 KLKEAMEVLDRQ------MQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKP 280

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           +VVTYN+LI G+C +G++DE   +         + S G  P++ T+NI++   C  GR  
Sbjct: 281 DVVTYNVLINGICKEGRLDEAIRF------LNHMPSYGCQPNVITHNIILRSMCSTGRWM 334

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                   ++    +P  VTF  LI  L
Sbjct: 335 DAEKFLAEMIRKGCSPSVVTFNILINFL 362



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 126/286 (44%), Gaps = 29/286 (10%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  PD      LI   CK G+      V+  +  S   PD +T+  LI   C    I  A
Sbjct: 140 GDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSA 199

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L  ++ V     DV TYNT++  LC +G    A+ + +            C PD ITY
Sbjct: 200 LQLLDRMSV---SPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRE------CYPDVITY 250

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           + +I+  CKE+G           +   L++M        V    + +  LI+G+CK  +L
Sbjct: 251 TILIEATCKESGVGQ--------AMKLLDEMRDKGCKPDV----VTYNVLINGICKEGRL 298

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ-MDETKHYETVFLLFKRLNSTGLFPD 358
             A      +P  G  PNV+T+NI++R +C+ G+ MD  K           +   G  P 
Sbjct: 299 DEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEK-------FLAEMIRKGCSPS 351

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + T+NILIN  C+ G +     +  ++     TP+++++  L+  L
Sbjct: 352 VVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHAL 397



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 118/256 (46%), Gaps = 21/256 (8%)

Query: 81  LNMRPS---RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK 137
           LN  PS   +P V + NI+   +  T  +         +   G  P   T+NILIN  C+
Sbjct: 305 LNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCR 364

Query: 138 MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFT 197
            G +     VL ++ +   TP+++++  L+  LC + ++  A      +   GC  D+ T
Sbjct: 365 KGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVT 424

Query: 198 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
           YNTL+  LC+ G   VA+ +  ++ +        C P  ITY+T+IDGL K   + +   
Sbjct: 425 YNTLLTALCKDGKVDVAVEILNQLGSKG------CSPVLITYNTVIDGLSKVGKTDD--- 475

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
                +   L++M        ++   + +  L+ GL +  K+  A   F  L   G+ PN
Sbjct: 476 -----AIKLLDEMKGK----GLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPN 526

Query: 318 VVTYNILIRGLCNDGQ 333
            +TYN ++ GLC   Q
Sbjct: 527 AITYNSIMLGLCKARQ 542



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 119/251 (47%), Gaps = 20/251 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FNIL   L +       + + +++   G  P+  +YN L++  CK  ++      
Sbjct: 350 PSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEY 409

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  ++ R C+ PD VT+ +L+  LC + ++  A  +  +L   GC   + TYNT+I+GL 
Sbjct: 410 LDIMVSRGCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLS 468

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G T  A+ L +EM  G G      +PD ITYST++ GL +E      + F     F  
Sbjct: 469 KVGKTDDAIKLLDEM-KGKG-----LKPDIITYSTLVGGLSREGKVDEAIAF-----FHD 517

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L +M      V+   +  N + L  GLCK  +   A +    +   G  P   +Y ILI 
Sbjct: 518 LEEMG-----VKPNAITYNSIML--GLCKARQTVRAIDFLAYMVARGCKPTETSYMILIE 570

Query: 327 GLCNDGQMDET 337
           GL  +G   E 
Sbjct: 571 GLAYEGLAKEA 581



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 9/179 (5%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+   D M++ R   P + ++N L   L K    D  + +  +L   G  P   TYN +I
Sbjct: 406 AIEYLDIMVS-RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVI 464

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +   K+G+      +L  +      PD +T+++L+  L  E ++ EA A F  L   G +
Sbjct: 465 DGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVK 524

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +  TYN+++ GLC+   T+ A++    M A G       C+P   +Y  +I+GL  E 
Sbjct: 525 PNAITYNSIMLGLCKARQTVRAIDFLAYMVARG-------CKPTETSYMILIEGLAYEG 576



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 57/134 (42%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N +   L+K    D  + L   +   GL PD  TY+ L+    + G+V      
Sbjct: 455 PVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAF 514

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      P+A+T+ S++  LC   + + A      +   GC+    +Y  LI GL  
Sbjct: 515 FHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAY 574

Query: 208 TGHTIVALNLFEEM 221
            G    AL L  E+
Sbjct: 575 EGLAKEALELLNEL 588


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 155/322 (48%), Gaps = 32/322 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++  L   L  +      + LF R++  G+FP+  TYN LIN   +  R+ + FV
Sbjct: 352 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL  + R+  +P+ VT+  +IK  C      +A  +   +   G   ++ TYNT+I G C
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYC 471

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS-FS 265
            +G+T  AL + + M +G       C+PD  +Y+ +I G CK          S M S F 
Sbjct: 472 DSGNTTSALRILDLMRDGG------CKPDEWSYTELICGFCK---------ISKMESAFG 516

Query: 266 ALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
             N+M           LC N   +  LIDG CK  KL  A  L + + R+G  PNV TYN
Sbjct: 517 LFNEMVD-------DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 569

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           +LI GL         +       L K +   G+FP++ TY  +I+  CK G  S    +F
Sbjct: 570 VLIHGLTKQNNFSGAEE------LCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMF 623

Query: 383 GRILPSCFTPDAVTFTSLIKIL 404
            +++     P+ +T++SLI+ L
Sbjct: 624 NKMIEQGCLPNLLTYSSLIRAL 645



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 146/332 (43%), Gaps = 42/332 (12%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ML+    R  + +++ L   L++      V+  + R+   G+ P+   YN +IN  CK G
Sbjct: 170 MLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDG 229

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V+    ++ ++  S  +PD  T+TS+I   C +  +  A  +F ++   GCE +  TY+
Sbjct: 230 NVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYS 289

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TLINGLC +G    A +L  EM                    I+ G+   A        +
Sbjct: 290 TLINGLCDSGRVNEAFDLIREM--------------------ILHGILPTA-------HT 322

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLC---------LIDGLCKISKLKIARELFQSLP 310
           C     AL  M  Y    R+     N  C         LI GLC    LK+A  LF  + 
Sbjct: 323 CTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMS 382

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R G+ PN VTYN LI  L       E +  +  F++   +   G  P++ TYN +I  +C
Sbjct: 383 RDGVFPNTVTYNALINILV------ENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            +G      ++   +L    + + VT+ ++IK
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIK 468



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 144/312 (46%), Gaps = 29/312 (9%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
            +++  C +K     T +S    L+ +GL    + Y+ L+    ++G  +       R+L
Sbjct: 149 IHLIKSCHSKEAMART-MSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRML 207

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL--DVFTYNTLINGLCRTGH 210
                P+ + + ++I  LC +  + +A  +  K  VF  E+  D FTY ++I G CR   
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKK--VFESEMSPDTFTYTSMILGHCRKHD 265

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              AL +F +MA         CEP+ +TYST+I+GLC ++G  N        +F  + +M
Sbjct: 266 LDSALQVFNQMAKEG------CEPNTVTYSTLINGLC-DSGRVN-------EAFDLIREM 311

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
             +  L          + L D  C     + A  LF  +   G  PNV TY  LI GLC 
Sbjct: 312 ILHGILPTAHTCTGPIIALCDMGC----YEDAWRLFVDMKNKGCEPNVYTYTALISGLCV 367

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G +      +    LF R++  G+FP+  TYN LIN   +  R+   FV+   +  +  
Sbjct: 368 SGLL------KVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGC 421

Query: 391 TPDAVTFTSLIK 402
           +P+ VT+  +IK
Sbjct: 422 SPNIVTYNEMIK 433



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 138/336 (41%), Gaps = 36/336 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V ++N+L   L K  ++     L K +   G+FP+  TY  +I+  CK G  S    
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  +++     P+ +T++SLI+ L  E ++ EA  LF +L   G   D  TY  +I    
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN------------ 254
            +G    A N    M          C+P   TY  +I GL  E   A+            
Sbjct: 682 MSGKVEHAFNFLGRMIKAG------CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPN 735

Query: 255 -FLGFS-----CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
              G+       ++  SA  K+A   P + VQ        L+  L    +   A EL  S
Sbjct: 736 CSFGYQTTDQDAVSVMSA--KLAELDPGLSVQVQN----ALVSNLSTAGRWFEANELLGS 789

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   GL P+   YN L   LC+   +   ++ +    +FK +++ G    L  Y  LI  
Sbjct: 790 MISQGLCPDQEAYNSL---LCS---LLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICA 843

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            C++ R     + F  +L   + PD V    LI  L
Sbjct: 844 LCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGL 879



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 128/332 (38%), Gaps = 95/332 (28%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P +A+ V + ML  R     + ++N +      + +  + L +   +   G  PD ++Y 
Sbjct: 441 PKKAMLVMNNMLQ-RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYT 499

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI  FCK+ ++   F +   ++     P+ VT+T+LI   C + ++  A +L   ++  
Sbjct: 500 ELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS 559

Query: 190 GCELDVFTYNTLI-----------------------------------NGLCRTGHTIVA 214
           GC  +V TYN LI                                   +GLC+ G T +A
Sbjct: 560 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 619

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
           L +F +M     E G  C P+ +TYS++I  L +E                         
Sbjct: 620 LEMFNKMI----EQG--CLPNLLTYSSLIRALGQEG------------------------ 649

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
                                  K++ A  LF  L R GL+P+ +TY  +I      G++
Sbjct: 650 -----------------------KVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKV 686

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
                 E  F    R+   G  P L+TY +LI
Sbjct: 687 ------EHAFNFLGRMIKAGCQPTLWTYGVLI 712



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 62/287 (21%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +++SC + +A+  T    D+ ++S               G  + +F Y+ L+  L R G
Sbjct: 150 HLIKSCHSKEAMARTMSFLDMLSQS---------------GLRMGLFAYSALLIHLSRLG 194

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
            T   ++ +  M +     GV  +P+ + Y+ +I+ LCK+   A+          S ++ 
Sbjct: 195 MTAAVMDRYHRMLSE----GV--QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSP 248

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
             F             +  +I G C+   L  A ++F  + + G  PN VTY+ LI GLC
Sbjct: 249 DTF------------TYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 296

Query: 330 NDGQMDE---------------TKH--------------YETVFLLFKRLNSTGLFPDLY 360
           + G+++E               T H              YE  + LF  + + G  P++Y
Sbjct: 297 DSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVY 356

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           TY  LI+  C  G +     +F R+      P+ VT+ +LI IL  N
Sbjct: 357 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVEN 403



 Score = 45.1 bits (105), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N L++     GR      +LG ++     PD   + SL+  L     +  A  +F  +  
Sbjct: 768 NALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMST 827

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            GCE+ +  Y  LI  LC+      A   FE M            PD +  + +IDGL +
Sbjct: 828 QGCEVHLNGYKELICALCQLHRRKEARITFENM------LMRTWNPDDVVQAVLIDGLLR 881

Query: 249 EA 250
           + 
Sbjct: 882 DG 883


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 164/333 (49%), Gaps = 28/333 (8%)

Query: 71  NEALC-VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           NEA   V+D M+N     P V +F+ L   L K   + + L L   ++  G  P+  TY 
Sbjct: 363 NEATAFVYDKMIN-NGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYT 421

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           ILI+ FCK G++    ++L  +L   F+ + V + +LI  LC   +I EA  +F ++   
Sbjct: 422 ILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSK 481

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           GC+ D+FT+N+LI GLCR      AL L+ +M       GV+   +++T++T+I    + 
Sbjct: 482 GCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLE----GVIA--NSVTFNTLIHAFLRR 535

Query: 250 AGSANFLGFSCMASFSALNKMAFYF-PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                        +   +N M F   PL  +      +  LI  LCK   ++    LF+ 
Sbjct: 536 G--------EIQEALKLVNDMLFRGCPLDEI-----TYNGLIKALCKTGAVEKGLGLFEE 582

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + R GL P+++T NILI G C  G++     +       + +   G  PD+ TYN LIN 
Sbjct: 583 MIRKGLTPSIITCNILINGFCTAGKVHNALEF------MRDMIHRGFSPDIVTYNSLING 636

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            CK GR+     +F ++      PD++T+ +LI
Sbjct: 637 LCKRGRIQEALNLFEKLQAEGIQPDSITYNTLI 669



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 173/404 (42%), Gaps = 96/404 (23%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    +  L   L+K    D  L L + + L G  PD  T+N +I  FC++ RV  G  +
Sbjct: 243 PNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKL 302

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR-------------------- 187
           + R++   FTP+ +T+  L+  LC   RI EA AL +K+                     
Sbjct: 303 VDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRL 362

Query: 188 ------VF------GCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEP 234
                 V+      G   DVFT++TL+NGLC+ G    AL L  +M A G       C+P
Sbjct: 363 NEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKG-------CKP 415

Query: 235 DAITYSTIIDGLCK-----EAG-----------SANFLGFSCMASFSALNK-------MA 271
           +  TY+ +IDG CK     EAG           S N +G++  A  SAL K       + 
Sbjct: 416 NLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYN--ALISALCKHGKIHEALD 473

Query: 272 FYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
            +  +    C      F  LI GLC++ +++ A  L++ +   G++ N VT+N LI    
Sbjct: 474 MFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFL 533

Query: 330 NDGQMDE-----------------------------TKHYETVFLLFKRLNSTGLFPDLY 360
             G++ E                             T   E    LF+ +   GL P + 
Sbjct: 534 RRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSII 593

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           T NILIN FC  G+V +       ++   F+PD VT+ SLI  L
Sbjct: 594 TCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGL 637



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 147/341 (43%), Gaps = 44/341 (12%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   S+N++   L          ++F  +   G+ P+ YT+ +++   C +  V +  +
Sbjct: 172 EPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACL 231

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  + +    P+++ + +LI  L    R+ EA  L  ++ + GC  DV T+NT+I G C
Sbjct: 232 LLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFC 291

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-----EAGS-------AN 254
           R    +    L + M            P+ +TY  ++ GLCK     EA +        N
Sbjct: 292 RLNRVLEGAKLVDRMILKG------FTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPN 345

Query: 255 FLGFSCM------------ASFSALNKMA--FYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
            + F+ +            A+    +KM    Y P V        F  L++GLCK     
Sbjct: 346 VVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDV------FTFSTLVNGLCKKGLFG 399

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A EL   +   G  PN+ TY ILI G C  GQ++E        L+ + + + G   +  
Sbjct: 400 SALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAG------LILREMLTKGFSLNTV 453

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            YN LI+  CK G++     +FG +      PD  TF SLI
Sbjct: 454 GYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLI 494



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 91/183 (49%), Gaps = 9/183 (4%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL + + ML  R       ++N L   L KT   +  L LF+ +   GL P   T NI
Sbjct: 539 QEALKLVNDML-FRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNI 597

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN FC  G+V +    +  ++   F+PD VT+ SLI  LC   RI EA  LF KL+  G
Sbjct: 598 LINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEG 657

Query: 191 CELDVFTYNTLINGLCRTGHTIVA-LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            + D  TYNTLI  LCR G    A   L+  + NG         P+ +T++ ++    K+
Sbjct: 658 IQPDSITYNTLICWLCREGAFDDACFLLYRGVENG-------FVPNDVTWNILVYNFGKQ 710

Query: 250 AGS 252
           + S
Sbjct: 711 SNS 713



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 9/158 (5%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  +    +K  CK+            + L +F+ M+  +   P + + NIL        
Sbjct: 556 DEITYNGLIKALCKTG--------AVEKGLGLFEEMIR-KGLTPSIITCNILINGFCTAG 606

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
                L   + +   G  PD  TYN LIN  CK GR+     +  ++      PD++T+ 
Sbjct: 607 KVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYN 666

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
           +LI  LC E    +A  L  +    G   +  T+N L+
Sbjct: 667 TLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILV 704


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 170/352 (48%), Gaps = 36/352 (10%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VF  ML  R  +P V +++IL     K    +  L LF ++    + P  +T+N +I
Sbjct: 483 ASSVFSDML-ARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTII 541

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK+G++S     L   L   F P  +T+ S++     E  I  A A++ ++  FG  
Sbjct: 542 NGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVS 601

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK---- 248
            +V TY +LING C++    +AL   +EM     E G+  E D   YS +IDG CK    
Sbjct: 602 PNVVTYTSLINGFCKSNRIDLALKTRDEMR----EKGL--ELDVTAYSALIDGFCKRRDM 655

Query: 249 -----------EAG-SANFLGFSCMAS-FSALNKM----AFYFPLV--RVQCLCLNFLCL 289
                      E G S N + ++ M S F  LN M     +Y  ++  R+ C    +  L
Sbjct: 656 ESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTL 715

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           IDGL K  +L  A +L+  +   G++P+++T+++L+ GLCN GQ++  +       + + 
Sbjct: 716 IDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARK------ILEE 769

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++   + P +  YN LI  + + G +   F +   +L     PD VT+  LI
Sbjct: 770 MDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILI 821



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 167/363 (46%), Gaps = 36/363 (9%)

Query: 48  SLEQFLKERCKSSGEGDITSITPN--------EALCVFDYMLNMRPSRPPVTSFNILFGC 99
            L + +KER     E   TS+           EAL + + M+N       V + +++ G 
Sbjct: 276 ELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGY 335

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
            A+  + D+ L+LF ++   GLFP++ TY++LI   C  G +     +  ++  +   P 
Sbjct: 336 CAQG-NLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPS 394

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
                SL++         EA+ LF +    G   ++FTYN +++ LC+ G    A +L +
Sbjct: 395 VFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLD 453

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR- 278
            M N     G+V  P+ ++Y+ +I G C++       G   MAS S  + M     L R 
Sbjct: 454 NMVNQ----GMV--PNVVSYNDMILGHCRK-------GNMDMAS-SVFSDM-----LARD 494

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           ++   + +  LIDG  K    + A +LF  +    + P   T+N +I GLC  GQM E +
Sbjct: 495 LKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEAR 554

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                FL        G  P   TYN +++ F K G + S   ++  +     +P+ VT+T
Sbjct: 555 DKLKNFL------EEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYT 608

Query: 399 SLI 401
           SLI
Sbjct: 609 SLI 611



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 145/336 (43%), Gaps = 35/336 (10%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++NI+   L K    D   SL   +   G+ P+  +YN +I   C+ G +     V   +
Sbjct: 431 TYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDM 490

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           L     P+ VT++ LI     +    +A  LF ++         FT+NT+INGLC+ G  
Sbjct: 491 LARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQM 550

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKM 270
             A +  +       E G +  P  +TY++I+DG  KE    + L  +  M  F     +
Sbjct: 551 SEARDKLKNFL----EEGFI--PSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNV 604

Query: 271 AFYFPLV-------------------RVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
             Y  L+                   R + L L+   +  LIDG CK   ++ A++LF  
Sbjct: 605 VTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFE 664

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   GL PN + YN +I G  +   M      E   + +K++ +  +  DL TY  LI+ 
Sbjct: 665 LLEVGLSPNRIVYNSMISGFRDLNNM------EAALVWYKKMINDRIPCDLGTYTTLIDG 718

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             K GR+     ++  +L     PD +TF  L+  L
Sbjct: 719 LLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGL 754



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 136/304 (44%), Gaps = 26/304 (8%)

Query: 98  GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 157
            CL K    +     F+     G+  D   Y+I+I   CK    + G  +L  +    + 
Sbjct: 229 ACL-KEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWV 287

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P   TFTS+I    A+  ++EA  L  ++   G  +++    +L+ G C  G+   ALNL
Sbjct: 288 PSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNL 347

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
           F ++   +G F     P+ +TYS +I+G C    S N    S + +   LN +    P V
Sbjct: 348 FNKITE-DGLF-----PNKVTYSVLIEGCCN---SGNIEKASELYTQMKLNGIP---PSV 395

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                  N   L+ G  K    + A +LF      G+  N+ TYNI++  LC  G+MDE 
Sbjct: 396 ------FNVNSLLRGYLKAPLWEEASKLFDEAVDCGV-ANIFTYNIMMSWLCKGGKMDEA 448

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   L   + + G+ P++ +YN +I   C+ G +     +F  +L     P+ VT+
Sbjct: 449 CS------LLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTY 502

Query: 398 TSLI 401
           + LI
Sbjct: 503 SILI 506



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 138/357 (38%), Gaps = 61/357 (17%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           FD+ L+ R        FN L     +    +  +  F  +    + P     NIL+    
Sbjct: 144 FDFELDHR-------VFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALV 196

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           +   +     +  +++      D  T   +++    E R+ EA   F + +  G +LD  
Sbjct: 197 RRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAG 256

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
            Y+ +I  +C+  ++ + L L EEM     E G V  P   T++++I             
Sbjct: 257 AYSIIIQAVCKKPNSNLGLELLEEMK----ERGWV--PSEATFTSVI------------- 297

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLC---LIDGLCKISKLKIARELFQSLPRAG 313
             +C+A  + +  +     ++      +N +    L+ G C    L  A  LF  +   G
Sbjct: 298 -VACVAQGNMVEALRLKEEMINCG-KPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDG 355

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKH-----------------------------YETVF 344
           L PN VTY++LI G CN G +++                                +E   
Sbjct: 356 LFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEAS 415

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            LF      G+  +++TYNI+++  CK G++     +   ++     P+ V++  +I
Sbjct: 416 KLFDEAVDCGV-ANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMI 471



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 107/279 (38%), Gaps = 24/279 (8%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D   +N L+N + +  R+ +       ++     P       L+  L   + I E   L+
Sbjct: 149 DHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLY 208

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            K+ + G   D FT + ++    + G    A   F E      E GV  + DA  YS II
Sbjct: 209 NKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETK----ERGV--KLDAGAYSIII 262

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
             +CK+  S   LG   +        +        V   C+    +++ L          
Sbjct: 263 QAVCKKPNSN--LGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEAL---------- 310

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            L + +   G   N+V    L++G C  G +D      +   LF ++   GLFP+  TY+
Sbjct: 311 RLKEEMINCGKPMNLVVATSLMKGYCAQGNLD------SALNLFNKITEDGLFPNKVTYS 364

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +LI   C  G +     ++ ++  +   P      SL++
Sbjct: 365 VLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLR 403



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 5/134 (3%)

Query: 73  ALCVFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           AL  +  M+N    R P  + ++  L   L K         L+  +   G+ PD  T+++
Sbjct: 693 ALVWYKKMIN---DRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHV 749

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  C  G++ +   +L  + R   TP  + + +LI     E  + EA  L  ++   G
Sbjct: 750 LVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRG 809

Query: 191 CELDVFTYNTLING 204
              D  TY+ LING
Sbjct: 810 LVPDDVTYDILING 823


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 170/352 (48%), Gaps = 36/352 (10%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VF  ML  R  +P V +++IL     K    +  L LF ++    + P  +T+N +I
Sbjct: 523 ASSVFSDML-ARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTII 581

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK+G++S     L   L   F P  +T+ S++     E  I  A A++ ++  FG  
Sbjct: 582 NGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVS 641

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK---- 248
            +V TY +LING C++    +AL   +EM     E G+  E D   YS +IDG CK    
Sbjct: 642 PNVVTYTSLINGFCKSNRIDLALKTRDEMR----EKGL--ELDVTAYSALIDGFCKRRDM 695

Query: 249 -----------EAG-SANFLGFSCMAS-FSALNKM----AFYFPLV--RVQCLCLNFLCL 289
                      E G S N + ++ M S F  LN M     +Y  ++  R+ C    +  L
Sbjct: 696 ESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTL 755

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           IDGL K  +L  A +L+  +   G++P+++T+++L+ GLCN GQ++  +       + + 
Sbjct: 756 IDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARK------ILEE 809

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++   + P +  YN LI  + + G +   F +   +L     PD VT+  LI
Sbjct: 810 MDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILI 861



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 167/363 (46%), Gaps = 36/363 (9%)

Query: 48  SLEQFLKERCKSSGEGDITSITPN--------EALCVFDYMLNMRPSRPPVTSFNILFGC 99
            L + +KER     E   TS+           EAL + + M+N       V + +++ G 
Sbjct: 316 ELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGY 375

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
            A+  + D+ L+LF ++   GLFP++ TY++LI   C  G +     +  ++  +   P 
Sbjct: 376 CAQG-NLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPS 434

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
                SL++         EA+ LF +    G   ++FTYN +++ LC+ G    A +L +
Sbjct: 435 VFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA-NIFTYNIMMSWLCKGGKMDEACSLLD 493

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR- 278
            M N     G+V  P+ ++Y+ +I G C++       G   MAS S  + M     L R 
Sbjct: 494 NMVNQ----GMV--PNVVSYNDMILGHCRK-------GNMDMAS-SVFSDM-----LARD 534

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           ++   + +  LIDG  K    + A +LF  +    + P   T+N +I GLC  GQM E +
Sbjct: 535 LKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEAR 594

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                FL        G  P   TYN +++ F K G + S   ++  +     +P+ VT+T
Sbjct: 595 DKLKNFL------EEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYT 648

Query: 399 SLI 401
           SLI
Sbjct: 649 SLI 651



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 145/336 (43%), Gaps = 35/336 (10%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++NI+   L K    D   SL   +   G+ P+  +YN +I   C+ G +     V   +
Sbjct: 471 TYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDM 530

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           L     P+ VT++ LI     +    +A  LF ++         FT+NT+INGLC+ G  
Sbjct: 531 LARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQM 590

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKM 270
             A +  +       E G +  P  +TY++I+DG  KE    + L  +  M  F     +
Sbjct: 591 SEARDKLKNFL----EEGFI--PSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNV 644

Query: 271 AFYFPLV-------------------RVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
             Y  L+                   R + L L+   +  LIDG CK   ++ A++LF  
Sbjct: 645 VTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFE 704

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   GL PN + YN +I G  +   M      E   + +K++ +  +  DL TY  LI+ 
Sbjct: 705 LLEVGLSPNRIVYNSMISGFRDLNNM------EAALVWYKKMINDRIPCDLGTYTTLIDG 758

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             K GR+     ++  +L     PD +TF  L+  L
Sbjct: 759 LLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGL 794



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 136/304 (44%), Gaps = 26/304 (8%)

Query: 98  GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 157
            CL K    +     F+     G+  D   Y+I+I   CK    + G  +L  +    + 
Sbjct: 269 ACL-KEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWV 327

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P   TFTS+I    A+  ++EA  L  ++   G  +++    +L+ G C  G+   ALNL
Sbjct: 328 PSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNL 387

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
           F ++   +G F     P+ +TYS +I+G C    S N    S + +   LN +    P V
Sbjct: 388 FNKITE-DGLF-----PNKVTYSVLIEGCCN---SGNIEKASELYTQMKLNGIP---PSV 435

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                  N   L+ G  K    + A +LF      G+  N+ TYNI++  LC  G+MDE 
Sbjct: 436 ------FNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA-NIFTYNIMMSWLCKGGKMDEA 488

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   L   + + G+ P++ +YN +I   C+ G +     +F  +L     P+ VT+
Sbjct: 489 CS------LLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTY 542

Query: 398 TSLI 401
           + LI
Sbjct: 543 SILI 546



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 138/357 (38%), Gaps = 61/357 (17%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           FD+ L+ R        FN L     +    +  +  F  +    + P     NIL+    
Sbjct: 184 FDFELDHR-------VFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALV 236

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           +   +     +  +++      D  T   +++    E R+ EA   F + +  G +LD  
Sbjct: 237 RRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAG 296

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
            Y+ +I  +C+  ++ + L L EEM     E G V  P   T++++I             
Sbjct: 297 AYSIIIQAVCKKPNSNLGLELLEEMK----ERGWV--PSEATFTSVI------------- 337

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLC---LIDGLCKISKLKIARELFQSLPRAG 313
             +C+A  + +  +     ++      +N +    L+ G C    L  A  LF  +   G
Sbjct: 338 -VACVAQGNMVEALRLKEEMINCG-KPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDG 395

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKH-----------------------------YETVF 344
           L PN VTY++LI G CN G +++                                +E   
Sbjct: 396 LFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEAS 455

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            LF      G+  +++TYNI+++  CK G++     +   ++     P+ V++  +I
Sbjct: 456 KLFDEAVDCGV-ANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMI 511



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 107/279 (38%), Gaps = 24/279 (8%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D   +N L+N + +  R+ +       ++     P       L+  L   + I E   L+
Sbjct: 189 DHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLY 248

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            K+ + G   D FT + ++    + G    A   F E      E GV  + DA  YS II
Sbjct: 249 NKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETK----ERGV--KLDAGAYSIII 302

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
             +CK+  S   LG   +        +        V   C+    +++ L          
Sbjct: 303 QAVCKKPNSN--LGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEAL---------- 350

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            L + +   G   N+V    L++G C  G +D      +   LF ++   GLFP+  TY+
Sbjct: 351 RLKEEMINCGKPMNLVVATSLMKGYCAQGNLD------SALNLFNKITEDGLFPNKVTYS 404

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +LI   C  G +     ++ ++  +   P      SL++
Sbjct: 405 VLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLR 443



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 5/134 (3%)

Query: 73  ALCVFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           AL  +  M+N    R P  + ++  L   L K         L+  +   G+ PD  T+++
Sbjct: 733 ALVWYKKMIN---DRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHV 789

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  C  G++ +   +L  + R   TP  + + +LI     E  + EA  L  ++   G
Sbjct: 790 LVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRG 849

Query: 191 CELDVFTYNTLING 204
              D  TY+ LING
Sbjct: 850 LVPDDVTYDILING 863


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 155/322 (48%), Gaps = 32/322 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++  L   L  +      + LF R++  G+FP+  TYN LIN   +  R+ + FV
Sbjct: 352 EPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL  + R+  +P+ VT+  +IK  C      +A  +   +   G   ++ TYNT+I G C
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYC 471

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS-FS 265
            +G+T  AL + + M +G       C+PD  +Y+ +I G CK          S M S F 
Sbjct: 472 DSGNTTSALRILDLMRDGG------CKPDEWSYTELICGFCK---------ISKMESAFG 516

Query: 266 ALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
             N+M           LC N   +  LIDG CK  KL  A  L + + R+G  PNV TYN
Sbjct: 517 LFNEMVD-------DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 569

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           +LI GL         +       L K +   G+FP++ TY  +I+  CK G  S    +F
Sbjct: 570 VLIHGLTKQNNFSGAEE------LCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMF 623

Query: 383 GRILPSCFTPDAVTFTSLIKIL 404
            +++     P+ +T++SLI+ L
Sbjct: 624 NKMIEQGCLPNLLTYSSLIRAL 645



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 146/332 (43%), Gaps = 42/332 (12%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ML+    R  + +++ L   L++      V+  + R+   G+ P+   YN +IN  CK G
Sbjct: 170 MLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDG 229

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V+    ++ ++  S  +PD  T+TS+I   C +  +  A  +F ++   GCE +  TY+
Sbjct: 230 NVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYS 289

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TLINGLC +G    A +L  EM                    I+ G+   A        +
Sbjct: 290 TLINGLCDSGRVNEAFDLIREM--------------------ILHGILPTA-------HT 322

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLC---------LIDGLCKISKLKIARELFQSLP 310
           C     AL  M  Y    R+     N  C         LI GLC    LK+A  LF  + 
Sbjct: 323 CTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMS 382

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R G+ PN VTYN LI  L       E +  +  F++   +   G  P++ TYN +I  +C
Sbjct: 383 RDGVFPNTVTYNALINILV------ENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            +G      ++   +L    + + VT+ ++IK
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIK 468



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 145/312 (46%), Gaps = 29/312 (9%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
            +++  C +K     T +S    L+ +GL    + Y+ L+    ++G  +       R+L
Sbjct: 149 IHLIKSCHSKEAMART-MSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRML 207

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL--DVFTYNTLINGLCRTGH 210
                P+ + + ++I  LC +  + +A  +  K  VF  E+  D FTY ++I G CR   
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKK--VFESEMSPDTFTYTSMILGHCRKHD 265

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              AL +F +MA         CEP+ +TYST+I+GLC ++G  N        +F  + +M
Sbjct: 266 LDSALQVFNQMAKEG------CEPNTVTYSTLINGLC-DSGRVN-------EAFDLIREM 311

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
             +  L      C      I  LC +   + A  LF  +   G  PNV TY  LI GLC 
Sbjct: 312 ILHGILPTAHT-CTG---PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCV 367

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G +      +    LF R++  G+FP+  TYN LIN   +  R+   FV+   +  +  
Sbjct: 368 SGIL------KVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGC 421

Query: 391 TPDAVTFTSLIK 402
           +P+ VT+  +IK
Sbjct: 422 SPNIVTYNEMIK 433



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 138/336 (41%), Gaps = 36/336 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V ++N+L   L K  ++     L K +   G+FP+  TY  +I+  CK G  S    
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  +++     P+ +T++SLI+ L  E ++ EA  LF +L   G   D  TY  +I    
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN------------ 254
            +G    A N    M          C+P   TY  +I GL  E   A+            
Sbjct: 682 MSGKVEHAFNFLGRMIKAG------CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPN 735

Query: 255 -FLGFS-----CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
              G+       ++  SA  K+A   P + VQ        L+  L    +   A EL  S
Sbjct: 736 CSFGYQTTDQDAVSVMSA--KLAELDPGLSVQVQN----ALVSNLSTAGRWFEANELLGS 789

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   GL P+   YN L   LC+   +   ++ +    +FK +++ G    L  Y  LI  
Sbjct: 790 MISQGLCPDQEAYNSL---LCS---LLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICA 843

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            C++ R     + F  +L   + PD V    LI  L
Sbjct: 844 LCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGL 879



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 128/332 (38%), Gaps = 95/332 (28%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P +A+ V + ML  R     + ++N +      + +  + L +   +   G  PD ++Y 
Sbjct: 441 PKKAMLVMNNMLQ-RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYT 499

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI  FCK+ ++   F +   ++     P+ VT+T+LI   C + ++  A +L   ++  
Sbjct: 500 ELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS 559

Query: 190 GCELDVFTYNTLI-----------------------------------NGLCRTGHTIVA 214
           GC  +V TYN LI                                   +GLC+ G T +A
Sbjct: 560 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 619

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
           L +F +M     E G  C P+ +TYS++I  L +E                         
Sbjct: 620 LEMFNKMI----EQG--CLPNLLTYSSLIRALGQEG------------------------ 649

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
                                  K++ A  LF  L R GL+P+ +TY  +I      G++
Sbjct: 650 -----------------------KVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKV 686

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
                 E  F    R+   G  P L+TY +LI
Sbjct: 687 ------EHAFNFLGRMIKAGCQPTLWTYGVLI 712



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 62/287 (21%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +++SC + +A+  T    D+ ++S               G  + +F Y+ L+  L R G
Sbjct: 150 HLIKSCHSKEAMARTMSFLDMLSQS---------------GLRMGLFAYSALLIHLSRLG 194

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
            T   ++ +  M +     GV  +P+ + Y+ +I+ LCK+   A+          S ++ 
Sbjct: 195 MTAAVMDRYHRMLSE----GV--QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSP 248

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
             F             +  +I G C+   L  A ++F  + + G  PN VTY+ LI GLC
Sbjct: 249 DTF------------TYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 296

Query: 330 NDGQMDE---------------TKH--------------YETVFLLFKRLNSTGLFPDLY 360
           + G+++E               T H              YE  + LF  + + G  P++Y
Sbjct: 297 DSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVY 356

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           TY  LI+  C  G +     +F R+      P+ VT+ +LI IL  N
Sbjct: 357 TYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVEN 403



 Score = 45.1 bits (105), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N L++     GR      +LG ++     PD   + SL+  L     +  A  +F  +  
Sbjct: 768 NALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMST 827

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            GCE+ +  Y  LI  LC+      A   FE M            PD +  + +IDGL +
Sbjct: 828 QGCEVHLNGYKELICALCQLHRRKEARITFENM------LMRTWNPDDVVQAVLIDGLLR 881

Query: 249 EA 250
           + 
Sbjct: 882 DG 883


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/298 (32%), Positives = 139/298 (46%), Gaps = 30/298 (10%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           + VL L + + + GL P+ YTYN +I   CK G+V+    VL  ++     PD V +T+L
Sbjct: 205 EWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTL 264

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           I   C    +  A  LF +++      D  TY  +I GLC+TG  + A  LF EM     
Sbjct: 265 IDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEM----- 319

Query: 227 EFGVVC---EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
               VC   EPD +TY+ +IDG CKE             +FS  N+M        +    
Sbjct: 320 ----VCKRLEPDEVTYTALIDGYCKEG--------KMKEAFSLHNQMLQMGLTPNI---- 363

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           + +  L DGLCK  ++  A EL   + R GL  N+ TYN L+ GLC  G +D+       
Sbjct: 364 VTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQA------ 417

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             L K +   G  PD  TY  L++ +CK   +     +  ++L     P  VTF  L+
Sbjct: 418 VKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLM 475



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 153/324 (47%), Gaps = 28/324 (8%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           + ++  +P   ++N +   L KT        + + +   G+ PD   Y  LI+ FCK+G 
Sbjct: 214 MQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGN 273

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           VS  + +   + +   +PD +T+T++I  LC   R+MEA  LF ++     E D  TY  
Sbjct: 274 VSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTA 333

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGF 258
           LI+G C+ G    A +L  +M     + G+   P+ +TY+ + DGLCK  E  +AN L  
Sbjct: 334 LIDGYCKEGKMKEAFSLHNQML----QMGLT--PNIVTYTALADGLCKCGEVDTANELLH 387

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                   LN                 +  L++GLCK   +  A +L + +  AG  P+ 
Sbjct: 388 EMCRKGLELN--------------IYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDA 433

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           VTY  L+   C   +M   + +E    L +++    L P + T+N+L+N FC  G +  G
Sbjct: 434 VTYTTLMDAYCKSREM--VRAHE----LLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDG 487

Query: 379 FVIFGRILPSCFTPDAVTFTSLIK 402
             +   +L     P+A T+ SLIK
Sbjct: 488 EKLLKWMLEKGIMPNATTYNSLIK 511



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 159/346 (45%), Gaps = 34/346 (9%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD M   R   P   ++  +   L +T        LF  +    L PD  TY  LI+ +
Sbjct: 280 LFDEM-QKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGY 338

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK G++   F +  ++L+   TP+ VT+T+L   LC    +  A  L  ++   G EL++
Sbjct: 339 CKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNI 398

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           +TYN+L+NGLC+ G+   A+ L ++M            PDA+TY+T++D  CK       
Sbjct: 399 YTYNSLVNGLCKAGNIDQAVKLMKDMEVAG------FHPDAVTYTTLMDAYCKSR----- 447

Query: 256 LGFSCMASFSALNKMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                + +   L +M     L R +Q   + F  L++G C    L+   +L + +   G+
Sbjct: 448 ---EMVRAHELLRQM-----LDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGI 499

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
           MPN  TYN LI+  C    M  T        +++ + + G+ PD  TYNILI   CK   
Sbjct: 500 MPNATTYNSLIKQYCIRNNMRATTE------IYRGMCAKGVVPDGNTYNILIKGHCKARN 553

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           +   + +   ++   F     ++ +LI       K LE    F Q+
Sbjct: 554 MKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQM 599



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 124/289 (42%), Gaps = 30/289 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + + ML M  + P + ++  L   L K    DT   L   +   GL  + YTYN L
Sbjct: 346 EAFSLHNQMLQMGLT-PNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSL 404

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N  CK G +     ++  +  + F PDAVT+T+L+   C    ++ A  L  ++     
Sbjct: 405 VNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDREL 464

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-KEA 250
           +  V T+N L+NG C +G       L + M     E G++  P+A TY+++I   C +  
Sbjct: 465 QPTVVTFNVLMNGFCMSGMLEDGEKLLKWML----EKGIM--PNATTYNSLIKQYCIRNN 518

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN----------------------FLC 288
             A    +  M +   +     Y  L++  C   N                      +  
Sbjct: 519 MRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNA 578

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           LI G  K  K   ARELF+ + R GL+ +   YNI      ++G+M+ T
Sbjct: 579 LIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELT 627



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 13/131 (9%)

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           +DG+    K +   +L + +   GL PN  TYN +I  LC  G++ E +       + + 
Sbjct: 195 LDGIKIALKGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAER------VLRE 248

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------K 402
           + S G+ PD   Y  LI+ FCK+G VSS + +F  +     +PD +T+T++I       +
Sbjct: 249 MISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGR 308

Query: 403 ILEINSFFRQV 413
           ++E +  F ++
Sbjct: 309 VMEADKLFHEM 319



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 9/117 (7%)

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK---HYETVFLLFKRLNSTGLFPD 358
           AR+LF  +   GL+ +V + N+ I  L  D  +D  K     E V  L + +   GL P+
Sbjct: 165 ARKLFDKMLNYGLLISVDSCNLFISHLSED--LDGIKIALKGEWVLKLIEEMQIKGLKPN 222

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----KILEINSFFR 411
            YTYN +I   CK G+V+    +   ++     PD V +T+LI    K+  ++S +R
Sbjct: 223 PYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYR 279



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 55/133 (41%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T++N L        +      +++ +   G+ PD  TYNILI   CK   +   + +
Sbjct: 501 PNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFL 560

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++   F     ++ +LIK      + +EA  LF ++R  G   D   YN   +    
Sbjct: 561 HRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYD 620

Query: 208 TGHTIVALNLFEE 220
            G   + L L +E
Sbjct: 621 EGKMELTLELCDE 633


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 156/320 (48%), Gaps = 33/320 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N++     K    +  LS+  R++++   PD  TYN ++   C  G++     V
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L R+L R C+ PD +T+T LI+  C +S +  A  L  ++R  GC  DV TYN L+NG+C
Sbjct: 227 LDRMLQRDCY-PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A+    +M +        C+P+ IT++ I+  +C             M +   
Sbjct: 286 KEGRLDEAIKFLNDMPSSG------CQPNVITHNIILRSMCSTG--------RWMDAEKL 331

Query: 267 LNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           L  M    + P V      + F  LI+ LC+   L  A ++ + +P+ G  PN ++YN L
Sbjct: 332 LADMLRKGFSPSV------VTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPL 385

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + G C + +MD    Y       +R+ S G +PD+ TYN ++   CK G+V     I  +
Sbjct: 386 LHGFCKEKKMDRAIEY------LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           +     +P  +T+ ++I  L
Sbjct: 440 LSSKGCSPVLITYNTVIDGL 459



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 148/320 (46%), Gaps = 30/320 (9%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P   P T+    F  L KT+    +L +   L  +G  PD  TYN++I+ +CK G +++ 
Sbjct: 135 PDIIPCTTLIRGFCRLGKTRKAAKILEI---LEGSGAVPDVITYNVMISGYCKAGEINNA 191

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             VL R+     +PD VT+ ++++ LC   ++ +A  +  ++    C  DV TY  LI  
Sbjct: 192 LSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEA 248

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
            CR      A+ L +EM +        C PD +TY+ +++G+CKE      + F      
Sbjct: 249 TCRDSGVGHAMKLLDEMRDRG------CTPDVVTYNVLVNGICKEGRLDEAIKF------ 296

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             LN M    P    Q   +    ++  +C   +   A +L   + R G  P+VVT+NIL
Sbjct: 297 --LNDM----PSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNIL 350

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I  LC  G +           + +++   G  P+  +YN L++ FCK  ++        R
Sbjct: 351 INFLCRKGLLGR------AIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLER 404

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           ++     PD VT+ +++  L
Sbjct: 405 MVSRGCYPDIVTYNTMLTAL 424



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 147/332 (44%), Gaps = 29/332 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ V D ML  R   P V ++ IL     +       + L   +   G  PD  TYN+L
Sbjct: 222 QAMEVLDRMLQ-RDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVL 280

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N  CK GR+      L  +  S   P+ +T   +++ +C+  R M+A  L   +   G 
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              V T+N LIN LCR G    A+++ E+M          C+P++++Y+ ++ G CKE  
Sbjct: 341 SPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG------CQPNSLSYNPLLHGFCKEKK 394

Query: 252 SANFLGFSCMASFSALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
               + +        L +M     +P +      + +  ++  LCK  K++ A E+   L
Sbjct: 395 MDRAIEY--------LERMVSRGCYPDI------VTYNTMLTALCKDGKVEDAVEILNQL 440

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G  P ++TYN +I GL   G+  +         L   + +  L PD  TY+ L+   
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGK------AIKLLDEMRAKDLKPDTITYSSLVGGL 494

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + G+V      F         P+AVTF S++
Sbjct: 495 SREGKVDEAIKFFHEFERMGIRPNAVTFNSIM 526



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 167/366 (45%), Gaps = 41/366 (11%)

Query: 52  FLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
            ++  C+ SG G         A+ + D M + R   P V ++N+L   + K    D  + 
Sbjct: 245 LIEATCRDSGVG--------HAMKLLDEMRD-RGCTPDVVTYNVLVNGICKEGRLDEAIK 295

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
               +  +G  P+  T+NI++   C  GR      +L  +LR  F+P  VTF  LI  LC
Sbjct: 296 FLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
            +  +  A  +  K+   GC+ +  +YN L++G C+      A+   E M +        
Sbjct: 356 RKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG------ 409

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY--FPLVRVQCLCLNFLCL 289
           C PD +TY+T++  LCK+    +        +   LN+++     P++      + +  +
Sbjct: 410 CYPDIVTYNTMLTALCKDGKVED--------AVEILNQLSSKGCSPVL------ITYNTV 455

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           IDGL K  K   A +L   +    L P+ +TY+ L+ GL  +G++DE   +   F  F+R
Sbjct: 456 IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKF---FHEFER 512

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSG--FVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           +   G+ P+  T+N ++   CK  +      F++F  ++     P+  ++T LI+ L   
Sbjct: 513 M---GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVF--MINRGCKPNETSYTILIEGLAYE 567

Query: 408 SFFRQV 413
              ++ 
Sbjct: 568 GMAKEA 573



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 134/302 (44%), Gaps = 39/302 (12%)

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
           HY +V S F          D  + N L     + G +  GF  L  ++     PD +  T
Sbjct: 90  HYSSVNSSFA-------LEDVESNNHLRQ-MVRTGELEEGFKFLENMVYHGNVPDIIPCT 141

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           +LI+  C   +  +AA +   L   G   DV TYN +I+G C+ G    AL++ + M+  
Sbjct: 142 TLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS-- 199

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY--FPLVRVQCL 282
                    PD +TY+TI+  LC               +   L++M     +P V     
Sbjct: 200 -------VSPDVVTYNTILRSLCDSG--------KLKQAMEVLDRMLQRDCYPDV----- 239

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
            + +  LI+  C+ S +  A +L   +   G  P+VVTYN+L+ G+C +G++DE   +  
Sbjct: 240 -ITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKF-- 296

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
                  + S+G  P++ T+NI++   C  GR      +   +L   F+P  VTF  LI 
Sbjct: 297 ----LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILIN 352

Query: 403 IL 404
            L
Sbjct: 353 FL 354



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 139/303 (45%), Gaps = 29/303 (9%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           + +T   +      + +   G  PD      LI  FC++G+      +L  +  S   PD
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            +T+  +I   C    I  A ++  ++ V     DV TYNT++  LC +G    A+ + +
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRMSV---SPDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
            M   +      C PD ITY+ +I+  C+++G  + +          L++M        V
Sbjct: 229 RMLQRD------CYPDVITYTILIEATCRDSGVGHAMKL--------LDEMRDRGCTPDV 274

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ-MDETK 338
               + +  L++G+CK  +L  A +    +P +G  PNV+T+NI++R +C+ G+ MD  K
Sbjct: 275 ----VTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEK 330

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  L   +   G  P + T+NILIN  C+ G +     I  ++      P+++++ 
Sbjct: 331 -------LLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYN 383

Query: 399 SLI 401
            L+
Sbjct: 384 PLL 386



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 114/252 (45%), Gaps = 31/252 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FNIL   L +       + + +++   G  P+  +YN L++ FCK  ++      
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L R++ R C+ PD VT+ +++  LC + ++ +A  +  +L   GC   + TYNT+I+GL 
Sbjct: 402 LERMVSRGCY-PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLA 460

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-------- 258
           + G T  A+ L +EM   +       +PD ITYS+++ GL +E      + F        
Sbjct: 461 KAGKTGKAIKLLDEMRAKD------LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514

Query: 259 ---------SCMASF--SALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIAR 303
                    S M     S     A  F +  +   C     ++  LI+GL      K A 
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEAL 574

Query: 304 ELFQSLPRAGLM 315
           EL   L   GLM
Sbjct: 575 ELLNELCNKGLM 586


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 157/332 (47%), Gaps = 31/332 (9%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           V+  M+  R S P V ++NIL             L  F  +   G  P+  TYN LI+ +
Sbjct: 201 VYREMIRSRVS-PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAY 259

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CKMGR+   F +L  +      P+ +++  +I  LC E  + EA  +  ++   G   D 
Sbjct: 260 CKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDE 319

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            TYNTL+NG C+ G+   AL +  EM   NG       P  +TY+ +I+ +CK       
Sbjct: 320 VTYNTLLNGYCKEGNFHQALVIHAEMVR-NG-----VSPSVVTYTALINSMCKARN---- 369

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRA 312
                      LN+   +F  +R++ L  N   +  LIDG  +   L  A  +   +  +
Sbjct: 370 -----------LNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTES 418

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  P+VVTYN  I G C   +M+E         + + +   GL PD+ +Y+ +I+ FC+ 
Sbjct: 419 GFSPSVVTYNAFIHGHCVLERMEE------ALGVVQEMVEKGLAPDVVSYSTIISGFCRK 472

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G +   F +   ++    +PDAVT++SLI+ L
Sbjct: 473 GELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 504



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 155/338 (45%), Gaps = 20/338 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  + + M     S P V ++N         +  +  L + + +   GL PD  +Y+ 
Sbjct: 406 NEAYRILNEMTESGFS-PSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 464

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+ FC+ G +   F +   ++    +PDAVT++SLI+ LC   R+ EA  L  ++   G
Sbjct: 465 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 524

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D FTY TLIN  C  G    AL+L +EM +     G +  PDA+TYS +I+GL K+A
Sbjct: 525 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHK----GFL--PDAVTYSVLINGLNKQA 578

Query: 251 GS--ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF---LCLIDGLCKISKLKIAREL 305
            +  A  L F  +   S  + +  Y  L+   C  + F   + LI G C    +  A  +
Sbjct: 579 RTREAKRLLFKLIYEESVPSDVT-YDTLIE-NCSNIEFKSVVALIKGFCMKGLMHEADRV 636

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F+S+      P    YN++I G C  G + +       F L+K +  +G  P   T   L
Sbjct: 637 FESMVERNHKPGEAVYNVIIHGHCRGGNLPK------AFNLYKEMIHSGFVPHTVTVITL 690

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           I    K G       + G  L SC   +A     L++I
Sbjct: 691 IKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEI 728



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 148/352 (42%), Gaps = 46/352 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A+  FD M  +R  RP   ++  L    ++    +    +   +  +G  P   TYN 
Sbjct: 371 NRAMEFFDQM-RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNA 429

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I+  C + R+     V+  ++     PD V+++++I   C +  +  A  +  ++   G
Sbjct: 430 FIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG 489

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  TY++LI GLC       A +L +EM +      +   PD  TY+T+I+  C E 
Sbjct: 490 VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLD------MGLPPDEFTYTTLINAYCVEG 543

Query: 251 GSANFLGFSCMASFSALNK-MAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQ 307
                           LNK +  +  ++    L   + +  LI+GL K ++ + A+ L  
Sbjct: 544 D---------------LNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLF 588

Query: 308 SLPRAGLMPNVVTYNI---------------LIRGLCNDGQMDETKHYETVFLLFKRLNS 352
            L     +P+ VTY+                LI+G C  G M E         +F+ +  
Sbjct: 589 KLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADR------VFESMVE 642

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               P    YN++I+  C+ G +   F ++  ++ S F P  VT  +LIK L
Sbjct: 643 RNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKAL 694



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 33/164 (20%)

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L K + + P V      L+ +    G  K+S    A E+++ + R+ + PNV TYNILIR
Sbjct: 167 LAKSSGFMPGVLSYNSVLDAIVRSRGSVKLS----AEEVYREMIRSRVSPNVYTYNILIR 222

Query: 327 GLCNDGQMD-----------------------------ETKHYETVFLLFKRLNSTGLFP 357
           G C+ G++                              +    +  F L K ++S G+ P
Sbjct: 223 GFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQP 282

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +L +YN++IN  C+ G +   + I   +    FTPD VT+ +L+
Sbjct: 283 NLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLL 326


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 155/322 (48%), Gaps = 32/322 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++  L   L  +      + LF R++  G+FP+  TYN LIN   +  R+ + FV
Sbjct: 352 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL  + R+  +P+ VT+  +IK  C      +A  +   +   G   ++ TYNT+I G C
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYC 471

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS-FS 265
            +G+T  AL + + M +G       C+PD  +Y+ +I G CK          S M S F 
Sbjct: 472 DSGNTTSALRILDLMRDGG------CKPDEWSYTELICGFCK---------ISKMESAFG 516

Query: 266 ALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
             N+M           LC N   +  LIDG CK  KL  A  L + + R+G  PNV TYN
Sbjct: 517 LFNEMVD-------DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 569

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           +LI GL         +       L K +   G+FP++ TY  +I+  CK G  S    +F
Sbjct: 570 VLIHGLTKQNNFSGAEE------LCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMF 623

Query: 383 GRILPSCFTPDAVTFTSLIKIL 404
            +++     P+ +T++SLI+ L
Sbjct: 624 NKMIEQGCLPNLLTYSSLIRAL 645



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 146/332 (43%), Gaps = 42/332 (12%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ML+    R  + +++ L   L++      V+  + R+   G+ P+   YN +IN  CK G
Sbjct: 170 MLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDG 229

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V+    ++ ++  S  +PD  T+TS+I   C +  +  A  +F ++   GCE +  TY+
Sbjct: 230 NVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYS 289

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TLINGLC +G    A +L  EM                    I+ G+   A        +
Sbjct: 290 TLINGLCDSGRVNEAFDLIREM--------------------ILHGILPTA-------HT 322

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLC---------LIDGLCKISKLKIARELFQSLP 310
           C     AL  M  Y    R+     N  C         LI GLC    LK+A  LF  + 
Sbjct: 323 CTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMS 382

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R G+ PN VTYN LI  L       E +  +  F++   +   G  P++ TYN +I  +C
Sbjct: 383 RDGVFPNTVTYNALINILV------ENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYC 436

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            +G      ++   +L    + + VT+ ++IK
Sbjct: 437 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIK 468



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 145/312 (46%), Gaps = 29/312 (9%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
            +++  C +K     T +S    L+ +GL    + Y+ L+    ++G  +       R+L
Sbjct: 149 IHLIKSCHSKEAMART-MSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRML 207

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL--DVFTYNTLINGLCRTGH 210
                P+ + + ++I  LC +  + +A  +  K  VF  E+  D FTY ++I G CR   
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKK--VFESEMSPDTFTYTSMILGHCRKHD 265

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              AL +F +MA         CEP+ +TYST+I+GLC ++G  N        +F  + +M
Sbjct: 266 LDSALQVFNQMAKEG------CEPNTVTYSTLINGLC-DSGRVN-------EAFDLIREM 311

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
             +  L      C      I  LC +   + A  LF  +   G  PNV TY  LI GLC 
Sbjct: 312 ILHGILPTAHT-CTG---PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCV 367

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G +      +    LF R++  G+FP+  TYN LIN   +  R+   FV+   +  +  
Sbjct: 368 SGLL------KVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGC 421

Query: 391 TPDAVTFTSLIK 402
           +P+ VT+  +IK
Sbjct: 422 SPNIVTYNEMIK 433



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 138/336 (41%), Gaps = 36/336 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V ++N+L   L K  ++     L K +   G+FP+  TY  +I+  CK G  S    
Sbjct: 562 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 621

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  +++     P+ +T++SLI+ L  E ++ EA  LF +L   G   D  TY  +I    
Sbjct: 622 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 681

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN------------ 254
            +G    A N    M          C+P   TY  +I GL  E   A+            
Sbjct: 682 MSGKVEHAFNFLGRMIKAG------CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPN 735

Query: 255 -FLGFS-----CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
              G+       ++  SA  K+A   P + VQ        L+  L    +   A EL  S
Sbjct: 736 CSFGYQTTDQDAVSVMSA--KLAELDPGLSVQVQN----ALVSNLSTAGRWFEANELLGS 789

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   GL P+   YN L   LC+   +   ++ +    +FK +++ G    L  Y  LI  
Sbjct: 790 MISQGLCPDQEAYNSL---LCS---LLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICA 843

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            C++ R     + F  +L   + PD V    LI  L
Sbjct: 844 LCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGL 879



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 128/332 (38%), Gaps = 95/332 (28%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P +A+ V + ML  R     + ++N +      + +  + L +   +   G  PD ++Y 
Sbjct: 441 PKKAMLVMNNMLQ-RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYT 499

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI  FCK+ ++   F +   ++     P+ VT+T+LI   C + ++  A +L   ++  
Sbjct: 500 ELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS 559

Query: 190 GCELDVFTYNTLI-----------------------------------NGLCRTGHTIVA 214
           GC  +V TYN LI                                   +GLC+ G T +A
Sbjct: 560 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 619

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
           L +F +M     E G  C P+ +TYS++I  L +E                         
Sbjct: 620 LEMFNKMI----EQG--CLPNLLTYSSLIRALGQEG------------------------ 649

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
                                  K++ A  LF  L R GL+P+ +TY  +I      G++
Sbjct: 650 -----------------------KVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKV 686

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
                 E  F    R+   G  P L+TY +LI
Sbjct: 687 ------EHAFNFLGRMIKAGCQPTLWTYGVLI 712



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 62/287 (21%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +++SC + +A+  T    D+ ++S               G  + +F Y+ L+  L R G
Sbjct: 150 HLIKSCHSKEAMARTMSFLDMLSQS---------------GLRMGLFAYSALLIHLSRLG 194

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
            T   ++ +  M +     GV  +P+ + Y+ +I+ LCK+   A+          S ++ 
Sbjct: 195 MTAAVMDRYHRMLSE----GV--QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSP 248

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
             F             +  +I G C+   L  A ++F  + + G  PN VTY+ LI GLC
Sbjct: 249 DTF------------TYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 296

Query: 330 NDGQMDE---------------TKH--------------YETVFLLFKRLNSTGLFPDLY 360
           + G+++E               T H              YE  + LF  + + G  P++Y
Sbjct: 297 DSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVY 356

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           TY  LI+  C  G +     +F R+      P+ VT+ +LI IL  N
Sbjct: 357 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVEN 403



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N L++     GR      +LG ++     PD   + SL+  L     +  A  +F  +  
Sbjct: 768 NALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMST 827

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            GCE+ +  Y  LI  LC+      A   FE M            PD +  + +IDGL +
Sbjct: 828 QGCEVHLNGYKELICALCQLHRRKEARITFENM------LMRTWNPDDVVQAVLIDGLLR 881

Query: 249 EA 250
           + 
Sbjct: 882 DG 883


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 161/357 (45%), Gaps = 43/357 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + + M   R   P V ++N +     + +  D      +++   G  PD  TY  
Sbjct: 126 DEAVALVETMAE-RGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTA 184

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  FCK   V  G  +LG + R  FTPD VT++++I  LC   R+ +A  +F ++    
Sbjct: 185 LIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---S 241

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
           C     TYN+LI G CR G    A+ L  +M +        C PD +TY+T++   CK  
Sbjct: 242 CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDK------CAPDVVTYTTLMSAFCKMG 295

Query: 249 ---------EAGSANFLGFSCMASFSAL-----------NKMAFYFPLVRVQC--LCLNF 286
                    +   AN L    + +F++L           + +     + R  C      +
Sbjct: 296 RLDDAYELFQQMVANKLSPD-VVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTY 354

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
            C++DG CK ++++ A EL       G +PN VTYNIL+ G C  G+ D+   Y      
Sbjct: 355 NCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQY------ 408

Query: 347 FKRLNSTG--LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +LNS G      +  Y I+++  C+ GR       +  ++   + P A TF +++
Sbjct: 409 LDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVV 465



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 190/409 (46%), Gaps = 50/409 (12%)

Query: 9   GRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLE--QFLKERCKSSGEGDIT 66
           GR+R A  + R+   +   + P + T T  +    K R   +  Q L+E   +    D T
Sbjct: 19  GRLRHALGVYRQMNDA---HPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNT 75

Query: 67  SITPN-EALCVFDYMLNMRP---------SRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
           ++T   ++LC+ D + + R                +++ L   L K +  D  ++L + +
Sbjct: 76  TLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETM 135

Query: 117 NLTGLFPDRYTYNILINCFCKMGRV--SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174
              G  P   TYN +I  FC+  RV  +HGF  + +++     PD +T+T+LI   C   
Sbjct: 136 AERGCAPTVVTYNSIITGFCRARRVDEAHGF--MEQMVAEGCHPDIITYTALIGGFCKSR 193

Query: 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234
            +     L  ++   G   D+ TY+T+I+GLC+ G    A+++FEEM+         C P
Sbjct: 194 DVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---------CAP 244

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDG 292
            AITY+++I G C+ AG  +        +   L KM      V  +C    + +  L+  
Sbjct: 245 TAITYNSLIGGYCR-AGDMD-------EAIRLLGKM------VDDKCAPDVVTYTTLMSA 290

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
            CK+ +L  A ELFQ +    L P+VVT+  L+ GLC +G+M      E    L + +  
Sbjct: 291 FCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRM------EDALELLEEITR 344

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G  P +YTYN +++ +CK  +V     +        F P+ VT+  L+
Sbjct: 345 RGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILV 393



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 142/339 (41%), Gaps = 72/339 (21%)

Query: 123 PDRYTYNILINCFCKMGRVSHGF----------------------------------VVL 148
           P    +N++I   C+ GR+ H                                     VL
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQVL 62

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
             ++ +   PD  T T +++ LC   R+ +A  L  ++   G   +  TY+ L++GLC+ 
Sbjct: 63  QEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKC 122

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-SCMASFSAL 267
                A+ L E MA    E G  C P  +TY++II G C+        GF   M +    
Sbjct: 123 ERLDEAVALVETMA----ERG--CAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCH 176

Query: 268 NKMAFYFPLVRVQCLC----------------------LNFLCLIDGLCKISKLKIAREL 305
             +  Y  L+   C                        + +  +IDGLCK  +L+ A ++
Sbjct: 177 PDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDI 236

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F+ +  A   P  +TYN LI G C  G MDE         L  ++      PD+ TY  L
Sbjct: 237 FEEMSCA---PTAITYNSLIGGYCRAGDMDE------AIRLLGKMVDDKCAPDVVTYTTL 287

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++ FCK+GR+   + +F +++ +  +PD VTFTSL+  L
Sbjct: 288 MSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGL 326



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 128/291 (43%), Gaps = 22/291 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L G   +    D  + L  ++      PD  TY  L++ FCKMGR+   + +
Sbjct: 244 PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYEL 303

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++ +  +PD VTFTSL+  LC E R+ +A  L  ++   GC   ++TYN +++G C+
Sbjct: 304 FQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCK 363

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A    EE+       G V  P+ +TY+ ++ G C+   +   L +        L
Sbjct: 364 ANQVRKA----EELVADFRSRGFV--PNTVTYNILVAGCCRAGRTDQALQY-----LDQL 412

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N      P          +  ++D LC+  +   A + ++ + + G +P   T+  ++  
Sbjct: 413 NSEGGPCPTSVAM-----YAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFA 467

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           LC   Q  +         L + +   G  P   T + +++ +C+ G +   
Sbjct: 468 LCKAHQPQQAHE------LLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKA 512



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 2/136 (1%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYT-YNILINCFCKMGRVSHGF 145
           P   ++NIL     +    D  L    +LN  G   P     Y I+++  C+ GR     
Sbjct: 384 PNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAV 443

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
                +++  + P A TF +++  LC   +  +A  L  ++  +G      T + +++  
Sbjct: 444 QFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAY 503

Query: 206 CRTGHTIVALNLFEEM 221
           CR G    A  L  E+
Sbjct: 504 CRAGMIQKADELASEL 519


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 149/314 (47%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V SFN+L G   +    +  L  +K +    + PD  +++ LI  F + G + H    
Sbjct: 262 PDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEY 321

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      PD V +T +I   C    ++EA  +  ++  FGC  DV TYNTL+NGLC+
Sbjct: 322 LREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCK 381

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                  L+  EE+ N   E GV   PD  T++T+I G C++      L F     F  +
Sbjct: 382 ERR----LSDAEELLNEMKERGV--PPDLCTFTTLIHGYCRDGNIEKALQF-----FDTI 430

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +         R++   + +  LIDG+C+   L  A EL+  +    + PN VTY+ILI  
Sbjct: 431 SDQ-------RLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDS 483

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  GQ+D        F     + + G+ P++ TYN +I  +C+ G VS G     ++  
Sbjct: 484 HCEKGQVD------NAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRH 537

Query: 388 SCFTPDAVTFTSLI 401
               PD +T+ +LI
Sbjct: 538 DKVMPDLITYNTLI 551



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 167/341 (48%), Gaps = 32/341 (9%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           GD+ +     A+ + D M++ +  +P + ++N +   L +   +D    +F+ ++  G+ 
Sbjct: 208 GDVEA-----AMALIDSMVS-KGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVA 261

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD  ++N+LI  FC+ G +         +     TPD V+F+ LI        +  AA  
Sbjct: 262 PDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEY 321

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             ++R FG   D   Y  +I G CR G  + AL + +EM      FG  C PD +TY+T+
Sbjct: 322 LREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMV----AFG--CLPDVVTYNTL 375

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFY-FPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           ++GLCKE   ++        +   LN+M     P      LC  F  LI G C+   ++ 
Sbjct: 376 LNGLCKERRLSD--------AEELLNEMKERGVP----PDLC-TFTTLIHGYCRDGNIEK 422

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A + F ++    L P++VTYN LI G+C  G + +         L+  ++S  +FP+  T
Sbjct: 423 ALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANE------LWDDMHSREIFPNHVT 476

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           Y+ILI+  C+ G+V + F     ++     P+ +T+ S+IK
Sbjct: 477 YSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIK 517



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 161/345 (46%), Gaps = 29/345 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL  +  M   R + P V SF+ L G   +    D      + +   GL PD   Y +
Sbjct: 281 EEALRFYKEMRGRRVT-PDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTM 339

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I  FC+ G +     V   ++     PD VT+ +L+  LC E R+ +A  L  +++  G
Sbjct: 340 VIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERG 399

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ T+ TLI+G CR G+   AL  F+ +++          PD +TY+T+IDG+C++ 
Sbjct: 400 VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQR------LRPDIVTYNTLIDGMCRQG 453

Query: 251 --GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
             G AN L +  M S          FP        + +  LID  C+  ++  A      
Sbjct: 454 DLGKANEL-WDDMHSRE-------IFP------NHVTYSILIDSHCEKGQVDNAFAFLDE 499

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G++PN++TYN +I+G C  G + + + +        ++    + PDL TYN LI+ 
Sbjct: 500 MVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQF------LPKMRHDKVMPDLITYNTLIHG 553

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           + K G++   F +   +      PDAVT+  +I    ++   ++ 
Sbjct: 554 YVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEA 598



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 6/158 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++IL     +    D   +    +   G+ P+  TYN +I  +C+ G VS G   
Sbjct: 472 PNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQF 531

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++      PD +T+ +LI     E ++ EA  L   +     + D  TYN +I+G   
Sbjct: 532 LPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSV 591

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
            G+   A  ++++M    G  G+  EPD  TY ++I+G
Sbjct: 592 HGNMQEADWVYKKM----GARGI--EPDRYTYMSMING 623



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A    D M+N +   P + ++N +     ++ +         ++    + PD  TYN 
Sbjct: 491 DNAFAFLDEMVN-KGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNT 549

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ + K G++   F +L  +      PDAVT+  +I        + EA  ++ K+   G
Sbjct: 550 LIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARG 609

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            E D +TY ++ING    G++  +  L +EM
Sbjct: 610 IEPDRYTYMSMINGHVVAGNSKKSFQLHDEM 640



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 24/257 (9%)

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  +L S  TP    F  LI+      +  EA   F  L      +     N L+  L 
Sbjct: 76  IVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAALS 135

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G   +  + +  + + N E       +  T + ++   CK       L F  + +  +
Sbjct: 136 RAGWPHLTADAYRLVLSSNSEV------NTYTLNIMVHSYCKT------LQFGEVDTVIS 183

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +    FP V      +    ++D   +   ++ A  L  S+   G+ P +VTYN +++
Sbjct: 184 EMEKRCVFPDV------VTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLK 237

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL  +G+ D+ +       +F+ +++ G+ PD+ ++N+LI  FC+ G +      +  + 
Sbjct: 238 GLLRNGRWDKARE------VFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMR 291

Query: 387 PSCFTPDAVTFTSLIKI 403
               TPD V+F+ LI +
Sbjct: 292 GRRVTPDVVSFSCLIGL 308


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 142/321 (44%), Gaps = 24/321 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P V S++ +            VL L + + + GL P+ YTYN +I   CK G+
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V     VL  ++     PD V +T+LI   C    I  A  LF ++       D   Y  
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           +I GLCR G  + A  +F +M      F    EPD +TY+T+IDG CK            
Sbjct: 121 VICGLCRCGKMMEADKVFNKM------FSRGVEPDEVTYTTLIDGYCKSG--------EM 166

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             +FS  N+M        V    + +  L DGLCK+ ++  A EL   +   GL  N+ T
Sbjct: 167 EKAFSLHNQMVQSGLTPNV----VTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICT 222

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN L+ GLC  G + +         L + +   G++PD  T+  L++ +CK G +     
Sbjct: 223 YNSLVNGLCKSGNIRQ------AVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHE 276

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +   +L     P  +TF  L+
Sbjct: 277 LLREMLDRGLQPTVITFNVLM 297



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 159/324 (49%), Gaps = 28/324 (8%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           + M+  +P + ++N +   L K+   D    + + +   G+ PD   Y  LI+ FCK+G 
Sbjct: 36  MQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGN 95

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +   + +   + +    PD + +T++I  LC   ++MEA  +F K+   G E D  TY T
Sbjct: 96  IQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTT 155

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGF 258
           LI+G C++G    A +L  +M     + G+   P+ +TY+ + DGLCK  +  +AN L  
Sbjct: 156 LIDGYCKSGEMEKAFSLHNQMV----QSGLT--PNVVTYTALADGLCKLGQVDTANELLH 209

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                   LN             +C  +  L++GLCK   ++ A +L + +  AG+ P+ 
Sbjct: 210 EMCGKGLQLN-------------IC-TYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDT 255

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           +T+  L+   C  G+M   K +E    L + +   GL P + T+N+L+N FC  G +  G
Sbjct: 256 ITFTTLMDAYCKTGEM--VKAHE----LLREMLDRGLQPTVITFNVLMNGFCMSGMLEDG 309

Query: 379 FVIFGRILPSCFTPDAVTFTSLIK 402
             +   +L     P+  T+ SL+K
Sbjct: 310 ERLLAWMLEKGIMPNTTTYNSLMK 333



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 146/317 (46%), Gaps = 37/317 (11%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
            +F ++   G+ PD  TY  LI+ +CK G +   F +  ++++S  TP+ VT+T+L   L
Sbjct: 136 KVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGL 195

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C   ++  A  L  ++   G +L++ TYN+L+NGLC++G+   A+ L EEM    G +  
Sbjct: 196 CKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVA-GMY-- 252

Query: 231 VCEPDAITYSTIIDGLCK--EAGSANFL---------------------GFSCMASFSAL 267
              PD IT++T++D  CK  E   A+ L                     GF CM+     
Sbjct: 253 ---PDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGF-CMSGMLED 308

Query: 268 NKMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            +    + L + +      +  L+   C  + ++   E+++ +   G+MP+  TYNILI+
Sbjct: 309 GERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIK 368

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C    M E       + L K +   G      +YN +I  F K  ++S    +F  + 
Sbjct: 369 GHCKARNMKE------AWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMR 422

Query: 387 PSCFTPDAVTFTSLIKI 403
                 DA  +   + I
Sbjct: 423 REGMAADAEIYNLFVDI 439



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 36/255 (14%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++N L   L K+ +    + L + + + G++PD  T+  L++ +CK G +     +L 
Sbjct: 220 ICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLR 279

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +L     P  +TF  L+   C    + +   L   +   G   +  TYN+L+   C   
Sbjct: 280 EMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRN 339

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG--SANFL-------GFSC 260
           +      +++ M       GV+  PD+ TY+ +I G CK      A FL       GF+ 
Sbjct: 340 NMRCTTEIYKGMC----ARGVM--PDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNL 393

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
            AS                     ++  +I G  K  K+  ARELF+ + R G+  +   
Sbjct: 394 TAS---------------------SYNSIIKGFFKKKKISEARELFEEMRREGMAADAEI 432

Query: 321 YNILIRGLCNDGQMD 335
           YN+ +     +G M+
Sbjct: 433 YNLFVDISYGEGNME 447



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 59/135 (43%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +F  L     KT        L + +   GL P   T+N+L+N FC  G +  G  +
Sbjct: 253 PDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERL 312

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L     P+  T+ SL+K  C  + +     ++  +   G   D  TYN LI G C+
Sbjct: 313 LAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCK 372

Query: 208 TGHTIVALNLFEEMA 222
             +   A  L +EMA
Sbjct: 373 ARNMKEAWFLHKEMA 387



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 58/133 (43%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T++N L        +      ++K +   G+ PD  TYNILI   CK   +   + +
Sbjct: 323 PNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFL 382

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +    F   A ++ S+IK    + +I EA  LF ++R  G   D   YN  ++    
Sbjct: 383 HKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYG 442

Query: 208 TGHTIVALNLFEE 220
            G+   AL L +E
Sbjct: 443 EGNMETALELCDE 455


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 155/330 (46%), Gaps = 26/330 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  + + M    P  P   ++  +   L KTK  D  L+  + +   G+ PD + YN 
Sbjct: 97  EEARELIEKMARYAP--PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNF 154

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++  C+  +V    ++  ++++    P+ VT+ +LI  LC   RI  A  LF ++   G
Sbjct: 155 VLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKG 214

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
                 +YNTLI+G C+    + A ++F++M   N      C P+ +TY+T+IDGL K  
Sbjct: 215 YVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSN------CVPNVVTYTTLIDGLSKSG 268

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                      A+   L+ M        V      + CLIDG CK+ ++  A +L + + 
Sbjct: 269 --------KVQAAAEVLDGMVKKGVTPNVA----TYSCLIDGFCKVRRVDEAHKLLEQMV 316

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P VVTYNIL+  LC   ++      E  F LF+ +      P + TYN L+   C
Sbjct: 317 TQGIAPTVVTYNILLNSLCRADKL------EDAFKLFRGMAQRRCHPTVVTYNTLLRALC 370

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
              ++     ++  ++     PDA+T+ +L
Sbjct: 371 HHKQLDGAHRLYAEMIAKGCPPDAITYDTL 400



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 139/284 (48%), Gaps = 28/284 (9%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD  TY  ++   CK  R+      +  +      PDA  +  ++  LC E ++ EA  L
Sbjct: 112 PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 171

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F K+       +V TYNTLINGLC+      A  LF+EMA G G       P  ++Y+T+
Sbjct: 172 FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMA-GKGYV-----PTEVSYNTL 225

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLK 300
           IDG CK+           +A+    +KM      VR  C+   + +  LIDGL K  K++
Sbjct: 226 IDGFCKKK--------DLVAAKDVFDKM------VRSNCVPNVVTYTTLIDGLSKSGKVQ 271

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A E+   + + G+ PNV TY+ LI G C   ++DE         L +++ + G+ P + 
Sbjct: 272 AAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHK------LLEQMVTQGIAPTVV 325

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           TYNIL+N  C+  ++   F +F  +      P  VT+ +L++ L
Sbjct: 326 TYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRAL 369



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 135/286 (47%), Gaps = 25/286 (8%)

Query: 116 LNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175
           + L  + P   T+N + + F K GR+     V   ++ + +T  A  +  LI  LC    
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
             EA  L   +R+   +     Y+T+IN LC+      A  L E+MA           PD
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMAR-------YAPPD 113

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
           A+TY  I++ LCK     + L      +   +   AF +          NF  ++ GLC+
Sbjct: 114 ALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIY----------NF--VLSGLCQ 161

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
             K++ AR LF+ + +  + PNVVTYN LI GLC   ++      ET + LFK +   G 
Sbjct: 162 EEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRI------ETAYELFKEMAGKGY 215

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            P   +YN LI+ FCK   + +   +F +++ S   P+ VT+T+LI
Sbjct: 216 VPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLI 261



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 123/280 (43%), Gaps = 21/280 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  +F+ M+  R + P V ++N L   L K    +T   LFK +   G  P   +YN 
Sbjct: 166 EEARLLFEKMVKQRIN-PNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 224

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ FCK   +     V  +++RS   P+ VT+T+LI  L    ++  AA +   +   G
Sbjct: 225 LIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG 284

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +V TY+ LI+G C+      A  L E+M       G+   P  +TY+ +++ LC+  
Sbjct: 285 VTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ----GIA--PTVVTYNILLNSLCRAD 338

Query: 251 GSAN-FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              + F  F  MA               R     + +  L+  LC   +L  A  L+  +
Sbjct: 339 KLEDAFKLFRGMAQR-------------RCHPTVVTYNTLLRALCHHKQLDGAHRLYAEM 385

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
              G  P+ +TY+ L  GL   G++ E +       L KR
Sbjct: 386 IAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKR 425


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 148/318 (46%), Gaps = 27/318 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   L K +       L + +  +G  PD +TY  LI  FCK  +      V
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG-CELDVFTYNTLINGLC 206
             +++   F PD VT++ LI  LC E R+ EA  LF ++   G C  +  TYN+LI+G C
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G    A+NL E MA           PD +TY+T+++G CK A   +        ++  
Sbjct: 172 RMGKMDEAMNLLERMAETGS------SPDVVTYTTLMNGFCKLARLDD--------AYDL 217

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           LN+M        V    + F  L+DGLC+ ++L  A  +   + R    P V TYN ++ 
Sbjct: 218 LNQMTRKGLTPNV----VTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILD 273

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C   Q++E + +         L      P++ ++NI+I   CK+ R S    +     
Sbjct: 274 GYCRVNQLEEARKF--------MLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR 325

Query: 387 PSCFTPDAVTFTSLIKIL 404
                PD V +T++I +L
Sbjct: 326 RRRCNPDVVMYTTVIDVL 343



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 146/300 (48%), Gaps = 31/300 (10%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDR 125
           S   ++AL VF+ ++  R  RP V +++ L   L K       + LF R+  +G   P+ 
Sbjct: 102 SKKSDDALRVFEQLV-ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNT 160

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            TYN LI+ FC+MG++     +L R+  +  +PD VT+T+L+   C  +R+ +A  L  +
Sbjct: 161 VTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQ 220

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +   G   +V T+ +L++GLCR      A+++  EM   +      C P   TY+TI+DG
Sbjct: 221 MTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKS------CSPTVYTYNTILDG 274

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIAR 303
            C+     N L            + A  F L  + C    ++F  +I GLCK+++   A 
Sbjct: 275 YCR----VNQL------------EEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAM 318

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           EL +   R    P+VV Y  +I  LC + ++D     E   +  K L   G  P+  TY+
Sbjct: 319 ELVEEARRRRCNPDVVMYTTVIDVLCREKKVD-----EACRVYRKMLEEPGCLPNSITYS 373



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           A  +P  VTYN LI GLC   +  E       + L + +  +G  PD++TY  LI  FCK
Sbjct: 48  AEEVPTAVTYNSLISGLCKAERASE------AYDLLEEMVYSGCIPDIFTYTTLITGFCK 101

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             +      +F +++   F PD VT++ LI  L
Sbjct: 102 SKKSDDALRVFEQLVARGFRPDVVTYSCLIDGL 134


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 151/317 (47%), Gaps = 24/317 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R + P   ++  +   L KTK  D  L+  + +   G+ PD + YN +++  C+  +V  
Sbjct: 3   RYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEE 62

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
             ++  ++++    P+ VT+ +LI  LC   RI  A  LF ++   G      +YNTLI+
Sbjct: 63  ARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLID 122

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G C+    + A ++F++M   N      C P+ +TY+T+IDGL K             A+
Sbjct: 123 GFCKKKDLVAAKDVFDKMVRSN------CVPNVVTYTTLIDGLSKSG--------KVQAA 168

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              L+ M        V      + CLIDG CK+ ++  A +L + +   G+ P VVTYNI
Sbjct: 169 AEVLDGMVKKGVTPNVA----TYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNI 224

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L+  LC   ++      E  F LF+ +      P + TYN L+   C   ++     ++ 
Sbjct: 225 LLNSLCRADKL------EDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYA 278

Query: 384 RILPSCFTPDAVTFTSL 400
            ++     PDA+T+ +L
Sbjct: 279 EMIAKGCPPDAITYDTL 295



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 139/284 (48%), Gaps = 28/284 (9%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD  TY  ++   CK  R+      +  +      PDA  +  ++  LC E ++ EA  L
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F K+       +V TYNTLINGLC+      A  LF+EMA G G       P  ++Y+T+
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMA-GKGYV-----PTEVSYNTL 120

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLK 300
           IDG CK+           +A+    +KM      VR  C+   + +  LIDGL K  K++
Sbjct: 121 IDGFCKKK--------DLVAAKDVFDKM------VRSNCVPNVVTYTTLIDGLSKSGKVQ 166

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A E+   + + G+ PNV TY+ LI G C   ++DE         L +++ + G+ P + 
Sbjct: 167 AAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHK------LLEQMVTQGIAPTVV 220

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           TYNIL+N  C+  ++   F +F  +      P  VT+ +L++ L
Sbjct: 221 TYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRAL 264



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 123/280 (43%), Gaps = 21/280 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  +F+ M+  R + P V ++N L   L K    +T   LFK +   G  P   +YN 
Sbjct: 61  EEARLLFEKMVKQRIN-PNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 119

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ FCK   +     V  +++RS   P+ VT+T+LI  L    ++  AA +   +   G
Sbjct: 120 LIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG 179

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +V TY+ LI+G C+      A  L E+M       G+   P  +TY+ +++ LC+  
Sbjct: 180 VTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ----GIA--PTVVTYNILLNSLCRAD 233

Query: 251 GSAN-FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              + F  F  MA               R     + +  L+  LC   +L  A  L+  +
Sbjct: 234 KLEDAFKLFRGMAQR-------------RCHPTVVTYNTLLRALCHHKQLDGAHRLYAEM 280

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
              G  P+ +TY+ L  GL   G++ E +       L KR
Sbjct: 281 IAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKR 320


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 166/331 (50%), Gaps = 31/331 (9%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           FD ML+   + P V ++NIL   L    H    LS+ + +   G  P+  TYN L+  F 
Sbjct: 178 FDSMLSDGVA-PNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFF 236

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           + G V     ++G +      P+ VTF S++  +C   ++ +A  +F ++   G   D  
Sbjct: 237 RAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGV 296

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           +YNTL+ G C+ G +  AL++F EM     + G++  PD +T++++I  +CK AG+    
Sbjct: 297 SYNTLVGGYCKAGCSHEALSVFAEMT----QKGIM--PDVVTFTSLIHVMCK-AGN---- 345

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAG 313
                     L +       +R + L +N   F  LIDG CK   L  A    + + +  
Sbjct: 346 ----------LERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCR 395

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           + P+VV YN LI G C  G+MDE +       L   + + GL PD+ TY+ +I+ +CK  
Sbjct: 396 IKPSVVCYNALINGYCMVGRMDEARE------LLHEMEAKGLKPDVVTYSTIISAYCKNC 449

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              S F +  ++L     PDA+T++SLI++L
Sbjct: 450 DTHSAFELNQQMLEKGVLPDAITYSSLIRVL 480



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 148/338 (43%), Gaps = 59/338 (17%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N L          D    L   +   GL PD  TY+ +I+ +CK       F 
Sbjct: 397 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE 456

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L     PDA+T++SLI+ LC E R+ +A  LF  +   G + D FTY +LI+G C
Sbjct: 457 LNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHC 516

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G+   AL+L ++M       GV+  PD +TYS +I+GL K A               A
Sbjct: 517 KEGNVESALSLHDKMVKA----GVL--PDVVTYSVLINGLSKSA--------------RA 556

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGL---CKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +      F L     +  N     D L   C+ ++LK                   +   
Sbjct: 557 MEAQQLLFKLYHEDPIPAN--TKYDALMHCCRKAELK-------------------SVLA 595

Query: 324 LIRGLCNDGQMDET-KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           L++G C  G M+E  K Y++  +L +  N  G       Y++LI+  C+ G V       
Sbjct: 596 LLKGFCMKGLMNEADKVYQS--MLDRNWNLDG-----SVYSVLIHGHCRAGNVMKALSFH 648

Query: 383 GRILPSCFTPDAVTFTSLIK-------ILEINSFFRQV 413
            ++L   F P++ +  SLI+       ++E +   +Q+
Sbjct: 649 KQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQL 686



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 31/249 (12%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           + P  + + +++  L +++ +  A   F  +   G   +V+TYN L+  LC  GH   AL
Sbjct: 152 YVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEAL 210

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---GSANFLGFSCMASFSALNKMAF 272
           ++  +M       G  C P+ +TY+T++    +     G+   +G         + +   
Sbjct: 211 SILRDMR------GAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGM--------MREGGL 256

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              LV        F  +++G+CK  K++ AR++F  + R GL P+ V+YN L+ G C  G
Sbjct: 257 KPNLV-------TFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAG 309

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
              E         +F  +   G+ PD+ T+  LI+  CK G +     +  ++       
Sbjct: 310 CSHEA------LSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQM 363

Query: 393 DAVTFTSLI 401
           + VTFT+LI
Sbjct: 364 NEVTFTALI 372



 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 17/151 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP----------------DRYTYNIL 131
           P  T ++ L  C  K +   +VL+L K   + GL                  D   Y++L
Sbjct: 573 PANTKYDALMHCCRKAE-LKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVL 631

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  C+ G V        ++L+  F P++ +  SLI+ L     ++EA  +  +L  +  
Sbjct: 632 IHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCS 691

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
             D      LI+     G+    L++   MA
Sbjct: 692 LADAEASKALIDLNLNEGNVDAVLDVLHGMA 722


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 155/328 (47%), Gaps = 31/328 (9%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  R S P V ++NIL             L  F  +   G  P+  TYN LI+ +CKMG
Sbjct: 1   MIRSRVS-PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMG 59

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           R+   F +L  +      P+ +++  +I  LC E  + EA  +  ++   G   D  TYN
Sbjct: 60  RIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYN 119

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TL+NG C+ G+   AL +  EM   NG       P  +TY+ +I+ +CK           
Sbjct: 120 TLLNGYCKEGNFHQALVIHAEMVR-NG-----VSPSVVTYTALINSMCKA---------- 163

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
                  LN+   +F  +R++ L  N   +  LIDG  +   L  A  +   +  +G  P
Sbjct: 164 -----RNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSP 218

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           +VVTYN  I G C   +M+E         + + +   GL PD+ +Y+ +I+ FC+ G + 
Sbjct: 219 SVVTYNAFIHGHCVLERMEE------ALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELD 272

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             F +   ++    +PDAVT++SLI+ L
Sbjct: 273 RAFQMKQEMVEKGVSPDAVTYSSLIQGL 300



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 155/338 (45%), Gaps = 20/338 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  + + M     S P V ++N         +  +  L + + +   GL PD  +Y+ 
Sbjct: 202 NEAYRILNEMTESGFS-PSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 260

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+ FC+ G +   F +   ++    +PDAVT++SLI+ LC   R+ EA  L  ++   G
Sbjct: 261 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 320

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D FTY TLIN  C  G    AL+L +EM +     G +  PDA+TYS +I+GL K+A
Sbjct: 321 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHK----GFL--PDAVTYSVLINGLNKQA 374

Query: 251 GS--ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF---LCLIDGLCKISKLKIAREL 305
            +  A  L F  +   S  + +  Y  L+   C  + F   + LI G C    +  A  +
Sbjct: 375 RTREAKRLLFKLIYEESVPSDVT-YDTLIE-NCSNIEFKSVVALIKGFCMKGLMHEADRV 432

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F+S+      P    YN++I G C  G + +       F L+K +  +G  P   T   L
Sbjct: 433 FESMVERNHKPGEAVYNVIIHGHCRGGNLPK------AFNLYKEMIHSGFVPHTVTVITL 486

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           I    K G       + G  L SC   +A     L++I
Sbjct: 487 IKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEI 524



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 148/352 (42%), Gaps = 46/352 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A+  FD M  +R  RP   ++  L    ++    +    +   +  +G  P   TYN 
Sbjct: 167 NRAMEFFDQM-RIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNA 225

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I+  C + R+     V+  ++     PD V+++++I   C +  +  A  +  ++   G
Sbjct: 226 FIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKG 285

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  TY++LI GLC       A +L +EM +      +   PD  TY+T+I+  C E 
Sbjct: 286 VSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLD------MGLPPDEFTYTTLINAYCVEG 339

Query: 251 GSANFLGFSCMASFSALNK-MAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQ 307
                           LNK +  +  ++    L   + +  LI+GL K ++ + A+ L  
Sbjct: 340 ---------------DLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLF 384

Query: 308 SLPRAGLMPNVVTYNI---------------LIRGLCNDGQMDETKHYETVFLLFKRLNS 352
            L     +P+ VTY+                LI+G C  G M E         +F+ +  
Sbjct: 385 KLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADR------VFESMVE 438

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               P    YN++I+  C+ G +   F ++  ++ S F P  VT  +LIK L
Sbjct: 439 RNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKAL 490


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 162/344 (47%), Gaps = 32/344 (9%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           FD ML+ + S P   ++  L     +        +LF  +   GL PD  TY  LI+ +C
Sbjct: 386 FDEMLSKKIS-PDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYC 444

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           K G + + F +   +++   TP+ VT+ +LI  LC    +  A  L  ++R  G +L+V 
Sbjct: 445 KAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVC 504

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
            YN+++NG+C+ G+   A+ L +EM           +PDAITY+T+ID  C+        
Sbjct: 505 IYNSMVNGICKAGNIEQAIKLMKEMEVAG------IDPDAITYTTVIDAYCR-------- 550

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
               +      +K+        +Q   + F  L++G C +  L+    L   +   G++P
Sbjct: 551 ----LGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVP 606

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           + +TYN L++  C    M+ T        ++KR+ + G+ PD  TYNILI   CK   + 
Sbjct: 607 DAITYNTLMKQHCIRNSMNTTTK------IYKRMRNQGVAPDSNTYNILIKGHCKARNLK 660

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
             + ++  ++   + P   ++ +LI       KILE    F ++
Sbjct: 661 EAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEM 704



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 142/321 (44%), Gaps = 24/321 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R S P V S++ +             L L   + + GL P+RYTYN +I   CK+G+
Sbjct: 284 MDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGK 343

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 VL  ++     PD V +T+LI        +  A   F ++       D  TY T
Sbjct: 344 SFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTT 403

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI G  + G  I   NLF EM +         +PD +TY+T+ID  CK     N      
Sbjct: 404 LIQGFGQGGKVIEPQNLFHEMISRG------LKPDEVTYTTLIDVYCKAGEMVN------ 451

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             +FS  N+M      + +    + +  LIDGLCK  +L  A EL   + + GL  NV  
Sbjct: 452 --AFSLHNEMV----QMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCI 505

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN ++ G+C  G +      E    L K +   G+ PD  TY  +I+ +C++G +     
Sbjct: 506 YNSMVNGICKAGNI------EQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHK 559

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +   +L     P  VTF  L+
Sbjct: 560 LLQEMLDRGLQPTVVTFNVLM 580



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 139/315 (44%), Gaps = 28/315 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +F+I F  L +  H      L  +L   GL     + N  ++   ++   S G  +
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLS---RIANNSEGIEM 244

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
             ++      + +  ++  +I  LC   ++ EA  L  ++       DV +Y+T+I+G C
Sbjct: 245 AIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYC 304

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    AL L ++M           +P+  TY++II  LCK       +G S  A    
Sbjct: 305 HLGELKKALKLMDDMQIKG------LKPNRYTYNSIILLLCK-------IGKSFEAEKVL 351

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
              M+      ++    + +  LI G  K+  ++ A + F  +    + P+ +TY  LI+
Sbjct: 352 REMMS-----QKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQ 406

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G    G++ E ++      LF  + S GL PD  TY  LI+ +CK G + + F +   ++
Sbjct: 407 GFGQGGKVIEPQN------LFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMV 460

Query: 387 PSCFTPDAVTFTSLI 401
               TP+ VT+ +LI
Sbjct: 461 QMGMTPNIVTYGALI 475



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 114/284 (40%), Gaps = 32/284 (11%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+   ++I      ++G +S    +L ++L         +  + +  +   S  +E A  
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMA-- 245

Query: 183 FTKLRVF---GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
              ++VF   G   +  +YN +I  LCR G    A  L  +M   +        PD ++Y
Sbjct: 246 ---IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSST------PDVVSY 296

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           ST+IDG C        L          L    + +          N + L+  LCKI K 
Sbjct: 297 STVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTY----------NSIILL--LCKIGKS 344

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A ++ + +    ++P+ V Y  LI G    G      H  T    F  + S  + PD 
Sbjct: 345 FEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLG------HVRTANKWFDEMLSKKISPDY 398

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
            TY  LI  F + G+V     +F  ++     PD VT+T+LI +
Sbjct: 399 ITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDV 442



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 18/245 (7%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N +   + K  + +  + L K + + G+ PD  TY  +I+ +C++G +     +L  +L
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                P  VTF  L+   C    + +   L   +   G   D  TYNTL+   C      
Sbjct: 566 DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMN 625

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
               +++ M N     GV   PD+ TY+ +I G CK    A  L  +       + K   
Sbjct: 626 TTTKIYKRMRNQ----GVA--PDSNTYNILIKGHCK----ARNLKEAWFLYKEMIEKG-- 673

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
           Y P V       ++  LI    K  K+  ARELF+ +   GL+ +   YN  +     +G
Sbjct: 674 YVPTVT------SYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEG 727

Query: 333 QMDET 337
            ++ T
Sbjct: 728 DVEIT 732



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 61/133 (45%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L          +T   ++KR+   G+ PD  TYNILI   CK   +   + +
Sbjct: 606 PDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFL 665

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++   + P   ++ +LIK    + +I+EA  LF ++R  G   D   YN  ++    
Sbjct: 666 YKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYE 725

Query: 208 TGHTIVALNLFEE 220
            G   + LNL +E
Sbjct: 726 EGDVEITLNLCDE 738



 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+  N  +YNI+I  LC  G++ E         L  +++     PD+ +Y+ +I+ +C +
Sbjct: 253 GISWNTTSYNIIIYSLCRLGKVKEAHR------LLMQMDFRSSTPDVVSYSTVIDGYCHL 306

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G +     +   +      P+  T+ S+I +L
Sbjct: 307 GELKKALKLMDDMQIKGLKPNRYTYNSIILLL 338


>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
 gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
          Length = 438

 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 160/326 (49%), Gaps = 26/326 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYTYNILINCFCK 137
           L +R     + SFN     +A+      V SLF R+   G   + PD  TY+ILI C C+
Sbjct: 49  LPLRGWGASIYSFNRTLTDVARDSPAAAV-SLFNRMARAGADEVTPDLCTYSILIGCCCR 107

Query: 138 MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKLRVFGCELDVF 196
            GR+  GF  LG +++  F  +A+TF  L+K LCA+ R  +A  +   ++    C  DVF
Sbjct: 108 AGRLDLGFAALGNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVF 167

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           +   L+ GLC    +  AL L   MA+   + G    PD ++Y+T+I+G  KE  S    
Sbjct: 168 SCTILLKGLCDENRSQEALELLHMMAD---DRGGGSPPDVVSYTTVINGFFKEGDSDK-- 222

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
                 ++S  ++M       R+    + +  +I  LCK   +  A E+  ++ + G+MP
Sbjct: 223 ------AYSTYHEMLDR----RISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMP 272

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           + +TYN ++ G C+ GQ  E           K++ S G+ P++ TY  L+N  CK GR +
Sbjct: 273 DCMTYNSILHGYCSSGQPKE------AIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCT 326

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIK 402
               IF  +      PD  T+ +L++
Sbjct: 327 EARKIFDSMTKRGLEPDIATYRTLLQ 352



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 118/275 (42%), Gaps = 26/275 (9%)

Query: 71  NEALCVFDYMLNMRP--SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
            EAL +   M + R   S P V S+  +     K    D   S +  +    + P+  TY
Sbjct: 183 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTY 242

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           + +I   CK   +     VL  ++++   PD +T+ S++   C+  +  EA     K+R 
Sbjct: 243 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS 302

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G E +V TY +L+N LC+ G    A  +F+ M           EPD  TY T++ G   
Sbjct: 303 DGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRG------LEPDIATYRTLLQGY-- 354

Query: 249 EAGSANFLGFSCMASFSALNKM-AFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIAREL 305
                        A+  AL +M A    +VR  +Q     F  LI    K  K+  A  +
Sbjct: 355 -------------ATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLV 401

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
           F  + + GL PNVV Y  +I  LC  G +D+   Y
Sbjct: 402 FSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLY 436



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 24/229 (10%)

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A  +  +L + G    ++++N  +  + R      A++LF  MA    +      PD  T
Sbjct: 42  ARHVLDELPLRGWGASIYSFNRTLTDVARD-SPAAAVSLFNRMARAGAD---EVTPDLCT 97

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           YS +I G C  AG  + LGF   A+   + K  F     RV+ +   F  L+ GLC   +
Sbjct: 98  YSILI-GCCCRAGRLD-LGF---AALGNVIKKGF-----RVEAI--TFAPLLKGLCADKR 145

Query: 299 LKIAREL-FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF- 356
              A ++  + +     MP+V +  IL++GLC     DE +  E + LL    +  G   
Sbjct: 146 TSDAMDIVLRRMTELSCMPDVFSCTILLKGLC-----DENRSQEALELLHMMADDRGGGS 200

Query: 357 -PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            PD+ +Y  +IN F K G     +  +  +L    +P+ VT++S+I  L
Sbjct: 201 PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAAL 249



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 1/158 (0%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
            G  +S  P EA+     M +     P V ++  L   L K         +F  +   GL
Sbjct: 282 HGYCSSGQPKEAIGTLKKMRS-DGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGL 340

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TY  L+  +   G +     +L  ++R+   PD   F  LI     + ++ +A  
Sbjct: 341 EPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAML 400

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
           +F+K+R  G   +V  Y T+I+ LC++G    A+  FE
Sbjct: 401 VFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFE 438


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 172/381 (45%), Gaps = 84/381 (22%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + SFNIL  C          LS F +L   G  P   T+N L++  C   RVS    +  
Sbjct: 15  IYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFH 74

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           ++ +    P+ VTFT+L+  LC E R++EA AL  ++   G + +  TY T+++G+C+ G
Sbjct: 75  QMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMG 130

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA---------------- 253
            T+ ALNL  +M     E   + +PD + YS IIDGL K+                    
Sbjct: 131 DTVSALNLLRKME----ELSHI-KPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFP 185

Query: 254 NFLGFSCM-----------------------------ASFSAL-NKMAFYFPLVRVQCL- 282
           + + +SCM                              +FS L N +     L   Q L 
Sbjct: 186 DIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLL 245

Query: 283 --------CLNFL---CLIDGLCKISKLKIARELFQSLPRA-----------GLMPNVVT 320
                   C N +    L+DGLC   KLK A E+F+++ ++           G+ P+V T
Sbjct: 246 QEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQT 305

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YNILI GL N+G+  E +       L++ +   G+ PD  TY+ +IN  CK  R+     
Sbjct: 306 YNILISGLINEGKFLEAEE------LYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQ 359

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +F  +    F+P+ VTF +LI
Sbjct: 360 MFDSMGSKSFSPNIVTFNTLI 380



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 145/281 (51%), Gaps = 27/281 (9%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D Y++NILI CFC   ++       G++ +  F P  VTF +L+  LC E R+ EA  LF
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            ++    C+ +V T+ TL+NGLCR G  + A+ L + M     E G+  +P+ ITY TI+
Sbjct: 74  HQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMV----EDGL--QPNQITYGTIV 123

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           DG+CK   +            SALN +     L  ++   + +  +IDGL K  +   A+
Sbjct: 124 DGMCKMGDTV-----------SALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQ 172

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            LF  +   G+ P++VTY+ +I G C+ G+  E +      L+ K      + PD+ T++
Sbjct: 173 NLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRK------ISPDVVTFS 226

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            LIN   K G ++S   +   ++ S   P+ VT  +L+  L
Sbjct: 227 GLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGL 267



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 152/334 (45%), Gaps = 23/334 (6%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +   M  +   +P V  ++ +   L K   +    +LF  +   G+FPD  TY+ +I
Sbjct: 135 ALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMI 194

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N FC  G+ S    +L  +L    +PD VTF+ LI  L  E  +  A  L  ++   G  
Sbjct: 195 NGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC 254

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-----CEPDAITYSTIIDGLC 247
            +V T NTL++GLC +G    AL +F+ M     +          EPD  TY+ +I GL 
Sbjct: 255 PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLI 314

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
            E              F    ++    P   +    + +  +I+GLCK S+L  A ++F 
Sbjct: 315 NE------------GKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFD 362

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           S+      PN+VT+N LI G C  G +D+         LF  +   G+  +  TY  LI 
Sbjct: 363 SMGSKSFSPNIVTFNTLITGYCKAGMVDDG------LELFCEMGRRGIVANAITYITLIR 416

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            F K+G ++    IF  ++ S   PD +T  +++
Sbjct: 417 GFRKVGNINGSLDIFQEMISSGVYPDTITIRNML 450



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 161/366 (43%), Gaps = 50/366 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F  M      +P V +F  L   L +       ++L  R+   GL P++ TY  
Sbjct: 67  SEALDLFHQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 121

Query: 131 LINCFCKMGRVSHGFVVLGRILR-SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +++  CKMG       +L ++   S   PD V ++++I  L  + R  +A  LF +++  
Sbjct: 122 IVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDK 181

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEM----------------------ANGNGE 227
           G   D+ TY+ +ING C +G    A  L +EM                       + N  
Sbjct: 182 GIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSA 241

Query: 228 FGVVCE-------PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR-- 278
             ++ E       P+ +T +T++DGLC      + L       F A+ K           
Sbjct: 242 QDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEM-----FKAMQKSMMDIDATHAF 296

Query: 279 --VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
             V+     +  LI GL    K   A EL++ +P  G++P+ VTY+ +I GLC   ++DE
Sbjct: 297 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDE 356

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                    +F  + S    P++ T+N LI  +CK G V  G  +F  +       +A+T
Sbjct: 357 ATQ------MFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAIT 410

Query: 397 FTSLIK 402
           + +LI+
Sbjct: 411 YITLIR 416



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 10/125 (8%)

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
           +++ C   +F  LI   C  SKL  A   F  L + G  P +VT+N L+ GLC + ++ E
Sbjct: 9   LQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSE 68

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                    LF ++      P++ T+  L+N  C+ GRV     +  R++     P+ +T
Sbjct: 69  A------LDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQIT 118

Query: 397 FTSLI 401
           + +++
Sbjct: 119 YGTIV 123



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 55/134 (41%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++ +   L K    D    +F  +      P+  T+N LI  +CK G V  G  +
Sbjct: 336 PDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLEL 395

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + R     +A+T+ +LI+       I  +  +F ++   G   D  T   ++ GL  
Sbjct: 396 FCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWS 455

Query: 208 TGHTIVALNLFEEM 221
                 AL + EE+
Sbjct: 456 KEELKRALAMLEEL 469



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 9/149 (6%)

Query: 40  RLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGC 99
           R  V D  +    +   CK S          +EA  +FD M   +   P + +FN L   
Sbjct: 332 RGIVPDTVTYSSMINGLCKQS--------RLDEATQMFDSM-GSKSFSPNIVTFNTLITG 382

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
             K    D  L LF  +   G+  +  TY  LI  F K+G ++    +   ++ S   PD
Sbjct: 383 YCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPD 442

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            +T  +++  L ++  +  A A+  +L++
Sbjct: 443 TITIRNMLTGLWSKEELKRALAMLEELQM 471


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 172/381 (45%), Gaps = 84/381 (22%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + SFNIL  C          LS F +L   G  P   T+N L++  C   RVS    +  
Sbjct: 15  IYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFH 74

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           ++ +    P+ VTFT+L+  LC E R++EA AL  ++   G + +  TY T+++G+C+ G
Sbjct: 75  QMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMG 130

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA---------------- 253
            T+ ALNL  +M     E   + +PD + YS IIDGL K+                    
Sbjct: 131 DTVSALNLLRKME----ELSHI-KPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFP 185

Query: 254 NFLGFSCM-----------------------------ASFSAL-NKMAFYFPLVRVQCL- 282
           + + +SCM                              +FS L N +     L   Q L 
Sbjct: 186 DIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLL 245

Query: 283 --------CLNFL---CLIDGLCKISKLKIARELFQSLPRA-----------GLMPNVVT 320
                   C N +    L+DGLC   KLK A E+F+++ ++           G+ P+V T
Sbjct: 246 QEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQT 305

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YNILI GL N+G+  E +       L++ +   G+ PD  TY+ +IN  CK  R+     
Sbjct: 306 YNILISGLINEGKFLEAEE------LYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQ 359

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +F  +    F+P+ VTF +LI
Sbjct: 360 MFDSMGSKSFSPNIVTFNTLI 380



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 145/281 (51%), Gaps = 27/281 (9%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D Y++NILI CFC   ++       G++ +  F P  VTF +L+  LC E R+ EA  LF
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            ++    C+ +V T+ TL+NGLCR G  + A+ L + M     E G+  +P+ ITY TI+
Sbjct: 74  HQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMV----EDGL--QPNQITYGTIV 123

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           DG+CK   +            SALN +     L  ++   + +  +IDGL K  +   A+
Sbjct: 124 DGMCKMGDTV-----------SALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQ 172

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            LF  +   G+ P++VTY+ +I G C+ G+  E +      L+ K      + PD+ T++
Sbjct: 173 NLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRK------ISPDVVTFS 226

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            LIN   K G ++S   +   ++ S   P+ VT  +L+  L
Sbjct: 227 GLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGL 267



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 152/334 (45%), Gaps = 23/334 (6%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +   M  +   +P V  ++ +   L K   +    +LF  +   G+FPD  TY+ +I
Sbjct: 135 ALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMI 194

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N FC  G+ S    +L  +L    +PD VTF+ LI  L  E  +  A  L  ++   G  
Sbjct: 195 NGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVC 254

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-----CEPDAITYSTIIDGLC 247
            +V T NTL++GLC +G    AL +F+ M     +          EPD  TY+ +I GL 
Sbjct: 255 PNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLI 314

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
            E              F    ++    P   +    + +  +I+GLCK S+L  A ++F 
Sbjct: 315 NE------------GKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFD 362

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           S+      PN+VT+N LI G C  G +D+         LF  +   G+  +  TY  LI 
Sbjct: 363 SMGSKSFSPNIVTFNTLITGYCKAGMVDDG------LELFCEMGRRGIVANAITYITLIR 416

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            F K+G ++    IF  ++ S   PD +T  +++
Sbjct: 417 GFRKVGNINGSLDIFQEMISSGVYPDTITIRNML 450



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 161/366 (43%), Gaps = 50/366 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F  M      +P V +F  L   L +       ++L  R+   GL P++ TY  
Sbjct: 67  SEALDLFHQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 121

Query: 131 LINCFCKMGRVSHGFVVLGRILR-SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +++  CKMG       +L ++   S   PD V ++++I  L  + R  +A  LF +++  
Sbjct: 122 IVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDK 181

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEM----------------------ANGNGE 227
           G   D+ TY+ +ING C +G    A  L +EM                       + N  
Sbjct: 182 GIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSA 241

Query: 228 FGVVCE-------PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR-- 278
             ++ E       P+ +T +T++DGLC      + L       F A+ K           
Sbjct: 242 QDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEM-----FKAMQKSMMDIDATHAF 296

Query: 279 --VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
             V+     +  LI GL    K   A EL++ +P  G++P+ VTY+ +I GLC   ++DE
Sbjct: 297 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDE 356

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                    +F  + S    P++ T+N LI  +CK G V  G  +F  +       +A+T
Sbjct: 357 ATQ------MFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAIT 410

Query: 397 FTSLIK 402
           + +LI+
Sbjct: 411 YITLIR 416



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 10/125 (8%)

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
           +++ C   +F  LI   C  SKL  A   F  L + G  P +VT+N L+ GLC + ++ E
Sbjct: 9   LQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSE 68

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                    LF ++      P++ T+  L+N  C+ GRV     +  R++     P+ +T
Sbjct: 69  A------LDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQIT 118

Query: 397 FTSLI 401
           + +++
Sbjct: 119 YGTIV 123



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 55/134 (41%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++ +   L K    D    +F  +      P+  T+N LI  +CK G V  G  +
Sbjct: 336 PDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLEL 395

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + R     +A+T+ +LI+       I  +  +F ++   G   D  T   ++ GL  
Sbjct: 396 FCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWS 455

Query: 208 TGHTIVALNLFEEM 221
                 AL + EE+
Sbjct: 456 KEELKKALAMLEEL 469



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 9/149 (6%)

Query: 40  RLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGC 99
           R  V D  +    +   CK S          +EA  +FD M   +   P + +FN L   
Sbjct: 332 RGIVPDTVTYSSMINGLCKQS--------RLDEATQMFDSM-GSKSFSPNIVTFNTLITG 382

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
             K    D  L LF  +   G+  +  TY  LI  F K+G ++    +   ++ S   PD
Sbjct: 383 YCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPD 442

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            +T  +++  L ++  + +A A+  +L++
Sbjct: 443 TITIRNMLTGLWSKEELKKALAMLEELQM 471


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 151/319 (47%), Gaps = 26/319 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   ++N     L +  H    L +   +   G  PD +TYN +INC  K G +     
Sbjct: 299 EPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKG 358

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++ +++     PD  TF +LI  L +++R+ EA  L  +L V G   DV+T+N LIN LC
Sbjct: 359 IVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALC 418

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G   + + LFEEM +        C PD +TY+ +ID LC      N L          
Sbjct: 419 KVGDPHLGIRLFEEMKSSG------CTPDEVTYNILIDHLCSMGKLGNALDL-------- 464

Query: 267 LNKMAFYF-PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           LN+M     P   V      +  +ID LCK  +++ A E+F  +   G+  + VT+N LI
Sbjct: 465 LNEMESNGCPRSTV-----TYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLI 519

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC   ++D+         L +++   GL P+  TYN ++  +CK G +     I   +
Sbjct: 520 DGLCKAKRIDDATE------LIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETM 573

Query: 386 LPSCFTPDAVTFTSLIKIL 404
             + F  D VT+ +LI  L
Sbjct: 574 TANGFEIDVVTYGTLINGL 592



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 141/313 (45%), Gaps = 26/313 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FN L   L +      + S++  +   G+ PD  T N LI   C+  +V    ++L  + 
Sbjct: 165 FNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMS 224

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                PD  TFT+L++    E  I  A  +  K+   GC     T N LING C+ G   
Sbjct: 225 SHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVE 284

Query: 213 VALN-LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
            AL  + +E+A+G        EPD +TY+T + GLC+    ++ L    +      +   
Sbjct: 285 DALGYIQQEIADG-------FEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDV 337

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F +  V + CL  N            +L  A+ +   +   G +P+  T+N LI  L + 
Sbjct: 338 FTYNTV-INCLSKN-----------GELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQ 385

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
            +++E         L + L   GL PD+YT+NILIN  CK+G    G  +F  +  S  T
Sbjct: 386 NRLEE------ALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCT 439

Query: 392 PDAVTFTSLIKIL 404
           PD VT+  LI  L
Sbjct: 440 PDEVTYNILIDHL 452



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 138/317 (43%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T+F  L     +    +  L +  ++   G  P   T N+LIN +CKMGRV      
Sbjct: 230 PDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGY 289

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + + +   F PD VT+ + +  LC    +  A  +   +   G + DVFTYNT+IN L +
Sbjct: 290 IQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSK 349

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  +  +M +        C PD  T++T+I  L  +      L  +   +   L
Sbjct: 350 NGELDEAKGIVNQMVDRG------CLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGL 403

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +   + F +            LI+ LCK+    +   LF+ +  +G  P+ VTYNILI  
Sbjct: 404 SPDVYTFNI------------LINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDH 451

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC+ G++           L   + S G      TYN +I+  CK  R+     +F ++  
Sbjct: 452 LCSMGKLG------NALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDA 505

Query: 388 SCFTPDAVTFTSLIKIL 404
              +  AVTF +LI  L
Sbjct: 506 QGISRSAVTFNTLIDGL 522



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 149/335 (44%), Gaps = 27/335 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + + M++ R   P  T+FN L   L+     +  L L + L + GL PD YT+NI
Sbjct: 354 DEAKGIVNQMVD-RGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNI 412

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK+G    G  +   +  S  TPD VT+  LI  LC+  ++  A  L  ++   G
Sbjct: 413 LINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNG 472

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           C     TYNT+I+ LC+      A  +F++M A G           A+T++T+IDGLCK 
Sbjct: 473 CPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQG-------ISRSAVTFNTLIDGLCK- 524

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                              ++        +Q   + +  ++   CK   +K A ++ +++
Sbjct: 525 -----------AKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETM 573

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G   +VVTY  LI GLC  G+       +    L + +   G+ P    YN +I   
Sbjct: 574 TANGFEIDVVTYGTLINGLCKAGRT------QVALKLLRGMRIKGIRPTPKAYNPVIQSL 627

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +   +     +F  +      PDA+T+  + + L
Sbjct: 628 FRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSL 662



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 143/321 (44%), Gaps = 31/321 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FNIL   L K       + LF+ +  +G  PD  TYNILI+  C MG++ +   +
Sbjct: 405 PDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDL 464

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +  +      VT+ ++I  LC + RI EA  +F ++   G      T+NTLI+GLC+
Sbjct: 465 LNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCK 524

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG---SANFLGFSCMASF 264
                 A  L E+M           +P+ ITY++I+   CK+     +A+ L       F
Sbjct: 525 AKRIDDATELIEQMVKEG------LQPNNITYNSILTHYCKQGNIKKAADILETMTANGF 578

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
                          +   + +  LI+GLCK  + ++A +L + +   G+ P    YN +
Sbjct: 579 ---------------EIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPV 623

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR-VSSGFVIFG 383
           I+ L     + +  +      LF+ +   G  PD  TY I+    C+ G  +   F    
Sbjct: 624 IQSLFRRNNLRDALN------LFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLV 677

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            ++   F P+  +F  L + L
Sbjct: 678 EMVNKGFMPEFSSFRMLAEGL 698



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 138/340 (40%), Gaps = 31/340 (9%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P  AL + +  L      P    +  +   L     +D +  L + +   G         
Sbjct: 69  PEAALRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVR 128

Query: 130 ILINCFCKMGRVSHGF-VVLGRILRSCF--TPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
             +  + ++ R      +VL ++    F    D V F  L+  L   S++    +++ ++
Sbjct: 129 SFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEM 188

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G + DV T NTLI  LCR      A+ + EEM++     GV   PD  T++T++ G 
Sbjct: 189 TGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSS----HGVA--PDETTFTTLMQGF 242

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISKLKIARE 304
            +E         S  A+     KM      +   C    +    LI+G CK+ +++ A  
Sbjct: 243 IEEG--------SIEAALRVKAKM------MEAGCSPTGVTVNVLINGYCKMGRVEDALG 288

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
             Q     G  P+ VTYN  + GLC +G      H      +   +   G  PD++TYN 
Sbjct: 289 YIQQEIADGFEPDQVTYNTFVHGLCQNG------HVSHALKVMDLMLQEGHDPDVFTYNT 342

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +INC  K G +     I  +++     PD  TF +LI  L
Sbjct: 343 VINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVAL 382



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 24/220 (10%)

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           FG + D   +N L+N L       +  +++ EM       G   +PD +T +T+I  LC+
Sbjct: 156 FGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMT------GRGIQPDVVTLNTLIKALCR 209

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                         +   L +M+ +     V      F  L+ G  +   ++ A  +   
Sbjct: 210 --------AHQVRTAVLMLEEMSSHG----VAPDETTFTTLMQGFIEEGSIEAALRVKAK 257

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +  AG  P  VT N+LI G C  G++++   Y       ++  + G  PD  TYN  ++ 
Sbjct: 258 MMEAGCSPTGVTVNVLINGYCKMGRVEDALGY------IQQEIADGFEPDQVTYNTFVHG 311

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            C+ G VS    +   +L     PD  T+ ++I  L  N 
Sbjct: 312 LCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNG 351


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 166/378 (43%), Gaps = 49/378 (12%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +GD   + PN    VF  ML+ R   P V +F ++   L      D+  SL + +   G 
Sbjct: 182 DGDCPRVAPN----VFYDMLS-RGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGC 236

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+   Y  LI+  C+  RVS    +L  +   C  PD  TF  +I  LC   RI EAA 
Sbjct: 237 VPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAK 296

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN--------------GE 227
           L  ++ + G   D  TY  L++GLCR G    A  L  ++ N N              G 
Sbjct: 297 LLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGR 356

Query: 228 FG----------VVC--EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
           F           V+   EPDA T++ +IDGL K+           +++   LN+M     
Sbjct: 357 FEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKG--------YLVSALELLNEMV---- 404

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
             R +   + +  LI+G CK  +L+ A E+  S+   GL  N V YN LI  LC DG ++
Sbjct: 405 AKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIE 464

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           E         LF  ++  G  PD+YT+N LIN  CK  ++     ++  +       + V
Sbjct: 465 EA------LQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTV 518

Query: 396 TFTSLIKILEINSFFRQV 413
           T+ +L+    +    +Q 
Sbjct: 519 TYNTLVHAFLMRDSIQQA 536



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 157/344 (45%), Gaps = 47/344 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   +FNI+   L K  +  + L L   +      P+  TY ILIN FCK GR+     
Sbjct: 374 EPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAE 433

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  +     + + V +  LI  LC +  I EA  LF ++   GC+ D++T+N+LINGLC
Sbjct: 434 IVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLC 493

Query: 207 RTGHTIVALNLFEEM------ANG----------------NGEFGVV-------CEPDAI 237
           +      AL+L+ +M      AN                    F +V       C  D I
Sbjct: 494 KNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNI 553

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           TY+ +I  LCK       LG      F  +      FP + + C       LI GLC+  
Sbjct: 554 TYNGLIKALCKTGAVEKGLGL-----FEEMLGKGI-FPTI-ISC-----NILISGLCRTG 601

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           K+  A +  Q +   GL P++VTYN LI GLC  G + E  +      LF +L S G+ P
Sbjct: 602 KVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASN------LFNKLQSEGIRP 655

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           D  TYN LI+  C  G  +   ++  + + S F P+ VT++ LI
Sbjct: 656 DAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILI 699



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 129/300 (43%), Gaps = 60/300 (20%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +F  M + +  +P + +FN L   L K    +  LSL+  + L G+  +  TYN L
Sbjct: 465 EALQLFGEM-SGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTL 523

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ F     +   F ++  +L      D +T+  LIK LC    + +   LF ++   G 
Sbjct: 524 VHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGI 583

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              + + N LI+GLCRTG    AL   ++M +          PD +TY+++I+GLC    
Sbjct: 584 FPTIISCNILISGLCRTGKVNDALKFLQDMIHRG------LTPDIVTYNSLINGLC---- 633

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                      K+  ++ A  LF  L  
Sbjct: 634 -------------------------------------------KMGHVQEASNLFNKLQS 650

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+ P+ +TYN LI   C++G  +     +   LL+K ++S G  P+  T++ILIN   K
Sbjct: 651 EGIRPDAITYNTLISRHCHEGMFN-----DACLLLYKGVDS-GFIPNEVTWSILINYIVK 704



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 8/159 (5%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++N L   L KT   +  L LF+ +   G+FP   + NILI+  C+ G+V+     L  +
Sbjct: 554 TYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDM 613

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH- 210
           +    TPD VT+ SLI  LC    + EA+ LF KL+  G   D  TYNTLI+  C  G  
Sbjct: 614 IHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMF 673

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
               L L++ + +G         P+ +T+S +I+ + K+
Sbjct: 674 NDACLLLYKGVDSG-------FIPNEVTWSILINYIVKK 705


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 161/335 (48%), Gaps = 29/335 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL  F  M   R     V ++N L   L++   +  V      +   G  PD +T+ IL
Sbjct: 199 EALEFFKEM-EGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTIL 257

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK G+V     +L  +      PD +T+ +L+  LC   ++ +A  LF  L   G 
Sbjct: 258 IDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGI 317

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA- 250
           +L+VF+YN LING C+      A  LFEEM           +P  +TY+T+I  LC+   
Sbjct: 318 KLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKG------LKPSTVTYNTLIGALCQSGR 371

Query: 251 -GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
             +A  L F  M +     K++ Y       C+      L+DGLCK   L+ A +LFQS+
Sbjct: 372 VRTAQKL-FVEMQTCGQFLKLSTY-------CV------LLDGLCKNGHLEEAIDLFQSI 417

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            +    PN+  ++IL+ G+C  G+++E       +  F  ++  GL PD   YNILIN  
Sbjct: 418 KKTEHKPNIEVFSILLDGMCRAGKLEE------AWKQFDEISKNGLEPDTIAYNILINGL 471

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           C  G +S    +  ++      PD++TF  +I+ L
Sbjct: 472 CNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNL 506



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 142/296 (47%), Gaps = 25/296 (8%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
            + LF  +   GLF D  TY ILIN  CK  +      +  ++  +C   D  T+  +I 
Sbjct: 96  AVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGNC-KGDVFTYGMIID 154

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
            LC +    EA  +F+++   G   DV  Y++L++GLCR G    AL  F+EM       
Sbjct: 155 SLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEME------ 208

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
           G     D  TY+++I GL +         F  +      +  AF F +            
Sbjct: 209 GRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTI------------ 256

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LIDGLCK  K+  A+++ + +   G  P+++TYN L+ GLC  GQ+++         LF+
Sbjct: 257 LIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATK------LFE 310

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L   G+  ++++YNILIN +CK  ++   F +F  + P    P  VT+ +LI  L
Sbjct: 311 SLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGAL 366



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 150/318 (47%), Gaps = 40/318 (12%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL--NLTGLFPDRYTYN 129
           +A+ +FD M   +       ++ IL   L K +     + L +++  N  G   D +TY 
Sbjct: 95  DAVQLFDEMTE-KGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKG---DVFTYG 150

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           ++I+  CK G  +    +   ++ +   PD V ++SL+  LC   R+ EA   F ++   
Sbjct: 151 MIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGR 210

Query: 190 GCELDVFTYNTLINGLCRTG---HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           G   DV+TYN+LI+GL R G        LNL  +             PDA T++ +IDGL
Sbjct: 211 GISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG---------FSPDAFTFTILIDGL 261

Query: 247 CKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           CKE   G A             L       P +      L +  L++GLC + +L+ A +
Sbjct: 262 CKEGKVGEAQ--------QILELMHHKGKEPDI------LTYNTLMNGLCLVGQLEDATK 307

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           LF+SL   G+  NV +YNILI G C D ++DE       F LF+ +   GL P   TYN 
Sbjct: 308 LFESLADRGIKLNVFSYNILINGYCKDQKIDE------AFRLFEEMRPKGLKPSTVTYNT 361

Query: 365 LINCFCKIGRVSSGFVIF 382
           LI   C+ GRV +   +F
Sbjct: 362 LIGALCQSGRVRTAQKLF 379



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/251 (34%), Positives = 122/251 (48%), Gaps = 27/251 (10%)

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           L+  F PDAVT T+L+K +  E+ I +A  LF ++   G   D  TY  LINGLC+   T
Sbjct: 69  LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKT 128

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKM 270
            +A+ L E+M  GN      C+ D  TY  IID LCK+  +   L  FS M     L  +
Sbjct: 129 GLAIKLHEKM-KGN------CKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDV 181

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
             Y               L+DGLC+  +LK A E F+ +   G+  +V TYN LI GL  
Sbjct: 182 VVYS-------------SLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSR 228

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G   E   +  + L+  R    G  PD +T+ ILI+  CK G+V     I   +     
Sbjct: 229 AGLWKEVTWF--LNLMVDR----GFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGK 282

Query: 391 TPDAVTFTSLI 401
            PD +T+ +L+
Sbjct: 283 EPDILTYNTLM 293



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 141/330 (42%), Gaps = 60/330 (18%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + + M + +   P + ++N L   L      +    LF+ L   G+  + ++YNIL
Sbjct: 269 EAQQILELM-HHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNIL 327

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN +CK  ++   F +   +      P  VT+ +LI  LC   R+  A  LF +++  G 
Sbjct: 328 INGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQ 387

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            L + TY  L++GLC+ GH   A++LF+ +           +P+   +S ++DG+C+ AG
Sbjct: 388 FLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKK------TEHKPNIEVFSILLDGMCR-AG 440

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                         KL+ A + F  + +
Sbjct: 441 ----------------------------------------------KLEEAWKQFDEISK 454

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL P+ + YNILI GLCN G +      E V LL+ ++   G  PD  T+N++I    K
Sbjct: 455 NGLEPDTIAYNILINGLCNKGMLS-----EAVKLLW-QMEEKGCLPDSITFNVIIQNLLK 508

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              +     +   +    F+PD    + L+
Sbjct: 509 ENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 538



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 19/181 (10%)

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
           EPDA+T +T++ G+  E G  + +       F  + +   +            +  LI+G
Sbjct: 74  EPDAVTVTTLVKGVWMENGIPDAVQL-----FDEMTEKGLFGD-------AKTYGILING 121

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LCK  K  +A +L + + +     +V TY ++I  LC DG   E         +F  +  
Sbjct: 122 LCKARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTTE------ALDMFSEMIG 174

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            G+ PD+  Y+ L++  C+ GR+      F  +     + D  T+ SLI  L     +++
Sbjct: 175 AGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKE 234

Query: 413 V 413
           V
Sbjct: 235 V 235


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 156/339 (46%), Gaps = 34/339 (10%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  RP   ++N L   L K ++ D   +L      +G  PD  TY+IL +  CK GR+  
Sbjct: 74  RNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDE 133

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
            F ++  +  +  TP+ VT+ +LI  LC  S+  +A  L   L   G   DV TY  +++
Sbjct: 134 AFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVD 193

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCM 261
           GLC+ G    AL + E M          C P  ITY+ +++GLC+      A+ + F  M
Sbjct: 194 GLCKEGRLDKALKMVEGMLKRG------CTPSVITYTALMEGLCRTGRVDEAHHI-FKEM 246

Query: 262 ASFSALNKMAFYFPLVRVQCLCLN-------------------FLCLIDGLCKISKLKIA 302
            S         Y  LV   C                       +  L+DG CK  +L   
Sbjct: 247 VSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEI 306

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
             +F+ +   G +PN+ TYNI++ GLC  G++DE       F   + ++S G  PD+ +Y
Sbjct: 307 PNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDE------AFPFLESMHSAGCVPDVVSY 360

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           NI+I+   K  +      +  +++ +   PDAVT+ +L+
Sbjct: 361 NIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLM 399



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 142/305 (46%), Gaps = 24/305 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +N R   P V ++NIL   L K    D    +   +   G+ PD  T+N +++  CK G+
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +L  +      P   T+ +LI  LC +  +  A  L  +    G   DV TY+ 
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           L +GLC+ G    A  L +EM+ GNG     C P+ +TY+T+IDGLCK   S     +  
Sbjct: 121 LADGLCKRGRIDEAFELVKEMS-GNG-----CTPNLVTYNTLIDGLCK--ASKTEKAYEL 172

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           + +  +    + + P V      + +  ++DGLCK  +L  A ++ + + + G  P+V+T
Sbjct: 173 LETLVS----SGFVPDV------VTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVIT 222

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y  L+ GLC  G++DE  H      +FK + S     D   Y  L+N +CK  R      
Sbjct: 223 YTALMEGLCRTGRVDEAHH------IFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQK 276

Query: 381 IFGRI 385
           +   I
Sbjct: 277 VVDGI 281



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 158/371 (42%), Gaps = 58/371 (15%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EG +  I PN    VF+ M   R   P + ++NI+   L K    D      + ++  G 
Sbjct: 300 EGRLDEI-PN----VFEDMA-CRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGC 353

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  +YNI+I+   K  +      VL +++++   PDAVT+ +L+   C E R  +A  
Sbjct: 354 VPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVG 413

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +   +   G + D  TYNTLI+GL +T     A  L  EM   NG     C     TY+T
Sbjct: 414 ILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLR-NGCVVSAC----TTYNT 468

Query: 242 IIDGLCKEAGSANFLGFSCM-ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           IID LCKE          C+  +   ++ M  +     V+   + +   ID LCK  +L 
Sbjct: 469 IIDRLCKEG---------CLKQALLLMDHMTGHG----VEANTVTYNIFIDRLCKEGRLD 515

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD------------------------- 335
            A  L   +     + + V+Y  +I GLC   Q+D                         
Sbjct: 516 EASSLLSEMD---TLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLL 572

Query: 336 -----ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
                +TK  +    L + +   G  P + TYN++I C CK+ +V   + +F  +     
Sbjct: 573 IDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGI 632

Query: 391 TPDAVTFTSLI 401
              +V++T LI
Sbjct: 633 VASSVSYTVLI 643



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 24/247 (9%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           PD  T+  LI  LC  S+  +A+ +  ++   G   D  T+N++++GLC+ G    A +L
Sbjct: 8   PDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSL 67

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
              MA  N      C P   TY+T+I GLCK+         + +  F +    + + P V
Sbjct: 68  LAVMAERN------CRPSCCTYNTLISGLCKQQNVDR--AKTLVDEFVS----SGFVPDV 115

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                 + +  L DGLCK  ++  A EL + +   G  PN+VTYN LI GLC      + 
Sbjct: 116 ------VTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLC------KA 163

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
              E  + L + L S+G  PD+ TY I+++  CK GR+     +   +L    TP  +T+
Sbjct: 164 SKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITY 223

Query: 398 TSLIKIL 404
           T+L++ L
Sbjct: 224 TALMEGL 230



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 130/292 (44%), Gaps = 35/292 (11%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P EA  V D M+      P   ++N L     K + +D  + + K +   G+ PD  TYN
Sbjct: 373 PKEARQVLDQMIQAGIP-PDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYN 431

Query: 130 ILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            LI+   +  R+   + ++  +LR+ C      T+ ++I  LC E  + +A  L   +  
Sbjct: 432 TLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTG 491

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G E +  TYN  I+ LC+ G    A +L  EM             D ++Y+T+I GLCK
Sbjct: 492 HGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR---------DEVSYTTVIIGLCK 542

Query: 249 --EAGSANFLGFSCMA----------------SFSALNKMAFYFPLVR--VQCLC----L 284
             +   A+ L    +A                +F+   ++     L+   VQ  C    +
Sbjct: 543 AEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVI 602

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
            +  +I  LCK+ K+  A ELF  +   G++ + V+Y +LI GLC  G+  E
Sbjct: 603 TYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKE 654



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 2/148 (1%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGR 140
            M   R  V+   ++ G L K +  D    L + +  + GL    +T+N+LI+ F K  R
Sbjct: 523 EMDTLRDEVSYTTVIIG-LCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKR 581

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     +L  +++   +P  +T+  +I  LC   ++ +A  LF ++ V G      +Y  
Sbjct: 582 LDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTV 641

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEF 228
           LI GLC  G    AL + EEMA+ + E 
Sbjct: 642 LIYGLCGQGRGKEALQVLEEMASSDCEI 669



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 57/130 (43%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +FN+L     KTK  D  L+L + +   G  P   TYN++I C CK+ +V   + +   +
Sbjct: 568 TFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEM 627

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                   +V++T LI  LC + R  EA  +  ++    CE+D      L   L   G  
Sbjct: 628 AVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRG 687

Query: 212 IVALNLFEEM 221
             A  L   M
Sbjct: 688 EEAAELLRRM 697



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 1/116 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL + + M+  R   P V ++N++  CL K    D    LF  + + G+     +Y +
Sbjct: 583 DEALTLLELMVQ-RGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTV 641

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           LI   C  GR      VL  +  S    D +    L   L  + R  EAA L  ++
Sbjct: 642 LIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRM 697



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +N   + PD++TYNILI+  CK  +      +   ++    TPD VTF S++  L
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGL 55


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 160/348 (45%), Gaps = 34/348 (9%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           + S    EA  +F+ M       P V ++  +   L K    D  + L   +N TG  P+
Sbjct: 111 VKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPN 170

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
             TY++L+   CK GR   GF +L  + R  F PD + + +L+  LC   R+ EA  L  
Sbjct: 171 VITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQ 230

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
            +   GC   V TYN+L+   CR+     A  L + M+    E G  C PD I Y+T+I 
Sbjct: 231 LMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS----ERG--CPPDVINYNTVIA 284

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCK------I 296
           GLC++A                 +  A    +V  +C+   + +  +IDGLCK       
Sbjct: 285 GLCRDA--------------RLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDAD 330

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            KL+ A E+ + + + G  PN  TY ++I GLC        +  +    L +R+  + + 
Sbjct: 331 WKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCR------ARKSQQALALLRRMIDSEVV 384

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           PDL +++++I   CK   + + + IFG +      P+ V + +LI  L
Sbjct: 385 PDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL 432



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 147/320 (45%), Gaps = 29/320 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  L   L K    D    L   +   G+ P    +N +I   CK GR       
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGY 87

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG-CELDVFTYNTLINGLC 206
              +  +  TPD +TF  L+  L    R+ EA  +F  +     C  +V TY T+INGLC
Sbjct: 88  FKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLC 147

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A+ L + M N  G     C P+ ITYS +++GLCK AG  +         F+ 
Sbjct: 148 KDGKLDRAIELLDLM-NETG-----CCPNVITYSVLVEGLCK-AGRTD-------KGFTL 193

Query: 267 LNKMA--FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           L +M    + P V      + +  L++GLCK  +L  A EL Q + R+G  P VVTYN L
Sbjct: 194 LQEMTRRGFQPDV------IMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSL 247

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           +   C   Q+D        F L + ++  G  PD+  YN +I   C+  R+     +  +
Sbjct: 248 MELFCRSKQVDRA------FRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQ 301

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           ++ +   PD +T++++I  L
Sbjct: 302 MVAARCVPDVITYSTIIDGL 321



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 137/312 (43%), Gaps = 32/312 (10%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
            N     L +   +   + LF+        P+ +TY  LI+  CK G++   + +L  + 
Sbjct: 1   MNCALNLLVRAGQHGQAVQLFREERCV---PNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                P       +I+ LC   R  +A   F  +    C  D+ T+N L++ L ++G   
Sbjct: 58  DRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVE 117

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A  +FE M   +      C P+ +TY+T+I+GLCK+                 L++   
Sbjct: 118 EAFQIFESMHTSSQ-----CLPNVVTYTTVINGLCKDG---------------KLDRAIE 157

Query: 273 YFPLVRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
              L+     C N +    L++GLCK  +      L Q + R G  P+V+ YN L+ GLC
Sbjct: 158 LLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLC 217

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
              ++DE    E V L+ +    +G +P + TYN L+  FC+  +V   F +   +    
Sbjct: 218 KSRRLDEA--LELVQLMIR----SGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERG 271

Query: 390 FTPDAVTFTSLI 401
             PD + + ++I
Sbjct: 272 CPPDVINYNTVI 283



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 151/353 (42%), Gaps = 42/353 (11%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R  +P V  +N L   L K++  D  L L + +  +G +P   TYN L+  FC+  +
Sbjct: 197 MTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQ 256

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V   F ++  +      PD + + ++I  LC ++R+ +A AL  ++    C  DV TY+T
Sbjct: 257 VDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYST 316

Query: 201 LINGLCRTGHTIVALNLFE-----EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           +I+GLC+         L       EM    G     C P+A TY+ +I+GLC+   S   
Sbjct: 317 IIDGLCKDWRVDADWKLEAACEILEMMKQTG-----CPPNAGTYAVVIEGLCRARKSQQA 371

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLC------------------------LNFLCLID 291
           L        S +      F +V +  LC                        + +  LID
Sbjct: 372 LALLRRMIDSEVVPDLSSFSMV-IGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALID 430

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GL K  ++  A  +F+ +  +   P V TYN ++ GLC  G+++E         + + + 
Sbjct: 431 GLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAVR------MVEGMI 483

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               FPD  +Y  LI   C++  V   + +F  +    F  +   +  L+  L
Sbjct: 484 HKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNEL 536



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 123/262 (46%), Gaps = 33/262 (12%)

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
            P+  T+ SLI  LC   ++ +A  L  ++R  G    V  +N +I GLC+ G    AL 
Sbjct: 27  VPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALG 86

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFSALNKMAFYFP 275
            F+ +A      G  C PD IT++ ++D L K       F  F  M + S          
Sbjct: 87  YFKTVA------GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSS---------- 130

Query: 276 LVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
               QCL   + +  +I+GLCK  KL  A EL   +   G  PNV+TY++L+ GLC  G+
Sbjct: 131 ----QCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGR 186

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
            D+       F L + +   G  PD+  YN L+N  CK  R+     +   ++ S   P 
Sbjct: 187 TDKG------FTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPT 240

Query: 394 AVTFTSLIKIL----EINSFFR 411
            VT+ SL+++     +++  FR
Sbjct: 241 VVTYNSLMELFCRSKQVDRAFR 262



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 29/258 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSL------FKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           P V +++ +   L K    D    L       + +  TG  P+  TY ++I   C+  + 
Sbjct: 309 PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKS 368

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                +L R++ S   PD  +F+ +I  LC    +  A  +F  +    C+ +   Y  L
Sbjct: 369 QQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAAL 428

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           I+GL + G    A+ +FE M            P   TY++++DGLC             +
Sbjct: 429 IDGLSKGGEVDKAVRVFELMVESF-------RPGVATYNSVLDGLCG------------V 469

Query: 262 ASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
                  +M     ++  +C     ++  LI GLC++S ++ A ELFQ++   G    V 
Sbjct: 470 GRIEEAVRMV--EGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVG 527

Query: 320 TYNILIRGLCNDGQMDET 337
            YN+L+  LC   ++ + 
Sbjct: 528 VYNVLVNELCKKKRLSDA 545



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 3/129 (2%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M++ R  +P   ++  L   L+K    D  + +F+ L +    P   TYN +++  C +G
Sbjct: 412 MMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE-LMVESFRPGVATYNSVLDGLCGVG 470

Query: 140 RVSHGF-VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           R+     +V G I + CF PD  ++ +LI+ LC  S + EA  LF  +   G  ++V  Y
Sbjct: 471 RIEEAVRMVEGMIHKECF-PDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVY 529

Query: 199 NTLINGLCR 207
           N L+N LC+
Sbjct: 530 NVLVNELCK 538



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 2/116 (1%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ VF+ M+     RP V ++N +   L      +  + + + +     FPD  +Y  
Sbjct: 439 DKAVRVFELMVE--SFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGA 496

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           LI   C++  V   + +   +    F  +   +  L+ +LC + R+ +A  +  KL
Sbjct: 497 LIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKL 552


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 160/348 (45%), Gaps = 34/348 (9%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           + S    EA  +F+ M       P V ++  +   L K    D  + L   +N TG  P+
Sbjct: 111 VKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPN 170

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
             TY++L+   CK GR   GF +L  + R  F PD + + +L+  LC   R+ EA  L  
Sbjct: 171 VITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQ 230

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
            +   GC   V TYN+L+   CR+     A  L + M+    E G  C PD I Y+T+I 
Sbjct: 231 LMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS----ERG--CPPDVINYNTVIA 284

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCK------I 296
           GLC++A                 +  A    +V  +C+   + +  +IDGLCK       
Sbjct: 285 GLCRDA--------------RLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDAD 330

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            KL+ A E+ + + + G  PN  TY ++I GLC        +  +    L +R+  + + 
Sbjct: 331 WKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCR------ARKSQQALALLRRMIDSEVV 384

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           PDL +++++I   CK   + + + IFG +      P+ V + +LI  L
Sbjct: 385 PDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL 432



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 147/320 (45%), Gaps = 29/320 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  L   L K    D    L   +   G+ P    +N +I   CK GR       
Sbjct: 28  PNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGY 87

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG-CELDVFTYNTLINGLC 206
              +  +  TPD +TF  L+  L    R+ EA  +F  +     C  +V TY T+INGLC
Sbjct: 88  FKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLC 147

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A+ L + M N  G     C P+ ITYS +++GLCK AG  +         F+ 
Sbjct: 148 KDGKLDRAIELLDLM-NETG-----CCPNVITYSVLVEGLCK-AGRTD-------KGFTL 193

Query: 267 LNKMA--FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           L +M    + P V      + +  L++GLCK  +L  A EL Q + R+G  P VVTYN L
Sbjct: 194 LQEMTRRGFQPDV------IMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSL 247

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           +   C   Q+D        F L + ++  G  PD+  YN +I   C+  R+     +  +
Sbjct: 248 MELFCRSKQVDRA------FRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQ 301

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           ++ +   PD +T++++I  L
Sbjct: 302 MVAARCVPDVITYSTIIDGL 321



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 137/312 (43%), Gaps = 32/312 (10%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
            N     L +   +   + LF+        P+ +TY  LI+  CK G++   + +L  + 
Sbjct: 1   MNCALNLLVRAGQHGQAVQLFREERCV---PNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                P       +IK LC   R  +A   F  +    C  D+ T+N L++ L ++G   
Sbjct: 58  DRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVE 117

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A  +FE M   +      C P+ +TY+T+I+GLCK+                 L++   
Sbjct: 118 EAFQIFESMHTSSQ-----CLPNVVTYTTVINGLCKDG---------------KLDRAIE 157

Query: 273 YFPLVRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
              L+     C N +    L++GLCK  +      L Q + R G  P+V+ YN L+ GLC
Sbjct: 158 LLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLC 217

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
              ++DE    E V L+ +    +G +P + TYN L+  FC+  +V   F +   +    
Sbjct: 218 KSRRLDEA--LELVQLMIR----SGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERG 271

Query: 390 FTPDAVTFTSLI 401
             PD + + ++I
Sbjct: 272 CPPDVINYNTVI 283



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 151/353 (42%), Gaps = 42/353 (11%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R  +P V  +N L   L K++  D  L L + +  +G +P   TYN L+  FC+  +
Sbjct: 197 MTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQ 256

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V   F ++  +      PD + + ++I  LC ++R+ +A AL  ++    C  DV TY+T
Sbjct: 257 VDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYST 316

Query: 201 LINGLCRTGHTIVALNLFE-----EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           +I+GLC+         L       EM    G     C P+A TY+ +I+GLC+   S   
Sbjct: 317 IIDGLCKDWRVDADWKLEAACEILEMMKQTG-----CPPNAGTYAVVIEGLCRARKSQQA 371

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLC------------------------LNFLCLID 291
           L        S +      F +V +  LC                        + +  LID
Sbjct: 372 LALLRRMIDSEVVPDLSSFSMV-IGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALID 430

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GL K  ++  A  +F+ +  +   P V TYN ++ GLC  G+++E         + + + 
Sbjct: 431 GLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEEAVR------MVEGMI 483

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               FPD  +Y  LI   C++  V   + +F  +    F  +   +  L+  L
Sbjct: 484 HKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNEL 536



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 123/262 (46%), Gaps = 33/262 (12%)

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
            P+  T+ SLI  LC   ++ +A  L  ++R  G    V  +N +I GLC+ G    AL 
Sbjct: 27  VPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALG 86

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFSALNKMAFYFP 275
            F+ +A      G  C PD IT++ ++D L K       F  F  M + S          
Sbjct: 87  YFKTVA------GTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSS---------- 130

Query: 276 LVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
               QCL   + +  +I+GLCK  KL  A EL   +   G  PNV+TY++L+ GLC  G+
Sbjct: 131 ----QCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGR 186

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
            D+       F L + +   G  PD+  YN L+N  CK  R+     +   ++ S   P 
Sbjct: 187 TDKG------FTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPT 240

Query: 394 AVTFTSLIKIL----EINSFFR 411
            VT+ SL+++     +++  FR
Sbjct: 241 VVTYNSLMELFCRSKQVDRAFR 262



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 29/258 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSL------FKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           P V +++ +   L K    D    L       + +  TG  P+  TY ++I   C+  + 
Sbjct: 309 PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKS 368

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                +L R++ S   PD  +F+ +I  LC    +  A  +F  +    C+ +   Y  L
Sbjct: 369 QQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAAL 428

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           I+GL + G    A+ +FE M            P   TY++++DGLC             +
Sbjct: 429 IDGLSKGGEVDKAVRVFELMVESF-------RPGVATYNSVLDGLCG------------V 469

Query: 262 ASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
                  +M     ++  +C     ++  LI GLC++S ++ A ELFQ++   G    V 
Sbjct: 470 GRIEEAVRMV--EGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVG 527

Query: 320 TYNILIRGLCNDGQMDET 337
            YN+L+  LC   ++ + 
Sbjct: 528 VYNVLVNELCKKKRLSDA 545



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 3/129 (2%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M++ R  +P   ++  L   L+K    D  + +F+ L +    P   TYN +++  C +G
Sbjct: 412 MMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE-LMVESFRPGVATYNSVLDGLCGVG 470

Query: 140 RVSHGF-VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           R+     +V G I + CF PD  ++ +LI+ LC  S + EA  LF  +   G  ++V  Y
Sbjct: 471 RIEEAVRMVEGMIHKECF-PDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVY 529

Query: 199 NTLINGLCR 207
           N L+N LC+
Sbjct: 530 NVLVNELCK 538



 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 2/116 (1%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ VF+ M+     RP V ++N +   L      +  + + + +     FPD  +Y  
Sbjct: 439 DKAVRVFELMVE--SFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGA 496

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           LI   C++  V   + +   +    F  +   +  L+ +LC + R+ +A  +  KL
Sbjct: 497 LIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKL 552


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 33/342 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSF-NILFGCLAKTKHY------DTVLSLFKRLNLTGLFP 123
           ++AL + D ML  +   PP ++  +I+F  L+K          + ++ L  +     +FP
Sbjct: 209 DDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFP 268

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           +      LI+  C+ GR    + VL  +++     +A +  +L+  L           L 
Sbjct: 269 NSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLL 328

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            +++    + +V T+  LIN LC+      AL +FE+M NG    G + EPD ITY+T+I
Sbjct: 329 AEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKM-NGGESNGFLVEPDVITYNTLI 387

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL----NFLCLIDGLCKISKL 299
           DGLCK       LG                   +R Q  C+     + CLIDG CK S +
Sbjct: 388 DGLCKVGRQEEGLGL---------------VERMRSQPRCMPNTVTYNCLIDGYCKASMI 432

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
           + ARELF  + + G+ PNVVT N L+ G+C  G+++    +      F  +   GL  + 
Sbjct: 433 EAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEF------FNEMQGKGLKGNA 486

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            TY  LI  FC +  +     +F  +L +  +PDA+ + +LI
Sbjct: 487 VTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLI 528



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 157/326 (48%), Gaps = 40/326 (12%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLN---LTGLF--PDRYTYNILINCFCKMGRV 141
           +P V +F IL   L K +  D  L +F+++N     G    PD  TYN LI+  CK+GR 
Sbjct: 337 QPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQ 396

Query: 142 SHGFVVLGRILRS---CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
             G  ++ R +RS   C  P+ VT+  LI   C  S I  A  LF ++   G   +V T 
Sbjct: 397 EEGLGLVER-MRSQPRCM-PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTL 454

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           NTL++G+C+ G    A+  F EM  G G  G     +A+TY+ +I   C           
Sbjct: 455 NTLVDGMCKHGRINGAVEFFNEM-QGKGLKG-----NAVTYTALIRAFC----------- 497

Query: 259 SCMASFSALNK-MAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
               + + + K M  +  ++   C    + +  LI GL +  KL  A  +   +  AG  
Sbjct: 498 ----NVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFS 553

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P++V++N+LI G C   ++DE   YE    + K + + G+ PD  TYN LI+ F K G  
Sbjct: 554 PDIVSFNVLINGFCRKNKLDEA--YE----MLKEMENAGIKPDGVTYNTLISHFSKTGDF 607

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
           S+   +  +++     P  VT+ +LI
Sbjct: 608 STAHRLMKKMVKEGLVPTVVTYGALI 633



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 137/330 (41%), Gaps = 26/330 (7%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD M N     P V + N L   + K    +  +  F  +   GL  +  TY  LI  F
Sbjct: 438 LFDQM-NKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAF 496

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C +  +     +   +L +  +PDA+ + +LI  L    ++  A+ + +K++  G   D+
Sbjct: 497 CNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDI 556

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N LING CR      A  + +EM N         +PD +TY+T+I            
Sbjct: 557 VSFNVLINGFCRKNKLDEAYEMLKEMENAG------IKPDGVTYNTLIS----------- 599

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR-AGL 314
             FS    FS  +++        +    + +  LI   C    L  A ++F+ +   + +
Sbjct: 600 -HFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKV 658

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            PN V YNILI  LC   Q+D          L   +   G+ P+  T+N +     +   
Sbjct: 659 PPNTVIYNILINSLCRKNQVD------LALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNW 712

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +S  F +  R+      PD +T   L + L
Sbjct: 713 LSKAFELMDRMTEHACNPDYITMEILTEWL 742



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 1/125 (0%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYTYNILINCFCKMGRVSHGFV 146
           P V ++  L        + D  + +F+ ++ T  + P+   YNILIN  C+  +V     
Sbjct: 624 PTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALS 683

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  +      P+  TF ++ K L  ++ + +A  L  ++    C  D  T   L   L 
Sbjct: 684 LMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLS 743

Query: 207 RTGHT 211
             G T
Sbjct: 744 AVGET 748



 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 45/102 (44%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F  M +     P    +NIL   L +    D  LSL   + + G+ P+  T+N 
Sbjct: 643 DEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNA 702

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
           +     +   +S  F ++ R+      PD +T   L + L A
Sbjct: 703 MFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSA 744


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 163/335 (48%), Gaps = 28/335 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYTY 128
           +A  VFD +L  R     +   N     +A+      V S + R+   G   + P+  TY
Sbjct: 37  DARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTY 94

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKLR 187
            ILI   C  GR+  GF  LG +++  F  DA+ FT L+K LCA+ R  +A  +   ++ 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             GC  +VF+YN L+ GLC    +  AL L + M +  G+    C PD ++Y+T+I+G  
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGFF 210

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           KE             ++   ++M     L  V    + +  +I  LCK   +  A E+  
Sbjct: 211 KEG--------DLDKAYGTYHEMLDRGILPNV----VTYSSIIAALCKAQAMDKAMEVLT 258

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           S+ + G+MPN  TYN ++ G C+ GQ  E   +       K+++S G+ PD+ TYN L++
Sbjct: 259 SMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF------LKKMHSDGVEPDVVTYNSLMD 312

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             CK GR +    +F  +      P+  T+ +L++
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 145/312 (46%), Gaps = 24/312 (7%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           F+IL    AK    D  + +F ++   GL PD  TY  +I   CK GRV        +++
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
               +P  + + SLI  LC   +  +A  L  ++   G  LD   +N++I+  C+ G  I
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            +  LF+ M       GV  +PD ITYST+IDG C                     K+  
Sbjct: 497 ESEKLFDLMV----RIGV--KPDIITYSTLIDGYC------------LAGKMDEATKLLA 538

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
               V ++  C+ +  LI+G CKIS+++ A  LF+ +  +G+ P+++TYNI+++GL    
Sbjct: 539 SMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLF--- 595

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
              +T+       L+  +  +G   +L TYNI+++  CK         +F  +  +    
Sbjct: 596 ---QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652

Query: 393 DAVTFTSLIKIL 404
           +  TF  +I  L
Sbjct: 653 ETRTFNIMIGAL 664



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 135/304 (44%), Gaps = 29/304 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+  F+ M++ R S P    +N L   L     +D    L   +   G+  D   +N +
Sbjct: 427 DAMRYFEQMIDERLS-PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK GRV     +   ++R    PD +T+++LI   C   ++ EA  L   +   G 
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CKE 249
           + D  TYNTLING C+      AL LF EM +     GV   PD ITY+ I+ GL   + 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESS----GV--SPDIITYNIILQGLFQTRR 599

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
             +A  L      S + L    +                ++ GLCK +    A  +FQ+L
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNI--------------ILHGLCKNNLTDEALRMFQNL 645

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
               L     T+NI+I  L   G+ DE K       LF  L++ GL PD+ TY+++    
Sbjct: 646 CLTDLQLETRTFNIMIGALLKVGRNDEAKD------LFAALSANGLVPDVRTYSLMAENL 699

Query: 370 CKIG 373
            + G
Sbjct: 700 IEQG 703



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 152/384 (39%), Gaps = 59/384 (15%)

Query: 71  NEALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
            EAL +   M +     PP V S+  +     K    D     +  +   G+ P+  TY+
Sbjct: 179 QEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYS 238

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +I   CK   +     VL  ++++   P+  T+ S++   C+  +  EA     K+   
Sbjct: 239 SIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD 298

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G E DV TYN+L++ LC+ G    A  +F+ M           +P+  TY T++ G   +
Sbjct: 299 GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG------LKPEITTYGTLLQGYATK 352

Query: 250 AGSANFLG----------------FSCM----ASFSALNKMAFYFPLVRVQCL---CLNF 286
                  G                FS +    A    +++    F  +R Q L    + +
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTY 412

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH------- 339
             +I  LCK  +++ A   F+ +    L P  + YN LI  LC   + D+ K        
Sbjct: 413 GTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLD 472

Query: 340 ----YETVFL------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
                +T+F                   LF  +   G+ PD+ TY+ LI+ +C  G++  
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 532

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
              +   ++     PD VT+ +LI
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLI 556


>gi|356561399|ref|XP_003548969.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 422

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 160/331 (48%), Gaps = 61/331 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F+ ML MR + PP+  FN + G   K K+Y   +SL K++ + G+ P+  T NI
Sbjct: 36  DDAVSQFNRMLLMRHT-PPIIKFNKILGSPVKMKYYPAAISLSKQMEVKGIEPNLVTLNI 94

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LINCFC +G ++  F VLG+IL+  + P+ +T T+LIK LC +  + ++     KL   G
Sbjct: 95  LINCFCHLGHMAFSFSVLGKILKLGYQPNTLTLTTLIKGLCLKDEVRKSLHFHDKLVAQG 154

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +++  +  TL+NGLC+ G    A+ L   + + +    VV       Y+TIIDGLCK+ 
Sbjct: 155 FQINHVSCGTLLNGLCKIGEMRGAMKLLRVIEDRSTITNVV------MYNTIIDGLCKD- 207

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                           +N+                                A +L+  + 
Sbjct: 208 --------------KLVNE--------------------------------AYDLYSEMD 221

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  PNV+TY+ LI G C  GQ+ E       F L K +    + PD+YTYNIL++  C
Sbjct: 222 VRGNFPNVITYHTLICGFCLAGQLMEA------FGLLKEMILKNIDPDVYTYNILMDALC 275

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G+ S    +   I       D VT+TSL+
Sbjct: 276 KEGK-SYALDLIDEIHRRRQPADVVTYTSLL 305



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 120/280 (42%), Gaps = 37/280 (13%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           L    +L   G   +  +   L+N  CK+G +     +L  I       + V + ++I  
Sbjct: 144 LHFHDKLVAQGFQINHVSCGTLLNGLCKIGEMRGAMKLLRVIEDRSTITNVVMYNTIIDG 203

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
           LC +  + EA  L++++ V G   +V TY+TLI G C  G  + A  L +EM   N    
Sbjct: 204 LCKDKLVNEAYDLYSEMDVRGNFPNVITYHTLICGFCLAGQLMEAFGLLKEMILKN---- 259

Query: 230 VVCEPDAITYSTIIDGLCKEAGS---------------------ANFLGFSCMASFSALN 268
              +PD  TY+ ++D LCKE  S                      + L   C   +  L+
Sbjct: 260 --IDPDVYTYNILMDALCKEGKSYALDLIDEIHRRRQPADVVTYTSLLDGXCKNXY--LD 315

Query: 269 KMAFYFPLVRVQCLCLNFL--CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           K    F  ++ + +  N      + G  K  +LK A+E FQ L   G   +V TY ++I 
Sbjct: 316 KAIALFKKMKERRIQPNVYTHSXLTGCVKGGRLKNAQEFFQHLLVKGYCIDVWTYTVMIS 375

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           GLC +G +DE         +  ++   G  P+  T+ I+I
Sbjct: 376 GLCKEGMLDEA------LAMKXKMEDNGCIPNAVTFEIII 409



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 118/256 (46%), Gaps = 26/256 (10%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R+L    TP  + F  ++           A +L  ++ V G E ++ T N LIN  C  G
Sbjct: 44  RMLLMRHTPPIIKFNKILGSPVKMKYYPAAISLSKQMEVKGIEPNLVTLNILINCFCHLG 103

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
           H   + ++  ++        +  +P+ +T +T+I GLC +      L F         +K
Sbjct: 104 HMAFSFSVLGKI------LKLGYQPNTLTLTTLIKGLCLKDEVRKSLHFH--------DK 149

Query: 270 M-AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
           + A  F +  V C  L     ++GLCKI +++ A +L + +     + NVV YN +I GL
Sbjct: 150 LVAQGFQINHVSCGTL-----LNGLCKIGEMRGAMKLLRVIEDRSTITNVVMYNTIIDGL 204

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C D  ++E       + L+  ++  G FP++ TY+ LI  FC  G++   F +   ++  
Sbjct: 205 CKDKLVNEA------YDLYSEMDVRGNFPNVITYHTLICGFCLAGQLMEAFGLLKEMILK 258

Query: 389 CFTPDAVTFTSLIKIL 404
              PD  T+  L+  L
Sbjct: 259 NIDPDVYTYNILMDAL 274



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 109/251 (43%), Gaps = 26/251 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  +N +   L K K  +    L+  +++ G FP+  TY+ LI  FC  G++   F +L 
Sbjct: 194 VVMYNTIIDGLCKDKLVNEAYDLYSEMDVRGNFPNVITYHTLICGFCLAGQLMEAFGLLK 253

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     PD  T+  L+  LC E +   A  L  ++       DV TY +L++G C+  
Sbjct: 254 EMILKNIDPDVYTYNILMDALCKEGKSY-ALDLIDEIHRRRQPADVVTYTSLLDGXCKNX 312

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
           +   A+ LF++M           +P+  T+S +    C + G               L  
Sbjct: 313 YLDKAIALFKKMKERR------IQPNVYTHSXLTG--CVKGGR--------------LKN 350

Query: 270 MAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
              +F  + V+  C++   +  +I GLCK   L  A  +   +   G +PN VT+ I+I 
Sbjct: 351 AQEFFQHLLVKGYCIDVWTYTVMISGLCKEGMLDEALAMKXKMEDNGCIPNAVTFEIIIC 410

Query: 327 GLCNDGQMDET 337
            L    + D+ 
Sbjct: 411 SLFEKDENDKA 421



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 9/139 (6%)

Query: 72  EALC------VFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP 123
           +ALC        D +  +   R P  V ++  L     K  + D  ++LFK++    + P
Sbjct: 272 DALCKEGKSYALDLIDEIHRRRQPADVVTYTSLLDGXCKNXYLDKAIALFKKMKERRIQP 331

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           + YT++ L  C  K GR+ +       +L   +  D  T+T +I  LC E  + EA A+ 
Sbjct: 332 NVYTHSXLTGCV-KGGRLKNAQEFFQHLLVKGYCIDVWTYTVMISGLCKEGMLDEALAMK 390

Query: 184 TKLRVFGCELDVFTYNTLI 202
            K+   GC  +  T+  +I
Sbjct: 391 XKMEDNGCIPNAVTFEIII 409


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 150/321 (46%), Gaps = 30/321 (9%)

Query: 81  LNMRPSRPPVTS-FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           +  +P   P  S +N     L K+      + + K +      PD  T+N LI   CK G
Sbjct: 44  MEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAG 103

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           R+     VL  + RS F  + VT+ +LI  L +  R  EA  +   +       D  TYN
Sbjct: 104 RLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTP---DTQTYN 160

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            +I+G C++G    A    EEM    G     C PD  TYS +I+GLCK   S+N     
Sbjct: 161 AIIHGFCKSGEIDRAYGFLEEMKQRAG-----CSPDTFTYSILINGLCK---SSNL---- 208

Query: 260 CMASFSALNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
              +   L +M     + R  C    + F  L+DG CK   L  AREL  S+   G  P+
Sbjct: 209 -RKADELLQEM-----IGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPD 262

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           VVTY+ +I GLC  G +D+       F L +++ S G  PD+ TY +L+   CK G++  
Sbjct: 263 VVTYSTIIDGLCRCGDVDKG------FALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVE 316

Query: 378 GFVIFGRILPSCFTPDAVTFT 398
              +  R+L    TP+AVT++
Sbjct: 317 ACRLVKRMLEDGCTPNAVTYS 337



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 127/320 (39%), Gaps = 58/320 (18%)

Query: 82  NMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           NM+    +P V +FN L   L K    D    +   +  +G   +  TYN LIN     G
Sbjct: 79  NMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAG 138

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV-FGCELDVFTY 198
           R     +V+  +     TPD  T+ ++I   C    I  A     +++   GC  D FTY
Sbjct: 139 RSGEAVLVMQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTY 195

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNG-------------------------------- 226
           + LINGLC++ +   A  L +EM                                     
Sbjct: 196 SILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSML 255

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
           E G  C PD +TYSTIIDGLC+  G  +         F+ L KM        V    + +
Sbjct: 256 EHG--CAPDVVTYSTIIDGLCR-CGDVD-------KGFALLEKMVSRGCKPDV----VTY 301

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             L+ GLCK  K+  A  L + +   G  PN VTY+++  GLC   ++D          L
Sbjct: 302 TVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMAND------L 355

Query: 347 FKRLNSTGLFPDLYTYNILI 366
              +   G   D+  +  L+
Sbjct: 356 LTSIRDKGRVTDVVAFETLL 375



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  +     V +FN L     K +  D    L   +   G  PD  TY+ +I+  C+ G
Sbjct: 218 MIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCG 277

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V  GF +L +++     PD VT+T L+  LC   +++EA  L  ++   GC  +  TY+
Sbjct: 278 DVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYS 337

Query: 200 TLINGLCRTGHTIVALNLF 218
            + +GLC+     +A +L 
Sbjct: 338 LVFDGLCKIDKLDMANDLL 356



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY +L+R  C  G++          LL +     G+ P    YN  ++  CK G+V    
Sbjct: 20  TYFVLVRAHCLAGELQAAMD-----LLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAM 74

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +   +      PD VTF +LI
Sbjct: 75  EVVKNMKDGACKPDVVTFNTLI 96


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 150/321 (46%), Gaps = 30/321 (9%)

Query: 81  LNMRPSRPPVTS-FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           +  +P   P  S +N     L K+      + + K +      PD  T+N LI   CK G
Sbjct: 44  MEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAG 103

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           R+     VL  + RS F  + VT+ +LI  L +  R  EA  +   +       D  TYN
Sbjct: 104 RLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTP---DTQTYN 160

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            +I+G C++G    A    EEM    G     C PD  TYS +I+GLCK   S+N     
Sbjct: 161 AIIHGFCKSGEIDRAYGFLEEMKQRAG-----CSPDTFTYSILINGLCK---SSNL---- 208

Query: 260 CMASFSALNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
              +   L +M     + R  C    + F  L+DG CK   L  AREL  S+   G  P+
Sbjct: 209 -RKADELLQEM-----IGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPD 262

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           VVTY+ +I GLC  G +D+       F L +++ S G  PD+ TY +L+   CK G++  
Sbjct: 263 VVTYSTIIDGLCRCGDVDKG------FALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVE 316

Query: 378 GFVIFGRILPSCFTPDAVTFT 398
              +  R+L    TP+AVT++
Sbjct: 317 ACRLVKRMLEDGCTPNAVTYS 337



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 127/320 (39%), Gaps = 58/320 (18%)

Query: 82  NMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           NM+    +P V +FN L   L K    D    +   +  +G   +  TYN LIN     G
Sbjct: 79  NMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAG 138

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV-FGCELDVFTY 198
           R     +V+  +     TPD  T+ ++I   C    I  A     +++   GC  D FTY
Sbjct: 139 RSGEAVLVMQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTY 195

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNG-------------------------------- 226
           + LINGLC++ +   A  L +EM                                     
Sbjct: 196 SILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSML 255

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
           E G  C PD +TYSTIIDGLC+  G  +         F+ L KM        V    + +
Sbjct: 256 EHG--CAPDVVTYSTIIDGLCR-CGDVD-------KGFALLEKMVSRGCKPDV----VTY 301

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             L+ GLCK  K+  A  L + +   G  PN VTY+++  GLC   ++D          L
Sbjct: 302 TVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMAND------L 355

Query: 347 FKRLNSTGLFPDLYTYNILI 366
              +   G   D+  +  L+
Sbjct: 356 LTSIRDKGRITDVVAFEALL 375



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  +     V +FN L     K +  D    L   +   G  PD  TY+ +I+  C+ G
Sbjct: 218 MIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCG 277

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V  GF +L +++     PD VT+T L+  LC   +++EA  L  ++   GC  +  TY+
Sbjct: 278 DVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYS 337

Query: 200 TLINGLCRTGHTIVALNLF 218
            + +GLC+     +A +L 
Sbjct: 338 LVFDGLCKIDKLDMANDLL 356



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY +L+R  C  G++          LL +     G+ P    YN  ++  CK G+V    
Sbjct: 20  TYFVLVRAHCLAGELQAAMD-----LLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAM 74

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +   +      PD VTF +LI
Sbjct: 75  EVVKNMKDGACKPDVVTFNTLI 96


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/317 (32%), Positives = 147/317 (46%), Gaps = 30/317 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L   L K  +         +L   GL PD +TYN LI+ +CKMG + +   +
Sbjct: 284 PDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKI 343

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L   +   F PD  T+ SLI  LC    I  A ALF      G +  V  YN LI GLC+
Sbjct: 344 LQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQ 403

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  + AL +  EM+  NG     C  D  TY+ +I+GLCK           C++  + L
Sbjct: 404 EGLILQALQMMNEMSE-NG-----CSSDIWTYNLVINGLCK---------MGCVSDANNL 448

Query: 268 NKMAF---YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
              A    Y P V        F  LIDG CK  K++   ++   +   G+ P+V+TYN +
Sbjct: 449 MNDAIAKGYVPDV------FTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSV 502

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + GL       +    E +   F+ +   G  P+  TYNIL    CK G+V+    +   
Sbjct: 503 LNGL------SKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDE 556

Query: 385 ILPSCFTPDAVTFTSLI 401
           IL    TPD V+F ++I
Sbjct: 557 ILNKGITPDTVSFATII 573



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 154/333 (46%), Gaps = 31/333 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F+ ML +    P V++FN L   L K         L  ++   G+  + +T+NI 
Sbjct: 199 EAYELFNDMLRI-GIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIF 257

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I   C+ G +S    +L  ++R   TPD VT+ +LI  LC  S ++EA     KL   G 
Sbjct: 258 IQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGL 317

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE---PDAITYSTIIDGLCK 248
           E D FTYNTLI+G C+ G    A  + +         G +C+   PD  TY ++I+GLC+
Sbjct: 318 EPDGFTYNTLIDGYCKMGMLQNAEKILQ---------GAICKGFVPDEFTYCSLINGLCQ 368

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                  L     A    L      + +            LI GLC+   +  A ++   
Sbjct: 369 NDEIDRALALFNAALGKGLKPTVILYNM------------LIKGLCQEGLILQALQMMNE 416

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G   ++ TYN++I GLC  G + +  +      L     + G  PD++T+N LI+ 
Sbjct: 417 MSENGCSSDIWTYNLVINGLCKMGCVSDANN------LMNDAIAKGYVPDVFTFNTLIDG 470

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +CK  ++ +   I  ++     TPD +T+ S++
Sbjct: 471 YCKQLKMETTIQILNKMWSHGVTPDVITYNSVL 503



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 148/354 (41%), Gaps = 39/354 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + AL +F+  L  +  +P V  +N+L   L +       L +   ++  G   D +TYN+
Sbjct: 373 DRALALFNAALG-KGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNL 431

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CKMG VS    ++   +   + PD  TF +LI   C + ++     +  K+   G
Sbjct: 432 VINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHG 491

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV TYN+++NGL +       +  FE M     E G  C P+ ITY+ + + LCK A
Sbjct: 492 VTPDVITYNSVLNGLSKAVKNEDLMETFETMV----EKG--CVPNKITYNILTESLCK-A 544

Query: 251 GSAN-----------------FLGFSCMASFSALN---KMAFYF-----PLVRVQCLCLN 285
           G  N                  + F+ + S  A N   K A+          +V      
Sbjct: 545 GKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTAT 604

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  +I+   +   L +  +LF  +   G  P+  TY ++I G C  G  D        FL
Sbjct: 605 YNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYK----FL 660

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
           L   +   G  P L T+  +INC C   RV     I   ++ +   P+ V   S
Sbjct: 661 L--EMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPEVVNSIS 712



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 122/297 (41%), Gaps = 70/297 (23%)

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
           +   +K    + ++ EA  +F ++  + CE  V +YN ++N L  +G+   A  +F  M 
Sbjct: 79  YIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMK 138

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMA-------FY 273
           N     G+V  PD  T++  I   C  K   SA  L  + ++    LN +A       FY
Sbjct: 139 N----VGIV--PDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFY 192

Query: 274 FPLVRVQC----------------------------------------------LCLN-- 285
               RV+                                               +C N  
Sbjct: 193 EENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLF 252

Query: 286 -FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            F   I GLC+   L  A  +  S+ R GL P+VVTYN LI GLC +  + E + Y    
Sbjct: 253 TFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKY---- 308

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               +L + GL PD +TYN LI+ +CK+G + +   I    +   F PD  T+ SLI
Sbjct: 309 --LHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLI 363


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 157/311 (50%), Gaps = 26/311 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           FN L   L K K Y+ V+SL+  L     + P   T++ILIN F ++G++   F +LG I
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNI 131

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           L+  F  D    T+L+K LC + R++EA +L  +    G   D   Y T+INGLC+ G T
Sbjct: 132 LKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKT 191

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A+ +F +M        +   P+ I Y+T+IDGLCK+       G  C        ++ 
Sbjct: 192 RDAIQMFPKMKK------IRVYPNLIMYNTVIDGLCKQGLVDEACGL-CTEMVENGIELD 244

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL-PRAGLMPNVVTYNILIRGLCN 330
            Y           ++  +I G C + + + A +L   +  R  + P+V T+NILI GLC 
Sbjct: 245 VY-----------SYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCK 293

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G++ E   Y  V ++ KR    G  PD+ +YN L+N +C  G V     +F +++    
Sbjct: 294 LGRVSEA--YNVVAVMIKR----GWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTA 347

Query: 391 TPDAVTFTSLI 401
            P+ +++ +LI
Sbjct: 348 LPNVISYCTLI 358



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 156/314 (49%), Gaps = 25/314 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYTYNILINCFCKMGRVSHGFVVL 148
           V S+N +         +   + L   + + G ++PD YT+NILI+  CK+GRVS  + V+
Sbjct: 245 VYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVV 304

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
             +++  + PD V++ +L+   C    + EA  +F K+       +V +Y TLING C+ 
Sbjct: 305 AVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKV 364

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                A+ L  EM N N        PD +TY+ ++DGL K   S     +  + +  A  
Sbjct: 365 RMVDEAMVLLTEMHNKN------LVPDTVTYNCLLDGLSKSGRS--LYEWDLVEAMRASG 416

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
           + A            + +  L+D   K  K   A  LFQ +   G+ PN+ TYNIL+ GL
Sbjct: 417 QPAD----------LITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGL 466

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C  G++   K       +F+ L++ G  P++ TYNI+I+  CK G +     +  +++ +
Sbjct: 467 CKSGRLKYAKE------IFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNN 520

Query: 389 CFTPDAVTFTSLIK 402
            + P+ +TF ++++
Sbjct: 521 NYLPNYITFDTIVR 534



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 147/299 (49%), Gaps = 34/299 (11%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAK----TKHYDTVLSLFKRLNLTGLFPDRYTY 128
           A+ + D M+      P V +FNIL   L K    ++ Y+ V  + KR    G  PD  +Y
Sbjct: 264 AVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKR----GWKPDIVSY 319

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N L+N +C  G V     V  +++     P+ +++ +LI   C    + EA  L T++  
Sbjct: 320 NALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHN 379

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLC 247
                D  TYN L++GL ++G ++   +L E M A+G          D ITY+ ++D   
Sbjct: 380 KNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQ-------PADLITYNVLLDDYF 432

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K            +A F  + ++    P +R       +  L+DGLCK  +LK A+E+FQ
Sbjct: 433 KHEKFD-----KALALFQHIIEIGIS-PNIR------TYNILLDGLCKSGRLKYAKEIFQ 480

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            L   G  PN+ TYNI+I GLC +G +DE +      LL+K +N+  L P+  T++ ++
Sbjct: 481 LLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEA-----LLYKMVNNNYL-PNYITFDTIV 533



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 58/103 (56%), Gaps = 1/103 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F +++ +  S P + ++NIL   L K+        +F+ L+  G  P+  TYNI
Sbjct: 438 DKALALFQHIIEIGIS-PNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNI 496

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           +I+  CK G +     +L +++ + + P+ +TF ++++ +  +
Sbjct: 497 MIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIVRAILVK 539



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 338 KHYETVFLLFKRLNST-GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
           K Y  V  L+  L S   + P L T++ILIN F ++G++   F + G IL   F  D   
Sbjct: 83  KRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRI 142

Query: 397 FTSLIK 402
            T+L+K
Sbjct: 143 LTTLMK 148


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 159/336 (47%), Gaps = 26/336 (7%)

Query: 68  ITPNEALCVFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
           +   E + V+ ++  M   +  P V +FNIL   L     ++    L +++  +G  P  
Sbjct: 209 VKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTI 268

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            TYN +++ +CK GR      +L  +       D  T+  LI DLC  +RI +   L   
Sbjct: 269 VTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRD 328

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +R      +  TYNTLING    G  ++A  L  EM +    FG+   P+ +T++ +IDG
Sbjct: 329 MRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLS----FGL--SPNHVTFNALIDG 382

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
              E             +F    KM +      +    +++  L+DGLCK ++  +AR  
Sbjct: 383 HISE------------GNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGF 430

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           +  + R G+    +TY  +I GLC +G +DE        +L   ++  G+ PD+ TY+ L
Sbjct: 431 YMRMKRNGVCVGRITYTGMIDGLCKNGFLDEA------VVLLNEMSKDGIDPDIVTYSAL 484

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           IN FCK+GR  +   I  RI     +P+ + +++LI
Sbjct: 485 INGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 520



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 147/342 (42%), Gaps = 29/342 (8%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G I+     EAL +F YM+  +   P   S+ +L   L K   +D     + R+   G+
Sbjct: 381 DGHISEGNFKEALKMF-YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGV 439

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
              R TY  +I+  CK G +    V+L  + +    PD VT+++LI   C   R   A  
Sbjct: 440 CVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKE 499

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYS 240
           +  ++   G   +   Y+TLI   CR G    A+ ++E M   G+         D  T++
Sbjct: 500 IVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTR-------DHFTFN 552

Query: 241 TIIDGLCKEAGSANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
            ++  LCK    A    F  CM S   L                ++F CLI+G     + 
Sbjct: 553 VLVTSLCKAGKVAEAEEFMRCMTSDGILPN-------------TVSFDCLINGYGNSGEG 599

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A  +F  + + G  P   TY  L++GLC  G + E + +       K L++     D 
Sbjct: 600 LKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKF------LKSLHAVPAAVDT 653

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             YN L+   CK G ++    +FG ++     PD+ T+TSLI
Sbjct: 654 VMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLI 695



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 182/450 (40%), Gaps = 74/450 (16%)

Query: 30  PSYPTTTATLRLTVK--DRASLEQFLKERCKSSGEGDITS--ITPNEALCV---FD---- 78
           PS  T  A L   VK  +  S+  FLKE  K     D+ +  I  N  LC    F+    
Sbjct: 196 PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILIN-VLCAEGSFEKSSY 254

Query: 79  YMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
            M  M  S   P + ++N +     K   +   + L   +   G+  D  TYN+LI+  C
Sbjct: 255 LMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLC 314

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           +  R++ G+++L  + +    P+ VT+ +LI     E +++ A+ L  ++  FG   +  
Sbjct: 315 RSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHV 374

Query: 197 TYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           T+N LI+G    G+   AL +F  M A G         P  ++Y  ++DGLCK A     
Sbjct: 375 TFNALIDGHISEGNFKEALKMFYMMEAKG-------LTPSEVSYGVLLDGLCKNAEFDLA 427

Query: 256 LGF--------SCMASFS------ALNKMAFYFPLV---------RVQCLCLNFLCLIDG 292
            GF         C+   +       L K  F    V          +    + +  LI+G
Sbjct: 428 RGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALING 487

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET-KHYETVFL------ 345
            CK+ + K A+E+   + R GL PN + Y+ LI   C  G + E  + YE + L      
Sbjct: 488 FCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRD 547

Query: 346 ----------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
                                   + + S G+ P+  +++ LIN +   G     F +F 
Sbjct: 548 HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFD 607

Query: 384 RILPSCFTPDAVTFTSLIKILEINSFFRQV 413
            +      P   T+ SL+K L      R+ 
Sbjct: 608 EMTKVGHHPTFFTYGSLLKGLCKGGHLREA 637



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 147/358 (41%), Gaps = 39/358 (10%)

Query: 59  SSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL 118
           +SGEG        +A  VFD M  +    P   ++  L   L K  H        K L+ 
Sbjct: 595 NSGEG-------LKAFSVFDEMTKV-GHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHA 646

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
                D   YN L+   CK G ++    + G +++    PD+ T+TSLI  LC + + + 
Sbjct: 647 VPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVI 706

Query: 179 AAALFTKLRVFGCEL-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           A     +    G  L +   Y   ++G+ + G     +   E+M N      +   PD +
Sbjct: 707 AILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDN------LGHTPDIV 760

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLC 294
           T + +ID            G+S M      N +    P +  Q    N   +  L+ G  
Sbjct: 761 TTNAMID------------GYSRMGKIEKTNDL---LPEMGNQNGGPNLTTYNILLHGYS 805

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K   +  +  L++S+   G++P+ +T + L+ G+C      E+   E    + K     G
Sbjct: 806 KRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGIC------ESNMLEIGLKILKAFICRG 859

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           +  D YT+N+LI+  C  G ++  F +   +     + D  T  +++ +L  N  F++
Sbjct: 860 VEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQE 917



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 132/320 (41%), Gaps = 30/320 (9%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P +T++NIL    +K K   T   L++ + L G+ PD+ T + L+   C+   +  G  +
Sbjct: 792  PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKI 851

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            L   +      D  TF  LI   CA   I  A  L   +   G  LD  T + +++ L R
Sbjct: 852  LKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNR 911

Query: 208  TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                  +  +  EM+           P++  Y  +I+GLC+              +F   
Sbjct: 912  NHRFQESRMVLHEMSKQG------ISPESRKYIGLINGLCRVG--------DIKTAFVVK 957

Query: 268  NKMAFYF---PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             +M  +    P V           ++  L K  K   A  L + + +  L+P + ++  L
Sbjct: 958  EEMIAHKICPPNVAES-------AMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTL 1010

Query: 325  IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
            +   C +G + E      V      +++ GL  DL +YN+LI   C  G ++  F ++  
Sbjct: 1011 MHLCCKNGNVIEALELRVV------MSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEE 1064

Query: 385  ILPSCFTPDAVTFTSLIKIL 404
            +    F  +A T+ +LI+ L
Sbjct: 1065 MKGDGFLANATTYKALIRGL 1084



 Score = 42.4 bits (98), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 1/116 (0%)

Query: 70   PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
             +EA  +  +ML M+   P + SF  L     K  +    L L   ++  GL  D  +YN
Sbjct: 985  ADEATLLLRFMLKMKLV-PTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYN 1043

Query: 130  ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            +LI   C  G ++  F +   +    F  +A T+ +LI+ L A       A +  K
Sbjct: 1044 VLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIILK 1099


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 160/330 (48%), Gaps = 31/330 (9%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VF  ML  + S P V ++NIL        + D  L  F R+   G  P+  TYN LI+ +
Sbjct: 192 VFKEMLQSQVS-PNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGY 250

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK+ ++  GF +L  +      P+ +++  +I  LC E R+ E + + T++   G  LD 
Sbjct: 251 CKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDE 310

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            TYNTLI G C+ G+   AL +  EM            P  ITY+++I  +CK AG+   
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHG------LSPSVITYTSLIHSMCK-AGN--- 360

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRA 312
                      +N+   +   +RV+ LC N   +  L+DG  +   +  A  + + +   
Sbjct: 361 -----------MNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDN 409

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  P+VVTYN LI G C  G+M +         + + +   GL PD+ +Y+ +++ FC+ 
Sbjct: 410 GFSPSVVTYNALINGHCIAGKMVD------AIAVLEDMKEKGLTPDVVSYSTVLSGFCRS 463

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             V     +  +++     PD +T++SLI+
Sbjct: 464 YDVDEALRVKRKMVAKGIKPDTITYSSLIQ 493



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 156/340 (45%), Gaps = 24/340 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFG--CLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           NEA  V   M++   S P V ++N L    C+A  K  D + ++ + +   GL PD  +Y
Sbjct: 397 NEAYRVLKEMIDNGFS-PSVVTYNALINGHCIA-GKMVDAI-AVLEDMKEKGLTPDVVSY 453

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           + +++ FC+   V     V  +++     PD +T++SLI+  C + R  EA  LF ++  
Sbjct: 454 STVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLR 513

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   D FTY  LIN  C  G    A+ L  EM     E GV+  PD +TYS +I+GL K
Sbjct: 514 VGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMV----EKGVL--PDVVTYSVLINGLNK 567

Query: 249 EAGS--ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF---LCLIDGLCKISKLKIAR 303
           +A +  A  L        S  + +  Y  L+   C  + F   + LI G C    +  A 
Sbjct: 568 QARTREAKRLLLKLFYEESVPSDVT-YHTLIE-NCSNIEFKSVVSLIKGFCMKGMMTEAD 625

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           ++F+S+      P+   YN++I G C  G +         + L+K +  +G      T  
Sbjct: 626 QVFESMLEKNHKPDGTAYNVMIHGHCRGGDI------RKAYSLYKEMVKSGFLLHTVTVI 679

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
            L+    K G+V+    +   +L SC   +A     L++I
Sbjct: 680 ALVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEI 719



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 144/348 (41%), Gaps = 46/348 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  L    ++  + +    + K +   G  P   TYN LIN  C  G++     V
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAV 437

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +     TPD V++++++   C    + EA  +  K+   G + D  TY++LI G C 
Sbjct: 438 LEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCE 497

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
              T  A +LF+EM        V   PD  TY+ +I+  C E             +    
Sbjct: 498 QRRTKEACDLFDEM------LRVGLPPDEFTYTALINAYCMEG--------DLQKAIQLH 543

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI---- 323
           N+M     L  V    + +  LI+GL K ++ + A+ L   L     +P+ VTY+     
Sbjct: 544 NEMVEKGVLPDV----VTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIEN 599

Query: 324 -----------LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
                      LI+G C  G M E         +F+ +      PD   YN++I+  C+ 
Sbjct: 600 CSNIEFKSVVSLIKGFCMKGMMTEADQ------VFESMLEKNHKPDGTAYNVMIHGHCRG 653

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL-------EINSFFRQV 413
           G +   + ++  ++ S F    VT  +L+K L       E+NS    V
Sbjct: 654 GDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANV 701


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 163/335 (48%), Gaps = 28/335 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYTY 128
           +A  VFD +L  R     +   N     +A+      V S + R+   G   + P+  TY
Sbjct: 37  DARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTY 94

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKLR 187
            ILI   C  GR+  GF  LG +++  F  DA+ FT L+K LCA+ R  +A  +   ++ 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             GC  +VF+YN L+ GLC    +  AL L + M +  G+    C PD ++Y+T+I+G  
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGFF 210

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           KE             ++   ++M     L  V    + +  +I  LCK   +  A E+  
Sbjct: 211 KEG--------DLDKAYGTYHEMLDRGILPNV----VTYSSIIAALCKAQAMDKAMEVLT 258

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           S+ + G+MPN  TYN ++ G C+ GQ  E   +       K+++S G+ PD+ TYN L++
Sbjct: 259 SMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF------LKKMHSDGVEPDVVTYNSLMD 312

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             CK GR +    +F  +      P+  T+ +L++
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 145/312 (46%), Gaps = 24/312 (7%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           F+IL    AK    D  + +F ++   GL PD  TY  +I   CK GRV        +++
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMI 436

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
               +P  + + SLI  LC   +  +A  L  ++   G  LD   +N++I+  C+ G  I
Sbjct: 437 DERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            +  LF+ M       GV  +PD ITYST+IDG C                     K+  
Sbjct: 497 ESEKLFDLMV----RIGV--KPDIITYSTLIDGYC------------LAGKMDEATKLLA 538

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
               V ++  C+ +  LI+G CKIS+++ A  LF+ +  +G+ P+++TYNI+++GL    
Sbjct: 539 SMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLF--- 595

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
              +T+       L+  +  +G   +L TYNI+++  CK         +F  +  +    
Sbjct: 596 ---QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652

Query: 393 DAVTFTSLIKIL 404
           +  TF  +I  L
Sbjct: 653 ETRTFNIMIGAL 664



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 135/304 (44%), Gaps = 29/304 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+  F+ M++ R S P    +N L   L     +D    L   +   G+  D   +N +
Sbjct: 427 DAMRYFEQMIDERLS-PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK GRV     +   ++R    PD +T+++LI   C   ++ EA  L   +   G 
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CKE 249
           + D  TYNTLING C+      AL LF EM +     GV   PD ITY+ I+ GL   + 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESS----GV--SPDIITYNIILQGLFQTRR 599

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
             +A  L      S + L    +                ++ GLCK +    A  +FQ+L
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNI--------------ILHGLCKNNLTDEALRMFQNL 645

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
               L     T+NI+I  L   G+ DE K       LF  L++ GL PD+ TY+++    
Sbjct: 646 CLTDLQLETRTFNIMIGALLKVGRNDEAKD------LFAALSANGLVPDVRTYSLMAENL 699

Query: 370 CKIG 373
            + G
Sbjct: 700 IEQG 703



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 152/384 (39%), Gaps = 59/384 (15%)

Query: 71  NEALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
            EAL +   M +     PP V S+  +     K    D     +  +   G+ P+  TY+
Sbjct: 179 QEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYS 238

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +I   CK   +     VL  ++++   P+  T+ S++   C+  +  EA     K+   
Sbjct: 239 SIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD 298

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G E DV TYN+L++ LC+ G    A  +F+ M           +P+  TY T++ G   +
Sbjct: 299 GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG------LKPEITTYGTLLQGYATK 352

Query: 250 AGSANFLG----------------FSCM----ASFSALNKMAFYFPLVRVQCL---CLNF 286
                  G                FS +    A    +++    F  +R Q L    + +
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTY 412

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH------- 339
             +I  LCK  +++ A   F+ +    L P  + YN LI  LC   + D+ K        
Sbjct: 413 GTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLD 472

Query: 340 ----YETVFL------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
                +T+F                   LF  +   G+ PD+ TY+ LI+ +C  G++  
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 532

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
              +   ++     PD VT+ +LI
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLI 556


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 151/321 (47%), Gaps = 33/321 (10%)

Query: 88  PPVTSFNIL------FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           P V ++N L       G + K    D +L   K +   G+ P+  TYNILI+ FCK   V
Sbjct: 188 PNVITYNTLIDGYCKMGRIGKMYKADAIL---KEMVAKGICPNEVTYNILIDGFCKDENV 244

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
           S    V G + R    P+ VT+  LI  LC++ ++ EA AL  ++     E +V T+N L
Sbjct: 245 SGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVL 304

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           ING C+      A+NLF +M     + GV  +P+A+TY+T+ID  CK+    +      M
Sbjct: 305 INGFCKNKTVNEAINLFNDME----KQGV--DPNAMTYTTLIDAYCKDGRMEDAFALYNM 358

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
                +      FP V        + CLI GLC+   +K AR L   +    L  +VVTY
Sbjct: 359 MIDRGI------FPEVST------YNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTY 406

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           NILI  LC  G+            L   +   GL P   TYN L++ +C+ G + +  ++
Sbjct: 407 NILIDSLCKKGE------SRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIV 460

Query: 382 FGRILPSCFTPDAVTFTSLIK 402
             R+       + VT   LIK
Sbjct: 461 RTRMERKGKQANVVTHNVLIK 481



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 138/276 (50%), Gaps = 27/276 (9%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           ++L+  F +  ++  GF    R     F    ++   L+  L  ES   +   ++ ++  
Sbjct: 89  DMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIK 148

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
              EL+V ++N ++NGLC+ G    A ++ E+M      +GV   P+ ITY+T+IDG CK
Sbjct: 149 RKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMK----VWGV--SPNVITYNTLIDGYCK 202

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIAREL 305
                       M     + K       +  + +C N   +  LIDG CK   +  A  +
Sbjct: 203 ------------MGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRV 250

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  + R GL PNVVTYNILI GLC+DG++DE         L  ++ S+ L P++ T+N+L
Sbjct: 251 FGEMQRQGLRPNVVTYNILINGLCSDGKVDEA------VALRDQMVSSDLEPNVVTHNVL 304

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           IN FCK   V+    +F  +      P+A+T+T+LI
Sbjct: 305 INGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLI 340



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 25/293 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ VF  M   +  RP V ++NIL   L      D  ++L  ++  + L P+  T+N+LI
Sbjct: 247 AMRVFGEM-QRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLI 305

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N FCK   V+    +   + +    P+A+T+T+LI   C + R+ +A AL+  +   G  
Sbjct: 306 NGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIF 365

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            +V TYN LI GLCR G    A +L  EM +           D +TY+ +ID LCK+  S
Sbjct: 366 PEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKK------LSADVVTYNILIDSLCKKGES 419

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
              +          LN     +              L+DG C+   L+ A  +   + R 
Sbjct: 420 RKAVKLLDEMFEKGLNPSHVTYN------------TLMDGYCREGNLRAALIVRTRMERK 467

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           G   NVVT+N+LI+G C  G++++         L   +   GL P+  TY I+
Sbjct: 468 GKQANVVTHNVLIKGFCLKGRLEDANG------LLNEMLERGLVPNRTTYEII 514



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 130/281 (46%), Gaps = 27/281 (9%)

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI---MEAAALF 183
           ++NI++N  CK+G+++    V+  +     +P+ +T+ +LI   C   RI    +A A+ 
Sbjct: 157 SFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAIL 216

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            ++   G   +  TYN LI+G C+  +   A+ +F EM            P+ +TY+ +I
Sbjct: 217 KEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQG------LRPNVVTYNILI 270

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           +GLC +      +        S L       P V    +      LI+G CK   +  A 
Sbjct: 271 NGLCSDGKVDEAVALRDQMVSSDLE------PNVVTHNV------LINGFCKNKTVNEAI 318

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            LF  + + G+ PN +TY  LI   C DG+M      E  F L+  +   G+FP++ TYN
Sbjct: 319 NLFNDMEKQGVDPNAMTYTTLIDAYCKDGRM------EDAFALYNMMIDRGIFPEVSTYN 372

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            LI   C+ G V +   +   ++    + D VT+  LI  L
Sbjct: 373 CLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSL 413



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 6/148 (4%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +GD+ +     A  + + M++ + S   VT +NIL   L K       + L   +   GL
Sbjct: 381 KGDVKA-----ARSLMNEMVSKKLSADVVT-YNILIDSLCKKGESRKAVKLLDEMFEKGL 434

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P   TYN L++ +C+ G +    +V  R+ R     + VT   LIK  C + R+ +A  
Sbjct: 435 NPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANG 494

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTG 209
           L  ++   G   +  TY  +   +   G
Sbjct: 495 LLNEMLERGLVPNRTTYEIIKEEMMEKG 522


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 145/311 (46%), Gaps = 18/311 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     ++    + K +   G  PD  TY  +I   C+  +V   F++   + R+   P
Sbjct: 426 CLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNP 485

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T LI   C    I +A + F ++R  GC  +V TY  L++   ++   I A ++F
Sbjct: 486 DVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIF 545

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL--GFSCMASFSALNKMAFYFPL 276
             M +        C P+A+TYS +IDGLCK AG        +  +   S   +  FYF  
Sbjct: 546 HRMVDA------ACYPNAVTYSALIDGLCK-AGEIQKACEVYEKLIGTSGNVESDFYFEG 598

Query: 277 VRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
                +  N +    LIDGLCK  K+  A EL  ++  AG  PN + Y+ LI G C  G+
Sbjct: 599 NDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGK 658

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           +D  +       +F R+   G  P ++TY  LI+   K GR+     +   +L     P+
Sbjct: 659 IDNAQE------VFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPN 712

Query: 394 AVTFTSLIKIL 404
            VT+T++I  L
Sbjct: 713 VVTYTAMIDGL 723



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 160/329 (48%), Gaps = 32/329 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  +++  +   L + K  +    LF+ +   G+ PD YTY ILI+ FCK G +      
Sbjct: 450 PDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSW 509

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +     +P+ VT+T+L+       ++++A  +F ++    C  +  TY+ LI+GLC+
Sbjct: 510 FDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCK 569

Query: 208 TGHTIVALNLFEEM--ANGNGEFGVVCE--------PDAITYSTIIDGLCK--EAGSANF 255
            G    A  ++E++   +GN E     E        P+ +TY  +IDGLCK  +   A+ 
Sbjct: 570 AGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHE 629

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L  + +A+    N++ +                LIDG CKI K+  A+E+F  + + G +
Sbjct: 630 LLDAMLAAGCEPNQIVYD--------------ALIDGFCKIGKIDNAQEVFLRMTKCGYL 675

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+V TY  LI  +  DG++D       + +L + LN +   P++ TY  +I+   K+G +
Sbjct: 676 PSVHTYTSLIDRMFKDGRLD-----LAMKVLSEMLNDS-CNPNVVTYTAMIDGLSKVGEI 729

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                +   +     +P+ VT+T+LI  L
Sbjct: 730 EKALNLLSLMEEKGCSPNVVTYTALIDGL 758



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 138/337 (40%), Gaps = 51/337 (15%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++ IL     K    +   S F  +   G  P+  TY  L++ + K  ++     +
Sbjct: 485 PDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDI 544

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD------------- 194
             R++ +   P+AVT+++LI  LC    I +A  ++ KL      ++             
Sbjct: 545 FHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTI 604

Query: 195 ---VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              V TY  LI+GLC+      A  L + M          CEP+ I Y  +IDG CK   
Sbjct: 605 APNVVTYGALIDGLCKAQKVSDAHELLDAM------LAAGCEPNQIVYDALIDGFCKIGK 658

Query: 252 SANFLG-FSCMASFSALNKMAFYFPLV-------------RVQCLCLNFLC--------- 288
             N    F  M     L  +  Y  L+             +V    LN  C         
Sbjct: 659 IDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTA 718

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +IDGL K+ +++ A  L   +   G  PNVVTY  LI GL   G+ D +        LFK
Sbjct: 719 MIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADAS------LKLFK 772

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           ++NS G  P+  TY +LIN  C  G +    ++   +
Sbjct: 773 QMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEM 809



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 144/347 (41%), Gaps = 50/347 (14%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   ++N L   LA     +    + K ++ +G   DR T        CK+GR +    
Sbjct: 201 RPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVGRWADA-- 258

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L  + +  F  D V  T +I  L   S   EA +   ++R   C  +V TY TL++G  
Sbjct: 259 -LNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFL 317

Query: 207 RT---GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN--------- 254
           +    G     +N+   M  G       C P+   +++++ G C     A          
Sbjct: 318 KKKQFGWCKRIINMM--MTEG-------CNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMT 368

Query: 255 -------------FLGFSC----MASFSALNKMA-FYFPLVRVQCLC--LNFLCLIDGLC 294
                        F+G  C    + +   L+ +   Y  ++   C+   +N       LC
Sbjct: 369 TCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLC 428

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
            + K + A ++ + + R G +P+  TY  +I  LC      + K  E  FLLF+ +   G
Sbjct: 429 GVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLC------QAKKVEKSFLLFQEMKRAG 482

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + PD+YTY ILI+ FCK G +      F  +     +P+ VT+T+L+
Sbjct: 483 VNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALL 529



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 142/355 (40%), Gaps = 53/355 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   L K +       L   +   G  P++  Y+ LI+ FCK+G++ +   V
Sbjct: 606 PNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEV 665

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R+ +  + P   T+TSLI  +  + R+  A  + +++    C  +V TY  +I+GL +
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSK 725

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA-GSANFLGFSCMASFSA 266
            G    ALNL   M          C P+ +TY+ +IDGL K     A+   F  M S   
Sbjct: 726 VGEIEKALNLLSLMEEKG------CSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGC 779

Query: 267 LNKMAFYFPLVRVQC---------LCLN-------------FLCLIDGLCKISKLKIARE 304
                 Y  L+   C         L L+             + C + G  K  K   +  
Sbjct: 780 APNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSK--KFIASLG 837

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL---------NSTGL 355
           L + +     +P    Y +LI      G++      ET   L K L          STG+
Sbjct: 838 LLEEMESHETVPIAPVYGMLIDSFSKAGRL------ETALELHKELVEVSSSLNMTSTGM 891

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-ILEINSF 409
                 Y  LI   C   +V   F ++  +      PD + F SL+K ++E+N +
Sbjct: 892 ------YASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKW 940



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 125/310 (40%), Gaps = 65/310 (20%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P    ++ L     K    D    +F R+   G  P  +TY  LI+   K GR+     
Sbjct: 640 EPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMK 699

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL  +L     P+ VT+T++I  L     I +A  L + +   GC  +V TY  LI+GL 
Sbjct: 700 VLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLG 759

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID-----GLCKEA----------- 250
           +TG    +L LF++M N  G     C P+ +TY  +I+     GL  EA           
Sbjct: 760 KTGKADASLKLFKQM-NSKG-----CAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTH 813

Query: 251 GSANFLGFSC---------MASFSALNKMAFY--FPLVRVQCLCLN-------------- 285
              +  G+ C         +AS   L +M  +   P+  V  + ++              
Sbjct: 814 WPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALEL 873

Query: 286 ------------------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                             +  LI  LC  S+++ A  L+  + R G++P+++ +  L++G
Sbjct: 874 HKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKG 933

Query: 328 LCNDGQMDET 337
           L    + DE 
Sbjct: 934 LIEVNKWDEA 943



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 150/369 (40%), Gaps = 48/369 (13%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           DR+++  F +  CK     D  ++   E     D+ L+       V    ++ G L +  
Sbjct: 238 DRSTIGYFAQALCKVGRWADALNMLEKE-----DFNLDT------VLCTQMISG-LMEAS 285

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
            ++  +S   R+      P+  TY  L++ F K  +      ++  ++     P+   F 
Sbjct: 286 LFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFN 345

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           SL+   C       A  LF ++   G       YN  I  +C            EE+   
Sbjct: 346 SLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQ----------EELP-- 393

Query: 225 NGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSC-----MASFSALNKM--AFYFP 275
           N E   + E     Y  ++   C   +  +ANF    C       +F  L +M    + P
Sbjct: 394 NAELLDLVEK---VYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVP 450

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                   + F      LC+  K++ +  LFQ + RAG+ P+V TY ILI   C  G ++
Sbjct: 451 DTSTYTKVITF------LCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIE 504

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           + + +      F  + S G  P++ TY  L++ + K  ++     IF R++ +   P+AV
Sbjct: 505 QARSW------FDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAV 558

Query: 396 TFTSLIKIL 404
           T+++LI  L
Sbjct: 559 TYSALIDGL 567



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 105/299 (35%), Gaps = 21/299 (7%)

Query: 106 YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           +D  L    RL   G  P   TYN L+      G+V  GF V   +  S F  D  T   
Sbjct: 185 WDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGY 244

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
             + LC   R  +A  +  K       LD      +I+GL        A++    M   +
Sbjct: 245 FAQALCKVGRWADALNMLEKEDF---NLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNS 301

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN 285
                 C P+ +TY T++ G  K+           M      N     F           
Sbjct: 302 ------CIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFN---------- 345

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
              L+ G C       A +LF  +   G  P  V YNI I  +C   ++   +  + V  
Sbjct: 346 --SLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEK 403

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +++ + +     +         C C +G+    F I   ++   F PD  T+T +I  L
Sbjct: 404 VYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFL 462



 Score = 42.0 bits (97), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
           +K +   L L + +      P    Y +LI+ F K GR+     +   ++    + +  +
Sbjct: 829 SKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTS 888

Query: 163 ---FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
              + SLI+ LC  S++ EA  L+T++   G   D+  + +L+ GL        AL L
Sbjct: 889 TGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQL 946


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 151/329 (45%), Gaps = 25/329 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD M + R  R  V SFN +   + +    D   +L +R++  G+ PD YTY  LI
Sbjct: 135 AQNVFDEMQS-RGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALI 193

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              C++GR+     V  ++      P+AV FT LI   C +        L  ++R  G  
Sbjct: 194 QGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVR 253

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D  TYN ++NGLCR      A  +  EM +          PD +TY+T+IDG CKE   
Sbjct: 254 PDAVTYNAIVNGLCRARDLKSASGIVVEMRSAG------LRPDTVTYTTLIDGYCKEEEL 307

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                   MA     N +A    L  V      +  LI GL K  +   A  +   +  A
Sbjct: 308 D-------MAMEIKQNMVAEGVGLDEV-----TYTALISGLSKAGRSADAERVLGEMMEA 355

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           GL P+  TY ++I   C  G +      +T   L K + + G  P + TYN+++N FCK+
Sbjct: 356 GLEPDNTTYTMVIDAFCRKGDV------KTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKL 409

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G++ +  ++   ++    +PD +T+  L+
Sbjct: 410 GQMKNADMLLNAMINIGVSPDDITYNILL 438



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 134/301 (44%), Gaps = 28/301 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  VF+ M   R  +P    F IL     K    +T+L L + +   G+ PD  TYN 
Sbjct: 203 EDARGVFEKMCG-RGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNA 261

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++N  C+   +     ++  +  +   PD VT+T+LI   C E  +  A  +   +   G
Sbjct: 262 IVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEG 321

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             LD  TY  LI+GL + G +  A  +  EM     E G+  EPD  TY+ +ID  C++ 
Sbjct: 322 VGLDEVTYTALISGLSKAGRSADAERVLGEMM----EAGL--EPDNTTYTMVIDAFCRKG 375

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                 G   +       +     P V      + +  +++G CK+ ++K A  L  ++ 
Sbjct: 376 DVKT--GLRLLKEMQNKGRK----PGV------VTYNVIMNGFCKLGQMKNADMLLNAMI 423

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+ +TYNIL+ G C  G++ + +  ++         + G  PDL  Y  ++    
Sbjct: 424 NIGVSPDDITYNILLDGHCKHGKVTDIEELKS---------AKGTVPDLGVYTSIVGEIV 474

Query: 371 K 371
           K
Sbjct: 475 K 475



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 24/224 (10%)

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           EA A + +L   G   +   +N L+  L R G    A N+F+EM +      VV      
Sbjct: 99  EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVV------ 152

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           +++T+I G+C+ AG           +       A   P V        +  LI GLC++ 
Sbjct: 153 SFNTMISGMCR-AGD-----LDGAETLHRRMSEAGVTPDV------YTYGALIQGLCRVG 200

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           +++ AR +F+ +   G+ PN V + ILI   C  G        ET+  L + +   G+ P
Sbjct: 201 RIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDA------ETMLELHREMRERGVRP 254

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           D  TYN ++N  C+   + S   I   +  +   PD VT+T+LI
Sbjct: 255 DAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLI 298



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 9/164 (5%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++  L   L+K         +   +   GL PD  TY ++I+ FC+ G V  G  +L  +
Sbjct: 328 TYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEM 387

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 P  VT+  ++   C   ++  A  L   +   G   D  TYN L++G C+ G  
Sbjct: 388 QNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGK- 446

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
              +   EE+ +  G       PD   Y++I+  + K+  +  +
Sbjct: 447 ---VTDIEELKSAKGTV-----PDLGVYTSIVGEIVKKKTTKTY 482



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           AGL P    +N+L+R L   G++   ++      +F  + S G+   + ++N +I+  C+
Sbjct: 110 AGLPPEAKLFNVLMRDLVRLGELASAQN------VFDEMQSRGVRRTVVSFNTMISGMCR 163

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            G +     +  R+  +  TPD  T+ +LI+ L
Sbjct: 164 AGDLDGAETLHRRMSEAGVTPDVYTYGALIQGL 196


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 31/324 (9%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           +L    + P V ++N+L     K+   D  L +  R+N+    PD  TYN ++   C  G
Sbjct: 174 ILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVA---PDVVTYNTILRTLCDSG 230

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++     VL R L+    PD +T+T LI+  C ES + +A  L  ++R  G + DV TYN
Sbjct: 231 KLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYN 290

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LING+C+ G    A+     M +    +G  C+P+ IT++ I+  +C            
Sbjct: 291 VLINGICKEGRLDEAIKFLNNMPS----YG--CQPNVITHNIILRSMC------------ 332

Query: 260 CMASFSALNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
             ++   ++       ++R  C    + F  LI+ LC+   L  A ++ + +P  G  PN
Sbjct: 333 --STGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPN 390

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
            ++YN L+ G C + +MD    Y  + +      S G +PD+ TYN L+   CK G+V  
Sbjct: 391 SLSYNPLLHGFCKEKKMDRAIEYLDIMV------SRGCYPDIVTYNTLLTALCKDGKVDV 444

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
              I  ++     +P  +T+ ++I
Sbjct: 445 AVEILNQLSSKGCSPVLITYNTVI 468



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 154/354 (43%), Gaps = 36/354 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ V D  L  +   P V ++ IL     K       + L   +   G  PD  TYN+L
Sbjct: 234 QAMEVLDRQLQ-KECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVL 292

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK GR+      L  +      P+ +T   +++ +C+  R M+A  L + +   GC
Sbjct: 293 INGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGC 352

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              V T+N LIN LCR G    A+++ E+M          C P++++Y+ ++ G CKE  
Sbjct: 353 SPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG------CTPNSLSYNPLLHGFCKEKK 406

Query: 252 SANFLGF-SCMASFSALNKMAFYFPLVRVQC----------------------LCLNFLC 288
               + +   M S      +  Y  L+   C                      + + +  
Sbjct: 407 MDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNT 466

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +IDGL K+ K + A +L   + R GL P+++TY+ L+ GL  +G++DE   +      F 
Sbjct: 467 VIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKF------FH 520

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            L   G+ P+  TYN ++   CK  +          ++     P   T+T LI+
Sbjct: 521 DLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIE 574



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 132/283 (46%), Gaps = 29/283 (10%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  PD      LI  FC++G+      V+  + +S   PD +T+  LI   C    I  A
Sbjct: 144 GDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNA 203

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             +  ++ V     DV TYNT++  LC +G    A+ + +       +    C PD ITY
Sbjct: 204 LQVLDRMNVAP---DVVTYNTILRTLCDSGKLKQAMEVLDR------QLQKECYPDVITY 254

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           + +I+  CKE+G    +          L++M        V    + +  LI+G+CK  +L
Sbjct: 255 TILIEATCKESGVGQAMKL--------LDEMRNKGSKPDV----VTYNVLINGICKEGRL 302

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ-MDETKHYETVFLLFKRLNSTGLFPD 358
             A +   ++P  G  PNV+T+NI++R +C+ G+ MD  K       L   +   G  P 
Sbjct: 303 DEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEK-------LLSDMLRKGCSPS 355

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + T+NILIN  C+ G +     I  ++     TP+++++  L+
Sbjct: 356 VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLL 398



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 118/270 (43%), Gaps = 35/270 (12%)

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G +  GF  L  ++     PD +  TSLI+  C   +  +A  +   L   G   DV TY
Sbjct: 128 GELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITY 187

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           N LI+G C++G    AL + + M            PD +TY+TI+  LC           
Sbjct: 188 NVLISGYCKSGEIDNALQVLDRMN---------VAPDVVTYNTILRTLCD---------- 228

Query: 259 SCMASFSALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                 S   K A      ++Q  C    + +  LI+  CK S +  A +L   +   G 
Sbjct: 229 ------SGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGS 282

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            P+VVTYN+LI G+C +G++DE   +         + S G  P++ T+NI++   C  GR
Sbjct: 283 KPDVVTYNVLINGICKEGRLDEAIKF------LNNMPSYGCQPNVITHNIILRSMCSTGR 336

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                 +   +L    +P  VTF  LI  L
Sbjct: 337 WMDAEKLLSDMLRKGCSPSVVTFNILINFL 366



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 20/251 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FNIL   L +       + + +++ + G  P+  +YN L++ FCK  ++      
Sbjct: 354 PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 413

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  ++ R C+ PD VT+ +L+  LC + ++  A  +  +L   GC   + TYNT+I+GL 
Sbjct: 414 LDIMVSRGCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLS 472

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G T  A+ L +EM           +PD ITYS+++ GL +E      + F     F  
Sbjct: 473 KVGKTERAIKLLDEMRRKG------LKPDIITYSSLVSGLSREGKVDEAIKF-----FHD 521

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L  +      +R   +  N + L  GLCK  +   A +    +      P   TY ILI 
Sbjct: 522 LEGLG-----IRPNAITYNSIML--GLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIE 574

Query: 327 GLCNDGQMDET 337
           G+  +G   E 
Sbjct: 575 GIAYEGLAKEA 585



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 9/112 (8%)

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           L +  +L+   +  +S+   G +P+++    LIRG C  G+   TK    V  +   L  
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGK---TKKATWVMEI---LEQ 177

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +G  PD+ TYN+LI+ +CK G + +   +  R+      PD VT+ ++++ L
Sbjct: 178 SGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTL 226



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 3/160 (1%)

Query: 65  ITSITPNEALCVFDYMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +T++  +  + V   +LN   S+   P + ++N +   L+K    +  + L   +   GL
Sbjct: 433 LTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGL 492

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TY+ L++   + G+V         +      P+A+T+ S++  LC   +   A  
Sbjct: 493 KPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID 552

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
               +    C+    TY  LI G+   G    AL+L  E+
Sbjct: 553 FLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 592


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 151/319 (47%), Gaps = 24/319 (7%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           ++P + +FN +   L K    +    +F  +   GL PD  +YN L++ +CK+G +    
Sbjct: 219 AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL 278

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            V   + +    PD VTFTSLI   C    + +A AL  ++R  G  ++  T+  LI+G 
Sbjct: 279 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 338

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G    AL   EEM     +  VVC      Y+ +I+G CK            +    
Sbjct: 339 CKKGFLDDALLAVEEMRKCGIQPSVVC------YNALINGYCK------------LGRMD 380

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
              ++       RV+   + +  +I G CK+  L  A +L Q + + G++P+ +TY+ LI
Sbjct: 381 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           RGLC + ++++         LF+ +   G+ PD +TY  LI+  CK G V     +   +
Sbjct: 441 RGLCEEKRLNDACE------LFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEM 494

Query: 386 LPSCFTPDAVTFTSLIKIL 404
           +     PD VT++ LI  L
Sbjct: 495 IRKGVLPDVVTYSVLINGL 513



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 151/328 (46%), Gaps = 31/328 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N L     K    D    L + +    + PD  TY+ +I+ +CK+G +   F 
Sbjct: 360 QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQ 419

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L+    PDA+T++SLI+ LC E R+ +A  LF  +   G + D FTY TLI+G C
Sbjct: 420 LNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHC 479

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G+   AL+L +EM       GV+  PD +TYS +I+GL K A +          +   
Sbjct: 480 KEGNVEKALSLHDEMIRK----GVL--PDVVTYSVLINGLSKSARTKE--------AHRL 525

Query: 267 LNKMAFYFPL---VRVQCLCL--------NFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L K+    P+   ++   L L        + + L+ G C    +K A +++QS+      
Sbjct: 526 LFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWK 585

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ILI G C  G + +   +       K++  +G  P+  +   L+    + G V
Sbjct: 586 LDGSVYSILIHGHCRGGNVRKALSFH------KQMLRSGFSPNSTSTISLVRGLFEEGMV 639

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKI 403
                    +L  C   DA    +LI +
Sbjct: 640 VEADNAIQDLLTCCPLADAEASKALIDL 667



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 136/310 (43%), Gaps = 59/310 (19%)

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +LR    P+  T+  L++ LCA  R+ EA  +   +R  GC  +  TYNTL+   CR
Sbjct: 140 LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCR 199

Query: 208 TG-----HTIVAL---------NL--FEEMANG-------NGEFGVVCE-------PDAI 237
            G       +V+L         NL  F  M NG        G   V  E       PD +
Sbjct: 200 AGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVV 259

Query: 238 TYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLN----------- 285
           +Y+T++ G CK       L  FS M     +  +  +  L+   C   N           
Sbjct: 260 SYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQM 319

Query: 286 -----------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
                      F  LIDG CK   L  A    + + + G+ P+VV YN LI G C  G+M
Sbjct: 320 RERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRM 379

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           D  +       L + + +  + PD+ TY+ +I+ +CK+G + S F +  ++L     PDA
Sbjct: 380 DLARE------LIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 433

Query: 395 VTFTSLIKIL 404
           +T++SLI+ L
Sbjct: 434 ITYSSLIRGL 443


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 150/319 (47%), Gaps = 24/319 (7%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           ++P + +FN +   L K    +    +F  +   GL PD  +YN L++ +CK+G +    
Sbjct: 77  AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL 136

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            V   + +    PD VTFTSLI   C    + +A AL  ++R  G  ++  T+  LI+G 
Sbjct: 137 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 196

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G    AL   EEM     + G+  +P  + Y+ +I+G CK            +    
Sbjct: 197 CKKGFLDDALLAVEEMR----KCGI--QPSVVCYNALINGYCK------------LGRMD 238

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
              ++       RV+   + +  +I G CK+  L  A +L Q + + G++P+ +TY+ LI
Sbjct: 239 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 298

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           RGLC      E K       LF+ +   G+ PD +TY  LI+  CK G V     +   +
Sbjct: 299 RGLC------EEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEM 352

Query: 386 LPSCFTPDAVTFTSLIKIL 404
           +     PD VT++ LI  L
Sbjct: 353 IRKGVLPDVVTYSVLINGL 371



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 148/309 (47%), Gaps = 36/309 (11%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G+ P+ YTYNIL+   C  GR+     V+G +  +   P+AVT+ +L+   C    +  A
Sbjct: 5   GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64

Query: 180 AALFTKLRVFG-CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
             + + +R  G  + ++ T+N+++NGLC+ G    A  +F+EM            PD ++
Sbjct: 65  ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREG------LAPDVVS 118

Query: 239 YSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLN------------ 285
           Y+T++ G CK       L  FS M     +  +  +  L+   C   N            
Sbjct: 119 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 178

Query: 286 ----------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                     F  LIDG CK   L  A    + + + G+ P+VV YN LI G C  G+MD
Sbjct: 179 ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 238

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
             +       L + + +  + PD+ TY+ +I+ +CK+G + S F +  ++L     PDA+
Sbjct: 239 LARE------LIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAI 292

Query: 396 TFTSLIKIL 404
           T++SLI+ L
Sbjct: 293 TYSSLIRGL 301



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 151/328 (46%), Gaps = 31/328 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N L     K    D    L + +    + PD  TY+ +I+ +CK+G +   F 
Sbjct: 218 QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQ 277

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L+    PDA+T++SLI+ LC E R+ +A  LF  +   G + D FTY TLI+G C
Sbjct: 278 LNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHC 337

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G+   AL+L +EM       GV+  PD +TYS +I+GL K A +          +   
Sbjct: 338 KEGNVEKALSLHDEMIRK----GVL--PDVVTYSVLINGLSKSARTKE--------AHRL 383

Query: 267 LNKMAFYFPL---VRVQCLCL--------NFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L K+    P+   ++   L L        + + L+ G C    +K A +++QS+      
Sbjct: 384 LFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWK 443

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ILI G C  G + +   +       K++  +G  P+  +   L+    + G V
Sbjct: 444 LDGSVYSILIHGHCRGGNVRKALSFH------KQMLRSGFSPNSTSTISLVRGLFEEGMV 497

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKI 403
                    +L  C   DA    +LI +
Sbjct: 498 VEADNAIQDLLTCCPLADAEASKALIDL 525


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 159/336 (47%), Gaps = 26/336 (7%)

Query: 68  ITPNEALCVFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
           +   E + V+ ++  M   +  P V +FNIL   L     ++    L +++  +G  P  
Sbjct: 169 VKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTI 228

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            TYN +++ +CK GR      +L  +       D  T+  LI DLC  +RI +   L   
Sbjct: 229 VTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRD 288

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +R      +  TYNTLING    G  ++A  L  EM +    FG+   P+ +T++ +IDG
Sbjct: 289 MRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLS----FGL--SPNHVTFNALIDG 342

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
              E             +F    KM +      +    +++  L+DGLCK ++  +AR  
Sbjct: 343 HISE------------GNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGF 390

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           +  + R G+    +TY  +I GLC +G +DE        +L   ++  G+ PD+ TY+ L
Sbjct: 391 YMRMKRNGVCVGRITYTGMIDGLCKNGFLDE------AVVLLNEMSKDGIDPDIVTYSAL 444

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           IN FCK+GR  +   I  RI     +P+ + +++LI
Sbjct: 445 INGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 480



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 147/342 (42%), Gaps = 29/342 (8%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G I+     EAL +F YM+  +   P   S+ +L   L K   +D     + R+   G+
Sbjct: 341 DGHISEGNFKEALKMF-YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGV 399

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
              R TY  +I+  CK G +    V+L  + +    PD VT+++LI   C   R   A  
Sbjct: 400 CVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKE 459

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYS 240
           +  ++   G   +   Y+TLI   CR G    A+ ++E M   G+         D  T++
Sbjct: 460 IVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTR-------DHFTFN 512

Query: 241 TIIDGLCKEAGSANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
            ++  LCK    A    F  CM S   L                ++F CLI+G     + 
Sbjct: 513 VLVTSLCKAGKVAEAEEFMRCMTSDGILPN-------------TVSFDCLINGYGNSGEG 559

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A  +F  + + G  P   TY  L++GLC  G + E + +       K L++     D 
Sbjct: 560 LKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKF------LKSLHAVPAAVDT 613

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             YN L+   CK G ++    +FG ++     PD+ T+TSLI
Sbjct: 614 VMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLI 655



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 147/358 (41%), Gaps = 39/358 (10%)

Query: 59  SSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL 118
           +SGEG        +A  VFD M  +    P   ++  L   L K  H        K L+ 
Sbjct: 555 NSGEG-------LKAFSVFDEMTKV-GHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHA 606

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
                D   YN L+   CK G ++    + G +++    PD+ T+TSLI  LC + + + 
Sbjct: 607 VPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVI 666

Query: 179 AAALFTKLRVFGCEL-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           A     +    G  L +   Y   ++G+ + G     +   E+M N      +   PD +
Sbjct: 667 AILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDN------LGHTPDIV 720

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLC 294
           T + +ID            G+S M      N +    P +  Q    N   +  L+ G  
Sbjct: 721 TTNAMID------------GYSRMGKIEKTNDL---LPEMGNQNGGPNLTTYNILLHGYS 765

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K   +  +  L++S+   G++P+ +T + L+ G+C      E+   E    + K     G
Sbjct: 766 KRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGIC------ESNMLEIGLKILKAFICRG 819

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           +  D YT+N+LI+  C  G ++  F +   +     + D  T  +++ +L  N  F++
Sbjct: 820 VEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQE 877



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 132/320 (41%), Gaps = 30/320 (9%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P +T++NIL    +K K   T   L++ + L G+ PD+ T + L+   C+   +  G  +
Sbjct: 752  PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKI 811

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            L   +      D  TF  LI   CA   I  A  L   +   G  LD  T + +++ L R
Sbjct: 812  LKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNR 871

Query: 208  TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                  +  +  EM+           P++  Y  +I+GLC+              +F   
Sbjct: 872  NHRFQESRMVLHEMSKQG------ISPESRKYIGLINGLCRVG--------DIKTAFVVK 917

Query: 268  NKMAFYF---PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             +M  +    P V           ++  L K  K   A  L + + +  L+P + ++  L
Sbjct: 918  EEMIAHKICPPNVAES-------AMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTL 970

Query: 325  IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
            +   C +G + E      V      +++ GL  DL +YN+LI   C  G ++  F ++  
Sbjct: 971  MHLCCKNGNVIEALELRVV------MSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEE 1024

Query: 385  ILPSCFTPDAVTFTSLIKIL 404
            +    F  +A T+ +LI+ L
Sbjct: 1025 MKGDGFLANATTYKALIRGL 1044



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 1/116 (0%)

Query: 70   PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
             +EA  +  +ML M+   P + SF  L     K  +    L L   ++  GL  D  +YN
Sbjct: 945  ADEATLLLRFMLKMKLV-PTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYN 1003

Query: 130  ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            +LI   C  G ++  F +   +    F  +A T+ +LI+ L A       A +  K
Sbjct: 1004 VLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIILK 1059


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 155/324 (47%), Gaps = 31/324 (9%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           +L    + P V ++N+L     K+   D  L +  R+N+    PD  TYN ++   C  G
Sbjct: 117 ILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVA---PDVVTYNTILRTLCDSG 173

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++     VL R L+    PD +T+T LI+  C ES + +A  L  ++R  G + DV TYN
Sbjct: 174 KLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYN 233

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LING+C+ G    A+     M +    +G  C+P+ IT++ I+  +C            
Sbjct: 234 VLINGICKEGRLDEAIKFLNNMPS----YG--CQPNVITHNIILRSMC------------ 275

Query: 260 CMASFSALNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
             ++   ++       ++R  C    + F  LI+ LC+   L  A ++ + +P  G  PN
Sbjct: 276 --STGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPN 333

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
            ++YN L+ G C + +MD    Y  + +      S G +PD+ TYN L+   CK G+V  
Sbjct: 334 SLSYNPLLHGFCKEKKMDRAIEYLDIMV------SRGCYPDIVTYNTLLTALCKDGKVDV 387

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
              I  ++     +P  +T+ ++I
Sbjct: 388 AVEILNQLSSKGCSPVLITYNTVI 411



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 154/354 (43%), Gaps = 36/354 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ V D  L  +   P V ++ IL     K       + L   +   G  PD  TYN+L
Sbjct: 177 QAMEVLDRQLQ-KECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVL 235

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK GR+      L  +      P+ +T   +++ +C+  R M+A  L + +   GC
Sbjct: 236 INGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGC 295

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              V T+N LIN LCR G    A+++ E+M          C P++++Y+ ++ G CKE  
Sbjct: 296 SPSVVTFNILINFLCRQGLLGRAIDILEKMPMHG------CTPNSLSYNPLLHGFCKEKK 349

Query: 252 SANFLGF-SCMASFSALNKMAFYFPLVRVQC----------------------LCLNFLC 288
               + +   M S      +  Y  L+   C                      + + +  
Sbjct: 350 MDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNT 409

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +IDGL K+ K + A +L   + R GL P+++TY+ L+ GL  +G++DE   +      F 
Sbjct: 410 VIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKF------FH 463

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            L   G+ P+  TYN ++   CK  +          ++     P   T+T LI+
Sbjct: 464 DLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIE 517



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 132/283 (46%), Gaps = 29/283 (10%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  PD      LI  FC++G+      V+  + +S   PD +T+  LI   C    I  A
Sbjct: 87  GDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNA 146

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             +  ++ V     DV TYNT++  LC +G    A+ + +       +    C PD ITY
Sbjct: 147 LQVLDRMNVAP---DVVTYNTILRTLCDSGKLKQAMEVLDR------QLQKECYPDVITY 197

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           + +I+  CKE+G           +   L++M        V    + +  LI+G+CK  +L
Sbjct: 198 TILIEATCKESGVGQ--------AMKLLDEMRNKGSKPDV----VTYNVLINGICKEGRL 245

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ-MDETKHYETVFLLFKRLNSTGLFPD 358
             A +   ++P  G  PNV+T+NI++R +C+ G+ MD  K       L   +   G  P 
Sbjct: 246 DEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEK-------LLSDMLRKGCSPS 298

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + T+NILIN  C+ G +     I  ++     TP+++++  L+
Sbjct: 299 VVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLL 341



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 118/270 (43%), Gaps = 35/270 (12%)

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G +  GF  L  ++     PD +  TSLI+  C   +  +A  +   L   G   DV TY
Sbjct: 71  GELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITY 130

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           N LI+G C++G    AL + + M            PD +TY+TI+  LC           
Sbjct: 131 NVLISGYCKSGEIDNALQVLDRMN---------VAPDVVTYNTILRTLCD---------- 171

Query: 259 SCMASFSALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                 S   K A      ++Q  C    + +  LI+  CK S +  A +L   +   G 
Sbjct: 172 ------SGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGS 225

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            P+VVTYN+LI G+C +G++DE   +         + S G  P++ T+NI++   C  GR
Sbjct: 226 KPDVVTYNVLINGICKEGRLDEAIKF------LNNMPSYGCQPNVITHNIILRSMCSTGR 279

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                 +   +L    +P  VTF  LI  L
Sbjct: 280 WMDAEKLLSDMLRKGCSPSVVTFNILINFL 309



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 20/251 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FNIL   L +       + + +++ + G  P+  +YN L++ FCK  ++      
Sbjct: 297 PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 356

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  ++ R C+ PD VT+ +L+  LC + ++  A  +  +L   GC   + TYNT+I+GL 
Sbjct: 357 LDIMVSRGCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLS 415

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G T  A+ L +EM           +PD ITYS+++ GL +E      + F     F  
Sbjct: 416 KVGKTERAIKLLDEMRRKG------LKPDIITYSSLVSGLSREGKVDEAIKF-----FHD 464

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L  +      +R   +  N + L  GLCK  +   A +    +      P   TY ILI 
Sbjct: 465 LEGLG-----IRPNAITYNSIML--GLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIE 517

Query: 327 GLCNDGQMDET 337
           G+  +G   E 
Sbjct: 518 GIAYEGLAKEA 528



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 9/112 (8%)

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           L +  +L+   +  +S+   G +P+++    LIRG C  G+   TK    V  +   L  
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGK---TKKATWVMEI---LEQ 120

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +G  PD+ TYN+LI+ +CK G + +   +  R+      PD VT+ ++++ L
Sbjct: 121 SGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTL 169



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 3/160 (1%)

Query: 65  ITSITPNEALCVFDYMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +T++  +  + V   +LN   S+   P + ++N +   L+K    +  + L   +   GL
Sbjct: 376 LTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGL 435

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TY+ L++   + G+V         +      P+A+T+ S++  LC   +   A  
Sbjct: 436 KPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID 495

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
               +    C+    TY  LI G+   G    AL+L  E+
Sbjct: 496 FLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNEL 535


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 178/367 (48%), Gaps = 46/367 (12%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNEALCVFDYML-NMRPSRPPVTSFNILFGCLAKTKHY 106
            LE+ +  R +S       S+   +AL +FD +L   RP+   V +FN +   +A+    
Sbjct: 14  ELERIILNRHRSG------SLGREDALNLFDELLPQARPA--SVHAFNSVLTVVARADSS 65

Query: 107 DT-------VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
            +        +SLF  +  +G+        ILI CFC +GR+   F      L++ +   
Sbjct: 66  SSPRHSAALAVSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQ 125

Query: 160 AVTFTSLIKDLCAESRIMEAAAL-FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
            VT   LIK LC  +R  +A  + F ++   G   DVF+YN LI GLC    +  AL L 
Sbjct: 126 NVTLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELL 185

Query: 219 EEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
             M A+G    G  C P+ ++Y+T+IDG  KE                 ++K  F F  +
Sbjct: 186 IHMTADG----GYNCSPNVVSYNTVIDGFFKEG---------------EVDKAYFLFHEM 226

Query: 278 RVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
             Q L    + +  LIDGLCK   +  A  + Q +   G+MP+  TYNI+IRG C+ GQ+
Sbjct: 227 MGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQL 286

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           +E         L K+++ +GL PD+ TY++LI  +CKIGR +    +F  ++     P++
Sbjct: 287 EEA------VRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNS 340

Query: 395 VTFTSLI 401
             +  L+
Sbjct: 341 TIYHILL 347



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 160/347 (46%), Gaps = 60/347 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +  +M + +   P   ++NI+          +  + L K+++ +GL PD  TY++
Sbjct: 252 DKAVAILQHMFD-KGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSL 310

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL------------IKDL-------- 170
           LI  +CK+GR +    V   ++R    P++  +  L            ++DL        
Sbjct: 311 LIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDG 370

Query: 171 ------------CAESR---IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
                       CA ++   + +A   FT++R  G   DV +Y+T+I+ LC+TG    A+
Sbjct: 371 IPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAV 430

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
             F +M +          P+ I+++++I GLC             +  +  + ++AF   
Sbjct: 431 YHFNQMVSEG------LSPNIISFTSLIHGLC------------SIGEWKKVEELAFEMI 472

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
              +    +    ++D LCK  ++  A++ F  +   G+ P+VV+YN LI G C  G+MD
Sbjct: 473 NRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMD 532

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           E+           R+ S GL PD +TYN L+N + K GRV     ++
Sbjct: 533 ES------IKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALY 573



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 144/332 (43%), Gaps = 25/332 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+N +     K    D    LF  +   GL PD  TYN LI+  CK   +     +
Sbjct: 198 PNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAI 257

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      PD  T+  +I+  C+  ++ EA  L  K+   G + DV TY+ LI   C+
Sbjct: 258 LQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCK 317

Query: 208 TGHTIVALNLFEEMA---------------NGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            G    A ++F+ M                +G    G + +   +    I DG+  E  +
Sbjct: 318 IGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRA 377

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSL 309
            N L     A   A++K    F  +R   L    +++  +I  LCK  +++ A   F  +
Sbjct: 378 FNIL-ICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQM 436

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              GL PN++++  LI GLC+ G+  + +  E  F +  R    G+ PD    N +++  
Sbjct: 437 VSEGLSPNIISFTSLIHGLCSIGEWKKVE--ELAFEMINR----GIHPDAIFMNTIMDNL 490

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK GRV      F  ++     PD V++ +LI
Sbjct: 491 CKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLI 522



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 147/334 (44%), Gaps = 25/334 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+N R   P     N +   L K          F  +   G+ PD  +YN LI+ +C +G
Sbjct: 471 MIN-RGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVG 529

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++      L R++     PD+ T+ SL+       R+ +A AL+ ++     +    T N
Sbjct: 530 KMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSN 589

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            +++GL + G  + A  L+ +M +   +  +       TY+T++ GLC+     N     
Sbjct: 590 IMLHGLFQAGRIVAARELYMKMVDRGTQLRIE------TYNTVLGGLCE-----NSCVDE 638

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            +  F  L    F    VR       F  +I+ L K+ ++  A+ LF ++   G +P+V+
Sbjct: 639 ALRMFEDLRSKEFELD-VRT------FSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVI 691

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY+++I+    +G ++E+ +      LF  +   G   D +  NI++    + G V    
Sbjct: 692 TYSLMIKSHIEEGLLEESDN------LFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAG 745

Query: 380 VIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
               +I    F+ +A T   LI I+    + ++V
Sbjct: 746 TYLTKIDEKNFSLEASTAALLIPIVSEKKYQKEV 779


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 160/334 (47%), Gaps = 27/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYN 129
            +AL  F+ M       P   ++N++   L K +       + K + +   + PD  TY+
Sbjct: 24  KQALACFEKMREFVA--PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYS 81

Query: 130 ILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            +IN FCK G +     +L  ++ R    PD VT+TS++  LC + ++  A  +  ++++
Sbjct: 82  TVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKL 141

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G E D FT++ LI G C       AL L++E+   +       +PD +TY+ +IDG CK
Sbjct: 142 KGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSS-----WKPDVVTYTALIDGFCK 196

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
              S N      M       K     P V      + +  L+ GLCK   L  A +LF+ 
Sbjct: 197 ---SGNLEKAMKMLGVMEGRKC---VPNV------VTYSSLLHGLCKAGDLDQALDLFRR 244

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G +PNVVTY  LI GLC   ++D  +      LL   + +T   PD  +YN L++ 
Sbjct: 245 MTSKGCVPNVVTYTTLIHGLCAAHKVDAAR------LLMDEMTATCCPPDTVSYNALLDG 298

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +C++GR+     +F  +      PD +T+T L++
Sbjct: 299 YCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVR 332



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 157/355 (44%), Gaps = 63/355 (17%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  +   L +    D    + + + L G+ PD++T++ LI  +C   +V     +
Sbjct: 111 PDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKL 170

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              IL  S + PD VT+T+LI   C    + +A  +   +    C  +V TY++L++GLC
Sbjct: 171 YKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLC 230

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASF 264
           + G    AL+LF  M +        C P+ +TY+T+I GLC   +  +A  L     A+ 
Sbjct: 231 KAGDLDQALDLFRRMTSKG------CVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC 284

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
              + +++                L+DG C++ +++ A++LF+ +     +P+ +TY  L
Sbjct: 285 CPPDTVSYN--------------ALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCL 330

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI-------------------- 364
           +RG CN  +++E +     FLL     + G+ PD+ TY+I                    
Sbjct: 331 VRGFCNASRLEEAR-----FLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQE 385

Query: 365 ---------------LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                          LI+  CK GRV     +   ++     P   TF S+I  L
Sbjct: 386 MIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGAL 440



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 150/334 (44%), Gaps = 27/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL ++  +L     +P V ++  L     K+ + +  + +   +      P+  TY+ 
Sbjct: 165 DEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSS 224

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G +     +  R+      P+ VT+T+LI  LCA  ++  A  L  ++    
Sbjct: 225 LLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATC 284

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  D  +YN L++G CR G    A  LF+EMA  +      C PD ITY+ ++ G C  +
Sbjct: 285 CPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKS------CLPDRITYTCLVRGFCNAS 338

Query: 251 --GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
               A FL    M + + ++     + +V            + G  +  +   A E  Q 
Sbjct: 339 RLEEARFL-LENMKTAAGIDPDVVTYSIV------------VAGYSRAKRFVEAAEFIQE 385

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +    + PN VTY+ LI GLC  G++D          + K + +  + P + T+N +I  
Sbjct: 386 MIARNVAPNAVTYSSLIDGLCKAGRVDHAME------VLKNMVNKRVEPSVGTFNSVIGA 439

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            C++G +   + +   +      P  VT+T+L++
Sbjct: 440 LCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLE 473



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 132/303 (43%), Gaps = 23/303 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++  R   P V +++ L   L K    D  L LF+R+   G  P+  TY  LI+  C   
Sbjct: 209 VMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAH 268

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           +V    +++  +  +C  PD V++ +L+   C   RI EA  LF ++    C  D  TY 
Sbjct: 269 KVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYT 328

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            L+ G C       A  L E M    G      +PD +TYS ++             G+S
Sbjct: 329 CLVRGFCNASRLEEARFLLENMKTAAG-----IDPDVVTYSIVV------------AGYS 371

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
               F    +         V    + +  LIDGLCK  ++  A E+ +++    + P+V 
Sbjct: 372 RAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVG 431

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           T+N +I  LC  G MDE       + L   + + GL P + TY  L+  F + GR+   +
Sbjct: 432 TFNSVIGALCRLGDMDEA------WKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAY 485

Query: 380 VIF 382
            +F
Sbjct: 486 ELF 488



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 140/323 (43%), Gaps = 77/323 (23%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P  VT+T +I   C  +++ +A A F K+R F    +  TYN ++NGLC+   T  A  +
Sbjct: 5   PTVVTWTIIIDGFCKANQLKQALACFEKMREF-VAPNERTYNVVVNGLCKARLTSKAYEV 63

Query: 218 FEEMANG-------------------NGEFGVVCE------------PDAITYSTIIDGL 246
            +EM +G                    GE    CE            PD +TY++++DGL
Sbjct: 64  LKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGL 123

Query: 247 CKEAGSANFLGFSCMA--------------SFSAL-----------NKMAFYFPLVRVQC 281
           C++      +  +C                +FSAL             +  Y  ++    
Sbjct: 124 CRDGK----MDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSS 179

Query: 282 L---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                + +  LIDG CK   L+ A ++   +     +PNVVTY+ L+ GLC  G +D+  
Sbjct: 180 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQA- 238

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  LF+R+ S G  P++ TY  LI+  C   +V +  ++   +  +C  PD V++ 
Sbjct: 239 -----LDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYN 293

Query: 399 SLI-------KILEINSFFRQVA 414
           +L+       +I E    F+++A
Sbjct: 294 ALLDGYCRLGRIEEAKQLFKEMA 316



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 126/310 (40%), Gaps = 62/310 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F  M + +   P V ++  L   L      D    L   +  T   PD  +YN 
Sbjct: 236 DQALDLFRRMTS-KGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNA 294

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR-VF 189
           L++ +C++GR+     +   +      PD +T+T L++  C  SR+ EA  L   ++   
Sbjct: 295 LLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA 354

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G + DV TY+ ++ G  R    + A    +EM   N        P+A+TYS++IDGLCK 
Sbjct: 355 GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARN------VAPNAVTYSSLIDGLCK- 407

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
           AG  +        +   L  M       RV+     F  +I  LC++  +  A +L  ++
Sbjct: 408 AGRVDH-------AMEVLKNMVNK----RVEPSVGTFNSVIGALCRLGDMDEAWKLLVAM 456

Query: 310 PRAGLMPNVVTY------------------------------------------NILIRG 327
              GL P +VTY                                          + LIRG
Sbjct: 457 AAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRG 516

Query: 328 LCNDGQMDET 337
           LC   ++D+ 
Sbjct: 517 LCKAREIDKA 526



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 26/213 (12%)

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+  V T+  +I+G C+      AL  FE+M     EF     P+  TY+ +++GLCK  
Sbjct: 3   CQPTVVTWTIIIDGFCKANQLKQALACFEKMR----EF---VAPNERTYNVVVNGLCKAR 55

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL- 309
            ++         ++  L +M        V    + +  +I+G CK  ++  A E+ + + 
Sbjct: 56  LTSK--------AYEVLKEMR---DGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMV 104

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            R G+ P+VVTY  ++ GLC DG+MD          + + +   G+ PD +T++ LI  +
Sbjct: 105 TRDGIAPDVVTYTSVVDGLCRDGKMDRACE------MVREMKLKGVEPDKFTFSALITGW 158

Query: 370 CKIGRVSSGFVIFGRIL-PSCFTPDAVTFTSLI 401
           C   +V     ++  IL  S + PD VT+T+LI
Sbjct: 159 CNARKVDEALKLYKEILTSSSWKPDVVTYTALI 191



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 97/231 (41%), Gaps = 19/231 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++I+    ++ K +       + +    + P+  TY+ LI+  CK GRV H   V
Sbjct: 358 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEV 417

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     P   TF S+I  LC    + EA  L   +   G E  + TY TL+ G  R
Sbjct: 418 LKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSR 477

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCE--PDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           TG   +A  LFE M     +        P+   +S +I GLCK              +  
Sbjct: 478 TGRMEIAYELFEVMRKKAKKSSSAANLVPEQ-AFSALIRGLCK--------------ARE 522

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCL--IDGLCKISKLKIARELFQSLPRAGL 314
               MA    L   +C      CL  +DGL +  + + A +L  S+ + GL
Sbjct: 523 IDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 150/319 (47%), Gaps = 24/319 (7%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           ++P + +FN +   L K    +    +F  +   GL PD  +YN L++ +CK+G +    
Sbjct: 219 AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL 278

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            V   + +    PD VTFTSLI   C    + +A AL  ++R  G  ++  T+  LI+G 
Sbjct: 279 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 338

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G    AL   EEM     + G+  +P  + Y+ +I+G CK            +    
Sbjct: 339 CKKGFLDDALLAVEEMR----KCGI--QPSVVCYNALINGYCK------------LGRMD 380

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
              ++       RV+   + +  +I G CK+  L  A +L Q + + G++P+ +TY+ LI
Sbjct: 381 LARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLI 440

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           RGLC      E K       LF+ +   G+ PD +TY  LI+  CK G V     +   +
Sbjct: 441 RGLC------EEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEM 494

Query: 386 LPSCFTPDAVTFTSLIKIL 404
           +     PD VT++ LI  L
Sbjct: 495 IRKGVLPDVVTYSVLINGL 513



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 151/328 (46%), Gaps = 31/328 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N L     K    D    L + +    + PD  TY+ +I+ +CK+G +   F 
Sbjct: 360 QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQ 419

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L+    PDA+T++SLI+ LC E R+ +A  LF  +   G + D FTY TLI+G C
Sbjct: 420 LNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHC 479

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G+   AL+L +EM       GV+  PD +TYS +I+GL K A +          +   
Sbjct: 480 KEGNVEKALSLHDEMIRK----GVL--PDVVTYSVLINGLSKSARTKE--------AHRL 525

Query: 267 LNKMAFYFPL---VRVQCLCL--------NFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L K+    P+   ++   L L        + + L+ G C    +K A +++QS+      
Sbjct: 526 LFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWK 585

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ILI G C  G + +   +       K++  +G  P+  +   L+    + G V
Sbjct: 586 LDGSVYSILIHGHCRGGNVRKALSFH------KQMLRSGFSPNSTSTISLVRGLFEEGMV 639

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKI 403
                    +L  C   DA    +LI +
Sbjct: 640 VEADNAIQDLLTCCPLADAEASKALIDL 667



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 136/310 (43%), Gaps = 59/310 (19%)

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +LR    P+  T+  L++ LCA  R+ EA  +   +R  GC  +  TYNTL+   CR
Sbjct: 140 LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCR 199

Query: 208 TG-----HTIVAL---------NL--FEEMANG-------NGEFGVVCE-------PDAI 237
            G       +V+L         NL  F  M NG        G   V  E       PD +
Sbjct: 200 AGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVV 259

Query: 238 TYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLN----------- 285
           +Y+T++ G CK       L  FS M     +  +  +  L+   C   N           
Sbjct: 260 SYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQM 319

Query: 286 -----------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
                      F  LIDG CK   L  A    + + + G+ P+VV YN LI G C  G+M
Sbjct: 320 RERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRM 379

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           D  +       L + + +  + PD+ TY+ +I+ +CK+G + S F +  ++L     PDA
Sbjct: 380 DLARE------LIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 433

Query: 395 VTFTSLIKIL 404
           +T++SLI+ L
Sbjct: 434 ITYSSLIRGL 443


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 159/336 (47%), Gaps = 26/336 (7%)

Query: 68  ITPNEALCVFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
           +   E + V+ ++  M   +  P V +FNIL   L     ++    L +++  +G  P  
Sbjct: 169 VKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTI 228

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            TYN +++ +CK GR      +L  +       D  T+  LI DLC  +RI +   L   
Sbjct: 229 VTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRD 288

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +R      +  TYNTLING    G  ++A  L  EM +    FG+   P+ +T++ +IDG
Sbjct: 289 MRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLS----FGL--SPNHVTFNALIDG 342

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
              E             +F    KM +      +    +++  L+DGLCK ++  +AR  
Sbjct: 343 HISE------------GNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGF 390

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           +  + R G+    +TY  +I GLC +G +DE        +L   ++  G+ PD+ TY+ L
Sbjct: 391 YMRMKRNGVCVGRITYTGMIDGLCKNGFLDEA------VVLLNEMSKDGIDPDIVTYSAL 444

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           IN FCK+GR  +   I  RI     +P+ + +++LI
Sbjct: 445 INGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 480



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 147/342 (42%), Gaps = 29/342 (8%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G I+     EAL +F YM+  +   P   S+ +L   L K   +D     + R+   G+
Sbjct: 341 DGHISEGNFKEALKMF-YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGV 399

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
              R TY  +I+  CK G +    V+L  + +    PD VT+++LI   C   R   A  
Sbjct: 400 CVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKE 459

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYS 240
           +  ++   G   +   Y+TLI   CR G    A+ ++E M   G+         D  T++
Sbjct: 460 IVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTR-------DHFTFN 512

Query: 241 TIIDGLCKEAGSANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
            ++  LCK    A    F  CM S   L                ++F CLI+G     + 
Sbjct: 513 VLVTSLCKAGKVAEAEEFMRCMTSDGILPN-------------TVSFDCLINGYGNSGEG 559

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A  +F  + + G  P   TY  L++GLC  G + E + +       K L++     D 
Sbjct: 560 LKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKF------LKSLHAVPAAVDT 613

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             YN L+   CK G ++    +FG ++     PD+ T+TSLI
Sbjct: 614 VMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLI 655



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 182/450 (40%), Gaps = 74/450 (16%)

Query: 30  PSYPTTTATLRLTVK--DRASLEQFLKERCKSSGEGDITS--ITPNEALCV---FD---- 78
           PS  T  A L   VK  +  S+  FLKE  K     D+ +  I  N  LC    F+    
Sbjct: 156 PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILIN-VLCAEGSFEKSSY 214

Query: 79  YMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
            M  M  S   P + ++N +     K   +   + L   +   G+  D  TYN+LI+  C
Sbjct: 215 LMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLC 274

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           +  R++ G+++L  + +    P+ VT+ +LI     E +++ A+ L  ++  FG   +  
Sbjct: 275 RSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHV 334

Query: 197 TYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           T+N LI+G    G+   AL +F  M A G         P  ++Y  ++DGLCK A     
Sbjct: 335 TFNALIDGHISEGNFKEALKMFYMMEAKG-------LTPSEVSYGVLLDGLCKNAEFDLA 387

Query: 256 LGF--------SCMASFS------ALNKMAFYFPLV---------RVQCLCLNFLCLIDG 292
            GF         C+   +       L K  F    V          +    + +  LI+G
Sbjct: 388 RGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALING 447

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET-KHYETVFL------ 345
            CK+ + K A+E+   + R GL PN + Y+ LI   C  G + E  + YE + L      
Sbjct: 448 FCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRD 507

Query: 346 ----------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
                                   + + S G+ P+  +++ LIN +   G     F +F 
Sbjct: 508 HFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFD 567

Query: 384 RILPSCFTPDAVTFTSLIKILEINSFFRQV 413
            +      P   T+ SL+K L      R+ 
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGHLREA 597



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 147/358 (41%), Gaps = 39/358 (10%)

Query: 59  SSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL 118
           +SGEG        +A  VFD M  +    P   ++  L   L K  H        K L+ 
Sbjct: 555 NSGEG-------LKAFSVFDEMTKV-GHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHA 606

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
                D   YN L+   CK G ++    + G +++    PD+ T+TSLI  LC + + + 
Sbjct: 607 VPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVI 666

Query: 179 AAALFTKLRVFGCEL-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           A     +    G  L +   Y   ++G+ + G     +   E+M N      +   PD +
Sbjct: 667 AILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDN------LGHTPDIV 720

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLC 294
           T + +ID            G+S M      N +    P +  Q    N   +  L+ G  
Sbjct: 721 TTNAMID------------GYSRMGKIEKTNDL---LPEMGNQNGGPNLTTYNILLHGYS 765

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K   +  +  L++S+   G++P+ +T + L+ G+C      E+   E    + K     G
Sbjct: 766 KRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGIC------ESNMLEIGLKILKAFICRG 819

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           +  D YT+N+LI+  C  G ++  F +   +     + D  T  +++ +L  N  F++
Sbjct: 820 VEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQE 877



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 132/320 (41%), Gaps = 30/320 (9%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P +T++NIL    +K K   T   L++ + L G+ PD+ T + L+   C+   +  G  +
Sbjct: 752  PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKI 811

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            L   +      D  TF  LI   CA   I  A  L   +   G  LD  T + +++ L R
Sbjct: 812  LKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNR 871

Query: 208  TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                  +  +  EM+           P++  Y  +I+GLC+              +F   
Sbjct: 872  NHRFQESRMVLHEMSKQG------ISPESRKYIGLINGLCRVG--------DIKTAFVVK 917

Query: 268  NKMAFYF---PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             +M  +    P V           ++  L K  K   A  L + + +  L+P + ++  L
Sbjct: 918  EEMIAHKICPPNVAES-------AMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTL 970

Query: 325  IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
            +   C +G + E      V      +++ GL  DL +YN+LI   C  G ++  F ++  
Sbjct: 971  MHLCCKNGNVIEALELRVV------MSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEE 1024

Query: 385  ILPSCFTPDAVTFTSLIKIL 404
            +    F  +A T+ +LI+ L
Sbjct: 1025 MKGDGFLANATTYKALIRGL 1044



 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 1/116 (0%)

Query: 70   PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
             +EA  +  +ML M+   P + SF  L     K  +    L L   ++  GL  D  +YN
Sbjct: 945  ADEATLLLRFMLKMKLV-PTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYN 1003

Query: 130  ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            +LI   C  G ++  F +   +    F  +A T+ +LI+ L A       A +  K
Sbjct: 1004 VLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIILK 1059


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 163/336 (48%), Gaps = 28/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYT 127
            +A  VFD +L  R     +   N     +A+      V S + R+   G   + P+  T
Sbjct: 36  EDARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCT 93

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKL 186
           Y ILI   C  GR+  GF  LG +++  F  DA+ FT L+K LCA+ R  +A  +   ++
Sbjct: 94  YGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 153

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              GC  +VF+YN L+ GLC    +  AL L + M +  G+    C PD ++Y+T+I+G 
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGF 209

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            KE             ++   ++M     L  V    + +  +I  LCK   +  A E+ 
Sbjct: 210 FKEG--------DLDKAYGTYHEMLDRGILPNV----VTYSSIIAALCKAQAMDKAMEVL 257

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            S+ + G+MPN  TYN ++ G C+ GQ  E   +       K+++S G+ PD+ TYN L+
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF------LKKMHSDGVEPDVVTYNSLM 311

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  CK GR +    +F  +      P+  T+ +L++
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 146/318 (45%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P    F+IL    AK    D  + +F ++   GL PD  TY  +I   CK GRV     
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              +++    +P  + + SLI  LC   +  +A  L  ++   G  LD   +N++I+  C
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G  I +  LF+ M       GV  +PD ITYST+IDG C                   
Sbjct: 491 KEGRVIESEKLFDLMV----RIGV--KPDIITYSTLIDGYC------------LAGKMDE 532

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             K+      V ++  C+ +  LI+G CKIS+++ A  LF+ +  +G+ P+++TYNI+++
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL       +T+       L+  +  +G   +L TYNI+++  CK         +F  + 
Sbjct: 593 GLF------QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 646

Query: 387 PSCFTPDAVTFTSLIKIL 404
            +    +  TF  +I  L
Sbjct: 647 LTDLQLETRTFNIMIGAL 664



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 135/305 (44%), Gaps = 29/305 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+  F+ M++ R S P    +N L   L     +D    L   +   G+  D   +N 
Sbjct: 426 EDAMRYFEQMIDERLS-PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK GRV     +   ++R    PD +T+++LI   C   ++ EA  L   +   G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CK 248
            + D  TYNTLING C+      AL LF EM +     GV   PD ITY+ I+ GL   +
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESS----GV--SPDIITYNIILQGLFQTR 598

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
              +A  L      S + L    +                ++ GLCK +    A  +FQ+
Sbjct: 599 RTAAAKELYVGITESGTQLELSTYNI--------------ILHGLCKNNLTDEALRMFQN 644

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L    L     T+NI+I  L   G+ DE K       LF  L++ GL PD+ TY+++   
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKVGRNDEAKD------LFAALSANGLVPDVRTYSLMAEN 698

Query: 369 FCKIG 373
             + G
Sbjct: 699 LIEQG 703



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 149/379 (39%), Gaps = 63/379 (16%)

Query: 80  MLNMRPSR-----PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           +L M P       P V S+  +     K    D     +  +   G+ P+  TY+ +I  
Sbjct: 184 LLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAA 243

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            CK   +     VL  ++++   P+  T+ S++   C+  +  EA     K+   G E D
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           V TYN+L++ LC+ G    A  +F+ M           +P+  TY T++ G   +     
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRG------LKPEITTYGTLLQGYATKGALVE 357

Query: 255 FLG----------------FSCM----ASFSALNKMAFYFPLVRVQCL---CLNFLCLID 291
             G                FS +    A    +++    F  +R Q L    + +  +I 
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH-----------Y 340
            LCK  +++ A   F+ +    L P  + YN LI  LC   + D+ K             
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 341 ETVFL------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           +T+F                   LF  +   G+ PD+ TY+ LI+ +C  G++     + 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 383 GRILPSCFTPDAVTFTSLI 401
             ++     PD VT+ +LI
Sbjct: 538 ASMVSVGMKPDCVTYNTLI 556


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 163/336 (48%), Gaps = 28/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYT 127
            +A  VFD +L  R     +   N     +A+      V S + R+   G   + P+  T
Sbjct: 36  EDARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCT 93

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKL 186
           Y ILI   C  GR+  GF  LG +++  F  DA+ FT L+K LCA+ R  +A  +   ++
Sbjct: 94  YGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 153

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              GC  +VF+YN L+ GLC    +  AL L + M +  G+    C PD ++Y+T+I+G 
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGF 209

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            KE             ++   ++M     L  V    + +  +I  LCK   +  A E+ 
Sbjct: 210 FKEG--------DLDKAYGTYHEMLDRGILPNV----VTYSSIIAALCKAQAMDKAMEVL 257

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            S+ + G+MPN  TYN ++ G C+ GQ  E   +       K+++S G+ PD+ TYN L+
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF------LKKMHSDGVEPDVVTYNSLM 311

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  CK GR +    +F  +      P+  T+ +L++
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 125/301 (41%), Gaps = 25/301 (8%)

Query: 71  NEALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
            EAL +   M +     PP V S+  +     K    D     +  +   G+ P+  TY+
Sbjct: 179 QEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYS 238

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +I   CK   +     VL  ++++   P+  T+ S++   C+  +  EA     K+   
Sbjct: 239 SIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD 298

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G E DV TYN+L++ LC+ G    A  +F+ M           +P+  TY T++ G   +
Sbjct: 299 GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRG------LKPEITTYGTLLQGYATK 352

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                  G   +   + ++   + F +            LI    K  K+  A  +F  +
Sbjct: 353 GALVEMHGLLDLMVRNGIHPNHYVFSI------------LICAYAKQGKVDQAMLVFSKM 400

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            + GL P+ VTY  +I  LC  G++++   Y      F+++    L P    YN LI+  
Sbjct: 401 RQQGLNPDTVTYGTVIGILCKSGRVEDAMRY------FEQMIDERLSPGNIVYNSLIHSL 454

Query: 370 C 370
           C
Sbjct: 455 C 455



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P    F+IL    AK    D  + +F ++   GL PD  TY  +I   CK GRV     
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
              +++    +P  + + SLI  LC   +  +A   F K     C ++ F +
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYFLK-----CWIEAFVW 477


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 156/326 (47%), Gaps = 25/326 (7%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           FD ML+ + S P   ++  L     +        +LF  +   GL PD  TY  LI+ +C
Sbjct: 386 FDEMLSKKIS-PDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYC 444

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           K G + + F +   +++   TP+ VT+ +LI  LC    +  A  L  ++R  G +L+V 
Sbjct: 445 KAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVC 504

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
            YN+++NG+C+ G+   A+ L +EM           +PDAITY+T+ID  C+        
Sbjct: 505 IYNSMVNGICKAGNIEQAIKLMKEMEVAG------IDPDAITYTTVIDAYCR-------- 550

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
               +      +K+        +Q   + F  L++G C +  L+    L   +   G++P
Sbjct: 551 ----LGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVP 606

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           + +TYN L++  C    M+ T        ++KR+ + G+ PD  TYNILI   CK   + 
Sbjct: 607 DAITYNTLMKQHCIRNSMNTTTK------IYKRMRNQGVAPDSNTYNILIKGHCKARNLK 660

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIK 402
             + ++  ++   + P   ++ +LIK
Sbjct: 661 EAWFLYKEMIEKGYVPTVTSYNALIK 686



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 142/321 (44%), Gaps = 24/321 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R S P V S++ +             L L   + + GL P+RYTYN +I   CK+G+
Sbjct: 284 MDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGK 343

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 VL  ++     PD V +T+LI        +  A   F ++       D  TY T
Sbjct: 344 SFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTT 403

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI G  + G  I   NLF EM +         +PD +TY+T+ID  CK     N      
Sbjct: 404 LIQGFGQGGKVIEPQNLFHEMISRG------LKPDEVTYTTLIDVYCKAGEMVN------ 451

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             +FS  N+M      + +    + +  LIDGLCK  +L  A EL   + + GL  NV  
Sbjct: 452 --AFSLHNEMV----QMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCI 505

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN ++ G+C  G +      E    L K +   G+ PD  TY  +I+ +C++G +     
Sbjct: 506 YNSMVNGICKAGNI------EQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHK 559

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +   +L     P  VTF  L+
Sbjct: 560 LLQEMLDRGLQPTVVTFNVLM 580



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 139/315 (44%), Gaps = 28/315 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +F+I F  L +  H      L  +L   GL     + N  ++   ++   S G  +
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLS---RIANNSEGIEM 244

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
             ++      + +  ++  +I  LC   ++ EA  L  ++       DV +Y+T+I+G C
Sbjct: 245 AIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYC 304

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    AL L ++M           +P+  TY++II  LCK       +G S  A    
Sbjct: 305 HLGELKKALKLMDDMQIKG------LKPNRYTYNSIILLLCK-------IGKSFEAEKVL 351

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
              M+      ++    + +  LI G  K+  ++ A + F  +    + P+ +TY  LI+
Sbjct: 352 REMMS-----QKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQ 406

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G    G++ E ++      LF  + S GL PD  TY  LI+ +CK G + + F +   ++
Sbjct: 407 GFGQGGKVIEPQN------LFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMV 460

Query: 387 PSCFTPDAVTFTSLI 401
               TP+ VT+ +LI
Sbjct: 461 QMGMTPNIVTYGALI 475



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 114/284 (40%), Gaps = 32/284 (11%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+   ++I      ++G +S    +L ++L         +  + +  +   S  +E A  
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMA-- 245

Query: 183 FTKLRVF---GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
              ++VF   G   +  +YN +I  LCR G    A  L  +M   +        PD ++Y
Sbjct: 246 ---IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSST------PDVVSY 296

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           ST+IDG C        L          L    + +          N + L+  LCKI K 
Sbjct: 297 STVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTY----------NSIILL--LCKIGKS 344

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A ++ + +    ++P+ V Y  LI G    G      H  T    F  + S  + PD 
Sbjct: 345 FEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLG------HVRTANKWFDEMLSKKISPDY 398

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
            TY  LI  F + G+V     +F  ++     PD VT+T+LI +
Sbjct: 399 ITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDV 442



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 102/245 (41%), Gaps = 18/245 (7%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N +   + K  + +  + L K + + G+ PD  TY  +I+ +C++G +     +L  +L
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                P  VTF  L+   C    + +   L   +   G   D  TYNTL+   C      
Sbjct: 566 DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMN 625

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
               +++ M N     GV   PD+ TY+ +I G CK    A  L  +       + K   
Sbjct: 626 TTTKIYKRMRNQ----GVA--PDSNTYNILIKGHCK----ARNLKEAWFLYKEMIEKG-- 673

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
           Y P V       ++  LI    K  K   ARELF+ +   GL+ +   YN  +     +G
Sbjct: 674 YVPTVT------SYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEG 727

Query: 333 QMDET 337
            ++ T
Sbjct: 728 DVEIT 732



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 59/133 (44%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L          +T   ++KR+   G+ PD  TYNILI   CK   +   + +
Sbjct: 606 PDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFL 665

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++   + P   ++ +LIK    + +  EA  LF ++R  G   D   YN  ++    
Sbjct: 666 YKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYE 725

Query: 208 TGHTIVALNLFEE 220
            G   + LNL +E
Sbjct: 726 EGDVEITLNLCDE 738



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 13/191 (6%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           GDI     ++A  +   ML+ R  +P V +FN+L          +    L   +   G+ 
Sbjct: 552 GDI-----DKAHKLLQEMLD-RGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIV 605

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD  TYN L+   C    ++    +  R+      PD+ T+  LIK  C    + EA  L
Sbjct: 606 PDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFL 665

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           + ++   G    V +YN LI    +      A  LFEEM  G+G        D   Y+  
Sbjct: 666 YKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEM-RGHGLVA-----DGEIYNFF 719

Query: 243 IDGLCKEAGSA 253
           +D +C E G  
Sbjct: 720 VD-MCYEEGDV 729



 Score = 42.4 bits (98), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+  N  +YNI+I  LC  G++ E         L  +++     PD+ +Y+ +I+ +C +
Sbjct: 253 GISWNTTSYNIIIYSLCRLGKVKEAHR------LLMQMDFRSSTPDVVSYSTVIDGYCHL 306

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G +     +   +      P+  T+ S+I +L
Sbjct: 307 GELKKALKLMDDMQIKGLKPNRYTYNSIILLL 338


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 149/317 (47%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++++L   L K       + L + +   G  PD  TY IL++  CK  +V+  + V
Sbjct: 111 PNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEV 170

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L +   P+ VT+ SL+  LC   R+ +A AL   +   GC  +V TY TLI+GLC+
Sbjct: 171 LREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 230

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  +  +M +  G       PD + Y+ +I+GLCK       +     A    +
Sbjct: 231 VGRVKDACAMLADMIDKGG------TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGI 284

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                 +  V            I GLC+ ++L  A  L   +   G  P+V+ Y+ LI G
Sbjct: 285 KPDVVTYSSV------------IYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDG 332

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G++DE       F L++ +   G   D+ TY+ LI+  CK GRV    ++  R++ 
Sbjct: 333 LCKAGKVDEA------FDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVR 386

Query: 388 SCFTPDAVTFTSLIKIL 404
               P  +T+ SLIK L
Sbjct: 387 MGTPPSTMTYNSLIKGL 403



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 156/329 (47%), Gaps = 29/329 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L   L + +     L+L + +   G  P+  TY  LI+  CK+GRV     +
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 240

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++    TPD + +  LI  LC   ++ E+ AL  +    G + DV TY+++I GLCR
Sbjct: 241 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR 300

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN--FLGFSCMASFS 265
           +     A  L   + +        C PD I YST+IDGLCK AG  +  F  +  M    
Sbjct: 301 SNRLDEACRLLLYVKSRG------CPPDVILYSTLIDGLCK-AGKVDEAFDLYEVMTGDG 353

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
               +  Y  L             IDGLCK  ++  A  L   + R G  P+ +TYN LI
Sbjct: 354 CDADVVTYSTL-------------IDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLI 400

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV-SSGFVIFGR 384
           +GLC+   +DE         L + +  +   P   TYNILI+  C++ RV S+    F  
Sbjct: 401 KGLCDLNHLDEA------IELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQE 454

Query: 385 ILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           ++ +   PD +T++ L++ L+ +    ++
Sbjct: 455 MIDNGVIPDHITYSILLEGLKKSKDLHEL 483



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 137/286 (47%), Gaps = 27/286 (9%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V ++  L   L K        ++   +   G  PD   YN+LIN  CK  +V  
Sbjct: 212 RGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDE 271

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +L R +     PD VT++S+I  LC  +R+ EA  L   ++  GC  DV  Y+TLI+
Sbjct: 272 SIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLID 331

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN--FLGFSCM 261
           GLC+ G    A +L+E M  G+G     C+ D +TYST+IDGLCK AG  +   L  + M
Sbjct: 332 GLCKAGKVDEAFDLYEVM-TGDG-----CDADVVTYSTLIDGLCK-AGRVDEAHLLLARM 384

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
                      Y  L++             GLC ++ L  A EL + + R+   P+ VTY
Sbjct: 385 VRMGTPPSTMTYNSLIK-------------GLCDLNHLDEAIELVEEMERSNCAPSAVTY 431

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           NILI G+C   ++D           F+ +   G+ PD  TY+IL+ 
Sbjct: 432 NILIHGMCRMERVD-----SAALDYFQEMIDNGVIPDHITYSILLE 472



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 163/335 (48%), Gaps = 27/335 (8%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P+ A  +F++M ++  S P + ++N L   L +T   +  ++LF+ + L     D  ++N
Sbjct: 26  PDRAQELFEHMKSVECS-PSMVTYNTLLDGLFRTGKLERAMALFQEM-LDRRSHDVISFN 83

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           IL+   C+ G++        ++   C +P+ +T++ LI  LC  +R+ +A  L   ++  
Sbjct: 84  ILVTGLCRAGKIETALEFFRKMDDRC-SPNVITYSVLIDGLCKANRVSQAVELLESMKAR 142

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           GC  DV TY  L++GLC+      A  +  EM +        C P+ +TY++++ GLC+ 
Sbjct: 143 GCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG------CVPNLVTYNSLLHGLCRA 196

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              ++ L          +  M        V    + +  LIDGLCK+ ++K A  +   +
Sbjct: 197 RRVSDALAL--------MRDMTCRGCTPNV----VTYGTLIDGLCKVGRVKDACAMLADM 244

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G  P+++ YN+LI GLC   Q+DE+        L +R  S G+ PD+ TY+ +I   
Sbjct: 245 IDKGGTPDLMIYNMLINGLCKADQVDES------IALLRRAVSGGIKPDVVTYSSVIYGL 298

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           C+  R+     +   +      PD + +++LI  L
Sbjct: 299 CRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGL 333



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 146/318 (45%), Gaps = 32/318 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++N L   L K    D    LF+ +      P   TYN L++   + G++     
Sbjct: 7   EPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMA 66

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L    + D ++F  L+  LC   +I  A   F K+    C  +V TY+ LI+GLC
Sbjct: 67  LFQEMLDR-RSHDVISFNILVTGLCRAGKIETALEFFRKMD-DRCSPNVITYSVLIDGLC 124

Query: 207 RTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           +      A+ L E M A G       C PD ITY+ ++DGLCKE+  A        A++ 
Sbjct: 125 KANRVSQAVELLESMKARG-------CSPDVITYTILVDGLCKESKVA--------AAWE 169

Query: 266 ALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            L +M  A   P +      + +  L+ GLC+  ++  A  L + +   G  PNVVTY  
Sbjct: 170 VLREMLDAGCVPNL------VTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGT 223

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GLC  G++ +         +   +   G  PDL  YN+LIN  CK  +V     +  
Sbjct: 224 LIDGLCKVGRVKDA------CAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLR 277

Query: 384 RILPSCFTPDAVTFTSLI 401
           R +     PD VT++S+I
Sbjct: 278 RAVSGGIKPDVVTYSSVI 295



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 147/322 (45%), Gaps = 26/322 (8%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P V ++ IL   L K         + + +   G  P+  TYN L++  C+  R
Sbjct: 139 MKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARR 198

Query: 141 VSHGFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           VS    ++  +  R C TP+ VT+ +LI  LC   R+ +A A+   +   G   D+  YN
Sbjct: 199 VSDALALMRDMTCRGC-TPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYN 257

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LINGLC+      ++ L     +G        +PD +TYS++I GLC+    +N L  +
Sbjct: 258 MLINGLCKADQVDESIALLRRAVSGG------IKPDVVTYSSVIYGLCR----SNRLDEA 307

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
           C        ++  Y          + +  LIDGLCK  K+  A +L++ +   G   +VV
Sbjct: 308 C--------RLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVV 359

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY+ LI GLC  G++DE        LL  R+   G  P   TYN LI   C +  +    
Sbjct: 360 TYSTLIDGLCKAGRVDEA------HLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAI 413

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +   +  S   P AVT+  LI
Sbjct: 414 ELVEEMERSNCAPSAVTYNILI 435



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 132/285 (46%), Gaps = 26/285 (9%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  P+  TYN LI+  CK         +   +     +P  VT+ +L+  L    ++  A
Sbjct: 5   GCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERA 64

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
            ALF ++ +     DV ++N L+ GLCR G    AL  F +M +        C P+ ITY
Sbjct: 65  MALFQEM-LDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDR-------CSPNVITY 116

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           S +IDGLCK    AN +  S         K     P V      + +  L+DGLCK SK+
Sbjct: 117 SVLIDGLCK----ANRV--SQAVELLESMKARGCSPDV------ITYTILVDGLCKESKV 164

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A E+ + +  AG +PN+VTYN L+ GLC        +       L + +   G  P++
Sbjct: 165 AAAWEVLREMLDAGCVPNLVTYNSLLHGLC------RARRVSDALALMRDMTCRGCTPNV 218

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            TY  LI+  CK+GRV     +   ++    TPD + +  LI  L
Sbjct: 219 VTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGL 263



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 33/240 (13%)

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +R  GCE +V TYN+LI+GLC+      A  LFE M +      V C P  +TY+T++DG
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKS------VECSPSMVTYNTLLDG 54

Query: 246 LCK---------------EAGSANFLGFSCMAS----FSALNKMAFYFPLVRVQCL--CL 284
           L +               +  S + + F+ + +       +     +F  +  +C    +
Sbjct: 55  LFRTGKLERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVI 114

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  LIDGLCK +++  A EL +S+   G  P+V+TY IL+ GLC + ++         +
Sbjct: 115 TYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKV------AAAW 168

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            + + +   G  P+L TYN L++  C+  RVS    +   +     TP+ VT+ +LI  L
Sbjct: 169 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGL 228


>gi|225189441|emb|CAR70004.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 278

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 135/269 (50%), Gaps = 54/269 (20%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           I  I  ++A+ +F  M+  RP  P +  F+  F  +A+TK ++ VL   K+L L G+  +
Sbjct: 64  IVDIKKDDAIALFQEMIRSRP-LPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHN 122

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            YT NI+INCFC+  +    + VLG++++  + PD  TF +LIK L  E ++ EA  L  
Sbjct: 123 IYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVD 182

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           ++   GC+ DV TYN+++NG+CR+G T +AL+L  +M   N       + D  TYSTIID
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------VKADVFTYSTIID 236

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
            LC++                                 C++                A  
Sbjct: 237 SLCRDG--------------------------------CID---------------AAIS 249

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
           LF+ +   G+  +VVTYN L+RGLC  G+
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGK 278



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  LFQ + R+  +P++V ++     +        TK +  V    K+L   G+  ++YT
Sbjct: 72  AIALFQEMIRSRPLPSLVDFSRFFSAIA------RTKQFNLVLDFCKQLELNGIAHNIYT 125

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            NI+INCFC+  +    + + G+++   + PD  TF +LIK
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIK 166



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  LI GL    K+  A  L   +   G  P+VVTYN ++ G+C  G             
Sbjct: 161 FNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDT------SLALD 214

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           L +++    +  D++TY+ +I+  C+ G + +   +F  +         VT+ SL++
Sbjct: 215 LLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 271



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +I+  C+  K   A  +   + + G  P+  T+N LI+GL  +G++ E        +L  
Sbjct: 129 MINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA------VVLVD 182

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           R+   G  PD+ TYN ++N  C+ G  S    +  ++       D  T++++I  L
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSL 238


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 148/318 (46%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP + +FN +   L K    +    +F  +   GL PD  +YN L++ +CK G +     
Sbjct: 222 RPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALA 281

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   + +    PD VTFTSLI  +C    +  A AL  ++R  G  ++ FT+  LI+G C
Sbjct: 282 VFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFC 341

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G    AL   +EM     +  VVC      Y+ +I+G CK            +     
Sbjct: 342 RNGFLDDALLAMKEMRECRIQPSVVC------YNVLINGYCK------------LGRMDE 383

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             ++        ++   + +  ++ G CKI     A EL + + + G++P+ +TY+ LIR
Sbjct: 384 ARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIR 443

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC + ++ +         LF+++   GL PD +TY  LI+  CK G V     +   ++
Sbjct: 444 GLCEERRLGDACE------LFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMI 497

Query: 387 PSCFTPDAVTFTSLIKIL 404
                PD VT++ LI  L
Sbjct: 498 KKGVLPDVVTYSVLIDGL 515



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 144/309 (46%), Gaps = 36/309 (11%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTSLIKDLCAESRIME 178
           G+ P+ YTYNIL+   C  G+      V+G  +R     P+ VT+ +L+   C    +  
Sbjct: 149 GVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDA 208

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A  L   +R  G    + T+NT++NGLC+ G    A  +F+EMA           PD ++
Sbjct: 209 AERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREG------LTPDGVS 262

Query: 239 YSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLN------------ 285
           Y+T++ G CK       L  F+ MA    +  +  +  L+   C   N            
Sbjct: 263 YNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMR 322

Query: 286 ----------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                     F  LIDG C+   L  A    + +    + P+VV YN+LI G C  G+MD
Sbjct: 323 ERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMD 382

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           E +       L   + + G+ PD+ TY+ +++ +CKIG   S F +  ++L     PDA+
Sbjct: 383 EARE------LIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAI 436

Query: 396 TFTSLIKIL 404
           T++SLI+ L
Sbjct: 437 TYSSLIRGL 445



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 156/331 (47%), Gaps = 24/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL V    +      P V ++N L     +    D    L   +   G+ P   T+N 
Sbjct: 171 EEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNT 230

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++N  CK GR+     +   + R   TPD V++ +L+   C    + EA A+F ++   G
Sbjct: 231 VVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKG 290

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV T+ +LI+ +CR G+   A+ L  +M     E G+    +  T++ +IDG C+  
Sbjct: 291 VVPDVVTFTSLIHAMCRAGNLERAVALVGQMR----ERGL--RMNEFTFTALIDGFCRNG 344

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
               FL  + +    A+ +M       R+Q   + +  LI+G CK+ ++  AREL   + 
Sbjct: 345 ----FLDDALL----AMKEMRE----CRIQPSVVCYNVLINGYCKLGRMDEARELIHEME 392

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+VVTY+ ++ G C  G  D      + F L +++   G+ PD  TY+ LI   C
Sbjct: 393 AKGMKPDVVTYSTILSGYCKIGDTD------SAFELNRKMLKKGVVPDAITYSSLIRGLC 446

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +  R+     +F ++L     PD  T+T+LI
Sbjct: 447 EERRLGDACELFEKMLQLGLQPDEFTYTTLI 477



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 152/331 (45%), Gaps = 21/331 (6%)

Query: 80  MLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK 137
           M  MR  R  P V  +N+L     K    D    L   +   G+ PD  TY+ +++ +CK
Sbjct: 353 MKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCK 412

Query: 138 MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFT 197
           +G     F +  ++L+    PDA+T++SLI+ LC E R+ +A  LF K+   G + D FT
Sbjct: 413 IGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFT 472

Query: 198 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANF 255
           Y TLI+G C+ G+   AL+L +EM     + GV+  PD +TYS +IDGL K A    A  
Sbjct: 473 YTTLIDGHCKEGNVQKALSLHDEMI----KKGVL--PDVVTYSVLIDGLSKSARTKEAQR 526

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNF---LCLIDGLCKISKLKIARELFQSLPRA 312
           L F         + +  Y  L+   C    F   + L+ G      +  A +++QS+   
Sbjct: 527 LLFKLYYEDPVPDNIK-YEALMHC-CRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDR 584

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
               +   Y++LI G C  G + +   +       K+L   G  P+  +   L+    + 
Sbjct: 585 HWKLDGSVYSVLIHGHCRGGNIMKALSFH------KQLLRCGFSPNSTSTISLVRGLFEE 638

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           G       +   +L  C   DA T  +LI +
Sbjct: 639 GMTVEADNVIQELLNCCSLADAETSKALIDL 669



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 24/255 (9%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           + P  + + +++  L +++ +  A  L   +   G   +V+TYN L+  LC  G    AL
Sbjct: 116 YAPSLLAYNAVLLAL-SDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEAL 174

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            +  +   G G     C P+ +TY+T++   C+ AG  +           A  ++     
Sbjct: 175 GVVGDDMRGAG-----CAPNVVTYNTLVAAFCR-AGEVD-----------AAERLVGVMR 217

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
              V+   + F  +++GLCK  +++ AR++F  + R GL P+ V+YN L+ G C  G + 
Sbjct: 218 EGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLH 277

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           E         +F  +   G+ PD+ T+  LI+  C+ G +     + G++       +  
Sbjct: 278 EA------LAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEF 331

Query: 396 TFTSLIKILEINSFF 410
           TFT+LI     N F 
Sbjct: 332 TFTALIDGFCRNGFL 346


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 159/335 (47%), Gaps = 26/335 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F   L M+ S P   +FNIL   L +    D    +FK +   G  PD  TYN 
Sbjct: 160 HEAIYLFKEYLVMQ-SPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNT 218

Query: 131 LINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           LIN  CK   V  G  +   I  RS  +PD VT+TS+I   C   ++ EA+ LF ++   
Sbjct: 219 LINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRS 278

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G + +V T+N LI+G  + G+   A  ++ +MA  +      C  D +T++++IDG C+ 
Sbjct: 279 GIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFD------CSADVVTFTSLIDGYCR- 331

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
           AG  N         F  + K     P V        +  LI+ LCK ++L  AR+    +
Sbjct: 332 AGQVNH-----GLKFWNVMKTRNVSPTV------YTYAVLINALCKENRLNEARDFLGQI 380

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             + ++P    YN +I G C  G +DE        ++ K +      PD  T+ ILI   
Sbjct: 381 KNSSIIPKPFMYNPVIDGFCKAGNVDEGN------VILKEMEEKRCDPDKVTFTILIIGH 434

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           C  GR+     IF R+L +   PD +T  SLI  L
Sbjct: 435 CVKGRMFEAINIFNRMLATRCAPDNITVNSLISCL 469



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 154/364 (42%), Gaps = 42/364 (11%)

Query: 61  GEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG 120
           G  D+ +I       VFDYM       P       L   +A+   +D V  L   +    
Sbjct: 87  GHHDLVNI-------VFDYM-GSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKE 138

Query: 121 LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180
           +  + + YN L++   K  +V     +    L     PD  TF  LI+ LC    +  A 
Sbjct: 139 VRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAF 198

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
            +F  +  FGC  DV TYNTLINGLC+         LF+E+ + +      C PD +TY+
Sbjct: 199 EVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSD-----CSPDIVTYT 253

Query: 241 TIIDGLCKEAG----------------SANFLGFSCMAS-FSALNKM----AFYFPLVRV 279
           +II G CK                     N + F+ +   F  +  +    A Y  +   
Sbjct: 254 SIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYF 313

Query: 280 QCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            C    + F  LIDG C+  ++    + +  +    + P V TY +LI  LC + +++E 
Sbjct: 314 DCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEA 373

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           + +        ++ ++ + P  + YN +I+ FCK G V  G VI   +      PD VTF
Sbjct: 374 RDF------LGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTF 427

Query: 398 TSLI 401
           T LI
Sbjct: 428 TILI 431



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 63/133 (47%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           F  ++  R   P V ++ +L   L K    +       ++  + + P  + YN +I+ FC
Sbjct: 341 FWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFC 400

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           K G V  G V+L  +      PD VTFT LI   C + R+ EA  +F ++    C  D  
Sbjct: 401 KAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNI 460

Query: 197 TYNTLINGLCRTG 209
           T N+LI+ L + G
Sbjct: 461 TVNSLISCLLKAG 473


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 155/356 (43%), Gaps = 55/356 (15%)

Query: 80   MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
            ++ ++   P V S++ +     +    D V  L + +   GL P+ Y Y  +I   C++ 
Sbjct: 714  LMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRIC 773

Query: 140  RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            +++        ++R    PD V +T+LI   C    I  A+  F ++       DV TY 
Sbjct: 774  KLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYT 833

Query: 200  TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
             +I+G C+ G  + A  LF EM      F    EPD++T++ +I+G CK     +     
Sbjct: 834  AIISGFCQIGDMVEAGKLFHEM------FCKGLEPDSVTFTELINGYCKAGHMKD----- 882

Query: 260  CMASFSALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
               +F   N M        +Q  C    + +  LIDGLCK   L  A EL   + + GL 
Sbjct: 883  ---AFRVHNHM--------IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 931

Query: 316  PNVVTYNILIRGLCNDGQMDE----------------TKHYETVF-------------LL 346
            PN+ TYN ++ GLC  G ++E                T  Y T+               +
Sbjct: 932  PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 991

Query: 347  FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             K +   GL P + T+N+L+N FC  G +  G  +   +L     P+A TF SL+K
Sbjct: 992  LKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVK 1047



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 34/317 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V S+NI+   + +         L   + L G  PD  +Y+ ++N +C+ G +   + ++ 
Sbjct: 689 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 748

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            + R    P++  + S+I  LC   ++ EA   F+++   G   D   Y TLI+G C+ G
Sbjct: 749 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 808

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-----EAGSANFLGFSCMASF 264
               A   F EM + +        PD +TY+ II G C+     EAG   F    C    
Sbjct: 809 DIRAASKFFYEMHSRD------ITPDVLTYTAIISGFCQIGDMVEAGKL-FHEMFCKG-- 859

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
                         ++   + F  LI+G CK   +K A  +   + +AG  PNVVTY  L
Sbjct: 860 --------------LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 905

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I GLC +G +D          L   +   GL P+++TYN ++N  CK G +     + G 
Sbjct: 906 IDGLCKEGDLDSANE------LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGE 959

Query: 385 ILPSCFTPDAVTFTSLI 401
              +    D VT+T+L+
Sbjct: 960 FEAAGLNADTVTYTTLM 976



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 140/342 (40%), Gaps = 58/342 (16%)

Query: 113  FKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
            F  +   G+ PD   Y  LI+ FCK G +         +     TPD +T+T++I   C 
Sbjct: 782  FSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQ 841

Query: 173  ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
               ++EA  LF ++   G E D  T+  LING C+ GH   A  +   M          C
Sbjct: 842  IGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG------C 895

Query: 233  EPDAITYSTIIDGLCKEAG--SANFL---------------------GFSCMASFSALNK 269
             P+ +TY+T+IDGLCKE    SAN L                     G     +     K
Sbjct: 896  SPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 955

Query: 270  MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
            +   F    +    + +  L+D  CK  ++  A+E+ + +   GL P +VT+N+L+ G C
Sbjct: 956  LVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFC 1015

Query: 330  NDGQMDE-----------------------TKHY------ETVFLLFKRLNSTGLFPDLY 360
              G +++                        K Y      +    ++K + S G+ PD  
Sbjct: 1016 LHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGK 1075

Query: 361  TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            TY  L+   CK   +   + +F  +    F+    T++ LIK
Sbjct: 1076 TYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIK 1117



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 145/349 (41%), Gaps = 37/349 (10%)

Query: 73   ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
            A   F Y ++ R   P V ++  +     +         LF  +   GL PD  T+  LI
Sbjct: 812  AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELI 871

Query: 133  NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
            N +CK G +   F V   ++++  +P+ VT+T+LI  LC E  +  A  L  ++   G +
Sbjct: 872  NGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 931

Query: 193  LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-CEPDAITYSTIIDGLCK--E 249
             ++FTYN+++NGLC++G+   A+ L        GEF       D +TY+T++D  CK  E
Sbjct: 932  PNIFTYNSIVNGLCKSGNIEEAVKLV-------GEFEAAGLNADTVTYTTLMDAYCKSGE 984

Query: 250  AGSANFL---------------------GFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
               A  +                     GF          K+  +     +      F  
Sbjct: 985  MDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNS 1044

Query: 289  LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
            L+   C  + LK A  +++ +   G+ P+  TY  L++G C    M E       + LF+
Sbjct: 1045 LVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEA------WFLFQ 1098

Query: 349  RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
             +   G    + TY++LI  F K  +      +F ++       D   F
Sbjct: 1099 EMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 1147



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 123/292 (42%), Gaps = 33/292 (11%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
             +A  V ++M+    S P V ++  L   L K    D+   L   +   GL P+ +TYN 
Sbjct: 881  KDAFRVHNHMIQAGCS-PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 939

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            ++N  CK G +     ++G    +    D VT+T+L+   C    + +A  +  ++   G
Sbjct: 940  IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 999

Query: 191  CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--- 247
             +  + T+N L+NG C  G     L   E++ N     G+   P+A T+++++   C   
Sbjct: 1000 LQPTIVTFNVLMNGFCLHG----MLEDGEKLLNWMLAKGIA--PNATTFNSLVKQYCIRN 1053

Query: 248  -KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
              +A +A +    C        K                +  L+ G CK   +K A  LF
Sbjct: 1054 NLKAATAIYKDM-CSRGVGPDGK---------------TYENLVKGHCKARNMKEAWFLF 1097

Query: 307  QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
            Q +   G   +V TY++LI+G     +  E +       +F ++   GL  D
Sbjct: 1098 QEMKGKGFSVSVSTYSVLIKGFLKRKKFLEARE------VFDQMRREGLAAD 1143



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +F+  P  G+  NV +YNI+I  +C  G++ E  H     LL   L   G  PD+ +Y+ 
Sbjct: 676 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHH----LLLLMELK--GYTPDVISYST 729

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++N +C+ G +   + +   +      P++  + S+I +L
Sbjct: 730 VVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLL 769


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 173/370 (46%), Gaps = 47/370 (12%)

Query: 79  YMLNMRPSRPPVTSFNILFGCL-----AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           ++ N     P V S+N +   L     +  + YD    +F+ +   G+ P+ YTYN++I 
Sbjct: 156 HLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIR 215

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
                G +  G   + ++ +   +P+ VT+ +LI   C + ++ EA AL   + V G   
Sbjct: 216 GVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAA 275

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-- 251
           ++ +YN++INGLC  G       L EEM  G G       PD +TY+T+++G CKE    
Sbjct: 276 NLISYNSVINGLCGKGRMSEVGELVEEM-RGKG-----LVPDEVTYNTLVNGFCKEGNLH 329

Query: 252 --------------SANFLGFS----CMASFSALNKMAFYFPLVRVQCLCLN---FLCLI 290
                         S N + ++    CM     L++    F  +RV+ L  N   +  LI
Sbjct: 330 QGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLI 389

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           DG C+   +  A ++   +  +G  P+VVTYN L+ G C  G++ E         + + +
Sbjct: 390 DGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEA------VGILRGM 443

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KI 403
              GL PD+ +Y+ +I  FC+   +   F +   ++     PD VT++SLI       K+
Sbjct: 444 VERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKL 503

Query: 404 LEINSFFRQV 413
           +E    FR++
Sbjct: 504 VEAFDLFREM 513



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 138/322 (42%), Gaps = 59/322 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L  C+ K  +    + +F ++ + GL P+  TY  LI+ FC+ G ++  + V
Sbjct: 345 PNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKV 404

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++ S F+P  VT+ +L+   C   R+ EA  +   +   G   DV +Y+T+I G CR
Sbjct: 405 LSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCR 464

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A  + EEM     E GV+  PD +TYS++I GLC +                  
Sbjct: 465 ERELGKAFQMKEEMV----EKGVL--PDTVTYSSLIQGLCLQ------------------ 500

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                         KL  A +LF+ + R GL P+ VTY  LI  
Sbjct: 501 -----------------------------QKLVEAFDLFREMMRRGLPPDEVTYTSLINA 531

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C DG++ +         L   +   G  PD  TY++LIN   K  R      +  ++  
Sbjct: 532 YCVDGELSKA------LRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFY 585

Query: 388 SCFTPDAVTFTSLIKILEINSF 409
               PD VT+ +LI+    N F
Sbjct: 586 EESVPDDVTYNTLIENCSNNEF 607



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 8/136 (5%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  ++  L ++  +  A  L     R G  P V++YN ++  L      +  + Y+    
Sbjct: 135 FDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNH-RDYDDAER 193

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI---- 401
           +F+ +   G+ P++YTYN++I      G +  G     ++     +P+ VT+ +LI    
Sbjct: 194 VFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASC 253

Query: 402 ---KILEINSFFRQVA 414
              K+ E  +  R +A
Sbjct: 254 KKKKVKEAMALLRAMA 269



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 18/168 (10%)

Query: 72  EALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           EA  +F  M  MR   PP   ++  L             L L   +   G  PD  TY++
Sbjct: 505 EAFDLFREM--MRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSV 562

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI---------------KDLCAESR 175
           LIN   K  R      +L ++      PD VT+ +LI               K  C +  
Sbjct: 563 LINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGL 622

Query: 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           + EA  +F  +     + +   YN +I+G  R G+   A NL+ E+ +
Sbjct: 623 MNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEH 670


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 157/332 (47%), Gaps = 25/332 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A+ + D M N R  +P + ++N +   L K + +D    +F+ ++   + PD  ++NI
Sbjct: 209 DAAIALVDSMAN-RGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNI 267

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  FC++G V         +     TPD V+F+ LI        +  A A   +++  G
Sbjct: 268 LIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLG 327

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D   Y  +I G CR G    AL + +EM       G  C PD +TY+T+++GLCK+ 
Sbjct: 328 LVPDGVIYTMVIGGFCRAGSMSEALRVRDEMV------GFGCLPDVVTYNTLLNGLCKQ- 380

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                     + +   LN+M           LC  F  LI G C+    + A +LF +L 
Sbjct: 381 -------HRLLDAEKLLNEME---ERGVTPDLC-TFTTLIHGYCRQGNFENALQLFDTLL 429

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R  L P+VVTYN LI G+C  G + +         L+  +++  + P+  TY+ILI+  C
Sbjct: 430 RQRLRPDVVTYNSLIDGMCRKGDLAKANE------LWDDMHAREILPNHITYSILIDSHC 483

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + G+V   F     ++     P+  T+ S+IK
Sbjct: 484 EKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIK 515



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 144/314 (45%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V SFNIL G   +       +  +K +    + PD  +++ LI  F + G + H    
Sbjct: 260 PDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAY 319

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      PD V +T +I   C    + EA  +  ++  FGC  DV TYNTL+NGLC+
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCK 379

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
               + A  L  EM     E GV   PD  T++T+I G C++    N L       F  L
Sbjct: 380 QHRLLDAEKLLNEME----ERGVT--PDLCTFTTLIHGYCRQGNFENALQL-----FDTL 428

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +        R++   + +  LIDG+C+   L  A EL+  +    ++PN +TY+ILI  
Sbjct: 429 LRQ-------RLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDS 481

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  GQ+      E  F     +   G  P++ TYN +I  +C+ G V  G     ++  
Sbjct: 482 HCEKGQV------EDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQ 535

Query: 388 SCFTPDAVTFTSLI 401
               PD +TF +LI
Sbjct: 536 DNVFPDLITFNTLI 549



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 149/316 (47%), Gaps = 28/316 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V SF+ L G  ++    D   +  + +   GL PD   Y ++I  FC+ G +S    V
Sbjct: 295 PDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRV 354

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++     PD VT+ +L+  LC + R+++A  L  ++   G   D+ T+ TLI+G CR
Sbjct: 355 RDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCR 414

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFS 265
            G+   AL LF+ +            PD +TY+++IDG+C++     AN L     A   
Sbjct: 415 QGNFENALQLFDTLLRQR------LRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREI 468

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             N + +                LID  C+  +++ A      + + G +PN+ TYN +I
Sbjct: 469 LPNHITYSI--------------LIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSII 514

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           +G C  G + + + +       +++    +FPDL T+N LI+ + K   +   F +F  +
Sbjct: 515 KGYCRSGNVKKGQQF------LQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIM 568

Query: 386 LPSCFTPDAVTFTSLI 401
                 PDAVT+  +I
Sbjct: 569 EKEMVRPDAVTYNMII 584



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 7/178 (3%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +FD +L  R  RP V ++N L   + +         L+  ++   + P+  TY+ILI
Sbjct: 421 ALQLFDTLLRQR-LRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILI 479

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  C+ G+V   F  L  +++    P+  T+ S+IK  C    + +      K+R     
Sbjct: 480 DSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVF 539

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            D+ T+NTLI+G  +  +   A N+F  M         +  PDA+TY+ II+G  ++ 
Sbjct: 540 PDLITFNTLIHGYIKEENMHGAFNVFNIMEK------EMVRPDAVTYNMIINGFSEQG 591



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A    D M+  + + P + ++N +     ++ +        +++    +FPD  T+N L
Sbjct: 490 DAFGFLDEMVK-KGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTL 548

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ + K   +   F V   + +    PDAVT+  +I     +  + +A  +F  +   G 
Sbjct: 549 IHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGI 608

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           E D +TY +LING    G++  A  L +EM
Sbjct: 609 EPDRYTYMSLINGHVTAGNSKQAFQLHDEM 638



 Score = 45.4 bits (106), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 34/73 (46%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   ++N++    ++  +      +FK +  +G+ PDRYTY  LIN     G     F 
Sbjct: 574 RPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQ 633

Query: 147 VLGRILRSCFTPD 159
           +   ++   F PD
Sbjct: 634 LHDEMIHRGFAPD 646



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 6/117 (5%)

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L+  L +     +A+E ++ +  +    N  T NI++   C      +T  ++    + 
Sbjct: 127 ALLAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYC------KTLEFDGADTVI 180

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             +    +FPD+ T+N+LI+   + G V +   +   +      P  VT+ S++K L
Sbjct: 181 SEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGL 237


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 163/335 (48%), Gaps = 28/335 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYTY 128
           +A  VFD +L  R     +   N     +A+      V S + R+   G   + P+  TY
Sbjct: 37  DARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTY 94

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKLR 187
            ILI   C  GR+  GF  LG +++  F  DA+ FT L+K LCA+ R  +A  +   ++ 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             GC  +VF+YN L+ GLC    +  AL L + M +  G+    C PD ++Y+T+I+G  
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGFF 210

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           KE             ++   ++M     L  V    + +  +I  LCK   +  A E+  
Sbjct: 211 KEG--------DLDKAYGTYHEMLDRGILPNV----VTYNSIIAALCKAQAMDKAMEVLT 258

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           S+ + G+MPN  TYN ++ G C+ GQ  E   +       K+++S G+ PD+ TYN L++
Sbjct: 259 SMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF------LKKMHSDGVEPDVVTYNSLMD 312

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             CK GR +    +F  +      P+  T+ +L++
Sbjct: 313 YLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 157/346 (45%), Gaps = 31/346 (8%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
            G  +S  P EA+     M +     P V ++N L   L K         +F  +   GL
Sbjct: 277 HGYCSSGQPKEAIGFLKKM-HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGL 335

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+  TY  L+  +   G +     +L  ++R+   P+   F+ LI     + ++ +A  
Sbjct: 336 KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAML 395

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +F+K+R  G   D  TY T+I  LC++G    A+  FE+M +          P  I Y++
Sbjct: 396 VFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDER------LSPGNIVYNS 449

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISK 298
           +I  LC                F   +K       +  + +CL+   F  +ID  CK  +
Sbjct: 450 LIHSLC---------------IFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGR 494

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           +  + +LF  + R G+ PN++TY+ LI G C  G+MDE         L   + S G+ PD
Sbjct: 495 VIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATK------LLASMVSVGMKPD 548

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             TYN LIN +CKI R+    V+F  +  S  +PD +T+  +++ L
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGL 594



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 147/341 (43%), Gaps = 47/341 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P    F+IL    AK    D  + +F ++   GL PD  TY  +I   CK GRV     
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              +++    +P  + + SLI  LC   +  +A  L  ++   G  LD   +N++I+  C
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G  I +  LF+ M       GV  +P+ ITYST+IDG C                   
Sbjct: 491 KEGRVIESEKLFDLMV----RIGV--KPNIITYSTLIDGYC------------LAGKMDE 532

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             K+      V ++  C+ +  LI+G CKIS+++ A  LF+ +  +G+ P+++TYNI+++
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 327 GL----------------CNDGQMDETKHY-------------ETVFLLFKRLNSTGLFP 357
           GL                   G   E   Y             +    +F+ L  T L  
Sbjct: 593 GLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
           +  T+NI+I    K+GR      +F  +  +   PD  T++
Sbjct: 653 ETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYS 693



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 143/319 (44%), Gaps = 29/319 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD M   R  +P +T++  L    A       +  L   +   G+ P+ Y ++IL
Sbjct: 322 EARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  + K G+V    +V  ++ +    PD VT+ ++I  LC   R+ +A   F ++     
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL 440

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
                 YN+LI+ LC       A  L  EM +       +C  D I +++IID  CKE  
Sbjct: 441 SPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG-----IC-LDTIFFNSIIDSHCKEG- 493

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                          +     +  +VR  V+   + +  LIDG C   K+  A +L  S+
Sbjct: 494 -------------RVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASM 540

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G+ P+ VTYN LI G C   +M      E   +LF+ + S+G+ PD+ TYNI++   
Sbjct: 541 VSVGMKPDCVTYNTLINGYCKISRM------EDALVLFREMESSGVSPDIITYNIILQGL 594

Query: 370 CKIGRVSSGFVIFGRILPS 388
            +  R ++   ++  I  S
Sbjct: 595 FQTRRTAAAKELYVGITES 613



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 149/379 (39%), Gaps = 63/379 (16%)

Query: 80  MLNMRPSR-----PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           +L M P       P V S+  +     K    D     +  +   G+ P+  TYN +I  
Sbjct: 184 LLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAA 243

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            CK   +     VL  ++++   P+  T+ S++   C+  +  EA     K+   G E D
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           V TYN+L++ LC+ G    A  +F+ M           +P+  TY T++ G   +     
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRG------LKPEITTYGTLLQGYATKGALVE 357

Query: 255 FLG----------------FSCM----ASFSALNKMAFYFPLVRVQCL---CLNFLCLID 291
             G                FS +    A    +++    F  +R Q L    + +  +I 
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH-----------Y 340
            LCK  +++ A   F+ +    L P  + YN LI  LC   + D+ K             
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 341 ETVFL------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           +T+F                   LF  +   G+ P++ TY+ LI+ +C  G++     + 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLL 537

Query: 383 GRILPSCFTPDAVTFTSLI 401
             ++     PD VT+ +LI
Sbjct: 538 ASMVSVGMKPDCVTYNTLI 556



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 135/304 (44%), Gaps = 29/304 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+  F+ M++ R S P    +N L   L     +D    L   +   G+  D   +N +
Sbjct: 427 DAMRYFEQMIDERLS-PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK GRV     +   ++R    P+ +T+++LI   C   ++ EA  L   +   G 
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CKE 249
           + D  TYNTLING C+      AL LF EM +     GV   PD ITY+ I+ GL   + 
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESS----GV--SPDIITYNIILQGLFQTRR 599

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
             +A  L      S + L    +                ++ GLCK +    A  +FQ+L
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNI--------------ILHGLCKNNLTDEALRMFQNL 645

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
               L     T+NI+I  L   G+ DE K       LF  L++ GL PD+ TY+++    
Sbjct: 646 CLTDLQLETRTFNIMIGALLKVGRNDEAKD------LFAALSANGLVPDVRTYSLMAENL 699

Query: 370 CKIG 373
            + G
Sbjct: 700 IEQG 703


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 159/337 (47%), Gaps = 28/337 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++ + +F+  +  R   P V SFN++   + +       L L +R+N  G  PD  T+NI
Sbjct: 63  HDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 122

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           L++  C+   VS G  VL R+ R     P+ VTFTS+I   C   ++ +A A++  +   
Sbjct: 123 LVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 182

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +  TYN LING  + G    A+ ++++M        + C PD +T+S++IDG C+ 
Sbjct: 183 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR------LRCPPDVVTFSSLIDGYCRC 236

Query: 250 AGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
               + L  +S MA               R+Q     F  +I  LCK ++   A  L   
Sbjct: 237 GQLDDALRIWSDMAQH-------------RIQPNVYTFSIIIHSLCKQNRSDEAIGLLNE 283

Query: 309 LP-RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           L  R  + P    YN +I  LC  G++DE        L+ K +   G  PD YTY ILI 
Sbjct: 284 LNLRPDIAPQAFIYNPVIDVLCKCGKVDEAN------LIRKGMEEKGCRPDKYTYTILII 337

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +C   R+S   + F  ++ +  +PD++T    I  L
Sbjct: 338 GYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCL 374



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 120/248 (48%), Gaps = 26/248 (10%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAA-LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA 214
           ++PDA  F S +   C  + +++A+A L +K   FGC ++ + YN L++ L   G     
Sbjct: 7   YSPDA-RFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDV 65

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
           + LFE           V  PD  +++ +I G+C+       L          +N+     
Sbjct: 66  VALFERWIQDR-----VYSPDVWSFNVVIKGVCRVGQVQKALEL-----VERMNEFGCSP 115

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL-MPNVVTYNILIRGLCNDGQ 333
             V           L+DGLC+ +++    E+ + L R G+ MPNVVT+  +I G C  G+
Sbjct: 116 DTV-------THNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGK 168

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           +      E    ++  + ++G+ P+  TYN+LIN + K+G + S   ++ ++      PD
Sbjct: 169 L------EDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPD 222

Query: 394 AVTFTSLI 401
            VTF+SLI
Sbjct: 223 VVTFSSLI 230



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 112/254 (44%), Gaps = 21/254 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F  +     K    +  ++++  +  +G+ P+  TYN+LIN + K+G +     V
Sbjct: 151 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 210

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++ R    PD VTF+SLI   C   ++ +A  +++ +     + +V+T++ +I+ LC+
Sbjct: 211 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 270

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
              +  A+ L  E+ N   +      P A  Y+ +ID LCK  +   AN +         
Sbjct: 271 QNRSDEAIGLLNEL-NLRPDIA----PQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGC 325

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             +K  +                LI G C  S++  A   F  +  AG  P+ +T N  I
Sbjct: 326 RPDKYTYTI--------------LIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFI 371

Query: 326 RGLCNDGQMDETKH 339
             L   G  +E  H
Sbjct: 372 SCLLKAGMPNEVDH 385


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 151/329 (45%), Gaps = 25/329 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD M + R  R  V SFN +   + +    D   +L +R++  G+ PD YTY  LI
Sbjct: 259 AQNVFDEMQS-RGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALI 317

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              C++GR+     V  ++      P+AV FT LI   C +        L  ++R  G  
Sbjct: 318 QGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVR 377

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D  TYN ++NGLCR      A  +  EM +          PD +TY+T+IDG CKE   
Sbjct: 378 PDAVTYNAIVNGLCRARDLKSASGIVVEMRSAG------LRPDTVTYTTLIDGYCKEEEL 431

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                   MA     N +A    L  V      +  LI GL K  +   A  +   +  A
Sbjct: 432 D-------MAMEIKQNMVAEGVGLDEV-----TYTALISGLSKAGRSADAERVLGEMMEA 479

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           GL P+  TY ++I   C  G +      +T   L K + + G  P + TYN+++N FCK+
Sbjct: 480 GLEPDNTTYTMVIDAFCRKGDV------KTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKL 533

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G++ +  ++   ++    +PD +T+  L+
Sbjct: 534 GQMKNADMLLNAMINIGVSPDDITYNILL 562



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 134/301 (44%), Gaps = 28/301 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  VF+ M   R  +P    F IL     K    +T+L L + +   G+ PD  TYN 
Sbjct: 327 EDARGVFEKMCG-RGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNA 385

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++N  C+   +     ++  +  +   PD VT+T+LI   C E  +  A  +   +   G
Sbjct: 386 IVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEG 445

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             LD  TY  LI+GL + G +  A  +  EM     E G+  EPD  TY+ +ID  C++ 
Sbjct: 446 VGLDEVTYTALISGLSKAGRSADAERVLGEMM----EAGL--EPDNTTYTMVIDAFCRKG 499

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                 G   +       +     P V      + +  +++G CK+ ++K A  L  ++ 
Sbjct: 500 DVKT--GLRLLKEMQNKGRK----PGV------VTYNVIMNGFCKLGQMKNADMLLNAMI 547

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+ +TYNIL+ G C  G++ + +  ++         + G  PDL  Y  ++    
Sbjct: 548 NIGVSPDDITYNILLDGHCKHGKVTDIEELKS---------AKGTVPDLGVYTSIVGEIV 598

Query: 371 K 371
           K
Sbjct: 599 K 599



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 24/224 (10%)

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           EA A + +L   G   +   +N L+  L R G    A N+F+EM +      VV      
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVV------ 276

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           +++T+I G+C+ AG           +       A   P V        +  LI GLC++ 
Sbjct: 277 SFNTMISGMCR-AGD-----LDGAETLHRRMSEAGVTPDV------YTYGALIQGLCRVG 324

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           +++ AR +F+ +   G+ PN V + ILI   C  G        ET+  L + +   G+ P
Sbjct: 325 RIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDA------ETMLELHREMRERGVRP 378

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           D  TYN ++N  C+   + S   I   +  +   PD VT+T+LI
Sbjct: 379 DAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLI 422



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 9/164 (5%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++  L   L+K         +   +   GL PD  TY ++I+ FC+ G V  G  +L  +
Sbjct: 452 TYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEM 511

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 P  VT+  ++   C   ++  A  L   +   G   D  TYN L++G C+ G  
Sbjct: 512 QNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGK- 570

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
              +   EE+ +  G       PD   Y++I+  + K+  +  +
Sbjct: 571 ---VTDIEELKSAKGTV-----PDLGVYTSIVGEIVKKKTTKTY 606



 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           AGL P    +N+L+R L   G++   ++      +F  + S G+   + ++N +I+  C+
Sbjct: 234 AGLPPEAKLFNVLMRDLVRLGELASAQN------VFDEMQSRGVRRTVVSFNTMISGMCR 287

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            G +     +  R+  +  TPD  T+ +LI+ L
Sbjct: 288 AGDLDGAETLHRRMSEAGVTPDVYTYGALIQGL 320


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 156/343 (45%), Gaps = 47/343 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  L   L + + ++   S+F+ +   G  P+ ++Y+ILI   C+  +V     +
Sbjct: 50  PNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAEL 109

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     P+ VT+ SL+  LC   ++ EA  LF+++   GC  D   YN LI+G  +
Sbjct: 110 LNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSK 169

Query: 208 TGHTIVALNLFEEMANGN------------------GEFGVV-----------CEPDAIT 238
            G    A  LFEEM                      GEFG V           C P+  T
Sbjct: 170 KGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFT 229

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           ++ ++DG CK            M      +++      +      +++  LI G+C   K
Sbjct: 230 FNNLLDGFCK------------MGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGK 277

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
              A+ L + + R+G+ P++V+YNILI G    G +D          LF  +  +GL PD
Sbjct: 278 PHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHA------IKLFYEIPKSGLEPD 331

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            ++Y+ +I+C C+ G+V + FV+F  ++ +   PDA     L+
Sbjct: 332 AFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLV 374



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 135/302 (44%), Gaps = 35/302 (11%)

Query: 60  SGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT 119
           S +GD+      EA  +F+ ML  +   P V ++N L    ++   +  V SLFK +   
Sbjct: 168 SKKGDM-----GEAYRLFEEMLE-KGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQ 221

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  P+ +T+N L++ FCKMG +     +   +      PD V++ +LI+ +C++ +  EA
Sbjct: 222 GCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEA 281

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L  ++   G   D+ +YN LI+G  ++G    A+ LF E+           EPDA +Y
Sbjct: 282 QRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSG------LEPDAFSY 335

Query: 240 STIIDGLCKEAG-SANFLGFSCMASFSALNKMAFYFPLV--------------------R 278
           STIID LC+     A F+ F  M +  +    A   PLV                    +
Sbjct: 336 STIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVK 395

Query: 279 VQCLCL--NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
            +C+ L   +  L+  LCK  +     E+F  L   G  P+V    +++  L      D 
Sbjct: 396 FECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDKDA 455

Query: 337 TK 338
            +
Sbjct: 456 AE 457



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 28/248 (11%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           +    +++  L++ L    R       +  +   GC  + +TY  L+  LC+      A 
Sbjct: 13  YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEAR 72

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM--AFY 273
           ++F  MA         C P+  +YS +I GLC+        G     +   LN+M    +
Sbjct: 73  SVFRGMAAQG------CSPNVFSYSILIAGLCR--------GQKVDEAAELLNEMIDGGH 118

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
            P V      + +  L+ GLCK+ KLK A +LF  +   G  P+ V YN+LI G    G 
Sbjct: 119 QPNV------VTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGD 172

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           M E       + LF+ +   G  P ++TYN L++ F + G       +F  +L     P+
Sbjct: 173 MGEA------YRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPN 226

Query: 394 AVTFTSLI 401
             TF +L+
Sbjct: 227 IFTFNNLL 234


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 159/337 (47%), Gaps = 28/337 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++ + +F+  +  R   P V SFN++   + +       L L +R+N  G  PD  T+NI
Sbjct: 232 HDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 291

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           L++  C+   VS G  VL R+ R     P+ VTFTS+I   C   ++ +A A++  +   
Sbjct: 292 LVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 351

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +  TYN LING  + G    A+ ++++M        + C PD +T+S++IDG C+ 
Sbjct: 352 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR------LRCPPDVVTFSSLIDGYCRC 405

Query: 250 AGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
               + L  +S MA               R+Q     F  +I  LCK ++   A  L   
Sbjct: 406 GQLDDALRIWSDMAQH-------------RIQPNVYTFSIIIHSLCKQNRSDEAIGLLNE 452

Query: 309 LP-RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           L  R  + P    YN +I  LC  G++DE        L+ K +   G  PD YTY ILI 
Sbjct: 453 LNLRPDIAPQAFIYNPVIDVLCKCGKVDEAN------LIRKGMEEKGCRPDKYTYTILII 506

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +C   R+S   + F  ++ +  +PD++T    I  L
Sbjct: 507 GYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCL 543



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 142/299 (47%), Gaps = 29/299 (9%)

Query: 108 TVLSLFKRLNLTGLF--PDRYTYNILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVTFT 164
           + L++F  L+ + L   P  ++   +I   C+ GR +    +  ++     ++PDA  F 
Sbjct: 125 SALAVFTALHCSPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDA-RFL 183

Query: 165 SLIKDLCAESRIMEAAA-LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           S +   C  + +++A+A L +K   FGC ++ + YN L++ L   G     + LFE    
Sbjct: 184 SFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQ 243

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
                  V  PD  +++ +I G+C+       L          +N+       V      
Sbjct: 244 DR-----VYSPDVWSFNVVIKGVCRVGQVQKALEL-----VERMNEFGCSPDTV------ 287

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGL-MPNVVTYNILIRGLCNDGQMDETKHYET 342
                L+DGLC+ +++    E+ + L R G+ MPNVVT+  +I G C  G++      E 
Sbjct: 288 -THNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKL------ED 340

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              ++  + ++G+ P+  TYN+LIN + K+G + S   ++ ++      PD VTF+SLI
Sbjct: 341 AMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLI 399



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 112/254 (44%), Gaps = 21/254 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F  +     K    +  ++++  +  +G+ P+  TYN+LIN + K+G +     V
Sbjct: 320 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 379

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++ R    PD VTF+SLI   C   ++ +A  +++ +     + +V+T++ +I+ LC+
Sbjct: 380 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 439

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
              +  A+ L  E+ N   +      P A  Y+ +ID LCK  +   AN +         
Sbjct: 440 QNRSDEAIGLLNEL-NLRPDIA----PQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGC 494

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             +K  +                LI G C  S++  A   F  +  AG  P+ +T N  I
Sbjct: 495 RPDKYTYTI--------------LIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFI 540

Query: 326 RGLCNDGQMDETKH 339
             L   G  +E  H
Sbjct: 541 SCLLKAGMPNEVDH 554


>gi|115474407|ref|NP_001060800.1| Os08g0107700 [Oryza sativa Japonica Group]
 gi|113622769|dbj|BAF22714.1| Os08g0107700, partial [Oryza sativa Japonica Group]
          Length = 374

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 177/369 (47%), Gaps = 32/369 (8%)

Query: 41  LTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCL 100
           L+  D   + +F   + +   E        + A   FD +L+ RP+   +   N      
Sbjct: 6   LSAPDGTKVSRFNLMKLQGRQEAAAAGTDSHHAHHAFDELLH-RPTTSSIVDLNRALSDA 64

Query: 101 AKTKHYDTV-LSLFKRLNLTG---LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF 156
           A+  H   V +SLF+R+ +     + P+  TY+++I+C  ++G +   F  LGR++RS +
Sbjct: 65  AR--HSPAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGW 122

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAAL-FTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           T +A+TF+ L+K LC + R  EA  +   ++ V GC  +VF+Y  L+ GLC    +  AL
Sbjct: 123 TAEAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQAL 182

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
           +L   M   +   G    PD ++Y+T+I+GL +E                 L+     F 
Sbjct: 183 HLLHTMMVADDTRGGY-PPDVVSYNTVINGLLREG--------------RQLDTAYHLFD 227

Query: 276 LVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
            +  Q L    + +  +I  L K   +  A  +   + + G MPN +T+N L+ G C+ G
Sbjct: 228 QMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSG 287

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           + ++         +FKR+   G+ PD++TYN L+   CK GR      IF  ++     P
Sbjct: 288 KPND------AIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKP 341

Query: 393 DAVTFTSLI 401
           ++ T+ +L+
Sbjct: 342 NSATYGTLL 350



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 11/185 (5%)

Query: 71  NEALCVFDYML---NMRPSRPP-VTSFN-ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
            +AL +   M+   + R   PP V S+N ++ G L + +  DT   LF ++   GL PD 
Sbjct: 179 QQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDV 238

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            TYN +I+   K   +    VVL R++++   P+ +T  SL+   C+  +  +A  +F +
Sbjct: 239 VTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKR 298

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +   G E DVFTYNTL+  LC+ G ++ A  +F+ M    G      +P++ TY T++ G
Sbjct: 299 MCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVK-RGH-----KPNSATYGTLLHG 352

Query: 246 LCKEA 250
              E 
Sbjct: 353 YATEG 357



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 2/156 (1%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  +FD ML+   S P V ++N +   L+K +  D    +  R+   G  P+R T+N 
Sbjct: 220 DTAYHLFDQMLDQGLS-PDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNS 278

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +C  G+ +    V  R+ R    PD  T+ +L+  LC   R MEA  +F  +   G
Sbjct: 279 LLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRG 338

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
            + +  TY TL++G    G ++V ++   +M   NG
Sbjct: 339 HKPNSATYGTLLHGYATEG-SLVKMHHLLDMMVRNG 373



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 335 DETKHYETVFL-LFKRL---NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
           D  +H   V + LF+R+       + P+L TY+++I+C  ++G +   F   GR++ S +
Sbjct: 63  DAARHSPAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGW 122

Query: 391 TPDAVTFTSLIKIL 404
           T +A+TF+ L+K L
Sbjct: 123 TAEAITFSPLLKAL 136


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 160/324 (49%), Gaps = 26/324 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F  M++ +   P V ++  L   L K +       LF+     G  P   TYN 
Sbjct: 222 DKAITLFKQMVD-KAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNT 280

Query: 131 LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +I+  CK GR+ +   +   ++R     PD  T+++LI  L   +R  +A  L+ ++   
Sbjct: 281 MIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDT 340

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           GC  DV TYNTL++GLC++G    A+ +F +M  GN     VC+P+ ITY+ +ID  CK 
Sbjct: 341 GCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGN-----VCDPNVITYTVLIDRFCK- 394

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
               + LG +         K+A       +    + F  +I  LCK S++  A ELF+S+
Sbjct: 395 ---VDRLGDAV--------KLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESI 443

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            +    P+ V +N ++ G C   ++D+ K       L  R+  +G  P L TY  L+  F
Sbjct: 444 GKT-CKPDSVLFNTMLAGYCKITRIDDAKK------LHDRMLDSGCAPTLATYTALVTGF 496

Query: 370 CKIGRVSSGFVIFGRILPSCFTPD 393
           C+ GR S   +++  ++   F P+
Sbjct: 497 CRTGRYSDALIMYHEMIEMGFPPE 520



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 152/315 (48%), Gaps = 25/315 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S+ I+   L K++  D  ++LFK++    ++PD  TY  LI+   K  RV   + +
Sbjct: 203 PNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDL 262

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVFGCELDVFTYNTLINGLC 206
                     P  VT+ ++I  LC   RI  A  L+  + R    + D+FTY+ LINGL 
Sbjct: 263 FEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLN 322

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            +     A  L+EEM +        C PD +TY+T++DGLCK +G  +      M  F  
Sbjct: 323 LSNRGEKAYELYEEMLDTG------CSPDVVTYNTLLDGLCK-SGCED----KAMEIFRK 371

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +       P V      + +  LID  CK+ +L  A +L + +    L+P+ VT+  +I+
Sbjct: 372 MGVGNVCDPNV------ITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQ 425

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC + ++DE         LF+ +  T   PD   +N ++  +CKI R+     +  R+L
Sbjct: 426 KLCKESRIDEAHE------LFESIGKT-CKPDSVLFNTMLAGYCKITRIDDAKKLHDRML 478

Query: 387 PSCFTPDAVTFTSLI 401
            S   P   T+T+L+
Sbjct: 479 DSGCAPTLATYTALV 493



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 156/322 (48%), Gaps = 32/322 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   S+N L     K       L+LF  +  +G+   R ++NI++   C  G++S  + 
Sbjct: 134 EPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAVLR-SHNIVLRGLCSGGKISMAWE 192

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V  + +   F+P+ +++T +I  LC   ++ +A  LF ++       DV TY  LI+GL 
Sbjct: 193 VF-KDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLG 251

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      A +LFEE A   G     C P  +TY+T+IDGLCK  G               
Sbjct: 252 KQRRVKEAYDLFEE-ARAKG-----CHPTVVTYNTMIDGLCK-CGRIE------------ 292

Query: 267 LNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            N +  Y  +VR   L      +  LI+GL   ++ + A EL++ +   G  P+VVTYN 
Sbjct: 293 -NALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNT 351

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGL-FPDLYTYNILINCFCKIGRVSSGFVIF 382
           L+ GLC  G  D+         +F+++    +  P++ TY +LI+ FCK+ R+     + 
Sbjct: 352 LLDGLCKSGCEDKAME------IFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLA 405

Query: 383 GRILPSCFTPDAVTFTSLIKIL 404
             +      PDAVTFT++I+ L
Sbjct: 406 KEMEGRSLLPDAVTFTTVIQKL 427



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 137/282 (48%), Gaps = 27/282 (9%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           +R+T N L++ + K  RV    +     +++ F PD V++ +L+        + +A ALF
Sbjct: 101 NRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALF 160

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            +++  G  + + ++N ++ GLC  G   +A  +F++M+        +  P+ I+Y+ +I
Sbjct: 161 GEMKDSGIAV-LRSHNIVLRGLCSGGKISMAWEVFKDMSG-------IFSPNLISYTIMI 212

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           DGLCK       +       F  +   A Y  +V        +  LIDGL K  ++K A 
Sbjct: 213 DGLCKSRKVDKAITL-----FKQMVDKAIYPDVV-------TYGALIDGLGKQRRVKEAY 260

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL-NSTGLFPDLYTY 362
           +LF+     G  P VVTYN +I GLC  G++      E    L+  +     L PD++TY
Sbjct: 261 DLFEEARAKGCHPTVVTYNTMIDGLCKCGRI------ENALTLYDDMVREPHLKPDMFTY 314

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + LIN      R    + ++  +L +  +PD VT+ +L+  L
Sbjct: 315 SALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGL 356


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 154/356 (43%), Gaps = 55/356 (15%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++ ++   P V S++ +     +    D V  L + +   GL P+ Y Y  +I   C++ 
Sbjct: 271 LMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRIC 330

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           +++        ++R    PD V +T+LI   C    I  A+  F ++       DV TY 
Sbjct: 331 KLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYT 390

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            +I+G C+ G  + A  LF EM      F    EPD++T++ +I+G CK     +     
Sbjct: 391 AIISGFCQIGDMVEAGKLFHEM------FCKGLEPDSVTFTELINGYCKAGHMKD----- 439

Query: 260 CMASFSALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
              +F   N M        +Q  C    + +  LIDGLCK   L  A EL   + + GL 
Sbjct: 440 ---AFRVHNHM--------IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 488

Query: 316 PNVVTYNILIRGLCNDGQMDET----KHYETVFL-------------------------L 346
           PN+ TYN ++ GLC  G ++E       +E   L                         +
Sbjct: 489 PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 548

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            K +   GL P + T+N+L+N FC  G +  G  +   +L     P+A TF SL+K
Sbjct: 549 LKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVK 604



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 34/317 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V S+NI+   + +         L   + L G  PD  +Y+ ++N +C+ G +   + ++ 
Sbjct: 246 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 305

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            + R    P++  + S+I  LC   ++ EA   F+++   G   D   Y TLI+G C+ G
Sbjct: 306 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 365

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-----EAGSANFLGFSCMASF 264
               A   F EM + +        PD +TY+ II G C+     EAG   F    C    
Sbjct: 366 DIRAASKFFYEMHSRD------ITPDVLTYTAIISGFCQIGDMVEAGKL-FHEMFCKG-- 416

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
                         ++   + F  LI+G CK   +K A  +   + +AG  PNVVTY  L
Sbjct: 417 --------------LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I GLC +G +D          L   +   GL P+++TYN ++N  CK G +     + G 
Sbjct: 463 IDGLCKEGDLDSANE------LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGE 516

Query: 385 ILPSCFTPDAVTFTSLI 401
              +    D VT+T+L+
Sbjct: 517 FEAAGLNADTVTYTTLM 533



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 147/368 (39%), Gaps = 58/368 (15%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P    +  + G L +          F  +   G+ PD   Y  LI+ FCK G +     
Sbjct: 313 KPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK 372

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
               +     TPD +T+T++I   C    ++EA  LF ++   G E D  T+  LING C
Sbjct: 373 FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYC 432

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG--SANFL-------- 256
           + GH   A  +   M          C P+ +TY+T+IDGLCKE    SAN L        
Sbjct: 433 KAGHMKDAFRVHNHMIQAG------CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486

Query: 257 -------------GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
                        G     +     K+   F    +    + +  L+D  CK  ++  A+
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE-----------------------TKHY 340
           E+ + +   GL P +VT+N+L+ G C  G +++                        K Y
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 606

Query: 341 ------ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
                 +    ++K + S G+ PD  TY  L+   CK   +   + +F  +    F+   
Sbjct: 607 CIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSV 666

Query: 395 VTFTSLIK 402
            T++ LIK
Sbjct: 667 STYSVLIK 674



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 145/349 (41%), Gaps = 37/349 (10%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A   F Y ++ R   P V ++  +     +         LF  +   GL PD  T+  LI
Sbjct: 369 AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELI 428

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N +CK G +   F V   ++++  +P+ VT+T+LI  LC E  +  A  L  ++   G +
Sbjct: 429 NGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 488

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-CEPDAITYSTIIDGLCK--E 249
            ++FTYN+++NGLC++G+   A+ L        GEF       D +TY+T++D  CK  E
Sbjct: 489 PNIFTYNSIVNGLCKSGNIEEAVKLV-------GEFEAAGLNADTVTYTTLMDAYCKSGE 541

Query: 250 AGSANFL---------------------GFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
              A  +                     GF          K+  +     +      F  
Sbjct: 542 MDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNS 601

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+   C  + LK A  +++ +   G+ P+  TY  L++G C    M E       + LF+
Sbjct: 602 LVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEA------WFLFQ 655

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
            +   G    + TY++LI  F K  +      +F ++       D   F
Sbjct: 656 EMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 704



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 122/289 (42%), Gaps = 27/289 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  V ++M+    S P V ++  L   L K    D+   L   +   GL P+ +TYN 
Sbjct: 438 KDAFRVHNHMIQAGCS-PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 496

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++N  CK G +     ++G    +    D VT+T+L+   C    + +A  +  ++   G
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 556

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-KE 249
            +  + T+N L+NG C  G     L   E++ N     G+   P+A T+++++   C + 
Sbjct: 557 LQPTIVTFNVLMNGFCLHG----MLEDGEKLLNWMLAKGIA--PNATTFNSLVKQYCIRN 610

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              A    +  M S         Y  LV+             G CK   +K A  LFQ +
Sbjct: 611 NLKAATAIYKDMCSRGVGPDGKTYENLVK-------------GHCKARNMKEAWFLFQEM 657

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
              G   +V TY++LI+G     +  E +       +F ++   GL  D
Sbjct: 658 KGKGFSVSVSTYSVLIKGFLKRKKFLEARE------VFDQMRREGLAAD 700



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +F+  P  G+  NV +YNI+I  +C  G++ E  H     LL   L   G  PD+ +Y+ 
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHH----LLLLMELK--GYTPDVISYST 286

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++N +C+ G +   + +   +      P++  + S+I +L
Sbjct: 287 VVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLL 326


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 153/322 (47%), Gaps = 32/322 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++  L   L  +      + LF R++  G+FP+  TYN LIN   +  R+ + FV
Sbjct: 522 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 581

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL  + R+    + VT+  +IK  C      +A  +   +   G   ++ TYNT+I G C
Sbjct: 582 VLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYC 641

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS-FS 265
            +G+T  AL + + M +G       C+PD  +Y+ +I G CK          S M S F 
Sbjct: 642 DSGNTTSALRILDLMRDGG------CKPDEWSYTELICGFCK---------ISKMESAFG 686

Query: 266 ALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
             N+M           LC N   +  LIDG CK  KL  A  L + + R+G  PNV TYN
Sbjct: 687 LFNEMVD-------DGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 739

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           +LI GL         +       L K +   G+FP++ TY  +I+  CK G  S    +F
Sbjct: 740 VLIHGLTKQNNFSGAEE------LCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMF 793

Query: 383 GRILPSCFTPDAVTFTSLIKIL 404
            +++     P+ +T++SLI+ L
Sbjct: 794 NKMIEQGCLPNLLTYSSLIRAL 815



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 147/332 (44%), Gaps = 42/332 (12%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ML+    R  + +++ L   L++      V+  + R+   G+ P+   YN +IN  CK G
Sbjct: 340 MLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDG 399

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V+    ++ ++  S  +PD  T+TS+I   C +  +  A  +F ++   GCE +  TY+
Sbjct: 400 NVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYS 459

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TLINGLC +G    A +L  EM                    I+ G+   A        +
Sbjct: 460 TLINGLCDSGRVNEAFDLIREM--------------------ILHGILPTA-------HT 492

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLC---------LIDGLCKISKLKIARELFQSLP 310
           C     AL  M  Y    R+     N  C         LI GLC    LK+A  LF  + 
Sbjct: 493 CTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMS 552

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R G+ PN VTYN LI  L       E +  +  F++   +   GLF ++ TYN +I  +C
Sbjct: 553 RDGVFPNTVTYNALINILV------ENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYC 606

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            +G      ++   +L    + + VT+ ++IK
Sbjct: 607 ILGDPKKAMLVMNNMLQRGHSANLVTYNTIIK 638



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 138/334 (41%), Gaps = 32/334 (9%)

Query: 87   RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            RP V ++N+L   L K  ++     L K +   G+FP+  TY  +I+  CK G  S    
Sbjct: 732  RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 791

Query: 147  VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            +  +++     P+ +T++SLI+ L  E ++ EA  LF +L   G   D  TY  +I    
Sbjct: 792  MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYI 851

Query: 207  RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN------------ 254
             +G    A N    M          C+P   TY  +I GL  E   A+            
Sbjct: 852  MSGKVEHAFNFLGRMIKAG------CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPN 905

Query: 255  -FLGFSC--MASFSALN-KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
               G+      + S ++ K+A   P + VQ        L+  L    +   A EL  S+ 
Sbjct: 906  CSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQN----ALVSNLSTAGRWFEANELLGSMI 961

Query: 311  RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
              GL P+   YN L   LC+   +   ++ +    +FK +++ G    L  Y  LI   C
Sbjct: 962  SQGLCPDQEAYNSL---LCS---LLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALC 1015

Query: 371  KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            ++ R     + F  +L   + PD V    LI  L
Sbjct: 1016 QLHRRKEARITFENMLMRTWNPDDVVQAVLIDGL 1049



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 128/332 (38%), Gaps = 95/332 (28%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P +A+ V + ML  R     + ++N +      + +  + L +   +   G  PD ++Y 
Sbjct: 611 PKKAMLVMNNMLQ-RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYT 669

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI  FCK+ ++   F +   ++     P+ VT+T+LI   C + ++  A +L   ++  
Sbjct: 670 ELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS 729

Query: 190 GCELDVFTYNTLI-----------------------------------NGLCRTGHTIVA 214
           GC  +V TYN LI                                   +GLC+ G T +A
Sbjct: 730 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 789

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
           L +F +M     E G  C P+ +TYS++I  L +E                         
Sbjct: 790 LEMFNKMI----EQG--CLPNLLTYSSLIRALGQEG------------------------ 819

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
                                  K++ A  LF  L R GL+P+ +TY  +I      G++
Sbjct: 820 -----------------------KVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKV 856

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
                 E  F    R+   G  P L+TY +LI
Sbjct: 857 ------EHAFNFLGRMIKAGCQPTLWTYGVLI 882



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 62/287 (21%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +++SC + +A+  T    D+ ++S               G  + +F Y+ L+  L R G
Sbjct: 320 HLIKSCHSKEAMARTMSFLDMLSQS---------------GLRMGLFAYSALLIHLSRLG 364

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
            T   ++ +  M +     GV  +P+ + Y+ +I+ LCK+   A+          S ++ 
Sbjct: 365 MTAAVMDRYHRMLSE----GV--QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSP 418

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
             F             +  +I G C+   L  A ++F  + + G  PN VTY+ LI GLC
Sbjct: 419 DTF------------TYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 466

Query: 330 NDGQMDE---------------TKH--------------YETVFLLFKRLNSTGLFPDLY 360
           + G+++E               T H              YE  + LF  + + G  P++Y
Sbjct: 467 DSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVY 526

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           TY  LI+  C  G +     +F R+      P+ VT+ +LI IL  N
Sbjct: 527 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVEN 573



 Score = 44.7 bits (104), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 129  NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            N L++     GR      +LG ++     PD   + SL+  L     +  A  +F  +  
Sbjct: 938  NALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMST 997

Query: 189  FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
             GCE+ +  Y  LI  LC+      A   FE M            PD +  + +IDGL +
Sbjct: 998  QGCEVHLNGYKELICALCQLHRRKEARITFENM------LMRTWNPDDVVQAVLIDGLLR 1051

Query: 249  EA 250
            + 
Sbjct: 1052 DG 1053


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 157/314 (50%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N++ G L + +  D  + L + +   GL PD YTY+ILIN FC   R     ++
Sbjct: 248 PNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLM 307

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     P+ +T+ +LI     +  I +A  +  ++   G E ++  +NTL+NG+C+
Sbjct: 308 LLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCK 367

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    AL + +EM     E GV  EPD+ TYS +I+G C+        G +   +F  L
Sbjct: 368 AGKMEKALEIMQEMM----EKGV--EPDSQTYSLLIEGHCR--------GQNMARAFELL 413

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           ++M       ++    L +  +I+GLC+   L+    + + +   GL PN V Y  L+  
Sbjct: 414 DEMKKR----KLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 469

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
              +G+++E++      ++ +R+   G+ PD++ YN LI  FCK  R+         +L 
Sbjct: 470 HAKEGRVEESR------MILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLE 523

Query: 388 SCFTPDAVTFTSLI 401
               P+A T+ + I
Sbjct: 524 RRLRPNAHTYGAFI 537



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 153/350 (43%), Gaps = 34/350 (9%)

Query: 52  FLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
            ++  CK   EG++T     EA  VF ++L+ R  +  V ++++L   L++         
Sbjct: 571 LIEGHCK---EGNVT-----EAFSVFRFILSRRVLQD-VQTYSVLIHGLSRNGKMHEAFG 621

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           +F  L   GL P+ +TYN LI+  CK G V     +L  +      PD VT+  LI  LC
Sbjct: 622 IFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLC 681

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
               I  A  LF  +   G   +  TY  +++G C++ +   A  L EEM       GV 
Sbjct: 682 KAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEML----LRGV- 736

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
             PDA  Y+ I++  CKE      L       F  + +  F           ++F  LI+
Sbjct: 737 -PPDAFIYNVILNFCCKEEKFEKALDL-----FQEMLEKGF--------ASTVSFNTLIE 782

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           G CK  KL+ A  L + +     +PN VTY  LI   C  G M E K       L+  + 
Sbjct: 783 GYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKR------LWLEMQ 836

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              + P   TY  L++ +  IG +S    +F  ++     PD +T+  +I
Sbjct: 837 ERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMI 886



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 142/322 (44%), Gaps = 26/322 (8%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P V +++++   L +  +     ++ + + + GL P+   Y  L+    K GR
Sbjct: 416 MKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGR 475

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V    ++L R+      PD   + SLI   C   R+ EA     ++       +  TY  
Sbjct: 476 VEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGA 535

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
            I+G  + G   +A   F EM +     GV+  P+   Y+ +I+G CKE         + 
Sbjct: 536 FIDGYSKAGEMEIADRYFNEMLS----CGVL--PNVGIYTALIEGHCKEG--------NV 581

Query: 261 MASFSALNKMAFYFPLV-RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
             +FS      F F L  RV      +  LI GL +  K+  A  +F  L   GL+PN  
Sbjct: 582 TEAFS-----VFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAF 636

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TYN LI G C  G +D+         L + +   G+ PD+ TYNILI+  CK G +    
Sbjct: 637 TYNSLISGSCKQGNVDKASQ------LLEEMCIKGINPDIVTYNILIDGLCKAGEIERAK 690

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  I     TP+ VT+ +++
Sbjct: 691 NLFDDIEGRGLTPNCVTYAAMV 712



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 146/328 (44%), Gaps = 33/328 (10%)

Query: 79  YMLNM--RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           Y++ M  R  RP   ++       +K    +     F  +   G+ P+   Y  LI   C
Sbjct: 517 YLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHC 576

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           K G V+  F V   IL      D  T++ LI  L    ++ EA  +F++L+  G   + F
Sbjct: 577 KEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAF 636

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           TYN+LI+G C+ G+   A  L EEM            PD +TY+ +IDGLCK AG     
Sbjct: 637 TYNSLISGSCKQGNVDKASQLLEEMCIKG------INPDIVTYNILIDGLCK-AGE---- 685

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
                     + +    F  +  + L   C+ +  ++DG CK      A +L + +   G
Sbjct: 686 ----------IERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG 735

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           + P+   YN+++   C +      + +E    LF+ +   G F    ++N LI  +CK G
Sbjct: 736 VPPDAFIYNVILNFCCKE------EKFEKALDLFQEMLEKG-FASTVSFNTLIEGYCKSG 788

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++     +   ++   F P+ VT+TSLI
Sbjct: 789 KLQEANHLLEEMIEKQFIPNHVTYTSLI 816



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 144/315 (45%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP + S N L G L K    +    +F  +    + PD YTY  +I+  CK+G V     
Sbjct: 177 RPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKR 236

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL  +     +P+ VT+  +I  LC    + EA  L   +   G   D++TY+ LING C
Sbjct: 237 VLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFC 296

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
               +  A  +  EM +      V  +P+ ITY+ +IDG  ++             +F  
Sbjct: 297 MEKRSREAKLMLLEMID------VGLKPEPITYNALIDGFMRQG--------DIEQAFRI 342

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            ++M        ++   + +  L++G+CK  K++ A E+ Q +   G+ P+  TY++LI 
Sbjct: 343 KDEMV----ACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIE 398

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C    M         F L   +    L P + TY+++IN  C+ G +     I   ++
Sbjct: 399 GHCRGQNM------ARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMV 452

Query: 387 PSCFTPDAVTFTSLI 401
            +   P+AV +T+L+
Sbjct: 453 MNGLKPNAVVYTTLM 467



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 125/280 (44%), Gaps = 24/280 (8%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+   +++L++ + KMG +     V        F P  ++  SL+ DL   +++     +
Sbjct: 143 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 202

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F  +       DV+TY  +I+  C+ G+   A  +  EM    GE G  C P+ +TY+ I
Sbjct: 203 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEM----GEKG--CSPNLVTYNVI 256

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           I GLC+    A  L  +     S ++K     P +        +  LI+G C   + + A
Sbjct: 257 IGGLCR----ARLLDEAIELKRSMVDK--GLVPDL------YTYDILINGFCMEKRSREA 304

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
           + +   +   GL P  +TYN LI G    G +      E  F +   + + G+  +L  +
Sbjct: 305 KLMLLEMIDVGLKPEPITYNALIDGFMRQGDI------EQAFRIKDEMVACGIEANLIIW 358

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           N L+N  CK G++     I   ++     PD+ T++ LI+
Sbjct: 359 NTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIE 398



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 22/303 (7%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G   S  P  A  + + ML +R   P    +N++     K + ++  L LF+ +   G 
Sbjct: 713 DGYCKSKNPTAAFQLLEEML-LRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG- 770

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
           F    ++N LI  +CK G++     +L  ++   F P+ VT+TSLI   C    + EA  
Sbjct: 771 FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKR 830

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYS 240
           L+ +++         TY +L++G    G+      LFEEM A G        EPD +TY 
Sbjct: 831 LWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKG-------IEPDKMTYY 883

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
            +ID  C+E         +C      L K     P+         +  LI  LCK  +  
Sbjct: 884 VMIDAYCREGNVME----ACKLKDEILVK---GMPMSVAA-----YDALIQALCKKEEFF 931

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
              +L   +  +G    + T +++ RG    G MDE        + F  +++T    DL 
Sbjct: 932 EVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLV 991

Query: 361 TYN 363
             N
Sbjct: 992 DGN 994


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 38/342 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  +F  +L+   + P   ++  L   L     +D    LF  +N  G  P   TYN+
Sbjct: 340 NDARNLFQKLLHSGVT-PSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNV 398

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK G +     ++ +++     PD VT+ +++  LC  SR+ EA  LF ++   G
Sbjct: 399 MIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLG 458

Query: 191 CELDVFTYNTLINGLCRT---------GHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           C  +  ++NT+I GLC+          G    A  L + M + +G       PD +TYST
Sbjct: 459 CTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTD-DGHV-----PDVVTYST 512

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISKL 299
           +I GLC  A                 +       +V+ QC    +    LI GLCK  ++
Sbjct: 513 LISGLCSIA--------------RVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRI 558

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
           K ARE+  ++  +G  P+VVTYN L+ G C  GQ +  +       L   + + GL P++
Sbjct: 559 KEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARE------LLSDMVARGLAPNV 612

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            TY  L++  CK  R+     +F ++  S   P+  T+T+LI
Sbjct: 613 VTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALI 654



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 155/313 (49%), Gaps = 21/313 (6%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
            +NI+   L +    D  + +F+++N   + PD ++Y ILI+   K G+++    +  ++
Sbjct: 290 GYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKL 349

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           L S  TP  V +TSLI  LC  +   +A  LF  +   GC     TYN +I+  C+ G  
Sbjct: 350 LHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGML 409

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A +L ++M     E G V  PD +TY+T++DGLCK +     L       F+ + ++ 
Sbjct: 410 EEACDLIKKMI----EDGHV--PDVVTYNTVMDGLCKSSRVEEALLL-----FNEMERLG 458

Query: 272 FYFPLVRVQCLCLNFLCL---IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
              P  R     +  LC    ID  C+  KL  A  L + +   G +P+VVTY+ LI GL
Sbjct: 459 CT-PNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGL 517

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C+  ++D+ +H      L + +      P + T N LI+  CK GR+     +   ++ S
Sbjct: 518 CSIARVDDARH------LLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSS 571

Query: 389 CFTPDAVTFTSLI 401
             +PD VT+ +L+
Sbjct: 572 GQSPDVVTYNTLV 584



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 153/329 (46%), Gaps = 33/329 (10%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +N R   P   ++N++     K    +    L K++   G  PD  TYN +++  CK  R
Sbjct: 384 MNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSR 443

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA---------LFTKLRVFGC 191
           V    ++   + R   TP+  +  ++I  LC +S+I +A           L  ++   G 
Sbjct: 444 VEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGH 503

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV TY+TLI+GLC       A +L E+M          C+P  +T +T+I GLCK AG
Sbjct: 504 VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQ------CKPTVVTQNTLIHGLCK-AG 556

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                      +   L+ M        V    + +  L+ G C+  + + AREL   +  
Sbjct: 557 RIK-------EAREVLDAMVSSGQSPDV----VTYNTLVHGHCRAGQTERARELLSDMVA 605

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL PNVVTY  L+ GLC   ++ E         +F ++ S+G  P+L+TY  LI  FC 
Sbjct: 606 RGLAPNVVTYTALVSGLCKANRLPEACG------VFAQMKSSGCAPNLFTYTALILGFCS 659

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
            G+V  G  +FG ++ +  +PD V + +L
Sbjct: 660 AGQVDGGLKLFGEMVCAGISPDHVVYGTL 688



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 140/306 (45%), Gaps = 37/306 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI---------NCFCKM 138
           P V ++N +   L K+   +  L LF  +   G  P+R ++N +I         +  C+ 
Sbjct: 426 PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQR 485

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G++   F +L R+      PD VT+++LI  LC+ +R+ +A  L   +    C+  V T 
Sbjct: 486 GKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQ 545

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS--ANFL 256
           NTLI+GLC+ G    A  + + M + +G+      PD +TY+T++ G C+   +  A  L
Sbjct: 546 NTLIHGLCKAGRIKEAREVLDAMVS-SGQ-----SPDVVTYNTLVHGHCRAGQTERAREL 599

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
               +A   A N               + +  L+ GLCK ++L  A  +F  +  +G  P
Sbjct: 600 LSDMVARGLAPN--------------VVTYTALVSGLCKANRLPEACGVFAQMKSSGCAP 645

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           N+ TY  LI G C+ GQ+D          LF  +   G+ PD   Y  L    CK GR +
Sbjct: 646 NLFTYTALILGFCSAGQVDGG------LKLFGEMVCAGISPDHVVYGTLAAELCKSGRSA 699

Query: 377 SGFVIF 382
               I 
Sbjct: 700 RALEIL 705



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 112/258 (43%), Gaps = 22/258 (8%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  +P V + N L   L K         +   +  +G  PD  TYN L++  C+ G+   
Sbjct: 536 RQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTER 595

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +L  ++     P+ VT+T+L+  LC  +R+ EA  +F +++  GC  ++FTY  LI 
Sbjct: 596 ARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALIL 655

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVC---EPDAITYSTIIDGLCKEAGSANFLGFSC 260
           G C  G     L LF EM         VC    PD + Y T+   LCK   SA  L    
Sbjct: 656 GFCSAGQVDGGLKLFGEM---------VCAGISPDHVVYGTLAAELCKSGRSARALEI-L 705

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                +L   A+   + R           +DGL +  K+++A    + + R G +P    
Sbjct: 706 REGRESLRSEAWGDEVYRFA---------VDGLLEAGKMEMALGFVRDMVRGGQLPAPER 756

Query: 321 YNILIRGLCNDGQMDETK 338
              L+ GLC  GQ  E +
Sbjct: 757 CASLVAGLCKSGQGGEAR 774



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 150/374 (40%), Gaps = 63/374 (16%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ +F  M       P V  +N+L   L+K +  + V  + + +   G FPD +T+  +
Sbjct: 28  EAVKIFSLMEECHSPYPDV--YNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTI 85

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   CK G++    +V+  +      P   T + L  +LC    +  A  L   + V   
Sbjct: 86  LCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMPV--- 142

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +   YN ++  LC+      AL L   M+                           AG
Sbjct: 143 -ANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLA--------------------AG 181

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
           S + +    M S      +  Y    R  CL +    L++G C   ++  AREL +++P 
Sbjct: 182 SLDSVLVGLMDSGRIDEALQVYRENRREPCL-VTLNVLLEGFCSRGQVDKARELLRAMPD 240

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDET----------------------KHYETVFL---- 345
               P+ V+Y  ++ GLC  G+++E                       + Y  V L    
Sbjct: 241 EECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQ 300

Query: 346 ---------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                    +F+++N   + PD ++Y ILI+   K G+++    +F ++L S  TP  V 
Sbjct: 301 NDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVA 360

Query: 397 FTSLIKIL-EINSF 409
           +TSLI  L   NSF
Sbjct: 361 YTSLIHGLCMANSF 374



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 134/314 (42%), Gaps = 21/314 (6%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
           +++NI+   L K    D  L L + ++   +     + + ++      GR+     V   
Sbjct: 146 SAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYRE 205

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
             R    P  VT   L++  C+  ++ +A  L   +    C  D  +Y T+++GLC+ G 
Sbjct: 206 NRRE---PCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGR 262

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A+ LF +    +        P    Y+ +I GLC+     N      +  F  +N+ 
Sbjct: 263 VEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQ-----NDRIDEAVQMFEKMNER 317

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                   V     ++  LIDGL K  KL  AR LFQ L  +G+ P+ V Y  LI GLC 
Sbjct: 318 -------NVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCM 370

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
               D+ +       LF  +N  G  P   TYN++I+  CK G +     +  +++    
Sbjct: 371 ANSFDDARE------LFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGH 424

Query: 391 TPDAVTFTSLIKIL 404
            PD VT+ +++  L
Sbjct: 425 VPDVVTYNTVMDGL 438



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 97/265 (36%), Gaps = 85/265 (32%)

Query: 198 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-------------------------- 231
           + ++I G C  G T  A+ +F  M   +  +  V                          
Sbjct: 13  FTSVIQGWCNVGRTFEAVKIFSLMEECHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMVD 72

Query: 232 --CEPDAITYSTIIDGLCK------------EAGSANFLGFSCMASFSA-----LNKMAF 272
             C PD+ T++TI+ GLCK            E  S     +   +SF A        M  
Sbjct: 73  RGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMER 132

Query: 273 YFPLVRVQCLCLN--FLCLIDGLCKISKLKIARELFQSLPR--------------AGLM- 315
            F L+ +  +  +  +  ++  LCK +++  A EL +++                 GLM 
Sbjct: 133 AFQLLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMD 192

Query: 316 -----------------PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
                            P +VT N+L+ G C+ GQ+D+ +       L + +      PD
Sbjct: 193 SGRIDEALQVYRENRREPCLVTLNVLLEGFCSRGQVDKARE------LLRAMPDEECAPD 246

Query: 359 LYTYNILINCFCKIGRVSSGFVIFG 383
             +Y  +++  CK GRV     +FG
Sbjct: 247 EVSYCTVLDGLCKAGRVEEAVRLFG 271


>gi|357499997|ref|XP_003620287.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357500057|ref|XP_003620317.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495302|gb|AES76505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495332|gb|AES76535.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 291

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 145/302 (48%), Gaps = 59/302 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++ +  F+ +L+ +   P +  F  + G L K  HY TV+SL +++ L G   +  T +I
Sbjct: 29  HDLVSSFNRLLHQQNPTPSIFQFGKILGSLVKINHYSTVVSLHQQMELNGFVSNLVTLSI 88

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN F ++G+    F VL +I +  + PDA+T TSLIK LC + +I +A     KL   G
Sbjct: 89  LINSFSQLGQNPLSFSVLAKIFKKGYDPDAITLTSLIKGLCLKGQIHQALHFHDKLAALG 148

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +  +Y TLINGLC+ G T  AL L   +       G + +PD + Y+ IID +CK+ 
Sbjct: 149 FRFNHVSYGTLINGLCKVGQTRAALQLLRRVD------GKLVQPDVVMYTMIIDSMCKD- 201

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                           L   AF                               +L+  + 
Sbjct: 202 ---------------KLVNEAF-------------------------------DLYSEMV 215

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+VVTY+ LI G C  G+++++        LF ++ S  + P++YT+NILI+ F 
Sbjct: 216 SKGISPDVVTYSALISGFCILGKLNDS------IGLFHKMISEKINPNMYTFNILIDAFV 269

Query: 371 KI 372
           +I
Sbjct: 270 EI 271



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 123/258 (47%), Gaps = 28/258 (10%)

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
           TP    F  ++  L   +      +L  ++ + G   ++ T + LIN   + G   ++ +
Sbjct: 45  TPSIFQFGKILGSLVKINHYSTVVSLHQQMELNGFVSNLVTLSILINSFSQLGQNPLSFS 104

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           +  ++      F    +PDAIT +++I GLC +      L F        L  + F F  
Sbjct: 105 VLAKI------FKKGYDPDAITLTSLIKGLCLKGQIHQALHFH-----DKLAALGFRFNH 153

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
           V       ++  LI+GLCK+ + + A +L + +    + P+VV Y ++I  +C D  ++E
Sbjct: 154 V-------SYGTLINGLCKVGQTRAALQLLRRVDGKLVQPDVVMYTMIIDSMCKDKLVNE 206

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                  F L+  + S G+ PD+ TY+ LI+ FC +G+++    +F +++     P+  T
Sbjct: 207 A------FDLYSEMVSKGISPDVVTYSALISGFCILGKLNDSIGLFHKMISEKINPNMYT 260

Query: 397 FTSLI----KILEINSFF 410
           F  LI    +I+ IN +F
Sbjct: 261 FNILIDAFVEIIFINPYF 278


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 160/355 (45%), Gaps = 38/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F  ML  +   P + SF+ L    ++ +H D  L  F+ +   GL PD   Y +
Sbjct: 240 SEAKEIFGEMLR-QGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTV 298

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +C+ G +     +   +L      D + + +++  LC E  + +A  LF ++   G
Sbjct: 299 LMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG 358

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
              D +T+ TLI+G C+ G+   AL+LF  M   N       +PD + Y+T+IDG CK  
Sbjct: 359 ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRN------IKPDIVAYNTLIDGFCKVG 412

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL--------------------- 287
           E   A+ L +  M S         Y  L+   C   +                       
Sbjct: 413 EMEKASEL-WDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTC 471

Query: 288 -CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             +I G C+      A E    +   G+ P+ ++YN LI G   +  MD+       FL 
Sbjct: 472 NTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKA------FLW 525

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             ++   GL PD+ TYN+++N FC+ GR+    ++  +++     PD  T+T+LI
Sbjct: 526 INKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALI 580



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 156/333 (46%), Gaps = 29/333 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + + M + +  +P + ++N +   L K   Y     +   +   GL PD  TYN L
Sbjct: 171 EAFEIMNSMAD-KGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTL 229

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   C+    S    + G +LR    PD V+F+SLI        + +A   F  ++ FG 
Sbjct: 230 LVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGL 289

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA- 250
             D   Y  L++G CR G+ + AL + +EM     E G  C  D I Y+TI++GLCKE  
Sbjct: 290 VPDNVIYTVLMHGYCRNGNMLEALKIRDEML----EQG--CVLDVIAYNTILNGLCKEKM 343

Query: 251 -GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              A+ L F  M    AL    FY            F  LI G C+   +  A  LF ++
Sbjct: 344 LTDADKL-FDEMVERGALPD--FY-----------TFTTLIHGHCQDGNMTKALSLFGTM 389

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            +  + P++V YN LI G C  G+M++         L+  + S  +FP+  TY ILIN +
Sbjct: 390 TQRNIKPDIVAYNTLIDGFCKVGEMEKASE------LWDGMISRKIFPNHITYGILINAY 443

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           C +G VS  F ++  ++     P  VT  ++IK
Sbjct: 444 CSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIK 476



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 141/335 (42%), Gaps = 35/335 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V + NI+   L K   +D V S    +   G++ D  TYN LI  +C+ G +   F ++ 
Sbjct: 118 VYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMN 177

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      P   T+ ++I  LC + R   A  +  ++   G   D  TYNTL+   CR  
Sbjct: 178 SMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRD 237

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFSALN 268
           +   A  +F EM       GVV  PD +++S++I    +        + F  M  F  + 
Sbjct: 238 NFSEAKEIFGEMLRQ----GVV--PDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVP 291

Query: 269 KMAFYFPLVRVQCLCLNFL-------------CLID---------GLCKISKLKIARELF 306
               Y  L+   C   N L             C++D         GLCK   L  A +LF
Sbjct: 292 DNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLF 351

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G +P+  T+  LI G C DG M +         LF  +    + PD+  YN LI
Sbjct: 352 DEMVERGALPDFYTFTTLIHGHCQDGNMTKA------LSLFGTMTQRNIKPDIVAYNTLI 405

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + FCK+G +     ++  ++     P+ +T+  LI
Sbjct: 406 DGFCKVGEMEKASELWDGMISRKIFPNHITYGILI 440



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 144/327 (44%), Gaps = 31/327 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL + D ML  +     V ++N +   L K K       LF  +   G  PD YT+  L
Sbjct: 311 EALKIRDEMLE-QGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTL 369

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  C+ G ++    + G + +    PD V + +LI   C    + +A+ L+  +     
Sbjct: 370 IHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKI 429

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  TY  LIN  C  GH   A  L++ M     E G+  +P  +T +T+I G C+   
Sbjct: 430 FPNHITYGILINAYCSVGHVSEAFRLWDVMI----EKGI--KPTLVTCNTVIKGYCRSGD 483

Query: 252 SA---NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           S+    FLG   +A   A + +++                LI+G  +   +  A      
Sbjct: 484 SSKADEFLG-RMIAKGVAPDHISYN--------------TLINGFVREDNMDKAFLWINK 528

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + + GL+P+++TYN+++ G C  G+M E +      L+ +++   G+ PD  TY  LIN 
Sbjct: 529 MEKEGLLPDIITYNVVMNGFCRQGRMQEAE------LVLRKMIEKGINPDRSTYTALING 582

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAV 395
                 ++  F     +L   F PD V
Sbjct: 583 HVTQDNLNEAFRFHDEMLQRGFAPDDV 609



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 146/335 (43%), Gaps = 35/335 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + + N L G L K    +    + + +  +G+  + YT NI++N  CK G+       L 
Sbjct: 83  INACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLS 142

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +  +    D VT+ +LI   C E  + EA  +   +   G +  +FTYN +INGLC+ G
Sbjct: 143 EMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKG 202

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----------------KEAGSA 253
               A  +  EM N      +   PD  TY+T++   C                ++    
Sbjct: 203 RYARAKGILIEMLN------IGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVP 256

Query: 254 NFLGFSCM-ASFS---ALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELF 306
           + + FS + A FS    L++   YF  ++   L  +   +  L+ G C+   +  A ++ 
Sbjct: 257 DLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIR 316

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G + +V+ YN ++ GLC +  + +         LF  +   G  PD YT+  LI
Sbjct: 317 DEMLEQGCVLDVIAYNTILNGLCKEKMLTDADK------LFDEMVERGALPDFYTFTTLI 370

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +  C+ G ++    +FG +      PD V + +LI
Sbjct: 371 HGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLI 405



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 112/260 (43%), Gaps = 27/260 (10%)

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
           +C T + V F  LI+      ++ E    F  LR  G  + +   N+L+ GL +     +
Sbjct: 43  NCGTNNLV-FDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVEL 101

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF-SALNKMAF 272
           A  +  E+     E  V       T + +++ LCK+        F  + SF S +     
Sbjct: 102 AWEVHREVVRSGIELNVY------TLNIMVNALCKDGK------FDDVKSFLSEMEGNGI 149

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
           Y  +V        +  LI   C+   L+ A E+  S+   GL P++ TYN +I GLC  G
Sbjct: 150 YADMV-------TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKG 202

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           +    K      +L + LN  GL PD  TYN L+   C+    S    IFG +L     P
Sbjct: 203 RYARAKG-----ILIEMLN-IGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVP 256

Query: 393 DAVTFTSLIKILEINSFFRQ 412
           D V+F+SLI +   N    Q
Sbjct: 257 DLVSFSSLIAVFSRNRHLDQ 276



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  ++D M+  +  +P + + N +     ++           R+   G+ PD  +YN 
Sbjct: 450 SEAFRLWDVMIE-KGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNT 508

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN F +   +   F+ + ++ +    PD +T+  ++   C + R+ EA  +  K+   G
Sbjct: 509 LINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKG 568

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
              D  TY  LING     +   A    +EM
Sbjct: 569 INPDRSTYTALINGHVTQDNLNEAFRFHDEM 599


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 162/336 (48%), Gaps = 27/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYT 127
            +A  VFD +L  R     +   N     +A+      V S + R+   G   + P  +T
Sbjct: 32  EDARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHT 89

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKL 186
           Y ILI C C+ GR+  GF  LG +++  F  +A+TFT L+K LCA+ R  +A  +   ++
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
               C  DVF+   L+ GLC    +  AL L   MA+  G       PD ++Y+T+I+G 
Sbjct: 150 TELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSA---PDVVSYTTVINGF 206

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            KE  S          ++S  ++M       R+    + +  +I  LCK   +  A E+ 
Sbjct: 207 FKEGDSDK--------AYSTYHEMLDR----RISPDVVTYSSIIAALCKGQAMDKAMEVL 254

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            ++ + G+MPN +TYN ++ G C+  Q  E   +       K++ S G+ PD+ TYN L+
Sbjct: 255 TTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGF------LKKMRSDGVEPDVVTYNSLM 308

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  CK GR +    IF  +      PD  T+ +L++
Sbjct: 309 DYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQ 344



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 153/318 (48%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P    FNIL    AK +  D  + +F ++   GL P+  TY  +I   CK G V    +
Sbjct: 368 HPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAML 427

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              +++    TP+ + +TSLI  LC   +  +A  L  ++   G  L+   +N++I+  C
Sbjct: 428 YFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHC 487

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G  I +  LF+ M       GV  +P+ ITYST+IDG C  AG  +           A
Sbjct: 488 KEGRVIESEKLFDLMV----RIGV--KPNVITYSTLIDGYCL-AGKMD----------EA 530

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
              ++  F  V ++  C+ +  LI+G C++S++  A  LF+ +  +G+ PN++TYNI+++
Sbjct: 531 TKLLSSMFS-VGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQ 589

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL +      T+       L+  +  +G   +L TYNI+++  CK         +F  + 
Sbjct: 590 GLFH------TRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 643

Query: 387 PSCFTPDAVTFTSLIKIL 404
            +    +  TF  +I  L
Sbjct: 644 LTDLQLETRTFNIMIGAL 661



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 134/320 (41%), Gaps = 27/320 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRL---NLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P V S  IL   L         L L   +      G  PD  +Y  +IN F K G     
Sbjct: 156 PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKA 215

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           +     +L    +PD VT++S+I  LC    + +A  + T +   G   +  TYN++++G
Sbjct: 216 YSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHG 275

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
            C +     A+   ++M +         EPD +TY++++D LCK   S           F
Sbjct: 276 YCSSEQPKEAIGFLKKMRSDG------VEPDVVTYNSLMDYLCKNGRST-----EARKIF 324

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            ++ K     P +   C       L+ G      L     L   + R G+ P+   +NIL
Sbjct: 325 DSMTKRGLE-PDIATYC------TLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNIL 377

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I       ++DE        L+F ++   GL P++ TY  +I   CK G V    + F +
Sbjct: 378 ICAYAKQEKVDE------AMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQ 431

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           ++    TP+ + +TSLI  L
Sbjct: 432 MIDEGLTPNIIVYTSLIHSL 451



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 143/336 (42%), Gaps = 32/336 (9%)

Query: 71  NEALCVFDYMLNMRP--SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
            EAL +   M + R   S P V S+  +     K    D   S +  +    + PD  TY
Sbjct: 175 QEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTY 234

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           + +I   CK   +     VL  ++++   P+ +T+ S++   C+  +  EA     K+R 
Sbjct: 235 SSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRS 294

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G E DV TYN+L++ LC+ G +  A  +F+ M           EPD  TY T++ G   
Sbjct: 295 DGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRG------LEPDIATYCTLLQGY-- 346

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIAREL 305
                        A+  AL +M     L+    +  +   F  LI    K  K+  A  +
Sbjct: 347 -------------ATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLV 393

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  + + GL PNVVTY  +I  LC  G +D+        L F+++   GL P++  Y  L
Sbjct: 394 FSKMRQHGLNPNVVTYGAVIGILCKSGSVDD------AMLYFEQMIDEGLTPNIIVYTSL 447

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           I+  C   +      +   +L      + + F S+I
Sbjct: 448 IHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSII 483



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 137/332 (41%), Gaps = 64/332 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP------- 123
           +EA+ VF  M       P V ++  + G L K+   D  +  F+++   GL P       
Sbjct: 388 DEAMLVFSKM-RQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTS 446

Query: 124 --------DRYT--------------------YNILINCFCKMGRVSHGFVVLGRILRSC 155
                   D++                     +N +I+  CK GRV     +   ++R  
Sbjct: 447 LIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIG 506

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             P+ +T+++LI   C   ++ EA  L + +   G + D  TYNTLING CR      AL
Sbjct: 507 VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDAL 566

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CKEAGSANFLGFSCMASFSALNKMAFY 273
            LF+EM +          P+ ITY+ I+ GL   +   +A  L      S + L    + 
Sbjct: 567 ALFKEMVSSG------VSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYN 620

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
                          ++ GLCK +    A  +FQ+L    L     T+NI+I  L   G+
Sbjct: 621 I--------------ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 666

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
            DE K       LF   +S GL P+ +TY ++
Sbjct: 667 NDEAKD------LFVAFSSNGLVPNYWTYRLM 692


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 180/372 (48%), Gaps = 48/372 (12%)

Query: 42  TVKDRA-SLEQFLKERCKSSGEGDITSITPNEALCVFD-YMLNMRPSRPPVTSFNILFGC 99
            V DR   LE+ +  R ++       S++ ++AL +FD ++ + RP+   + +FN L   
Sbjct: 8   AVSDRCLELERIIGARARAG------SLSVDDALKLFDEFLHHARPA--SIIAFNQLLAA 59

Query: 100 LAKTKHY------DTVLSLFKRLNL---TGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
           ++           + V+S F R+     + + PD +TY+IL+ CFC+MGR+ HGF   G 
Sbjct: 60  VSSASRRGSSSTSELVVSCFNRMIRDCCSKVAPDVFTYSILVGCFCRMGRLEHGFAAFGL 119

Query: 151 ILRSCF-TPDAVTFTSLIKDLCAESRIMEA-AALFTKLRVFGCELDVFTYNTLINGLCRT 208
           IL++ +   D V    L+K LC   R+ EA   L  ++   GC  +V +YNTL+ G C  
Sbjct: 120 ILKTGWRVNDVVVVNRLLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDE 179

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                AL L   MA+G       C P+ ++Y+T+I+G   E                 ++
Sbjct: 180 NRAEEALELLHMMADGQVR---SCPPNLVSYNTVINGFFTEG---------------QVD 221

Query: 269 KMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           K    F  +  Q +    + +  +IDGLCK   +  A  +FQ +   G+ PN+VTY  LI
Sbjct: 222 KAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLI 281

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G  + GQ  E      V  + K +++ GL PD +TY +L++  CK G+ +    +F  +
Sbjct: 282 HGYLSIGQWKE------VVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSM 335

Query: 386 LPSCFTPDAVTF 397
           +     PD   +
Sbjct: 336 IRKGIKPDVSIY 347



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 143/340 (42%), Gaps = 59/340 (17%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNI+F   AK       + +F ++   GL P+   Y  LI+  CK+GRV    +   +++
Sbjct: 382 FNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMI 441

Query: 153 RSCFTPDAVTFTSLIK-----------------------------------DLCAESRIM 177
                P+ V FTSL+                                    +LC E R+M
Sbjct: 442 NEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVM 501

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           +A  L   +   G   D+ +YN LI G C  G T  A  L + M        V  +P+  
Sbjct: 502 KAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIM------LSVGLKPNEC 555

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           TY+T++ G C++    +        ++S   +M        +  + + +  ++ GL K  
Sbjct: 556 TYNTLLHGYCRDGRIDD--------AYSVFQEMLSN----GITPVVVTYNTILHGLFKTR 603

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           +   A+EL+ ++  +G   ++ TYNI++ GL  +  +DE         +F+ L S  L  
Sbjct: 604 RFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEA------LKMFQSLCSKDLQV 657

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           D+ T+NI+I    K GR      +F  I  +   PD  T+
Sbjct: 658 DIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTY 697



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 146/356 (41%), Gaps = 37/356 (10%)

Query: 72  EALCVFDYMLN--MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           EAL +   M +  +R   P + S+N +          D   +LF  +   G+ P+  TY 
Sbjct: 184 EALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYT 243

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           I+I+  CK   V     V  +++     P+ VT+T LI    +  +  E   +  ++   
Sbjct: 244 IVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAH 303

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G E D FTY  L++ LC+ G    A  LF+ M           +PD   Y  I+ G   +
Sbjct: 304 GLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKG------IKPDVSIYGIILHGYATK 357

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLV--------------------RVQCL---CLNF 286
              +    F  +   + ++   + F +V                    R Q L    +N+
Sbjct: 358 GALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNY 417

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LID LCK+ ++  A   F  +   G+ PN+V +  L+ GLC          +E    L
Sbjct: 418 ATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCT------IDKWEKAGEL 471

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           F  + + G+ P++  +N ++   C  GRV     +   +      PD +++ +LI+
Sbjct: 472 FFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIR 527



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 152/335 (45%), Gaps = 27/335 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A   F+ M+N     P +  F  L   L     ++    LF  +   G+ P+   +N 
Sbjct: 431 DDAELKFNQMIN-EGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNT 489

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++   C  GRV     ++  + R    PD +++ +LI+  C   +  EA+ L   +   G
Sbjct: 490 IMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVG 549

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            + +  TYNTL++G CR G    A ++F+EM +NG         P  +TY+TI+ GL K 
Sbjct: 550 LKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNG-------ITPVVVTYNTILHGLFK- 601

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                         FS   ++         Q     +  +++GL K + +  A ++FQSL
Sbjct: 602 -----------TRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSL 650

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
               L  +++T+NI+I  L  DG+ ++  +      LF  +++ GL PD+ TY ++    
Sbjct: 651 CSKDLQVDIITFNIMIGALLKDGRKEDAMN------LFATISANGLVPDVTTYRLIAENL 704

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            + G +     +F  +  S   P+++    L++ L
Sbjct: 705 IEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRL 739



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 133/317 (41%), Gaps = 24/317 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V  FN +   L           L   +   G  PD  +YN LI   C +G+      
Sbjct: 481 HPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASK 540

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +L     P+  T+ +L+   C + RI +A ++F ++   G    V TYNT+++GL 
Sbjct: 541 LLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLF 600

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +T     A  L+  M     ++ +       TY+ I++GL K          +C+    A
Sbjct: 601 KTRRFSEAKELYLNMITSGKQWSIY------TYNIILNGLSKN---------NCVD--EA 643

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L KM        +Q   + F  +I  L K  + + A  LF ++   GL+P+V TY ++  
Sbjct: 644 L-KMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAE 702

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            L  +G ++E         +F  +  +G  P+    N L+      G +S       +I 
Sbjct: 703 NLIEEGSLEEFDG------MFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYLSKID 756

Query: 387 PSCFTPDAVTFTSLIKI 403
              F+ +A T + LI +
Sbjct: 757 EKNFSLEASTTSMLISL 773



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 1/145 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F  + + +  +  + +FNI+ G L K    +  ++LF  ++  GL PD  TY +
Sbjct: 641 DEALKMFQSLCS-KDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRL 699

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +     + G +     +   + +S   P+++    L++ L     I  A A  +K+    
Sbjct: 700 IAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYLSKIDEKN 759

Query: 191 CELDVFTYNTLINGLCRTGHTIVAL 215
             L+  T + LI+   R  H   +L
Sbjct: 760 FSLEASTTSMLISLFSREEHQAKSL 784


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 155/334 (46%), Gaps = 29/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  +F   +  R  RP V SFN L     K+ + D    L + +    +FPD +TY++
Sbjct: 242 NEAQLLFGE-IGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSV 300

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK G++     +   +      P+ VTFT+LI   C   R      ++ ++   G
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKG 360

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV TYNTLINGLC+ G    A  L  EM           +PD  TY+ +IDG CKE 
Sbjct: 361 VKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG------LKPDKFTYTMLIDGCCKEG 414

Query: 251 G--SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
              SA  +    +     L+ +AF                LI G C+  ++  A    + 
Sbjct: 415 DLESALEIRKEMVKEGIELDNVAF--------------TALISGFCREGQVIEAERTLRE 460

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +  AG+ P+  TY ++I G C  G +      +T F L K +   G  P + TYN+L+N 
Sbjct: 461 MLEAGIKPDDATYTMVIHGFCKKGDV------KTGFKLLKEMQCDGHVPGVVTYNVLLNG 514

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            CK G++ +  ++   +L     PD +T+  L++
Sbjct: 515 LCKQGQMKNANMLLDAMLNLGVVPDDITYNILLE 548



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 150/317 (47%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  FN+L   L K    +    LF  +   GL P   ++N LIN +CK G +  GF +
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRL 282

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++ +   PD  T++ LI  LC E ++ +A  LF ++   G   +  T+ TLING C 
Sbjct: 283 KRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCV 342

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           TG   + + ++++M       GV  +PD ITY+T+I+GLCK            +      
Sbjct: 343 TGRADLGMEIYQQMLRK----GV--KPDVITYNTLINGLCK------------VGDLREA 384

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K+        ++     +  LIDG CK   L+ A E+ + + + G+  + V +  LI G
Sbjct: 385 KKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISG 444

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C +GQ+ E +         + +   G+ PD  TY ++I+ FCK G V +GF +   +  
Sbjct: 445 FCREGQVIEAER------TLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQC 498

Query: 388 SCFTPDAVTFTSLIKIL 404
               P  VT+  L+  L
Sbjct: 499 DGHVPGVVTYNVLLNGL 515



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 144/331 (43%), Gaps = 24/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A  VF  +L  R +      F++L      + ++   +  F+ +    L    ++   
Sbjct: 136 NSASSVFTSVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGY 195

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L +   K+   S  +     IL   + PD   F  L+  LC E +I EA  LF ++   G
Sbjct: 196 LFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRG 255

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
               V ++NTLING C++G+      L   M   N  F     PD  TYS +I+GLCKE 
Sbjct: 256 LRPTVVSFNTLINGYCKSGNLDQGFRLKRFMME-NRVF-----PDVFTYSVLINGLCKE- 308

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                            NK+        +    + F  LI+G C   +  +  E++Q + 
Sbjct: 309 -----------GQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQML 357

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R G+ P+V+TYN LI GLC  G + E K       L   +   GL PD +TY +LI+  C
Sbjct: 358 RKGVKPDVITYNTLINGLCKVGDLREAKK------LVIEMTQRGLKPDKFTYTMLIDGCC 411

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G + S   I   ++      D V FT+LI
Sbjct: 412 KEGDLESALEIRKEMVKEGIELDNVAFTALI 442



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 132/311 (42%), Gaps = 56/311 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++++L   L K    D    LF  +   GL P+  T+  LIN  C  GR   G  +
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEI 352

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++LR    PD +T+ +LI  LC    + EA  L  ++   G + D FTY  LI+G C+
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCK 412

Query: 208 TGHTIVALNLFEEMANGNGEF---------------GVVCE--------------PDAIT 238
            G    AL + +EM     E                G V E              PD  T
Sbjct: 413 EGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDAT 472

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMA--FYFPLVRVQCLCLNFLCLIDGLCKI 296
           Y+ +I G CK+              F  L +M    + P V      + +  L++GLCK 
Sbjct: 473 YTMVIHGFCKKG--------DVKTGFKLLKEMQCDGHVPGV------VTYNVLLNGLCKQ 518

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS-TGL 355
            ++K A  L  ++   G++P+ +TYNIL+ G C  G  ++          F +L S  GL
Sbjct: 519 GQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGNRED----------FDKLQSEKGL 568

Query: 356 FPDLYTYNILI 366
             D  +Y  LI
Sbjct: 569 VQDYGSYTSLI 579



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 6/175 (3%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R  +P   ++ +L     K    ++ L + K +   G+  D   +  LI+ FC+ G+
Sbjct: 391 MTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQ 450

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V      L  +L +   PD  T+T +I   C +  +     L  +++  G    V TYN 
Sbjct: 451 VIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNV 510

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           L+NGLC+ G    A  L + M N     GVV  PD ITY+ +++G CK     +F
Sbjct: 511 LLNGLCKQGQMKNANMLLDAMLN----LGVV--PDDITYNILLEGHCKHGNREDF 559


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 154/322 (47%), Gaps = 32/322 (9%)

Query: 88  PPVTSFNILFGCLAKTKH-YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           P V S NIL   L K +   ++   LF+ +   G  PD YTY  LIN  CK+G++S    
Sbjct: 153 PTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKE 212

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +     +P  V++TSLI  LC  + + EA  L  ++ + G E +VFTY++L++GLC
Sbjct: 213 LLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLC 272

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           ++GH+  A+ L E M            P+ +TYST+I+GLCKE      +          
Sbjct: 273 KSGHSSQAMELLEVMVRRR------LLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQG 326

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN-------VV 319
           L   A  +  +            I GLC     + A      +   G+ PN       V 
Sbjct: 327 LKPDAGMYGRI------------ISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVK 374

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            +N++++GLCN+  +D T+     F L+  + + G+  ++ T++ L+ CFCK G ++   
Sbjct: 375 MHNMVVQGLCNN--VDPTR----AFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAA 428

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            I   ++     PD   +  L+
Sbjct: 429 RILEEMILDGCIPDEGMWNVLM 450



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 25/245 (10%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI-VALN 216
           P   ++ ++   L  E+ +  A   + ++R  G    V + N LI  LC+   T+  A  
Sbjct: 118 PTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFR 177

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           LF EM N        C+PD+ TY T+I+GLCK            +   S   ++      
Sbjct: 178 LFREMPNRG------CQPDSYTYGTLINGLCK------------LGKISQAKELLDEMEE 219

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
             +    +++  LI GLC+ + L  A EL + +   G+ PNV TY+ L+ GLC  G    
Sbjct: 220 KGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSG---- 275

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
             H      L + +    L P++ TY+ LIN  CK G+      I  R+      PDA  
Sbjct: 276 --HSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGM 333

Query: 397 FTSLI 401
           +  +I
Sbjct: 334 YGRII 338


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 159/337 (47%), Gaps = 28/337 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++ + +F+  +  R   P V SFN++   + +       L L +R+N  G  PD  T+NI
Sbjct: 230 HDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 289

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +++  C+   VS G  VL R+ R     P+ VTFTS+I   C   ++ +A A++  +   
Sbjct: 290 IVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 349

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +  TYN LING  + G    A+ ++++M        + C PD +T+S++IDG C+ 
Sbjct: 350 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR------LRCPPDVVTFSSLIDGYCRC 403

Query: 250 AGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
               + L  +S MA               R+Q     F  +I  LCK ++   A  L   
Sbjct: 404 GQLDDALRIWSDMAQH-------------RIQPNVYTFSIIIHSLCKQNRSDEAIRLLNE 450

Query: 309 LP-RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           L  R  + P    YN +I  LC  G++DE        L+ K +   G  PD YTY ILI 
Sbjct: 451 LNLRPDIAPQAFIYNPVIDVLCKCGKVDEAN------LIRKGMEEKGCRPDKYTYTILII 504

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +C   R+S   + F  ++ +  +PD++T    I  L
Sbjct: 505 GYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCL 541



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 166/401 (41%), Gaps = 57/401 (14%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYD 107
           S +Q +   C+S  + D        AL +FD M       P     + L          D
Sbjct: 144 SCQQIIVVLCRSGRQAD--------ALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLD 195

Query: 108 TVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSL 166
              +L  + +  G   + Y YN L++     GRV     +  R ++   ++PD  +F  +
Sbjct: 196 ASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVV 255

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           IK +C   ++ +A  L  ++  FGC  D  T+N +++GLCRT        +   +     
Sbjct: 256 IKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDG- 314

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGF--SCMASFSALNKMAF------------ 272
               VC P+ +T++++I G CK     + +      +AS    N + +            
Sbjct: 315 ----VCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGD 370

Query: 273 -------YFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
                  Y  + R++C    + F  LIDG C+  +L  A  ++  + +  + PNV T++I
Sbjct: 371 LGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSI 430

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL----YTYNILINCFCKIGRVSSGF 379
           +I  LC   + DE           + LN   L PD+    + YN +I+  CK G+V    
Sbjct: 431 IIHSLCKQNRSDEA---------IRLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEAN 481

Query: 380 VIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           +I   +      PD  T+T LI       +I E   FF ++
Sbjct: 482 LIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEM 522



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 147/339 (43%), Gaps = 68/339 (20%)

Query: 108 TVLSLFKRLNLTGLF--PDRYTYNILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVTFT 164
           + L++F  L+ + L   P  ++   +I   C+ GR +    +  ++     ++PDA  F 
Sbjct: 123 SALAVFTALHCSPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDA-RFL 181

Query: 165 SLIKDLCAESRIMEAAA-LFTKLRVFGCELDVFTYNTL---------------------- 201
           S +   C  + +++A+A L +K   FGC ++ + YN L                      
Sbjct: 182 SFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQ 241

Query: 202 --------------INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
                         I G+CR G    AL L E M     EFG  C PD +T++ I+DGLC
Sbjct: 242 DRLYSPDVWSFNVVIKGVCRVGQVQKALELVERM----NEFG--CSPDTVTHNIIVDGLC 295

Query: 248 K--EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           +  E    + +          L +     P V      + F  +I G CK  KL+ A  +
Sbjct: 296 RTNEVSRGHEV-------LRRLQRDGVCMPNV------VTFTSVISGYCKAGKLEDAMAV 342

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           +  +  +G+MPN VTYN+LI G    G++ +      V+    RL      PD+ T++ L
Sbjct: 343 YNDMVASGIMPNTVTYNVLINGY---GKVGDLGSAVEVYQQMTRLRCP---PDVVTFSSL 396

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           I+ +C+ G++     I+  +      P+  TF+ +I  L
Sbjct: 397 IDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSL 435



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 112/254 (44%), Gaps = 21/254 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F  +     K    +  ++++  +  +G+ P+  TYN+LIN + K+G +     V
Sbjct: 318 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 377

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++ R    PD VTF+SLI   C   ++ +A  +++ +     + +V+T++ +I+ LC+
Sbjct: 378 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 437

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
              +  A+ L  E+ N   +      P A  Y+ +ID LCK  +   AN +         
Sbjct: 438 QNRSDEAIRLLNEL-NLRPDIA----PQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGC 492

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             +K  +                LI G C  S++  A   F  +  AG  P+ +T N  I
Sbjct: 493 RPDKYTYTI--------------LIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFI 538

Query: 326 RGLCNDGQMDETKH 339
             L   G  +E  H
Sbjct: 539 SCLLKAGMPNEVDH 552


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 160/357 (44%), Gaps = 44/357 (12%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M  M  S P V ++N L     K    + V  L   +  +G   D  TYN L
Sbjct: 218 EARALFVRMKAMGCS-PDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNAL 276

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           INCF K GR+   +   G + R     + VTF++ +   C E  + EA  LF ++RV G 
Sbjct: 277 INCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGM 336

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             + FTY +L++G C+ G    A+ L +EM +     G+V  P+ +TY+ ++DGLCKE  
Sbjct: 337 MPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQ----GLV--PNVVTYTVMVDGLCKEGK 390

Query: 252 SA---------------------------NFLGFSCMASFSALNKMAFYFPLVRVQCLCL 284
            A                           +F+  +   +   LN+M      + V     
Sbjct: 391 VAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSL--- 447

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  LI GLCK  K+  A+ L   +   GL PN V Y  ++  L   G     K  E V 
Sbjct: 448 -YGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAG-----KESEAVA 501

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LL K L+S G  P++ TY  LI+  CK G +S     F ++      P+   +T+LI
Sbjct: 502 LLHKILDS-GFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALI 557



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 162/369 (43%), Gaps = 38/369 (10%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSR------------PPVTS 92
           D   +EQ + E  KS    D+  +T N  +  F     M  +               V +
Sbjct: 250 DLEEVEQLVSEMRKSGCAADV--VTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVT 307

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           F+       K       + LF ++ + G+ P+ +TY  L++  CK GR+    V+L  ++
Sbjct: 308 FSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMV 367

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                P+ VT+T ++  LC E ++ EA  + + +   G + +   Y TLI+G     ++ 
Sbjct: 368 HQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSE 427

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            AL+L  +M N   E       D   Y T+I GLCK+             + S L+KMA 
Sbjct: 428 RALDLLNQMKNKGMEL------DVSLYGTLIWGLCKDQ--------KVDEAKSLLHKMAG 473

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                 ++   + +  ++D L K  K   A  L   +  +G  PNVVTY  LI GLC  G
Sbjct: 474 ----CGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAG 529

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
            + E   +      F ++   GL P++  Y  LI+ FCKIG ++    +   ++    + 
Sbjct: 530 SISEAISH------FNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSL 583

Query: 393 DAVTFTSLI 401
           D V +TSLI
Sbjct: 584 DKVVYTSLI 592



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 124/276 (44%), Gaps = 19/276 (6%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
            G   +     AL + + M N +     V+ +  L   L K +  D   SL  ++   GL
Sbjct: 418 HGHFMNNNSERALDLLNQMKN-KGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGL 476

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+   Y  +++   K G+ S    +L +IL S F P+ VT+ +LI  LC    I EA +
Sbjct: 477 RPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAIS 536

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
            F K+R  G + +V  Y  LI+G C+ G    A++L  EM +           D + Y++
Sbjct: 537 HFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSL------DKVVYTS 590

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +IDG  K+A   +        +F+   KM      + + C    + C I G C ++ ++ 
Sbjct: 591 LIDGYMKQANLQD--------AFALKTKMIESGLQLDLYC----YTCFISGFCNMNMMQE 638

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           AR +   +   G+ P+   YN LIR     G M+E 
Sbjct: 639 ARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEA 674



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 126/296 (42%), Gaps = 33/296 (11%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           +  L L  ++   G+  D   Y  LI   CK  +V     +L ++      P+ V +T++
Sbjct: 427 ERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTI 486

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           +  L    +  EA AL  K+   G + +V TY  LI+GLC+ G    A++ F +M     
Sbjct: 487 MDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMR---- 542

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN- 285
           E G+  +P+   Y+ +IDG CK                 +LNK       +  + + L+ 
Sbjct: 543 ELGL--DPNVQAYTALIDGFCK---------------IGSLNKAMHLMNEMIDKGMSLDK 585

Query: 286 --FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             +  LIDG  K + L+ A  L   +  +GL  ++  Y   I G CN   M E +     
Sbjct: 586 VVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARG---- 641

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI---FGRILPSCFTPDAVT 396
             +   +  TG+ PD   YN LI  + K+G +     +      +L SC   D  +
Sbjct: 642 --VLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMESVLSSCTEDDTAS 695



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 29/197 (14%)

Query: 228 FGVVCEPDAITYSTIIDGLCKEA----GSANFL---GFSCMASFSALNKMAFYF----PL 276
           F ++  P+  T++ +ID LCKE       A F+      C       N +   +     L
Sbjct: 192 FDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDL 251

Query: 277 VRVQCL------------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             V+ L             + +  LI+   K  +++ A   F  + R G++ NVVT++  
Sbjct: 252 EEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTF 311

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           +   C +G + E         LF ++   G+ P+ +TY  L++  CK GR+    V+   
Sbjct: 312 VDAFCKEGLVQEA------MKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDE 365

Query: 385 ILPSCFTPDAVTFTSLI 401
           ++     P+ VT+T ++
Sbjct: 366 MVHQGLVPNVVTYTVMV 382



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 33/130 (25%)

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK---------------------- 338
           + R LF  LP    +PNV T+NI+I  LC +G++ E +                      
Sbjct: 187 LVRRLFDLLP----VPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLI 242

Query: 339 -------HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
                    E V  L   +  +G   D+ TYN LINCF K GR+   +  FG +      
Sbjct: 243 DGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVV 302

Query: 392 PDAVTFTSLI 401
            + VTF++ +
Sbjct: 303 ANVVTFSTFV 312



 Score = 38.9 bits (89), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A+ + + M++   S   V   +++ G + +    D   +L  ++  +GL  D Y Y  
Sbjct: 567 NKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDA-FALKTKMIESGLQLDLYCYTC 625

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
            I+ FC M  +     VL  ++ +  TPD   +  LI+       + EA++L  ++ 
Sbjct: 626 FISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEME 682


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 28/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYT 127
            +A  VFD +L  R     +   N     +A+      V S + R+   G   + P+  T
Sbjct: 36  EDARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCT 93

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKL 186
           Y IL+   C  GR+  GF  LG +++  F  DA+ FT ++K LCA+ R  +A  +   ++
Sbjct: 94  YGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRM 153

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              GC  +VF+YN L+ GLC    +  AL L + M +  G+    C PD ++Y+T+I+G 
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGF 209

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            KE             ++   ++M     L  V    + +  +I  LCK   +  A E+ 
Sbjct: 210 FKEG--------DLDKAYGTYHEMLDRGILPNV----VTYSSIIAALCKAQAMDKAMEVL 257

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            S+ + G+MPN  TYN ++ G C+ GQ  E   +       K+++S G+ PD+ TYN L+
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF------LKKMHSDGVEPDVVTYNSLM 311

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  CK GR +    +F  +      P+  T+ +L++
Sbjct: 312 DYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQ 347



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 146/318 (45%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P    F+IL    AK    D  + +F ++   GL PD  TY  +I   CK GRV     
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              +++    +P  + + SLI  LC   +  +A  L  ++   G  LD   +N++I+  C
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHC 490

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G  I +  LF+ M       GV  +PD ITYST+IDG C                   
Sbjct: 491 KEGRVIESEKLFDLMV----RIGV--KPDIITYSTLIDGYC------------LAGKMDE 532

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             K+      V ++  C+ +  LI+G CKIS+++ A  LF+ +  +G+ P+++TYNI+++
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL       +T+       L+  +  +G   +L TYNI+++  CK         +F  + 
Sbjct: 593 GLF------QTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 646

Query: 387 PSCFTPDAVTFTSLIKIL 404
            +    +  TF  +I  L
Sbjct: 647 LTDLQLETRTFNIMIGAL 664



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 135/305 (44%), Gaps = 29/305 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+  F+ M++ R S P    +N L   L     +D    L   +   G+  D   +N 
Sbjct: 426 EDAMRYFEQMIDERLS-PGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK GRV     +   ++R    PD +T+++LI   C   ++ EA  L   +   G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CK 248
            + D  TYNTLING C+      AL LF EM +     GV   PD ITY+ I+ GL   +
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESS----GV--SPDIITYNIILQGLFQTR 598

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
              +A  L      S + L    +                ++ GLCK +    A  +FQ+
Sbjct: 599 RTAAAKELYVGITESGTQLELSTYNI--------------ILHGLCKNNLTDEALRMFQN 644

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L    L     T+NI+I  L   G+ DE K       LF  L++ GL PD+ TY+++   
Sbjct: 645 LCLTDLQLETRTFNIMIGALLKVGRNDEAKD------LFAALSANGLVPDVRTYSLMAEN 698

Query: 369 FCKIG 373
             + G
Sbjct: 699 LIEQG 703



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 149/379 (39%), Gaps = 63/379 (16%)

Query: 80  MLNMRPSR-----PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           +L M P       P V S+  +     K    D     +  +   G+ P+  TY+ +I  
Sbjct: 184 LLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAA 243

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            CK   +     VL  ++++   P+  T+ S++   C+  +  EA     K+   G E D
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           V TYN+L++ LC+ G    A  +F+ M           +P+  TY T++ G   +     
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKRG------LKPEITTYGTLLQGYATKGALVE 357

Query: 255 FLG----------------FSCM----ASFSALNKMAFYFPLVRVQCL---CLNFLCLID 291
             G                FS +    A    +++    F  +R Q L    + +  +I 
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH-----------Y 340
            LCK  +++ A   F+ +    L P  + YN LI  LC   + D+ K             
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL 477

Query: 341 ETVFL------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           +T+F                   LF  +   G+ PD+ TY+ LI+ +C  G++     + 
Sbjct: 478 DTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLL 537

Query: 383 GRILPSCFTPDAVTFTSLI 401
             ++     PD VT+ +LI
Sbjct: 538 ASMVSVGMKPDCVTYNTLI 556


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 156/343 (45%), Gaps = 47/343 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  L   L + + ++   S+F+ +   G  P+ ++Y+ILI   C+  +V     +
Sbjct: 50  PNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAEL 109

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     P+ VT+ SL+  LC   ++ EA  LF+++   GC  D   YN LI+G  +
Sbjct: 110 LNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSK 169

Query: 208 TGHTIVALNLFEEMANGN------------------GEFGVV-----------CEPDAIT 238
            G    A  LFEEM                      GEFG V           C P+  T
Sbjct: 170 KGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFT 229

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           ++ ++DG CK            M      +++      +      +++  L+ G+C   K
Sbjct: 230 FNNLLDGFCK------------MGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGK 277

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
              A+ L + + R+G+ P++V+YNILI G    G +D          LF  +  +GL PD
Sbjct: 278 PHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHA------IKLFYEIPKSGLEPD 331

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            ++Y+ +I+C C+ G+V + FV+F  ++ +   PDA     L+
Sbjct: 332 AFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLV 374



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 133/292 (45%), Gaps = 35/292 (11%)

Query: 60  SGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT 119
           S +GD+      EA  +F+ ML  +   P V ++N L    ++   +  V SLFK +   
Sbjct: 168 SKKGDM-----GEAYRLFEEMLE-KGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQ 221

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  P+ +T+N L++ FCKMG +     +   +      PD V++ +L++ +C++ +  EA
Sbjct: 222 GCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEA 281

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L  ++   G   D+ +YN LI+G  ++G    A+ LF E+           EPDA +Y
Sbjct: 282 QRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSG------LEPDAFSY 335

Query: 240 STIIDGLCKEAG-SANFLGFSCMASFSALNKMAFYFPLV--------------------R 278
           STIID LC+     A F+ F  M +  +    A   PLV                    +
Sbjct: 336 STIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVK 395

Query: 279 VQCLCL--NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
            +C+ L   +  L+  LCK  +     E+F  L   G  P+V    +++  L
Sbjct: 396 FECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETL 447



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 108/248 (43%), Gaps = 28/248 (11%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           +    +++  L++ L    R       +  +   GC  + +TY  L+  LC+      A 
Sbjct: 13  YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEAR 72

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM--AFY 273
           ++F  MA         C P+  +YS +I GLC+        G     +   LN+M    +
Sbjct: 73  SVFRGMAAQG------CSPNVFSYSILIAGLCR--------GQKVDEAAELLNEMIDGGH 118

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
            P V      + +  L+ GLCK+ KLK A +LF  +   G  P+ V YN+LI G    G 
Sbjct: 119 QPNV------VTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGD 172

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           M E       + LF+ +   G  P ++TYN L++ F + G       +F  +L     P+
Sbjct: 173 MGEA------YRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPN 226

Query: 394 AVTFTSLI 401
             TF +L+
Sbjct: 227 IFTFNNLL 234


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 144/314 (45%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FN L   L +T H    L +   +   G   D YTYN LI+  CK+G +     +
Sbjct: 300 PDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEI 359

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     P+ VT+ +LI  LC E+ +  A  L   L   G   DV T+N+LI GLC 
Sbjct: 360 LHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCL 419

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           T +  +A+ LFEEM          C+PD  TYS +I+ LC E      L        S  
Sbjct: 420 TSNREIAMELFEEMKEKG------CDPDEFTYSILIESLCSERRLKEALMLLKEMELSGC 473

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +    +              LIDGLCK +++  A ++F  +   G+  + VTYN LI G
Sbjct: 474 ARNVVVYN------------TLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLING 521

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC   +++E         L  ++   GL PD +TY  ++  FC+ G +     I   +  
Sbjct: 522 LCKSKRVEEAAQ------LMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTL 575

Query: 388 SCFTPDAVTFTSLI 401
           +   PD VT+ +LI
Sbjct: 576 NGCEPDIVTYGTLI 589



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 158/374 (42%), Gaps = 74/374 (19%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY------------------- 128
           P V++FNIL   L K       + + + +   GL PD  T+                   
Sbjct: 197 PDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRI 256

Query: 129 ----------------NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
                           N+L+N  CK GR+      +       F PD VTF +L+  LC 
Sbjct: 257 KELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNALVNGLCR 314

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
              I +   +   +   G ELDV+TYN+LI+GLC+ G    A+ +   M + +      C
Sbjct: 315 TGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRD------C 368

Query: 233 EPDAITYSTIIDGLCKE--AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN----- 285
           EP+ +TY+T+I  LCKE    +A  L    + S   L  +  +  L++  CL  N     
Sbjct: 369 EPNTVTYNTLIGTLCKENHVEAATELA-RVLTSKGVLPDVCTFNSLIQGLCLTSNREIAM 427

Query: 286 -----------------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
                            +  LI+ LC   +LK A  L + +  +G   NVV YN LI GL
Sbjct: 428 ELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGL 487

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C + ++ + +       +F ++   G+     TYN LIN  CK  RV     +  +++  
Sbjct: 488 CKNNRVGDAED------IFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIME 541

Query: 389 CFTPDAVTFTSLIK 402
              PD  T+T+++K
Sbjct: 542 GLKPDKFTYTTMLK 555



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 143/327 (43%), Gaps = 25/327 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +  +M++ R   P   ++N L G L K  H +    L + L   G+ PD  T+N 
Sbjct: 354 DEAVEILHHMVS-RDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNS 412

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   C          +   +      PD  T++ LI+ LC+E R+ EA  L  ++ + G
Sbjct: 413 LIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSG 472

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V  YNTLI+GLC+      A ++F++M       GV     ++TY+T+I+GLCK  
Sbjct: 473 CARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEM----LGV--SRSSVTYNTLINGLCKSK 526

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                           L    F             +  ++   C+   +K A ++ Q++ 
Sbjct: 527 RVEEAAQLMDQMIMEGLKPDKF------------TYTTMLKYFCQQGDIKRAADIVQNMT 574

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P++VTY  LI GLC  G++D          L + +   G+      YN +I   C
Sbjct: 575 LNGCEPDIVTYGTLIGGLCKAGRVDVASK------LLRSVQMKGMVLTPQAYNPVIQALC 628

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTF 397
           K  R      +F  ++     PD +T+
Sbjct: 629 KRKRTKEAMRLFREMMEKGDPPDVITY 655



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 143/333 (42%), Gaps = 52/333 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA      +L  +   P V +FN L   L  T + +  + LF+ +   G  PD +TY+IL
Sbjct: 389 EAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSIL 448

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I   C   R+    ++L  +  S    + V + +LI  LC  +R+ +A  +F ++ + G 
Sbjct: 449 IESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGV 508

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEM--------------------ANGNGEFGVV 231
                TYNTLINGLC++     A  L ++M                      G+ +    
Sbjct: 509 SRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAAD 568

Query: 232 ---------CEPDAITYSTIIDGLCKEAGS---ANFLGFSCMASFSALNKMAFYFPLVRV 279
                    CEPD +TY T+I GLCK AG    A+ L  S       L   A Y P+   
Sbjct: 569 IVQNMTLNGCEPDIVTYGTLIGGLCK-AGRVDVASKLLRSVQMKGMVLTPQA-YNPV--- 623

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                     I  LCK  + K A  LF+ +   G  P+V+TY I+ RGLCN G   +   
Sbjct: 624 ----------IQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAV 673

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
             TV +L K     G+ P+  ++  L    C +
Sbjct: 674 DFTVEMLEK-----GILPEFPSFGFLAEGLCSL 701



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 134/318 (42%), Gaps = 26/318 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P    +N+    L K      V +L  ++    + PD  T+NILI   CK  ++    +
Sbjct: 161 KPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAIL 220

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +      PD  TFT+L++    E+ +  A  +   +   GCEL   + N L+NGLC
Sbjct: 221 MLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLC 280

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    AL    E      E G    PD +T++ +++GLC+                  
Sbjct: 281 KEGRIEEALRFIYE------EEGFC--PDQVTFNALVNGLCRTGHIKQ-----------G 321

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L  M F       +     +  LI GLCK+ ++  A E+   +      PN VTYN LI 
Sbjct: 322 LEMMDFMLE-KGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIG 380

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC +       H E    L + L S G+ PD+ T+N LI   C          +F  + 
Sbjct: 381 TLCKEN------HVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMK 434

Query: 387 PSCFTPDAVTFTSLIKIL 404
                PD  T++ LI+ L
Sbjct: 435 EKGCDPDEFTYSILIESL 452



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/339 (25%), Positives = 138/339 (40%), Gaps = 40/339 (11%)

Query: 77  FDYML----NMRPSRPPV--TSFNILFGCLAKTKH-YDTVLSLFKRLNLT-GLFPDRYTY 128
           FD ML     M  S+ PV  ++F I     A + H +  +  LF  +     + PD   Y
Sbjct: 108 FDSMLTLLRQMHSSKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFY 167

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N+ ++   K  ++     +  +++     PD  TF  LI+ LC   ++  A  +   +  
Sbjct: 168 NVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPN 227

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           +G   D  T+ TL+ G         AL + E M          CE  +++ + +++GLCK
Sbjct: 228 YGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESG------CELTSVSVNVLVNGLCK 281

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC---LNFLCLIDGLCKISKLKIAREL 305
           E      L F                 +   +  C   + F  L++GLC+   +K   E+
Sbjct: 282 EGRIEEALRF-----------------IYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEM 324

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
              +   G   +V TYN LI GLC  G++DE         +   + S    P+  TYN L
Sbjct: 325 MDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVE------ILHHMVSRDCEPNTVTYNTL 378

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           I   CK   V +   +   +      PD  TF SLI+ L
Sbjct: 379 IGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGL 417



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 90/195 (46%), Gaps = 15/195 (7%)

Query: 57  CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
           CK++  GD   I        FD M  +  SR  VT +N L   L K+K  +    L  ++
Sbjct: 488 CKNNRVGDAEDI--------FDQMEMLGVSRSSVT-YNTLINGLCKSKRVEEAAQLMDQM 538

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
            + GL PD++TY  ++  FC+ G +     ++  +  +   PD VT+ +LI  LC   R+
Sbjct: 539 IMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRV 598

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
             A+ L   +++ G  L    YN +I  LC+   T  A+ LF EM            PD 
Sbjct: 599 DVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGD------PPDV 652

Query: 237 ITYSTIIDGLCKEAG 251
           ITY  +  GLC   G
Sbjct: 653 ITYKIVFRGLCNGGG 667


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 157/337 (46%), Gaps = 34/337 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +AL VF  M   R  RP + ++  +   L K+ H D    LF+ +   GL   R  YN 
Sbjct: 176 EKALKVFLDM-KSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNS 234

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+   + GR      +   +L     PD VTFTSL+  L    R  EA  +F + R  G
Sbjct: 235 LIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVG 294

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C LDV  YN LI+ LC++     A  +F E+     E G+V  PD  T++ ++DGLCK  
Sbjct: 295 CALDVNLYNVLIDTLCKSKRLDEAWEIFGELE----EDGLV--PDVYTFNALMDGLCKSG 348

Query: 251 GSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                       +F  L  M  A   P V V      +  LIDGL K  +++ A +L   
Sbjct: 349 --------RIHDAFILLGDMKRAGCTPDVTV------YNTLIDGLRKSGRVEEAGQLLLE 394

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G  P+VVTYN LI   C  G++      E    LF+ +++ G F +  TYN ++N 
Sbjct: 395 MQSLGYEPDVVTYNTLIDESCKGGRI------EDALRLFEEISAKG-FANTVTYNTILNG 447

Query: 369 FCKIGRVSSGFVIFG----RILPSCFTPDAVTFTSLI 401
            C  GRV   + +F       +     PD VT+T+L+
Sbjct: 448 LCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLL 484



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 157/315 (49%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
            +++N L     K  +    L++++ +  +GL PD YT+N+L+N F K  RV   + +  
Sbjct: 89  ASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFE 148

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +     +P+ +T++ LI  +C    + +A  +F  ++  GC  ++FTY ++I+GL ++G
Sbjct: 149 EMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSG 208

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
           H   A  LFEEM +     G+V     + Y+++I GL + +G A+           A  K
Sbjct: 209 HVDKAFFLFEEMTSE----GLVATR--VVYNSLIHGLGR-SGRAD-----------AAAK 250

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           +        +Q   + F  L+ GL    +   AR +FQ     G   +V  YN+LI  LC
Sbjct: 251 LFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLC 310

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
              ++DE       + +F  L   GL PD+YT+N L++  CK GR+   F++ G +  + 
Sbjct: 311 KSKRLDE------AWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAG 364

Query: 390 FTPDAVTFTSLIKIL 404
            TPD   + +LI  L
Sbjct: 365 CTPDVTVYNTLIDGL 379



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 155/334 (46%), Gaps = 31/334 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +AL V+  M      RP   +FN+L     K K  D+V  LF+ +      P+  TY+I
Sbjct: 106 QKALAVYRVM-GQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSI 164

Query: 131 LINCFCKMGRVSHGF-VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           LI+  CK G V     V L    R C  P+  T+TS+I  L     + +A  LF ++   
Sbjct: 165 LIDAVCKCGGVEKALKVFLDMKSRGC-RPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSE 223

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G       YN+LI+GL R+G    A  LF EM +         +PD +T+++++ G    
Sbjct: 224 GLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKG------LQPDHVTFTSLVYG---- 273

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQC-LCLN-FLCLIDGLCKISKLKIARELFQ 307
                 LG +  AS         +     V C L +N +  LID LCK  +L  A E+F 
Sbjct: 274 ------LGVAGRAS----EARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFG 323

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            L   GL+P+V T+N L+ GLC  G++ +       F+L   +   G  PD+  YN LI+
Sbjct: 324 ELEEDGLVPDVYTFNALMDGLCKSGRIHD------AFILLGDMKRAGCTPDVTVYNTLID 377

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              K GRV     +   +    + PD VT+ +LI
Sbjct: 378 GLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLI 411



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 96/194 (49%), Gaps = 33/194 (17%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  +N+L   L K+K  D    +F  L   GL PD YT+N L++  CK GR+   F++LG
Sbjct: 299 VNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLG 358

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            + R+  TPD   + +LI  L    R+ EA  L  +++  G E DV TYNTLI+  C+ G
Sbjct: 359 DMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGG 418

Query: 210 HTIVALNLFEEMA------------------------------NGNGEFGV--VCEPDAI 237
               AL LFEE++                              NG  +  V  V +PD +
Sbjct: 419 RIEDALRLFEEISAKGFANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFV 478

Query: 238 TYSTIIDGLCKEAG 251
           TY+T+++G  ++AG
Sbjct: 479 TYTTLLNG-ARQAG 491



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P VT +N L   L K+   +    L   +   G  PD  TYN LI+  CK GR+     +
Sbjct: 367 PDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRL 426

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR---VFGC-ELDVFTYNTLIN 203
              I    F  + VT+ +++  LC   R+ EA  LF  ++   V G  + D  TY TL+N
Sbjct: 427 FEEISAKGF-ANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLN 485

Query: 204 GLCRTGHTIVALNL 217
           G  + G + +A +L
Sbjct: 486 GARQAGLSELANSL 499


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 155/334 (46%), Gaps = 29/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  +F   +  R  RP V SFN L     K+ + D    L + +    +FPD +TY++
Sbjct: 242 NEAQLLFGE-IGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSV 300

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK G++     +   +      P+ VTFT+LI   C   R      ++ ++   G
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKG 360

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV TYNTLINGLC+ G    A  L  EM           +PD  TY+ +IDG CKE 
Sbjct: 361 VKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG------LKPDKFTYTMLIDGCCKEG 414

Query: 251 G--SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
              SA  +    +     L+ +AF                LI G C+  ++  A    + 
Sbjct: 415 DLESALEIRKEMVKEGIELDNVAF--------------TALISGFCREGQVIEAERTLRE 460

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +  AG+ P+  TY ++I G C  G +      +T F L K +   G  P + TYN+L+N 
Sbjct: 461 MLEAGIKPDDATYTMVIHGFCKKGDV------KTGFKLLKEMQCDGHVPGVVTYNVLLNG 514

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            CK G++ +  ++   +L     PD +T+  L++
Sbjct: 515 LCKQGQMKNANMLLDAMLNLGVVPDDITYNILLE 548



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 150/317 (47%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  FN+L   L K    +    LF  +   GL P   ++N LIN +CK G +  GF +
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRL 282

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++ +   PD  T++ LI  LC E ++ +A  LF ++   G   +  T+ TLING C 
Sbjct: 283 KRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCV 342

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           TG   + + ++++M       GV  +PD ITY+T+I+GLCK            +      
Sbjct: 343 TGRADLGMEIYQQMLRK----GV--KPDVITYNTLINGLCK------------VGDLREA 384

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K+        ++     +  LIDG CK   L+ A E+ + + + G+  + V +  LI G
Sbjct: 385 KKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISG 444

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C +GQ+ E +         + +   G+ PD  TY ++I+ FCK G V +GF +   +  
Sbjct: 445 FCREGQVIEAER------TLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQC 498

Query: 388 SCFTPDAVTFTSLIKIL 404
               P  VT+  L+  L
Sbjct: 499 DGHVPGVVTYNVLLNGL 515



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 160/376 (42%), Gaps = 29/376 (7%)

Query: 31  SYPTTTATLRLTVKDRASLEQFL-----KERCKSSGEGDITSITPNEALCVFDYMLNMRP 85
            + +T    RL++    ++  FL         +S  +  ++    N A  VF  +L  R 
Sbjct: 91  KWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARG 150

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           +      F++L      + ++   +  F+ +    L    ++   L +   K+   S  +
Sbjct: 151 THQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAW 210

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
                IL   + PD   F  L+  LC E +I EA  LF ++   G    V ++NTLING 
Sbjct: 211 AFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGY 270

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C++G+      L   M   N  F     PD  TYS +I+GLCKE                
Sbjct: 271 CKSGNLDQGFRLKRFMME-NRVF-----PDVFTYSVLINGLCKE------------GQLD 312

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             NK+        +    + F  LI+G C   +  +  E++Q + R G+ P+V+TYN LI
Sbjct: 313 DANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLI 372

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC  G + E K       L   +   GL PD +TY +LI+  CK G + S   I   +
Sbjct: 373 NGLCKVGDLREAKK------LVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEM 426

Query: 386 LPSCFTPDAVTFTSLI 401
           +      D V FT+LI
Sbjct: 427 VKEGIELDNVAFTALI 442


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 149/299 (49%), Gaps = 25/299 (8%)

Query: 108 TVLSLFKRLNLTG---LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
             +S + R+   G   + P  +TY ILI C C+ GR+  GF  LG +++  F  +A+TFT
Sbjct: 67  AAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFT 126

Query: 165 SLIKDLCAESRIMEAAAL-FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
            L+K LCA+ R  +A  +   ++    C  DVF+   L+ GLC    +  AL L   MA+
Sbjct: 127 PLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMAD 186

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
             G       PD ++Y+T+I+G  KE  S          ++S  ++M       R+    
Sbjct: 187 DRGGGSA---PDVVSYTTVINGFFKEGDSDK--------AYSTYHEMLDR----RISPDV 231

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           + +  +I  LCK   +  A E+  ++ + G+MPN +TYN ++ G C+  Q  E   +   
Sbjct: 232 VTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGF--- 288

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
               K++ S G+ PD+ TYN L++  CK GR +    IF  +      PD  T+ +L++
Sbjct: 289 ---LKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQ 344



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 153/318 (48%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P    FNIL    AK +  D  + +F ++   GL P+  TY  +I   CK G V    +
Sbjct: 368 HPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAML 427

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              +++    TP+ + +TSLI  LC   +  +A  L  ++   G  L+   +N++I+  C
Sbjct: 428 YFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHC 487

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G  I +  LF+ M       GV  +P+ ITYST+IDG C  AG  +           A
Sbjct: 488 KEGRVIESEKLFDLMV----RIGV--KPNVITYSTLIDGYCL-AGKMD----------EA 530

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
              ++  F  V ++  C+ +  LI+G C++S++  A  LF+ +  +G+ PN++TYNI+++
Sbjct: 531 TKLLSSMFS-VGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQ 589

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL +      T+       L+  +  +G   +L TYNI+++  CK         +F  + 
Sbjct: 590 GLFH------TRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 643

Query: 387 PSCFTPDAVTFTSLIKIL 404
            +    +  TF  +I  L
Sbjct: 644 LTDLQLETRTFNIMIGAL 661



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 136/320 (42%), Gaps = 27/320 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRL---NLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P V S  IL   L         L L   +      G  PD  +Y  +IN F K G     
Sbjct: 156 PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKA 215

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           +     +L    +PD VT++S+I  LC    + +A  + T +   G   +  TYN++++G
Sbjct: 216 YSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHG 275

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
            C +     A+   ++M +     GV  EPD +TY++++D LCK   S           F
Sbjct: 276 YCSSEQPKEAIGFLKKMRSD----GV--EPDVVTYNSLMDYLCKNGRSTEARKI-----F 324

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            ++ K     P +   C       L+ G      L     L   + R G+ P+   +NIL
Sbjct: 325 DSMTKRGLE-PDIATYC------TLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNIL 377

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I       ++DE        L+F ++   GL P++ TY  +I   CK G V    + F +
Sbjct: 378 ICAYAKQEKVDE------AMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQ 431

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           ++    TP+ + +TSLI  L
Sbjct: 432 MIDEGLTPNIIVYTSLIHSL 451



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 143/336 (42%), Gaps = 32/336 (9%)

Query: 71  NEALCVFDYMLNMRP--SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
            EAL +   M + R   S P V S+  +     K    D   S +  +    + PD  TY
Sbjct: 175 QEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTY 234

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           + +I   CK   +     VL  ++++   P+ +T+ S++   C+  +  EA     K+R 
Sbjct: 235 SSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRS 294

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G E DV TYN+L++ LC+ G +  A  +F+ M           EPD  TY T++ G   
Sbjct: 295 DGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRG------LEPDIATYCTLLQGY-- 346

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIAREL 305
                        A+  AL +M     L+    +  +   F  LI    K  K+  A  +
Sbjct: 347 -------------ATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLV 393

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  + + GL PNVVTY  +I  LC  G +D+        L F+++   GL P++  Y  L
Sbjct: 394 FSKMRQHGLNPNVVTYGAVIGILCKSGSVDD------AMLYFEQMIDEGLTPNIIVYTSL 447

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           I+  C   +      +   +L      + + F S+I
Sbjct: 448 IHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSII 483



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 143/340 (42%), Gaps = 64/340 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP------- 123
           +EA+ VF  M       P V ++  + G L K+   D  +  F+++   GL P       
Sbjct: 388 DEAMLVFSKM-RQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTS 446

Query: 124 --------DRYT--------------------YNILINCFCKMGRVSHGFVVLGRILRSC 155
                   D++                     +N +I+  CK GRV     +   ++R  
Sbjct: 447 LIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIG 506

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             P+ +T+++LI   C   ++ EA  L + +   G + D  TYNTLING CR      AL
Sbjct: 507 VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDAL 566

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CKEAGSANFLGFSCMASFSALNKMAFY 273
            LF+EM +     GV   P+ ITY+ I+ GL   +   +A  L      S + L    + 
Sbjct: 567 ALFKEMVSS----GV--SPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYN 620

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
                          ++ GLCK +    A  +FQ+L    L     T+NI+I  L   G+
Sbjct: 621 I--------------ILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 666

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
            DE K       LF  L++ GL PD+ TY+++     + G
Sbjct: 667 NDEAKD------LFAALSANGLVPDVRTYSLMAENLIEQG 700


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 177/369 (47%), Gaps = 32/369 (8%)

Query: 41  LTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCL 100
           L+  D   + +F   + +   E        + A   FD +L+ RP+   +   N      
Sbjct: 6   LSAPDGTKVSRFNLMKLQGRQEAAAAGTDSHHAHHAFDELLH-RPTTSSIVDLNRALSDA 64

Query: 101 AKTKHYDTV-LSLFKRLNLTG---LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF 156
           A+  H   V +SLF+R+ +     + P+  TY+++I+C  ++G +   F  LGR++RS +
Sbjct: 65  AR--HSPAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGW 122

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAAL-FTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           T +A+TF+ L+K LC + R  EA  +   ++ V GC  +VF+Y  L+ GLC    +  AL
Sbjct: 123 TAEAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQAL 182

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
           +L   M   +   G    PD ++Y+T+I+GL +E                 L+     F 
Sbjct: 183 HLLHTMMVADDTRGGY-PPDVVSYNTVINGLLREG--------------RQLDTAYHLFD 227

Query: 276 LVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
            +  Q L    + +  +I  L K   +  A  +   + + G MPN +T+N L+ G C+ G
Sbjct: 228 QMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSG 287

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           + ++         +FKR+   G+ PD++TYN L+   CK GR      IF  ++     P
Sbjct: 288 KPNDA------IGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKP 341

Query: 393 DAVTFTSLI 401
           ++ T+ +L+
Sbjct: 342 NSATYGTLL 350



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 152/339 (44%), Gaps = 29/339 (8%)

Query: 71  NEALCVFDYMLNMRPSR----PPVTSFN-ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
            +AL +   M+    +R    P V S+N ++ G L + +  DT   LF ++   GL PD 
Sbjct: 179 QQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDV 238

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            TYN +I+   K   +    VVL R++++   P+ +T  SL+   C+  +  +A  +F +
Sbjct: 239 VTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKR 298

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +   G E DVFTYNTL+  LC+ G ++ A  +F+ M           +P++ TY T++ G
Sbjct: 299 MCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRG------HKPNSATYGTLLHG 352

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
              E           M   + +    + F +            LI    K  K+  A  L
Sbjct: 353 YATEGSLVKMHHLLDMMVRNGIQPDHYIFNI------------LIGTYTKHGKVDDAMLL 400

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  + R GL P+ VTY I++  LC  G++D+          F RL S GL PD   +  L
Sbjct: 401 FSKMRRQGLNPDTVTYGIVMDALCMVGKVDDA------MAQFGRLISEGLTPDAVVFRNL 454

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           I+  C   +      +   ++     P+ + F +L+  L
Sbjct: 455 IHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHL 493



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 160/369 (43%), Gaps = 42/369 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  F  +++   +   V   N++ G  A+ K +D    L   +   G+ P+   +N 
Sbjct: 430 DDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDK-WDKAEELAVEMIGRGICPNNIFFNT 488

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  CK G V+    +   ++R     D +T+ +LI   C   ++ EAA L   + + G
Sbjct: 489 LLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDG 548

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CK 248
            + +  TYNT+ING C+ G    A +LF +MA+          P  +TYSTI+ GL   +
Sbjct: 549 VKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKG------VNPGIVTYSTILQGLFQAR 602

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN----------------------- 285
              +A  L    + S    +   +   L+    LC N                       
Sbjct: 603 RTAAAKELYLWMIKSGIKFDIGTYNIILL---GLCQNNCTDDALRIFQNLYLIDFHLENR 659

Query: 286 -FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            F  +ID L K  +   A++LF SL   GL+PNVVTY ++++ L   G +      E + 
Sbjct: 660 TFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLL------EELD 713

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            LF  L   G   +    N L+    + G V    V   +I  + F+ +A T  SL+ ++
Sbjct: 714 DLFLSLEKNGCTANSRMLNALVGKLLQKGEVRKAGVYLSKIDENNFSLEASTAESLVLLV 773

Query: 405 EINSFFRQV 413
               + + +
Sbjct: 774 SSGKYDQHI 782



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 335 DETKHYETVFL-LFKRLNSTG---LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
           D  +H   V + LF+R+       + P+L TY+++I+C  ++G +   F   GR++ S +
Sbjct: 63  DAARHSPAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGW 122

Query: 391 TPDAVTFTSLIKIL 404
           T +A+TF+ L+K L
Sbjct: 123 TAEAITFSPLLKAL 136


>gi|255661024|gb|ACU25681.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 376

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 158/323 (48%), Gaps = 28/323 (8%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R     V SFNI+   L      D  +S+++ +  +G   D  TY IL++ FCK G  + 
Sbjct: 53  REGSRTVASFNIIMRGLFDNGKVDEAVSIWELMKESGFVEDSTTYGILVHGFCKNGHNNK 112

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              VL    +     DA  ++++I  LC E+++ +A ++   +   GC+ +   YN+LIN
Sbjct: 113 SLHVLEIAEQKGGVLDAFAYSAMINGLCKEAKLDKAISVLNSMTNNGCKPNAHVYNSLIN 172

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GL        A+  F+EM N      + C P  +TY+ +I+GLCK        G     +
Sbjct: 173 GLVGASKYEDAICAFQEMGN------MDCSPTIVTYNXLINGLCK--------GERYAEA 218

Query: 264 FSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
           +  + +M    + P V      + +  L  GLC+  K+++A +L++ +   G  P+V  +
Sbjct: 219 YDLVKQMLEKGFNPSV------ITYSSLFKGLCQGRKVEMALQLWKKVISKGFKPDVQMH 272

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           NILI GLCN G++      E    L+  +N     P+L T N L+  F K G V SG VI
Sbjct: 273 NILIHGLCNVGKI------ELALALYFGMNRWKCSPNLVTLNTLMEGFYKDGDVRSGLVI 326

Query: 382 FGRILPSCFTPDAVTFTSLIKIL 404
           + RIL +   PD +++   +K L
Sbjct: 327 WARILRNELKPDIISYNITLKGL 349



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 54/323 (16%)

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           ++K +    + PD   YN ++N F +  R+   F +   + R   +    +F  +++ L 
Sbjct: 12  VYKEMVERKVSPDAVVYNTMLNGFFRSQRIKDCFELWDLMGREG-SRTVASFNIIMRGLF 70

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
              ++ EA +++  ++  G   D  TY  L++G C+ GH   +L++  E+A   G  GV+
Sbjct: 71  DNGKVDEAVSIWELMKESGFVEDSTTYGILVHGFCKNGHNNKSLHVL-EIAEQKG--GVL 127

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA---------FYFPLVR---- 278
              DA  YS +I+GLCKEA            + S LN M           Y  L+     
Sbjct: 128 ---DAFAYSAMINGLCKEA--------KLDKAISVLNSMTNNGCKPNAHVYNSLINGLVG 176

Query: 279 ----VQCLCL-----NFLC---------LIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                  +C      N  C         LI+GLCK  +   A +L + +   G  P+V+T
Sbjct: 177 ASKYEDAICAFQEMGNMDCSPTIVTYNXLINGLCKGERYAEAYDLVKQMLEKGFNPSVIT 236

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+ L +GLC      + +  E    L+K++ S G  PD+  +NILI+  C +G++     
Sbjct: 237 YSSLFKGLC------QGRKVEMALQLWKKVISKGFKPDVQMHNILIHGLCNVGKIELALA 290

Query: 381 I-FGRILPSCFTPDAVTFTSLIK 402
           + FG     C +P+ VT  +L++
Sbjct: 291 LYFGMNRWKC-SPNLVTLNTLME 312



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 116/269 (43%), Gaps = 25/269 (9%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C++G +S    V   ++    +PDAV + +++       RI +   L+  +   G    V
Sbjct: 1   CELGDISGAERVYKEMVERKVSPDAVVYNTMLNGFFRSQRIKDCFELWDLMGREGSRT-V 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G    A++++E M     E G V   D+ TY  ++ G CK   +   
Sbjct: 60  ASFNIIMRGLFDNGKVDEAVSIWELMK----ESGFV--EDSTTYGILVHGFCKNGHNNKS 113

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L    +A        AF +              +I+GLCK +KL  A  +  S+   G  
Sbjct: 114 LHVLEIAEQKGGVLDAFAYS------------AMINGLCKEAKLDKAISVLNSMTNNGCK 161

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           PN   YN LI GL           YE     F+ + +    P + TYN LIN  CK  R 
Sbjct: 162 PNAHVYNSLINGLVG------ASKYEDAICAFQEMGNMDCSPTIVTYNXLINGLCKGERY 215

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +  + +  ++L   F P  +T++SL K L
Sbjct: 216 AEAYDLVKQMLEKGFNPSVITYSSLFKGL 244



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 7/180 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ V + M N    +P    +N L   L     Y+  +  F+ +      P   TYN 
Sbjct: 146 DKAISVLNSMTN-NGCKPNAHVYNSLINGLVGASKYEDAICAFQEMGNMDCSPTIVTYNX 204

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK  R +  + ++ ++L   F P  +T++SL K LC   ++  A  L+ K+   G
Sbjct: 205 LINGLCKGERYAEAYDLVKQMLEKGFNPSVITYSSLFKGLCQGRKVEMALQLWKKVISKG 264

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV  +N LI+GLC  G   +AL L+  M          C P+ +T +T+++G  K+ 
Sbjct: 265 FKPDVQMHNILIHGLCNVGKIELALALYFGMNRWK------CSPNLVTLNTLMEGFYKDG 318



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 7/176 (3%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+C F  M NM  S P + ++N L   L K + Y     L K++   G  P   TY+ L
Sbjct: 182 DAICAFQEMGNMDCS-PTIVTYNXLINGLCKGERYAEAYDLVKQMLEKGFNPSVITYSSL 240

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
               C+  +V     +  +++   F PD      LI  LC   +I  A AL+  +  + C
Sbjct: 241 FKGLCQGRKVEMALQLWKKVISKGFKPDVQMHNILIHGLCNVGKIELALALYFGMNRWKC 300

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             ++ T NTL+ G  + G     L ++  +           +PD I+Y+  + GLC
Sbjct: 301 SPNLVTLNTLMEGFYKDGDVRSGLVIWARILRNE------LKPDIISYNITLKGLC 350


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 156/343 (45%), Gaps = 48/343 (13%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +FN L   L K +  +  ++  K+++    FP  +TY  L++ F K+GR+    + L   
Sbjct: 256 TFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEA 315

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +   F PDAVT+TS+I  LC   R+ E    F ++R  G E D  TY  LI+G  +    
Sbjct: 316 VERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMI 375

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A  ++ +M       G V     +TY+ I+DGLCK    A        A+F A+ +  
Sbjct: 376 PKAHRVYRQMLQS----GTVVS--TVTYNIILDGLCKAGRVAE-----AYATFLAMEERG 424

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
               +V        +  L+DG C    +  A ELF+ +   G  PN+V+YNI+IRGLC  
Sbjct: 425 CVATVV-------TYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRA 477

Query: 332 GQMDETKHYETVFL------------------------------LFKRLNSTGLFPDLYT 361
           G++ +   Y    L                              LF+ + S G  P+L++
Sbjct: 478 GKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHS 537

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           Y+IL++  C+ G +     IF  ++     PD V F +LI+ L
Sbjct: 538 YSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWL 580



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 150/348 (43%), Gaps = 38/348 (10%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           +L+  P  P + +F ++   L + K  D   S+ +R    G  PD  TYN+ I+  CK  
Sbjct: 31  LLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAE 90

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           RV   F +L ++      P  VT+T+L+  L    R+ EA A+  ++   G    + TY 
Sbjct: 91  RVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYT 150

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----------- 248
            +I+GL + G    A  +F +M  GNG     C PDA  Y+ +I GL K           
Sbjct: 151 VVIDGLSKAGRVEEARRIFVDML-GNG-----CRPDAFVYTALISGLAKIGKLDEALVYL 204

Query: 249 ----EAGSA----------NFLGFSCMASFSALNKMAFYFPL-VRVQCLCLNFLCLIDGL 293
               E G A          N +     AS +  + +A++  L   +      F  L+  L
Sbjct: 205 NQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAAL 264

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK  + + A    + +      P + TY  L+ G    G++DE        L  K     
Sbjct: 265 CKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEA------LLQLKEAVER 318

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G  PD  TY  +I+  CK+GRV  G   F  +    + PDAVT+ +LI
Sbjct: 319 GFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALI 366



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 99/214 (46%), Gaps = 31/214 (14%)

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           +D      L+NGLC+TG    A+ L +EM          C PD + ++ +I+GLC+E   
Sbjct: 7   VDTRVCTALLNGLCKTGQLDRAMLLLDEMP---------CSPDMVAFTVVINGLCREK-- 55

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLP 310
                     +FS L +       VR  C    + +   IDGLCK  ++  A +L + + 
Sbjct: 56  ------RLDEAFSVLERA------VRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMD 103

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
               +P  VTY  L+ GL   G++DE         + +++   G  P L TY ++I+   
Sbjct: 104 EKKCLPTTVTYTALVDGLLKAGRLDEA------MAILEQMVEKGNSPTLKTYTVVIDGLS 157

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K GRV     IF  +L +   PDA  +T+LI  L
Sbjct: 158 KAGRVEEARRIFVDMLGNGCRPDAFVYTALISGL 191



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T  + + +F+ M++   S P + S++IL   + +    +  L +F  +   G+ PD   +
Sbjct: 515 TVGDGVELFESMVSQGTS-PNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVF 573

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N LI   C  GRV     V   + R    PDA ++ SL+  L    R+ EA  L   +++
Sbjct: 574 NTLIRWLCIAGRVDEALEVFRELERRS-APDAWSYWSLLDALSRCERMEEARLLSFHMKL 632

Query: 189 FGC 191
            GC
Sbjct: 633 QGC 635


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 166/363 (45%), Gaps = 41/363 (11%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +GD+ S     A  VF  ML  +  +P + ++++L     K    +    L+ R+    +
Sbjct: 481 QGDMDS-----ANGVFVEMLE-KGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENI 534

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P  +T NI+IN  CK GR S     L ++++  F P  +T+  +I     E  +  A A
Sbjct: 535 APSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALA 594

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           ++T++   G   +VFTY  LING C++ +  +AL + +EM N   E       D   Y  
Sbjct: 595 VYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIEL------DVTVYCA 648

Query: 242 IIDGLCKEAG----------------SANFLGFSCMAS-FSALNKMAFYFPLVR------ 278
           +IDG C++                  S N + +S M S F  L  M     L +      
Sbjct: 649 LIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEG 708

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           + C    +  LI GL K  KL  A EL+  +   G+MP+++TY++LI GLCN GQ++  +
Sbjct: 709 IPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQ 768

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  + + ++   + P ++ YN LI    K G +   F +   +L     PD  T+ 
Sbjct: 769 K------ILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYD 822

Query: 399 SLI 401
            L+
Sbjct: 823 ILV 825



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 149/333 (44%), Gaps = 30/333 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +++ M N   S P V + N L     K +  +    LF      G+  + +TYN 
Sbjct: 381 DKAYEIYNQMKNKDIS-PTVFNVNSLIRGYLKARSPEEASKLFDEAVACGI-ANVFTYNS 438

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G++S    +  +++R    P  V++ ++I   C +  +  A  +F ++   G
Sbjct: 439 LLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKG 498

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + ++ TY+ L++G  + G T  A  L++ M   N        P   T + II+GLCK  
Sbjct: 499 LKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGEN------IAPSDFTCNIIINGLCKAG 552

Query: 251 GSANFLGFSCMASFSALNKMAF--YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
            ++         S   L K+    + P       C+ + C+IDG  K   +  A  ++  
Sbjct: 553 RTSE--------SQDRLKKLVQEGFIP------TCMTYNCIIDGFVKEGSVNSALAVYTE 598

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + + G+ PNV TY  LI G C    MD          +   + + G+  D+  Y  LI+ 
Sbjct: 599 MCKIGVSPNVFTYTNLINGFCKSNNMD------LALKVMDEMKNKGIELDVTVYCALIDG 652

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           FC+ G + +   +   +     +P+ V ++S+I
Sbjct: 653 FCRKGDMVNASQLLSELQEVGLSPNKVVYSSMI 685



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 142/333 (42%), Gaps = 36/333 (10%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +++I+   + K       L L + +   G  P    +  +I    K G++     V G +
Sbjct: 261 AYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEM 320

Query: 152 LRSCFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           L SC  P + V  T+L+K  C +  +  A  LF K+   G   +  TY  +I   C+ G+
Sbjct: 321 L-SCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGN 379

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-----EA----------GSANF 255
              A  ++ +M N +        P     +++I G  K     EA          G AN 
Sbjct: 380 MDKAYEIYNQMKNKD------ISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANV 433

Query: 256 LGFSCMASF-SALNKM----AFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQS 308
             ++ + S+     KM    + +  +VR  V+   +++  +I G C+   +  A  +F  
Sbjct: 434 FTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVE 493

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   GL PN++TY++L+ G    G        E  F L+ R+    + P  +T NI+IN 
Sbjct: 494 MLEKGLKPNLITYSVLMDGYFKKGDT------EYAFGLYDRMRGENIAPSDFTCNIIING 547

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            CK GR S       +++   F P  +T+  +I
Sbjct: 548 LCKAGRTSESQDRLKKLVQEGFIPTCMTYNCII 580



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 137/340 (40%), Gaps = 52/340 (15%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FN L     KTK  +  +  F  L    + P     NI ++   K   +     V  ++ 
Sbjct: 157 FNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVYNKMA 216

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                 D  T + +I+    E ++ EA   F + +  G ELD   Y+ +I  +C+   ++
Sbjct: 217 SKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSV 276

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            AL L  EM +     G V  P  + ++ +I G+C + G         + +     +M  
Sbjct: 277 AALGLLREMRDK----GWV--PHEVIFTRVI-GVCMKQGKM-------LEAVKVKGEMLS 322

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
               + V         L+ G CK   L  A ELF  +   G+ PN VTY ++I   C +G
Sbjct: 323 CGKPMNVVVAT----TLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNG 378

Query: 333 QMDETKHYE------------TVF-------------------LLFKRLNSTGLFPDLYT 361
            MD  K YE            TVF                    LF    + G+  +++T
Sbjct: 379 NMD--KAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGI-ANVFT 435

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           YN L++  CK G++S    I+ +++     P  V++ ++I
Sbjct: 436 YNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMI 475



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 109/279 (39%), Gaps = 24/279 (8%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D   +N L+N + K  R++        ++     P        + +L   + I EA  ++
Sbjct: 153 DSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREARDVY 212

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            K+   G + D  T + +I    R G    A   F E  N   E       DA  YS +I
Sbjct: 213 NKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVEL------DARAYSIVI 266

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           + +CK+  S   LG   +        +       RV  +C+          K  K+  A 
Sbjct: 267 EAVCKKPDSVAALGL--LREMRDKGWVPHEVIFTRVIGVCM----------KQGKMLEAV 314

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           ++   +   G   NVV    L++G C  G +D      +   LF ++N  G+ P+  TY 
Sbjct: 315 KVKGEMLSCGKPMNVVVATTLMKGYCKQGDLD------SALELFDKMNENGICPNNVTYA 368

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           ++I   CK G +   + I+ ++     +P      SLI+
Sbjct: 369 VIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIR 407


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 159/336 (47%), Gaps = 26/336 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++ + +F+  +  R   P V SFN++   + +       L L +R+N  G  PD  T+NI
Sbjct: 235 HDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 294

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +++  C+   VS G  VL R+ R     P+ VTFTS+I   C   ++ +A A++  +   
Sbjct: 295 IVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 354

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +  TYN LING  + G    A+ ++++M        + C PD +T+S++IDG C+ 
Sbjct: 355 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR------LRCPPDVVTFSSLIDGYCRC 408

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
               + L           + MA +    R+Q     F  +I  LCK ++   A  L   L
Sbjct: 409 GQLDDALRI--------WSDMAQH----RIQPNVYTFSIIIHSLCKQNRSDEAICLLNEL 456

Query: 310 P-RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
             R  + P    YN +I  LC  G++DE        L+ K +   G  PD YTY ILI  
Sbjct: 457 NLRPDIAPQAFIYNPVIDVLCKCGKVDEAN------LIRKGMEEKGCRPDKYTYTILIIG 510

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +C   R+S   + F  ++ +  +PD++T    I  L
Sbjct: 511 YCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCL 546



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 142/299 (47%), Gaps = 29/299 (9%)

Query: 108 TVLSLFKRLNLTGL--FPDRYTYNILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVTFT 164
           + L++F  L+ + L   P  ++   +I   C+ GR +    +  ++     ++PDA  F 
Sbjct: 128 SALAVFTALHCSPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDA-RFL 186

Query: 165 SLIKDLCAESRIMEAAA-LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           S +   C  + +++A+A L +K   FGC ++ + YN L++ L   G     + LFE    
Sbjct: 187 SFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQ 246

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
                  V  PD  +++ +I G+C+       L          +N+       V      
Sbjct: 247 DR-----VYSPDVWSFNVVIKGVCRVGQVQKALEL-----VERMNEFGCSPDTV------ 290

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGL-MPNVVTYNILIRGLCNDGQMDETKHYET 342
                ++DGLC+ +++    E+ + L R G+ MPNVVT+  +I G C  G++      E 
Sbjct: 291 -THNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKL------ED 343

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              ++  + ++G+ P+  TYN+LIN + K+G + S   ++ ++      PD VTF+SLI
Sbjct: 344 AMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLI 402



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 112/254 (44%), Gaps = 21/254 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F  +     K    +  ++++  +  +G+ P+  TYN+LIN + K+G +     V
Sbjct: 323 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 382

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++ R    PD VTF+SLI   C   ++ +A  +++ +     + +V+T++ +I+ LC+
Sbjct: 383 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 442

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
              +  A+ L  E+ N   +      P A  Y+ +ID LCK  +   AN +         
Sbjct: 443 QNRSDEAICLLNEL-NLRPDIA----PQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGC 497

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             +K  +                LI G C  S++  A   F  +  AG  P+ +T N  I
Sbjct: 498 RPDKYTYTI--------------LIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFI 543

Query: 326 RGLCNDGQMDETKH 339
             L   G  +E  H
Sbjct: 544 SCLLKAGMPNEVDH 557


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 156/325 (48%), Gaps = 31/325 (9%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++   P    +T  N+++G    +K  +  + L K +N  GL PD YTYN LI  +CK G
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVN-EGLEPDSYTYNTLIAGYCKGG 335

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V     ++G  + + F PD  T+ SLI  LC E     A ALF +    G + +V  YN
Sbjct: 336 MVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYN 395

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TLI GL   G  + A  L  EM+    E G++  P+  T++ +++GLCK           
Sbjct: 396 TLIKGLSNQGMILEAAQLANEMS----EKGLI--PEVQTFNILVNGLCK---------MG 440

Query: 260 CMASFSALNKMAF---YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
           C++    L K+     YFP +        F  LI G     K++ A E+   +   G+ P
Sbjct: 441 CVSDADGLVKVMISKGYFPDI------FTFNILIHGYSTQLKMENALEILDVMLDNGVDP 494

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           +V TYN L+ GLC      +T  +E V   +K +   G  P+L+T+NIL+   C+  ++ 
Sbjct: 495 DVYTYNSLLNGLC------KTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLD 548

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
               +   +      PDAVTF +LI
Sbjct: 549 EALGLLEEMKNKSVNPDAVTFGTLI 573



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/326 (31%), Positives = 155/326 (47%), Gaps = 28/326 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           +++FN L   L K         L  ++   G+ P+ +TYN+ I   C+ G +     ++G
Sbjct: 216 LSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVG 275

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     PD +T+ +LI  LC  S+  EA     K+   G E D +TYNTLI G C+ G
Sbjct: 276 CLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGG 335

Query: 210 HTIVALNLFEEMANGNGEF-GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS-AL 267
              +A     E   G+  F G V  PD  TY ++IDGLC E G  N      +A F+ AL
Sbjct: 336 MVQLA-----ERIVGDAVFNGFV--PDQFTYRSLIDGLCHE-GETN----RALALFNEAL 383

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K       ++   +  N   LI GL     +  A +L   +   GL+P V T+NIL+ G
Sbjct: 384 GKG------IKPNVILYN--TLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNG 435

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G + +         L K + S G FPD++T+NILI+ +    ++ +   I   +L 
Sbjct: 436 LCKMGCVSDADG------LVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLD 489

Query: 388 SCFTPDAVTFTSLIKILEINSFFRQV 413
           +   PD  T+ SL+  L   S F  V
Sbjct: 490 NGVDPDVYTYNSLLNGLCKTSKFEDV 515



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 137/309 (44%), Gaps = 23/309 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FNIL   L K         L K +   G FPD +T+NILI+ +    ++ +   +
Sbjct: 424 PEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEI 483

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L +   PD  T+ SL+  LC  S+  +    +  +   GC  ++FT+N L+  LCR
Sbjct: 484 LDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCR 543

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 AL L EEM N +        PDA+T+ T+IDG CK              +++  
Sbjct: 544 YRKLDEALGLLEEMKNKS------VNPDAVTFGTLIDGFCKNG--------DLDGAYTLF 589

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            KM   +   +V      +  +I    +   + +A +LFQ +    L P+  TY +++ G
Sbjct: 590 RKMEEAY---KVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDG 646

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  G ++        FLL   +   G  P L T   +INC C   RV     I  R++ 
Sbjct: 647 FCKTGNVNLGYK----FLL--EMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQ 700

Query: 388 SCFTPDAVT 396
               P+AV 
Sbjct: 701 KGLVPEAVN 709



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 162/393 (41%), Gaps = 79/393 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ VF+ M +     P V S+N +   L  + ++D    ++ R+   G+ PD Y++ I
Sbjct: 93  QEAVNVFERM-DFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTI 151

Query: 131 LINCFCKMGR-----------------------------------VSHGFVVLGRILRSC 155
            +  FCK  R                                    + G+ + G++L S 
Sbjct: 152 RMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASG 211

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
            +    TF  L++ LC +  + E   L  K+   G   ++FTYN  I GLC+ G    A+
Sbjct: 212 VSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAV 271

Query: 216 NLFEEMANGNGEFGVVCE----PDAITYSTIIDGLCKEAG---SANFLGFSCMA-----S 263
            +           G + E    PD ITY+ +I GLCK +    +  +LG          S
Sbjct: 272 RM----------VGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDS 321

Query: 264 FSALNKMAFYFPLVRVQCL---------------CLNFLCLIDGLCKISKLKIARELFQS 308
           ++    +A Y     VQ                    +  LIDGLC   +   A  LF  
Sbjct: 322 YTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNE 381

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
               G+ PNV+ YN LI+GL N G + E         L   ++  GL P++ T+NIL+N 
Sbjct: 382 ALGKGIKPNVILYNTLIKGLSNQGMILEAAQ------LANEMSEKGLIPEVQTFNILVNG 435

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            CK+G VS    +   ++   + PD  TF  LI
Sbjct: 436 LCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 148/335 (44%), Gaps = 26/335 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N AL +F+  L  +  +P V  +N L   L+          L   ++  GL P+  T+NI
Sbjct: 373 NRALALFNEALG-KGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNI 431

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  CKMG VS    ++  ++   + PD  TF  LI     + ++  A  +   +   G
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNG 491

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV+TYN+L+NGLC+T      +  ++ M          C P+  T++ +++ LC+  
Sbjct: 492 VDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKG------CAPNLFTFNILLESLCRYR 545

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                LG        ++N  A            + F  LIDG CK   L  A  LF+ + 
Sbjct: 546 KLDEALGLLEEMKNKSVNPDA------------VTFGTLIDGFCKNGDLDGAYTLFRKME 593

Query: 311 RA-GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            A  +  +  TYNI+I          E  +      LF+ +    L PD YTY ++++ F
Sbjct: 594 EAYKVSSSTPTYNIIIHAFT------EKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGF 647

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           CK G V+ G+     ++ + F P   T   +I  L
Sbjct: 648 CKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCL 682



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 119/306 (38%), Gaps = 86/306 (28%)

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL---------------- 205
            +   +K+   + ++ EA  +F ++  + CE  VF+YN +++ L                
Sbjct: 78  VYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRM 137

Query: 206 -------------------CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
                              C+T     AL L   M++        CE + + Y T++ G 
Sbjct: 138 RDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQG------CEMNVVAYCTVVGGF 191

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN-FLCLIDGLCKISKLKIAREL 305
            +E             +F A     F   L     LCL+ F  L+  LCK   +K   +L
Sbjct: 192 YEE-------------NFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKL 238

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMD------------------------------ 335
              + + G++PN+ TYN+ I+GLC  G++D                              
Sbjct: 239 LDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCK 298

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
            +K  E    L K +N  GL PD YTYN LI  +CK G V     I G  + + F PD  
Sbjct: 299 NSKFQEAEVYLGKMVNE-GLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQF 357

Query: 396 TFTSLI 401
           T+ SLI
Sbjct: 358 TYRSLI 363


>gi|255661032|gb|ACU25685.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 373

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 160/332 (48%), Gaps = 28/332 (8%)

Query: 75  CVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           C+  + L  R     V SFNI+   L      D  +S+++ +  +G   D  TY IL++ 
Sbjct: 44  CIELWELMGREDSQNVVSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDG 103

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
           FCK G ++    VLG         DA  ++++I  LC E+++ EA ++   +   G   +
Sbjct: 104 FCKNGYINKSLRVLGIAEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPN 163

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
              YNTLING         A+ +F EM + N      C P  +TY+T+I+GLCK      
Sbjct: 164 AHVYNTLINGFVGVSKFDDAIRVFREMGSTN------CSPTVVTYNTLINGLCK------ 211

Query: 255 FLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
             G     ++  + +M    + P V      + +  L+ GLC+  K+++A +L+  +   
Sbjct: 212 --GERFAEAYDLVKEMLEKGWKPCV------ITYSLLMKGLCQGHKVEMALQLWNQVISN 263

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           GL P+V   NILI GLC+ G+       +   +L+  +N     P+L T+N L+  F K 
Sbjct: 264 GLKPDVQMLNILIHGLCSVGKT------QLALMLYFDMNRWNCAPNLVTHNTLMEGFYKD 317

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G + +   I+ RIL +   PD V++   +K L
Sbjct: 318 GDIRNALGIWARILRNGLQPDIVSYNITLKGL 349



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 112/260 (43%), Gaps = 54/260 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ V + M+      P    +N L         +D  + +F+ +  T   P   TYN 
Sbjct: 146 DEAVSVLNGMIK-NGGTPNAHVYNTLINGFVGVSKFDDAIRVFREMGSTNCSPTVVTYNT 204

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK  R +  + ++  +L   + P  +T++ L+K LC   ++  A  L+ ++   G
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNG 264

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV   N LI+GLC  G T +AL L+ +M   N      C P+ +T++T+++G  K+ 
Sbjct: 265 LKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRWN------CAPNLVTHNTLMEGFYKDG 318

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              N LG                                               ++  + 
Sbjct: 319 DIRNALG-----------------------------------------------IWARIL 331

Query: 311 RAGLMPNVVTYNILIRGLCN 330
           R GL P++V+YNI ++GLC+
Sbjct: 332 RNGLQPDIVSYNITLKGLCS 351



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 100/265 (37%), Gaps = 52/265 (19%)

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN------- 223
           C    I  A  ++ ++       D   YN ++NG  R G     + L+E M         
Sbjct: 1   CESGDIDGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRIKDCIELWELMGREDSQNVV 60

Query: 224 ----------GNGEFGVVCE-----------PDAITYSTIIDGLCKEAGSANFLGFSCMA 262
                     GNG+                  D+ TY  ++DG CK              
Sbjct: 61  SFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNG------------ 108

Query: 263 SFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
               +NK      +   +   L+   +  +I+GLCK +KL  A  +   + + G  PN  
Sbjct: 109 ---YINKSLRVLGIAEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAH 165

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            YN LI G     + D+         +F+ + ST   P + TYN LIN  CK  R +  +
Sbjct: 166 VYNTLINGFVGVSKFDDA------IRVFREMGSTNCSPTVVTYNTLINGLCKGERFAEAY 219

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            +   +L   + P  +T++ L+K L
Sbjct: 220 DLVKEMLEKGWKPCVITYSLLMKGL 244


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 153/353 (43%), Gaps = 36/353 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+  F  M   R   P   S N L    AK    D V   FK +   G  P  +TYNI+
Sbjct: 78  EAIQCFSKMKRFRVF-PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIM 136

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+C CK G V     +   +      PD VT+ S+I       R+ +    F +++   C
Sbjct: 137 IDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 196

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           E DV TYN LIN  C+ G   + L  + EM  GNG      +P+ ++YST++D  CKE  
Sbjct: 197 EPDVITYNALINCFCKFGKLPIGLEFYREM-KGNG-----LKPNVVSYSTLVDAFCKEGM 250

Query: 252 SANFLGF-----------------SCMASFSALNKMAFYFPL------VRVQCLCLNFLC 288
               + F                 S + +   +  ++  F L      V V+   + +  
Sbjct: 251 MQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTA 310

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LIDGLC   ++K A ELF  +  AG++PN+ +YN LI G      MD          L  
Sbjct: 311 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDR------ALELLN 364

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            L   G+ PDL  Y   I   C + ++ +  V+   +       +++ +T+L+
Sbjct: 365 ELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLM 417



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 141/334 (42%), Gaps = 68/334 (20%)

Query: 76  VFDYMLNMRPS-RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           VFD + + R    P    F+ LF  L      +  +  F ++    +FP   + N L++ 
Sbjct: 45  VFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHR 104

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
           F K+G+                T D   F    KD+                   G    
Sbjct: 105 FAKLGK----------------TDDVKRF---FKDMIGA----------------GARPT 129

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF-GVVCEPDAITYSTIIDGLCKEAGSA 253
           VFTYN +I+ +C+ G    A  LFEEM     +F G+V  PD +TY+++IDG  K     
Sbjct: 130 VFTYNIMIDCMCKEGDVEAARGLFEEM-----KFRGLV--PDTVTYNSMIDGFGK----- 177

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLP 310
                        L+    +F  ++  C     + +  LI+  CK  KL I  E ++ + 
Sbjct: 178 ----------VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK 227

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL PNVV+Y+ L+   C +G M +   +      +  +   GL P+ YTY  LI+  C
Sbjct: 228 GNGLKPNVVSYSTLVDAFCKEGMMQQAIKF------YVDMRRVGLVPNEYTYTSLIDANC 281

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           KIG +S  F +   +L      + VT+T+LI  L
Sbjct: 282 KIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGL 315



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 135/313 (43%), Gaps = 23/313 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++  L   L   +       LF +++  G+ P+  +YN LI+ F K   +     +L 
Sbjct: 305 VVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLN 364

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      PD + + + I  LC+  +I  A  +  +++  G + +   Y TL++   ++G
Sbjct: 365 ELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSG 424

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
           +    L+L +EM   + E  VV      T+  +IDGLCK    +  + +         N+
Sbjct: 425 NPTEGLHLLDEMKELDIEVTVV------TFCVLIDGLCKNKLVSKAVDY--------FNR 470

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           ++  F L   Q     F  +IDGLCK ++++ A  LF+ + + GL+P+   Y  L+ G  
Sbjct: 471 ISNDFGL---QANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNF 527

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
             G + E         L  ++   G+  DL  Y  L+       ++         ++   
Sbjct: 528 KQGNVLE------ALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEG 581

Query: 390 FTPDAVTFTSLIK 402
             PD V   S++K
Sbjct: 582 IHPDEVLCISVLK 594



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 131/309 (42%), Gaps = 38/309 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S+N L     K K+ D  L L   L   G+ PD   Y   I   C + ++    VV
Sbjct: 338 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 397

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +       +++ +T+L+          E   L  +++    E+ V T+  LI+GLC+
Sbjct: 398 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 457

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGS----------- 252
                 A++ F  ++N   +FG+  + +A  ++ +IDGLCK    EA +           
Sbjct: 458 NKLVSKAVDYFNRISN---DFGL--QANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL 512

Query: 253 ------------ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
                        NF   + + + +  +KMA     + ++   L +  L+ GL   ++L+
Sbjct: 513 VPDRTAYTSLMDGNFKQGNVLEALALRDKMA----EIGMKLDLLAYTSLVWGLSHCNQLQ 568

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS--TGLFPD 358
            AR   + +   G+ P+ V    +++     G +DE    ++  +  + L S      P+
Sbjct: 569 KARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQLLTSDNDNALPN 628

Query: 359 LYTYNILIN 367
           +Y+   L++
Sbjct: 629 IYSDQNLVS 637


>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
          Length = 458

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 159/326 (48%), Gaps = 26/326 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYTYNILINCFCK 137
           L +R     + SFN     +A+      V SLF R+   G   + PD  TY+ILI C C+
Sbjct: 49  LPLRGWGASIYSFNRTLTDVARDSPAAAV-SLFNRMARAGADEVTPDLCTYSILIGCCCR 107

Query: 138 MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKLRVFGCELDVF 196
            GR+  GF  LG +++  F  +A+TF  L+K LCA+ R  +A  +   ++    C  DVF
Sbjct: 108 AGRLDLGFAALGNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVF 167

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           +   L+ GLC    +  AL L   MA+   + G    PD ++Y+T+I+G  KE  S    
Sbjct: 168 SCTILLKGLCDENRSQEALELLHMMAD---DRGGGSPPDVVSYTTVINGFFKEGDSDK-- 222

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
                 ++S  ++M       R+    + +  +I  LCK   +  A E+  ++ + G+MP
Sbjct: 223 ------AYSTYHEMLGR----RISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMP 272

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           + +TY+ ++ G C+ GQ  E            ++ S G+ P++ TY  L+N  CK GR +
Sbjct: 273 DCMTYSSILHGYCSSGQPKED------IGTLNKMRSDGVEPNVVTYRSLMNYLCKNGRCT 326

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIK 402
               IF  +      PD  T+ +L++
Sbjct: 327 KARKIFDSMTKRGLEPDIATYRTLLQ 352



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 127/294 (43%), Gaps = 32/294 (10%)

Query: 71  NEALCVFDYMLNMRP--SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
            EAL +   M + R   S P V S+  +     K    D   S +  +    + P+  TY
Sbjct: 183 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTY 242

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           + +I   CK   +     VL  ++++   PD +T++S++   C+  +  E      K+R 
Sbjct: 243 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLNKMRS 302

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G E +V TY +L+N LC+ G    A  +F+ M           EPD  TY T++ G   
Sbjct: 303 DGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRG------LEPDIATYRTLLQGY-- 354

Query: 249 EAGSANFLGFSCMASFSALNKM-AFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIAREL 305
                        A+  AL +M A    +VR  +Q     F  LI    K  K+  A  +
Sbjct: 355 -------------ATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLV 401

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
           F  + + GL PNVV Y  +I  LC  G +D+        L F+++   GL P++
Sbjct: 402 FSKMRQHGLNPNVVCYGTVIDVLCKSGSVDD------AMLYFEQMIDEGLTPNI 449



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 24/229 (10%)

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A  +  +L + G    ++++N  +  + R      A++LF  MA    +      PD  T
Sbjct: 42  ARHVLDELPLRGWGASIYSFNRTLTDVARD-SPAAAVSLFNRMARAGAD---EVTPDLCT 97

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           YS +I G C  AG  + LGF   A+   + K  F     RV+ +   F  L+ GLC   +
Sbjct: 98  YSILI-GCCCRAGRLD-LGF---AALGNVIKKGF-----RVEAI--TFAPLLKGLCADKR 145

Query: 299 LKIAREL-FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF- 356
              A ++  + +     MP+V +  IL++GLC     DE +  E + LL    +  G   
Sbjct: 146 TSDAMDIVLRRMTELSCMPDVFSCTILLKGLC-----DENRSQEALELLHMMADDRGGGS 200

Query: 357 -PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            PD+ +Y  +IN F K G     +  +  +L    +P+ VT++S+I  L
Sbjct: 201 PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAAL 249



 Score = 42.0 bits (97), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 37/81 (45%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P    FNIL    AK +  D  + +F ++   GL P+   Y  +I+  CK G V    +
Sbjct: 376 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 435

Query: 147 VLGRILRSCFTPDAVTFTSLI 167
              +++    TP+ +   S +
Sbjct: 436 YFEQMIDEGLTPNIILSVSSV 456


>gi|255661036|gb|ACU25687.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 376

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 163/331 (49%), Gaps = 29/331 (8%)

Query: 77  FD-YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           FD + L  R     V SFNI+   L      D  +S+++ +  +G   D  TY I+I+ F
Sbjct: 45  FDLWELMGRKGSQNVVSFNIMMRGLFDNGEVDKAISIWELMKKSGFVEDSITYGIIIDGF 104

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK G ++    VL          DA  ++++I  LC E+++ +A ++   +   GC+ + 
Sbjct: 105 CKNGYINKSLHVLEIAEGKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNA 164

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             YNTLING         A+ +F EM + +      C P  +TY T+I+GLCK       
Sbjct: 165 HVYNTLINGFVGASKFDDAIRVFREMGSMD------CSPTIVTYHTLINGLCK------- 211

Query: 256 LGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
            G     ++  + +M    + P V      + +  L+ GLC+  K+++A +L+  +   G
Sbjct: 212 -GERFSEAYDLVKEMLEKGWKPCV------ITYSLLMKGLCQGHKVEMALQLWNQVLSKG 264

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
             P+V  +NILI GLC+ G+   T+H     +L+  +N     P+L T+N L+  F K G
Sbjct: 265 FKPDVQMHNILIHGLCSVGK---TQH---ALMLYFDMNHWNCAPNLVTHNTLMEGFYKDG 318

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            + +  VI+ RIL S   PD +++   +K L
Sbjct: 319 DIRNALVIWARILRSGLQPDIISYNITLKGL 349



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 149/321 (46%), Gaps = 40/321 (12%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++  +  + + PD   YN ++  F ++GR+   F  L  ++    + + V+F  +
Sbjct: 7   DGAKRVYMEMAESKVSPDAVVYNAMLIGFLRVGRIKDCFD-LWELMGRKGSQNVVSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L     + +A +++  ++  G   D  TY  +I+G C+ G+   +L++  E+A G G
Sbjct: 66  MRGLFDNGEVDKAISIWELMKKSGFVEDSITYGIIIDGFCKNGYINKSLHVL-EIAEGKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFL-----------------------GFSCMAS 263
             GV+   DA  YS +I+GLCKEA     +                       GF   + 
Sbjct: 125 --GVL---DAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASK 179

Query: 264 FSALNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
           F   + +  +  +  + C    + +  LI+GLCK  +   A +L + +   G  P V+TY
Sbjct: 180 FD--DAIRVFREMGSMDCSPTIVTYHTLINGLCKGERFSEAYDLVKEMLEKGWKPCVITY 237

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           ++L++GLC      +    E    L+ ++ S G  PD+  +NILI+  C +G+     ++
Sbjct: 238 SLLMKGLC------QGHKVEMALQLWNQVLSKGFKPDVQMHNILIHGLCSVGKTQHALML 291

Query: 382 FGRILPSCFTPDAVTFTSLIK 402
           +  +      P+ VT  +L++
Sbjct: 292 YFDMNHWNCAPNLVTHNTLME 312



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 113/260 (43%), Gaps = 54/260 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ V + M+     +P    +N L         +D  + +F+ +      P   TY+ 
Sbjct: 146 DKAVSVLNGMIK-SGCKPNAHVYNTLINGFVGASKFDDAIRVFREMGSMDCSPTIVTYHT 204

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK  R S  + ++  +L   + P  +T++ L+K LC   ++  A  L+ ++   G
Sbjct: 205 LINGLCKGERFSEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVLSKG 264

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV  +N LI+GLC  G T  AL L+ +M + N      C P+ +T++T+++G  K+ 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKTQHALMLYFDMNHWN------CAPNLVTHNTLMEGFYKDG 318

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              N                                               A  ++  + 
Sbjct: 319 DIRN-----------------------------------------------ALVIWARIL 331

Query: 311 RAGLMPNVVTYNILIRGLCN 330
           R+GL P++++YNI ++GLC+
Sbjct: 332 RSGLQPDIISYNITLKGLCS 351



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 99/265 (37%), Gaps = 52/265 (19%)

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN------- 223
           C    I  A  ++ ++       D   YN ++ G  R G      +L+E M         
Sbjct: 1   CESGDIDGAKRVYMEMAESKVSPDAVVYNAMLIGFLRVGRIKDCFDLWELMGRKGSQNVV 60

Query: 224 ----------GNGEFGVVCE-----------PDAITYSTIIDGLCKEAGSANFLGFSCMA 262
                      NGE                  D+ITY  IIDG CK              
Sbjct: 61  SFNIMMRGLFDNGEVDKAISIWELMKKSGFVEDSITYGIIIDGFCKNG------------ 108

Query: 263 SFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
               +NK      +   +   L+   +  +I+GLCK +KL  A  +   + ++G  PN  
Sbjct: 109 ---YINKSLHVLEIAEGKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAH 165

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            YN LI G     + D+         +F+ + S    P + TY+ LIN  CK  R S  +
Sbjct: 166 VYNTLINGFVGASKFDDA------IRVFREMGSMDCSPTIVTYHTLINGLCKGERFSEAY 219

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            +   +L   + P  +T++ L+K L
Sbjct: 220 DLVKEMLEKGWKPCVITYSLLMKGL 244


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 155/345 (44%), Gaps = 37/345 (10%)

Query: 68  ITPNEALCVFDYMLNMRP-SRPP-VTSFNILFGCLAKTKH-YDTVLSLFKRLNLTGLFPD 124
           +  N+    F +  NMR    PP V S N+L   L +     D  L +F  +   G  PD
Sbjct: 132 VEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPD 191

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            YTY  LI+  C+ GR+     +   ++     P  VT+TSLI  LC    + EA     
Sbjct: 192 SYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVE 251

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE-EMANGNGEFGVVCEPDAITYSTII 243
           +++  G E +VFTY++L++GLC+ G ++ A+ LFE  MA G       C P+ +TY+T+I
Sbjct: 252 EMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARG-------CRPNMVTYTTLI 304

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
            GLCKE      +      +   L   A  +  V            I G C +SK + A 
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKV------------ISGFCAVSKFREAA 352

Query: 304 ELFQSLPRAGLMPNVVTYNI-------LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
                +   G+ PN +T+NI       ++RGLC       T +    F L+  + S G+ 
Sbjct: 353 NFLDEMILGGITPNRLTWNIHVKTSNEVVRGLC-------TNYPSRAFTLYLSMRSRGIS 405

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            ++ T + L+ C CK G       +   I+     P+  T+  LI
Sbjct: 406 VEVETLDSLVKCLCKKGEFQKAVQLVDEIVTDGCIPNKGTWKLLI 450



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 134/297 (45%), Gaps = 31/297 (10%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           L +F ++      P +  Y  ++    +  +++  F     +      P   +   LIK 
Sbjct: 106 LRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKA 165

Query: 170 LCAESRIMEAA-ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
           LC     ++A   +F ++   GC+ D +TY TLI+GLCR G    A  LF EM   +   
Sbjct: 166 LCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD--- 222

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN--- 285
              C P  +TY+++I+GLC   GS N            +++   Y   ++ + +  N   
Sbjct: 223 ---CAPTVVTYTSLINGLC---GSKN------------VDEAMRYVEEMKGKGIEPNVFT 264

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  L+DGLCK  +   A ELF+ +   G  PN+VTY  LI GLC + ++ E         
Sbjct: 265 YSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVE------ 318

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           L  R+N  GL PD   Y  +I+ FC + +          ++    TP+ +T+   +K
Sbjct: 319 LLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGITPNRLTWNIHVK 375



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 113/261 (43%), Gaps = 31/261 (11%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA-LN 216
           P    + +++  L  E+++  A   +  +R  G    V + N LI  LCR   T+ A L 
Sbjct: 119 PSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLK 178

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF-P 275
           +F EM          C+PD+ TY T+I GLC+               F  +++    F  
Sbjct: 179 IFHEMPKRG------CDPDSYTYGTLISGLCR---------------FGRIDEAKKLFTE 217

Query: 276 LVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
           +V   C    + +  LI+GLC    +  A    + +   G+ PNV TY+ L+ GLC DG+
Sbjct: 218 MVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGR 277

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
             +         LF+ + + G  P++ TY  LI   CK  ++     +  R+      PD
Sbjct: 278 SLQAME------LFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPD 331

Query: 394 AVTFTSLIKILEINSFFRQVA 414
           A  +  +I      S FR+ A
Sbjct: 332 AGLYGKVISGFCAVSKFREAA 352


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 149/330 (45%), Gaps = 25/330 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M  M    P V +FN L     K    D V  L + +  +G   D  TYN L
Sbjct: 206 EARSLFSRMKEM-GCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNAL 264

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           INCFCK GR+   +     + R     + VTF++ +   C E  + EA  LF ++RV G 
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            L+ FTY  LI+G C+ G    A+ L +EM        VV      TY+ ++DGLCKE  
Sbjct: 325 ALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV------TYTVLVDGLCKERK 378

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            A       M   +             V+   L +  LI G       + A  L   +  
Sbjct: 379 VAEAEDVLRMMEKAG------------VRANELLYTTLIHGHFMNKNSEKALGLLSEMKN 426

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL  ++  Y  LI+GLCN  ++DE K       L  +++ +GL P+   Y  +++   K
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKS------LLTKMDESGLEPNYIIYTTMMDACFK 480

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G+V     +  +IL S F P+ +T+ +LI
Sbjct: 481 SGKVPEAIAMLQKILDSGFQPNVITYCALI 510



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 160/389 (41%), Gaps = 67/389 (17%)

Query: 70  PNEALCVFDYM----LNMRPSRPPVTSF-NILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           P+ A  + D +    L + P R  + S  + L   LA     D  +    R+    + P+
Sbjct: 97  PHLAASLVDLLHRAALALGPRRSALASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPN 156

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
             T N   +   ++ R   G +V  R+      P+  TF  +I  LC E  + EA +LF+
Sbjct: 157 TRTCN---HILLRLARDRSGRLV-RRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFS 212

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           +++  GC  DV T+N+LI+G  + G       L EEM          C+ D +TY+ +I+
Sbjct: 213 RMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG------CKADVVTYNALIN 266

Query: 245 GLCK----------------EAGSANFLGFSCMASF---SALNKMAF-YFPLVRVQCLCL 284
             CK                E   AN + FS          L + A   F  +RV+ + L
Sbjct: 267 CFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMAL 326

Query: 285 N---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET---- 337
           N   + CLIDG CK  +L  A  L   + R G+  NVVTY +L+ GLC + ++ E     
Sbjct: 327 NEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVL 386

Query: 338 -------------------------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
                                    K+ E    L   + + GL  D+  Y  LI   C +
Sbjct: 387 RMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNV 446

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            ++     +  ++  S   P+ + +T+++
Sbjct: 447 HKLDEAKSLLTKMDESGLEPNYIIYTTMM 475



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 143/376 (38%), Gaps = 82/376 (21%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +F+       K       + LF ++ + G+  + +TY  LI+  CK GR+    V+L 
Sbjct: 293 VVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLD 352

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAA----------------------------- 180
            ++R     + VT+T L+  LC E ++ EA                              
Sbjct: 353 EMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNK 412

Query: 181 ------ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC-- 232
                  L ++++  G ELD+  Y  LI GLC       A +L  +M     E   +   
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYT 472

Query: 233 ---------------------------EPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
                                      +P+ ITY  +IDGLCK AGS +        + S
Sbjct: 473 TMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCK-AGSID-------EAIS 524

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             NKM        VQ     +  L+DGLCK   L  A +LF  +   G+  + V Y  L+
Sbjct: 525 HFNKMRDLGLDPNVQA----YTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALL 580

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G    G + +       F L  ++  +GL  DL+ Y   I+ FC +  +     +F  +
Sbjct: 581 DGYLKQGNLHDA------FALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM 634

Query: 386 LPSCFTPDAVTFTSLI 401
           +     PD   +  LI
Sbjct: 635 IGHGIAPDRAVYNCLI 650



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 111/248 (44%), Gaps = 18/248 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           ++ +  L   L      D   SL  +++ +GL P+   Y  +++   K G+V     +L 
Sbjct: 433 ISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQ 492

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           +IL S F P+ +T+ +LI  LC    I EA + F K+R  G + +V  Y  L++GLC+ G
Sbjct: 493 KILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNG 552

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ LF EM +           D + Y+ ++DG  K+    +          S L  
Sbjct: 553 CLNEAVQLFNEMVHKGMSL------DKVVYTALLDGYLKQGNLHDAFALKAKMIDSGL-- 604

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                   ++   C  + C I G C ++ +  ARE+F  +   G+ P+   YN LI    
Sbjct: 605 --------QLDLFC--YTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQ 654

Query: 330 NDGQMDET 337
             G ++E 
Sbjct: 655 KLGNLEEA 662



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 130/299 (43%), Gaps = 33/299 (11%)

Query: 104 KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTF 163
           K+ +  L L   +   GL  D   Y  LI   C + ++     +L ++  S   P+ + +
Sbjct: 412 KNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIY 471

Query: 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           T+++       ++ EA A+  K+   G + +V TY  LI+GLC+ G    A++ F +M +
Sbjct: 472 TTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRD 531

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
                G+  +P+   Y+ ++DGLCK                  LN+    F  +  + + 
Sbjct: 532 ----LGL--DPNVQAYTALVDGLCKNG---------------CLNEAVQLFNEMVHKGMS 570

Query: 284 LN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
           L+   +  L+DG  K   L  A  L   +  +GL  ++  Y   I G CN   M E +  
Sbjct: 571 LDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEARE- 629

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI---FGRILPSCFTPDAVT 396
                +F  +   G+ PD   YN LI+ + K+G +     +     R+LPSC   D  T
Sbjct: 630 -----VFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERVLPSCTDSDTAT 683



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 6/157 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++  L   L K    D  +S F ++   GL P+   Y  L++  CK G ++    
Sbjct: 500 QPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   ++    + D V +T+L+     +  + +A AL  K+   G +LD+F Y   I+G C
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFC 619

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
                  A  +F EM  G+G       PD   Y+ +I
Sbjct: 620 NLNMMPEAREVFSEMI-GHG-----IAPDRAVYNCLI 650



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+  F+ M ++    P V ++  L   L K    +  + LF  +   G+  D+  Y  
Sbjct: 520 DEAISHFNKMRDLGLD-PNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTA 578

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ + K G +   F +  +++ S    D   +T  I   C  + + EA  +F+++   G
Sbjct: 579 LLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHG 638

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
              D   YN LI+   + G+   A++L +EM
Sbjct: 639 IAPDRAVYNCLISKYQKLGNLEEAISLQDEM 669


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 149/330 (45%), Gaps = 25/330 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M  M    P V +FN L     K    D V  L + +  +G   D  TYN L
Sbjct: 206 EARSLFSRMKEM-GCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNAL 264

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           INCFCK GR+   +     + R     + VTF++ +   C E  + EA  LF ++RV G 
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            L+ FTY  LI+G C+ G    A+ L +EM        VV      TY+ ++DGLCKE  
Sbjct: 325 ALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV------TYTVLVDGLCKERK 378

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            A       M   +             V+   L +  LI G       + A  L   +  
Sbjct: 379 VAEAEDVLRMMEKAG------------VRANELLYTTLIHGHFMNKNSEKALGLLSEMKN 426

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL  ++  Y  LI+GLCN  ++DE K       L  +++ +GL P+   Y  +++   K
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKS------LLTKMDESGLEPNYIIYTTMMDACFK 480

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G+V     +  +IL S F P+ +T+ +LI
Sbjct: 481 SGKVPEAIAMLQKILDSGFQPNVITYCALI 510



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 160/389 (41%), Gaps = 67/389 (17%)

Query: 70  PNEALCVFDYM----LNMRPSRPPVTSF-NILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           P+ A  + D +    L + P R  + S  + L   LA     D  +    R+    + P+
Sbjct: 97  PHLAASLVDLLHRAALALGPRRSALASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPN 156

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
             T N   +   ++ R   G +V  R+      P+  TF  +I  LC E  + EA +LF+
Sbjct: 157 TRTCN---HILLRLARDRSGRLV-RRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFS 212

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           +++  GC  DV T+N+LI+G  + G       L EEM          C+ D +TY+ +I+
Sbjct: 213 RMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG------CKADVVTYNALIN 266

Query: 245 GLCK----------------EAGSANFLGFSCMASF---SALNKMAF-YFPLVRVQCLCL 284
             CK                E   AN + FS          L + A   F  +RV+ + L
Sbjct: 267 CFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMAL 326

Query: 285 N---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET---- 337
           N   + CLIDG CK  +L  A  L   + R G+  NVVTY +L+ GLC + ++ E     
Sbjct: 327 NEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVL 386

Query: 338 -------------------------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
                                    K+ E    L   + + GL  D+  Y  LI   C +
Sbjct: 387 RMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNV 446

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            ++     +  ++  S   P+ + +T+++
Sbjct: 447 HKLDEAKSLLTKMDESGLEPNYIIYTTMM 475



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 143/376 (38%), Gaps = 82/376 (21%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +F+       K       + LF ++ + G+  + +TY  LI+  CK GR+    V+L 
Sbjct: 293 VVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLD 352

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAA----------------------------- 180
            ++R     + VT+T L+  LC E ++ EA                              
Sbjct: 353 EMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNK 412

Query: 181 ------ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC-- 232
                  L ++++  G ELD+  Y  LI GLC       A +L  +M     E   +   
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYT 472

Query: 233 ---------------------------EPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
                                      +P+ ITY  +IDGLCK AGS +        + S
Sbjct: 473 TMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCK-AGSID-------EAIS 524

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             NKM        VQ     +  L+DGLCK   L  A +LF  +   G+  + V Y  L+
Sbjct: 525 HFNKMRDLGLDPNVQA----YTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALL 580

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G    G + +       F L  ++  +GL  DL+ Y   I+ FC +  +     +F  +
Sbjct: 581 DGYLKQGNLHDA------FALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM 634

Query: 386 LPSCFTPDAVTFTSLI 401
           +     PD   +  LI
Sbjct: 635 IGHGIAPDRAVYNCLI 650



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 111/248 (44%), Gaps = 18/248 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           ++ +  L   L      D   SL  +++ +GL P+   Y  +++   K G+V     +L 
Sbjct: 433 ISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQ 492

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           +IL S F P+ +T+ +LI  LC    I EA + F K+R  G + +V  Y  L++GLC+ G
Sbjct: 493 KILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNG 552

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ LF EM +           D + Y+ ++DG  K+    +          S L  
Sbjct: 553 CLNEAVQLFNEMVHKGMSL------DKVVYTALLDGYLKQGNLHDAFALKAKMIDSGL-- 604

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                   ++   C  + C I G C ++ +  ARE+F  +   G+ P+   YN LI    
Sbjct: 605 --------QLDLFC--YTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQ 654

Query: 330 NDGQMDET 337
             G ++E 
Sbjct: 655 KLGNLEEA 662



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 130/299 (43%), Gaps = 33/299 (11%)

Query: 104 KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTF 163
           K+ +  L L   +   GL  D   Y  LI   C + ++     +L ++  S   P+ + +
Sbjct: 412 KNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIY 471

Query: 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           T+++       ++ EA A+  K+   G + +V TY  LI+GLC+ G    A++ F +M +
Sbjct: 472 TTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRD 531

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
                G+  +P+   Y+ ++DGLCK                  LN+    F  +  + + 
Sbjct: 532 ----LGL--DPNVQAYTALVDGLCKNG---------------CLNEAVQLFNEMVHKGMS 570

Query: 284 LN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
           L+   +  L+DG  K   L  A  L   +  +GL  ++  Y   I G CN   M E +  
Sbjct: 571 LDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEARE- 629

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI---FGRILPSCFTPDAVT 396
                +F  +   G+ PD   YN LI+ + K+G +     +     R+LPSC   D  T
Sbjct: 630 -----VFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAISLQDEMERVLPSCTDSDTAT 683



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 6/157 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++  L   L K    D  +S F ++   GL P+   Y  L++  CK G ++    
Sbjct: 500 QPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQ 559

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   ++    + D V +T+L+     +  + +A AL  K+   G +LD+F Y   I+G C
Sbjct: 560 LFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFC 619

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
                  A  +F EM  G+G       PD   Y+ +I
Sbjct: 620 NLNMMPEAREVFSEMI-GHG-----IAPDRAVYNCLI 650



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+  F+ M ++    P V ++  L   L K    +  + LF  +   G+  D+  Y  
Sbjct: 520 DEAISHFNKMRDLGLD-PNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTA 578

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ + K G +   F +  +++ S    D   +T  I   C  + + EA  +F+++   G
Sbjct: 579 LLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHG 638

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
              D   YN LI+   + G+   A++L +EM
Sbjct: 639 IAPDRAVYNCLISKYQKLGNLEEAISLQDEM 669


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 161/358 (44%), Gaps = 36/358 (10%)

Query: 71  NEALCVFDYMLNMRP-SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +E+L  F + L   P S P  +S N L   L K KHYD V+S+  ++    +FP   + +
Sbjct: 39  SESLSHFHHTLQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLS 98

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI  F    + S  F VLG I++  F  +   F  L+K  C      +A  LF  ++  
Sbjct: 99  ALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRN 158

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
               D  +YNT+INGLC+    + A  LF+EM  G       C+P+++T+S +IDG CK 
Sbjct: 159 CLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGE------CKPNSVTFSALIDGFCKN 212

Query: 250 AGSANFLG-FSCMASFSALNKMAFYFPLVRVQCL----------------------CLNF 286
                  G    M        +  Y  L+   C                        + +
Sbjct: 213 GDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTY 272

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
            CL++ LCK  K K A ++  ++    + P+VV Y +L  GL  +G+  +    + + L+
Sbjct: 273 SCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDA--IKVLDLM 330

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            KR    G  P+  TYN +IN  CK GRV     I   +      PD VT+++L+K L
Sbjct: 331 VKR----GEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGL 384



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 153/334 (45%), Gaps = 27/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ V D M+  R   P   ++N +   L K    D  L + + +   G  PD  TY+ 
Sbjct: 321 SDAIKVLDLMVK-RGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYST 379

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCF--TPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           L+   C +G++     +L  ++   F   PD   F  +I++LC + R+  A  ++  +  
Sbjct: 380 LVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVE 439

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   ++ TYN LI+G    G    AL L+++  +          P+A TY+ +I+GLCK
Sbjct: 440 RGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSG------ISPNAATYTVLINGLCK 493

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                     S         + +   P V        +  L+  LC+ S ++ AR LFQ 
Sbjct: 494 ------MQMLSIAKGLFNKKRASGTRPTVS------EYNTLMASLCRESSVEQARNLFQE 541

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +  A   P+VV++NI+I G    G ++  K      L    +      PD  T++ILIN 
Sbjct: 542 MRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLV------PDNITFSILINR 595

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           F K+G++     ++ R++     PDAV F SL+K
Sbjct: 596 FLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLK 629



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 157/345 (45%), Gaps = 41/345 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   +F+ L     K    +    L + +   GL  D + Y+ LI+ FC  G +  G  
Sbjct: 196 KPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKE 255

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL--DVFTYNTLING 204
           +   +LR   TP+ VT++ L+  LC + +  EAA +   +   GC++  DV  Y  L +G
Sbjct: 256 LFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMT--GCKVRPDVVAYTVLADG 313

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMAS 263
           L + G    A+ + + M    GE     EP+ +TY+ II+GLCKE    + LG    MA 
Sbjct: 314 LSKNGRASDAIKVLDLMVK-RGE-----EPNNVTYNAIINGLCKEGRVDDALGILETMAK 367

Query: 264 FSALNKMAFYFPLVRVQCLC---------LNFL---------------CLIDGLCKISKL 299
                 +  Y  LV+  C           LN L                +I  LCK  +L
Sbjct: 368 KGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRL 427

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
           + A+ ++ ++   G   N+VTYNILI G  + G++  TK  E    L+K    +G+ P+ 
Sbjct: 428 RHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKL--TKALE----LWKDAVDSGISPNA 481

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            TY +LIN  CK+  +S    +F +   S   P    + +L+  L
Sbjct: 482 ATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASL 526



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 160/349 (45%), Gaps = 34/349 (9%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F+ ML  +   P V +++ L   L K + +     +   +    + PD   Y +L +  
Sbjct: 256 LFNEMLR-KNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGL 314

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            K GR S    VL  +++    P+ VT+ ++I  LC E R+ +A  +   +   G + DV
Sbjct: 315 SKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDV 374

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK------- 248
            TY+TL+ GLC  G    A++L   +   + EF +  +PD   ++ +I  LCK       
Sbjct: 375 VTYSTLVKGLCGVGKIDEAVDLLNLLM--SKEFHI--KPDVFAFNLVIQELCKQRRLRHA 430

Query: 249 --------EAG-SANFLGFSCM-ASFSALNKMAFYFPLVR------VQCLCLNFLCLIDG 292
                   E G  +N + ++ +   + +  K+     L +      +      +  LI+G
Sbjct: 431 KRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLING 490

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LCK+  L IA+ LF     +G  P V  YN L+  LC +  +++ ++      LF+ + +
Sbjct: 491 LCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARN------LFQEMRN 544

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               PD+ ++NI+I+   K G V S   +   +L     PD +TF+ LI
Sbjct: 545 ANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILI 593



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 132/303 (43%), Gaps = 32/303 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V +FN++   L K +       ++  +   G   +  TYNILI+ +   G+++    
Sbjct: 408 KPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALE 467

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +    + S  +P+A T+T LI  LC    +  A  LF K R  G    V  YNTL+  LC
Sbjct: 468 LWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLC 527

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASF 264
           R      A NLF+EM N N       +PD ++++ IIDG  K  +  SA  L    +   
Sbjct: 528 RESSVEQARNLFQEMRNANH------DPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMN 581

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
              + + F                LI+   K+ +L  A  L++ +   G +P+ V ++ L
Sbjct: 582 LVPDNITFSI--------------LINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSL 627

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           ++G    G+       E V  + +++    +  D    + ++ C C +    S  V   +
Sbjct: 628 LKGYSLKGKT------EKVVSMLQQMADKDVVLDSKLTSTILACLCNM----SKDVDIEK 677

Query: 385 ILP 387
           ILP
Sbjct: 678 ILP 680



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 6/162 (3%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           +RP V+ +N L   L +    +   +LF+ +      PD  ++NI+I+   K G V    
Sbjct: 512 TRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAK 571

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +L  +L     PD +TF+ LI       ++ EAA+L+ ++   G   D   +++L+ G 
Sbjct: 572 ELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGY 631

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
              G T   +++ ++MA+ +    VV   D+   STI+  LC
Sbjct: 632 SLKGKTEKVVSMLQQMADKD----VVL--DSKLTSTILACLC 667


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 164/359 (45%), Gaps = 39/359 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNI 130
           +AL  FD  L +  ++P V S+  L   L K    D    LF+++    G  P+ +TYN 
Sbjct: 28  QALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNA 87

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK  R+     V+    +  F PD VT+ +L+  L    R+ EA A FT++   G
Sbjct: 88  LVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEG 147

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
               + ++N +I GLCR      AL +F EM + +        P+ +TYS +IDGLCK  
Sbjct: 148 YVPTLVSFNAIITGLCRARRLADALEVFNEMIDRD------FHPNLVTYSVVIDGLCKSD 201

Query: 249 --------------EAGSANFLGFSCMA-SFSALNKMAFYFPLVR--VQCLCL----NFL 287
                         E    + + ++ +   FSA  ++     L+R  V   C+     + 
Sbjct: 202 QLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYT 261

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            +ID LCK+ ++  A E+F+ L      PNVVTY+ LI G C   ++DE           
Sbjct: 262 VVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGG--------- 312

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406
           K +      P++ TYN +I     + R    + +F  +    F PDA T+  L + L +
Sbjct: 313 KVMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRALRM 371



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 108/262 (41%), Gaps = 30/262 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL  F  M       P + SFN +   L + +     L +F  +      P+  TY++
Sbjct: 134 DEALATFTQMTE-EGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSV 192

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK  ++     +L R++     PD V +T L+    A  R+  A  L  ++   G
Sbjct: 193 VIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQG 252

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
           C  DV TY  +I+ LC+ G    A  +F E+          C P+ +TYS +I G C+  
Sbjct: 253 CIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANK------CSPNVVTYSALIGGYCRAS 306

Query: 249 --EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
             + G       +C  +    N M +                   GL  + + + A  +F
Sbjct: 307 RVDEGGKVMREMACRPNVVTYNTMIW-------------------GLSMVDRNEEAYGMF 347

Query: 307 QSLPRAGLMPNVVTYNILIRGL 328
           + +   G +P+  TY  L R L
Sbjct: 348 REMSECGFVPDARTYRGLKRAL 369



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 18/165 (10%)

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           T S I+ GLC+           C     AL        L   Q   +++  LI+GLCK+ 
Sbjct: 12  TTSIILQGLCR-----------CGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG 60

Query: 298 KLKIARELFQSLPRA-GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
           ++  A +LF+ +  A G  PN  TYN L+ GLC   ++D  +       +          
Sbjct: 61  RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAAR------AVIAEARKRDFA 114

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           PD+ TYN L+    ++GRV      F ++    + P  V+F ++I
Sbjct: 115 PDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAII 159



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++ ++   L K    D    +F+ L      P+  TY+ LI  +C+  RV  G   
Sbjct: 255 PDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEG--- 311

Query: 148 LGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            G+++R     P+ VT+ ++I  L    R  EA  +F ++   G   D  TY  L   L 
Sbjct: 312 -GKVMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRALR 370

Query: 207 RTGH 210
              H
Sbjct: 371 MIDH 374


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 165/349 (47%), Gaps = 35/349 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N + G   K K  D    L + + L GL P+  TYN++IN  C++GR+     V
Sbjct: 236 PNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGV 295

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  + R  F PD VT+ +L+   C      +A  L +++   G   DV TY +LIN +C+
Sbjct: 296 LAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCK 355

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL---------GF 258
            G+   A+  F++M            P+ +TY+++I+G  ++                GF
Sbjct: 356 AGNLNRAMEFFDQMHVRG------LRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGF 409

Query: 259 -SCMASFSAL-------NKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARE 304
              + +++AL        +M     L+R      +    +++  +I G C+  +L  A +
Sbjct: 410 PPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQ 469

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +   +   G+ P+ +TY+ LI+GLC   +++E         LF+ + +  L PD +TY  
Sbjct: 470 MNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACD------LFQEMLNKSLLPDEFTYTS 523

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           LIN +CK G ++    +   ++   F PD VT+  LI  L   +  R+ 
Sbjct: 524 LINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREA 572



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 155/318 (48%), Gaps = 30/318 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V S+NIL        + +  L  F+ +      P+  TYN +I  +CK+ R+   F +L 
Sbjct: 203 VFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLR 262

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      P+ +T+  +I  LC   RI E + +  ++   G   D  TYNTL+NG C+ G
Sbjct: 263 SMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVG 322

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
           +   AL L  EM   NG       PD +TY+++I+ +CK AG+              LN+
Sbjct: 323 NFHQALVLHSEMLR-NG-----LPPDVVTYTSLINTMCK-AGN--------------LNR 361

Query: 270 MAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
              +F  + V+ L  N   +  LI+G  +   +  A  ++  + R+G  P +VTYN L+ 
Sbjct: 362 AMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLN 421

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C  G+M+E         L + +   GL PD+ +Y+ +I  FC+   +   F +   ++
Sbjct: 422 GHCVSGRMEEA------IGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMV 475

Query: 387 PSCFTPDAVTFTSLIKIL 404
               +PDA+T++SLI+ L
Sbjct: 476 EKGVSPDAITYSSLIQGL 493



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 155/351 (44%), Gaps = 44/351 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A+  FD M ++R  RP   ++  L    ++    D    ++  +  +G  P   TYN 
Sbjct: 360 NRAMEFFDQM-HVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNA 418

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  C  GR+     +L  +     +PD V+++++I   C    +  A  +  ++   G
Sbjct: 419 LLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKG 478

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  TY++LI GLC       A +LF+EM N +        PD  TY+++I+G CKE 
Sbjct: 479 VSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKS------LLPDEFTYTSLINGYCKE- 531

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQS 308
           G  N           ALN    +  +++   L   + +  LI+GL K ++ + A+ L   
Sbjct: 532 GDLN----------EALN---LHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLK 578

Query: 309 LPRAGLMPNVVTYNI---------------LIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           L     +PN +TY+                LI+G C  G M+E         +F+ +   
Sbjct: 579 LFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQ------VFESMIKR 632

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              P+   YN++I+  C+ G V     ++  ++   F P  VT  +L+K L
Sbjct: 633 NQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKAL 683



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 125/316 (39%), Gaps = 44/316 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++ +     + +  D    +   +   G+ PD  TY+ LI   C+  R++    +
Sbjct: 446 PDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDL 505

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L     PD  T+TSLI   C E  + EA  L  ++   G   D  TYN LINGL +
Sbjct: 506 FQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNK 565

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
              T  A  L  ++      F     P+ ITY T+I+       S + + F  + +    
Sbjct: 566 QARTREAKRLLLKL------FYDESIPNGITYDTLIE-------SCSDIEFKSVVA---- 608

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                LI G C    +  A ++F+S+ +    PN   YN++I G
Sbjct: 609 ---------------------LIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHG 647

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C DG + +         L+K +   G  P   T   L+      G      ++   IL 
Sbjct: 648 HCRDGNVHKAHK------LYKEMVDFGFIPHTVTIIALVKALYSEGMDEQLNLVIRDILR 701

Query: 388 SCFTPDAVTFTSLIKI 403
           SC   DA    +L++I
Sbjct: 702 SCKLSDAELSKALVQI 717



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 64/252 (25%)

Query: 156 FTPDAVTFTSLIKDLCA-ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA 214
           F P  +++ +++  +      ++ A  ++ ++   G  L+VF+YN LI G C        
Sbjct: 163 FMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFC-------- 214

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
                  A GN E G                                        + F+ 
Sbjct: 215 -------AAGNLEMG----------------------------------------LRFFE 227

Query: 275 PLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
            + R +CL   + +  +I   CK+ ++  A +L +S+   GL PN++TYN++I GLC  G
Sbjct: 228 EMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVG 287

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           +++ET        +   ++  G  PD  TYN L+N +CK+G      V+   +L +   P
Sbjct: 288 RIEETSG------VLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPP 341

Query: 393 DAVTFTSLIKIL 404
           D VT+TSLI  +
Sbjct: 342 DVVTYTSLINTM 353


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 147/321 (45%), Gaps = 30/321 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+NI+     K ++ +  L+  + +   G  P  + Y+ ++  FCK G VS    V
Sbjct: 96  PNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDV 155

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      PD V F  L+  L    +I EA  LF  +   GC+ DV TYNT+I GLC+
Sbjct: 156 FAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCK 215

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A+ L E M   +        P  +TY+T+ID LCK A            ++   
Sbjct: 216 WKKLDEAVFLLERMKQED------VSPTFVTYTTLIDHLCKFA--------RLQQAYEVF 261

Query: 268 NKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            KMA         C C     + L LI+GLCK  +   A+E+FQ +   G+ P VVTYN 
Sbjct: 262 EKMA------EGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNT 315

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L+ GL +  ++ +    E  + +  ++ +    P+++TY ILI+  CK  +V   F +  
Sbjct: 316 LLEGLLSTAKLQDA--MELTYFMLDQVPA----PNMFTYEILISSLCKTDQVEEAFKLLS 369

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +    F P    +  L+  L
Sbjct: 370 AMRDKGFVPSLKIWEVLLSRL 390



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 130/275 (47%), Gaps = 25/275 (9%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
           ++ + +   G  PD  ++ +LI  F K G    G   L R+L +   P+A+ + +LI  L
Sbjct: 15  AIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCL 74

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C    + EA +   ++    C  +V +YN +I+G C+  +   AL    EM     E G 
Sbjct: 75  CKAGMLAEAESYLKRMPQH-CAPNVVSYNIIIDGYCKARNIEKALAFLREME----ELGH 129

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
              P A  YS+I+   CK    +       M  F+ +       P    +   +NF  L+
Sbjct: 130 PPTPHA--YSSIVQSFCKTGNVSK-----AMDVFAEM-------PAKGCEPDIVNFNVLL 175

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
            GL +  K+  ARELF+S+   G  P+VVTYN +I GLC   ++D     E VFLL +R+
Sbjct: 176 SGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLD-----EAVFLL-ERM 229

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
               + P   TY  LI+  CK  R+   + +F ++
Sbjct: 230 KQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKM 264



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 134/311 (43%), Gaps = 29/311 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F  M N R  +P V ++N +   L K K  D  + L +R+    + P   TY  
Sbjct: 185 HEARELFRSM-NSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTT 243

Query: 131 LINCFCKMGRVSHGFVVLGRILRS---CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           LI+  CK  R+   + V  ++      C  P A +   LI  LC   R  EA  +F ++R
Sbjct: 244 LIDHLCKFARLQQAYEVFEKMAEGPCPCTEP-AYSVLILINGLCKARRPGEAKEMFQEMR 302

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G    V TYNTL+ GL  T     A+ L   M +       V  P+  TY  +I  LC
Sbjct: 303 GRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQ------VPAPNMFTYEILISSLC 356

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K                SA+    F  P +++      +  L+  L +  +L  A EL++
Sbjct: 357 KTDQVEEAFKL-----LSAMRDKGF-VPSLKI------WEVLLSRLARAGRLDDAFELYK 404

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            + R      V + NIL+ G+   G +DE K +       K++  TG+ PD +TY+ L+ 
Sbjct: 405 EMSRINCQQLVGSSNILLDGILRRGSVDEAKDF------LKQMTDTGIVPDKFTYDKLVV 458

Query: 368 CFCKIGRVSSG 378
             C  G+    
Sbjct: 459 GLCWQGKADQA 469



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 136/328 (41%), Gaps = 67/328 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ VF  M   +   P + +FN+L   L + +       LF+ +N  G  PD  TYN 
Sbjct: 150 SKAMDVFAEM-PAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNT 208

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I   CK  ++     +L R+ +   +P  VT+T+LI  LC  +R+ +A  +F K+    
Sbjct: 209 MIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGP 268

Query: 191 CELDVFTYNTLI--NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           C      Y+ LI  NGLC+      A  +F+EM  G G       P  +TY+T+++GL  
Sbjct: 269 CPCTEPAYSVLILINGLCKARRPGEAKEMFQEM-RGRG-----ISPTVVTYNTLLEGLLS 322

Query: 249 EAG----------------SANFLGFSCMAS--------------FSALNKMAF------ 272
            A                 + N   +  + S               SA+    F      
Sbjct: 323 TAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKI 382

Query: 273 --------------------YFPLVRVQCLCL--NFLCLIDGLCKISKLKIARELFQSLP 310
                               Y  + R+ C  L  +   L+DG+ +   +  A++  + + 
Sbjct: 383 WEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMT 442

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETK 338
             G++P+  TY+ L+ GLC  G+ D+ +
Sbjct: 443 DTGIVPDKFTYDKLVVGLCWQGKADQAR 470



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 19/244 (7%)

Query: 71  NEALCVFDYMLNMR-PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
            +A  VF+ M     P   P  S  IL   L K +       +F+ +   G+ P   TYN
Sbjct: 255 QQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYN 314

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            L+       ++     +   +L     P+  T+  LI  LC   ++ EA  L + +R  
Sbjct: 315 TLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDK 374

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G    +  +  L++ L R G    A  L++EM+  N      C+    + + ++DG+ + 
Sbjct: 375 GFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRIN------CQQLVGSSNILLDGILRR 428

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                   F    + + +    F +              L+ GLC   K   AR+L + L
Sbjct: 429 GSVDEAKDFLKQMTDTGIVPDKFTYDK------------LVVGLCWQGKADQARKLVEEL 476

Query: 310 PRAG 313
            R G
Sbjct: 477 VRDG 480



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  + + +  AG  P+V ++ +LIRG    G       ++       R+   GLFP+   
Sbjct: 13  AEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGS------FQRGCSQLDRMLEAGLFPNAIL 66

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           YN LI+C CK G ++       R+   C  P+ V++  +I
Sbjct: 67  YNNLISCLCKAGMLAEAESYLKRMPQHC-APNVVSYNIII 105


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 153/314 (48%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L             + LF ++    + PD YT++IL++ FCK G +     V
Sbjct: 366 PDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNV 425

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +++    PD VT++SL+   C  + + +A ++F  +   G   +V +YN +ING C+
Sbjct: 426 LAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCK 485

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A+ LF+EM +          PD ITYS++IDGLCK +G  ++       +   +
Sbjct: 486 IKMVDEAMKLFKEMHHKQ------IFPDVITYSSLIDGLCK-SGRISY-------ALELV 531

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           ++M +       Q   + +  ++D LCK   +  A  L   L   G+ P++ TY IL++G
Sbjct: 532 DEMHYRGQ----QPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKG 587

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G++++ +       +F+ L   G   D+Y Y ++I  FC  G       +  ++  
Sbjct: 588 LCQSGKLEDARK------VFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEE 641

Query: 388 SCFTPDAVTFTSLI 401
           +   PDA T+  +I
Sbjct: 642 NGCIPDAKTYEIII 655



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 148/336 (44%), Gaps = 62/336 (18%)

Query: 109 VLSLFKRLNLTGLFPDR-----YTYNILIN---------CFCKMGRVSHGFVVLGRILRS 154
           +L  FKRL L      R     +++ ILI          C  K   +S  +    +IL++
Sbjct: 199 ILWDFKRLFLKDFLQSRLFNVLHSFKILIEYHKTFIKQKCLLKSFEISIEYTP-PKILKN 257

Query: 155 CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA 214
            + PD +T T+ IK  C + +I +A     K+   G  LD  +Y TLINGLC+ G T  A
Sbjct: 258 GYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAA 317

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
           L L           G + +PD + Y+TIIDG+CK+    +            +      F
Sbjct: 318 LELLRRND------GKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRI------F 365

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
           P V        +  LI G C + KLK A +LF  +    ++P+V T++IL+ G C DG +
Sbjct: 366 PDV------FTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNI 419

Query: 335 DETKHYETVFL-----------------------------LFKRLNSTGLFPDLYTYNIL 365
            E K+   + +                             +F  ++  G+  ++ +YNI+
Sbjct: 420 KEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIM 479

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           IN FCKI  V     +F  +      PD +T++SLI
Sbjct: 480 INGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLI 515



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 156/348 (44%), Gaps = 46/348 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A+ +F  +L   P+ PP   F  + G L K+KHY TVLSL +++   G+  +    NI
Sbjct: 92  NDAVSLFYRLLRQNPT-PPDIEFGKILGSLVKSKHYHTVLSLSQKMEFKGIKLNFLNCNI 150

Query: 131 LINCFCKMGRVSHGFVVLGR------ILRSCFTPDAVTFTSLIKDLCAESRIME------ 178
           LIN FC++G +   F VL R      IL+ CF    +      K LC    I+       
Sbjct: 151 LINSFCQLGLIPFAFSVLTRGVYWIEILKDCFDRKNL---EDFKRLCWIVLILWDFKRLF 207

Query: 179 -----AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
                 + LF  L  F   ++   + T I   C      +++         NG      E
Sbjct: 208 LKDFLQSRLFNVLHSFKILIEY--HKTFIKQKCLLKSFEISIEYTPPKILKNGY-----E 260

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
           PD IT +T I G C +      L F        +  M F+   V       ++  LI+GL
Sbjct: 261 PDTITLTTFIKGFCLKGQIHQALHFH-----DKVIAMGFHLDQV-------SYGTLINGL 308

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK+ + K A EL +      + P+VV YN +I G+C D      KH    F L+    S 
Sbjct: 309 CKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKD------KHVNDAFDLYSEKVSK 362

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +FPD++TYN LI+ FC +G++     +F ++      PD  TF+ L+
Sbjct: 363 RIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILV 410



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 149/334 (44%), Gaps = 29/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL   D ++ M      V S+  L   L K       L L +R +   + PD   YN 
Sbjct: 280 HQALHFHDKVIAMGFHLDQV-SYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNT 338

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK   V+  F +    +     PD  T+ +LI   C   ++ +A  LF K+    
Sbjct: 339 IIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKN 398

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--K 248
              DV+T++ L++G C+ G+   A N+   M   +       +PD +TYS+++DG C   
Sbjct: 399 IIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQS------IKPDVVTYSSLMDGYCLVN 452

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           E   A           S  N M+       VQ    ++  +I+G CKI  +  A +LF+ 
Sbjct: 453 EVNKAE----------SIFNTMSHRGVTANVQ----SYNIMINGFCKIKMVDEAMKLFKE 498

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +    + P+V+TY+ LI GLC  G++           L   ++  G  PD+ TYN +++ 
Sbjct: 499 MHHKQIFPDVITYSSLIDGLCKSGRI------SYALELVDEMHYRGQQPDIITYNSILDA 552

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            CK   V     +  ++      PD  T+T L+K
Sbjct: 553 LCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVK 586



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 118/287 (41%), Gaps = 59/287 (20%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  +  +P V +++ L          +   S+F  ++  G+  +  +YNI+IN FCK+ 
Sbjct: 428 MMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIK 487

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V     +   +      PD +T++SLI  LC   RI  A  L  ++   G + D+ TYN
Sbjct: 488 MVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYN 547

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           ++++ LC+  H   A+ L  ++  G G       PD  TY+ ++ GLC+           
Sbjct: 548 SILDALCKKHHVDKAITLLTKL-KGQG-----IRPDMNTYTILVKGLCQSG--------- 592

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
                                                 KL+ AR++F+ L   G   +V 
Sbjct: 593 --------------------------------------KLEDARKVFEDLLVKGYNLDVY 614

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            Y ++I+G C+ G  DE         L  ++   G  PD  TY I+I
Sbjct: 615 AYTVMIQGFCDKGLFDEA------LALLSKMEENGCIPDAKTYEIII 655



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 7/180 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  +F+ M + R     V S+NI+     K K  D  + LFK ++   +FPD  TY+ 
Sbjct: 455 NKAESIFNTM-SHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSS 513

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK GR+S+   ++  +      PD +T+ S++  LC +  + +A  L TKL+  G
Sbjct: 514 LIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQG 573

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ TY  L+ GLC++G    A  +FE++             D   Y+ +I G C + 
Sbjct: 574 IRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNL------DVYAYTVMIQGFCDKG 627



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 1/149 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL + D M + R  +P + ++N +   L K  H D  ++L  +L   G+ PD  TY IL+
Sbjct: 527 ALELVDEM-HYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILV 585

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              C+ G++     V   +L   +  D   +T +I+  C +    EA AL +K+   GC 
Sbjct: 586 KGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCI 645

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            D  TY  +I  L       +A  L  EM
Sbjct: 646 PDAKTYEIIILSLFEKDENDMAEKLLREM 674


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 164/340 (48%), Gaps = 39/340 (11%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAK-TKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           A+  + YM  M   R  V S N+L   L K +   D    +F+ +   G  PD YTY  L
Sbjct: 139 AMSFYKYMREM-GVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTL 197

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK+G+      +   +     +P  VT++ L+  LC    + EA  LF K++    
Sbjct: 198 INGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAI 257

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           E +VFTY++L++GLC+ G ++ A+ L E M     +      P+ +TYST+I+GLCKE  
Sbjct: 258 EPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHK------PNMVTYSTLINGLCKEGK 311

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
            A         +   L++M       ++Q L  +   +  +I+G C I K + A      
Sbjct: 312 LAE--------AVETLDRM-------KLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDE 356

Query: 309 LPRAGLMPNVVTY-------NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           +    + PN VT+       N++++GLC +G ++ +      F L+  + + G+  D  T
Sbjct: 357 MVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRS------FQLYIGMRTRGISIDAGT 410

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++ L+ CFCK G +     IF  ++     PD   +++++
Sbjct: 411 FDSLVKCFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVV 450



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 122/244 (50%), Gaps = 25/244 (10%)

Query: 161 VTFTSLIKDLCAESRIMEAA-ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
           V+   LIK LC  S  ++AA  +F ++   GC+ D +TY TLINGLC+ G T  A  LF+
Sbjct: 156 VSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFK 215

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM          C P  +TYS ++ GLC +AG+ +      M  F  + K A       +
Sbjct: 216 EMDTKG------CSPSVVTYSCLMHGLC-QAGNVD----EAMGLFDKMKKKA-------I 257

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
           +     +  L+DGLCK      A EL + + R    PN+VTY+ LI GLC +G++ E   
Sbjct: 258 EPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEA-- 315

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
            ET+     R+   GL PD   Y  +IN FC I +          ++    +P+ VT++ 
Sbjct: 316 VETL----DRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTWSL 371

Query: 400 LIKI 403
            +K+
Sbjct: 372 HVKL 375



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 115/247 (46%), Gaps = 25/247 (10%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           F  D  TF  +I  L + +    A  +  +++   C +    + ++  G  R    + A+
Sbjct: 46  FRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLDAI 105

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            +F +M     +FG  C+P   +Y ++   L +E    N L  + M+ +  + +M     
Sbjct: 106 RVFHKM----NDFG--CKPTDKSYISVFAILVEE----NQLKVA-MSFYKYMREMG---- 150

Query: 276 LVRVQCLCLNFLCLIDGLCKIS-KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
            VR   + LN   LI  LCK S  +  A E+F+ +P+ G  P+  TY  LI GLC  G+ 
Sbjct: 151 -VRQSVVSLNV--LIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKT 207

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
            E K       LFK +++ G  P + TY+ L++  C+ G V     +F ++      P+ 
Sbjct: 208 FEAKE------LFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNV 261

Query: 395 VTFTSLI 401
            T++SL+
Sbjct: 262 FTYSSLM 268



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 118/276 (42%), Gaps = 32/276 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M + +   P V +++ L   L +  + D  + LF ++    + P+ +TY+ L
Sbjct: 209 EAKELFKEM-DTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSL 267

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G       +L  ++R    P+ VT+++LI  LC E ++ EA     ++++ G 
Sbjct: 268 MDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGL 327

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS-------TIID 244
           + D   Y  +ING C       A    +EM  G         P+ +T+S        ++ 
Sbjct: 328 KPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQ------ISPNRVTWSLHVKLNNMVVQ 381

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKI 301
           GLC                   LN+    +  +R + + ++   F  L+   CK   L  
Sbjct: 382 GLCTNGN---------------LNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHK 426

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           A  +F  +   G +P+   ++ ++ G  +  ++ E 
Sbjct: 427 AARIFDEMVLDGCVPDHGIWSAVVGGFWDRRKVREA 462


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 156/344 (45%), Gaps = 36/344 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +F+ M   +   P V ++ +L   L K    D    +   ++  GL P   TYN L
Sbjct: 317 EALNLFNEM-KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNAL 375

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ +CK G +   F +L  +  +   P+  T+  LI  LC + ++ +A AL  K+     
Sbjct: 376 IDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKL 435

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              + TYN+LI+G C+      A  L   M     E G+V  PD  TYS  ID LCKE  
Sbjct: 436 SPSLITYNSLIHGQCKVNDLESAYRLLSLM----NENGLV--PDQWTYSVFIDTLCKEG- 488

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
                          + +    F  V+ + +  N   +  LIDG CK+ K+ +A  L + 
Sbjct: 489 --------------RVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLER 534

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +     +PN  TYN+LI GLC + +M E         L  ++ + G+ P + TY ILI  
Sbjct: 535 MLNDACLPNSYTYNVLIEGLCKEKKMKEASS------LVAKMLTMGVKPTVVTYTILIGE 588

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
             K G       +F  ++   + PD  T+T+      ++++F Q
Sbjct: 589 MLKDGAFDHALKVFNHMVSLGYQPDVCTYTAF-----LHAYFSQ 627



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 158/329 (48%), Gaps = 28/329 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P +  +N +   L+K    D + +++  L    + P+ YT+N ++N +CK+G V    +
Sbjct: 156 KPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAEL 215

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              +I+++   PD  T+TSLI   C    +  A  +F  +   GC+ +  +Y  LI+GLC
Sbjct: 216 YASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLC 275

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    AL LF +M   N      C P   TY+ +I  L   +GS   +      + + 
Sbjct: 276 EAGRINEALKLFADMTEDN------CCPTVRTYTVLIYAL---SGSGRKV-----EALNL 321

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            N+M        V      +  LIDGLCK +K+  AR++   +   GL+P+VVTYN LI 
Sbjct: 322 FNEMKEKGCEPNVH----TYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALID 377

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C +G +D+       F +   + S    P+  TYN LI   CK  +V     +  ++L
Sbjct: 378 GYCKEGMIDDA------FEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKML 431

Query: 387 PSCFTPDAVTFTSLI----KILEINSFFR 411
               +P  +T+ SLI    K+ ++ S +R
Sbjct: 432 ERKLSPSLITYNSLIHGQCKVNDLESAYR 460



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 143/325 (44%), Gaps = 24/325 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   L K +     ++L  ++    L P   TYN LI+  CK+  +   + +
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRL 461

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +  +   PD  T++  I  LC E R+ EA  LF  ++  G + +   Y  LI+G C+
Sbjct: 462 LSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCK 521

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G   VA +L E M N        C P++ TY+ +I+GLCKE             + S +
Sbjct: 522 VGKIDVAYSLLERMLND------ACLPNSYTYNVLIEGLCKEK--------KMKEASSLV 567

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            KM      + V+   + +  LI  + K      A ++F  +   G  P+V TY   +  
Sbjct: 568 AKML----TMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHA 623

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
             + G ++E         +  ++N  G+ PDL TY +LI+ + ++G     F     ++ 
Sbjct: 624 YFSQGMLEEVDD------VIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVD 677

Query: 388 SCFTPDAVTFTSLIKILEINSFFRQ 412
           +   P     + LIK L   +  ++
Sbjct: 678 TGCKPSLYIVSILIKNLSHENRMKE 702



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 156/394 (39%), Gaps = 87/394 (22%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ + + ML  + S P + ++N L     K    ++   L   +N  GL PD++TY++
Sbjct: 421 HKAMALLNKMLERKLS-PSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSV 479

Query: 131 -----------------------------------LINCFCKMGRVSHGFVVLGRILRSC 155
                                              LI+ +CK+G++   + +L R+L   
Sbjct: 480 FIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA 539

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             P++ T+  LI+ LC E ++ EA++L  K+   G +  V TY  LI  + + G    AL
Sbjct: 540 CLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHAL 599

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTII-----DGLCKEAGSANFLGFSCMASFSALNKM 270
            +F  M +      +  +PD  TY+  +      G+ +E               + +N+ 
Sbjct: 600 KVFNHMVS------LGYQPDVCTYTAFLHAYFSQGMLEEVDDV----------IAKMNEE 643

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                LV        +  LIDG  ++     A +  + +   G  P++   +ILI+ L +
Sbjct: 644 GILPDLV-------TYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSH 696

Query: 331 DGQMDETK-----------------------HYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           + +M ET+                        YE    LF+++   G   D+  Y  LI 
Sbjct: 697 ENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIA 756

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            FC+  R+     +   +     +P    + SL+
Sbjct: 757 GFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLL 790



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 110/269 (40%), Gaps = 35/269 (13%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           F P    + +++  L     I E   ++ +L       +++T+N ++NG C+ G+ + A 
Sbjct: 155 FKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEA- 213

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN-FLGFSCMASFSALNKMAFYF 274
              E  A+   + G+   PD  TY+++I G C+  G  N +  F  M           Y 
Sbjct: 214 ---ELYASKIVQAGL--HPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYT 268

Query: 275 PLVRVQC----------------------LCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
            L+   C                          +  LI  L    +   A  LF  +   
Sbjct: 269 NLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEK 328

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  PNV TY +LI GLC + +MDE +       +   ++  GL P + TYN LI+ +CK 
Sbjct: 329 GCEPNVHTYTVLIDGLCKENKMDEARK------MLSEMSEKGLIPSVVTYNALIDGYCKE 382

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G +   F I   +  +   P+  T+  LI
Sbjct: 383 GMIDDAFEILDLMESNSCGPNTRTYNELI 411



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 115/295 (38%), Gaps = 48/295 (16%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + AL VF++M+++   +P V ++             + V  +  ++N  G+ PD  TY +
Sbjct: 596 DHALKVFNHMVSL-GYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTV 654

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME------------ 178
           LI+ + ++G     F  L  ++ +   P     + LIK+L  E+R+ E            
Sbjct: 655 LIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSN 714

Query: 179 -----------------AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
                            A  LF K+   GC +DV  Y  LI G C+      A  L   M
Sbjct: 715 VNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHM 774

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
                E G+   P    Y++++D  CK    A  +        + L       PL+    
Sbjct: 775 K----ERGM--SPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGL------LPLLE--- 819

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
              ++  L+ GL      + A+ +F  L   G   + V + +LI GL     +DE
Sbjct: 820 ---SYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDE 871



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 41/200 (20%), Positives = 76/200 (38%), Gaps = 22/200 (11%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+ +  L     + +  +    L   +   G+ P    YN L++C CK+G  +    ++ 
Sbjct: 748 VSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVD 807

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR-- 207
            ++ +   P   ++  L+  L  E    +A A+F  L   G   D   +  LI+GL +  
Sbjct: 808 AMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRD 867

Query: 208 -----------------TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
                            T    +A      +A  N   G + + +    S     L + +
Sbjct: 868 LVDECSELIDIMEEKDATAQADIACAALMRLAAANSTKGALEDHELRGLSVNHGELTQLS 927

Query: 251 GSANFL---GFSCMASFSAL 267
           G  N L   G  C+A+F+A+
Sbjct: 928 GLVNNLISVGLGCVATFAAV 947


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 172/383 (44%), Gaps = 64/383 (16%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           G + SI   +A  +F  M++ +P  P +  F  L    A  + Y+TV+   +++ L G+ 
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQP-LPSIVDFTRLLTATANLRRYETVIYFSQKMELYGIS 103

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
            D Y++ ILI+CFC+  R+S    VLG++++  + P  VTF SL+   C  +RI +A +L
Sbjct: 104 HDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSL 163

Query: 183 -----------------------------------FTKLRVFGCELDVFTYNTLINGLCR 207
                                                ++   G   DV TYNTL+ GLC 
Sbjct: 164 VILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY 223

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG--SANFLGFSCMASFS 265
           +G    A  +  +M   +        PD +T++ +ID   K+     A  L    + S  
Sbjct: 224 SGRWSDAARMLRDMMKRS------INPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSV 277

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             N + +                +I+GLC   +L  A++ F  +   G  PNVVTYN LI
Sbjct: 278 DPNNVTYN--------------SIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLI 323

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C    +DE         LF+R++  G   D++TYN LI+ +C++G++     IF  +
Sbjct: 324 SGFCKFRMVDEGMK------LFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM 377

Query: 386 LPSCFTPDAVTFTSLIKILEINS 408
           +    TPD +T   L+  L +N 
Sbjct: 378 VSRRVTPDIITHCILLHGLCVNG 400



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 148/319 (46%), Gaps = 32/319 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V  +N L   L K    +  L L   +   GL  D  TYN L+   C  GR S    
Sbjct: 173 EPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAAR 232

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +++    PD VTFT+LI     +  + EA  L+ ++     + +  TYN++INGLC
Sbjct: 233 MLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLC 292

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMA 262
             G    A   F+ MA+        C P+ +TY+T+I G CK    + G   F   SC  
Sbjct: 293 MHGRLYDAKKTFDLMASKG------CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSC-- 344

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
                N   F +              LI G C++ KL++A ++F  +    + P+++T+ 
Sbjct: 345 --EGFNADIFTYN------------TLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHC 390

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           IL+ GLC +G++      E+  + F  +  +  +  +  YNI+I+  CK  +V   + +F
Sbjct: 391 ILLHGLCVNGEI------ESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELF 444

Query: 383 GRILPSCFTPDAVTFTSLI 401
            R+      PDA T+T +I
Sbjct: 445 CRLPVEGVKPDARTYTIMI 463



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 125/273 (45%), Gaps = 26/273 (9%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +F  L     K  + D    L+K +  + + P+  TYN +IN  C  GR+  
Sbjct: 240 RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYD 299

Query: 144 GFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
                  +  + CF P+ VT+ +LI   C    + E   LF ++   G   D+FTYNTLI
Sbjct: 300 AKKTFDLMASKGCF-PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLI 358

Query: 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA 262
           +G C+ G   VAL++F  M +          PD IT+  ++ GLC      N    S + 
Sbjct: 359 HGYCQVGKLRVALDIFCWMVSRR------VTPDIITHCILLHGLC-----VNGEIESALV 407

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
            F  + +   Y  +V        +  +I GLCK  K++ A ELF  LP  G+ P+  TY 
Sbjct: 408 KFDDMRESEKYIGIVA-------YNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYT 460

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
           I+I GLC +G   E         L +R+   G+
Sbjct: 461 IMILGLCKNGPRREADE------LIRRMKEEGI 487



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 119/259 (45%), Gaps = 28/259 (10%)

Query: 8   NGRMRFADRLSRKPTS-SISENEPSYPTTTATLRLTVK----DRASLEQFLKERCKSSGE 62
           +GR   A R+ R     SI+   P   T TA + + VK    D A  ++  KE  +SS +
Sbjct: 224 SGRWSDAARMLRDMMKRSIN---PDVVTFTALIDVFVKQGNLDEA--QELYKEMIQSSVD 278

Query: 63  -GDITSITPNEALCV----------FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
             ++T  +    LC+          FD M + +   P V ++N L     K +  D  + 
Sbjct: 279 PNNVTYNSIINGLCMHGRLYDAKKTFDLMAS-KGCFPNVVTYNTLISGFCKFRMVDEGMK 337

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           LF+R++  G   D +TYN LI+ +C++G++     +   ++    TPD +T   L+  LC
Sbjct: 338 LFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLC 397

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
               I  A   F  +R     + +  YN +I+GLC+      A  LF  +       GV 
Sbjct: 398 VNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVE----GV- 452

Query: 232 CEPDAITYSTIIDGLCKEA 250
            +PDA TY+ +I GLCK  
Sbjct: 453 -KPDARTYTIMILGLCKNG 470


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 151/331 (45%), Gaps = 25/331 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  VFD  +  R  RP V SFN L     K  + D    L   +  +   PD +TY+ L
Sbjct: 258 DAQKVFDE-ITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSAL 316

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK  ++     +   +      P+ V FT+LI       +I      + K+   G 
Sbjct: 317 INALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGL 376

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + D+  YNTL+NG C+ G  + A N+ + M            PD +TY+T+IDG C+   
Sbjct: 377 QPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG------LRPDKVTYTTLIDGFCRGGD 430

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
               L        + +        L RV      F  LI G+CK  ++  A    + + R
Sbjct: 431 VDTALEIRKEMDQNGIE-------LDRV-----GFSALICGMCKEGRVIDAERALREMLR 478

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           AG+ P+ VTY +++   C  G        +T F L K + S G  P++ TYN+L+N  CK
Sbjct: 479 AGMKPDDVTYTMMMDAFCKKGDA------QTGFKLLKEMQSDGHIPNVVTYNVLLNGLCK 532

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +G++ +  ++   +L     PD +T+ +L++
Sbjct: 533 LGQMKNADMLLDAMLNVGVVPDDITYNTLLE 563



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 129/280 (46%), Gaps = 27/280 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    F  L    ++    D +   ++++   GL PD   YN L+N FCK G +     +
Sbjct: 343 PNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNI 402

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  ++R    PD VT+T+LI   C    +  A  +  ++   G ELD   ++ LI G+C+
Sbjct: 403 VDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCK 462

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  I A     EM           +PD +TY+ ++D  CK+  +    GF  +    + 
Sbjct: 463 EGRVIDAERALREMLRAG------MKPDDVTYTMMMDAFCKKGDAQT--GFKLLKEMQSD 514

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                + P V      + +  L++GLCK+ ++K A  L  ++   G++P+ +TYN L+ G
Sbjct: 515 G----HIPNV------VTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEG 564

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
             +    + +KHY       K+    G+  DL +Y  L+N
Sbjct: 565 --HHRHANASKHY-------KQKPEIGIVADLASYKSLVN 595



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 111/257 (43%), Gaps = 36/257 (14%)

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           IL + F  +   F  L+   C E  I +A  +F ++        V ++NTLING C+ G+
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGN 290

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
             V   L   M            PD  TYS +I+ LCKE                  NKM
Sbjct: 291 LDVGFRLKHHMEKSR------TRPDVFTYSALINALCKE------------------NKM 326

Query: 271 AFYFPLVRVQC---LCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
                L    C   L  N   F  LI G  +  ++ + +E +Q +   GL P++V YN L
Sbjct: 327 DGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTL 386

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + G C +G +   ++   V  + +R    GL PD  TY  LI+ FC+ G V +   I   
Sbjct: 387 VNGFCKNGDLVAARN--IVDGMIRR----GLRPDKVTYTTLIDGFCRGGDVDTALEIRKE 440

Query: 385 ILPSCFTPDAVTFTSLI 401
           +  +    D V F++LI
Sbjct: 441 MDQNGIELDRVGFSALI 457



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+D + K++        +  +  AG   NV  +NIL+   C +G + + +       +F 
Sbjct: 211 LLDRMMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQK------VFD 264

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +    L P + ++N LIN +CK+G +  GF +   +  S   PD  T+++LI  L
Sbjct: 265 EITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINAL 320


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 160/350 (45%), Gaps = 44/350 (12%)

Query: 72  EALCVFDYMLN--MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           EA   FD ML+  + P+ P  T   +L     K  +    LS+F+ L+  G+ PD  T +
Sbjct: 273 EAAKYFDEMLDHGLMPNNPLYT---VLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCS 329

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
             I+   K GRV     V   +      PD  T++SLI   C +  + +A  L  ++ + 
Sbjct: 330 AFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK 389

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   ++F YN L++GLC++G    A  LF+ M     E G+  EPD++TYST+IDG CK 
Sbjct: 390 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMP----EKGL--EPDSVTYSTMIDGYCKS 443

Query: 250 AGSAN-FLGFSCMASFSALNKMAFYFPLVRVQC---------------------LCLNFL 287
              A  F  F  M S         Y  LV   C                       L+F 
Sbjct: 444 ENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN 503

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH-------- 339
            LIDG CK  K++ A +LFQ +    +MP+ VTY  +I   C  G+M+E           
Sbjct: 504 TLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQER 563

Query: 340 ---YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
               +TVF LF+++ + G+ PD  TY ++I   CK   +   F +   ++
Sbjct: 564 NLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVV 613



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 149/344 (43%), Gaps = 34/344 (9%)

Query: 79  YMLNM--RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           Y+L +  R  +P   +F       +KT         F  +   GL P+   Y +LIN   
Sbjct: 242 YLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHF 301

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           K G +     +   +      PD  T ++ I  L    R+ EA  +F++L+  G   DVF
Sbjct: 302 KAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVF 361

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           TY++LI+G C+ G    A  L +EM       G+   P+   Y+ ++DGLCK        
Sbjct: 362 TYSSLISGFCKQGEVEKAFELHDEMCLK----GIA--PNIFIYNALVDGLCKS------- 408

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
                       K+    P   ++   + +  +IDG CK   +  A  LF  +P  G+ P
Sbjct: 409 -----GDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQP 463

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           +   YN L+ G C +G M      E    LF+ +   G F    ++N LI+ +CK  ++ 
Sbjct: 464 HSFVYNALVHGCCKEGDM------EKAMNLFREMLQKG-FATTLSFNTLIDGYCKSCKIQ 516

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
               +F  ++     PD VT+T++I       K+ E N  F+++
Sbjct: 517 EASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEM 560



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 154/369 (41%), Gaps = 67/369 (18%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  ++ L    A     +    L   ++ +G+ PD + YN +I+C  K G++     
Sbjct: 182 KPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAST 241

Query: 147 VLGRILRSCFTPDAVTF-----------------------------------TSLIKDLC 171
            L  I      PDAVTF                                   T LI    
Sbjct: 242 YLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHF 301

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
               +MEA ++F  L   G   DV T +  I+GL + G    AL +F E+     E G+V
Sbjct: 302 KAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK----EKGLV 357

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
             PD  TYS++I G CK+             +F   ++M     L  +      +  L+D
Sbjct: 358 --PDVFTYSSLISGFCKQG--------EVEKAFELHDEMC----LKGIAPNIFIYNALVD 403

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GLCK   ++ AR+LF  +P  GL P+ VTY+ +I G C    + E       F LF  + 
Sbjct: 404 GLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAE------AFSLFHEMP 457

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KIL 404
           S G+ P  + YN L++  CK G +     +F  +L   F    ++F +LI       KI 
Sbjct: 458 SKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQ 516

Query: 405 EINSFFRQV 413
           E +  F+++
Sbjct: 517 EASQLFQEM 525



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 138/301 (45%), Gaps = 31/301 (10%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           GL P+ YTY I+    C+  R++   +    + ++   PD    ++LI     E  I E 
Sbjct: 5   GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEV 64

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             +   +   G  +++ TYN LI+GLC+ G    A  + + M        + C+P++ T+
Sbjct: 65  LRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMIT------LGCKPNSRTF 118

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
             +I+G C+E      L          + K       V       ++  +I+GLC    L
Sbjct: 119 CLLIEGYCREHNMGRALEL-----LDEMEKRNLVPSAV-------SYGAMINGLCHCKDL 166

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
            +A +L + +  +GL PNVV Y+ LI G  ++G+++E +       L   ++ +G+ PD+
Sbjct: 167 SLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARR------LLDGMSCSGVAPDI 220

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQ 412
           + YN +I+C  K G++         I      PDAVTF + I       K+ E   +F +
Sbjct: 221 FCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 280

Query: 413 V 413
           +
Sbjct: 281 M 281



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 155/398 (38%), Gaps = 75/398 (18%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +F + L+     P V + +     L K       L +F  L   GL PD +TY+ L
Sbjct: 308 EALSIFRH-LHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSL 366

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ FCK G V   F +   +      P+   + +L+  LC    I  A  LF  +   G 
Sbjct: 367 ISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGL 426

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           E D  TY+T+I+G C++ +   A +LF EM +     GV  +P +  Y+ ++ G CKE  
Sbjct: 427 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK----GV--QPHSFVYNALVHGCCKEGD 480

Query: 252 SANFL---------GFSCMASFSAL-----------NKMAFYFPLVRVQCL--CLNFLCL 289
               +         GF+   SF+ L                +  ++  Q +   + +  +
Sbjct: 481 MEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTV 540

Query: 290 IDGLCKISKLKIARELFQSLPR-----------------AGLMPNVVTYNILIRGLCNDG 332
           ID  CK  K++ A  LF+ +                    G+ P+ VTY ++I   C + 
Sbjct: 541 IDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKED 600

Query: 333 QMDE-----------------TKHYETVFLLFKRLNST------------GLFPDLYTYN 363
            + E                 T H   +  L KR + T            GL P L   +
Sbjct: 601 NLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACS 660

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            L+  F + G++     +F  +      PD  T   L+
Sbjct: 661 TLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLV 698



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 147/355 (41%), Gaps = 38/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA   F+ M      +P   + + L     +    D VL +   +   G+  +  TYN+
Sbjct: 27  NEAKLTFEEM-QKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNV 85

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G++     +L  ++     P++ TF  LI+  C E  +  A  L  ++    
Sbjct: 86  LIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRN 145

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE- 249
                 +Y  +INGLC      +A  L E+M           +P+ + YST+I G   E 
Sbjct: 146 LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG------LKPNVVVYSTLIMGYASEG 199

Query: 250 --------------AGSA------NFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNF 286
                         +G A      N +  SC++    + + + Y   ++ + L    + F
Sbjct: 200 RIEEARRLLDGMSCSGVAPDIFCYNAI-ISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 258

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
              I G  K  K+  A + F  +   GLMPN   Y +LI G    G + E         +
Sbjct: 259 GAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME------ALSI 312

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           F+ L++ G+ PD+ T +  I+   K GRV     +F  +      PD  T++SLI
Sbjct: 313 FRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 367



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 139/366 (37%), Gaps = 77/366 (21%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL VF   L  +   P V +++ L     K    +    L   + L G+ P+ + YN 
Sbjct: 342 QEALKVFSE-LKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNA 400

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G +     +   +      PD+VT++++I   C    + EA +LF ++   G
Sbjct: 401 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG 460

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANG--------NGEFGVVCE--------- 233
            +   F YN L++G C+ G    A+NLF EM           N      C+         
Sbjct: 461 VQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQ 520

Query: 234 -----------PDAITYSTIIDGLCKEAG--SANFLGFSCMAS--------FSALNKMAF 272
                      PD +TY+T+ID  CK      AN L F  M          F+   KM  
Sbjct: 521 LFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLL-FKEMQERNLIVDTVFALFEKMVA 579

Query: 273 ---------YFPLVRVQCLCLNFL----------------------CLIDGLCKISKLKI 301
                    Y  ++   C   N +                       LI  LCK   L  
Sbjct: 580 KGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTE 639

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A +L   +   GL P++   + L+R     G+MDE         +F+ + S GL PD  T
Sbjct: 640 ASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATR------VFEGVKSLGLVPDTTT 693

Query: 362 YNILIN 367
              L+N
Sbjct: 694 LIDLVN 699



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 6/139 (4%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           DTV +LF+++   G+ PD  TY ++I   CK   +   F +   ++             L
Sbjct: 568 DTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLL 627

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           I  LC    + EA+ L  ++   G +  +   +TL+      G    A  +FE    G  
Sbjct: 628 ITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFE----GVK 683

Query: 227 EFGVVCEPDAITYSTIIDG 245
             G+V  PD  T   +++G
Sbjct: 684 SLGLV--PDTTTLIDLVNG 700


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 156/341 (45%), Gaps = 30/341 (8%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EG+I+     +A  VFD  +  R  +P V SFN L     K  + D    L  ++  +  
Sbjct: 253 EGNIS-----DAQKVFDE-ITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRT 306

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD +TY+ LIN  CK  ++     +   + +    P+ V FT+LI        I     
Sbjct: 307 RPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKE 366

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
            + K+   G + D+  YNTL+NG C+ G  + A N+ + M            PD ITY+T
Sbjct: 367 SYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG------LRPDKITYTT 420

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +IDG C+       L        + +        L RV      F  L+ G+CK  ++  
Sbjct: 421 LIDGFCRGGDVETALEIRKEMDQNGIE-------LDRV-----GFSALVCGMCKEGRVID 468

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A    + + RAG+ P+ VTY +++   C  G        +T F L K + S G  P + T
Sbjct: 469 AERALREMLRAGIKPDDVTYTMMMDAFCKKGDA------QTGFKLLKEMQSDGHVPSVVT 522

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           YN+L+N  CK+G++ +  ++   +L     PD +T+ +L++
Sbjct: 523 YNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLE 563



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 127/280 (45%), Gaps = 27/280 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    F  L    ++    D +   ++++   GL PD   YN L+N FCK G +     +
Sbjct: 343 PNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNI 402

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  ++R    PD +T+T+LI   C    +  A  +  ++   G ELD   ++ L+ G+C+
Sbjct: 403 VDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCK 462

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  I A     EM           +PD +TY+ ++D  CK+  +    GF  +    + 
Sbjct: 463 EGRVIDAERALREMLRAG------IKPDDVTYTMMMDAFCKKGDAQT--GFKLLKEMQSD 514

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                + P V      + +  L++GLCK+ ++K A  L  ++   G++P+ +TYN L+ G
Sbjct: 515 G----HVPSV------VTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEG 564

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
             +    + +K Y        +    G+  DL +Y  ++N
Sbjct: 565 --HHRHANSSKRY-------IQKPEIGIVADLASYKSIVN 595



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  L++  CK   +  A+++F  + +  L P VV++N LI G C  G +DE       F 
Sbjct: 243 FNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEG------FR 296

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L  ++  +   PD++TY+ LIN  CK  ++     +F  +      P+ V FT+LI
Sbjct: 297 LKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLI 352



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+D + K++        +  +  AG   NV  +NIL+   C +G + + +       +F 
Sbjct: 211 LLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQK------VFD 264

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +    L P + ++N LIN +CK+G +  GF +  ++  S   PD  T+++LI  L
Sbjct: 265 EITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINAL 320


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 172/383 (44%), Gaps = 64/383 (16%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           G + SI   +A  +F  M++ +P  P +  F  L    A  + Y+TV+   +++ L G+ 
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQP-LPSIVDFTRLLTATANLRRYETVIYFSQKMELYGIS 103

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
            D Y++ ILI+CFC+  R+S    VLG++++  + P  VTF SL+   C  +RI +A +L
Sbjct: 104 HDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSL 163

Query: 183 -----------------------------------FTKLRVFGCELDVFTYNTLINGLCR 207
                                                ++   G   DV TYNTL+ GLC 
Sbjct: 164 VILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCY 223

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG--SANFLGFSCMASFS 265
           +G    A  +  +M   +        PD +T++ +ID   K+     A  L    + S  
Sbjct: 224 SGRWSDAARMLRDMMKRS------INPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSV 277

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             N + +                +I+GLC   +L  A++ F  +   G  PNVVTYN LI
Sbjct: 278 DPNNVTYN--------------SIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLI 323

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C    +DE         LF+R++  G   D++TYN LI+ +C++G++     IF  +
Sbjct: 324 SGFCKFRMVDEGMK------LFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM 377

Query: 386 LPSCFTPDAVTFTSLIKILEINS 408
           +    TPD +T   L+  L +N 
Sbjct: 378 VSRRVTPDIITHCILLHGLCVNG 400



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 148/319 (46%), Gaps = 32/319 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V  +N L   L K    +  L L   +   GL  D  TYN L+   C  GR S    
Sbjct: 173 EPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAAR 232

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +++    PD VTFT+LI     +  + EA  L+ ++     + +  TYN++INGLC
Sbjct: 233 MLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLC 292

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMA 262
             G    A   F+ MA+        C P+ +TY+T+I G CK    + G   F   SC  
Sbjct: 293 MHGRLYDAKKTFDLMASKG------CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSC-- 344

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
                N   F +              LI G C++ KL++A ++F  +    + P+++T+ 
Sbjct: 345 --EGFNADIFTYN------------TLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHC 390

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           IL+ GLC +G++      E+  + F  +  +  +  +  YNI+I+  CK  +V   + +F
Sbjct: 391 ILLHGLCVNGEI------ESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELF 444

Query: 383 GRILPSCFTPDAVTFTSLI 401
            R+      PDA T+T +I
Sbjct: 445 CRLPVEGVKPDARTYTIMI 463



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 171/395 (43%), Gaps = 68/395 (17%)

Query: 47  ASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY 106
           AS     +ER ++    ++  I  ++A  +F  ML  RP  P +  F  +   +AK   +
Sbjct: 566 ASHHHHYRERLRN----ELHCIKFDDAFSLFCEMLQSRPI-PSIVDFTRVLTVIAKMNKF 620

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D V+ L+ ++   G+  D Y++ ILI+CFC+  R+S    +LG++++  F P  VT  SL
Sbjct: 621 DIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSL 680

Query: 167 IKDLCAESRIMEAAALFTKLRVFG-----------------------------------C 191
           +   C  +R  EA +L   +  FG                                    
Sbjct: 681 LNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGI 740

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D  TYNTLI+GL  +G    A  L  +M           +P+ I ++ +ID   KE  
Sbjct: 741 RADAVTYNTLISGLSNSGRWTDAARLLRDMVKRK------IDPNVIFFTALIDTFVKEG- 793

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSL 309
                        + L     Y  ++R   +     +  LI+G C    L  A+ +F  +
Sbjct: 794 -------------NLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM 840

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G  P+VVTYN LI G C      ++K  E    LF  +   GL  D +TYN LI+ +
Sbjct: 841 VSKGCFPDVVTYNTLITGFC------KSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 894

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           C+ G+++    +F R++    +PD VT+  L+  L
Sbjct: 895 CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCL 929



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 125/273 (45%), Gaps = 26/273 (9%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +F  L     K  + D    L+K +  + + P+  TYN +IN  C  GR+  
Sbjct: 240 RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYD 299

Query: 144 GFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
                  +  + CF P+ VT+ +LI   C    + E   LF ++   G   D+FTYNTLI
Sbjct: 300 AKKTFDLMASKGCF-PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLI 358

Query: 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA 262
           +G C+ G   VAL++F  M +          PD IT+  ++ GLC      N    S + 
Sbjct: 359 HGYCQVGKLRVALDIFCWMVSRR------VTPDIITHCILLHGLC-----VNGEIESALV 407

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
            F  + +   Y  +V        +  +I GLCK  K++ A ELF  LP  G+ P+  TY 
Sbjct: 408 KFDDMRESEKYIGIVA-------YNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYT 460

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
           I+I GLC +G   E         L +R+   G+
Sbjct: 461 IMILGLCKNGPRREADE------LIRRMKEEGI 487



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 126/283 (44%), Gaps = 30/283 (10%)

Query: 84   RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK---MGR 140
            R   P V  F  L     K  +     +L+K +    + P+ +TYN LIN FC    +G 
Sbjct: 773  RKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD 832

Query: 141  VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
              + F ++  + + CF PD VT+ +LI   C   R+ +   LF ++   G   D FTYNT
Sbjct: 833  AKYMFDLM--VSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 889

Query: 201  LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
            LI+G C+ G   VA  +F  M     + GV   PD +TY+ ++D LC        L    
Sbjct: 890  LIHGYCQAGKLNVAQKVFNRMV----DCGV--SPDIVTYNILLDCLCNNGKIEKAL---- 939

Query: 261  MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                  L K      ++        +  +I GLC+  KLK A  LF+SL R G+ P+ + 
Sbjct: 940  -VMVEDLQKSEMDVDII-------TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIA 991

Query: 321  YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            Y  +I GLC  G   E         L +R+   G  P    Y+
Sbjct: 992  YITMISGLCRKGLQREADK------LCRRMKEDGFMPSERIYD 1028



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 142/331 (42%), Gaps = 60/331 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N AL VF Y +  +  R    ++N L   L+ +  +     L + +    + P+   +  
Sbjct: 726 NNALEVF-YCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 784

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F K G +     +   ++R    P+  T+ SLI   C    + +A  +F  +   G
Sbjct: 785 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 844

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  DV TYNTLI G C++      + LF EM    G  G     DA TY+T+I G C +A
Sbjct: 845 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTY-QGLVG-----DAFTYNTLIHGYC-QA 897

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G                                              KL +A+++F  + 
Sbjct: 898 G----------------------------------------------KLNVAQKVFNRMV 911

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P++VTYNIL+  LCN+G++      E   ++ + L  + +  D+ TYNI+I   C
Sbjct: 912 DCGVSPDIVTYNILLDCLCNNGKI------EKALVMVEDLQKSEMDVDIITYNIIIQGLC 965

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +  ++   + +F  +      PDA+ + ++I
Sbjct: 966 RTDKLKEAWCLFRSLTRKGVKPDAIAYITMI 996



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 9/175 (5%)

Query: 79   YMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
            YM ++  S+   P V ++N L     K+K  +  + LF  +   GL  D +TYN LI+ +
Sbjct: 835  YMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 894

Query: 136  CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            C+ G+++    V  R++    +PD VT+  L+  LC   +I +A  +   L+    ++D+
Sbjct: 895  CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDI 954

Query: 196  FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             TYN +I GLCRT     A  LF  +       GV  +PDAI Y T+I GLC++ 
Sbjct: 955  ITYNIIIQGLCRTDKLKEAWCLFRSLTRK----GV--KPDAIAYITMISGLCRKG 1003



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 115/485 (23%), Positives = 192/485 (39%), Gaps = 118/485 (24%)

Query: 8   NGRMRFADRLSRKPTS-SISENEPSYPTTTATLRLTVK--DRASLEQFLKERCKSSGE-G 63
           +GR   A R+ R     SI+   P   T TA + + VK  +    ++  KE  +SS +  
Sbjct: 224 SGRWSDAARMLRDMMKRSIN---PDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPN 280

Query: 64  DITSITPNEALCV----------FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           ++T  +    LC+          FD M + +   P V ++N L     K +  D  + LF
Sbjct: 281 NVTYNSIINGLCMHGRLYDAKKTFDLMAS-KGCFPNVVTYNTLISGFCKFRMVDEGMKLF 339

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVS-------------------------HGFVVL 148
           +R++  G   D +TYN LI+ +C++G++                          HG  V 
Sbjct: 340 QRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVN 399

Query: 149 GRILRSCFTPDA----------VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G I  +    D           V +  +I  LC   ++ +A  LF +L V G + D  TY
Sbjct: 400 GEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTY 459

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA---------------------- 236
             +I GLC+ G    A  L   M     E G++C+ +A                      
Sbjct: 460 TIMILGLCKNGPRREADELIRRMK----EEGIICQMNAEDDHLEEHSSSNKEISLSLREI 515

Query: 237 ----------------ITYSTIIDGLCKEA----GSANFLGFSCMASFSALNKMAFYFPL 276
                           I +S+ + G  +         N    S   SFS  +    Y   
Sbjct: 516 WERSKSNPFWMQRLIPIAFSSSVKGFVRRHYLLLERGNNPETSLSRSFSGASHHHHYRER 575

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
           +R +  C+ F       C         E+ QS P    +P++V +    R L    +M++
Sbjct: 576 LRNELHCIKFDDAFSLFC---------EMLQSRP----IPSIVDFT---RVLTVIAKMNK 619

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
              ++ V  L+ ++ + G+  DLY++ ILI+CFC+  R+S    + G+++   F P  VT
Sbjct: 620 ---FDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVT 676

Query: 397 FTSLI 401
             SL+
Sbjct: 677 LGSLL 681



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 115/261 (44%), Gaps = 31/261 (11%)

Query: 72   EALCVFDYMLNMRPSRPPVTSFNILF------GCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
            EA  ++  M+  R   P V ++N L       GCL   K+      +F  +   G FPD 
Sbjct: 797  EARNLYKEMIR-RSVVPNVFTYNSLINGFCIHGCLGDAKY------MFDLMVSKGCFPDV 849

Query: 126  YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
             TYN LI  FCK  RV  G  +   +       DA T+ +LI   C   ++  A  +F +
Sbjct: 850  VTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNR 909

Query: 186  LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
            +   G   D+ TYN L++ LC  G    AL + E++           + D ITY+ II G
Sbjct: 910  MVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSE------MDVDIITYNIIIQG 963

Query: 246  LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
            LC+   +       C+  F +L +         V+   + ++ +I GLC+    + A +L
Sbjct: 964  LCR---TDKLKEAWCL--FRSLTRKG-------VKPDAIAYITMISGLCRKGLQREADKL 1011

Query: 306  FQSLPRAGLMPNVVTYNILIR 326
             + +   G MP+   Y+  +R
Sbjct: 1012 CRRMKEDGFMPSERIYDETLR 1032



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            N A  VF+ M++   S P + ++NIL  CL      +  L + + L  + +  D  TYNI
Sbjct: 901  NVAQKVFNRMVDCGVS-PDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNI 959

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            +I   C+  ++   + +   + R    PDA+ + ++I  LC +    EA  L  +++  G
Sbjct: 960  IIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDG 1019


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1164

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 146/329 (44%), Gaps = 38/329 (11%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++ ++   P V S++ +     +    D V  L +++   GL P+ YTY  +I   C++ 
Sbjct: 694 LMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRIC 753

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           +++        ++     PD + +T+L+   C    I  A+  F ++       DV TY 
Sbjct: 754 KLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYT 813

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVC---EPDAITYSTIIDGLCKEAGSANFL 256
            +I+G C+ G  + A  LF EM         +C   EPD IT++ +++G CK AG     
Sbjct: 814 AIISGFCQIGDMVEAGKLFHEM---------LCRGLEPDIITFTELMNGYCK-AGHIK-- 861

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSLPRA 312
                 +F   N M        +Q  C    + +  LIDGLCK   L  A EL   + + 
Sbjct: 862 -----DAFRVHNHM--------IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 908

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           GL PN+ TYN ++ GLC  G ++E         L     + GL  D  TY  L++ +CK 
Sbjct: 909 GLQPNIFTYNSIVNGLCKSGNIEEA------VKLVGEFEAAGLNADTVTYTTLMDAYCKS 962

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G +     I   +L     P  VTF  L+
Sbjct: 963 GEMDKAQEILTEMLGKGLQPTIVTFNVLM 991



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 26/313 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V S+NI+   + +    +    L   + L G  PD  +Y+ +IN +C+ G +   + ++ 
Sbjct: 669 VASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIE 728

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           ++ +    P++ T+ S+I  LC   ++ EA   F+++   G   D   Y TL++G C+ G
Sbjct: 729 KMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRG 788

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A   F EM + +        PD +TY+ II G C+            +       K
Sbjct: 789 DIRAASKFFYEMHSRD------ITPDVLTYTAIISGFCQ------------IGDMVEAGK 830

Query: 270 MAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
           + F+  L R ++   + F  L++G CK   +K A  +   + +AG  PNVVTY  LI GL
Sbjct: 831 L-FHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGL 889

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C +G +D          L   +   GL P+++TYN ++N  CK G +     + G    +
Sbjct: 890 CKEGDLDSANE------LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA 943

Query: 389 CFTPDAVTFTSLI 401
               D VT+T+L+
Sbjct: 944 GLNADTVTYTTLM 956



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 150/331 (45%), Gaps = 26/331 (7%)

Query: 73   ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
            A   F Y ++ R   P V ++  +     +         LF  +   GL PD  T+  L+
Sbjct: 792  AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELM 851

Query: 133  NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
            N +CK G +   F V   ++++  +P+ VT+T+LI  LC E  +  A  L  ++   G +
Sbjct: 852  NGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 911

Query: 193  LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-CEPDAITYSTIIDGLCKEAG 251
             ++FTYN+++NGLC++G+   A+ L        GEF       D +TY+T++D  CK +G
Sbjct: 912  PNIFTYNSIVNGLCKSGNIEEAVKLV-------GEFEAAGLNADTVTYTTLMDAYCK-SG 963

Query: 252  SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
              +        +   L +M        +Q   + F  L++G C    L+   +L   +  
Sbjct: 964  EMD-------KAQEILTEMLGK----GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLA 1012

Query: 312  AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
             G+ PN  T+N L++  C    +      +    ++K + S G+ PD  TY  L+   C 
Sbjct: 1013 KGIAPNATTFNCLVKQYCIRNNL------KAATAIYKDMCSRGVEPDGKTYENLVKGHCN 1066

Query: 372  IGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
               +   + +F  +    F+    T++ LIK
Sbjct: 1067 ARNMKEAWFLFQEMKGKGFSVSVSTYSVLIK 1097



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 6/100 (6%)

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +F+  P  G+  NV +YNI+I  +C  G+++E  H     LL   L   G  PD+ +Y+ 
Sbjct: 656 VFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHH----LLLLMELK--GYTPDVISYST 709

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +IN +C+ G +   + +  ++      P++ T+ S+I +L
Sbjct: 710 VINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLL 749



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 59/135 (43%)

Query: 87   RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            +P + +FN+L          +    L   +   G+ P+  T+N L+  +C    +     
Sbjct: 981  QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATA 1040

Query: 147  VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            +   +      PD  T+ +L+K  C    + EA  LF +++  G  + V TY+ LI G  
Sbjct: 1041 IYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFF 1100

Query: 207  RTGHTIVALNLFEEM 221
            +    + A  +F++M
Sbjct: 1101 KRKKFVEAREIFDQM 1115



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 44/107 (41%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P  T+FN L        +     +++K +   G+ PD  TY  L+   C    +   + +
Sbjct: 1017 PNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFL 1076

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
               +    F+    T++ LIK      + +EA  +F ++R  G   D
Sbjct: 1077 FQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAAD 1123


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 161/375 (42%), Gaps = 67/375 (17%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           NMRP+   +T+   L G L K   +   + L+ RL   G   +  T N LI+  CK G +
Sbjct: 451 NMRPNDGLLTT---LVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNM 507

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                +L ++L   F  D +T+ +LI   C E ++ E   L  ++   G E D FTYN L
Sbjct: 508 QEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLL 567

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLG 257
           I+G+CR G    A+NL+ E  + +        P+  TY  +IDG CK    E G   F  
Sbjct: 568 IHGMCRIGKLDEAVNLWNECKSRD------LVPNVYTYGVMIDGYCKADKIEEGEKLFT- 620

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLN----------------------FLCLIDGLCK 295
              +     LN +  Y  L+R  C   N                      +  LI G+C 
Sbjct: 621 -ELLTQNLELNSVV-YNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCN 678

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD-------ETKHYE------- 341
           I +++ A+ L   + + GL+PNVV Y  LI G C  GQMD       E   Y+       
Sbjct: 679 IGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKIT 738

Query: 342 ---------------TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
                          T   L   +   G+ PD  TYN+L N FCK G++  GF I   + 
Sbjct: 739 YTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMS 798

Query: 387 PSCFTPDAVTFTSLI 401
                 D +T+T+L+
Sbjct: 799 QEGLPLDEITYTTLV 813



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 141/333 (42%), Gaps = 31/333 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A C+ + ML+   S  P  +F  +   L     +++ L   + + L  + P+      L
Sbjct: 404 QAECILEEMLSRGFSINP-GAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTL 462

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   CK G+ S    +  R+L   F  + VT  +LI  LC    + EA  L  K+   G 
Sbjct: 463 VGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGF 522

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            LD  TYNTLI+G C+ G       L  EM           EPD  TY+ +I G+C+   
Sbjct: 523 VLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQG------IEPDTFTYNLLIHGMCR--- 573

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
                          L++    +   + + L  N   +  +IDG CK  K++   +LF  
Sbjct: 574 ------------IGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTE 621

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L    L  N V YN LIR  C +G   E       F L   + S G+ P   TY+ LI+ 
Sbjct: 622 LLTQNLELNSVVYNTLIRAYCRNGNTVE------AFKLHDDMRSKGIPPTTATYSSLIHG 675

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            C IGR+     +   +      P+ V +T+LI
Sbjct: 676 MCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALI 708



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 141/310 (45%), Gaps = 24/310 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++++L   L K + ++   S+ K     G  P+   YN LI+ +CKMG +     + G +
Sbjct: 318 TYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM 377

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +     P++VT  S+I+  C   ++ +A  +  ++   G  ++   + T+I+ LC     
Sbjct: 378 VSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRF 437

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             AL    EM   N        P+    +T++ GLCKE   ++ +       F  L K  
Sbjct: 438 ESALRFLREMLLRN------MRPNDGLLTTLVGGLCKEGKHSDAVEL----WFRLLEK-G 486

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F   LV           LI GLCK   ++ A  L + +   G + + +TYN LI G C +
Sbjct: 487 FGANLVTTN-------ALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKE 539

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G+++E       F L   +   G+ PD +TYN+LI+  C+IG++     ++         
Sbjct: 540 GKVEEG------FKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLV 593

Query: 392 PDAVTFTSLI 401
           P+  T+  +I
Sbjct: 594 PNVYTYGVMI 603



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 143/340 (42%), Gaps = 41/340 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  F+       K    +  + LF  +   G+ P+  TYN LI+  CK G +   F  
Sbjct: 244 PDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRF 303

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++++       +T++ LI  L    +  EA ++  +    G   +   YNTLI+G C+
Sbjct: 304 KEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCK 363

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
            G+   AL +  +M +          P+++T ++II G CK  +   A  +    ++   
Sbjct: 364 MGNLGDALRIRGDMVSKG------INPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGF 417

Query: 266 ALNKMAFYFPLVRVQCLCLN------------------------FLCLIDGLCKISKLKI 301
           ++N  AF      +  LC+N                           L+ GLCK  K   
Sbjct: 418 SINPGAF---TTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSD 474

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A EL+  L   G   N+VT N LI GLC  G M E         L K++   G   D  T
Sbjct: 475 AVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQE------AVRLLKKMLERGFVLDKIT 528

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           YN LI+  CK G+V  GF + G ++     PD  T+  LI
Sbjct: 529 YNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 568



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 132/301 (43%), Gaps = 35/301 (11%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++N L     K    +    L   +   G+ PD +TYN+LI+  C++G++     +    
Sbjct: 528 TYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNEC 587

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 P+  T+  +I   C   +I E   LFT+L     EL+   YNTLI   CR G+T
Sbjct: 588 KSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNT 647

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----------------KEAGSANF 255
           + A  L ++M +          P   TYS++I G+C                KE    N 
Sbjct: 648 VEAFKLHDDMRSKG------IPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNV 701

Query: 256 LGFSCM-ASFSALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           + ++ +   +  L +M     +++      +    + +  +IDG  K   +K A +L   
Sbjct: 702 VCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHE 761

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G++P+ VTYN+L  G C +G+++E       F +   ++  GL  D  TY  L++ 
Sbjct: 762 MVGKGIVPDTVTYNVLTNGFCKEGKIEEG------FKICDYMSQEGLPLDEITYTTLVHG 815

Query: 369 F 369
           +
Sbjct: 816 W 816



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 25/254 (9%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P   T T L+  L   + + ++  +F  +R  G   DV+ ++T IN  C+ G    A+ L
Sbjct: 210 PTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQL 268

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
           F +M     + GV   P+ +TY+ +I GLCK         F        +N         
Sbjct: 269 FFDME----KLGV--SPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVN--------- 313

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                 + +  LI+GL K+ K   A  + +     G  PN V YN LI G C  G + + 
Sbjct: 314 ---ATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGD- 369

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   +   + S G+ P+  T N +I  FCKIG++     I   +L   F+ +   F
Sbjct: 370 -----ALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAF 424

Query: 398 TSLIKILEINSFFR 411
           T++I  L +NS F 
Sbjct: 425 TTIIHWLCMNSRFE 438



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 98/240 (40%), Gaps = 18/240 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++ ++     K    +    LF  L    L  +   YN LI  +C+ G     F +
Sbjct: 594 PNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKL 653

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      P   T++SLI  +C   R+ +A  L  ++R  G   +V  Y  LI G C+
Sbjct: 654 HDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCK 713

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G     +N+ +EM++ +        P+ ITY+ +IDG            +S        
Sbjct: 714 LGQMDKVVNVLQEMSSYD------IHPNKITYTVMIDG------------YSKSGDMKTA 755

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K+        +    + +  L +G CK  K++   ++   + + GL  + +TY  L+ G
Sbjct: 756 AKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHG 815



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 1/133 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A C+ D M       P V  +  L G   K    D V+++ + ++   + P++ TY ++
Sbjct: 684 DAKCLIDEM-RKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVM 742

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ + K G +     +L  ++     PD VT+  L    C E +I E   +   +   G 
Sbjct: 743 IDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGL 802

Query: 192 ELDVFTYNTLING 204
            LD  TY TL++G
Sbjct: 803 PLDEITYTTLVHG 815


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 177/388 (45%), Gaps = 57/388 (14%)

Query: 56  RCKSSGEG--DITSITPNEALC-----VFDYMLNMRPS---RPPVTSFNILFGCLAKTKH 105
           RCK S +    + ++  NE L       +DY++N   +    P   SFN++   L K + 
Sbjct: 143 RCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRF 202

Query: 106 YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
            D  + +F+ +      PD YTY  L++  CK  R+    ++L  +     +P  V +  
Sbjct: 203 VDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNV 262

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
           LI  LC +  +     L   + + GC  +  TYNTLI+GLC  G    A++L E M +  
Sbjct: 263 LIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK 322

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN 285
                 C P+ +TY T+I+GL K+  + + +        S++ +  ++      Q +   
Sbjct: 323 ------CIPNDVTYGTLINGLVKQRRATDAVRL-----LSSMEERGYHLN----QHI--- 364

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY----- 340
           +  LI GL K  K + A  L++ +   G  PN+V Y++L+ GLC +G+ +E K       
Sbjct: 365 YSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMI 424

Query: 341 ------------------------ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
                                   E    ++K ++ TG   + + Y++LI+  C +GRV 
Sbjct: 425 ASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVK 484

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              +++ ++L     PD V ++S+IK L
Sbjct: 485 EAMMVWSKMLTIGIKPDTVAYSSIIKGL 512



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 166/363 (45%), Gaps = 37/363 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + D M +   S  PV  +N+L   L K      V  L   + L G  P+  TYN 
Sbjct: 239 DEAVLLLDEMQSEGCSPSPVI-YNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNT 297

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C  G++     +L R++ S   P+ VT+ +LI  L  + R  +A  L + +   G
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             L+   Y+ LI+GL + G    A++L+ +MA         C+P+ + YS ++DGLC+E 
Sbjct: 358 YHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKG------CKPNIVVYSVLVDGLCRE- 410

Query: 251 GSAN--------FLGFSCMA---SFSALNKMAF-----------YFPLVRVQCLCLNFLC 288
           G  N         +   C+    ++S+L K  F           +  + +  C   N  C
Sbjct: 411 GKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGC-SRNKFC 469

Query: 289 ---LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
              LIDGLC + ++K A  ++  +   G+ P+ V Y+ +I+GLC  G MD         L
Sbjct: 470 YSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEML 529

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
             +   S    PD+ TYNIL++  C    +S    +   +L     PD +T  + +  L 
Sbjct: 530 CQEEPKSQ---PDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLS 586

Query: 406 INS 408
             S
Sbjct: 587 EKS 589



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 135/302 (44%), Gaps = 30/302 (9%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +++L   L K    +  +SL++++   G  P+   Y++L++  C+ G+ +    +L R++
Sbjct: 365 YSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMI 424

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   P+A T++SL+K         EA  ++ ++   GC  + F Y+ LI+GLC  G   
Sbjct: 425 ASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVK 484

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A+ ++ +M        +  +PD + YS+II GLC         G   M +   L     
Sbjct: 485 EAMMVWSKM------LTIGIKPDTVAYSSIIKGLC---------GIGSMDAALKLYHEML 529

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                + Q   + +  L+DGLC    +  A +L  S+   G  P+V+T N  +  L    
Sbjct: 530 CQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKS 589

Query: 333 QM-DETKHY--ETVFLLFKRLNSTG------------LFPDLYTYNILINCFCKIGRVSS 377
              D+ + +  E V  L KR   +G            L P   T+ +++   CK  ++++
Sbjct: 590 NSCDKGRSFLEELVVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVREICKPKKINA 649

Query: 378 GF 379
             
Sbjct: 650 AI 651



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 27/228 (11%)

Query: 178 EAAALFTKL-RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
           +A  LF ++   F C+  V ++N+++N +   G     L  ++ + N N    +   P+ 
Sbjct: 130 KAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNI--SPNG 187

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLC 294
           ++++ +I  LCK       L F   A       +  +  +   +CL     +  L+DGLC
Sbjct: 188 LSFNLVIKALCK-------LRFVDRA-------IEVFRGMPERKCLPDGYTYCTLMDGLC 233

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE-TKHYETVFLLFKRLNST 353
           K  ++  A  L   +   G  P+ V YN+LI GLC  G +   TK  + +FL        
Sbjct: 234 KEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFL-------K 286

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G  P+  TYN LI+  C  G++     +  R++ S   P+ VT+ +LI
Sbjct: 287 GCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLI 334


>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
          Length = 461

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 164/336 (48%), Gaps = 28/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYT 127
            +A  VFD +L  R     +   N     +A+      V S + R+   G   + P+ YT
Sbjct: 29  EDARHVFDELLR-RGKGATIYGLNRALDDVARHSPAAAV-SRYNRMARAGADEVTPNLYT 86

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKL 186
           Y++LI C C+ GR+  GF  LG +++  F  +A+TFT L+K LCA+ R  +A  +   ++
Sbjct: 87  YSVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLCRM 146

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              GC  +VF+   L+ GLC    +  AL L + M +  G+    C PD + Y+T+I+G 
Sbjct: 147 TQLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVLYNTVINGF 202

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            KE             +++  ++M     L  V    + +  +I  LCK   +  A E+ 
Sbjct: 203 FKEGDPDK--------AYATYHEMFDQGILPDV----VTYSSIIAALCKAQAMDKAMEVL 250

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            ++ + G+MPN  TYN ++ G C+ GQ+ E   +       K + S G+ PD+ T N+L+
Sbjct: 251 NTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGF------LKMMCSDGVEPDVVTCNLLM 304

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  CK  R +    IF  +      PD  T+ +L++
Sbjct: 305 DYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQ 340



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 122/296 (41%), Gaps = 29/296 (9%)

Query: 80  MLNMRPSR-----PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           +L M P       P V  +N +     K    D   + +  +   G+ PD  TY+ +I  
Sbjct: 177 LLQMMPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAA 236

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            CK   +     VL  ++++   P+  T+ S++   C+  ++ EA      +   G E D
Sbjct: 237 LCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPD 296

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           V T N L++ LC+      A  +F  M     + G+  +PD  TY T++ G   +     
Sbjct: 297 VVTCNLLMDYLCKNRRCTEARKIFNSMT----KCGL--KPDITTYCTLLQGYATKGALVE 350

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                 +  ++ +      F +            LI    K  K+  A  +F  + + GL
Sbjct: 351 MHDLLDLMVWNGIQPNHHVFNI------------LICAYAKQEKVDEAMLVFSKMRQQGL 398

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            PN V Y  +I  LC  G++     Y+ V  L + +N  GL PD+  Y  LI+ FC
Sbjct: 399 SPNAVNYRTVIDVLCKLGRV-----YDAVLTLKQMINE-GLTPDIIVYTPLIHGFC 448



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 117/271 (43%), Gaps = 30/271 (11%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGD     P++A   +  M + +   P V +++ +   L K +  D  + +   +   G+
Sbjct: 205 EGD-----PDKAYATYHEMFD-QGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGV 258

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+  TYN +++ +C  G+++     L  +      PD VT   L+  LC   R  EA  
Sbjct: 259 MPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARK 318

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +F  +   G + D+ TY TL+ G    G  +   +L + M   NG      +P+   ++ 
Sbjct: 319 IFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMV-WNG-----IQPNHHVFNI 372

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISK 298
           +I    K+                 +++    F  +R Q L    +N+  +ID LCK+ +
Sbjct: 373 LICAYAKQ---------------EKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGR 417

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           +  A    + +   GL P+++ Y  LI G C
Sbjct: 418 VYDAVLTLKQMINEGLTPDIIVYTPLIHGFC 448



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 23/229 (10%)

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           +A  +F +L   G    ++  N  ++ + R      A++ +  MA    +      P+  
Sbjct: 30  DARHVFDELLRRGKGATIYGLNRALDDVARHSPA-AAVSRYNRMARAGAD---EVTPNLY 85

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           TYS +I G C  AG  + LGF   A+   + K  F     RV+ +   F  L+ GLC   
Sbjct: 86  TYSVLI-GCCCRAGRLD-LGF---AALGNVIKKGF-----RVEAI--TFTPLLKGLCADK 133

Query: 298 KLKIARELFQ-SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG-L 355
           +   A ++    + + G +PNV +  IL++GLC     DE +  E + LL    +  G  
Sbjct: 134 RTSDAMDIVLCRMTQLGCIPNVFSCTILLKGLC-----DENRSQEALELLQMMPDDGGDC 188

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            PD+  YN +IN F K G     +  +  +      PD VT++S+I  L
Sbjct: 189 PPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAAL 237


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 154/311 (49%), Gaps = 24/311 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FN+L G L  +   D    LF ++   G  P+ Y++ IL+  +C+ G  S G  +
Sbjct: 54  PETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLEL 113

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG + R  F+P+ V + +LI   C E +  +A  L  ++R  G   DV T+N  I+ LC 
Sbjct: 114 LGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCS 173

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFS 265
           +G  + A  +F +M     E   + +P+ ITY+ ++ G CKE     A  L      S +
Sbjct: 174 SGKVLEASRIFRDMQ--IDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSEN 231

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            +N+ ++   L+              GL +I KL  A+ + + +   G+ PNV +YNI++
Sbjct: 232 LMNRESYNIWLL--------------GLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVM 277

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC +G + + +      +L + + S+G+ PD  TY  L++ +C  G+VS    +   +
Sbjct: 278 DGLCKNGVLFDAR------MLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREM 331

Query: 386 LPSCFTPDAVT 396
           +    +P+  T
Sbjct: 332 MRDGCSPNNYT 342



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 153/348 (43%), Gaps = 36/348 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  V   M++M    P V S+NI+   L K         L + +  +G+ PD  TY  L
Sbjct: 253 EAQLVLKEMVDM-GMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTL 311

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ +C  G+VS    VL  ++R   +P+  T   L+  L  E RI EA  L  K+   G 
Sbjct: 312 LHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGY 371

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMAN---------GNGEFGVV--------CEP 234
            +D  T N +I+GLC  G    A+ +   M           GN   G+V        C P
Sbjct: 372 VIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMP 431

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           D I+YSTII GLCK    A  +G +       + K         +Q     +   I   C
Sbjct: 432 DLISYSTIISGLCK----AGRVGEAKKKFIEMMGK--------NLQPDSAIYDVFIHSFC 479

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K  K+  A  + + + + G    + TYN LI GL +  Q+ E      ++ L   +   G
Sbjct: 480 KEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFE------IYGLIDEMRERG 533

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + PD+  YN +++  C+ GRV     +   +L    +P+  +F+ LIK
Sbjct: 534 VSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIK 581



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 116/284 (40%), Gaps = 37/284 (13%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D A  + F+   CK   EG I+S     A  V   M     ++   T  +++ G  +K +
Sbjct: 467 DSAIYDVFIHSFCK---EGKISS-----AFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQ 518

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
            ++ +  L   +   G+ PD   YN +++  C+ GRV     VL  +L+   +P+  +F+
Sbjct: 519 IFE-IYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFS 577

Query: 165 SLIKDLCAESRIMEAAALFT-KLRVFGCELDVF--TYNTLINGLCRTGHTIVALNLFEEM 221
            LIK  C          +F   L V G +  ++  T+N L+ G    G  + A  LFE  
Sbjct: 578 ILIKAFCKACDFSAVDEIFEIALNVCGHKEALYSLTFNELLVG----GEVVKAKELFETA 633

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
            + + + G         Y  +ID LCK+    +  G         L    ++F       
Sbjct: 634 LDRSFDVG------NFLYKDLIDHLCKDEKLDDASGI-----LHKLIDKGYWFDPA---- 678

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQ---SLPRAGLMPNVVTYN 322
              +F+ +IDGL K      A EL +    +   G + N V  N
Sbjct: 679 ---SFMPVIDGLGKRGNKHEADELAEKMMEMASEGKVKNKVHQN 719


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 164/359 (45%), Gaps = 39/359 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNI 130
           +AL  FD  L +  ++P V S+  L   L K    D    LF+++    G  P+ +TYN 
Sbjct: 78  QALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNA 137

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK  R+     V+    +  F PD VT+ +L+  L    R+ EA A FT++   G
Sbjct: 138 LVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEG 197

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
               + ++N +I GLCR      AL +F EM + +        P+ +TYS +IDGLCK  
Sbjct: 198 YVPTLVSFNAIITGLCRARRLADALEVFNEMIDRD------FHPNLVTYSVVIDGLCKSD 251

Query: 249 --------------EAGSANFLGFSCMA-SFSALNKMAFYFPLVR--VQCLCL----NFL 287
                         E    + + ++ +   FSA  ++     L+R  V   C+     + 
Sbjct: 252 QLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYT 311

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            +ID LCK+ ++  A E+F+ L      PNVVTY+ LI G C   ++DE           
Sbjct: 312 VVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGG--------- 362

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406
           K +      P++ TYN +I     + R    + +F  +    F PDA T+  L + L +
Sbjct: 363 KVMREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRALRM 421



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 171/370 (46%), Gaps = 55/370 (14%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTS--FNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           + + + N+AL +F       P + P +S  +N+L          D   SL + +++ G+ 
Sbjct: 2   VRAGSHNQALQLF----RENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQ 57

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILR-SCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            +  T +I++   C+ GRV+         L  +   PD V++T+LI  LC   R+  A  
Sbjct: 58  CNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFD 117

Query: 182 LFTKL-RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
           LF K+    GC  + FTYN L++GLC+      A  +  E    +        PD +TY+
Sbjct: 118 LFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRD------FAPDVVTYN 171

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           T++  L  + G  +      +A+F+ + +  +   LV       +F  +I GLC+  +L 
Sbjct: 172 TLMAALF-QLGRVD----EALATFTQMTEEGYVPTLV-------SFNAIITGLCRARRLA 219

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH--------------------- 339
            A E+F  +      PN+VTY+++I GLC   Q+DE +                      
Sbjct: 220 DALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLV 279

Query: 340 --------YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
                    ++   L +R+ S G  PD+ TY ++I+  CK+GRV     IF  ++ +  +
Sbjct: 280 LGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCS 339

Query: 392 PDAVTFTSLI 401
           P+ VT+++LI
Sbjct: 340 PNVVTYSALI 349



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 108/262 (41%), Gaps = 30/262 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL  F  M       P + SFN +   L + +     L +F  +      P+  TY++
Sbjct: 184 DEALATFTQMTE-EGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSV 242

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK  ++     +L R++     PD V +T L+    A  R+  A  L  ++   G
Sbjct: 243 VIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQG 302

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
           C  DV TY  +I+ LC+ G    A  +F E+          C P+ +TYS +I G C+  
Sbjct: 303 CIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANK------CSPNVVTYSALIGGYCRAS 356

Query: 249 --EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
             + G       +C  +    N M +                   GL  + + + A  +F
Sbjct: 357 RVDEGGKVMREMACRPNVVTYNTMIW-------------------GLSMVDRNEEAYGMF 397

Query: 307 QSLPRAGLMPNVVTYNILIRGL 328
           + +   G +P+  TY  L R L
Sbjct: 398 REMSECGFVPDARTYRGLKRAL 419


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/392 (28%), Positives = 165/392 (42%), Gaps = 79/392 (20%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M  M  S P V ++N L     K    + V  L   +  +G   D  TYN L
Sbjct: 217 EARALFVRMKAMGCS-PDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNAL 275

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           INCF K G +   +   G + R     + VT ++ +   C E  + EA  LF ++RV G 
Sbjct: 276 INCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGM 335

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             + FTY +L++G C+ G    A+ L +EM +     G+V  P+ +TY+ ++DGLCKE  
Sbjct: 336 MPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQ----GLV--PNVVTYTVMVDGLCKEGK 389

Query: 252 SA---------------------------NFLGFSCMASFSALNKMAFYFPLVRVQCLCL 284
            A                           +F+  +   +   LN+M      + V     
Sbjct: 390 VAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSL--- 446

Query: 285 NFLCLIDGLCKISKLKIARELFQSL----------------------------------- 309
            +  LI GLCK+ KL  A+ L   +                                   
Sbjct: 447 -YGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKI 505

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
           P +GL PNVVTY  LI GLC  G + E   +      F ++   GL P++  Y  LI+ F
Sbjct: 506 PDSGLQPNVVTYCALIDGLCKAGSIYEAISH------FDKMRELGLDPNVQVYTTLIDGF 559

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CKIG +S    +   ++    + D V +TSLI
Sbjct: 560 CKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLI 591



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 140/345 (40%), Gaps = 58/345 (16%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           + LF ++ + G+ P+ +TY  L++  CK GR+    V+L  ++     P+ VT+T ++  
Sbjct: 324 MKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDG 383

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
           LC E ++  A  + + +   G + +   Y TLI+G     ++  AL+L  EM N   E  
Sbjct: 384 LCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMEL- 442

Query: 230 VVCEPDAITYSTIIDGLCK-----EAGSANFLGFSC------------MASFSALNKMAF 272
                D   Y T+I GLCK     EA S       C            M +F    K + 
Sbjct: 443 -----DVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESE 497

Query: 273 YFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
              L+       +Q   + +  LIDGLCK   +  A   F  +   GL PNV  Y  LI 
Sbjct: 498 AVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLID 557

Query: 327 GLCNDGQMDETKHY-----------------------------ETVFLLFKRLNSTGLFP 357
           G C  G + +  H                              +  F L  ++  TGL  
Sbjct: 558 GFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQL 617

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           DLY Y   I+ FC +  +     +   ++ +  TPD   +  LI+
Sbjct: 618 DLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIR 662



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 39/340 (11%)

Query: 70  PNEALCVFDYM----LNMRPSRPPVTS-FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           P+ A  + D +    L + P R  + S F+ L   LA     D  +    R+    + P+
Sbjct: 108 PHLAASLVDILHRAALALGPHRSALPSVFDTLLSLLADHGLLDDAVRALARVRQLRVPPN 167

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
             T N   +   ++ R   G +V  R+      P+  TF  +I  LC +  ++EA ALF 
Sbjct: 168 TRTCN---HILLRLARNRQGGLVR-RLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFV 223

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           +++  GC  DV TYN+LI+G  + G       L  EM          C  D +TY+ +I+
Sbjct: 224 RMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSG------CAADVVTYNALIN 277

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCL---IDGLCKISKLKI 301
                          C + F  + K   YF  ++   +  N + L   +D  CK   ++ 
Sbjct: 278 ---------------CFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVRE 322

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A +LF  +   G+MPN  TY  L+ G C  G++D+        +L   +   GL P++ T
Sbjct: 323 AMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDA------IVLLDEMVHQGLVPNVVT 376

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           Y ++++  CK G+V+    +   +  +    + + +T+LI
Sbjct: 377 YTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLI 416



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 114/248 (45%), Gaps = 18/248 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+ +  L   L K +  D   SL  +++  GL P+   Y  +++ F K G+ S    +L 
Sbjct: 444 VSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLH 503

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           +I  S   P+ VT+ +LI  LC    I EA + F K+R  G + +V  Y TLI+G C+ G
Sbjct: 504 KIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIG 563

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A++L  EM +           D + Y+++IDG  K+             +F+   K
Sbjct: 564 SLSKAVHLMNEMVDKGMSL------DKVVYTSLIDGHMKQG--------DLQGAFALKAK 609

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           M      + + C    + C I G C ++ ++ AR +   +   G+ P+   YN LIR   
Sbjct: 610 MIETGLQLDLYC----YTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQ 665

Query: 330 NDGQMDET 337
             G M+E 
Sbjct: 666 KLGNMEEA 673



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 127/299 (42%), Gaps = 33/299 (11%)

Query: 104 KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTF 163
           K+ +  L L   +   G+  D   Y  LI   CK+ ++     +L ++      P+ V +
Sbjct: 423 KNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIY 482

Query: 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           T+++       +  EA AL  K+   G + +V TY  LI+GLC+ G    A++ F++M  
Sbjct: 483 TTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMR- 541

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
              E G+  +P+   Y+T+IDG CK                 +L+K       +  + + 
Sbjct: 542 ---ELGL--DPNVQVYTTLIDGFCK---------------IGSLSKAVHLMNEMVDKGMS 581

Query: 284 LN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
           L+   +  LIDG  K   L+ A  L   +   GL  ++  Y   I G CN   M E +  
Sbjct: 582 LDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARG- 640

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI---FGRILPSCFTPDAVT 396
                +   +  TG+ PD   YN LI  + K+G +     +      +L SC   D  +
Sbjct: 641 -----VLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEMESVLSSCTEEDTAS 694



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 6/157 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++  L   L K       +S F ++   GL P+   Y  LI+ FCK+G +S    
Sbjct: 511 QPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVH 570

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  ++    + D V +TSLI     +  +  A AL  K+   G +LD++ Y   I+G C
Sbjct: 571 LMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFC 630

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
                  A  +  EM       G    PD   Y+ +I
Sbjct: 631 NMNMMQEARGVLSEM------IGTGITPDKTAYNCLI 661



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 6/161 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP    +  +     K       ++L  ++  +GL P+  TY  LI+  CK G +     
Sbjct: 476 RPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAIS 535

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              ++      P+   +T+LI   C    + +A  L  ++   G  LD   Y +LI+G  
Sbjct: 536 HFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHM 595

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
           + G    A  L  +M     +  + C      Y+  I G C
Sbjct: 596 KQGDLQGAFALKAKMIETGLQLDLYC------YTCFISGFC 630


>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
 gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
          Length = 447

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 168/358 (46%), Gaps = 41/358 (11%)

Query: 51  QFLKERCKSSGEGDITS-------ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKT 103
           +F KE   S  E D+ S       ++ +  +     + +     P + ++N+L     K 
Sbjct: 113 EFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKI 172

Query: 104 KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTF 163
                  SL K +   G  P+ +TY+I+INC+CK+ +V   + V  +++ S   P+AVTF
Sbjct: 173 GQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTF 232

Query: 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT-GHTIVALNLFEEMA 222
            +LI   C    + +A  LF ++   GC+  + TYNTLI+ LC+  G    A++LF ++ 
Sbjct: 233 NTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLE 292

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
                 G    P  +TY+++I G  + A     L   C              P V     
Sbjct: 293 ------GAGLTPTIVTYNSLIQGFSERANDG--LRLLCHMHAEGCK------PDV----- 333

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
            + + CLI GLC  ++++ A+ LF  +  A   PNV T+N LIRGLC   +++E ++   
Sbjct: 334 -ITYNCLISGLCSANRVEDAQRLFNGMACA---PNVTTFNFLIRGLCAQKKVEEARN--- 386

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
              +  R+ +    PD+ T+N +I  FCK G +     +   +L   F P+  T  +L
Sbjct: 387 ---ILDRMTA----PDMTTFNTIILAFCKAGAMHDAREVMKDMLKHGFYPNTYTTYAL 437



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 146/334 (43%), Gaps = 62/334 (18%)

Query: 103 TKHYDTVLSLFKRLNLTGLF-PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
            + +D  L LFK + L GLF P+ +TYN+LI  FCK G++     V   +  S   P+A 
Sbjct: 3   ARKHDQALRLFKEV-LAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNAS 61

Query: 162 TFTSLIKDLCAESRIMEAAAL--------------------------------FTKLRVF 189
           T  +L+  LC   ++  A  L                                F +++  
Sbjct: 62  TMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRAIEFFKEMKAS 121

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G E D+ +Y+ L++ L  +G    A  LF  M          C PD +TY+ ++DG CK 
Sbjct: 122 GVEPDLESYHILLSALSDSGRMAEAHALFSAM---------TCSPDIMTYNVLMDGYCKI 172

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
             +     +   +    + K A Y P V        +  +I+  CK+ K++ A E+F  +
Sbjct: 173 GQT-----YEAQSLMKEILK-AGYEPNV------FTYSIIINCYCKLDKVEEAWEVFMKM 220

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             +  +PN VT+N LI G C  G +      E    LF  +   G    + TYN LI+  
Sbjct: 221 IESNCVPNAVTFNTLIAGFCKAGML------EDAIKLFAEMEKIGCKATIVTYNTLIDSL 274

Query: 370 CKI-GRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           CK  G V +   +F ++  +  TP  VT+ SLI+
Sbjct: 275 CKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQ 308


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 166/372 (44%), Gaps = 55/372 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYT 127
            +A  VFD +L  R     +   N     +A+      V S + R+   G   + P  +T
Sbjct: 32  EDARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHT 89

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKL 186
           Y ILI C C+  R+  GF  LG +++  F  +A+TFT L+K LCA+ R  +A  +   ++
Sbjct: 90  YAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
               C  DVF+   L+ GLC    +  AL L   MA+G G       PD ++Y+T+I+G 
Sbjct: 150 TELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSA---PDVVSYTTVINGF 206

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            KE  S          ++S  ++M       R+    + +  +I  LCK   +  A E+ 
Sbjct: 207 FKEGDSGK--------AYSTYHEMLDR----RISPDVVTYSSIIAALCKGQAMDKAMEVL 254

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDET----------------------------K 338
            S+ + G+MPN  TY  ++ G C+ GQ  E                             +
Sbjct: 255 TSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQ 314

Query: 339 HYET------VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
            Y T      +  L   +   G+ PD Y YNILI  + K G+V    ++F ++      P
Sbjct: 315 GYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNP 374

Query: 393 DAVTFTSLIKIL 404
           DAVT+ ++I IL
Sbjct: 375 DAVTYGAVIGIL 386



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 148/318 (46%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P    +NIL    AK    D  + +F ++   GL PD  TY  +I   CK GRV    +
Sbjct: 338 HPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAML 397

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              +++    +P  + + SLI  LC  ++   A  L  ++   G  L+   +N++I+  C
Sbjct: 398 YFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHC 457

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G  I +  LF+ M       GV  +PD ITYST+IDG C  AG  +      M   S 
Sbjct: 458 KEGRVIESEKLFDLMV----RIGV--KPDIITYSTLIDGYCL-AGKMD----EAMKLLSG 506

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +  +      V        +  LI+G CKIS++  A  LF+ +  +G+ P+++TYNI+++
Sbjct: 507 MVSVGLKPNTV-------TYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQ 559

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL       +T+       L+ R+  +G   +L TYNI+++  CK         +F  + 
Sbjct: 560 GLF------QTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLC 613

Query: 387 PSCFTPDAVTFTSLIKIL 404
                 +A TF  +I  L
Sbjct: 614 LMDLKLEARTFNIMIDAL 631



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 143/320 (44%), Gaps = 28/320 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P + ++  L    A       + +L   +   G+ PD Y YNILI  + K G+V    +
Sbjct: 303 EPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAML 362

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V  ++ +    PDAVT+ ++I  LC   R+ +A   F ++   G       YN+LI+GLC
Sbjct: 363 VFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC 422

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A  L  EM +       +C  + I +++IID  CKE                 
Sbjct: 423 TCNKWERAEELILEMLDRG-----IC-LNTIFFNSIIDSHCKEG--------------RV 462

Query: 267 LNKMAFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           +     +  +VR  V+   + +  LIDG C   K+  A +L   +   GL PN VTY  L
Sbjct: 463 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTL 522

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I G C   +M +        +LFK + S+G+ PD+ TYNI++    +  R ++   ++ R
Sbjct: 523 INGYCKISRMGDA------LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVR 576

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           I  S    +  T+  ++  L
Sbjct: 577 ITESGTQIELSTYNIILHGL 596



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 137/291 (47%), Gaps = 36/291 (12%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           GL PD  TY  L+  +   G +     +L  ++R+   PD   +  LI     + ++ EA
Sbjct: 301 GLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEA 360

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             +F+K+R  G   D  TY  +I  LC++G    A+  FE+M +          P  I Y
Sbjct: 361 MLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEG------LSPGNIVY 414

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV---QCLCLN---FLCLIDGL 293
           +++I GLC           +C       NK      L+     + +CLN   F  +ID  
Sbjct: 415 NSLIHGLC-----------TC-------NKWERAEELILEMLDRGICLNTIFFNSIIDSH 456

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK  ++  + +LF  + R G+ P+++TY+ LI G C  G+MDE         L   + S 
Sbjct: 457 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEA------MKLLSGMVSV 510

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           GL P+  TY  LIN +CKI R+    V+F  +  S  +PD +T+  +++ L
Sbjct: 511 GLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGL 561



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 116/286 (40%), Gaps = 56/286 (19%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  PD  +Y  +IN F K G     +     +L    +PD VT++S+I  LC    + +A
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAIT 238
             + T +   G   +  TY ++++G C +G    A+   +++ ++G    G+  EPD  T
Sbjct: 251 MEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGL--EPDIAT 308

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y T++ G                A+  AL  M                            
Sbjct: 309 YCTLLQGY---------------ATKGALVGM---------------------------- 325

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
                 L   + R G+ P+   YNILI      G++DE        L+F ++   GL PD
Sbjct: 326 ----HALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEA------MLVFSKMRQQGLNPD 375

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             TY  +I   CK GRV    + F +++    +P  + + SLI  L
Sbjct: 376 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGL 421



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 132/333 (39%), Gaps = 60/333 (18%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           E+  +FD M+ +   +P + +++ L          D  + L   +   GL P+  TY  L
Sbjct: 464 ESEKLFDLMVRI-GVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTL 522

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN +CK+ R+    V+   +  S  +PD +T+  +++ L    R   A  L+ ++   G 
Sbjct: 523 INGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT 582

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           ++++ TYN +++GLC+   T  AL +F+ +   + +       +A T++ +ID L     
Sbjct: 583 QIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKL------EARTFNIMIDAL----- 631

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                      K+ +   A++LF +   
Sbjct: 632 ------------------------------------------LKVGRNGEAKDLFVAFSS 649

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL+PN  TY ++   +   G ++E         LF  +   G   D    N ++    +
Sbjct: 650 NGLVPNYWTYRLMAENIIGQGLLEELDQ------LFLSMEDNGCTVDSGMLNFIVRELLQ 703

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            G ++        I    F+ +A T +  I +L
Sbjct: 704 RGEITRAGTYLSMIDEKHFSLEASTASLFIDLL 736


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 145/311 (46%), Gaps = 18/311 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     ++    + K +   G  PD  TY  +I   C+  RV   F++   + +    P
Sbjct: 426 CLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNP 485

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T LI   C    I +A + F ++R  GC  +V TY  L++   ++     A ++F
Sbjct: 486 DVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIF 545

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL--GFSCMASFSALNKMAFYFPL 276
             M       G  C P+AITYS +IDGLCK AG        ++ +   S   +  FYF  
Sbjct: 546 HRMV------GDACYPNAITYSALIDGLCK-AGEIQKACEVYAKLIGTSDNIESDFYFEG 598

Query: 277 VRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
                +  N +    L++GLCK  K+  A +L  ++  AG  PN + Y+ L+ G C  G+
Sbjct: 599 KDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGE 658

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           +D  +       +F R+   G  P ++TY  LI+   K GR+     +  ++L     P+
Sbjct: 659 IDSAQE------VFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPN 712

Query: 394 AVTFTSLIKIL 404
            VT+T+++  L
Sbjct: 713 VVTYTAMVDGL 723



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 152/329 (46%), Gaps = 32/329 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  +++  +   L + K  D    LF+ +   G+ PD YTY ILI+ FCK G +      
Sbjct: 450 PDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSW 509

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +  +  +P+ VT+T+L+       ++ +A  +F ++    C  +  TY+ LI+GLC+
Sbjct: 510 FDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCK 569

Query: 208 TGHTIVALNLFEEMANGN----------GEFGVVCEPDAITYSTIIDGLCK--EAGSANF 255
            G    A  ++ ++   +          G+      P+ +TY  +++GLCK  +   A+ 
Sbjct: 570 AGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHD 629

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L  + +A+    N++ +                L+DG CK+ ++  A+E+F  + + G +
Sbjct: 630 LLDAMLAAGCEPNQIVYD--------------ALVDGFCKVGEIDSAQEVFLRMTKCGYL 675

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+V TY  LI  +  DG++D          +  ++      P++ TY  +++  CK G  
Sbjct: 676 PSVHTYTSLIDRMFKDGRLD------LAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGET 729

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                +   +     +P+ VT+T+LI  L
Sbjct: 730 EKALNLLSLMEKKGCSPNVVTYTALIDGL 758



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 138/351 (39%), Gaps = 83/351 (23%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   L K +       L   +   G  P++  Y+ L++ FCK+G +     V
Sbjct: 606 PNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEV 665

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R+ +  + P   T+TSLI  +  + R+  A  + +++    C  +V TY  +++GLC+
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCK 725

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           TG T  ALNL   M          C P+ +TY+ +IDGL K                   
Sbjct: 726 TGETEKALNLLSLMEKKG------CSPNVVTYTALIDGLGKAG----------------- 762

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                         K+    ELF  +   G  PN VTY ILI  
Sbjct: 763 ------------------------------KVDAGLELFMQMKTKGCAPNYVTYRILINH 792

Query: 328 LCNDG----------QMDET------KHYETVFLLFKR--LNSTGLFPDLYT-------- 361
            C  G          +M +T      + Y T    F +  L S GL  ++ +        
Sbjct: 793 CCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHDTAPIAP 852

Query: 362 -YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT---FTSLIKILEINS 408
            Y +LI+ F K GR+ +   +   ++    + +  +    TSLI+ L ++S
Sbjct: 853 VYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSS 903



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 140/357 (39%), Gaps = 65/357 (18%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           DR+++  F +  CK    GD   +   E     D+ L+       V    ++ G L +  
Sbjct: 238 DRSTVGSFAQALCKEGRWGDALDLLERE-----DFKLD------TVLCTQMISG-LMEAS 285

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
            ++  +S   R+      P+  TY  L+  F K  ++     ++  ++     P    F 
Sbjct: 286 LFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFN 345

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           SL+   C       A  LF ++   GC      YN  I  +C            EE+ N 
Sbjct: 346 SLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGR----------EELPN- 394

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL 284
                    P+ +  +        E      L  SC+     LNK              +
Sbjct: 395 ---------PELLDLA--------EKVYEEMLVASCV-----LNK--------------I 418

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
           N       LC + K + A ++ + + R G +P+  TY  +I  LC   ++D+       F
Sbjct: 419 NTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKA------F 472

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LLF+ +   G+ PD+YTY ILI+ FCK G +      F  +  +  +P+ VT+T+L+
Sbjct: 473 LLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALL 529



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 119/353 (33%), Gaps = 69/353 (19%)

Query: 106 YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           +   L    RL   G  P   TYN L+      G+V   F V   +  S F  D  T  S
Sbjct: 185 WGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGS 244

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
             + LC E R  +A  L  +      +LD      +I+GL        A++    M    
Sbjct: 245 FAQALCKEGRWGDALDLLEREDF---KLDTVLCTQMISGLMEASLFNEAMSFLHRMR--- 298

Query: 226 GEFGVVCE---PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
                 C    P+ +TY T++ G  K+      LG+        + +     P +     
Sbjct: 299 ------CNSYIPNVVTYRTLLTGFLKKKQ----LGWCKRIINMMMTEGCNPSPSL----- 343

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK---- 338
              F  L+   C       A +LF  +   G  P  V YNI I  +C   ++   +    
Sbjct: 344 ---FNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDL 400

Query: 339 -------------------------------HYETVFLLFKRLNSTGLFPDLYTYNILIN 367
                                           +E  F + K +   G  PD  TY  +I 
Sbjct: 401 AEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVIT 460

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-------ILEINSFFRQV 413
             C+  RV   F++F  +      PD  T+T LI        I +  S+F ++
Sbjct: 461 FLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEM 513



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 116/317 (36%), Gaps = 68/317 (21%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N+L+   C  G        LGR+    + P AVT+ +L++ L +  ++  A  +  ++  
Sbjct: 173 NVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSA 232

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G  +D  T  +    LC+ G    AL+L E       +F +    D +  + +I GL +
Sbjct: 233 SGFCMDRSTVGSFAQALCKEGRWGDALDLLERE-----DFKL----DTVLCTQMISGLME 283

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
            +       F+   SF    +   Y P V      + +  L+ G  K  +L   + +   
Sbjct: 284 AS------LFNEAMSFLHRMRCNSYIPNV------VTYRTLLTGFLKKKQLGWCKRIINM 331

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN- 367
           +   G  P+   +N L+   CN       + Y   + LF R+N+ G  P    YNI I  
Sbjct: 332 MMTEGCNPSPSLFNSLVHTYCN------AEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGS 385

Query: 368 ----------------------------------------CFCKIGRVSSGFVIFGRILP 387
                                                   C C +G+    F I   ++ 
Sbjct: 386 ICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMR 445

Query: 388 SCFTPDAVTFTSLIKIL 404
             F PDA T+T +I  L
Sbjct: 446 KGFVPDASTYTKVITFL 462



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 107/285 (37%), Gaps = 52/285 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   + K    D  + +  ++      P+  TY  +++  CK G       +
Sbjct: 676 PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNL 735

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  + +   +P+ VT+T+LI  L    ++     LF +++  GC  +  TY  LIN  C 
Sbjct: 736 LSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCA 795

Query: 208 TGHT---------------------------------IVALNLFEEMANGNGEFGVVCEP 234
            G                                   + +L L EEM + +        P
Sbjct: 796 AGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHD------TAP 849

Query: 235 DAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
            A  Y  +ID   K     +A  L    M   S+LN  +                 LI  
Sbjct: 850 IAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDM-----------HTSLIQA 898

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           LC  S+++ A  L+  + R G++P++  +  L++GL    + +E 
Sbjct: 899 LCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEA 943


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 146/321 (45%), Gaps = 24/321 (7%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +++L     + K  D     F  +   G+ P  +  N +++ F K  R    +V+   + 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           R       VTF  +I  LC E ++ +A      +   G + +V TYNT+I+G C  G   
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A  +F+ M       GV  +PD+ TY + I G+CKE       G         L KM  
Sbjct: 244 GARMIFDLMKC----RGV--KPDSYTYGSFISGMCKEGKLEEASGM--------LEKMKE 289

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
               + ++   + +  LIDG C    L++A +    + R GLMP V TYN+LI  L  D 
Sbjct: 290 ----IGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDC 345

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           +MDE         + K ++  GL PD  TYNILIN +C+ G V   F +   ++     P
Sbjct: 346 KMDEADG------IIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQP 399

Query: 393 DAVTFTSLIKILEINSFFRQV 413
             VT+TSLI +L      +Q 
Sbjct: 400 TRVTYTSLIYVLSKRGRMKQA 420



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 163/362 (45%), Gaps = 52/362 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  ++  M  MR  +  V +FNI+   L K             +   G+ P+  TYN 
Sbjct: 173 EKAWVLYAEMFRMR-IKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNT 231

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+ +C  GRV    ++   +      PD+ T+ S I  +C E ++ EA+ +  K++  G
Sbjct: 232 IIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIG 291

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM---------------------------AN 223
                 TYNTLI+G C  G+  +A +  ++M                           A+
Sbjct: 292 LRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEAD 351

Query: 224 G----NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           G      E G+V  PD++TY+ +I+G C+  G+          +F+  ++M        +
Sbjct: 352 GIIKEMSEKGLV--PDSVTYNILINGYCR-CGNVK-------KAFTLHDEMISK----GI 397

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
           Q   + +  LI  L K  ++K A +LF+ + R G+ P+++ +N LI G C +G MD    
Sbjct: 398 QPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDR--- 454

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
               F + K ++   + PD  T+N L+   C+ G+V +   +   +      PD +++ +
Sbjct: 455 ---AFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNT 511

Query: 400 LI 401
           LI
Sbjct: 512 LI 513



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 137/329 (41%), Gaps = 61/329 (18%)

Query: 76  VFDYMLNM--RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
            FDY   M      P V+++N+L   L      D    + K ++  GL PD  TYNILIN
Sbjct: 315 AFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILIN 374

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
            +C+ G V   F +   ++     P  VT+TSLI  L    R+ +A  LF K+   G   
Sbjct: 375 GYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFP 434

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           D+  +N LI+G C  G+   A  + +EM     +  VV  PD +T++T++ G C+E    
Sbjct: 435 DLIMFNALIDGHCANGNMDRAFAMLKEM----DQMKVV--PDEVTFNTLMQGRCREG--- 485

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
                                                       K++ AREL + +   G
Sbjct: 486 --------------------------------------------KVEAARELIEEMKSRG 501

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           + P+ ++YN LI G    G M +       F +   + S G  P L TYN LI   CK  
Sbjct: 502 IKPDHISYNTLISGYSKRGDMKD------AFRVRDEMLSIGFNPTLLTYNALIQGLCKNE 555

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
                  +   ++    TP+  T+ SLI+
Sbjct: 556 EGDHAEQLLKEMISKGITPNDNTYLSLIE 584



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 52/118 (44%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FN L     +    +    L + +   G+ PD  +YN LI+ + K G +   F V
Sbjct: 469 PDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRV 528

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
              +L   F P  +T+ +LI+ LC       A  L  ++   G   +  TY +LI G+
Sbjct: 529 RDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGI 586


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 156/344 (45%), Gaps = 36/344 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +F+ M   +   P V ++ +L   L K    D    +   ++  GL P   TYN L
Sbjct: 317 EALNLFNEM-KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNAL 375

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ +CK G +   F +L  +  +   P+  T+  LI  LC + ++ +A AL  K+     
Sbjct: 376 IDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKL 435

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              + TYN+LI+G C+      A  L   M     E G+V  PD  TYS  ID LCKE  
Sbjct: 436 SPSLITYNSLIHGQCKVNDLESAYRLLSLM----NENGLV--PDQWTYSVFIDTLCKEG- 488

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
                          + +    F  V+ + +  N   +  LIDG CK+ K+ +A  L + 
Sbjct: 489 --------------RVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLER 534

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +     +PN  TYN+LI GLC + +M E         L  ++ + G+ P + TY ILI  
Sbjct: 535 MLNDACLPNSYTYNVLIEGLCKEKKMKEASS------LVAKMLTMGVKPTVVTYTILIGE 588

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
             K G       +F  ++   + PD  T+T+      ++++F Q
Sbjct: 589 MLKDGAFDHALKVFNHMVSLGYQPDVCTYTAF-----LHAYFSQ 627



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 158/329 (48%), Gaps = 28/329 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P +  +N +   L+K    D + +++  L    + P+ YT+N ++N +CK+G V    +
Sbjct: 156 KPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAEL 215

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              +I+++   PD  T+TSLI   C    +  A  +F  +   GC+ +  +Y  LI+GLC
Sbjct: 216 YASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLC 275

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    AL LF +M   N      C P   TY+ +I  L   +GS   +      + + 
Sbjct: 276 EAGRINEALKLFADMTEDN------CCPTVRTYTVLIYAL---SGSGRKV-----EALNL 321

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            N+M        V      +  LIDGLCK +K+  AR++   +   GL+P+VVTYN LI 
Sbjct: 322 FNEMKEKGCEPNVH----TYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALID 377

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C +G +D+       F +   + S    P+  TYN LI   CK  +V     +  ++L
Sbjct: 378 GYCKEGMIDDA------FEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKML 431

Query: 387 PSCFTPDAVTFTSLI----KILEINSFFR 411
               +P  +T+ SLI    K+ ++ S +R
Sbjct: 432 ERKLSPSLITYNSLIHGQCKVNDLESAYR 460



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 143/325 (44%), Gaps = 24/325 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   L K +     ++L  ++    L P   TYN LI+  CK+  +   + +
Sbjct: 402 PNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRL 461

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +  +   PD  T++  I  LC E R+ EA  LF  ++  G + +   Y  LI+G C+
Sbjct: 462 LSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCK 521

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G   VA +L E M N        C P++ TY+ +I+GLCKE             + S +
Sbjct: 522 VGKIDVAYSLLERMLND------ACLPNSYTYNVLIEGLCKEKKMKE--------ASSLV 567

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            KM      + V+   + +  LI  + K      A ++F  +   G  P+V TY   +  
Sbjct: 568 AKML----TMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHA 623

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
             + G ++E         +  ++N  G+ PDL TY +LI+ + ++G     F     ++ 
Sbjct: 624 YFSQGMLEEVDD------VIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVD 677

Query: 388 SCFTPDAVTFTSLIKILEINSFFRQ 412
           +   P     + LIK L   +  ++
Sbjct: 678 TGCKPSLYIVSILIKNLSHENRMKE 702



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 143/339 (42%), Gaps = 40/339 (11%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++N     P   ++++    L K    +   +LF  +   G+  +   Y  LI+ +CK+G
Sbjct: 464 LMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVG 523

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++   + +L R+L     P++ T+  LI+ LC E ++ EA++L  K+   G +  V TY 
Sbjct: 524 KIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYT 583

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII-----DGLCKEAGSAN 254
            LI  + + G    AL +F  M +      +  +PD  TY+  +      G+ +E     
Sbjct: 584 ILIGEMLKDGAFDHALKVFNHMVS------LGYQPDVCTYTAFLHAYFSQGMLEEVDDV- 636

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                     + +N+      LV        +  LIDG  ++     A +  + +   G 
Sbjct: 637 ---------IAKMNEEGILPDLV-------TYTVLIDGYARLGLTHRAFDFLKCMVDTGC 680

Query: 315 MPNVVTYNILIRGLCNDGQMDETK------------HYETVFLLFKRLNSTGLFPDLYTY 362
            P++   +ILI+ L ++ +M ET+             YE    LF+++   G   D+  Y
Sbjct: 681 KPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIY 740

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             LI  FC+  R+     +   +     +P    + SL+
Sbjct: 741 GALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLL 779



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 110/269 (40%), Gaps = 35/269 (13%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           F P    + +++  L     I E   ++ +L       +++T+N ++NG C+ G+ + A 
Sbjct: 155 FKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEA- 213

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN-FLGFSCMASFSALNKMAFYF 274
              E  A+   + G+   PD  TY+++I G C+  G  N +  F  M           Y 
Sbjct: 214 ---ELYASKIVQAGL--HPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYT 268

Query: 275 PLVRVQC----------------------LCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
            L+   C                          +  LI  L    +   A  LF  +   
Sbjct: 269 NLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEK 328

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  PNV TY +LI GLC + +MDE +       +   ++  GL P + TYN LI+ +CK 
Sbjct: 329 GCEPNVHTYTVLIDGLCKENKMDEARK------MLSEMSEKGLIPSVVTYNALIDGYCKE 382

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G +   F I   +  +   P+  T+  LI
Sbjct: 383 GMIDDAFEILDLMESNSCGPNTRTYNELI 411



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 118/299 (39%), Gaps = 48/299 (16%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + AL VF++M+++   +P V ++             + V  +  ++N  G+ PD  TY +
Sbjct: 596 DHALKVFNHMVSL-GYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTV 654

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME------------ 178
           LI+ + ++G     F  L  ++ +   P     + LIK+L  E+R+ E            
Sbjct: 655 LIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSN 714

Query: 179 ------AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
                 A  LF K+   GC +DV  Y  LI G C+      A  L   M     E G+  
Sbjct: 715 TLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMK----ERGM-- 768

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGF-SCMASFSALNKMAFYFPLV----------RVQC 281
            P    Y++++D  CK    A  +     M     L  +  Y  LV          + + 
Sbjct: 769 SPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKA 828

Query: 282 LCLNFL------------CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
           +    L             LIDGL K   +    EL   +   G  PN +TY++LI GL
Sbjct: 829 VFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGL 887



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 8/200 (4%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNE-ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY 106
           S E  +KE     G   +++    E AL +F+ M+        V+ +  L     + +  
Sbjct: 695 SHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVE-HGCTIDVSIYGALIAGFCQQERL 753

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           +    L   +   G+ P    YN L++C CK+G  +    ++  ++ +   P   ++  L
Sbjct: 754 EEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLL 813

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           +  L  E    +A A+F  L   G   D   +  LI+GL +         L + M     
Sbjct: 814 VCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKG- 872

Query: 227 EFGVVCEPDAITYSTIIDGL 246
                C+P+ +TYS +I+GL
Sbjct: 873 -----CQPNPLTYSLLIEGL 887



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 50/130 (38%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + +  R   P    +N L  C  K   Y   + L   +   GL P   +Y +L+      
Sbjct: 761 HHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIE 820

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G       V   +L   +  D V +  LI  L     + E + L   +   GC+ +  TY
Sbjct: 821 GSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTY 880

Query: 199 NTLINGLCRT 208
           + LI GL RT
Sbjct: 881 SLLIEGLERT 890


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 157/336 (46%), Gaps = 26/336 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F+  +      P V SFN++   + K       L L +R++  G  PD  T+NI
Sbjct: 215 QDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNI 274

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           L+N  C+   VS G  VL R+ R     P+ VT+TS+I   C   R+ +A A++  +   
Sbjct: 275 LVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAV 334

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +V TYN LING  + G+   A+ ++++M          C PD +T+S++IDG C+ 
Sbjct: 335 GTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRR------CLPDVVTFSSLIDGYCR- 387

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
            G  +        +     +MA Y     +Q     F  +I   CK ++   A    + +
Sbjct: 388 CGQLD-------DAMKIWTEMAQY----HIQPNAHTFCIIIHTFCKQNRSGEALHFLKKM 436

Query: 310 P-RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
             R  + P    YN +I  LC  G++DE        ++   +   G  PD YTY ILI  
Sbjct: 437 NMRTDIAPQAFIYNPVIDVLCKGGKVDEAN------MILIEMEEKGCRPDKYTYTILIIG 490

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            C  GR++     F +++ +  +PD++   S I  L
Sbjct: 491 HCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCL 526



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 162/374 (43%), Gaps = 43/374 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL +FD M +     P     + L G  A     D   +L  + +  G   + Y YN L
Sbjct: 145 DALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDAAAALLSKASQFGCSIEAYAYNKL 204

Query: 132 INCFCKMGRVSHGFVVL-GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++ F   GRV     +  G I    ++PD  +F  +IK +C    + +A  L  ++  FG
Sbjct: 205 MDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFG 264

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE- 249
           C  D  T+N L+NGLCR         +   +         VC P+ +TY+++I G CK  
Sbjct: 265 CSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDG-----VCMPNVVTYTSVISGYCKAG 319

Query: 250 ---------------AGSANFLGFSCM-----ASFSALNKMAFYFPLVRVQCL--CLNFL 287
                            S N + ++ +      + +  + +A Y  ++  +CL   + F 
Sbjct: 320 RMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFS 379

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LIDG C+  +L  A +++  + +  + PN  T+ I+I   C   +  E  H+       
Sbjct: 380 SLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHF------L 433

Query: 348 KRLN-STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----- 401
           K++N  T + P  + YN +I+  CK G+V    +I   +      PD  T+T LI     
Sbjct: 434 KKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCM 493

Query: 402 --KILEINSFFRQV 413
             +I E  +FF ++
Sbjct: 494 KGRIAEAVTFFHKM 507



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 137/317 (43%), Gaps = 62/317 (19%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           P   S+  +   + ++  +   L LF ++ + +G FP+    + L       G +     
Sbjct: 125 PSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDAAAA 184

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC-ELDVFTYNTLINGL 205
           +L +  +   + +A  +  L+       R+ +A ALF      G    DV+++N +I G+
Sbjct: 185 LLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGV 244

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G    AL L E M     EFG  C PD +T++ +++GLC+                 
Sbjct: 245 CKVGDVQKALELVERM----DEFG--CSPDTVTHNILVNGLCRAK--------------- 283

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL-MPNVVTYNIL 324
                                        ++SK    RE+ + L R G+ MPNVVTY  +
Sbjct: 284 -----------------------------EVSK---GREVLRRLQRDGVCMPNVVTYTSV 311

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I G C  G+M      E    ++  + + G  P++ TYN+LIN + K G + S   ++ +
Sbjct: 312 ISGYCKAGRM------EDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQ 365

Query: 385 ILPSCFTPDAVTFTSLI 401
           ++     PD VTF+SLI
Sbjct: 366 MILRRCLPDVVTFSSLI 382



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 38/257 (14%)

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           CA S +   +AL +            +Y  +I+ +C++G    AL LF++M + +G F  
Sbjct: 103 CASSTLHLFSALHSPHSQLAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYF-- 160

Query: 231 VCEPDAITYSTIIDGLC--------KEAGSANFLGFSCMASFSALNK-MAFYFPLVRVQC 281
              P+A  + + + G C          A  +    F C     A NK M  +    RVQ 
Sbjct: 161 ---PNA-RFLSFLSGSCAAAGLLDAAAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQD 216

Query: 282 L----------------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                              +F  +I G+CK+  ++ A EL + +   G  P+ VT+NIL+
Sbjct: 217 AVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILV 276

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGL-FPDLYTYNILINCFCKIGRVSSGFVIFGR 384
            GLC   ++ + +       + +RL   G+  P++ TY  +I+ +CK GR+     ++  
Sbjct: 277 NGLCRAKEVSKGRE------VLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYND 330

Query: 385 ILPSCFTPDAVTFTSLI 401
           ++    +P+ VT+  LI
Sbjct: 331 MVAVGTSPNVVTYNVLI 347



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 110/287 (38%), Gaps = 60/287 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  +     K    +  ++++  +   G  P+  TYN+LIN + K G +     V
Sbjct: 303 PNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAV 362

Query: 148 LGR-ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
             + ILR C  PD VTF+SLI   C   ++ +A  ++T++  +  + +  T+  +I+  C
Sbjct: 363 YQQMILRRCL-PDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFC 421

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +   +  AL+  ++M            P A  Y+ +ID LCK                  
Sbjct: 422 KQNRSGEALHFLKKM-----NMRTDIAPQAFIYNPVIDVLCKGG---------------- 460

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                                          K+  A  +   +   G  P+  TY ILI 
Sbjct: 461 -------------------------------KVDEANMILIEMEEKGCRPDKYTYTILII 489

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           G C  G++ E          F ++  TG  PD    N  I+C  K G
Sbjct: 490 GHCMKGRIAEA------VTFFHKMVETGCSPDSIVVNSFISCLLKSG 530


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 169/356 (47%), Gaps = 39/356 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+AL +F  M++M+  +P    + ++ G L K    D   S F+++  +G  PD+ TY +
Sbjct: 31  NKALQIFHQMIDMK-VKPDAFLYTVVIGHLCKINKLDLAASYFEQMVQSGCLPDKVTYTV 89

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++   K  +   G  +   +L    +P+ VT+ +++   C   RI +A +L  +L+  G
Sbjct: 90  LVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTG 149

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
                  Y+TLI+GLC+      A  LF EMA G+ +       D I Y++ I GLCK  
Sbjct: 150 RSPSGSLYSTLIDGLCKHDRHEEARELF-EMAAGDVQ-------DVIVYTSFISGLCKAG 201

Query: 249 -------------EAGSA------NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC- 288
                        EAG A      N + +S                 +  +C+    +C 
Sbjct: 202 KLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCT 261

Query: 289 -LIDGLCKISKLKIARELFQSLPRAG-LMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
            L+DGLCK  +++ A  + + +  AG   P+VVTY+ +I GLC   ++D+       +++
Sbjct: 262 VLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDA------YIV 315

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            +++   G  PD+ TY  +I+ FCK+GR+     +F R+       D V +  LI+
Sbjct: 316 LQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIR 371



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 145/344 (42%), Gaps = 50/344 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +F  L   L +    +  L +F ++    + PD + Y ++I   CK+ ++      
Sbjct: 12  PTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASY 71

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++++S   PD VT+T L+  L    +  +   +F ++   G   ++ TY T++NG C+
Sbjct: 72  FEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCK 131

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    AL+L   +  G G       P    YST+IDGLCK            MA+    
Sbjct: 132 AGRIDQALSLMRRL-KGTGR-----SPSGSLYSTLIDGLCKHDRHEEARELFEMAAGDVQ 185

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           + +               +   I GLCK  KL  A+ +   +  AG  P+ V+YN++I  
Sbjct: 186 DVIV--------------YTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYS 231

Query: 328 LCNDGQMDETKHY------------------------------ETVFLLFKRLNSTGLFP 357
           LC D ++ E K                                E   +L + L +    P
Sbjct: 232 LCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAP 291

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + TY+ +I+  CK  R+   +++  ++  +   PD VT+T++I
Sbjct: 292 SVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAII 335



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 125/294 (42%), Gaps = 49/294 (16%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F+ ML+ +   P + ++  +     K    D  LSL +RL  TG  P    Y+ LI+  
Sbjct: 106 IFEEMLS-KGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGL 164

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK  R      +    + +    D + +TS I  LC   ++ EA A+  K+   GC  D 
Sbjct: 165 CKHDRHEEARELFE--MAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDP 222

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV-VC---------------------- 232
            +YN +I  LC+      A  L ++        GV VC                      
Sbjct: 223 VSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILER 282

Query: 233 -------EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--C 283
                   P  +TYS +IDGLCK    A+ L      ++  L KM       R  C+   
Sbjct: 283 MLEAGDRAPSVVTYSAVIDGLCK----ADRLD----DAYIVLQKMR------RAGCVPDV 328

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           + +  +ID  CK+ +L  ARELFQ +   G   +VV YNILIRG C   ++DE 
Sbjct: 329 VTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAAKVDEA 382



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 131/291 (45%), Gaps = 28/291 (9%)

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           L   +   G+ P   T+  LI   C++   +    +  +++     PDA  +T +I  LC
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGV 230
             +++  AA+ F ++   GC  D  TY  L++ L +         +FEEM + G+     
Sbjct: 61  KINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHS---- 116

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
              P+ +TY+T+++G CK AG  +           AL+ M       R     L +  LI
Sbjct: 117 ---PELVTYATVVNGYCK-AGRID----------QALSLMRRLKGTGRSPSGSL-YSTLI 161

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           DGLCK  + + ARELF+    AG + +V+ Y   I GLC  G++DE K          ++
Sbjct: 162 DGLCKHDRHEEARELFEMA--AGDVQDVIVYTSFISGLCKAGKLDEAKAVHV------KM 213

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              G  PD  +YN++I   CK  RVS    +  + +     P     T L+
Sbjct: 214 IEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLV 264



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 3/157 (1%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYTYN 129
           +EA  + D  +  R   P V    +L   L K++  +    + +R+   G   P   TY+
Sbjct: 239 SEAKELMDQAME-RKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYS 297

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +I+  CK  R+   ++VL ++ R+   PD VT+T++I   C   R+ EA  LF ++   
Sbjct: 298 AVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHER 357

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           GC  DV  YN LI G CR      A+ + EEMA G G
Sbjct: 358 GCASDVVAYNILIRGYCRAAKVDEAIAMIEEMA-GRG 393



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L   +  AG+ P +VT+  LIR LC      E         +F ++    + PD + Y +
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLC------ELNFTNKALQIFHQMIDMKVKPDAFLYTV 54

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +I   CKI ++      F +++ S   PD VT+T L+  L
Sbjct: 55  VIGHLCKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSL 94


>gi|308044519|ref|NP_001183314.1| uncharacterized protein LOC100501715 [Zea mays]
 gi|238010730|gb|ACR36400.1| unknown [Zea mays]
          Length = 320

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/277 (35%), Positives = 136/277 (49%), Gaps = 28/277 (10%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKLR 187
           +ILI CFC +GR+   F   G  LR+ +    V    LIK LC   R  +A  + F ++ 
Sbjct: 33  DILIRCFCNVGRLDLAFAAFGLFLRTGWRVQNVVLNQLIKGLCDGKRTGDAMDMVFRRMP 92

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGL 246
             G   DVF+YN LI GLC    +  AL L   M ANG    G  C PD ++Y+ +IDGL
Sbjct: 93  ELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANG----GYNCSPDVVSYNIVIDGL 148

Query: 247 CKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
            KE     A FL       F  +    F   LV        +  +IDGLCK   +  A  
Sbjct: 149 FKEGEVDKAYFL-------FHEMPGQGFPPDLV-------TYSSVIDGLCKAQAMDKAEA 194

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
             Q +   G+MPN   YN LI G C+ GQ+ E         L K+++  GL  ++ TYN+
Sbjct: 195 SLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVR------LLKKMSGGGLQLNVVTYNM 248

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LI+ +CKIGR +    IF  ++     P+A T+ SL+
Sbjct: 249 LIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLL 285



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 123/295 (41%), Gaps = 34/295 (11%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF-VVLGRIL 152
           +IL  C       D   + F     TG        N LI   C   R      +V  R+ 
Sbjct: 33  DILIRCFCNVGRLDLAFAAFGLFLRTGWRVQNVVLNQLIKGLCDGKRTGDAMDMVFRRMP 92

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG---CELDVFTYNTLINGLCRTG 209
              +TPD  ++ +LIK LCAE +  EA  L   +   G   C  DV +YN +I+GL + G
Sbjct: 93  ELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANGGYNCSPDVVSYNIVIDGLFKEG 152

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-------EAGSANFLGFSCMA 262
               A  LF EM       G    PD +TYS++IDGLCK       EA     L    M 
Sbjct: 153 EVDKAYFLFHEMP------GQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMP 206

Query: 263 S----------FSALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELF 306
           +          + +L ++     L++      +Q   + +  LID  CKI +   AR +F
Sbjct: 207 NTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIF 266

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
            S+ R G  PN  TY  L+ G    G + +  H     ++   +   GL P+L +
Sbjct: 267 DSMVRRGQKPNATTYCSLLHGYATKGALVDM-HDLLDLMIRDEMRQNGLRPNLVS 320



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+NI+   L K    D    LF  +   G  PD  TY+ +I+  CK   +      
Sbjct: 136 PDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEAS 195

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++L     P+   + SLI   C+  +++EA  L  K+   G +L+V TYN LI+  C+
Sbjct: 196 LQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCK 255

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
            G    A ++F+ M    G+     +P+A TY +++ G
Sbjct: 256 IGRCAEARSIFDSMVR-RGQ-----KPNATTYCSLLHG 287



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +++ +   L K +  D   +  +++   G+ P+   YN LI+ +C +G++     +
Sbjct: 171 PDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRL 230

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++       + VT+  LI   C   R  EA ++F  +   G + +  TY +L++G   
Sbjct: 231 LKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYAT 290

Query: 208 TG-----HTIVALNLFEEM 221
            G     H ++ L + +EM
Sbjct: 291 KGALVDMHDLLDLMIRDEM 309


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 115/404 (28%), Positives = 175/404 (43%), Gaps = 68/404 (16%)

Query: 42  TVKDRA-SLEQFLKERCKSSGEGDITSITPNEALCVFDYML-NMRPSRPPVTSFNILFGC 99
           TV+DR   LE+ +  R +S       S+  ++AL +FD +L + RP+   V +FN +   
Sbjct: 7   TVRDRCLELERIIAARARSG------SLGLDDALKLFDELLIHARPA--SVVAFNQILNA 58

Query: 100 LAKTKHYDT-----------VLSLFKRLNLT---GLFPDRYTYNILINCFCKMGRVSHGF 145
           +++                 V+SLF R+       + P+  TY+ILI C C+MGR+ H F
Sbjct: 59  VSRASRASGRRSSSTSESELVVSLFNRMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSF 118

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA-ALFTKLRVFGCELDVFTYNTLING 204
              G IL++ +  + +    L+K LC   R+ EA   L  ++   GC  D  +Y+ L+ G
Sbjct: 119 ATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKG 178

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMAS 263
            C       AL L   MAN +G     C P+ +TY+T+IDGLCK        G F  M  
Sbjct: 179 FCNENRAEEALELLRMMANDHGR---SCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMID 235

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
                    Y              CLI G   I K K   ++ + +   GL P+  TY  
Sbjct: 236 NGVKPNNDTYN-------------CLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGS 282

Query: 324 LIRGLCNDGQMDE------------TKHYETVFL--------------LFKRLNSTGLFP 357
           L+  LC   +M                H   +F               +F ++   GL P
Sbjct: 283 LLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSP 342

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++  Y  LI+  CK+GRV    V F +++    TP+ V F SL+
Sbjct: 343 NVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLV 386



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 140/317 (44%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    FNI F   AK    D  + +F ++   GL P+   Y  LI+  CK+GRV    V 
Sbjct: 307 PDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVK 366

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++    TP+ V F SL+  LC   +   A  L  ++   G   +   +NTLI  LC 
Sbjct: 367 FNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCN 426

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  +    L + M +      V   PDA +Y+ +I G C  AG  +         F  +
Sbjct: 427 VGRVMEGRRLIDLMEH------VGVRPDAFSYTPLISGYCL-AGRTD----EAEKVFDGM 475

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             +      V        +  L+ G C  S++  A  LF+ + R G+ P VVTYN ++ G
Sbjct: 476 VSIGLSPTEV-------TYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHG 528

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           L       +TK +     L+  + ++G   D+YTYNI++N  CK   V   F +F  +  
Sbjct: 529 LF------QTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCS 582

Query: 388 SCFTPDAVTFTSLIKIL 404
                + +TFT +I  L
Sbjct: 583 KGLQLNIITFTIMIGAL 599



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 124/323 (38%), Gaps = 59/323 (18%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   S+  L          D    +F  +   GL P   TYN L++ +C   R+   + 
Sbjct: 446 RPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYC 505

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +LR   TP  VT+ +++  L    R  EA  L+  +   G + D++TYN ++NGLC
Sbjct: 506 LFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLC 565

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           ++     A  +F+                          LC +    N + F+ M     
Sbjct: 566 KSNCVDEAFKMFQS-------------------------LCSKGLQLNIITFTIM----- 595

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                                  I  L K  + + A +LF ++P  GL+PNVVTY ++  
Sbjct: 596 -----------------------IGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAE 632

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            L  +G ++E         LF  +   G  P+    N L+      G +S       ++ 
Sbjct: 633 NLIEEGSLEEFDS------LFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLD 686

Query: 387 PSCFTPDAVTFTSLIKILEINSF 409
              F+ +A T + LI I   + +
Sbjct: 687 ERNFSVEASTTSLLISIFTSDEY 709



 Score = 42.0 bits (97), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 343 VFLLFKRLN---STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
           V  LF R+    S  + P+  TY+ILI C C++GR+   F  FG IL + +  + +    
Sbjct: 79  VVSLFNRMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQ 138

Query: 400 LIKIL 404
           L+K L
Sbjct: 139 LLKGL 143


>gi|414883803|tpg|DAA59817.1| TPA: hypothetical protein ZEAMMB73_625576 [Zea mays]
          Length = 350

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/278 (35%), Positives = 136/278 (48%), Gaps = 28/278 (10%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKLR 187
           +ILI CFC +GR+   F   G  LR+ +    V    LIK LC   R  +A  + F ++ 
Sbjct: 33  DILIRCFCNVGRLDLAFAAFGLFLRTGWRVQNVVLNQLIKGLCDGKRTGDAMDMVFRRMP 92

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGL 246
             G   DVF+YN LI GLC    +  AL L   M ANG    G  C PD ++Y+ +IDGL
Sbjct: 93  ELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANG----GYNCSPDVVSYNIVIDGL 148

Query: 247 CKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
            KE     A FL       F  +    F   LV        +  +IDGLCK   +  A  
Sbjct: 149 FKEGEVDKAYFL-------FHEMPGQGFPPDLV-------TYSSVIDGLCKAQAMDKAEA 194

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
             Q +   G+MPN   YN LI G C+ GQ+ E         L K+++  GL  ++ TYN+
Sbjct: 195 SLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVR------LLKKMSGGGLQLNVVTYNM 248

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           LI+ +CKIGR +    IF  ++     P+A T+ SL+ 
Sbjct: 249 LIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLH 286



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 134/330 (40%), Gaps = 39/330 (11%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF-VVLGRIL 152
           +IL  C       D   + F     TG        N LI   C   R      +V  R+ 
Sbjct: 33  DILIRCFCNVGRLDLAFAAFGLFLRTGWRVQNVVLNQLIKGLCDGKRTGDAMDMVFRRMP 92

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG---CELDVFTYNTLINGLCRTG 209
              +TPD  ++ +LIK LCAE +  EA  L   +   G   C  DV +YN +I+GL + G
Sbjct: 93  ELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANGGYNCSPDVVSYNIVIDGLFKEG 152

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-------EAGSANFLGFSCMA 262
               A  LF EM       G    PD +TYS++IDGLCK       EA     L    M 
Sbjct: 153 EVDKAYFLFHEMP------GQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMP 206

Query: 263 S----------FSALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELF 306
           +          + +L ++     L++      +Q   + +  LID  CKI +   AR +F
Sbjct: 207 NTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIF 266

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
            S+ R G  PN  TY  L+ G    G + +         L   +   G+  +   +NILI
Sbjct: 267 DSMVRRGQKPNATTYCSLLHGYATKGALVDMHD------LLDLMIRDGIPIEHRVFNILI 320

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
             + K   V     +F  +  +   P+ V+
Sbjct: 321 YAYAKHETVDKAMAVFAEMRQNGLRPNLVS 350



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 103/236 (43%), Gaps = 24/236 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+NI+   L K    D    LF  +   G  PD  TY+ +I+  CK   +      
Sbjct: 136 PDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEAS 195

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++L     P+   + SLI   C+  +++EA  L  K+   G +L+V TYN LI+  C+
Sbjct: 196 LQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCK 255

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A ++F+ M    G+     +P+A TY +++ G                A+  AL
Sbjct: 256 IGRCAEARSIFDSMVR-RGQ-----KPNATTYCSLLHGY---------------ATKGAL 294

Query: 268 NKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             M     L+    + +    F  LI    K   +  A  +F  + + GL PN+V+
Sbjct: 295 VDMHDLLDLMIRDGIPIEHRVFNILIYAYAKHETVDKAMAVFAEMRQNGLRPNLVS 350


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 154/318 (48%), Gaps = 22/318 (6%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V +++ +   L KT      L + + +   G+ PD  TY I+++  C+ G+V     
Sbjct: 7   EPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADE 66

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  +++    + + V + +LI  LC +  I  A  L  ++   G E D  TYNT+++GLC
Sbjct: 67  LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLC 126

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G    A   F+ M +          PD + Y+ ++D L KE   A   G      F  
Sbjct: 127 RMGKVSEAKQFFDSMPSRG------YSPDVVAYNGLLDALYKEGKVAEAWGL-----FKT 175

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           ++ MA      +V    + +  LIDG C++ K   A +LF+ +   G MP+ VTYN ++ 
Sbjct: 176 MD-MADR----KVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILL 230

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL     MDE +       +FK++  +G  P+  TY+I+++  C++G ++    ++  + 
Sbjct: 231 GLARKSNMDEAEE------MFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMT 284

Query: 387 PSCFTPDAVTFTSLIKIL 404
              F+PD +   ++I +L
Sbjct: 285 EKRFSPDVLLCNAVIDML 302



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 169/338 (50%), Gaps = 31/338 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F  ++  +   P   ++N +   LA+  + D    +FK++  +G  P+  TY+I
Sbjct: 204 DEAMKLFKDVI-AKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSI 262

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++  C++G ++    +   +    F+PD +   ++I  LC   ++ +A  +  ++   G
Sbjct: 263 VLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIG 322

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
              DV TYN L++GLC+T     A  LF  M + NG     C PD ++YS +++GLCK  
Sbjct: 323 AVPDVVTYNILLDGLCKTNLVDKAHELFSTMVD-NG-----CAPDIVSYSVVLNGLCKTN 376

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           +   A  L F  M     +       P V      + F  L+DGLCK  KL  A++L   
Sbjct: 377 KVHDARVL-FDRMIERKLV-------PDV------VTFNILMDGLCKAGKLDEAKDLLDV 422

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +    ++P+ VT   L+ GLC D + DE         LF+ +   G   D+  +NI++  
Sbjct: 423 MSEHNVLPDGVTCTTLMHGLCRDKRTDEA------VRLFQYMVEKGTVADVLPHNIVLAG 476

Query: 369 FCKIGRVSSGFVIFGRILPSC--FTPDAVTFTSLIKIL 404
            C+ G+++   + F  ++ S   F+PD VT+T+L+  L
Sbjct: 477 LCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNAL 514



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 141/304 (46%), Gaps = 29/304 (9%)

Query: 74  LCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           L +++ M   R S P V   N +   L K K  D    + + ++  G  PD  TYNIL++
Sbjct: 277 LELYEEMTEKRFS-PDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLD 335

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK   V     +   ++ +   PD V+++ ++  LC  +++ +A  LF ++       
Sbjct: 336 GLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVP 395

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           DV T+N L++GLC+ G    A +L + M+  N        PD +T +T++ GLC++  + 
Sbjct: 396 DVVTFNILMDGLCKAGKLDEAKDLLDVMSEHN------VLPDGVTCTTLMHGLCRDKRTD 449

Query: 254 NFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
             +  F  M     +  +             L    ++ GLC+  KL  A   F+S+ ++
Sbjct: 450 EAVRLFQYMVEKGTVADV-------------LPHNIVLAGLCREGKLAQALLFFKSMVKS 496

Query: 313 G--LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
                P+VVTY  L+  L   G++D+   Y      F+++  +G  PD   YN L+N   
Sbjct: 497 DGEFSPDVVTYTTLVNALIEAGRVDQAVDY------FQQMTGSGCAPDYVAYNTLMNGLR 550

Query: 371 KIGR 374
           K GR
Sbjct: 551 KQGR 554



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + D M         VT   ++ G L + K  D  + LF+ +   G   D   +NI
Sbjct: 414 DEAKDLLDVMSEHNVLPDGVTCTTLMHG-LCRDKRTDEAVRLFQYMVEKGTVADVLPHNI 472

Query: 131 LINCFCKMGRVSHGFVVLGRILRSC--FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           ++   C+ G+++   +    +++S   F+PD VT+T+L+  L    R+ +A   F ++  
Sbjct: 473 VLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTG 532

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            GC  D   YNTL+NGL + G  I A  L + M
Sbjct: 533 SGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAM 565



 Score = 44.7 bits (104), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 3/128 (2%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLF-PDRYTY 128
           +EA+ +F YM+  + +   V   NI+   L +       L  FK +    G F PD  TY
Sbjct: 449 DEAVRLFQYMVE-KGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTY 507

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
             L+N   + GRV        ++  S   PD V + +L+  L  + R ++A  L   ++ 
Sbjct: 508 TTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKE 567

Query: 189 FGCELDVF 196
            G   D F
Sbjct: 568 KGFLSDCF 575


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 149/318 (46%), Gaps = 30/318 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++N L   L K   +        +L   GL PD +TYN LI  +CK G V     
Sbjct: 283 KPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAER 342

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L   + + F PD  T+ SLI  LC E     A ALF +    G + +V  YNTLI GL 
Sbjct: 343 ILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLS 402

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G  + A  L  EM+    E G++  P+  T++ +++GLCK           C++    
Sbjct: 403 NQGLILEAAQLASEMS----EKGLI--PEVQTFNILVNGLCK---------MGCVSDADG 447

Query: 267 LNKMAF---YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           L K+     YFP +        F  LI G     K++ A E+   +   G+ P+V TYN 
Sbjct: 448 LVKVMISKGYFPDI------FTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNS 501

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L+ GLC      +T  YE V   +K +   G  P+L+T+NIL+   C+  ++     +  
Sbjct: 502 LLNGLC------KTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLE 555

Query: 384 RILPSCFTPDAVTFTSLI 401
            +      PDAVTF +LI
Sbjct: 556 EMKNKSVNPDAVTFGTLI 573



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 153/326 (46%), Gaps = 28/326 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           +++FN L   L K         L  ++   G+ P+ +TYN  I   C+ G +     ++G
Sbjct: 216 LSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVG 275

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R++     PD VT+  LI  LC  S+  EA     KL   G E D FTYNTLI G C+ G
Sbjct: 276 RLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGG 335

Query: 210 HTIVALNLFEEMANGNGEF-GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS-AL 267
              +A  +       N  F G V  PD  TY ++IDGLC E G  N      +A F+ AL
Sbjct: 336 MVQLAERILV-----NAVFNGFV--PDEFTYRSLIDGLCHE-GETN----RALALFNEAL 383

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K       ++   +  N   LI GL     +  A +L   +   GL+P V T+NIL+ G
Sbjct: 384 GKG------IKPNVILYN--TLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNG 435

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G + +         L K + S G FPD++T+NILI+ +    ++ +   I   ++ 
Sbjct: 436 LCKMGCVSDADG------LVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMD 489

Query: 388 SCFTPDAVTFTSLIKILEINSFFRQV 413
           +   PD  T+ SL+  L   S +  V
Sbjct: 490 NGVDPDVYTYNSLLNGLCKTSKYEDV 515



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 137/309 (44%), Gaps = 23/309 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FNIL   L K         L K +   G FPD +T+NILI+ +    ++ +   +
Sbjct: 424 PEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEI 483

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++ +   PD  T+ SL+  LC  S+  +    +  +   GC  ++FT+N L+  LCR
Sbjct: 484 LDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCR 543

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 AL L EEM N +        PDA+T+ T+IDG CK              +++  
Sbjct: 544 YHKLDKALGLLEEMKNKS------VNPDAVTFGTLIDGFCKNG--------DLDGAYTLF 589

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            KM     +  V C    +  +I    +   + +A +LFQ +    L P+  TY +++ G
Sbjct: 590 RKME---EVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDG 646

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  G +D        FLL   +   G  P L T   +INC C   RV     I  R++ 
Sbjct: 647 FCKTGNVDLGYK----FLL--EMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQ 700

Query: 388 SCFTPDAVT 396
               P+AV 
Sbjct: 701 KGLVPEAVN 709



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 147/335 (43%), Gaps = 26/335 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N AL +F+  L  +  +P V  +N L   L+          L   ++  GL P+  T+NI
Sbjct: 373 NRALALFNEALG-KGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNI 431

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  CKMG VS    ++  ++   + PD  TF  LI     + ++  A  +   +   G
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNG 491

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV+TYN+L+NGLC+T      +  ++ M          C P+  T++ +++ LC+  
Sbjct: 492 VDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKG------CAPNLFTFNILLESLCRYH 545

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                LG        ++N  A            + F  LIDG CK   L  A  LF+ + 
Sbjct: 546 KLDKALGLLEEMKNKSVNPDA------------VTFGTLIDGFCKNGDLDGAYTLFRKME 593

Query: 311 RAGLMP-NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              ++  +  TYNI+I          E  +      LF+ +    L PD YTY ++++ F
Sbjct: 594 EVYMVSCSTPTYNIIIHAFT------EKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGF 647

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           CK G V  G+     ++ + F P   T   +I  L
Sbjct: 648 CKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCL 682



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 159/383 (41%), Gaps = 59/383 (15%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ VF+ M +     P V S+N +   L  + ++D    ++ R+   G+ PD Y++ I
Sbjct: 93  QEAVNVFERM-DFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTI 151

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            +  FC+  R      +L  +       + V + +++     E+   E   LF K+   G
Sbjct: 152 RMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASG 211

Query: 191 CELDVFTYNTLINGLCRTGH------------------TIVALNLFEEMANGNGEFGVVC 232
             L + T+N L++ LC+ G                    +   N F +     GE     
Sbjct: 212 VSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAV 271

Query: 233 -----------EPDAITYSTIIDGLCKEAG---SANFLGFSCMA-----SFSALNKMAFY 273
                      +PD +TY+ +I GLCK +    +  +LG          SF+    +A Y
Sbjct: 272 RMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGY 331

Query: 274 FPLVRVQC---LCLN------------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                VQ    + +N            +  LIDGLC   +   A  LF      G+ PNV
Sbjct: 332 CKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNV 391

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           + YN LI+GL N G + E         L   ++  GL P++ T+NIL+N  CK+G VS  
Sbjct: 392 ILYNTLIKGLSNQGLILEAAQ------LASEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445

Query: 379 FVIFGRILPSCFTPDAVTFTSLI 401
             +   ++   + PD  TF  LI
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILI 468



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 113/276 (40%), Gaps = 61/276 (22%)

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL---------------- 205
            +   +K+   + ++ EA  +F ++  + CE  VF+YN +++ L                
Sbjct: 78  VYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRM 137

Query: 206 -------------------CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
                              CRT     AL L   M++        CE + + Y T++ G 
Sbjct: 138 RDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQG------CEMNVVAYCTVVGGF 191

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN-FLCLIDGLCKISKLKIAREL 305
            +E    NF        +    KM     L     LCL+ F  L+  LCK   +K   +L
Sbjct: 192 YEE----NFKD----EGYELFGKM-----LASGVSLCLSTFNKLLHVLCKKGDVKECEKL 238

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
              + + G++PN+ TYN  I+GLC  G++D          +  RL   G  PD+ TYN L
Sbjct: 239 LDKVIKRGVLPNLFTYNFFIQGLCQKGELD------AAVRMVGRLIDQGPKPDVVTYNYL 292

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           I   CK  +     V  G+++     PD+ T+ +LI
Sbjct: 293 IYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLI 328


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 141/310 (45%), Gaps = 16/310 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     +D    + K +   G  PD  TY+ +I   C+  +V   F++   +      P
Sbjct: 429 CLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIP 488

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T LI   C    I +A + F ++   GC   V TY  L++   +T     A ++F
Sbjct: 489 DVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIF 548

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLV 277
             M +        C P+ ITYS ++DGLCK   S      ++ M   S      FYF   
Sbjct: 549 HRMVDAG------CAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGE 602

Query: 278 RVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
               +  N +    LIDGLCK  K+  A+EL   +   G  PN + Y+ LI G C  G++
Sbjct: 603 HTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKL 662

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           D  +       +F R++  G  P ++TY  LI+   K  R+     +  ++L S  TP+ 
Sbjct: 663 DNAQE------VFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNV 716

Query: 395 VTFTSLIKIL 404
           VT+T++I  L
Sbjct: 717 VTYTAMIDGL 726



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 146/327 (44%), Gaps = 28/327 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  ++++ +   L +    +    LF+ +   G+ PD YTY ILI+ FCK+G +      
Sbjct: 453 PDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSW 512

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +     +P  VT+T+L+       ++ +A+ +F ++   GC  +  TY+ L++GLC+
Sbjct: 513 FDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCK 572

Query: 208 TGHTIVALNLFEEMANGN----------GEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
            G +  A  ++ +M   +          GE      P+ +TY  +IDGLCK     +   
Sbjct: 573 AGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQE 632

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
              + S +        +              LIDG CK+ KL  A+E+F  + + G +P 
Sbjct: 633 LLDVMSSNGCEPNHIIYD------------ALIDGFCKVGKLDNAQEVFFRMSKCGYLPT 680

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           V TY  LI  +  D ++D          +  ++  +   P++ TY  +I+  C+IG    
Sbjct: 681 VHTYTSLIDAMFKDRRLD------LAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQK 734

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKIL 404
              +   +      P+ VT+TSLI  L
Sbjct: 735 ALKLLSMMEKRGCNPNVVTYTSLIDGL 761



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 139/330 (42%), Gaps = 40/330 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++ IL     K    +   S F  +   G  P   TY  L++ + K  +V     +
Sbjct: 488 PDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDI 547

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL----------------RVFGC 191
             R++ +   P+ +T+++L+  LC      +A  ++ K+                     
Sbjct: 548 FHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSI 607

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +V TY  LI+GLC+    + A  L + M++ NG     CEP+ I Y  +IDG CK   
Sbjct: 608 APNVVTYGALIDGLCKAHKVVDAQELLDVMSS-NG-----CEPNHIIYDALIDGFCKVGK 661

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             N         F  ++K   Y P V        +  LID + K  +L +A ++   +  
Sbjct: 662 LDN-----AQEVFFRMSKCG-YLPTVH------TYTSLIDAMFKDRRLDLAIKVLSQMLE 709

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           +   PNVVTY  +I GLC  G+       +    L   +   G  P++ TY  LI+   K
Sbjct: 710 SSCTPNVVTYTAMIDGLCRIGEC------QKALKLLSMMEKRGCNPNVVTYTSLIDGLGK 763

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G+V     +F +++     P+ VT+  LI
Sbjct: 764 SGKVDMSLQLFTQMITQGCAPNYVTYRVLI 793



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 143/352 (40%), Gaps = 60/352 (17%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   ++N L   LA     D    + K ++  G   D++T        CK GR S   V
Sbjct: 204 RPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGRWSDALV 263

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   I R  F  D V  T +I  L   S   EA +   ++R   C  +V TY TL+ G  
Sbjct: 264 M---IEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFL 320

Query: 207 RTGH-----TIVAL----------NLFEEMANG--------------NGEFGVVCEPDAI 237
           +         I+++          +LF  + +               N   G  C P  +
Sbjct: 321 KKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYV 380

Query: 238 TYSTIIDGLC--KEAGSANFLGFS------CMASFSALNKMAFYFPLVRVQCLCLNFLCL 289
            Y+  I  +C  +E  S + L  +       +AS   LNK              +N    
Sbjct: 381 VYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNK--------------VNTANF 426

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
              LC + K   A ++ + + R G +P+  TY+ +I  LC      E    E  FLLF+ 
Sbjct: 427 ARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLC------EAMKVEKAFLLFQE 480

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + S G+ PD+YTY ILI+ FCK+G +      F  +     +P  VT+T+L+
Sbjct: 481 MKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALL 532



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 142/325 (43%), Gaps = 26/325 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P    ++ L     K    D    +F R++  G  P  +TY  LI+   K  R+     
Sbjct: 643 EPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIK 702

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL ++L S  TP+ VT+T++I  LC      +A  L + +   GC  +V TY +LI+GL 
Sbjct: 703 VLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLG 762

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           ++G   ++L LF +M          C P+ +TY  +I+  C    +A  L      + S 
Sbjct: 763 KSGKVDMSLQLFTQMITQG------CAPNYVTYRVLINHCC----AAGLLD----EAHSL 808

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L++M   +    VQ  C     ++ G  K  K   +  L + L   G++     Y +LI 
Sbjct: 809 LSEMKQTYWPKYVQGYC----SVVQGFSK--KFIASLGLLEELESHGMVSIAPVYGLLID 862

Query: 327 GLCNDGQMDET-KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
                G++++  + ++ +  +   LN T       TY  LI   C   ++   F ++  I
Sbjct: 863 SFSKAGRLEKALELHKEMMEVSSSLNITS----KDTYTSLIQALCLASQLEKAFELYSEI 918

Query: 386 LPSCFTPDAVTFTSLIK-ILEINSF 409
                 P+   F  LIK ++++N +
Sbjct: 919 TRKGVVPELSAFICLIKGLIKVNKW 943



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 131/347 (37%), Gaps = 83/347 (23%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   L K         L   ++  G  P+   Y+ LI+ FCK+G++ +   V
Sbjct: 609 PNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEV 668

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R+ +  + P   T+TSLI  +  + R+  A  + +++    C  +V TY  +I+GLCR
Sbjct: 669 FFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCR 728

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    AL L   M          C P+ +TY+++IDGL K                   
Sbjct: 729 IGECQKALKLLSMMEKRG------CNPNVVTYTSLIDGLGKSG----------------- 765

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                         K+ ++ +LF  +   G  PN VTY +LI  
Sbjct: 766 ------------------------------KVDMSLQLFTQMITQGCAPNYVTYRVLINH 795

Query: 328 LCNDGQMDE---------------------------TKHYETVFLLFKRLNSTGLFPDLY 360
            C  G +DE                           +K +     L + L S G+     
Sbjct: 796 CCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMVSIAP 855

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILP---SCFTPDAVTFTSLIKIL 404
            Y +LI+ F K GR+     +   ++    S       T+TSLI+ L
Sbjct: 856 VYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQAL 902



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 131/315 (41%), Gaps = 38/315 (12%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L +   +D  +S   R+      P+  TY  L+  F K  ++     ++  ++     P+
Sbjct: 284 LMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPN 343

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI------- 212
              F SL+   C       A  L  ++   GC      YN  I  +C +G  +       
Sbjct: 344 PSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSIC-SGEELPSPDLLA 402

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A  ++EEM               +  S +++    +  +ANF    C+      +K   
Sbjct: 403 LAEKVYEEM---------------LASSCVLN----KVNTANFA--RCLCGMGKFDKAFQ 441

Query: 273 YFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
              L+  +    +   +  +I  LC+  K++ A  LFQ +   G++P+V TY ILI   C
Sbjct: 442 IIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFC 501

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
             G +++ + +      F  + S G  P + TY  L++ + K  +V     IF R++ + 
Sbjct: 502 KVGLIEQARSW------FDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAG 555

Query: 390 FTPDAVTFTSLIKIL 404
             P+ +T+++L+  L
Sbjct: 556 CAPNTITYSALVDGL 570



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 113/275 (41%), Gaps = 32/275 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   + K +  D  + +  ++  +   P+  TY  +I+  C++G       +
Sbjct: 679 PTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKL 738

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  + +    P+ VT+TSLI  L    ++  +  LFT++   GC  +  TY  LIN  C 
Sbjct: 739 LSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCA 798

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAIT-YSTIIDGLCK----------EAGSANFL 256
            G    A +L  EM            P  +  Y +++ G  K          E  S   +
Sbjct: 799 AGLLDEAHSLLSEMKQ-------TYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMV 851

Query: 257 GFS-----CMASFSALNKMAFYFPLVRVQ---CLCLN------FLCLIDGLCKISKLKIA 302
             +      + SFS   ++     L +        LN      +  LI  LC  S+L+ A
Sbjct: 852 SIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKA 911

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            EL+  + R G++P +  +  LI+GL    + +E 
Sbjct: 912 FELYSEITRKGVVPELSAFICLIKGLIKVNKWNEA 946



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 96/235 (40%), Gaps = 17/235 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  R   P V ++  L   L K+   D  L LF ++   G  P+  TY +LIN  C  G
Sbjct: 741 MMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAG 800

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            +     +L  + ++ +      + S+++      + + +  L  +L   G       Y 
Sbjct: 801 LLDEAHSLLSEMKQTYWPKYVQGYCSVVQGF--SKKFIASLGLLEELESHGMVSIAPVYG 858

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LI+   + G    AL L +EM   +    +  +    TY+++I  LC        L   
Sbjct: 859 LLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKD---TYTSLIQALC--------LASQ 907

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
              +F   +++     +  +      F+CLI GL K++K   A +L  S+   G+
Sbjct: 908 LEKAFELYSEITRKGVVPELSA----FICLIKGLIKVNKWNEALQLCYSMCDEGV 958



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 128/370 (34%), Gaps = 77/370 (20%)

Query: 97  FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY----NILINCFCKMGRVSHGFVVLGRIL 152
           +  LA+  H+D      +RL       DR       N+++   C+ G  +     LGR+ 
Sbjct: 140 YNALAEVLHFDDRARTTERLLREIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGRLK 199

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
              + P   T+ +L++ L    ++     +  ++   G   D FT       LC+ G   
Sbjct: 200 DFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGRWS 259

Query: 213 VALNLFE------------EMANGNGEFGVV--------------CEPDAITYSTIIDGL 246
            AL + E            +M +G  E  +               C P+ +TY T++ G 
Sbjct: 260 DALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGF 319

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            K+      LG+        +N+     P +        F  L+   C       A +L 
Sbjct: 320 LKKKQ----LGWCKRIISMMMNEGCNPNPSL--------FNSLVHSYCNARDYPYAYKLL 367

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDE-------TKHYETV---------------- 343
             +   G  P  V YNI I  +C+  ++          K YE +                
Sbjct: 368 NRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFA 427

Query: 344 ------------FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
                       F + K +   G  PD  TY+ +I   C+  +V   F++F  +      
Sbjct: 428 RCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVI 487

Query: 392 PDAVTFTSLI 401
           PD  T+T LI
Sbjct: 488 PDVYTYTILI 497


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 148/333 (44%), Gaps = 29/333 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+  F  M   R   P   S N L    AK    D V   FK +   G  P  +TYNI
Sbjct: 209 EEAIQCFSKMKRFRVF-PKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNI 267

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+C CK G V     +   +      PD VT+ S+I       R+ +    F +++   
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           CE DV TYN LIN  C+ G   + L  + EM  GNG      +P+ ++YST++D  CKE 
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREM-KGNG-----LKPNVVSYSTLVDAFCKEG 381

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQS 308
                              + FY  + RV  +     +  LID  CKI  L  A  L   
Sbjct: 382 --------------MMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNE 427

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + + G+  NVVTY  LI GLC+  +M E +       LF ++++ G+ P+L +YN LI+ 
Sbjct: 428 MLQVGVEWNVVTYTALIDGLCDAERMKEAEE------LFGKMDTAGVIPNLASYNALIHG 481

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           F K   +     +   +      PD + + + I
Sbjct: 482 FVKAKNMDRALELLNELKGRGIKPDLLLYGTFI 514



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 138/330 (41%), Gaps = 66/330 (20%)

Query: 76  VFDYMLNMRPS-RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           VFD + + R    P    F+ LF  L      +  +  F ++    +FP   + N L++ 
Sbjct: 177 VFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHR 236

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
           F K+G+                T D   F    KD+                   G    
Sbjct: 237 FAKLGK----------------TDDVKRF---FKDMIGA----------------GARPT 261

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           VFTYN +I+ +C+ G    A  LFEEM       G+V  PD +TY+++IDG  K      
Sbjct: 262 VFTYNIMIDCMCKEGDVEAARGLFEEMKFR----GLV--PDTVTYNSMIDGFGK------ 309

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPR 311
                       L+    +F  ++  C     + +  LI+  CK  KL I  E ++ +  
Sbjct: 310 ---------VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKG 360

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL PNVV+Y+ L+   C +G M +   +      +  +   GL P+ YTY  LI+  CK
Sbjct: 361 NGLKPNVVSYSTLVDAFCKEGMMQQAIKF------YVDMRRVGLVPNEYTYTSLIDANCK 414

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           IG +S  F +   +L      + VT+T+LI
Sbjct: 415 IGNLSDAFRLGNEMLQVGVEWNVVTYTALI 444



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 135/313 (43%), Gaps = 23/313 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++  L   L   +       LF +++  G+ P+  +YN LI+ F K   +     +L 
Sbjct: 437 VVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLN 496

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      PD + + + I  LC+  +I  A  +  +++  G + +   Y TL++   ++G
Sbjct: 497 ELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSG 556

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
           +    L+L +EM   + E  VV      T+  +IDGLCK    +  + +         N+
Sbjct: 557 NPTEGLHLLDEMKELDIEVTVV------TFCVLIDGLCKNKLVSKAVDY--------FNR 602

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           ++  F L   Q     F  +IDGLCK ++++ A  LF+ + + GL+P+   Y  L+ G  
Sbjct: 603 ISNDFGL---QANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNF 659

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
             G + E         L  ++   G+  DL  Y  L+       ++         ++   
Sbjct: 660 KQGNVLEA------LALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEG 713

Query: 390 FTPDAVTFTSLIK 402
             PD V   S++K
Sbjct: 714 IHPDEVLCISVLK 726



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 123/292 (42%), Gaps = 36/292 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S+N L     K K+ D  L L   L   G+ PD   Y   I   C + ++    VV
Sbjct: 470 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 529

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +       +++ +T+L+          E   L  +++    E+ V T+  LI+GLC+
Sbjct: 530 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 589

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGS----------- 252
                 A++ F  ++N   +FG+  + +A  ++ +IDGLCK    EA +           
Sbjct: 590 NKLVSKAVDYFNRISN---DFGL--QANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL 644

Query: 253 ------------ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
                        NF   + + + +  +KMA     + ++   L +  L+ GL   ++L+
Sbjct: 645 VPDRTAYTSLMDGNFKQGNVLEALALRDKMA----EIGMKLDLLAYTSLVWGLSHCNQLQ 700

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
            AR   + +   G+ P+ V    +++     G +DE    ++  +  + L S
Sbjct: 701 KARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQLLTS 752


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 153/345 (44%), Gaps = 37/345 (10%)

Query: 68  ITPNEALCVFDYMLNMRP-SRPP-VTSFNILFGCLAKTKH-YDTVLSLFKRLNLTGLFPD 124
           +  N+    F +  NMR    PP V S N+L   L +     D  L +F  +   G  PD
Sbjct: 132 VEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPD 191

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            YTY  LI+  C+ GR+     +   ++     P  VT+TSLI  LC    + EA     
Sbjct: 192 SYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLE 251

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE-EMANGNGEFGVVCEPDAITYSTII 243
           +++  G E +VFTY++L++GLC+ G ++ A+ LFE  MA G       C P+ +TY+T+I
Sbjct: 252 EMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARG-------CRPNMVTYTTLI 304

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
            GLCKE      +      +   L   A  +  V            I G C ISK + A 
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKV------------ISGFCAISKFREAA 352

Query: 304 ELFQSLPRAGLMPNVVTYNI-------LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
                +   G+ PN +T+NI       ++RGLC +       +    F L+  + S G+ 
Sbjct: 353 NFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCAN-------YPSRAFTLYLSMRSRGIS 405

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            ++ T   L+ C CK G       +   I+     P   T+  LI
Sbjct: 406 VEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWKLLI 450



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 134/297 (45%), Gaps = 31/297 (10%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           L +F ++      P +  Y  ++    +  +++  F     +      P   +   LIK 
Sbjct: 106 LRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKA 165

Query: 170 LCAESRIMEAA-ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
           LC     ++A   +F ++   GC+ D +TY TLI+GLCR G    A  LF EM   +   
Sbjct: 166 LCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD--- 222

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN--- 285
              C P  +TY+++I+GLC   GS N            +++   Y   ++ + +  N   
Sbjct: 223 ---CAPTVVTYTSLINGLC---GSKN------------VDEAMRYLEEMKSKGIEPNVFT 264

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  L+DGLCK  +   A ELF+ +   G  PN+VTY  LI GLC + ++ E         
Sbjct: 265 YSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVE------ 318

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           L  R+N  GL PD   Y  +I+ FC I +          ++    TP+ +T+   +K
Sbjct: 319 LLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVK 375



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 113/261 (43%), Gaps = 31/261 (11%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA-LN 216
           P    + +++  L  E+++  A   +  +R  G    V + N LI  LCR   T+ A L 
Sbjct: 119 PSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLK 178

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF-P 275
           +F EM          C+PD+ TY T+I GLC+               F  +++    F  
Sbjct: 179 IFLEMPKRG------CDPDSYTYGTLISGLCR---------------FGRIDEAKKLFTE 217

Query: 276 LVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
           +V   C    + +  LI+GLC    +  A    + +   G+ PNV TY+ L+ GLC DG+
Sbjct: 218 MVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGR 277

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
             +         LF+ + + G  P++ TY  LI   CK  ++     +  R+      PD
Sbjct: 278 SLQAME------LFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPD 331

Query: 394 AVTFTSLIKILEINSFFRQVA 414
           A  +  +I      S FR+ A
Sbjct: 332 AGLYGKVISGFCAISKFREAA 352


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 152/321 (47%), Gaps = 27/321 (8%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P + +FN +   L K    +    +   + + G +P+  TYN LI+ +CKMGRV  
Sbjct: 224 RKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGK 283

Query: 144 GF---VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
            +    +L  ++ +  +P++VTF  LI   C +  +  A  +F +++  G +  V TYN+
Sbjct: 284 MYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNS 343

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           L+NGLC  G    A  L +EM + N       +P+ ITY+ +I+G CK+      L    
Sbjct: 344 LVNGLCNEGKLNEAKVLLDEMLSSN------LKPNVITYNALINGYCKKK-----LLEEA 392

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
              F  + K     P V      + F  L+ G CK  K++ A  L + +   G +PN  T
Sbjct: 393 RELFDNIGKQGLT-PNV------ITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNAST 445

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN LI G C +G+M+E K+      L   +   G+  D  TYNILI+ +C+         
Sbjct: 446 YNCLIVGFCREGKMEEVKN------LLNEMQCRGVKADTVTYNILISAWCEKKEPKKAAR 499

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +   +L     P  +T+  L+
Sbjct: 500 LIDEMLDKGLKPSHLTYNILL 520



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 151/317 (47%), Gaps = 31/317 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V S N L   L K   +  V  ++K +    + P+  T+N +IN  CK+G+++    V+ 
Sbjct: 195 VLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVD 254

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRI---MEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            +    F P+ VT+ +LI   C   R+    +A A+  ++       +  T+N LI+G C
Sbjct: 255 DMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFC 314

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASF 264
           +  +   AL +FEEM +         +P  +TY+++++GLC E     A  L    ++S 
Sbjct: 315 KDENLSAALKVFEEMQSQG------LKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSN 368

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
              N               + +  LI+G CK   L+ ARELF ++ + GL PNV+T+N L
Sbjct: 369 LKPN--------------VITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTL 414

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + G C  G+M+E       FLL K +   G  P+  TYN LI  FC+ G++     +   
Sbjct: 415 LHGYCKFGKMEEA------FLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNE 468

Query: 385 ILPSCFTPDAVTFTSLI 401
           +       D VT+  LI
Sbjct: 469 MQCRGVKADTVTYNILI 485



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 143/310 (46%), Gaps = 24/310 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FN+L     K ++    L +F+ +   GL P   TYN L+N  C  G+++   V+
Sbjct: 301 PNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVL 360

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L S   P+ +T+ +LI   C +  + EA  LF  +   G   +V T+NTL++G C+
Sbjct: 361 LDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCK 420

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  L + M     E G +  P+A TY+ +I G C+E                 L
Sbjct: 421 FGKMEEAFLLQKVML----EKGFL--PNASTYNCLIVGFCREGKMEEVKNL--------L 466

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N+M        V+   + +  LI   C+  + K A  L   +   GL P+ +TYNIL+ G
Sbjct: 467 NEMQCR----GVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNG 522

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C +G +           L K++   G + ++ TYN+LI  +C+ G++     +   +L 
Sbjct: 523 YCMEGNL------RAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLE 576

Query: 388 SCFTPDAVTF 397
               P+  T+
Sbjct: 577 KGLIPNRTTY 586



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 122/295 (41%), Gaps = 60/295 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  + D ML+    +P V ++N L     K K  +    LF  +   GL P+  T+N 
Sbjct: 355 NEAKVLLDEMLSSN-LKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNT 413

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +CK G++   F++   +L   F P+A T+  LI   C E ++ E   L  +++  G
Sbjct: 414 LLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRG 473

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D  TYN LI+  C       A  L +EM +         +P  +TY+ +++G C E 
Sbjct: 474 VKADTVTYNILISAWCEKKEPKKAARLIDEMLDKG------LKPSHLTYNILLNGYCMEG 527

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                                           L+ A  L + + 
Sbjct: 528 N-----------------------------------------------LRAALNLRKQME 540

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           + G   NVVTYN+LI+G C  G++++         L   +   GL P+  TY I+
Sbjct: 541 KEGRWANVVTYNVLIQGYCRKGKLEDANG------LLNEMLEKGLIPNRTTYEII 589


>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Brachypodium distachyon]
          Length = 968

 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 152/319 (47%), Gaps = 29/319 (9%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           S P V ++N +     K   +   + + + +   G+  D YTYNI+I+  CKM R +H +
Sbjct: 255 SLPNVITYNTILHWYVKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAY 314

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           ++L R+      PD  T+ +LIK    ES++M A  +F ++   G +  + TY TLI+G 
Sbjct: 315 LLLKRMRGDNLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGY 374

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           CR G    AL +  EM       GV  +P  +TYS +++G   EA    F  +  M  + 
Sbjct: 375 CRNGTIDEALRVLYEMQVA----GV--KPSEVTYSAMLNGSVHEA----FSVYDNMEKYG 424

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
               +  Y  L+R             GLCK   L  A+E    +       +  T N L+
Sbjct: 425 CSPDVYTYRNLLR-------------GLCKGGHLVQAKEFMSCIVHIPSAIDQKTLNALL 471

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G+CN G +DE         L +++ +    PD++TY IL++ FC+ G++    ++   +
Sbjct: 472 LGICNHGSLDEA------LDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMM 525

Query: 386 LPSCFTPDAVTFTSLIKIL 404
           L     PD VT+T L+K L
Sbjct: 526 LEKGLVPDIVTYTCLLKGL 544



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 143/326 (43%), Gaps = 24/326 (7%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           Y +N     P   S+NIL     K  H    + L+K +   G+ P   TY +LI    K 
Sbjct: 594 YDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKH 653

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G +      L +++     PD ++F  LI     +SR+ +A  LF  ++         TY
Sbjct: 654 GMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTY 713

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           + +INGL R      + ++  +M     E G+  EP    Y  +I+  C+  G  N   F
Sbjct: 714 SAMINGLIRKNWLQHSCDVLRDMV----ESGL--EPKHTHYIALINAKCR-FGDING-AF 765

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                 +AL       P             ++ GL K  K++    +F S+ RAG++P +
Sbjct: 766 RLKEEMTALG----IVPAEVADS------SIVRGLSKCGKVEEGIIVFCSIIRAGMVPTI 815

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
            T+  L+ GLC + ++ +  H +++      + S GL  D+ TYN+LI   CKI  VS  
Sbjct: 816 ATFTTLMHGLCKEAKISDALHLKSL------MESCGLKIDVVTYNVLITGLCKIQCVSDA 869

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKIL 404
             ++  +      P+  T+T+L + +
Sbjct: 870 LELYEEMKSKGLRPNVTTYTTLTEAI 895



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 130/306 (42%), Gaps = 24/306 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   ++ +L   L+K    +  +    ++ L G++PDR ++++LIN F +  R+S    
Sbjct: 637 KPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQ 696

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +     +P + T++++I  L  ++ +  +  +   +   G E     Y  LIN  C
Sbjct: 697 LFNCMKWLYMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALINAKC 756

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G    A  L EEM       G+V  P  +  S+I+ GL K       +   C    + 
Sbjct: 757 RFGDINGAFRLKEEMT----ALGIV--PAEVADSSIVRGLSKCGKVEEGIIVFCSIIRAG 810

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +       P +        F  L+ GLCK +K+  A  L   +   GL  +VVTYN+LI 
Sbjct: 811 M------VPTIAT------FTTLMHGLCKEAKISDALHLKSLMESCGLKIDVVTYNVLIT 858

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC      + +       L++ + S GL P++ TY  L       GR   G  +   I 
Sbjct: 859 GLC------KIQCVSDALELYEEMKSKGLRPNVTTYTTLTEAIYGTGRTLEGEKLLNDIE 912

Query: 387 PSCFTP 392
                P
Sbjct: 913 DRGLVP 918



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 155/380 (40%), Gaps = 79/380 (20%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           PS     + N L   +      D  L L +++      PD +TY IL++ FC+ G++   
Sbjct: 459 PSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPA 518

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL------------------ 186
            ++L  +L     PD VT+T L+K L  E ++  A+ LF ++                  
Sbjct: 519 VILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIAYNSMMN 578

Query: 187 ------RVFGCELDVF------------TYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
                 ++   E+ ++            +YN L++G  + GH   ++ L+++M       
Sbjct: 579 GYLKAGKLHKVEMTIYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKG--- 635

Query: 229 GVVCEPDAITYSTIIDGLCK----------------EAGSANFLGFSCMA-SFSALNKMA 271
               +P  +TY  +I GL K                E    + L F  +  +FS  ++M+
Sbjct: 636 ---IKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMS 692

Query: 272 FYFPLVRVQCLCLNFL----------CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
               L      C+ +L           +I+GL + + L+ + ++ + +  +GL P    Y
Sbjct: 693 DALQLFN----CMKWLYMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHY 748

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
             LI   C  G ++        F L + + + G+ P     + ++    K G+V  G ++
Sbjct: 749 IALINAKCRFGDIN------GAFRLKEEMTALGIVPAEVADSSIVRGLSKCGKVEEGIIV 802

Query: 382 FGRILPSCFTPDAVTFTSLI 401
           F  I+ +   P   TFT+L+
Sbjct: 803 FCSIIRAGMVPTIATFTTLM 822


>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
          Length = 506

 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 169/364 (46%), Gaps = 44/364 (12%)

Query: 42  TVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA 101
           T++DRA        R  S G  D        AL VFD +L  R    P+ S N     +A
Sbjct: 22  TIQDRA--------RVGSGGAED--------ALDVFDELLR-RGIGAPIRSLNGALADVA 64

Query: 102 KTKHYDTVLSLFKRLNLTG---LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           +      V S F R+   G   + P  +TY ILI C C  GR+  GF  LG +++  F  
Sbjct: 65  RDNPAAAV-SRFNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRV 123

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTK-LRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           + + F  L+K LCA+ R  +A  +  + +   GC  +VF++  ++ GLC    +  AL L
Sbjct: 124 EPIIFNPLLKGLCADKRTDDAMDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALEL 183

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
              MA+  G     C P+ ++YST+ DGL K        G     +++   +M     L 
Sbjct: 184 LHMMADDGGG----CLPNVVSYSTVTDGLLK--------GGDPDKAYATYREMLDRRILP 231

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            V    + +  +I  LCK   +  A E+   + + G+ PN  TY  L+ G C+ GQ+ E 
Sbjct: 232 NV----VTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEA 287

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
             +       +++ S G+ P++ TY+  ++  CK GR +    IF  ++     PD  T+
Sbjct: 288 IKF------LEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTY 341

Query: 398 TSLI 401
           +SL+
Sbjct: 342 SSLL 345



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 136/282 (48%), Gaps = 25/282 (8%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G +    P++A   +  ML+ R   P V +++ +   L K +  D  + +  R+   G+
Sbjct: 206 DGLLKGGDPDKAYATYREMLDRR-ILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGV 264

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+ +TY  L++ FC  G+++     L ++  +   P+ VT++S +  LC   R  EA  
Sbjct: 265 TPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARK 324

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +F  +   G + D+ TY++L++G    G  +    LF+ M   +       +PD   ++T
Sbjct: 325 IFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSD------MQPDHYVFNT 378

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISK 298
           +I    K+                 +++    F  +R Q L   C+ +  LI+G CKI++
Sbjct: 379 LIYASAKQG---------------KVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITR 423

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
           ++ A  LFQ +   G+ PN +TYNI+++GL   G+    K +
Sbjct: 424 MENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTGTAKEF 465



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 130/301 (43%), Gaps = 24/301 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++ +   L K    D   + ++ +    + P+  TY+ +I   CK   +     V
Sbjct: 196 PNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEV 255

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R++++  TP+  T+TSL+   C+  ++ EA     K+   G E +V TY++ ++ LC+
Sbjct: 256 HDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCK 315

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  +F  M           +PD  TYS+++ G   E       G   +   S +
Sbjct: 316 NGRCTEARKIFYSMVKRG------LKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDM 369

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
               + F              LI    K  K+  A  +F  +   GL PN VTYN LI G
Sbjct: 370 QPDHYVFN------------TLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLING 417

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C   +M      E    LF+ + S G+ P+  TYNI++    + GR  +    + +I+ 
Sbjct: 418 YCKITRM------ENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTGTAKEFYVQIIK 471

Query: 388 S 388
           S
Sbjct: 472 S 472



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 12/182 (6%)

Query: 51  QFLKERCKSSGEGDITSITP-----------NEALCVFDYMLNMRPSRPPVTSFNILFGC 99
           +FL++ C +  E ++ + +             EA  +F Y +  R  +P +T+++ L   
Sbjct: 289 KFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIF-YSMVKRGLKPDITTYSSLLHG 347

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
            A       +  LF  +  + + PD Y +N LI    K G+V    +V  ++      P+
Sbjct: 348 YAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPN 407

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            VT+ +LI   C  +R+  A ALF ++   G   +  TYN ++ GL RTG T  A   + 
Sbjct: 408 CVTYNTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTGTAKEFYV 467

Query: 220 EM 221
           ++
Sbjct: 468 QI 469



 Score = 46.2 bits (108), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A ++F  L R G+   + + N    G   D   D      + F    R  ++ + P ++T
Sbjct: 37  ALDVFDELLRRGIGAPIRSLN----GALADVARDNPAAAVSRFNRMARAGASMVTPTVHT 92

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           Y ILI C C  GR+  GF   G ++   F  + + F  L+K L
Sbjct: 93  YGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGL 135


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 114/381 (29%), Positives = 172/381 (45%), Gaps = 57/381 (14%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  V   M   R  +P V ++  + G L K       L LF  +   G  P   TYN+L
Sbjct: 133 EATAVLHTMTE-RGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVL 191

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG- 190
           IN  CK G +   F +   +L      + V++ +LI  LC   ++ EA  LF+ L   G 
Sbjct: 192 INGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGN 251

Query: 191 -CELDVFTYNTLINGLCRTGHTIVALNLFEEMAN----GN--------GEF---GVVCE- 233
             E DV T+NT+I GLC+ G    A+ +++ M      GN        GE+   G++ + 
Sbjct: 252 YVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKA 311

Query: 234 -------------PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQ 280
                        P + TYS +IDG CK     + L F+    FS + K++   P +   
Sbjct: 312 MELWKRVHKLGLVPSSTTYSVMIDGFCK----MHMLNFA-KGLFSRM-KISGLSPTL--- 362

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
               ++  L+  LCK S L+ AR LFQ +  +   P+ +++NI+I G    G +   K  
Sbjct: 363 ---FDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKE- 418

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                L   +   GL PD YTY+  IN   K+G++      F  ++ S  TPD   + SL
Sbjct: 419 -----LLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSL 473

Query: 401 IK-------ILEINSFFRQVA 414
           IK       I E+ +  RQ+A
Sbjct: 474 IKGFGLNDEIEEVINLLRQMA 494



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 144/295 (48%), Gaps = 31/295 (10%)

Query: 113 FKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
            KR+N+    PD  +YN +IN  CK  R+     +L  +  S   P++ T+  L+  LC 
Sbjct: 1   MKRINI---LPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCK 57

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           E R+ EA  L  +++  G E+DV  Y+TLI+G C  G       LF+EM     E G+  
Sbjct: 58  EGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEML----EKGI-- 111

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
            P+ + YS +I+G CK+      L     A    + +         +Q     + C+I G
Sbjct: 112 SPNVVVYSCLINGFCKKG-----LWREATAVLHTMTERG-------IQPDVYTYTCMIGG 159

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-DETKHYETVFLLFKRLN 351
           LCK  + + A +LF  +   G  P+ VTYN+LI GLC +G + D  K +ET+    KRL 
Sbjct: 160 LCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRL- 218

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC--FTPDAVTFTSLIKIL 404
                 ++ +YN LI   C  G++     +F  +L       PD +TF ++I+ L
Sbjct: 219 ------EVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGL 267



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 142/302 (47%), Gaps = 26/302 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S+N +   L K K  +  + L   +  +   P+ +TY IL++  CK GRV     +
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG + R     D V +++LI   C++  +    ALF ++   G   +V  Y+ LING C+
Sbjct: 68  LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  +   M     E G+  +PD  TY+ +I GLCK+  +   L       F  +
Sbjct: 128 KGLWREATAVLHTMT----ERGI--QPDVYTYTCMIGGLCKDGRARKALDL-----FDLM 176

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +       V        +  LI+GLCK   +  A ++F+++   G    VV+YN LI G
Sbjct: 177 TEKGEEPSTV-------TYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMG 229

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLF--PDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           LCN+G++DE         LF  L   G +  PD+ T+N +I   CK GR+     I+  +
Sbjct: 230 LCNNGKLDEAMK------LFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTM 283

Query: 386 LP 387
           + 
Sbjct: 284 IE 285



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 25/301 (8%)

Query: 71  NEALCVFDYML-NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +EA+ +F  +L +     P V +FN +   L K    D  + ++  +   G F + +T +
Sbjct: 237 DEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCH 296

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           ILI  + K G +     +  R+ +    P + T++ +I   C    +  A  LF+++++ 
Sbjct: 297 ILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKIS 356

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G    +F YNTL+  LC+      A  LF+EM   N      CEPD I+++ +IDG  K 
Sbjct: 357 GLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESN------CEPDTISFNIMIDGTLK- 409

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
           AG  +    S     + + +M               +   I+ L K+ +++ A+  F S+
Sbjct: 410 AGDIH----SAKELLNDMQQMGLTPD-------AYTYSSFINRLSKLGQMEEAKGAFDSM 458

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             +G+ P+   Y+ LI+G    G  DE    E V  L +++   G+  DL   N ++   
Sbjct: 459 IASGITPDNHVYDSLIKGF---GLNDEI---EEVINLLRQMADMGVILDLEITNSILTFL 512

Query: 370 C 370
           C
Sbjct: 513 C 513



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 55/132 (41%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   SFNI+     K     +   L   +   GL PD YTY+  IN   K+G++     
Sbjct: 394 EPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKG 453

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
               ++ S  TPD   + SLIK       I E   L  ++   G  LD+   N+++  LC
Sbjct: 454 AFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSILTFLC 513

Query: 207 RTGHTIVALNLF 218
            +   +  + L 
Sbjct: 514 NSAEHLHVMELL 525


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 154/316 (48%), Gaps = 25/316 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           +T++NI+   L  +        L K+L N     PD+ T+  LI+  C+ G  +  F +L
Sbjct: 368 ITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEIL 427

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
                S    D  +++S+I   C + R  +A  ++  +   GC+ +   YN LING CR 
Sbjct: 428 EDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRV 487

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                A+ ++ EM + NG     C P  ITY+T+IDGLCK         +   +S +   
Sbjct: 488 SKINDAIKIYIEMTS-NG-----CCPTIITYNTLIDGLCKAEK------YQEASSLTKEM 535

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
               + P +R       +  LI GLC+  K+ +A  ++  +  AGL  +V+ +NILI GL
Sbjct: 536 LERGFKPDIRT------YASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGL 589

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C+ G++DE       F ++  +      P+L TYN L++ F +IG +     ++  IL +
Sbjct: 590 CSAGKVDE------AFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDN 643

Query: 389 CFTPDAVTFTSLIKIL 404
              PD VT+ + IK L
Sbjct: 644 GLKPDIVTYNTRIKGL 659



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 157/364 (43%), Gaps = 49/364 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYN 129
           + AL + D M N       V    +L GC  +T  ++  + ++++L    G  P+  TY 
Sbjct: 210 DNALDLLDEMPNYGVQADAVCYNALLSGCF-RTGMFEKAMKVWEQLVRDPGASPNLATYK 268

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           ++++  CK+GR      V  R++ +    D VT+  LI  LC    +  AA +++ +   
Sbjct: 269 VMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKA 328

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEE--------------MANGNGEFGVV---- 231
           G  LDV  YN+LI G C  G T  A   ++               M  G  + G+V    
Sbjct: 329 GLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEAT 388

Query: 232 -----------CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQ 280
                      C PD +T+ T+I GLC E G AN        +F  L         + V 
Sbjct: 389 ELLKQLENDASCSPDKVTFGTLIHGLC-ENGYAN-------RAFEILEDARNSGEELDV- 439

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
               ++  +I+  CK  +   A E+++++ + G  PN   YN LI G C   ++++    
Sbjct: 440 ---FSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKIND---- 492

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                ++  + S G  P + TYN LI+  CK  +      +   +L   F PD  T+ SL
Sbjct: 493 --AIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASL 550

Query: 401 IKIL 404
           I+ L
Sbjct: 551 IRGL 554



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 153/352 (43%), Gaps = 37/352 (10%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF---- 122
           ++ P+ AL  F  + ++    P V S N L     + + Y    + F  L+  G F    
Sbjct: 96  ALMPDAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLS-HGAFGRRI 154

Query: 123 -PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+  TYNI++   C  G V     +   + R    PD VT+++L+  L    ++  A  
Sbjct: 155 APNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALD 214

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L  ++  +G + D   YN L++G  RTG    A+ ++E++    G       P+  TY  
Sbjct: 215 LLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPG-----ASPNLATYKV 269

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           ++DGLCK            +  F    ++         Q   + +  LI GLC+   +  
Sbjct: 270 MLDGLCK------------LGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDS 317

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL--FPDL 359
           A  ++  + +AGL+ +V  YN LI+G C  G+  E          +K  +STG      +
Sbjct: 318 AARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEA---------WKFWDSTGFSGIRQI 368

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRIL--PSCFTPDAVTFTSLIKILEINSF 409
            TYNI+       G VS    +  ++    SC +PD VTF +LI  L  N +
Sbjct: 369 TTYNIMTKGLLDSGMVSEATELLKQLENDASC-SPDKVTFGTLIHGLCENGY 419



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 151/341 (44%), Gaps = 24/341 (7%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G + S   +EA  +   + N     P   +F  L   L +  + +    + +    +G 
Sbjct: 376 KGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGE 435

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
             D ++Y+ +IN FCK GR      V   +++    P++  + +LI   C  S+I +A  
Sbjct: 436 ELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIK 495

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           ++ ++   GC   + TYNTLI+GLC+      A +L +EM     E G   +PD  TY++
Sbjct: 496 IYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEML----ERGF--KPDIRTYAS 549

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +I GLC++      L        + L          +V  +  N   LI GLC   K+  
Sbjct: 550 LIRGLCRDKKVDVALRIWDEILDAGL----------QVDVMVHNI--LIHGLCSAGKVDE 597

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  ++  +      PN+VTYN L+ G    G +D+     T  L        GL PD+ T
Sbjct: 598 AFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAIL------DNGLKPDIVT 651

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           YN  I   C   R   G ++   +L +   P  +T++ L++
Sbjct: 652 YNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVR 692



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 127/268 (47%), Gaps = 28/268 (10%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
            ++K +   G  P+ + YN LIN FC++ +++    +   +  +   P  +T+ +LI  L
Sbjct: 460 EVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGL 519

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C   +  EA++L  ++   G + D+ TY +LI GLCR     VAL +++E+ +       
Sbjct: 520 CKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAG----- 574

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLC 288
             + D + ++ +I GLC  AG  +                  Y  +    C    + +  
Sbjct: 575 -LQVDVMVHNILIHGLC-SAGKVD-------------EAFCIYLEMKEKNCSPNLVTYNT 619

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+DG  +I  +  A  L+ ++   GL P++VTYN  I+GLC+  +  E        LL  
Sbjct: 620 LMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEG------VLLLN 673

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVS 376
            + +TG+ P + T++IL+    K G + 
Sbjct: 674 EVLATGIMPTVITWSILVRAVIKYGPIQ 701



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 13/181 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  +   ML  R  +P + ++  L   L + K  D  L ++  +   GL  D   +NI
Sbjct: 526 QEASSLTKEMLE-RGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNI 584

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C  G+V   F +   +     +P+ VT+ +L+        I +AA+L+T +   G
Sbjct: 585 LIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNG 644

Query: 191 CELDVFTYNTLINGLC---RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
            + D+ TYNT I GLC   RT   ++ LN  E +A G         P  IT+S ++  + 
Sbjct: 645 LKPDIVTYNTRIKGLCSCNRTPEGVLLLN--EVLATG-------IMPTVITWSILVRAVI 695

Query: 248 K 248
           K
Sbjct: 696 K 696


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 161/348 (46%), Gaps = 37/348 (10%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           V+D ++    +RP + ++N++   L K   +  V  +++R+    L PD  TY ILI+  
Sbjct: 250 VWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGL 309

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G V     V   I+++    DA  + SL+K  C   R+ EA   +      G   ++
Sbjct: 310 CRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NL 368

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            TYN +I GL  +G    A+ L++ +     E  V C PD +T+ T+I GLC+       
Sbjct: 369 RTYNIMIKGLFDSGMVDEAIELWDLL-----EKDVACIPDTVTFGTLIHGLCQN------ 417

Query: 256 LGFSCMASFSALNKMAFYFPLVRV---QCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
            GF+        NK    F   RV   Q    ++  +I+GLC + +L  A ++++ + + 
Sbjct: 418 -GFA--------NKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKD 468

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  PN   YN LI G C      +         ++ ++   G  P + TYN LI+  CK 
Sbjct: 469 GCKPNSHIYNALISGFC------QVYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKA 522

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
            +      +   ++ + FTPD  T+ SLI       KI +  S ++Q+
Sbjct: 523 EKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQI 570



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 150/333 (45%), Gaps = 25/333 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ ++D +       P   +F  L   L +    +   ++F+   ++G   D ++Y+ 
Sbjct: 385 DEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSS 444

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  C +GR+     V  ++ +    P++  + +LI   C   R  +A  +++K+   G
Sbjct: 445 MINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNG 504

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   V TYNTLI+GLC+      A ++  EM   NG       PD  TY ++I GL  + 
Sbjct: 505 CSPTVITYNTLIDGLCKAEKYQEASSVAREMVE-NG-----FTPDITTYGSLIRGLFSDK 558

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL- 309
              + L         ++ K   Y  L +V  +  N   LI GLC   K+  A  +F  + 
Sbjct: 559 KIDDAL---------SIWKQILYKGL-KVDVMMHNI--LIHGLCSAGKVDEALHVFSDMK 606

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            +    PN+VTYN L+ GL   G +D+         L+  +   GL PD+ +YN  I   
Sbjct: 607 EKKNCPPNLVTYNTLMDGLYETGYIDKAA------TLWTSITEDGLEPDIISYNTRIKGL 660

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           C   R+  G  +   +L     P  +T+  L++
Sbjct: 661 CSCDRIHEGIQLLDEVLSRGIIPTVITWNILVR 693



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 149/351 (42%), Gaps = 35/351 (9%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF---- 122
           +I P+ AL  F  + ++    P + S N L     + + +    + F  L+  G F    
Sbjct: 96  AIMPDAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLS-HGAFGRRI 154

Query: 123 -PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+  TYNI++   C  G +     +   + R    PD +T+++L+  L  + R+  A  
Sbjct: 155 APNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALD 214

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L  ++   G + DV  YN L+ G  + G     + +++++    G       P+  TY+ 
Sbjct: 215 LLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPG-----ARPNLATYNV 269

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           ++DGLCK               F  + ++        +Q   + +  LI GLC+   +  
Sbjct: 270 MLDGLCK------------FGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDG 317

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL--FPDL 359
           A  ++  + + GL+ +   YN L++G C  G++ E          +K  +S G     +L
Sbjct: 318 AARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEA---------WKFWDSAGFAGLRNL 368

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCF-TPDAVTFTSLIKILEINSF 409
            TYNI+I      G V     ++  +       PD VTF +LI  L  N F
Sbjct: 369 RTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGF 419



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 137/305 (44%), Gaps = 59/305 (19%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ V++ M +    +P    +N L     +       + ++ ++   G  P   TYN L
Sbjct: 457 DAVKVYEKM-DKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTL 515

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK  +      V   ++ + FTPD  T+ SLI+ L ++ +I +A +++ ++   G 
Sbjct: 516 IDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGL 575

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           ++DV  +N LI+GLC  G    AL++F +M          C P+ +TY+T++DGL +   
Sbjct: 576 KVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKN-----CPPNLVTYNTLMDGLYET-- 628

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                G+                                        +  A  L+ S+  
Sbjct: 629 -----GY----------------------------------------IDKAATLWTSITE 643

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL P++++YN  I+GLC+  ++     +E + LL + L S G+ P + T+NIL+    K
Sbjct: 644 DGLEPDIISYNTRIKGLCSCDRI-----HEGIQLLDEVL-SRGIIPTVITWNILVRAVIK 697

Query: 372 IGRVS 376
            G + 
Sbjct: 698 YGPIQ 702


>gi|255661020|gb|ACU25679.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 376

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 161/328 (49%), Gaps = 28/328 (8%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + L  +     V SFNI+   L      D V+ +++ +  +G   D  TY IL++ FCK 
Sbjct: 48  WELMGKEGSRNVASFNIMMRGLFNNGKVDEVILIWELMKKSGFVEDSITYGILVHGFCKN 107

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G V+    VL          DA  ++++I  LC +S++ +A ++   +   GC+ +   Y
Sbjct: 108 GDVNKSLHVLEIAEMKGGVLDAFAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVY 167

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           N LINGL  +     A+ +F+EM + +      C P  ITY+T+I+GLCK        G 
Sbjct: 168 NALINGLVGSSKFEDAIRVFQEMGSTH------CSPTIITYNTLINGLCK--------GE 213

Query: 259 SCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
               ++  + +M    + P V      + +  LI GLC   K+++A +L+  +   G  P
Sbjct: 214 RFGEAYDLVKEMLEKGWNPCV------ITYSMLIKGLCLCHKVEMALQLWYQVTSKGFKP 267

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           ++  +NILI GLC+ G+M      +    L+  +N     P+L T+N L+  F K G V 
Sbjct: 268 DIQMHNILIHGLCSVGKM------QLALSLYFDMNHWNCAPNLVTHNTLMEGFYKDGDVR 321

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +  VI+ RIL +   PD +++   +K L
Sbjct: 322 NALVIWARILRNGLQPDIISYNITLKGL 349



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 146/326 (44%), Gaps = 25/326 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K    +  L + +   + G   D + Y+ 
Sbjct: 76  DEVILIWELMKKSGFVEDSIT-YGILVHGFCKNGDVNKSLHVLEIAEMKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK  ++     VL  +++S   P+A  + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGSSKFEDAIRVFQEMGSTH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A +L +EM     E G    P  ITYS +I GLC   
Sbjct: 195 CSPTIITYNTLINGLCKGERFGEAYDLVKEML----EKG--WNPCVITYSMLIKGLC--- 245

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              + +  +    +   +K   + P +++  +      LI GLC + K+++A  L+  + 
Sbjct: 246 -LCHKVEMALQLWYQVTSK--GFKPDIQMHNI------LIHGLCSVGKMQLALSLYFDMN 296

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
                PN+VT+N L+ G   DG +          +++ R+   GL PD+ +YNI +   C
Sbjct: 297 HWNCAPNLVTHNTLMEGFYKDGDV------RNALVIWARILRNGLQPDIISYNITLKGLC 350

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVT 396
              R+S   +     L     P  +T
Sbjct: 351 SCNRISGAILFLHDALTKKIVPTIIT 376



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/242 (19%), Positives = 86/242 (35%), Gaps = 60/242 (24%)

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C    I  A  ++  +      LD   YNT++NG  R G       L+E M         
Sbjct: 1   CESGDIDGAEMVYKDIVESKLSLDAVVYNTMLNGFFRVGRIKDCFELWELMG-------- 52

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
                             + GS N   F+ M                            +
Sbjct: 53  ------------------KEGSRNVASFNIM----------------------------M 66

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
            GL    K+     +++ + ++G + + +TY IL+ G C +G ++++ H      + +  
Sbjct: 67  RGLFNNGKVDEVILIWELMKKSGFVEDSITYGILVHGFCKNGDVNKSLH------VLEIA 120

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFF 410
              G   D + Y+ +IN  CK  ++     +   ++ S   P+A  + +LI  L  +S F
Sbjct: 121 EMKGGVLDAFAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGSSKF 180

Query: 411 RQ 412
             
Sbjct: 181 ED 182


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 144/299 (48%), Gaps = 32/299 (10%)

Query: 109 VLSLFKRLNLT---GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           VL   K LN     G   D  T  ++I+ FC+ G V+       +++     P+ + FT+
Sbjct: 240 VLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTA 299

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
           LI  LC +  I +A  L  ++   G + +V+T+ TLI+GLC+ G T  A  LF ++   +
Sbjct: 300 LINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSD 359

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN 285
           G      +P+  TY+ +I+G CKE                 LN+       ++ Q L  N
Sbjct: 360 GY-----KPNVHTYTAMINGYCKE---------------DKLNRAEMLLSRMQEQGLVPN 399

Query: 286 ---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
              +  LIDG CK+     A EL   + + G  PN+ TYN +I GLC  G +DE      
Sbjct: 400 TNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEA----- 454

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + L  +++  GL  D  TY IL++  C+    +   V F ++L   FTPD  ++T+LI
Sbjct: 455 -YRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLI 512



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 147/315 (46%), Gaps = 25/315 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F  L   L K         L + +   G  P+ YT+  LI+  CK G     F +
Sbjct: 292 PNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRL 351

Query: 148 LGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
             +++RS  + P+  T+T++I   C E ++  A  L ++++  G   +  TY TLI+G C
Sbjct: 352 FLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHC 411

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G+ + A  L + M    G+ G    P+  TY+ IIDGLCK+         S   ++  
Sbjct: 412 KVGNFVRAYELMDLM----GKEGF--SPNIYTYNAIIDGLCKKG--------SLDEAYRL 457

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           LNK++ +     +Q   + +  L+   C+ +    +   F  + + G  P++ +Y  LI 
Sbjct: 458 LNKVSVH----GLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLIS 513

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             C   QM E++       LF+   S GL P   TY  +I  +C+ G  S    +F R+ 
Sbjct: 514 XFCRQKQMKESER------LFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMS 567

Query: 387 PSCFTPDAVTFTSLI 401
                PD++T+ +LI
Sbjct: 568 NHGCAPDSITYGALI 582



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 142/318 (44%), Gaps = 25/318 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVS 142
           R  +P V +   L   L K    +    LF +L    G  P+ +TY  +IN +CK  +++
Sbjct: 323 RGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLN 382

Query: 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
              ++L R+      P+  T+T+LI   C     + A  L   +   G   +++TYN +I
Sbjct: 383 RAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAII 442

Query: 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA 262
           +GLC+ G    A  L  +++          + D +TY+ ++   C++A +   L F    
Sbjct: 443 DGLCKKGSLDEAYRLLNKVSVHG------LQADGVTYTILMSVHCRQADTNRSLVF---- 492

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
            F+ + K+ F  P +       ++  LI   C+  ++K +  LF+     GL+P   TY 
Sbjct: 493 -FNKMLKVGFT-PDIH------SYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYT 544

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            +I G C  G             LF+R+++ G  PD  TY  LI+  CK  ++     ++
Sbjct: 545 SMICGYCRYGNTS------LAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLY 598

Query: 383 GRILPSCFTPDAVTFTSL 400
             ++    +P  VT  +L
Sbjct: 599 DAMMDKGLSPCEVTRLTL 616



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 130/299 (43%), Gaps = 24/299 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++  +     K    +    L  R+   GL P+  TY  LI+  CK+G     + 
Sbjct: 362 KPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYE 421

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  + +  F+P+  T+ ++I  LC +  + EA  L  K+ V G + D  TY  L++  C
Sbjct: 422 LMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHC 481

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R   T  +L  F +M        V   PD  +Y+T+I   C++           M     
Sbjct: 482 RQADTNRSLVFFNKM------LKVGFTPDIHSYTTLISXFCRQKQ---------MKESER 526

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L + A    L+  +    + +C   G C+     +A +LFQ +   G  P+ +TY  LI 
Sbjct: 527 LFEEAVSLGLIPTKKTYTSMIC---GYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALIS 583

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           GLC + ++D+ ++      L+  +   GL P   T   L   +CK    S+   +  R+
Sbjct: 584 GLCKESKLDDARN------LYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRL 636



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 112/280 (40%), Gaps = 85/280 (30%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N +   L K    D    L  ++++ GL  D  TY IL++  C+    +   V 
Sbjct: 433 PNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVF 492

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++L+  FTPD  ++T+LI   C + ++ E+  LF +    G      TY ++I G CR
Sbjct: 493 FNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCR 552

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+T +A+ LF+ M+N        C PD+ITY                            
Sbjct: 553 YGNTSLAVKLFQRMSNHG------CAPDSITYGA-------------------------- 580

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP----------- 316
                                LI GLCK SKL  AR L+ ++   GL P           
Sbjct: 581 ---------------------LISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYE 619

Query: 317 -----------NVV----------TYNILIRGLCNDGQMD 335
                      NV+          T N L+R LC++G++D
Sbjct: 620 YCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLD 659



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 33/183 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N +L  F+ ML +  + P + S+  L     + K       LF+     GL P + TY  
Sbjct: 487 NRSLVFFNKMLKVGFT-PDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTS 545

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I  +C+ G  S    +  R+      PD++T+ +LI  LC ES++ +A  L+  +   G
Sbjct: 546 MICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKG 605

Query: 191 ---------------CELD-----------------VFTYNTLINGLCRTGHTIVALNLF 218
                          C+ D                 + T NTL+  LC  G   +A   F
Sbjct: 606 LSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALFF 665

Query: 219 EEM 221
            ++
Sbjct: 666 HKL 668


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 154/337 (45%), Gaps = 37/337 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVL---------SLFKRLNLTGLFPDRYTYNILINCFCKM 138
           P + +FNI    L +    D  +            +++   G  PD  TYN +I+ +CK 
Sbjct: 249 PNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKK 308

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G V     VL   +   F PD  T+ SLI   C +     A A+F      G    +  Y
Sbjct: 309 GMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLY 368

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           NTLI GL + G  + AL L  EMA  NG     C P+  TY+ +I+GLCK       +G 
Sbjct: 369 NTLIKGLSQQGLILPALQLMNEMAE-NG-----CLPNIWTYNLVINGLCK-------MGC 415

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
              AS    + +A   P          +  LIDG CK  KL  A E+   +   G+ P+V
Sbjct: 416 VSDASHLVDDAIAKGCPPD-----IFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDV 470

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           +TYN L+ GLC  G+ +E      V  +FK +   G  P++ TYNI+++  CK  +V+  
Sbjct: 471 ITYNTLLNGLCKAGKSEE------VMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEA 524

Query: 379 FVIFGRILPSCFTPDAVTFTSLI----KILEINSFFR 411
             + G +      PD V+F +L     KI +I+  ++
Sbjct: 525 VDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQ 561



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 152/337 (45%), Gaps = 28/337 (8%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P+ A+ VF   L  +  RP +  +N L   L++       L L   +   G  P+ +TYN
Sbjct: 346 PDRAMAVFKDGLG-KGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYN 404

Query: 130 ILINCFCKMGRVSHG-FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           ++IN  CKMG VS    +V   I + C  PD  T+ +LI   C + ++  A  +  ++  
Sbjct: 405 LVINGLCKMGCVSDASHLVDDAIAKGC-PPDIFTYNTLIDGYCKQLKLDSATEMVNRMWS 463

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   DV TYNTL+NGLC+ G +   + +F+ M          C P+ ITY+ I+D LCK
Sbjct: 464 QGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKG------CTPNIITYNIIVDSLCK 517

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                  +          L       P V      ++F  L  G CKI  +  A +LF+ 
Sbjct: 518 AKKVNEAVDLLGEMKSKGLK------PDV------VSFGTLFTGFCKIGDIDGAYQLFRR 565

Query: 309 LPRA-GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           + +   +     TYNI++        M+          LF  + ++G  PD YTY ++I+
Sbjct: 566 MEKQYDVCHTTATYNIIVSAFSEQLNMN------MAMKLFSVMKNSGCDPDNYTYRVVID 619

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            FCK+G ++ G+      +   F P   TF  ++  L
Sbjct: 620 GFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCL 656



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 139/300 (46%), Gaps = 26/300 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   ++N +     K         + K     G  PD +TY  LIN FCK G       
Sbjct: 292 EPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMA 351

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V    L     P  V + +LIK L  +  I+ A  L  ++   GC  +++TYN +INGLC
Sbjct: 352 VFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLC 411

Query: 207 RTGHTIVALNLFEE-MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           + G    A +L ++ +A G       C PD  TY+T+IDG CK+            ++  
Sbjct: 412 KMGCVSDASHLVDDAIAKG-------CPPDIFTYNTLIDGYCKQ--------LKLDSATE 456

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            +N+M        V    + +  L++GLCK  K +   E+F+++   G  PN++TYNI++
Sbjct: 457 MVNRMWSQGMTPDV----ITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIV 512

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
             LC   +++E         L   + S GL PD+ ++  L   FCKIG +   + +F R+
Sbjct: 513 DSLCKAKKVNEAVD------LLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRM 566



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 160/407 (39%), Gaps = 92/407 (22%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+  F+ M +     P V S N +   L +  +++    ++ R+   G+  D YTY I
Sbjct: 93  QEAVDTFERM-DFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTI 151

Query: 131 LINCFCKMGR--------------------VSHGFVVLG---------------RILRSC 155
            I  FCK  R                    V++  VV G                +L  C
Sbjct: 152 RIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARC 211

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG------ 209
             PD V F  L+  LC +  + E+  L  K+   G   ++FT+N  + GLCR G      
Sbjct: 212 LCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAV 271

Query: 210 ---HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                + A     +M NG        EPD +TY++IIDG CK+    +       A F  
Sbjct: 272 RNSRVVEAEEYLRKMVNGG------FEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKG 325

Query: 267 LNKMAFYFPLVRVQCLCLNFLC-----------------------------LIDGLCKIS 297
                F +      C  +N  C                             LI GL +  
Sbjct: 326 FKPDEFTY------CSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQG 379

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
            +  A +L   +   G +PN+ TYN++I GLC  G + +  H      L     + G  P
Sbjct: 380 LILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASH------LVDDAIAKGCPP 433

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           D++TYN LI+ +CK  ++ S   +  R+     TPD +T+ +L+  L
Sbjct: 434 DIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGL 480



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 132/309 (42%), Gaps = 23/309 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N++   L K         L       G  PD +TYN LI+ +CK  ++     +
Sbjct: 398 PNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEM 457

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + R+     TPD +T+ +L+  LC   +  E   +F  +   GC  ++ TYN +++ LC+
Sbjct: 458 VNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCK 517

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A++L  EM +         +PD +++ T+  G CK  G  +        ++   
Sbjct: 518 AKKVNEAVDLLGEMKSKG------LKPDVVSFGTLFTGFCK-IGDID-------GAYQLF 563

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +M   + +         +  ++    +   + +A +LF  +  +G  P+  TY ++I G
Sbjct: 564 RRMEKQYDVCHTTA---TYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDG 620

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  G +  T+ Y+  FLL          P L T+  ++NC C   +V     I   +L 
Sbjct: 621 FCKMGNI--TQGYK--FLLENM--EKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQ 674

Query: 388 SCFTPDAVT 396
               P+ V 
Sbjct: 675 KGIVPETVN 683


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 169/355 (47%), Gaps = 36/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD M+  R  +P V ++ +L   L +    +    + +++   G+FP   TYN 
Sbjct: 318 DKAFNLFDEMI-ARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNA 376

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN +CK GRV   F +L  + +    P+  TF  L++ LC   +  +A  L  ++   G
Sbjct: 377 LINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNG 436

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ +YN LI+GLCR GH  VA  L   M + +       EPD +T++ II+  CK+ 
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFD------LEPDCLTFTAIINAFCKQG 490

Query: 251 G---SANFLGFSCMASFS----------------ALNKMAFYF--PLVRVQCLCL--NFL 287
               ++ FLG       S                   + A +    LV+++ L    +  
Sbjct: 491 KADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLN 550

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            ++D L K  KLK    +   + + GL+P+VVTY  L+ GL   G +  +      F + 
Sbjct: 551 VILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGS------FRML 604

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + +  +G  P++Y Y I+IN  C+ GRV     +   +  S  +P+ VT+T ++K
Sbjct: 605 ELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVK 659



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 165/347 (47%), Gaps = 29/347 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  + D M   +  +P   ++ +L   L      D   +LF  +   G  P+ +TY +
Sbjct: 283 EEAFGLKDQM-GEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTV 341

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C+ G++     V  ++++    P  +T+ +LI   C + R++ A  L T +    
Sbjct: 342 LIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRA 401

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+ +V T+N L+ GLCR G    A++L + M + NG       PD ++Y+ +IDGLC+E 
Sbjct: 402 CKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLD-NG-----LSPDIVSYNVLIDGLCRE- 454

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G  N + +  + S ++ +          ++  CL F  +I+  CK  K  +A      + 
Sbjct: 455 GHMN-VAYKLLTSMNSFD----------LEPDCLTFTAIINAFCKQGKADVASAFLGLML 503

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R G+  + VT   LI G+CN G     K  + +F+L + L    +    ++ N++++   
Sbjct: 504 RKGISLDEVTGTTLIDGVCNVG-----KTRDALFIL-ETLVKMRMLTTPHSLNVILDMLS 557

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL----EINSFFRQV 413
           K  ++     + G+I      P  VT+T+L+  L    +I+  FR +
Sbjct: 558 KGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRML 604



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 148/349 (42%), Gaps = 73/349 (20%)

Query: 113 FKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF---------------- 156
           ++R+   G       Y  ++N  CK G      + + +IL+  F                
Sbjct: 183 YRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCR 242

Query: 157 --------------------TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
                                P++V+++ LI  LC   R+ EA  L  ++   GC+    
Sbjct: 243 GLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTR 302

Query: 197 TYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           TY  LI  LC  G    A NLF+EM A G       C+P+  TY+ +IDGLC++      
Sbjct: 303 TYTVLIKALCDRGLIDKAFNLFDEMIARG-------CKPNVHTYTVLIDGLCRDGKIEEA 355

Query: 256 LG----------FSCMASFSAL-------NKMAFYFPLVRV------QCLCLNFLCLIDG 292
            G          F  + +++AL        ++   F L+ V      +     F  L++G
Sbjct: 356 NGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEG 415

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LC++ K   A  L + +   GL P++V+YN+LI GLC +G M+        + L   +NS
Sbjct: 416 LCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMN------VAYKLLTSMNS 469

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             L PD  T+  +IN FCK G+        G +L    + D VT T+LI
Sbjct: 470 FDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLI 518



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 124/303 (40%), Gaps = 23/303 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL + + ++ MR    P  S N++   L+K       L++  ++N  GL P   TY  L
Sbjct: 529 DALFILETLVKMRMLTTP-HSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTL 587

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++   + G +S  F +L  +  S   P+   +T +I  LC   R+ EA  L + ++  G 
Sbjct: 588 VDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGV 647

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  TY  ++ G    G    AL     M     E       D I YS+++ G      
Sbjct: 648 SPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELN-----DRI-YSSLLRGFVLSQK 701

Query: 252 SANFLGFSCMASF-SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                   C+    S + ++           LC   + L+  LCK  +   +  L Q++ 
Sbjct: 702 GIRETDPECIKELISVVEQLGG-----STSGLC---IFLVTRLCKEGRTDESNGLVQTIL 753

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           ++G+       +I++   C+  +   TK  E + L+ K    +G  P   ++ ++I    
Sbjct: 754 KSGVFLEKAI-DIIMESYCS--KKKHTKCVELITLVLK----SGFVPSFKSFCLVIQGLK 806

Query: 371 KIG 373
           K G
Sbjct: 807 KEG 809



 Score = 38.1 bits (87), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 12/149 (8%)

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           LGF    ++  +    F   ++       ++  +++ LCK    + A      + + G +
Sbjct: 175 LGFLAYVTYRRMEADGFVVGMI-------DYRTIVNALCKNGYTEAAEMFMCKILKVGFL 227

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +      L+ G C    + +      VF L  R  +    P+  +Y+ILI+  C++GR+
Sbjct: 228 LDSHIVTSLLLGFCRGLNLRDALK---VFDLMSREGTCA--PNSVSYSILIHGLCEVGRL 282

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              F +  ++      P   T+T LIK L
Sbjct: 283 EEAFGLKDQMGEKGCQPSTRTYTVLIKAL 311


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 144/296 (48%), Gaps = 34/296 (11%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G   D  T  ++I+ FC+ G V+       +++     P+ + FT+LI  LC +  I +A
Sbjct: 254 GFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQA 313

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L  ++   G + +V+T+ TLI+GLC+ G T  A  LF ++   +G      +P+  TY
Sbjct: 314 FELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGY-----KPNVHTY 368

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKI 296
           + +I+G CKE                 LN+       ++ Q L  N   +  LIDG CK+
Sbjct: 369 TAMINGYCKE---------------DKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKV 413

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
                A EL   + + G  PN+ TYN +I GLC  G +DE       + L  +++  GL 
Sbjct: 414 GNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEA------YRLLNKVSVHGLQ 467

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            D  TY IL++  C+    +   V F ++L   FTPD  ++T+L     I++F RQ
Sbjct: 468 ADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTL-----ISTFCRQ 518



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 147/315 (46%), Gaps = 25/315 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F  L   L K         L + +   G  P+ YT+  LI+  CK G     F +
Sbjct: 292 PNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRL 351

Query: 148 LGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
             +++RS  + P+  T+T++I   C E ++  A  L ++++  G   +  TY TLI+G C
Sbjct: 352 FLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHC 411

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G+ + A  L + M    G+ G    P+  TY+ IIDGLCK+         S   ++  
Sbjct: 412 KVGNFVRAYELMDLM----GKEGF--SPNIYTYNAIIDGLCKKG--------SLDEAYRL 457

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           LNK++ +     +Q   + +  L+   C+ +    +   F  + + G  P++ +Y  LI 
Sbjct: 458 LNKVSVH----GLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLIS 513

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             C   QM E++       LF+   S GL P   TY  +I  +C+ G  S    +F R+ 
Sbjct: 514 TFCRQKQMKESER------LFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMS 567

Query: 387 PSCFTPDAVTFTSLI 401
                PD++T+ +LI
Sbjct: 568 NHGCAPDSITYGALI 582



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 142/318 (44%), Gaps = 25/318 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVS 142
           R  +P V +   L   L K    +    LF +L    G  P+ +TY  +IN +CK  +++
Sbjct: 323 RGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLN 382

Query: 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
              ++L R+      P+  T+T+LI   C     + A  L   +   G   +++TYN +I
Sbjct: 383 RAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAII 442

Query: 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA 262
           +GLC+ G    A  L  +++          + D +TY+ ++   C++A +   L F    
Sbjct: 443 DGLCKKGSLDEAYRLLNKVSVHG------LQADGVTYTILMSVHCRQADTNRSLVF---- 492

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
            F+ + K+ F  P +       ++  LI   C+  ++K +  LF+     GL+P   TY 
Sbjct: 493 -FNKMLKVGFT-PDIH------SYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYT 544

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            +I G C  G             LF+R+++ G  PD  TY  LI+  CK  ++     ++
Sbjct: 545 SMICGYCRYGNTS------LAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLY 598

Query: 383 GRILPSCFTPDAVTFTSL 400
             ++    +P  VT  +L
Sbjct: 599 DAMMDKGLSPCEVTRLTL 616



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 130/299 (43%), Gaps = 24/299 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++  +     K    +    L  R+   GL P+  TY  LI+  CK+G     + 
Sbjct: 362 KPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYE 421

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  + +  F+P+  T+ ++I  LC +  + EA  L  K+ V G + D  TY  L++  C
Sbjct: 422 LMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHC 481

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R   T  +L  F +M        V   PD  +Y+T+I   C++           M     
Sbjct: 482 RQADTNRSLVFFNKM------LKVGFTPDIHSYTTLISTFCRQKQ---------MKESER 526

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L + A    L+  +    + +C   G C+     +A +LFQ +   G  P+ +TY  LI 
Sbjct: 527 LFEEAVSLGLIPTKKTYTSMIC---GYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALIS 583

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           GLC + ++D+ ++      L+  +   GL P   T   L   +CK    S+   +  R+
Sbjct: 584 GLCKESKLDDARN------LYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRL 636



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 112/280 (40%), Gaps = 85/280 (30%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N +   L K    D    L  ++++ GL  D  TY IL++  C+    +   V 
Sbjct: 433 PNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVF 492

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++L+  FTPD  ++T+LI   C + ++ E+  LF +    G      TY ++I G CR
Sbjct: 493 FNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCR 552

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+T +A+ LF+ M+N        C PD+ITY                            
Sbjct: 553 YGNTSLAVKLFQRMSNHG------CAPDSITYGA-------------------------- 580

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP----------- 316
                                LI GLCK SKL  AR L+ ++   GL P           
Sbjct: 581 ---------------------LISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYE 619

Query: 317 -----------NVV----------TYNILIRGLCNDGQMD 335
                      NV+          T N L+R LC++G++D
Sbjct: 620 YCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLD 659



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 33/183 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N +L  F+ ML +  + P + S+  L     + K       LF+     GL P + TY  
Sbjct: 487 NRSLVFFNKMLKVGFT-PDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTS 545

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I  +C+ G  S    +  R+      PD++T+ +LI  LC ES++ +A  L+  +   G
Sbjct: 546 MICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKG 605

Query: 191 ---------------CELD-----------------VFTYNTLINGLCRTGHTIVALNLF 218
                          C+ D                 + T NTL+  LC  G   +A   F
Sbjct: 606 LSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAALFF 665

Query: 219 EEM 221
            ++
Sbjct: 666 HKL 668


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 155/321 (48%), Gaps = 24/321 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  +P V ++  +   L K         LFK++   G  PD  TY+ +I+  CK  RV+ 
Sbjct: 4   RGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNE 63

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   +     +P+  T+ SLI+ LC  SR  EA+A+  ++       ++ T++ LIN
Sbjct: 64  ALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLIN 123

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
             C+ G+   A  + + M     E GV  EP+ +TYS++++            G+S  A 
Sbjct: 124 IFCKEGNVFEARGVLKTMT----EMGV--EPNVVTYSSLMN------------GYSLQAE 165

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
                K+         +    ++  LI+G CK  ++  A++LF  +   GL P++V+YN 
Sbjct: 166 VFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNT 225

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GLC  G++ E         LFK + + G  PDL TY+IL++ FCK G ++  F +F 
Sbjct: 226 LIDGLCQLGRLREAHD------LFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFR 279

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +  +   P+ V +  LI  +
Sbjct: 280 AMQSTYLKPNMVMYNILIDAM 300



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 144/309 (46%), Gaps = 28/309 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V +++ +   L K +  +  L +F  +   G+ P+ +TYN LI   C   R      
Sbjct: 42  QPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASA 101

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++     P+ VTF+ LI   C E  + EA  +   +   G E +V TY++L+NG  
Sbjct: 102 MLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYS 161

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASF 264
                  A  LF+ M          C+PD  +Y+ +I+G CK    G A  L       F
Sbjct: 162 LQAEVFEARKLFDVMITKG------CKPDVFSYNILINGYCKAKRIGEAKQL-------F 208

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           + +        +V       ++  LIDGLC++ +L+ A +LF+++   G +P++ TY+IL
Sbjct: 209 NEMIHQGLTPDIV-------SYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSIL 261

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + G C  G      +    F LF+ + ST L P++  YNILI+  CK   +     +F  
Sbjct: 262 LDGFCKQG------YLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSE 315

Query: 385 ILPSCFTPD 393
           +      P+
Sbjct: 316 LFVQGLQPN 324


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 160/341 (46%), Gaps = 36/341 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLS-LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           P V S+N +   + +TK    +   +FK +  +G+ P+ YTYNILI  FC  G +  G  
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLX 224

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
             G + R+   P+ VT+ ++I   C   +I EA  L   + + G   ++ +YN +INGLC
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLC 284

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----------------KEA 250
           R G       + EEM+           PD +T++T+I+G C                K  
Sbjct: 285 REGQMKETSEILEEMSKRR------YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338

Query: 251 GSANFLGFS----CMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIAR 303
            S N + ++     M     LN+   +   +R + L  N   +  LIDG  +   LK A 
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAY 398

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           ++ + +   G  P ++TYN LI G C  G+M++         L + +   G  PD+ +Y+
Sbjct: 399 QIMKEMVENGFTPTIITYNALINGHCILGRMEDASG------LLQEMIERGFIPDVVSYS 452

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +I+ FC+   +   F +   ++    +PD  T++SLI+ L
Sbjct: 453 TIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGL 493



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 152/316 (48%), Gaps = 28/316 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +     K +       L + + L GL P+  +YN++IN  C+ G++     +
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEI 295

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  + +  + PD VTF +LI   C      +A  L  ++   G   +V TY TLIN +C+
Sbjct: 296 LEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCK 355

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+   A+   ++M +          P+  TY+T+IDG  ++       GF   A +  +
Sbjct: 356 AGNLNRAMEFLDQMRDRG------LHPNGRTYTTLIDGFSQQ-------GFLKQA-YQIM 401

Query: 268 NKMAF--YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            +M    + P +      + +  LI+G C + +++ A  L Q +   G +P+VV+Y+ +I
Sbjct: 402 KEMVENGFTPTI------ITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTII 455

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C + ++      E  F L   + + G+ PD+ TY+ LI   CK  R+     +F  +
Sbjct: 456 SGFCRNQEL------EKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEM 509

Query: 386 LPSCFTPDAVTFTSLI 401
           L     PD VT+TSLI
Sbjct: 510 LSLGLPPDEVTYTSLI 525



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 158/335 (47%), Gaps = 33/335 (9%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++ ++   P + S+N++   L +         + + ++     PDR T+N LIN +C +G
Sbjct: 263 LMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVG 322

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
                 V+   ++++  +P+ VT+T+LI  +C    +  A     ++R  G   +  TY 
Sbjct: 323 NFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYT 382

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TLI+G  + G    A  + +EM   NG       P  ITY+ +I+G C        LG  
Sbjct: 383 TLIDGFSQQGFLKQAYQIMKEMVE-NG-----FTPTIITYNALINGHC-------ILGRM 429

Query: 260 CMASFSALNKMAF--YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
             AS   L +M    + P V      +++  +I G C+  +L+ A +L   +   G+ P+
Sbjct: 430 EDAS-GLLQEMIERGFIPDV------VSYSTIISGFCRNQELEKAFQLKVEMVAKGISPD 482

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           V TY+ LI+GLC   ++ E      V  LF+ + S GL PD  TY  LIN +C  G +  
Sbjct: 483 VATYSSLIQGLCKQRRLGE------VCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDK 536

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
              +   ++   F+PD VT+  L     IN F +Q
Sbjct: 537 ALRLHDEMIQKGFSPDIVTYNVL-----INGFNKQ 566



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 150/357 (42%), Gaps = 54/357 (15%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   + K  + +  +    ++   GL P+  TY  LI+ F + G +   + +
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  ++ + FTP  +T+ +LI   C   R+ +A+ L  ++   G   DV +Y+T+I+G CR
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFS 265
                 A  L  EM A G         PD  TYS++I GLCK+         F  M S  
Sbjct: 461 NQELEKAFQLKVEMVAKG-------ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513

Query: 266 ALNKMAFYFPLVRVQCL----------------------CLNFLCLIDGLCKISKLKIAR 303
                  Y  L+   C+                       + +  LI+G  K S+ K A+
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAK 573

Query: 304 ELFQSLPRAGLMPNVVTYNILI---------------RGLCNDGQMDETKHY-ETVFLLF 347
            L   L     +PN +TYN LI               +G C  G M+E     E++    
Sbjct: 574 RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +LN          YN++I+   K+G +   + ++  +L S F P +VT  +L K L
Sbjct: 634 YKLNEE-------VYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSL 683



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 122/265 (46%), Gaps = 37/265 (13%)

Query: 156 FTPDAVTFTSLIKDLC-AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA 214
           F P  +++ +++  +   +  +  A  +F ++   G   +V+TYN LI G C  G+  + 
Sbjct: 163 FMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMG 222

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
           L  F EM   NG     C P+ +TY+TIID  CK                  L K+   F
Sbjct: 223 LXFFGEMER-NG-----CLPNVVTYNTIIDAYCK------------------LRKIGEAF 258

Query: 275 PLVRVQCL------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
            L+R+  L       +++  +I+GLC+  ++K   E+ + + +   +P+ VT+N LI G 
Sbjct: 259 KLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGY 318

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           CN G      ++    +L   +   GL P++ TY  LIN  CK G ++       ++   
Sbjct: 319 CNVG------NFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR 372

Query: 389 CFTPDAVTFTSLIKILEINSFFRQV 413
              P+  T+T+LI       F +Q 
Sbjct: 373 GLHPNGRTYTTLIDGFSQQGFLKQA 397



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 119/321 (37%), Gaps = 54/321 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++ +     + +  +    L   +   G+ PD  TY+ LI   CK  R+     +
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L     PD VT+TSLI   C E  + +A  L  ++   G   D+ TYN LING  +
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNK 565

Query: 208 TGHTIVALN-----LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA 262
              T  A       L+EE             P+ ITY+T+ID       + N L F    
Sbjct: 566 QSRTKEAKRLLLKLLYEESV-----------PNEITYNTLID-------NCNNLEFKSA- 606

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
                                   L L+ G C    +  A  + +S+ + G   N   YN
Sbjct: 607 ------------------------LALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYN 642

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           ++I G    G +      E  + L+K +  +G  P   T   L       G+      + 
Sbjct: 643 VIIHGHSKVGNI------EKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLL 696

Query: 383 GRILPSCFTPDAVTFTSLIKI 403
              L SC   +A     LI I
Sbjct: 697 DYTLKSCRITEAALAKVLIGI 717


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 169/364 (46%), Gaps = 44/364 (12%)

Query: 42  TVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA 101
           T++DRA        R  S G  D        AL VFD +L  R    P+ S N     +A
Sbjct: 22  TIQDRA--------RVGSGGAED--------ALDVFDELLR-RGIGAPIRSLNGALADVA 64

Query: 102 KTKHYDTVLSLFKRLNLTG---LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           +      V S F R+   G   + P  +TY ILI C C  GR+  GF  LG +++  F  
Sbjct: 65  RDNPAAAV-SRFNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRV 123

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTK-LRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           + + F  L+K LCA+ R  +A  +  + +    C  +VF++  ++ GLC    +  AL L
Sbjct: 124 EPIIFNPLLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALEL 183

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
              MA+  G     C P+ ++YST+IDGL K        G     +++   +M     L 
Sbjct: 184 LHMMADDGGG----CLPNVVSYSTVIDGLLK--------GGDPDKAYATYREMLDRRILP 231

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            V    + +  +I  LCK   +  A E+   + + G+ PN  TY  L+ G C+ GQ+ E 
Sbjct: 232 NV----VIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEA 287

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
             +       +++ S G+ P++ TY+  ++  CK GR +    IF  ++     PD  T+
Sbjct: 288 IKF------LEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTY 341

Query: 398 TSLI 401
           +SL+
Sbjct: 342 SSLL 345



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 135/282 (47%), Gaps = 25/282 (8%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G +    P++A   +  ML+ R   P V  ++ +   L K +  D  + +  R+   G+
Sbjct: 206 DGLLKGGDPDKAYATYREMLDRR-ILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGV 264

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+ +TY  L++ FC  G+++     L ++  +   P+ VT++S +  LC   R  EA  
Sbjct: 265 TPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARK 324

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +F  +   G + D+ TY++L++G    G  +    LF+ M   +       +PD   ++T
Sbjct: 325 IFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSD------MQPDHYVFNT 378

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISK 298
           +I    K+                 +++    F  +R Q L   C+ +  LI+G CKI++
Sbjct: 379 LIYASAKQG---------------KVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITR 423

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
           ++ A  LFQ +   G+ PN +TYNI+++GL   G+    K +
Sbjct: 424 MENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEF 465



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 24/301 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++ +   L K    D   + ++ +    + P+   Y+ +I   CK   +     V
Sbjct: 196 PNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEV 255

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R++++  TP+  T+TSL+   C+  ++ EA     K+   G E +V TY++ ++ LC+
Sbjct: 256 HDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCK 315

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  +F+ M           +PD  TYS+++ G   E       G   +   S +
Sbjct: 316 NGRCTEARKIFDSMVKRG------LKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDM 369

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
               + F              LI    K  K+  A  +F  + + GL PN VTY+ LI G
Sbjct: 370 QPDHYVFN------------TLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLING 417

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C   +M      E    LF+ + S G+ P+  TYNI++    + GR ++    + +I+ 
Sbjct: 418 YCKITRM------ENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIK 471

Query: 388 S 388
           S
Sbjct: 472 S 472



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 12/182 (6%)

Query: 51  QFLKERCKSSGEGDITSITP-----------NEALCVFDYMLNMRPSRPPVTSFNILFGC 99
           +FL++ C +  E ++ + +             EA  +FD M+  R  +P +T+++ L   
Sbjct: 289 KFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVK-RGLKPDITTYSSLLHG 347

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
            A       +  LF  +  + + PD Y +N LI    K G+V    +V  ++ +    P+
Sbjct: 348 YAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPN 407

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            VT+++LI   C  +R+  A ALF ++   G   +  TYN ++ GL RTG T  A   + 
Sbjct: 408 CVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYV 467

Query: 220 EM 221
           ++
Sbjct: 468 QI 469



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A ++F  L R G+   + + N    G   D   D      + F    R  ++ + P ++T
Sbjct: 37  ALDVFDELLRRGIGAPIRSLN----GALADVARDNPAAAVSRFNRMARAGASMVTPTVHT 92

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           Y ILI C C  GR+  GF   G ++   F  + + F  L+K L
Sbjct: 93  YGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGL 135


>gi|255661030|gb|ACU25684.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 376

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 159/332 (47%), Gaps = 28/332 (8%)

Query: 75  CVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           C+  + L  R     V SFNI+   L      D  +S+++ +  +G   D  TY IL++ 
Sbjct: 44  CIELWELMGREXSQNVVSFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDG 103

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
           FCK G ++    VL          DA  ++++I  LC E+++ EA ++   +   G   +
Sbjct: 104 FCKNGYINKSLRVLEIAEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPN 163

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
              YNTLING         A+ +F EM + N      C P  +TY+T+I+GLCK      
Sbjct: 164 AHVYNTLINGFMGVSKFDDAIRVFREMGSTN------CSPTVVTYNTLINGLCK------ 211

Query: 255 FLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
             G     ++  + +M    + P V      + +  L+ GLC+  K+++A +L+  +   
Sbjct: 212 --GERFAEAYDLVKEMLEKGWKPCV------ITYSLLMKGLCQGHKVEMALQLWNQVISN 263

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           GL P+V   NILI GLC+ G+       +   +L+  +N     P+L T+N L+  F K 
Sbjct: 264 GLKPDVQMLNILIHGLCSVGKT------QLALMLYFDMNRWNCAPNLVTHNTLMEGFYKD 317

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G + +   I+ RIL +   PD V++   +K L
Sbjct: 318 GDIRNALGIWARILRNGLQPDIVSYNITLKGL 349



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 112/260 (43%), Gaps = 54/260 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ V + M+      P    +N L         +D  + +F+ +  T   P   TYN 
Sbjct: 146 DEAVSVLNGMIK-NGGTPNAHVYNTLINGFMGVSKFDDAIRVFREMGSTNCSPTVVTYNT 204

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK  R +  + ++  +L   + P  +T++ L+K LC   ++  A  L+ ++   G
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVISNG 264

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV   N LI+GLC  G T +AL L+ +M   N      C P+ +T++T+++G  K+ 
Sbjct: 265 LKPDVQMLNILIHGLCSVGKTQLALMLYFDMNRWN------CAPNLVTHNTLMEGFYKDG 318

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              N LG                                               ++  + 
Sbjct: 319 DIRNALG-----------------------------------------------IWARIL 331

Query: 311 RAGLMPNVVTYNILIRGLCN 330
           R GL P++V+YNI ++GLC+
Sbjct: 332 RNGLQPDIVSYNITLKGLCS 351



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 100/265 (37%), Gaps = 52/265 (19%)

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN------- 223
           C    I  A  ++ ++       D   YN ++NG  R G     + L+E M         
Sbjct: 1   CESGDIDGAERVYKEMAESKVSPDAVVYNAMLNGFFRAGRIKDCIELWELMGREXSQNVV 60

Query: 224 ----------GNGEFGVVCE-----------PDAITYSTIIDGLCKEAGSANFLGFSCMA 262
                     GNG+                  D+ TY  ++DG CK              
Sbjct: 61  SFNIMMRGLFGNGDVDKAISIWELMTQSGFVEDSTTYGILVDGFCKNG------------ 108

Query: 263 SFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
               +NK      +   +   L+   +  +I+GLCK +KL  A  +   + + G  PN  
Sbjct: 109 ---YINKSLRVLEIAEEKGGVLDAFAYSAMINGLCKEAKLDEAVSVLNGMIKNGGTPNAH 165

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            YN LI G     + D+         +F+ + ST   P + TYN LIN  CK  R +  +
Sbjct: 166 VYNTLINGFMGVSKFDDA------IRVFREMGSTNCSPTVVTYNTLINGLCKGERFAEAY 219

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            +   +L   + P  +T++ L+K L
Sbjct: 220 DLVKEMLEKGWKPCVITYSLLMKGL 244


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 153/319 (47%), Gaps = 29/319 (9%)

Query: 83  MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142
           MR   P   +F ++     K         LF+++   G+ PD   YNILI+ + K GRV 
Sbjct: 1   MRECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVD 60

Query: 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
               +   ++     P   T+ SL+   C E+++ EA  LF  +   G E DV TY+T+I
Sbjct: 61  EANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTII 120

Query: 203 NGLCRTGHTIVALN-LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           +GLC+TG    AL  LF +M     E G  C  + + Y+ +I+GLCK+         +  
Sbjct: 121 SGLCKTGKVTEALEMLFHKMI----ERG--CSANTVAYNALINGLCKDE--------NIE 166

Query: 262 ASFSALNKMAF--YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            ++  L +MA   Y P        + +  ++ GLC++ K+  A++ F S+P  G  P+VV
Sbjct: 167 RAYKLLEEMASKGYVP------DNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVV 220

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            YN L+  L  +G+ DE         LFK + + G  PD  TYN ++    +   +    
Sbjct: 221 AYNGLLDALYKEGKTDE------AMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAE 274

Query: 380 VIFGRILPSCFTPDAVTFT 398
            +F +++ S   P+  T++
Sbjct: 275 EMFKKMVASGCAPNGATYS 293



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 187/414 (45%), Gaps = 41/414 (9%)

Query: 5   YKINGRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLE--QFLKERCKSSGE 62
           Y   GR+  A+RL  +  S   E  PS  T  + L    K+    E  +  K   +   E
Sbjct: 53  YAKKGRVDEANRLYEEMVSVGLE--PSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFE 110

Query: 63  GDITSITP-----------NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
            D+ + +             EAL +  + +  R       ++N L   L K ++ +    
Sbjct: 111 PDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYK 170

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           L + +   G  PD  TYN +++  C+MG+VS        +    ++PD V +  L+  L 
Sbjct: 171 LLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALY 230

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGV 230
            E +  EA  LF  +   G   D  TYN+++ GL R  +   A  +F++M A+G      
Sbjct: 231 KEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASG------ 284

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
            C P+  TYS ++ G C+     +        +   L +M+    +  V    + +  L+
Sbjct: 285 -CAPNGATYSIVLSGHCRAKKVDD--------AHKVLEEMSKIGAVPDV----VTYNILL 331

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           DGLCK + +  A ELF ++   G  P++V+Y++++ GLC   ++ + +      +LF R+
Sbjct: 332 DGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDAR------VLFDRM 385

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               L PD+ T+NIL++  CK G++     +  ++  S   PD V + +L+  L
Sbjct: 386 IERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGL 439



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 127/283 (44%), Gaps = 60/283 (21%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+RYT+ +++  FCK G++  G+ +  ++L +  +PD + +  LI     + R+ EA  L
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           + ++   G E  ++TYN+L+N  C+      A+ LF+ MA    E G   EPD +TYSTI
Sbjct: 66  YEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMA----EKGF--EPDVVTYSTI 119

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
                                                          I GLCK  K+  A
Sbjct: 120 -----------------------------------------------ISGLCKTGKVTEA 132

Query: 303 RE-LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
            E LF  +   G   N V YN LI GLC D      ++ E  + L + + S G  PD  T
Sbjct: 133 LEMLFHKMIERGCSANTVAYNALINGLCKD------ENIERAYKLLEEMASKGYVPDNIT 186

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           YN +++  C++G+VS     F  +    ++PD V +  L+  L
Sbjct: 187 YNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDAL 229



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 67/134 (50%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++NIL   L KT   D    LF  +   G  PD  +Y++++N  CK  +V    V+
Sbjct: 322 PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVL 381

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R++     PD VTF  L+  LC   ++ EA  L  ++   GC  D   YNTL+NGL +
Sbjct: 382 FDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRK 441

Query: 208 TGHTIVALNLFEEM 221
            G  I A  L + M
Sbjct: 442 QGRHIQADRLTQAM 455



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S++++   L KT        LF R+    L PD  T+NIL++  CK G++     +
Sbjct: 357 PDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDL 416

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           L ++  S   PD V + +L+  L  + R ++A  L   ++  G   D F
Sbjct: 417 LDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSDCF 465


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 155/315 (49%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++N L   L +         L +R+   GL PDR TYNIL++ FCK G+++  F 
Sbjct: 379 KPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFN 438

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +  +   PD  TFT+LI  LC   R+ +A  +   +   G  LD  T+  LI+G C
Sbjct: 439 IFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHC 498

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G       LFE M          C   A T++  +D L K+        +    + + 
Sbjct: 499 KIGKAKDVCFLFENMVENR------CLTTAHTFNCFLDALGKD--------YKLNEANAM 544

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L KM  Y  +  V    +    LI+G C+  +  ++ ++ + + +AG  PNV TY I+I 
Sbjct: 545 LGKMMKYGLVPSV----VTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIIN 600

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLCN+G+++E    ET+      ++S G+ P+ +TY +L+    K GR+   F I   ++
Sbjct: 601 GLCNNGRVEEA---ETILF---SMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMV 654

Query: 387 PSCFTPDAVTFTSLI 401
            +   P++  +++L+
Sbjct: 655 KNGCQPNSHIYSALL 669



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 165/355 (46%), Gaps = 36/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ + D M   +   P V ++ IL   L +    +    +F+++   GL P   T+N 
Sbjct: 294 DKAMKMLDEMAT-KACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNA 352

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN +CK G V   F +L  + +    P+  T+  L++ LC  S+  +A  L  ++   G
Sbjct: 353 LINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNG 412

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  TYN L++G C+ G   +A N+F  M N  G      EPD  T++ +IDGLCK  
Sbjct: 413 LLPDRVTYNILVDGFCKEGQLNMAFNIFNSM-NSAG-----LEPDGFTFTALIDGLCKLG 466

Query: 251 ---------GSANFLGFSC-MASFSAL----------NKMAFYFP-LVRVQCL--CLNFL 287
                    GS    G S    +F+AL            + F F  +V  +CL     F 
Sbjct: 467 RLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFN 526

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
           C +D L K  KL  A  +   + + GL+P+VVT+ ILI G C  G+   +        + 
Sbjct: 527 CFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALS------LKML 580

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +R+   G  P++YTY I+IN  C  GRV     I   +     +P+  T+  L+K
Sbjct: 581 ERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVK 635



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 145/334 (43%), Gaps = 26/334 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  VF+ M      RP   +++IL   L +    +    L + +   G  P   TY +L
Sbjct: 224 EAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 283

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I   C +G       +L  +      P+  T+T LI  LC E +I EA  +F K+   G 
Sbjct: 284 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 343

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              + T+N LING C+ G  + A  L   M  GN      C+P+  TY+ +++GLC+ + 
Sbjct: 344 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN------CKPNIRTYNELMEGLCRVSK 397

Query: 252 S-ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           S   FL    +     L     Y  LV             DG CK  +L +A  +F S+ 
Sbjct: 398 SYKAFLLLRRVVDNGLLPDRVTYNILV-------------DGFCKEGQLNMAFNIFNSMN 444

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            AGL P+  T+  LI GLC  G++++         +   +   G+  D  T+  LI+  C
Sbjct: 445 SAGLEPDGFTFTALIDGLCKLGRLEQANG------ILGSMVKKGISLDEVTFTALIDGHC 498

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           KIG+      +F  ++ +     A TF   +  L
Sbjct: 499 KIGKAKDVCFLFENMVENRCLTTAHTFNCFLDAL 532



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 151/360 (41%), Gaps = 69/360 (19%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L  R S P    ++ L  CLAK         +++R+   G       Y  ++N  CK G 
Sbjct: 130 LGFRLSYP---CYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGF 186

Query: 141 VSHGFVVLGRILRSCF------------------------------------TPDAVTFT 164
           V    +   ++LR  F                                     P++VT++
Sbjct: 187 VQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYS 246

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
            LI  LC   R+ EA  L  ++   GC+    TY  LI   C  G T  A+ + +EMA  
Sbjct: 247 ILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 306

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC- 283
                  C P+  TY+ +ID LC+E                 + +    F  +    LC 
Sbjct: 307 ------ACVPNVHTYTILIDRLCREG---------------KIEEANGVFRKMLKHGLCP 345

Query: 284 --LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             + F  LI+G CK   +  A +L   + +    PN+ TYN L+ GLC       +K Y+
Sbjct: 346 GIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR-----VSKSYK 400

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             FLL +R+   GL PD  TYNIL++ FCK G+++  F IF  +  +   PD  TFT+LI
Sbjct: 401 A-FLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 459



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 116/277 (41%), Gaps = 57/277 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++NIL     K    +   ++F  +N  GL PD +T+  LI+  CK+GR+     +
Sbjct: 415 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGI 474

Query: 148 LGRILRSCFTPDAVTFTSLI---------KDLC--------------------------A 172
           LG +++   + D VTFT+LI         KD+C                           
Sbjct: 475 LGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGK 534

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           + ++ EA A+  K+  +G    V T+  LI G CR G T ++L + E M          C
Sbjct: 535 DYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG------C 588

Query: 233 EPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
            P+  TY+ II+GLC       A  + FS M+SF        Y  LV+            
Sbjct: 589 SPNVYTYTIIINGLCNNGRVEEAETILFS-MSSFGVSPNHFTYAVLVKAH---------- 637

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
               K  +L  A ++  ++ + G  PN   Y+ L+ G
Sbjct: 638 ---VKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSG 671



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 136/325 (41%), Gaps = 26/325 (8%)

Query: 82  NMRPSRPPVTS--FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           NM  +R   T+  FN     L K    +   ++  ++   GL P   T+ ILI   C+ G
Sbjct: 512 NMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAG 571

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
             +    +L R+ ++  +P+  T+T +I  LC   R+ EA  +   +  FG   + FTY 
Sbjct: 572 ETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYA 631

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            L+    + G    A  +   M   NG     C+P++  YS ++ G      S   +G  
Sbjct: 632 VLVKAHVKAGRLDRAFQIVSTMVK-NG-----CQPNSHIYSALLSGFVL---SNTAIGAR 682

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            ++S   L+  +         CL  +   L+D       +  A ++   + + G+ P   
Sbjct: 683 ALSSTGDLDARSLSSEENDNNCLSSHVFRLMD-------VDHALKIRDEIKKCGV-PTED 734

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            YN L+ GLC +G++ E         L + +   GLFPD    +I I  +CK  +  +  
Sbjct: 735 LYNFLVVGLCKEGRIIEADQ------LTQDMVKHGLFPDKAISSI-IEHYCKTCKYDNCL 787

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
                +L + F P   ++  +I  L
Sbjct: 788 EFMKLVLDNKFVPSFASYCWVIHGL 812



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 111/288 (38%), Gaps = 34/288 (11%)

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
           C+   GR+    V++ R L        V      +D  +E+ +++       +   G  L
Sbjct: 77  CYDLDGRIQLLGVLVSRDLFGVAQKAVVLLIQECED--SENGVVKLMGALDGMTELGFRL 134

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
               Y+TL+  L +     VA  ++  M N     G       I Y T+++ LCK     
Sbjct: 135 SYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLG------GIDYRTVVNALCKN---- 184

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR-A 312
              GF   A       +   F L    C       L+   C+   L  A  +F+ + +  
Sbjct: 185 ---GFVQAAEMFCCKVLRLGFGLDTHVC-----TSLVLANCRRDDLGEAFRVFEKMSKEE 236

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
              PN VTY+ILI GLC  G+++E       F L + +   G  P   TY +LI   C I
Sbjct: 237 NCRPNSVTYSILIHGLCEAGRLEEA------FQLKQEMVEKGCQPSTRTYTVLIKAKCDI 290

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           G       +   +      P+  T+T LI       KI E N  FR++
Sbjct: 291 GMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKM 338


>gi|255661022|gb|ACU25680.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 376

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 149/326 (45%), Gaps = 24/326 (7%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + L  R     V SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK 
Sbjct: 48  WELMGREGSRNVASFNIMMRGLFDNGEVDEVISIWELMKNSGFVEDSITYGILVHGFCKN 107

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
             ++    VL    R     DA  ++++I  LC E+++ +A ++   +   GC+     Y
Sbjct: 108 EYINKSLHVLEMAERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPKAHVY 167

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           N LINGL        A  +F EM   +      C P  +TY+T+I+GLCK          
Sbjct: 168 NALINGLVGASKFEDAFRVFHEMGTTH------CSPTIVTYNTLINGLCKGERFGEAYDL 221

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                    N     + L            LI GLC   K+++A +L+  +   G  P+V
Sbjct: 222 VKEMLEKGWNSSVITYSL------------LIKGLCLGHKVEMALQLWNQVTSKGFKPDV 269

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
             +NILI GLC+ G+M      +    L+  +N     P+L T+N L+  F K G + + 
Sbjct: 270 QMHNILIHGLCSVGKM------QLALSLYFDINHWNCAPNLVTHNTLMEGFYKDGDIRNA 323

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKIL 404
            VI+ RIL +   PD +++   +K L
Sbjct: 324 LVIWARILRNGLQPDIISYNITLKGL 349



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 144/319 (45%), Gaps = 36/319 (11%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N F ++GR+   F +   + R   + +  +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNTMLNGFFRVGRIKDCFELWELMGREG-SRNVASFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L     + E  +++  ++  G   D  TY  L++G C+  +   +L++  EMA   G
Sbjct: 66  MRGLFDNGEVDEVISIWELMKNSGFVEDSITYGILVHGFCKNEYINKSLHVL-EMAERKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAG-----------------------SANFLGFSCMAS 263
             GV+   DA  YS +I+GLCKEA                        +A   G    + 
Sbjct: 125 --GVL---DAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPKAHVYNALINGLVGASK 179

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F    ++             + +  LI+GLCK  +   A +L + +   G   +V+TY++
Sbjct: 180 FEDAFRVFHEMGTTHCSPTIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWNSSVITYSL 239

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI+GLC   ++      E    L+ ++ S G  PD+  +NILI+  C +G++     ++ 
Sbjct: 240 LIKGLCLGHKV------EMALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYF 293

Query: 384 RILPSCFTPDAVTFTSLIK 402
            I      P+ VT  +L++
Sbjct: 294 DINHWNCAPNLVTHNTLME 312



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V   NIL   L         LSL+  +N     P+  T+N L+  F K G + +  V
Sbjct: 266 KPDVQMHNILIHGLCSVGKMQLALSLYFDINHWNCAPNLVTHNTLMEGFYKDGDIRNALV 325

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           +  RILR+   PD +++   +K LC+ +RI ++
Sbjct: 326 IWARILRNGLQPDIISYNITLKGLCSCNRISDS 358


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 160/341 (46%), Gaps = 36/341 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLS-LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           P V S+N +   + +TK    +   +FK +  +G+ P+ YTYNILI  FC  G +  G  
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLF 224

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
             G + R+   P+ VT+ ++I   C   +I EA  L   + + G   ++ +YN +INGLC
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLC 284

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----------------KEA 250
           R G       + EEM+           PD +T++T+I+G C                K  
Sbjct: 285 REGQMKETSEILEEMSKRR------YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNG 338

Query: 251 GSANFLGFS----CMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIAR 303
            S N + ++     M     LN+   +   +R + L  N   +  LIDG  +   LK A 
Sbjct: 339 LSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAY 398

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           ++ + +   G  P ++TYN LI G C  G+M++         L + +   G  PD+ +Y+
Sbjct: 399 QIMKEMVENGFTPTIITYNALINGHCILGRMEDASG------LLQEMIERGFIPDVVSYS 452

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +I+ FC+   +   F +   ++    +PD  T++SLI+ L
Sbjct: 453 TIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGL 493



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 152/316 (48%), Gaps = 28/316 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +     K +       L + + L GL P+  +YN++IN  C+ G++     +
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEI 295

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  + +  + PD VTF +LI   C      +A  L  ++   G   +V TY TLIN +C+
Sbjct: 296 LEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCK 355

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+   A+   ++M +          P+  TY+T+IDG  ++       GF   A +  +
Sbjct: 356 AGNLNRAMEFLDQMRDRG------LHPNGRTYTTLIDGFSQQ-------GFLKQA-YQIM 401

Query: 268 NKMAF--YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            +M    + P +      + +  LI+G C + +++ A  L Q +   G +P+VV+Y+ +I
Sbjct: 402 KEMVENGFTPTI------ITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTII 455

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C + ++      E  F L   + + G+ PD+ TY+ LI   CK  R+     +F  +
Sbjct: 456 SGFCRNQEL------EKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEM 509

Query: 386 LPSCFTPDAVTFTSLI 401
           L     PD VT+TSLI
Sbjct: 510 LSLGLPPDEVTYTSLI 525



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 158/335 (47%), Gaps = 33/335 (9%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++ ++   P + S+N++   L +         + + ++     PDR T+N LIN +C +G
Sbjct: 263 LMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVG 322

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
                 V+   ++++  +P+ VT+T+LI  +C    +  A     ++R  G   +  TY 
Sbjct: 323 NFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYT 382

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TLI+G  + G    A  + +EM   NG       P  ITY+ +I+G C        LG  
Sbjct: 383 TLIDGFSQQGFLKQAYQIMKEMVE-NG-----FTPTIITYNALINGHC-------ILGRM 429

Query: 260 CMASFSALNKMAF--YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
             AS   L +M    + P V      +++  +I G C+  +L+ A +L   +   G+ P+
Sbjct: 430 EDAS-GLLQEMIERGFIPDV------VSYSTIISGFCRNQELEKAFQLKVEMVAKGISPD 482

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           V TY+ LI+GLC   ++ E      V  LF+ + S GL PD  TY  LIN +C  G +  
Sbjct: 483 VATYSSLIQGLCKQRRLGE------VCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDK 536

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
              +   ++   F+PD VT+  L     IN F +Q
Sbjct: 537 ALRLHDEMIQKGFSPDIVTYNVL-----INGFNKQ 566



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 150/357 (42%), Gaps = 54/357 (15%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   + K  + +  +    ++   GL P+  TY  LI+ F + G +   + +
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  ++ + FTP  +T+ +LI   C   R+ +A+ L  ++   G   DV +Y+T+I+G CR
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFS 265
                 A  L  EM A G         PD  TYS++I GLCK+         F  M S  
Sbjct: 461 NQELEKAFQLKVEMVAKG-------ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513

Query: 266 ALNKMAFYFPLVRVQCL----------------------CLNFLCLIDGLCKISKLKIAR 303
                  Y  L+   C+                       + +  LI+G  K S+ K A+
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAK 573

Query: 304 ELFQSLPRAGLMPNVVTYNILI---------------RGLCNDGQMDETKHY-ETVFLLF 347
            L   L     +PN +TYN LI               +G C  G M+E     E++    
Sbjct: 574 RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +LN          YN++I+   K+G +   + ++  +L S F P +VT  +L K L
Sbjct: 634 YKLNEE-------VYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSL 683



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 122/265 (46%), Gaps = 37/265 (13%)

Query: 156 FTPDAVTFTSLIKDLC-AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA 214
           F P  +++ +++  +   +  +  A  +F ++   G   +V+TYN LI G C  G+  + 
Sbjct: 163 FMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMG 222

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
           L  F EM   NG     C P+ +TY+TIID  CK                  L K+   F
Sbjct: 223 LFFFGEMER-NG-----CLPNVVTYNTIIDAYCK------------------LRKIGEAF 258

Query: 275 PLVRVQCL------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
            L+R+  L       +++  +I+GLC+  ++K   E+ + + +   +P+ VT+N LI G 
Sbjct: 259 KLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGY 318

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           CN G      ++    +L   +   GL P++ TY  LIN  CK G ++       ++   
Sbjct: 319 CNVG------NFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDR 372

Query: 389 CFTPDAVTFTSLIKILEINSFFRQV 413
              P+  T+T+LI       F +Q 
Sbjct: 373 GLHPNGRTYTTLIDGFSQQGFLKQA 397



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 119/321 (37%), Gaps = 54/321 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++ +     + +  +    L   +   G+ PD  TY+ LI   CK  R+     +
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L     PD VT+TSLI   C E  + +A  L  ++   G   D+ TYN LING  +
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNK 565

Query: 208 TGHTIVALN-----LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA 262
              T  A       L+EE             P+ ITY+T+ID       + N L F    
Sbjct: 566 QSRTKEAKRLLLKLLYEESV-----------PNEITYNTLID-------NCNNLEFKSA- 606

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
                                   L L+ G C    +  A  + +S+ + G   N   YN
Sbjct: 607 ------------------------LALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYN 642

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           ++I G    G +      E  + L+K +  +G  P   T   L       G+      + 
Sbjct: 643 VIIHGHSKVGNI------EKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLL 696

Query: 383 GRILPSCFTPDAVTFTSLIKI 403
              L SC   +A     LI I
Sbjct: 697 DYTLKSCRITEAALAKVLIGI 717


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 151/304 (49%), Gaps = 29/304 (9%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           PNEA+  F  ML      P    FN+L   L + K  +T LSLFK+L+  G+ P+  TYN
Sbjct: 184 PNEAIKAFHQMLEF-GYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYN 242

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           ILI   C   ++SH + +  ++ +    PD  T++ L++ LC +S++  A  +  ++   
Sbjct: 243 ILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNK 302

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   D  TYNTL+N LCR  +   A  L  +M        + C PD I Y+T+I G C+E
Sbjct: 303 GYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKV------MGCNPDVINYNTVITGFCRE 356

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQ 307
                           AL+       +    CL   L++  L++GLC   K   A++  +
Sbjct: 357 G--------------RALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVE 402

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +   G +P++  Y++LI GLCN+G++ E    E + ++ K+     L P   T+++L+ 
Sbjct: 403 EMISNGFIPHISIYHLLITGLCNEGKVGEA--CEVLVMMTKQT----LAPHESTWSVLLM 456

Query: 368 CFCK 371
             C+
Sbjct: 457 RICE 460



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 149/358 (41%), Gaps = 47/358 (13%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLN------LTGLFPDRY 126
           A+ +F+        +   ++++ L   L + + + T+  L +++         GLF D  
Sbjct: 116 AMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVD-- 173

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
               +I  + ++G  +       ++L   + P A  F  L+  L     +  A +LF KL
Sbjct: 174 ----IIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKL 229

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
             FG   +  TYN LI   C +     A  LF +M          C PD  TYS ++ GL
Sbjct: 230 HEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQG------CIPDVETYSILMQGL 283

Query: 247 CKEAGSANFLGF-----------SCMASFSALNKM-------AFYFPLVRVQCL-----C 283
           C+++     LG              +   + LN +         Y  L +++ +      
Sbjct: 284 CRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDV 343

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           +N+  +I G C+  +   A ++ + +P  G +PN ++Y  L+ GLCN+G+ DE K +   
Sbjct: 344 INYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDF--- 400

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               + + S G  P +  Y++LI   C  G+V     +   +      P   T++ L+
Sbjct: 401 ---VEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLL 455



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 10/119 (8%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
            + LI+  C    L+ A  LF+ L   G+ PN  TYNILIR  C+  ++         + 
Sbjct: 210 LIVLIEHKC----LETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSH------AYF 259

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           LF +++  G  PD+ TY+IL+   C+  +V +   +   +L   + PDA+T+ +L+  L
Sbjct: 260 LFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSL 318



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 6/119 (5%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F+ +I+   ++     A + F  +   G  P    +N+L+  L       E K  ET   
Sbjct: 171 FVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLI------EHKCLETALS 224

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           LFK+L+  G+ P+  TYNILI   C   ++S  + +F ++      PD  T++ L++ L
Sbjct: 225 LFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGL 283


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 153/318 (48%), Gaps = 26/318 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P VT+FN L   L K         LF ++   G+ P+ +T+NI I   CK G +     +
Sbjct: 293 PDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRL 352

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG + R    PD VT+ ++I  LC +SR++EA     K+   G E + FTYN++I+G C+
Sbjct: 353 LGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCK 412

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF-SA 266
            G  + A  + ++            +PD  TY ++++G C++           MA F   
Sbjct: 413 KGMVVDANRILKDAVFKG------FKPDEFTYCSLVNGFCQDGDPD-----QAMAVFKDG 461

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L K       +R   +  N   LI GLC+   +  A +L   +   G  P++ TYN++I 
Sbjct: 462 LGKG------LRPSIIVYN--TLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIIN 513

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G + +  H      L     + G  PD++TYN L++ +C+  ++ S   +  R+ 
Sbjct: 514 GLCKMGCLSDANH------LIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMW 567

Query: 387 PSCFTPDAVTFTSLIKIL 404
               TPD +T+ +L+  L
Sbjct: 568 SQGMTPDVITYNTLLNGL 585



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 153/339 (45%), Gaps = 32/339 (9%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P++A+ VF   L  +  RP +  +N L   L +       L L   +   G  PD +TYN
Sbjct: 451 PDQAMAVFKDGLG-KGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYN 509

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           ++IN  CKMG +S    ++G  +     PD  T+ +L+   C + ++  A  L  ++   
Sbjct: 510 LIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQ 569

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-- 247
           G   DV TYNTL+NGLC+T  +   + +F+ M          C P+ ITY+TII+ LC  
Sbjct: 570 GMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKG------CAPNIITYNTIIESLCNS 623

Query: 248 -KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            K   + + LG       +         P V      ++F  LI G CK+  L  A  LF
Sbjct: 624 KKVNEAVDLLGEMKSKGLT---------PDV------VSFGTLITGFCKVGDLDGAYGLF 668

Query: 307 QSLPRA-GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           + + +   +     TYNI+I          E  + +    LF  +   G  PD YTY +L
Sbjct: 669 RGMEKQYDVSHTTATYNIIISAF------SEQLNMKMALRLFSEMKKNGCDPDNYTYRVL 722

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           I+ FCK G V+ G+      +   F P   TF  ++  L
Sbjct: 723 IDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCL 761



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 129/295 (43%), Gaps = 24/295 (8%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    LF  +    L PD  T+N L++  CK G V     +  ++L+    P+  TF   
Sbjct: 277 DRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIF 336

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           I+ LC E  +  A  L   +   G   DV TYNT+I GLCR    + A     +M NG  
Sbjct: 337 IQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGG- 395

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
                 EP+  TY++IIDG CK+    +       A F       F             +
Sbjct: 396 -----FEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEF------------TY 438

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             L++G C+      A  +F+     GL P+++ YN LI+GLC  G +           L
Sbjct: 439 CSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLI------LPALQL 492

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              +   G  PD++TYN++IN  CK+G +S    + G  +     PD  T+ +L+
Sbjct: 493 MNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLV 547



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 126/290 (43%), Gaps = 26/290 (8%)

Query: 113 FKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
           F+R++L    P  Y+YN ++N   + G  +    V  R+       D  T+T  IK  C 
Sbjct: 178 FERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCR 237

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
             R   A  L   + V GC  +   Y T++ G    G    A  LF+EM         +C
Sbjct: 238 TGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLE-----CCLC 292

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL-NFLCLID 291
            PD  T++ ++  LCK+              F   ++  F   L R  C  L  F   I 
Sbjct: 293 -PDVTTFNKLVHALCKKG-------------FVLESERLFDKVLKRGVCPNLFTFNIFIQ 338

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GLCK   L  A  L   + R GL P+VVTYN +I GLC   ++ E +       L K +N
Sbjct: 339 GLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEE-----CLHKMVN 393

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             G  P+ +TYN +I+ +CK G V     I    +   F PD  T+ SL+
Sbjct: 394 G-GFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLV 442



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 24/229 (10%)

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           + +I EA   F ++ +F C+  V++YN ++N L   G+   A  ++  M +         
Sbjct: 168 KGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKK------V 221

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
           E D  TY+  I   C+               ++AL ++    P++      + +  ++ G
Sbjct: 222 ESDVYTYTIRIKSFCRTG-----------RPYAAL-RLLRNMPVLGCFSNAVAYCTVVTG 269

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
             +      ARELF  +    L P+V T+N L+  LC  G + E++       LF ++  
Sbjct: 270 FYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESER------LFDKVLK 323

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G+ P+L+T+NI I   CK G +     + G +      PD VT+ ++I
Sbjct: 324 RGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVI 372



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            ++NI+    ++  +    L LF  +   G  PD YTY +LI+ FCK G V+ G+  L  
Sbjct: 682 ATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLE 741

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
            +   F P   TF  ++  LC E ++ EA  +
Sbjct: 742 NIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGI 773



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 41/143 (28%)

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            K++ A + F+ +      P+V +YN ++  L   G      ++     ++ R+    + 
Sbjct: 169 GKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFG------YFNQAHKVYMRMKDKKVE 222

Query: 357 PDLYTYNILINCFCKIGR-------------------------VSSGFVIFG-------- 383
            D+YTY I I  FC+ GR                         V +GF  FG        
Sbjct: 223 SDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRAREL 282

Query: 384 --RILPSCFTPDAVTFTSLIKIL 404
              +L  C  PD  TF  L+  L
Sbjct: 283 FDEMLECCLCPDVTTFNKLVHAL 305


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 155/315 (49%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++N L   L +         L +R+   GL PDR TYNIL++ FCK G+++  F 
Sbjct: 402 KPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFN 461

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +  +   PD  TFT+LI  LC   R+ +A  +   +   G  LD  T+  LI+G C
Sbjct: 462 IFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHC 521

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G       LFE M          C   A T++  +D L K+        +    + + 
Sbjct: 522 KIGKAKDVCFLFENMVENR------CLTTAHTFNCFLDALGKD--------YKLNEANAM 567

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L KM  Y  +  V    +    LI+G C+  +  ++ ++ + + +AG  PNV TY I+I 
Sbjct: 568 LGKMMKYGLVPSV----VTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIIN 623

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLCN+G+++E    ET+      ++S G+ P+ +TY +L+    K GR+   F I   ++
Sbjct: 624 GLCNNGRVEEA---ETILF---SMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMV 677

Query: 387 PSCFTPDAVTFTSLI 401
            +   P++  +++L+
Sbjct: 678 KNGCQPNSHIYSALL 692



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 164/355 (46%), Gaps = 36/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ + D M   +   P V ++ IL   L +    +    +F+++   GL P   T+N 
Sbjct: 317 DKAMKMLDEMAT-KACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNA 375

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN +CK G V   F +L  + +    P+  T+  L++ LC  S+  +A  L  ++   G
Sbjct: 376 LINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNG 435

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
              D  TYN L++G C+ G   +A N+F  M +         EPD  T++ +IDGLCK  
Sbjct: 436 LLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAG------LEPDGFTFTALIDGLCKLG 489

Query: 249 EAGSANFLGFSCMASFSALNKMAF-------------------YFPLVRVQCL--CLNFL 287
               AN +  S +    +L+++ F                   +  +V  +CL     F 
Sbjct: 490 RLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFN 549

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
           C +D L K  KL  A  +   + + GL+P+VVT+ ILI G C  G+   +        + 
Sbjct: 550 CFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALS------LKML 603

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +R+   G  P++YTY I+IN  C  GRV     I   +     +P+  T+  L+K
Sbjct: 604 ERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVK 658



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 145/334 (43%), Gaps = 26/334 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  VF+ M      RP   +++IL   L +    +    L + +   G  P   TY +L
Sbjct: 247 EAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 306

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I   C +G       +L  +      P+  T+T LI  LC E +I EA  +F K+   G 
Sbjct: 307 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 366

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              + T+N LING C+ G  + A  L   M  GN      C+P+  TY+ +++GLC+ + 
Sbjct: 367 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN------CKPNIRTYNELMEGLCRVSK 420

Query: 252 S-ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           S   FL    +     L     Y  LV             DG CK  +L +A  +F S+ 
Sbjct: 421 SYKAFLLLRRVVDNGLLPDRVTYNILV-------------DGFCKEGQLNMAFNIFNSMN 467

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            AGL P+  T+  LI GLC  G++++         +   +   G+  D  T+  LI+  C
Sbjct: 468 SAGLEPDGFTFTALIDGLCKLGRLEQANG------ILGSMVKKGISLDEVTFTALIDGHC 521

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           KIG+      +F  ++ +     A TF   +  L
Sbjct: 522 KIGKAKDVCFLFENMVENRCLTTAHTFNCFLDAL 555



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 151/360 (41%), Gaps = 69/360 (19%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L  R S P    ++ L  CLAK         +++R+   G       Y  ++N  CK G 
Sbjct: 153 LGFRLSYP---CYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGF 209

Query: 141 VSHGFVVLGRILRSCF------------------------------------TPDAVTFT 164
           V    +   ++LR  F                                     P++VT++
Sbjct: 210 VQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYS 269

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
            LI  LC   R+ EA  L  ++   GC+    TY  LI   C  G T  A+ + +EMA  
Sbjct: 270 ILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 329

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC- 283
                  C P+  TY+ +ID LC+E                 + +    F  +    LC 
Sbjct: 330 ------ACVPNVHTYTILIDRLCREG---------------KIEEANGVFRKMLKHGLCP 368

Query: 284 --LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             + F  LI+G CK   +  A +L   + +    PN+ TYN L+ GLC       +K Y+
Sbjct: 369 GIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR-----VSKSYK 423

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             FLL +R+   GL PD  TYNIL++ FCK G+++  F IF  +  +   PD  TFT+LI
Sbjct: 424 A-FLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 482



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 146/367 (39%), Gaps = 74/367 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++NIL     K    +   ++F  +N  GL PD +T+  LI+  CK+GR+     +
Sbjct: 438 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGI 497

Query: 148 LGRILRSCFTPDAVTFTSLI---------KDLC--------------------------A 172
           LG +++   + D VTFT+LI         KD+C                           
Sbjct: 498 LGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGK 557

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           + ++ EA A+  K+  +G    V T+  LI G CR G T ++L + E M          C
Sbjct: 558 DYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG------C 611

Query: 233 EPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
            P+  TY+ II+GLC       A  + FS M+SF        Y  LV+            
Sbjct: 612 SPNVYTYTIIINGLCNNGRVEEAETILFS-MSSFGVSPNHFTYAVLVKAH---------- 660

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI------------RGLCNDGQMDE-- 336
               K  +L  A ++  ++ + G  PN   Y+ L+            R L + G +D   
Sbjct: 661 ---VKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARS 717

Query: 337 -TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
            +        L   +   G+ P    YN L+   CK GR+     +   ++     PD  
Sbjct: 718 LSSEENDNNCLSNEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK- 775

Query: 396 TFTSLIK 402
             +S+I+
Sbjct: 776 AISSIIE 782



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 133/338 (39%), Gaps = 33/338 (9%)

Query: 82  NMRPSRPPVTS--FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           NM  +R   T+  FN     L K    +   ++  ++   GL P   T+ ILI   C+ G
Sbjct: 535 NMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAG 594

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
             +    +L R+ ++  +P+  T+T +I  LC   R+ EA  +   +  FG   + FTY 
Sbjct: 595 ETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYA 654

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            L+    + G    A  +   M   NG     C+P++  YS ++ G      S   +G  
Sbjct: 655 VLVKAHVKAGRLDRAFQIVSTMVK-NG-----CQPNSHIYSALLSGFVL---SNTAIGAR 705

Query: 260 CMASFSALNKMAFYFPLVRVQCLC-------------LNFLCLIDGLCKISKLKIARELF 306
            ++S   L+  +         CL               NFL +  GLCK  ++  A +L 
Sbjct: 706 ALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVV--GLCKEGRIIEADQLT 763

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           Q + + GL P+    +I I   C      +T  Y+      K +      P   +Y  +I
Sbjct: 764 QDMVKHGLFPDKAISSI-IEHYC------KTCKYDNCLEFMKLVLDNKFVPSFASYCWVI 816

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +     GRV     +   ++      + V  T  I+ L
Sbjct: 817 HGLRNEGRVQEAQKLVSDLVRHTGIEEEVEVTPSIEFL 854



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 111/288 (38%), Gaps = 34/288 (11%)

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
           C+   GR+    V++ R L        V      +D  +E+ +++       +   G  L
Sbjct: 100 CYDLDGRIQLLGVLVSRDLFGVAQKAVVLLIQECED--SENGVVKLMGALDGMTELGFRL 157

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
               Y+TL+  L +     VA  ++  M N     G       I Y T+++ LCK     
Sbjct: 158 SYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLG------GIDYRTVVNALCKN---- 207

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR-A 312
              GF   A       +   F L    C       L+   C+   L  A  +F+ + +  
Sbjct: 208 ---GFVQAAEMFCCKVLRLGFGLDTHVC-----TSLVLANCRRDDLGEAFRVFEKMSKEE 259

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
              PN VTY+ILI GLC  G+++E       F L + +   G  P   TY +LI   C I
Sbjct: 260 NCRPNSVTYSILIHGLCEAGRLEEA------FQLKQEMVEKGCQPSTRTYTVLIKAKCDI 313

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           G       +   +      P+  T+T LI       KI E N  FR++
Sbjct: 314 GMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKM 361


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 146/318 (45%), Gaps = 27/318 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++N +      T   D    L   + +    PD YTYN LI   C  GR  +  V
Sbjct: 121 EPDVMAYNAMVAGYCVTGQLDAARRLVADMPME---PDSYTYNTLIRGLCGRGRTGNALV 177

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL  +LR    PD VT+T L++  C  S   +A  L  ++R  GC  D+ TYN ++NG+C
Sbjct: 178 VLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGIC 237

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A+   + + +        CEP+ ++Y+ ++ GLC      +      MA  S 
Sbjct: 238 QEGRVDDAIEFLKSLPSHG------CEPNTVSYNIVLKGLCTAERWED--AEKLMAEMS- 288

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                 Y P V      + F  LI  LC+   ++ A E+   +P+ G  PN ++YN ++ 
Sbjct: 289 ---QKGYPPNV------VTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILH 339

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             C   +MD    +  V L+  R    G +PD+ +YN L+   C+ G V +   +  ++ 
Sbjct: 340 AFCKQKKMDRAMAF--VELMVSR----GCYPDIVSYNTLLTALCRGGEVDAAVELLHQLK 393

Query: 387 PSCFTPDAVTFTSLIKIL 404
               TP  +++ ++I  L
Sbjct: 394 DKGCTPVLISYNTVIDGL 411



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 159/364 (43%), Gaps = 36/364 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL V D ML  R   P V ++ IL     K   Y   + L   +   G  PD  TYN+++
Sbjct: 175 ALVVLDDMLR-RGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVV 233

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  C+ GRV      L  +      P+ V++  ++K LC   R  +A  L  ++   G  
Sbjct: 234 NGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYP 293

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            +V T+N LI+ LCR G    A+ + +++     ++G  C P++++Y+ I+   CK+   
Sbjct: 294 PNVVTFNMLISFLCRRGLVEPAMEVLDQIP----KYG--CTPNSLSYNPILHAFCKQKKM 347

Query: 253 ANFLGF-SCMASFSALNKMAFYFPLVRVQC----------------------LCLNFLCL 289
              + F   M S      +  Y  L+   C                      + +++  +
Sbjct: 348 DRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTV 407

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           IDGL K  K K A EL   +   GL P+++TY+ +  GLC + +++E          F +
Sbjct: 408 IDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEE------AIRAFCK 461

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409
           +   G+ P+   YN ++   CK     +   +F  ++ +   P+  T+T LI+ L     
Sbjct: 462 VQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGL 521

Query: 410 FRQV 413
            ++ 
Sbjct: 522 VKEA 525



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 122/254 (48%), Gaps = 22/254 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH--GF 145
           P V +FN+L   L +    +  + +  ++   G  P+  +YN +++ FCK  ++     F
Sbjct: 294 PNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAF 353

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           V L  + R C+ PD V++ +L+  LC    +  A  L  +L+  GC   + +YNT+I+GL
Sbjct: 354 VEL-MVSRGCY-PDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGL 411

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
            + G T  AL L  EM           +PD ITYSTI  GLC+E           + +F 
Sbjct: 412 TKAGKTKEALELLNEMVTKG------LQPDIITYSTISSGLCREDRIE-----EAIRAFC 460

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            +  M      +R   +  N + L  GLCK  +   A +LF  +   G MPN  TY ILI
Sbjct: 461 KVQDMG-----IRPNTVLYNAILL--GLCKRRETHNAIDLFIYMISNGCMPNESTYTILI 513

Query: 326 RGLCNDGQMDETKH 339
            GL  +G + E + 
Sbjct: 514 EGLTYEGLVKEARE 527



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 122/287 (42%), Gaps = 40/287 (13%)

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTF--TSLIKDLCAESRIMEA 179
            P R   N  +    + G +     ++  +  S   P A      +LIK LCA  R  EA
Sbjct: 56  VPHRAVSNDRLRGLVRRGDLEEALRLVESM--SGLEPSAAPGPCAALIKKLCASGRTAEA 113

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             +        CE DV  YN ++ G C TG    A  L  +M           EPD+ TY
Sbjct: 114 RRVLA-----ACEPDVMAYNAMVAGYCVTGQLDAARRLVADMP---------MEPDSYTY 159

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKIS 297
           +T+I GLC    + N L          L+ M      +R  C+   + +  L++  CK S
Sbjct: 160 NTLIRGLCGRGRTGNAL--------VVLDDM------LRRGCVPDVVTYTILLEATCKRS 205

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
             K A +L   +   G  P+++TYN+++ G+C +G++D+   +       K L S G  P
Sbjct: 206 GYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEF------LKSLPSHGCEP 259

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +  +YNI++   C   R      +   +    + P+ VTF  LI  L
Sbjct: 260 NTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFL 306



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A+   + M++ R   P + S+N L   L +    D  + L  +L   G  P   +YN 
Sbjct: 348 DRAMAFVELMVS-RGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNT 406

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+   K G+      +L  ++     PD +T++++   LC E RI EA   F K++  G
Sbjct: 407 VIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMG 466

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKE 249
              +   YN ++ GLC+   T  A++LF  M +NG       C P+  TY+ +I+GL  E
Sbjct: 467 IRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNG-------CMPNESTYTILIEGLTYE 519

Query: 250 A---GSANFLGFSC---MASFSALNKMAF 272
                +   LG  C   + S   +NK A 
Sbjct: 520 GLVKEARELLGELCSRGVVSKGLINKAAI 548



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 75/189 (39%), Gaps = 30/189 (15%)

Query: 229 GVVCEPDAITYSTI----IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL 284
           GV   P+A+ +  +    + GL +       L    + S S L   A   P         
Sbjct: 48  GVAASPNAVPHRAVSNDRLRGLVRRGDLEEALRL--VESMSGLEPSAAPGPCA------- 98

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
               LI  LC   +   AR +      A   P+V+ YN ++ G C  GQ+D  +      
Sbjct: 99  ---ALIKKLCASGRTAEARRVL-----AACEPDVMAYNAMVAGYCVTGQLDAAR------ 144

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              + +    + PD YTYN LI   C  GR  +  V+   +L     PD VT+T L++  
Sbjct: 145 ---RLVADMPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEAT 201

Query: 405 EINSFFRQV 413
              S ++Q 
Sbjct: 202 CKRSGYKQA 210


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 149/298 (50%), Gaps = 30/298 (10%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           L  FK +   G  P+  TYN +I+ +CK+ R    F  L  +      P+ +TF  +I  
Sbjct: 3   LRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIING 62

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
           LC + R+ E + +  ++   G   D  TYNTL+NG C+ G+   AL L  EM   NG   
Sbjct: 63  LCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVR-NG--- 118

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---F 286
               P+ +TY+++I+ +CK AG+              LN+   +F  + V+ LC N   +
Sbjct: 119 --LSPNVVTYTSLINSMCK-AGN--------------LNRAMEFFDQMHVRGLCPNERTY 161

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             +I+G  +   L  A  +   + R+G +P++VTYN LI G C  G+M+E         L
Sbjct: 162 TTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEA------IGL 215

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            + +   G+ PD+ +Y+ +I+ F +   +   F +   ++     PDAVT++SLI+ L
Sbjct: 216 LQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGL 273



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 159/348 (45%), Gaps = 51/348 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +     K K  D      + + L GL P+  T+N++IN  C+ GR+     V
Sbjct: 16  PNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEV 75

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  + R  + PD VT+ +L+   C E    +A  L  ++   G   +V TY +LIN +C+
Sbjct: 76  LVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCK 135

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+   A+  F++M         +C P+  TY+TII+G  ++             ++  L
Sbjct: 136 AGNLNRAMEFFDQM-----HVRGLC-PNERTYTTIINGFAQQG--------LLDEAYRVL 181

Query: 268 NKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           N+M  + + P +      + +  LI+G C + +++ A  L Q +   G++P+VV+Y+ +I
Sbjct: 182 NEMTRSGFIPSI------VTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTII 235

Query: 326 RGLCNDGQMD-----------------------------ETKHYETVFLLFKRLNSTGLF 356
            G   + ++D                             E +       +F+ + +  L 
Sbjct: 236 SGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLP 295

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           PD +TY  LIN +CK G ++    +   ++   F PDAVT+  LI  L
Sbjct: 296 PDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGL 343



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 151/355 (42%), Gaps = 50/355 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   + K  + +  +  F ++++ GL P+  TY  +IN F + G +   + V
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRV 180

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  + RS F P  VT+ +LI   C   R+ EA  L   +   G   DV +Y+T+I+G  R
Sbjct: 181 LNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFAR 240

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSA 266
                 A  +  EM       G    PDA+TYS++I GLC++         F  M +   
Sbjct: 241 NQELDRAFQMKVEM------IGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKL 294

Query: 267 LNKMAFYFPLVRVQCL----------------------CLNFLCLIDGLCKISKLKIARE 304
                 Y  L+   C                        + +  LI+GL K ++ K AR 
Sbjct: 295 PPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARR 354

Query: 305 LFQSLPRAGLMPNVVTYNILI---------------RGLCNDGQMDETKHYETVFLLFKR 349
           L   L     +P+ VTYN LI               +G C  G MDE         +F+ 
Sbjct: 355 LLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQ------VFES 408

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + +    P+   YN++I+  C+IG V   + ++  ++   F P  VT  +L+K L
Sbjct: 409 MINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKAL 463



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 123/317 (38%), Gaps = 46/317 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++ +    A+ +  D    +   +    + PD  TY+ LI   C+  R++    +
Sbjct: 226 PDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDM 285

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L     PD  T+T+LI   C E  + +A  L  ++   G   D  TYN LINGL +
Sbjct: 286 FQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNK 345

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-EAGSANFLGFSCMASFSA 266
              +  A  L  ++      F     P A+TY+T+I+  C  E  SA             
Sbjct: 346 QARSKEARRLLLKL------FYDDSIPSAVTYNTLIENCCNIEFKSA------------- 386

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                               + L+ G C    +  A ++F+S+      PN   YN++I 
Sbjct: 387 --------------------VALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIH 426

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C  G +   K Y+    L+K +      P   T   L+      G       + G IL
Sbjct: 427 GHCRIGNV--LKAYK----LYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIGDIL 480

Query: 387 PSCFTPDAVTFTSLIKI 403
            SC   DA     L++I
Sbjct: 481 RSCKLTDAELSKVLVEI 497


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 142/326 (43%), Gaps = 25/326 (7%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VFD ML  R  +P V +FN L   + K    +   +L   +   G+ PD YTY   I   
Sbjct: 136 VFDEMLR-RGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGL 194

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK GR+     +   +      P+ V  T+LI   C E  +     L  ++   G + D+
Sbjct: 195 CKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADL 254

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             YN L+NG CR      A ++ EEM           +PD +TY+T+IDG CKE      
Sbjct: 255 VAYNALVNGFCRVRDMKAANDIVEEMRKDG------LKPDKVTYTTLIDGCCKE------ 302

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                        +M        V    + +  LI GL K  +   A  +   +  AGL 
Sbjct: 303 ------GELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQ 356

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+  TY ++I   C +G +      +T F   K + + G  P + TYN+++N FC +G++
Sbjct: 357 PDNTTYTMVIDAFCKNGDV------KTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQM 410

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
            +  ++   +L     P+ +T+  L+
Sbjct: 411 KNADMLLNAMLNIGVCPNDITYNILL 436



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 134/283 (47%), Gaps = 24/283 (8%)

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
            G+ P+   +N+L+    + G+++    V   +LR    P  VTF +L+  +C  S +  
Sbjct: 108 AGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNN 167

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A AL   +   G   DV+TY   I GLC+TG    A+ +FEEM     E G+   P+ + 
Sbjct: 168 ANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMC----ERGL--NPNTVV 221

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
            +T+ID  CKE               +A  ++ +      V+   + +  L++G C++  
Sbjct: 222 LTTLIDAHCKE------------GDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRD 269

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           +K A ++ + + + GL P+ VTY  LI G C +G++D      T   + + ++  G+  D
Sbjct: 270 MKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELD------TAMEMKQEMSDEGVALD 323

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             TY  LI+   K GR      I   ++ +   PD  T+T +I
Sbjct: 324 DVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVI 366



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P  T++ ++     K     T     K +   G  P   TYN+++N FC +G++ +  +
Sbjct: 356 QPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADM 415

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
           +L  +L     P+ +T+  L+   C   ++ +   L +     G   D   Y +LIN
Sbjct: 416 LLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEELKS---AKGMVSDFGVYTSLIN 469



 Score = 41.2 bits (95), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           D + ++  +  A   +  L  AG+ P    +N+L+R +   G++   ++      +F  +
Sbjct: 87  DLMNRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARN------VFDEM 140

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              G+ P + T+N L++  CK   +++   + G +  +   PD  T+ + I+ L
Sbjct: 141 LRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGL 194


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 155/315 (49%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++N L   L +         L +R+   GL PDR TYNIL++ FCK G+++  F 
Sbjct: 336 KPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFN 395

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +  +   PD  TFT+LI  LC   R+ +A  +   +   G  LD  T+  LI+G C
Sbjct: 396 IFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHC 455

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G       LFE M          C   A T++  +D L K+        +    + + 
Sbjct: 456 KIGKAKDVCFLFENMVENR------CLTTAHTFNCFLDALGKD--------YKLNEANAM 501

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L KM  Y  +  V    +    LI+G C+  +  ++ ++ + + +AG  PNV TY I+I 
Sbjct: 502 LGKMMKYGLVPSV----VTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIIN 557

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLCN+G+++E    ET+      ++S G+ P+ +TY +L+    K GR+   F I   ++
Sbjct: 558 GLCNNGRVEEA---ETILF---SMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMV 611

Query: 387 PSCFTPDAVTFTSLI 401
            +   P++  +++L+
Sbjct: 612 KNGCQPNSHIYSALL 626



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 164/355 (46%), Gaps = 36/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ + D M   +   P V ++ IL   L +    +    +F+++   GL P   T+N 
Sbjct: 251 DKAMKMLDEMAT-KACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNA 309

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN +CK G V   F +L  + +    P+  T+  L++ LC  S+  +A  L  ++   G
Sbjct: 310 LINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNG 369

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  TYN L++G C+ G   +A N+F  M +         EPD  T++ +IDGLCK  
Sbjct: 370 LLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAG------LEPDGFTFTALIDGLCKLG 423

Query: 251 ---------GSANFLGFSC-MASFSAL----------NKMAFYFP-LVRVQCL--CLNFL 287
                    GS    G S    +F+AL            + F F  +V  +CL     F 
Sbjct: 424 RLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFN 483

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
           C +D L K  KL  A  +   + + GL+P+VVT+ ILI G C  G+   +        + 
Sbjct: 484 CFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALS------LKML 537

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +R+   G  P++YTY I+IN  C  GRV     I   +     +P+  T+  L+K
Sbjct: 538 ERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVK 592



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 145/334 (43%), Gaps = 26/334 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  VF+ M      RP   +++IL   L +    +    L + +   G  P   TY +L
Sbjct: 181 EAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 240

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I   C +G       +L  +      P+  T+T LI  LC E +I EA  +F K+   G 
Sbjct: 241 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 300

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              + T+N LING C+ G  + A  L   M  GN      C+P+  TY+ +++GLC+ + 
Sbjct: 301 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN------CKPNIRTYNELMEGLCRVSK 354

Query: 252 S-ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           S   FL    +     L     Y  LV             DG CK  +L +A  +F S+ 
Sbjct: 355 SYKAFLLLRRVVDNGLLPDRVTYNILV-------------DGFCKEGQLNMAFNIFNSMN 401

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            AGL P+  T+  LI GLC  G++++         +   +   G+  D  T+  LI+  C
Sbjct: 402 SAGLEPDGFTFTALIDGLCKLGRLEQANG------ILGSMVKKGISLDEVTFTALIDGHC 455

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           KIG+      +F  ++ +     A TF   +  L
Sbjct: 456 KIGKAKDVCFLFENMVENRCLTTAHTFNCFLDAL 489



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 151/360 (41%), Gaps = 69/360 (19%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L  R S P    ++ L  CLAK         +++R+   G       Y  ++N  CK G 
Sbjct: 87  LGFRLSYP---CYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGF 143

Query: 141 VSHGFVVLGRILRSCF------------------------------------TPDAVTFT 164
           V    +   ++LR  F                                     P++VT++
Sbjct: 144 VQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYS 203

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
            LI  LC   R+ EA  L  ++   GC+    TY  LI   C  G T  A+ + +EMA  
Sbjct: 204 ILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 263

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC- 283
                  C P+  TY+ +ID LC+E                 + +    F  +    LC 
Sbjct: 264 ------ACVPNVHTYTILIDRLCREG---------------KIEEANGVFRKMLKHGLCP 302

Query: 284 --LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             + F  LI+G CK   +  A +L   + +    PN+ TYN L+ GLC       +K Y+
Sbjct: 303 GIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCR-----VSKSYK 357

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             FLL +R+   GL PD  TYNIL++ FCK G+++  F IF  +  +   PD  TFT+LI
Sbjct: 358 A-FLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 416



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 116/277 (41%), Gaps = 57/277 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++NIL     K    +   ++F  +N  GL PD +T+  LI+  CK+GR+     +
Sbjct: 372 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGI 431

Query: 148 LGRILRSCFTPDAVTFTSLI---------KDLC--------------------------A 172
           LG +++   + D VTFT+LI         KD+C                           
Sbjct: 432 LGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGK 491

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           + ++ EA A+  K+  +G    V T+  LI G CR G T ++L + E M          C
Sbjct: 492 DYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG------C 545

Query: 233 EPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
            P+  TY+ II+GLC       A  + FS M+SF        Y  LV+            
Sbjct: 546 SPNVYTYTIIINGLCNNGRVEEAETILFS-MSSFGVSPNHFTYAVLVKAH---------- 594

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
               K  +L  A ++  ++ + G  PN   Y+ L+ G
Sbjct: 595 ---VKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSG 628



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 136/325 (41%), Gaps = 26/325 (8%)

Query: 82  NMRPSRPPVTS--FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           NM  +R   T+  FN     L K    +   ++  ++   GL P   T+ ILI   C+ G
Sbjct: 469 NMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAG 528

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
             +    +L R+ ++  +P+  T+T +I  LC   R+ EA  +   +  FG   + FTY 
Sbjct: 529 ETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYA 588

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            L+    + G    A  +   M   NG     C+P++  YS ++ G      S   +G  
Sbjct: 589 VLVKAHVKAGRLDRAFQIVSTMVK-NG-----CQPNSHIYSALLSGFVL---SNTAIGAR 639

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            ++S   L+  +         CL  +   L+D       +  A ++   + + G+ P   
Sbjct: 640 ALSSTGDLDARSLSSEENDNNCLSSHVFRLMD-------VDHALKIRDEIKKCGV-PTED 691

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            YN L+ GLC +G++ E         L + +   GLFPD    +I I  +CK  +  +  
Sbjct: 692 LYNFLVVGLCKEGRIIEADQ------LTQDMVKHGLFPDKAISSI-IEHYCKTCKYDNCL 744

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
                +L + F P   ++  +I  L
Sbjct: 745 EFMKLVLDNKFVPSFASYCWVIHGL 769



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 111/288 (38%), Gaps = 34/288 (11%)

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
           C+   GR+    V++ R L        V      +D  +E+ +++       +   G  L
Sbjct: 34  CYDLDGRIQLLGVLVSRDLFGVAQKAVVLLIQECED--SENGVVKLMGALDGMTELGFRL 91

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
               Y+TL+  L +     VA  ++  M N     G       I Y T+++ LCK     
Sbjct: 92  SYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLG------GIDYRTVVNALCKN---- 141

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR-A 312
              GF   A       +   F L    C       L+   C+   L  A  +F+ + +  
Sbjct: 142 ---GFVQAAEMFCCKVLRLGFGLDTHVC-----TSLVLANCRRDDLGEAFRVFEKMSKEE 193

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
              PN VTY+ILI GLC  G+++E       F L + +   G  P   TY +LI   C I
Sbjct: 194 SCRPNSVTYSILIHGLCEAGRLEEA------FQLKQEMVEKGCQPSTRTYTVLIKAKCDI 247

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           G       +   +      P+  T+T LI       KI E N  FR++
Sbjct: 248 GMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKM 295


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 163/339 (48%), Gaps = 38/339 (11%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK---MGRVSHGFV 146
           + +FNI    L +    +      + +   G+ P+  TYN L++ +CK    G++     
Sbjct: 200 LNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEA 259

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            +  +L +   P+ VTF +LI   C +  +  A   F +++  G + ++ TYN+LINGLC
Sbjct: 260 FMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLC 319

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFS 265
             G    A++L+++M       G+  +P+ +TY+ +I+G CK+         F  ++   
Sbjct: 320 NNGKLEEAIDLWDKMV------GLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQE 373

Query: 266 ALNKMAFYFPLVRVQC----------LCLNFL------------CLIDGLCKISKLKIAR 303
            +  +  +  ++   C          LC + L            CLI GLC+   L+ A+
Sbjct: 374 LVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAK 433

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           EL   +   GL  +VVTYNILI GLC +   D++++ E    L   + + GL P+  TYN
Sbjct: 434 ELLNEMENKGLKGDVVTYNILIDGLCKN---DKSRNAEK---LLNEMFNLGLKPNHVTYN 487

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            L++ +C  G++ +   +  R+      P+ VT+  LIK
Sbjct: 488 TLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIK 526



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 142/310 (45%), Gaps = 24/310 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FN L     K ++       F+ +   GL P+  TYN LIN  C  G++     +
Sbjct: 271 PNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDL 330

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++     P+ VT+ +LI   C +  + EA  +F  +       +V T+NT+I+  C+
Sbjct: 331 WDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCK 390

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G      +L   M +     G++  P+  TY+ +I GLC++            A+   L
Sbjct: 391 EGMMEEGFSLCSSMLDE----GIL--PNVSTYNCLIAGLCRKQ--------DLQAAKELL 436

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N+M        ++   + +  LIDGLCK  K + A +L   +   GL PN VTYN L+ G
Sbjct: 437 NEMENK----GLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDG 492

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C +G++    +  T      R+      P++ TYN+LI  +CKI ++ +   +   +L 
Sbjct: 493 YCMEGKLKAALNVRT------RMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLE 546

Query: 388 SCFTPDAVTF 397
               P+  T+
Sbjct: 547 KGLNPNRTTY 556



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 127/279 (45%), Gaps = 24/279 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++N L   L      +  + L+ ++   GL P+  TYN LIN FCK   +     
Sbjct: 305 KPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATK 364

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   + +    P+ +TF ++I   C E  + E  +L + +   G   +V TYN LI GLC
Sbjct: 365 VFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLC 424

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R      A  L  EM N         + D +TY+ +IDGLCK   S N        +   
Sbjct: 425 RKQDLQAAKELLNEMENKG------LKGDVVTYNILIDGLCKNDKSRN--------AEKL 470

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           LN+M F   L       + +  L+DG C   KLK A  +   + +    PNVVTYN+LI+
Sbjct: 471 LNEM-FNLGLKPNH---VTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIK 526

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           G C   ++      E    L   +   GL P+  TY+I+
Sbjct: 527 GYCKINKL------EAANGLLNEMLEKGLNPNRTTYDIV 559



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 121/253 (47%), Gaps = 19/253 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ ++D M+ +   +P + ++N L     K K       +F  ++   L P+  T+N +
Sbjct: 326 EAIDLWDKMVGL-GLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTM 384

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ +CK G +  GF +   +L     P+  T+  LI  LC +  +  A  L  ++   G 
Sbjct: 385 IDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGL 444

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + DV TYN LI+GLC+   +  A  L  EM      F +  +P+ +TY+T++DG C E  
Sbjct: 445 KGDVVTYNILIDGLCKNDKSRNAEKLLNEM------FNLGLKPNHVTYNTLMDGYCMEG- 497

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                     A+ +   +M       R Q   + +  LI G CKI+KL+ A  L   +  
Sbjct: 498 -------KLKAALNVRTRMEKE----RKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLE 546

Query: 312 AGLMPNVVTYNIL 324
            GL PN  TY+I+
Sbjct: 547 KGLNPNRTTYDIV 559



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 147/332 (44%), Gaps = 32/332 (9%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDT--VLSLFKRLNLTGLFPDRYTYNILIN 133
           VF  +L +   RP  T+  I    LA  K+ +       F R    G      + N L++
Sbjct: 115 VFHSLL-LDGGRPGATALIIDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLS 173

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
              K  ++     V   +++     +  TF   I  LC   ++ +A      ++ +G   
Sbjct: 174 ALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISP 233

Query: 194 DVFTYNTLINGLCR---TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           +V TYNTL++G C+    G    A    +EM AN       +C P+ +T++T+IDG CK+
Sbjct: 234 NVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANK------IC-PNEVTFNTLIDGFCKD 286

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              A     +   +F  + K      +V        +  LI+GLC   KL+ A +L+  +
Sbjct: 287 ENVA-----AAKKAFEEMQKQGLKPNIV-------TYNSLINGLCNNGKLEEAIDLWDKM 334

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              GL PN+VTYN LI G C    M E         +F  ++   L P++ T+N +I+ +
Sbjct: 335 VGLGLKPNIVTYNALINGFCKKKMMKEATK------VFDDVSKQELVPNVITFNTMIDAY 388

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK G +  GF +   +L     P+  T+  LI
Sbjct: 389 CKEGMMEEGFSLCSSMLDEGILPNVSTYNCLI 420


>gi|255661010|gb|ACU25674.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
          Length = 376

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 158/325 (48%), Gaps = 25/325 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+    SR  V SFNI+   L      D V S+++ +   G   D  TY IL++ FCK G
Sbjct: 50  MMGKEGSRS-VASFNIMMRGLFDNGRVDEVNSIWELMKKGGYVEDSITYGILVHGFCKNG 108

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            ++    +L    R     DA+ +  +I  LC E+++ +A ++   +   GC+ +   YN
Sbjct: 109 YINKSLHLLEIXERKGRXXDALAYXPMINGLCKETKLEKAVSVLNGMIQSGCKPNTHVYN 168

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LINGL     +  A+ +F EM   +      C P  +TYS +I+GLCK           
Sbjct: 169 ALINGLIGASKSEDAIRVFREMGFPH------CSPTIVTYSILINGLCKS---------- 212

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
               FS    +        +    + +  L+ GLC   K+++A +L+  + + G  P+V 
Sbjct: 213 --ERFSEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDVQ 270

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            +NILI GLC+   + +T+H  +++L   R N +   P+L T+N L+  F K G + +  
Sbjct: 271 MHNILIHGLCS---VAKTQHALSLYLDMNRWNCS---PNLVTHNTLMEGFYKDGDIRNAL 324

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
           V++ RIL +   PD +++   +K L
Sbjct: 325 VMWARILKNELQPDIISYNITLKGL 349



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 87  RPPVTSFNILFGCL---AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           +P V   NIL   L   AKT+H    LSL+  +N     P+  T+N L+  F K G + +
Sbjct: 266 KPDVQMHNILIHGLCSVAKTQH---ALSLYLDMNRWNCSPNLVTHNTLMEGFYKDGDIRN 322

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
             V+  RIL++   PD +++   +K LC+ +RI +A
Sbjct: 323 ALVMWARILKNELQPDIISYNITLKGLCSCNRISDA 358



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 56/119 (47%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++++L   L      +  L L+ ++   G  PD   +NILI+  C + +  H   +
Sbjct: 232 PSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVAKTQHALSL 291

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              + R   +P+ VT  +L++    +  I  A  ++ ++     + D+ +YN  + GLC
Sbjct: 292 YLDMNRWNCSPNLVTHNTLMEGFYKDGDIRNALVMWARILKNELQPDIISYNITLKGLC 350



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 7/113 (6%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++G  +  ++K   EL++ + + G   +V ++NI++RGL ++G++DE     +++ L K
Sbjct: 31  MLNGFYRAGRIKDCFELWEMMGKEG-SRSVASFNIMMRGLFDNGRVDEV---NSIWELMK 86

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +    G   D  TY IL++ FCK G ++    +           DA+ +  +I
Sbjct: 87  K---GGYVEDSITYGILVHGFCKNGYINKSLHLLEIXERKGRXXDALAYXPMI 136


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 159/344 (46%), Gaps = 38/344 (11%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R + P V ++NIL  C  +        +LF R   TGL  D    NIL+ C C   R   
Sbjct: 113 RVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDD 172

Query: 144 GF-VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL--RVFGCELDVFTYNT 200
              V+L R+      PD +++++++K LC +SR   A  L   +  +  GC  +V +YNT
Sbjct: 173 AVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNT 232

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG--------- 251
           +I+G  R G    A NLF EM     + GVV  PD +TYS+ ID LCK            
Sbjct: 233 VIHGFFREGEVSKACNLFHEMM----QQGVV--PDVVTYSSYIDALCKARAMDKAELVLR 286

Query: 252 -------SANFLGFSCM-ASFSALNKM----AFYFPLVRVQCLCLNFLC--LIDGLCKIS 297
                    + + ++CM   +S L +       +  + R   +   F C   +  LCK  
Sbjct: 287 QMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHG 346

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           K K A E F S+   G  P++VTY++L+ G   +G + +      +  LF  +   G+  
Sbjct: 347 KSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVD------MLNLFNSMEGNGIVA 400

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           D   YNILI+ + K G +    +IF ++      PDA T+ ++I
Sbjct: 401 DHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVI 444



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/449 (23%), Positives = 180/449 (40%), Gaps = 78/449 (17%)

Query: 17  LSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEAL-- 74
           L R P   +  +  SY T   +L    + + +L+  L    K SG      ++ N  +  
Sbjct: 178 LHRMPELGVEPDTISYSTVLKSLCEDSRSQRALD-LLHTMVKKSGGCSPNVVSYNTVIHG 236

Query: 75  ----------CVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
                     C   + +  +   P V +++     L K +  D    + +++   G  PD
Sbjct: 237 FFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPD 296

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
           + TYN +I+ +  +G+      +   + R    PD  T  S +  LC   +  EAA  F 
Sbjct: 297 KVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFD 356

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG------------------ 226
            +   G + D+ TY+ L++G    G+ +  LNLF  M  GNG                  
Sbjct: 357 SMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSM-EGNGIVADHSVYNILIDAYGKR 415

Query: 227 --------------EFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMA 271
                         E GV+  PDA TY T+I    +    A+ +  F+ M +        
Sbjct: 416 GMMDEAMLIFTQMQERGVM--PDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTI 473

Query: 272 FYFPLVRVQCLCLN-----------------------FLCLIDGLCKISKLKIARELFQS 308
            Y  L++  C+  N                       F  +I+ LCK  ++  A+++F  
Sbjct: 474 VYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDL 533

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G  P+V+T+N LI G    G+M      E  F +   + S G+ PD+ TY+ L++ 
Sbjct: 534 VIHIGERPDVITFNSLIDGYGLVGKM------EKAFGVLDAMISVGIEPDVVTYSALLDG 587

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           +C+ GR+  G ++F  +L     P  +T+
Sbjct: 588 YCRNGRIDDGLILFREMLSKGVKPTTITY 616



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 141/333 (42%), Gaps = 24/333 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M++    RP    FN +   L K         +F  +   G  PD  T+N LI+ +  +G
Sbjct: 498 MMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVG 557

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++   F VL  ++     PD VT+++L+   C   RI +   LF ++   G +    TY 
Sbjct: 558 KMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYG 617

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            +++GL   G T+ A  +  EM     E G     D  T   I+ GLC+     N     
Sbjct: 618 IILHGLFNDGRTVGAKKMCHEMI----ESGTTM--DISTCGIILGGLCR-----NNCDDE 666

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            +A F  L  M   F +  +         +ID + K+ K + A ELF S+   GL+PN  
Sbjct: 667 AIALFKKLGAMNVKFNIAIIN-------TMIDAMYKVRKREEANELFDSISATGLVPNAS 719

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY ++I  L  +G ++E  +      +F  +  +G  P     N +I    + G +S   
Sbjct: 720 TYGVMITNLLKEGSVEEADN------MFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAG 773

Query: 380 VIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
               ++     + +A T + ++ +      +R+
Sbjct: 774 NYLSKVDGKTISLEASTASLMLSLFSRKGKYRE 806



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 125/301 (41%), Gaps = 65/301 (21%)

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA- 180
            P   TYNIL++C C+  R + GF + GR L++    D +    L+K LC   R  +A  
Sbjct: 116 LPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVN 175

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
            L  ++   G E D  +Y+T++  LC    +  AL+L   M   +G     C P+ ++Y+
Sbjct: 176 VLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGG----CSPNVVSYN 231

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           T+I G  +E                                             ++SK  
Sbjct: 232 TVIHGFFREG--------------------------------------------EVSK-- 245

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A  LF  + + G++P+VVTY+  I  LC    MD+ +      L+ +++ S G  PD  
Sbjct: 246 -ACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAE------LVLRQMISNGFEPDKV 298

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL-------EINSFFRQV 413
           TYN +I+ +  +G+      +F  +      PD  T  S +  L       E   FF  +
Sbjct: 299 TYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSM 358

Query: 414 A 414
           A
Sbjct: 359 A 359


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 158/335 (47%), Gaps = 27/335 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ +F  M   + S P   ++NIL   L K    +  +SL   +   G  P   TY  L
Sbjct: 109 EAMEIFREM-EEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTL 167

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ FC  GRV     +L  +     TP+ VT+T+LI+ LC    +  A  +  ++++ G 
Sbjct: 168 IHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGN 227

Query: 192 EL--DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           E   +V TY  LI+GLC+ G   + +   +EM          C P+  TY+ +I GLC++
Sbjct: 228 ECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISG------CFPNNATYTALIHGLCQK 281

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
               +FL  + +     LN+M      +  +   + +  LIDGLCK+ +L  ARE+   +
Sbjct: 282 G---SFLEAAVL-----LNEMV----AIGCELDVVIYNSLIDGLCKMGELDFAREMQILM 329

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G+ P+V TY  LI+GLC+ G +DE         L + + + G+ P+  TY  LIN F
Sbjct: 330 VEKGVAPDVFTYTSLIQGLCDAGLLDE------ALGLMQEMRAKGIVPNSVTYTTLINGF 383

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +  R      +   +  +   P    +  L K L
Sbjct: 384 TQADRTDHALQLVNEMKSNGLMPAGDIYKILFKSL 418


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 147/329 (44%), Gaps = 25/329 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  +FD ML  R   P V +FN L   + K    ++  +L   +   G+ PD YTY   +
Sbjct: 263 ARNMFDEMLR-RGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFM 321

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              CK GR+     +   +      P+ V FT+LI   C E  +     L  ++   G +
Sbjct: 322 QGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIK 381

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+  YN L NGLCR      A ++ EEM N NG      +PD +TY+T+IDG CKE   
Sbjct: 382 TDLVAYNALANGLCRVRDLKAANDIVEEMRN-NG-----LKPDKVTYTTLIDGFCKEG-- 433

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                           +M        V    + +  LI GL K  +   +  +   +  A
Sbjct: 434 ----------ELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEA 483

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           GL P+  TY ++I   C +  +      +T F L K + + G  P + TYN+++N FC +
Sbjct: 484 GLEPDNTTYTMVIDAFCKNSDV------KTGFKLLKEMQNKGRKPGVVTYNVVMNGFCIL 537

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G++ +  ++   +L     PD +T+  L+
Sbjct: 538 GQMKNADMLLNAMLNIGVCPDDITYNILL 566



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 134/290 (46%), Gaps = 24/290 (8%)

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
            G+ P+   +N+L+    + G+++    +   +LR    P  VTF +L+  +C  S +  
Sbjct: 238 AGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNS 297

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A AL   +   G   DV+TY   + GLC+ G    A+ +FEEM     E GV   P+ + 
Sbjct: 298 ANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMR----ERGV--NPNTVV 351

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           ++T+ID  CKE   A        A      +MA     ++   +  N   L +GLC++  
Sbjct: 352 FTTLIDAHCKEGNVA--------AGLELHREMATRG--IKTDLVAYN--ALANGLCRVRD 399

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           LK A ++ + +   GL P+ VTY  LI G C +G++D          + + ++  G+  D
Sbjct: 400 LKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELD------MAMEMKQEMSDEGVALD 453

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
             TY  LI+   K GR      I   ++ +   PD  T+T +I     NS
Sbjct: 454 EVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNS 503



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 146/346 (42%), Gaps = 70/346 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    FN+L   + ++    +  ++F  +   G+ P   T+N L++  CK   ++    +
Sbjct: 242 PEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANAL 301

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR---------VF--------- 189
            G + ++   PD  T+ + ++ LC   RI +A  +F ++R         VF         
Sbjct: 302 RGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCK 361

Query: 190 -----------------GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
                            G + D+  YN L NGLCR      A ++ EEM N NG      
Sbjct: 362 EGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRN-NG-----L 415

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMAS--------------FSALNKMAFYFPLVR 278
           +PD +TY+T+IDG CKE      +      S               S L+K        R
Sbjct: 416 KPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSER 475

Query: 279 VQCLCLN---------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           + C  +          +  +ID  CK S +K   +L + +   G  P VVTYN+++ G C
Sbjct: 476 ILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFC 535

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
             GQM      +   +L   + + G+ PD  TYNIL++  CK G+V
Sbjct: 536 ILGQM------KNADMLLNAMLNIGVCPDDITYNILLDGHCKHGKV 575



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 133/301 (44%), Gaps = 28/301 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F+ M   R   P    F  L     K  +    L L + +   G+  D   YN 
Sbjct: 331 QDAVEMFEEMRE-RGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNA 389

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L N  C++  +     ++  +  +   PD VT+T+LI   C E  +  A  +  ++   G
Sbjct: 390 LANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEG 449

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             LD  TY TLI+GL ++G ++ +  +  EM     E G+  EPD  TY+ +ID  CK +
Sbjct: 450 VALDEVTYTTLISGLSKSGRSVDSERILCEMM----EAGL--EPDNTTYTMVIDAFCKNS 503

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                 GF  +       +          +   + +  +++G C + ++K A  L  ++ 
Sbjct: 504 DVKT--GFKLLKEMQNKGR----------KPGVVTYNVVMNGFCILGQMKNADMLLNAML 551

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+ +TYNIL+ G C  G++ + +  ++         + G+  D   Y  LIN F 
Sbjct: 552 NIGVCPDDITYNILLDGHCKHGKVRDAEELKS---------AKGMVSDFGLYTSLINEFV 602

Query: 371 K 371
           K
Sbjct: 603 K 603



 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 29/140 (20%)

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY---------E 341
           D + ++  +  A   +  L  AG+ P    +N+L+R +   G++   ++           
Sbjct: 217 DLMNRLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVP 276

Query: 342 TVFLLFKRLNS--------------------TGLFPDLYTYNILINCFCKIGRVSSGFVI 381
              + F  L S                     G+ PD+YTY   +   CK GR+     +
Sbjct: 277 PTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEM 336

Query: 382 FGRILPSCFTPDAVTFTSLI 401
           F  +      P+ V FT+LI
Sbjct: 337 FEEMRERGVNPNTVVFTTLI 356


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 149/353 (42%), Gaps = 36/353 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL  F  M   R   P   S N L    A+    D +   FK +   G  P  +TYNI+
Sbjct: 81  EALQCFSKMKRCR-VFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIM 139

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+C CK G +     +   +      PD VT+ S+I       R+ +    F +++   C
Sbjct: 140 IDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSC 199

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           E DV TYNTLIN  C+ G     L  F EM           +P+ ++YST++D  CKE  
Sbjct: 200 EPDVITYNTLINCFCKFGKLPKGLEFFREMKQSG------LKPNVVSYSTLVDAFCKEDM 253

Query: 252 SANFLGF-----------------SCMASFSALNKMAFYFPL------VRVQCLCLNFLC 288
               L F                 S + ++  +  ++  F L      V V+   + +  
Sbjct: 254 MQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTA 313

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LIDGLC + ++K A ELF  +  AG++PN+ +Y  LI G      MD          L  
Sbjct: 314 LIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDR------ALELLD 367

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   G+ PDL  Y   I   C + ++ +  V+   +       +   +T+L+
Sbjct: 368 EMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLM 420



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 159/403 (39%), Gaps = 85/403 (21%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGDI +     A  +F+ M   R   P   ++N +     K    D  +  F+ +     
Sbjct: 146 EGDIEA-----ASGLFEEM-KFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSC 199

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TYN LINCFCK G++  G      + +S   P+ V++++L+   C E  + +A  
Sbjct: 200 EPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALK 259

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
            +  +R  G   +  TY +L++  C+ G+   A  L +EM+    E+ VV      TY+ 
Sbjct: 260 FYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVV------TYTA 313

Query: 242 IIDGLC-----KEAGSANFLGFSCMASFSALNKMAFYFPLVR------------------ 278
           +IDGLC     KEA       F  M +   +  +A Y  L+                   
Sbjct: 314 LIDGLCDVERIKEAEEL----FGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEM 369

Query: 279 ----VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN----------------- 317
               ++   L +   I  LC + K++ A+ +   +   G+  N                 
Sbjct: 370 KGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENP 429

Query: 318 ------------------VVTYNILIRGLCNDGQMDETKHYETVFLLFKRL-NSTGLFPD 358
                              VT+ +LI GLC +  + +   Y      F R+ N  GL  +
Sbjct: 430 SEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDY------FGRISNDFGLQAN 483

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              Y  +I+  CK  +V +   +F ++      PD   +TSLI
Sbjct: 484 AAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLI 526



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 139/323 (43%), Gaps = 36/323 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V S++ L     K       L  +  +   GL P+ +TY  L++ +CK+G +S  F 
Sbjct: 235 KPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFR 294

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   + +     + VT+T+LI  LC   RI EA  LF K+   G   ++ +Y  LI+G  
Sbjct: 295 LADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFV 354

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC---------------KEAG 251
           +  +   AL L +EM       G   +PD + Y T I  LC               +E G
Sbjct: 355 KAKNMDRALELLDEMK------GRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKG 408

Query: 252 -SAN-FLGFSCMASF------SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
             AN F+  + M ++      S    +      + ++   + F  LIDGLCK   +  A 
Sbjct: 409 IKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAI 468

Query: 304 ELFQSLPRA-GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
           + F  +    GL  N   Y  +I GLC + Q+      E    LF+++   GL PD   Y
Sbjct: 469 DYFGRISNDFGLQANAAIYTAMIDGLCKEDQV------EAATTLFEQMAQKGLVPDRTAY 522

Query: 363 NILINCFCKIGRVSSGFVIFGRI 385
             LI+   K G V     +  ++
Sbjct: 523 TSLIDGKLKQGNVVQALALRDKM 545



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 5/112 (4%)

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           T+ +LI+  CK   VS      GRI        +A  +T++I  LC E ++  A  LF +
Sbjct: 450 TFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQ 509

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA----NGNGEFGVVCE 233
           +   G   D   Y +LI+G  + G+ + AL L ++MA         FG +C+
Sbjct: 510 MAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVESGARFGDLCQ 561



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  L   L +    + A + F  + R  + P   + N L+      G+ D  K +     
Sbjct: 66  FDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRF----- 120

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            FK +   G  P ++TYNI+I+C CK G + +   +F  +      PD VT+ S+I
Sbjct: 121 -FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMI 175



 Score = 43.1 bits (100), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
             +F +L   L K K     +  F R+ N  GL  +   Y  +I+  CK  +V     + 
Sbjct: 448 AVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLF 507

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
            ++ +    PD   +TSLI     +  +++A AL  K+   G E
Sbjct: 508 EQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVE 551


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 159/335 (47%), Gaps = 32/335 (9%)

Query: 72  EALCVFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           E + V+ ++  M   +  P V +FNIL   L     +     L +++  +G  P   TYN
Sbjct: 173 EDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYN 232

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +++ +CK GR      +L  +       D  T+  LI DLC  +R  +   L   +R  
Sbjct: 233 TVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKR 292

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
               +  TYNTL+NG    G  ++A  L  EM      FG+   P+ +T++ +IDG   E
Sbjct: 293 MIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLT----FGL--SPNHVTFNALIDGHISE 346

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC---LNFLCLIDGLCKISKLKIARELF 306
                        +F    KM   F ++  + L    +++  L+DGLCK ++  +AR  +
Sbjct: 347 ------------GNFKEALKM---FHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFY 391

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             + R G+    +TY  +I GLC +G +DE        ++   ++  G+ PD+ TY+ LI
Sbjct: 392 MRMKRNGVCVGRITYTGMIDGLCKNGFLDEA------VVMLNEMSKDGIDPDIVTYSALI 445

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N FC++GR+ +   I  RI     +P+ + +++LI
Sbjct: 446 NGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLI 480



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 143/342 (41%), Gaps = 29/342 (8%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G I+     EAL +F +M+  +       S+ +L   L K   +D     + R+   G+
Sbjct: 341 DGHISEGNFKEALKMF-HMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGV 399

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
              R TY  +I+  CK G +    V+L  + +    PD VT+++LI   C   R+  A  
Sbjct: 400 CVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKE 459

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYS 240
           +  ++   G   +   Y+TLI   CR G     + ++E M   GN        PD  T++
Sbjct: 460 IVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGN-------TPDHFTFN 512

Query: 241 TIIDGLCKEAGSANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
            ++  LCK    A    F  CM S   L                ++F CLI+G     + 
Sbjct: 513 VLVTSLCKAGKVAEAEEFMRCMTSDGILPN-------------AVSFDCLINGYGSSGEG 559

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A  +F  + + G  P   TY  L++GLC  G +   + +       K L +     D 
Sbjct: 560 LKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKF------LKSLQNVPAAVDT 613

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              N LI   CK G +     +FG ++     PD+ T+TSLI
Sbjct: 614 VMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLI 655



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 157/334 (47%), Gaps = 52/334 (15%)

Query: 97  FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF 156
            GCL +T      + +++ + L G  PD +T+N+L+   CK G+V+     +  +     
Sbjct: 486 MGCLKET------IRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 539

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
            P+AV+F  LI    +    ++A ++F ++   G     FTY +L+ GLC+ GH I A  
Sbjct: 540 LPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEK 599

Query: 217 LFEEMAN--------------------GNGE-----FGVVCE----PDAITYSTIIDGLC 247
             + + N                    GN +     FG + +    PD+ TY+++I GLC
Sbjct: 600 FLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLC 659

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           ++  +   + F+  A             LV  + +   + C +DG+ K  + K      Q
Sbjct: 660 RKGKTVIAILFAKEAEARG--------NLVPNKVM---YTCFVDGMFKAGQWKAGFYFRQ 708

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            + + GL  +VVT N +I G    G++++T       LLF+ + +    P+L TYNIL++
Sbjct: 709 QMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHD-----LLFE-MGNQNQGPNLTTYNILLH 762

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + K   VS+ F+++  ++ S   PD +T  S+I
Sbjct: 763 GYSKRKHVSTSFMLYRSMILSGILPDKLTCYSII 796



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 179/440 (40%), Gaps = 72/440 (16%)

Query: 30  PSYPTTTATLRLTVK--DRASLEQFLKERCKSSGEGDITS--ITPNEALCVFD------- 78
           PS  T  A L   VK  +  S+  FLKE  K     D+ +  I  N  LC          
Sbjct: 156 PSVYTCNAILGSIVKSCEDVSVWSFLKEMLKRKICPDVATFNILIN-VLCAEGSFKKSSY 214

Query: 79  YMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
            M  M  S   P + ++N +     K   +   + L   +NL G+  D  TYN+LI+  C
Sbjct: 215 LMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLC 274

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           +  R + G+++L  + +    P+ VT+ +L+     E +++ A  L  ++  FG   +  
Sbjct: 275 RSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHV 334

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           T+N LI+G    G+   AL +F  M    G  G       ++Y  ++DGLCK A      
Sbjct: 335 TFNALIDGHISEGNFKEALKMFH-MMEAKGLIGT-----EVSYGVLLDGLCKNAEFDLAR 388

Query: 257 GF--------SCMASFS------ALNKMAFYFPLV---------RVQCLCLNFLCLIDGL 293
           GF         C+   +       L K  F    V          +    + +  LI+G 
Sbjct: 389 GFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGF 448

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET-KHYETVFL------- 345
           C++ +LK A+E+   + R GL PN + Y+ LI   C  G + ET + YE + L       
Sbjct: 449 CRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDH 508

Query: 346 ---------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
                                  + + S G+ P+  +++ LIN +   G     F +F  
Sbjct: 509 FTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDE 568

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           +      P   T+ SL+K L
Sbjct: 569 MTKVGHHPTFFTYGSLLKGL 588



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 134/302 (44%), Gaps = 35/302 (11%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L K    D  + +   ++  G+ PD  TY+ LIN FC++GR+     ++ RI R   +P+
Sbjct: 413 LCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPN 472

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            + +++LI + C    + E   ++  + + G   D FT+N L+  LC+ G    A    E
Sbjct: 473 GIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEA----E 528

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           E        G++  P+A+++  +I+G     GS+   G    + F  + K+  +      
Sbjct: 529 EFMRCMTSDGIL--PNAVSFDCLINGY----GSSG-EGLKAFSVFDEMTKVGHHPTF--- 578

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                 +  L+ GLCK   L  A +  +SL       + V  N LI  +C  G +D+   
Sbjct: 579 ----FTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKA-- 632

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV-----------SSGFVIFGRILPS 388
                 LF  +    + PD +TY  LI+  C+ G+            + G ++  +++ +
Sbjct: 633 ----VSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMYT 688

Query: 389 CF 390
           CF
Sbjct: 689 CF 690



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 151/367 (41%), Gaps = 68/367 (18%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP------------------------ 123
            P +T++NIL    +K KH  T   L++ + L+G+ P                        
Sbjct: 752  PNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGICESNMLEIGLKI 811

Query: 124  -----------DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
                       DR+T+N+LI+  C  G ++  F ++  +     + D  T  +++  L  
Sbjct: 812  LKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNR 871

Query: 173  ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
              R  E+  +  ++   G   +   Y  L+NGLCR G    A  + EEM         +C
Sbjct: 872  NHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHK-----IC 926

Query: 233  EPDAITYSTIIDGL--CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
             P+ +  S ++  L  C +A  A+ L         ++ KM    P +       +F  L+
Sbjct: 927  PPN-VAESAMVRALAKCGKADEASLL-------LRSMLKMKL-VPTIA------SFTTLM 971

Query: 291  DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
               CK   +  A EL   +   GL  ++V+YN+LI GLC  G M         F LF+ +
Sbjct: 972  HLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDM------AIAFELFEEM 1025

Query: 351  NSTGLFPDLYTYNILINCFCKIGRVSSGF-VIFGRILPSCFTPDAVTFTSLI---KILEI 406
               G   ++ TY  L+      G   SG  +I   +L   F   A++F  +I   + + +
Sbjct: 1026 KRDGFLANVTTYKALVGGILSQGTEFSGTDIILKDLLARGFIT-AMSFNHMINFPQQISV 1084

Query: 407  NSFFRQV 413
            N++ + +
Sbjct: 1085 NAYLKHL 1091



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 132/359 (36%), Gaps = 70/359 (19%)

Query: 59  SSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL 118
           SSGEG        +A  VFD M  +    P   ++  L   L K  H        K L  
Sbjct: 555 SSGEGL-------KAFSVFDEMTKV-GHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQN 606

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
                D    N LI   CK G +     + G +++    PD+ T+TSLI           
Sbjct: 607 VPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLI----------- 655

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
                                   +GLCR G T++A+ LF + A   G       P+ + 
Sbjct: 656 ------------------------SGLCRKGKTVIAI-LFAKEAEARGNL----VPNKVM 686

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+  +DG+ K         F        ++K+     +V           +IDG  ++ K
Sbjct: 687 YTCFVDGMFKAGQWKAGFYFR-----QQMDKLGLTRDVVTTN-------AMIDGYSRMGK 734

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           ++   +L   +      PN+ TYNIL+ G        + KH  T F+L++ +  +G+ PD
Sbjct: 735 IEKTHDLLFEMGNQNQGPNLTTYNILLHGY------SKRKHVSTSFMLYRSMILSGILPD 788

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL----EINSFFRQV 413
             T   +I   C+   +  G  I    +      D  TF  LI       EIN  F  V
Sbjct: 789 KLTCYSIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMV 847



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/352 (19%), Positives = 138/352 (39%), Gaps = 52/352 (14%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P+       N L   + K+ + D  +SLF  +    + PD +TY  LI+  C+ G+    
Sbjct: 608 PAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIA 667

Query: 145 FVVLGRI-LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
            +       R    P+ V +T  +  +    +         ++   G   DV T N +I+
Sbjct: 668 ILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMID 727

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMA 262
           G  R G      +L  EM N N        P+  TY+ ++ G  K    S +F+ +  M 
Sbjct: 728 GYSRMGKIEKTHDLLFEMGNQNQG------PNLTTYNILLHGYSKRKHVSTSFMLYRSMI 781

Query: 263 SFSAL-NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
               L +K+  Y               +I G+C+ + L+I  ++ ++    G+  +  T+
Sbjct: 782 LSGILPDKLTCY--------------SIILGICESNMLEIGLKILKAFICRGVEVDRHTF 827

Query: 322 NILIRGLCNDGQ-----------------------------MDETKHYETVFLLFKRLNS 352
           N+LI   C +G+                             ++    ++   ++   ++ 
Sbjct: 828 NMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSK 887

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            G+ P+   Y  L+N  C++G + + FV+   ++     P  V  +++++ L
Sbjct: 888 QGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRAL 939



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 129/314 (41%), Gaps = 47/314 (14%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  F I    L + + YD    + K L+L                    G+ S  F  L 
Sbjct: 72  VQLFCITTHILVRARMYDPARHILKELSLMS------------------GKSSFVFGALM 113

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              R C +  +V F  LI+    E  I ++  +F  + ++G    V+T N ++  + ++ 
Sbjct: 114 ATYRLCNSNPSV-FDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSC 172

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
             +   +  +EM         +C PD  T++ +I+ LC E         S   S   + K
Sbjct: 173 EDVSVWSFLKEMLKRK-----IC-PDVATFNILINVLCAEG--------SFKKSSYLMQK 218

Query: 270 M--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           M  + Y P +      + +  ++   CK  + K A EL   +   G+  +V TYN+LI  
Sbjct: 219 MEKSGYAPTI------VTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHD 272

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC   +  +       +LL + +    + P+  TYN L+N F   G+V     +   +L 
Sbjct: 273 LCRSNRSAKG------YLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLT 326

Query: 388 SCFTPDAVTFTSLI 401
              +P+ VTF +LI
Sbjct: 327 FGLSPNHVTFNALI 340



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 1/134 (0%)

Query: 70   PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
             +EA  +   ML M+   P + SF  L     K  +    L L   ++  GL  D  +YN
Sbjct: 945  ADEASLLLRSMLKMKLV-PTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYN 1003

Query: 130  ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +LI   C  G ++  F +   + R  F  +  T+ +L+  + ++        +  K  + 
Sbjct: 1004 VLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALVGGILSQGTEFSGTDIILKDLLA 1063

Query: 190  GCELDVFTYNTLIN 203
               +   ++N +IN
Sbjct: 1064 RGFITAMSFNHMIN 1077


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 168/356 (47%), Gaps = 39/356 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F  M++M+  +P    + ++ G L K    D   S F+R+  +G  PD+ TY +
Sbjct: 104 DKALQIFHQMIDMK-VKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTV 162

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++   K  +   G  +   +L    +P+ VT+ +++   C   RI +A +L  +L+  G
Sbjct: 163 LVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTG 222

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
                  Y+TLI+GLC+      A  LF EMA G+ +       D I Y++ I GLCK  
Sbjct: 223 RSPSGSLYSTLIDGLCKHDRHDEARELF-EMAAGDVQ-------DVIVYTSFISGLCKAG 274

Query: 249 -------------EAGSA------NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC- 288
                        EAG A      N + +S                 +  +C+    +C 
Sbjct: 275 KLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCT 334

Query: 289 -LIDGLCKISKLKIARELFQSLPRAG-LMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
            L+DGLCK  +++ A  + + +   G   P+VVTY+ +I GLC   ++D+       +++
Sbjct: 335 VLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDA------YVV 388

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            +++   G  PD+ TY  +I+ FCK+GR+     +F R+       D V +  LI+
Sbjct: 389 LQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIR 444



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 147/344 (42%), Gaps = 50/344 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +F  L   L +    D  L +F ++    + PD + Y ++I   CK+ ++      
Sbjct: 85  PTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASY 144

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R+++S   PD VT+T L+  L    +  +   +F ++   G   ++ TY T++NG C+
Sbjct: 145 FERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCK 204

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    AL+L   +  G G       P    YST+IDGLCK            MA+    
Sbjct: 205 AGRIDQALSLMRRL-KGTGR-----SPSGSLYSTLIDGLCKHDRHDEARELFEMAAGDVQ 258

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           + +               +   I GLCK  KL  A+ +   +  AG  P+ V+YN++I  
Sbjct: 259 DVIV--------------YTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYS 304

Query: 328 LCNDGQMDETKH-----------------------------YETVFLLFKRLNSTG-LFP 357
           LC D ++ E K                               E   ++ +R+  TG   P
Sbjct: 305 LCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAP 364

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + TY+ +I+  CK  R+   +V+  ++  +   PD VT+T++I
Sbjct: 365 SVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAII 408



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 146/342 (42%), Gaps = 55/342 (16%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F+ ML+ +   P + ++  +     K    D  LSL +RL  TG  P    Y+ LI+  
Sbjct: 179 IFEEMLS-KGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGL 237

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK  R      +    + +    D + +TS I  LC   ++ EA A+  K+   GC  D 
Sbjct: 238 CKHDRHDEARELFE--MAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDP 295

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV-VC---------------------- 232
            +YN +I  LC+      A  L ++        GV VC                      
Sbjct: 296 VSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILER 355

Query: 233 -------EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--C 283
                   P  +TYS +IDGLCK    A+ L      ++  L KM       R  C+   
Sbjct: 356 MLETGDRAPSVVTYSAVIDGLCK----ADRLD----DAYVVLQKMR------RAGCVPDV 401

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           + +  +ID  CK+ +L  ARELFQ +   G   +VV YNILIRG C   ++DE       
Sbjct: 402 VTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEA------ 455

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
             + + +   G+ P++ + + +++  CK  RV    ++  ++
Sbjct: 456 IAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKM 497



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 135/315 (42%), Gaps = 41/315 (13%)

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           +FK   +T   PD +TY  LI  FCK  ++     +LG +  +  TP  VTF SLI+ LC
Sbjct: 39  VFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLC 98

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
             +   +A  +F ++     + D F Y  +I  LC+     +A + FE M          
Sbjct: 99  ELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSG------ 152

Query: 232 CEPDAITYSTIIDGL---CKEAGSANFLGFSCMASFSALNKMAFYFPLV-------RV-Q 280
           C PD +TY+ ++  L   CK         F  M S     ++  Y  +V       R+ Q
Sbjct: 153 CLPDKVTYTVLVHSLFKACKWEQGHQI--FEEMLSKGHSPELVTYATVVNGYCKAGRIDQ 210

Query: 281 CLCLN--------------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            L L               +  LIDGLCK  +   ARELF+    AG + +V+ Y   I 
Sbjct: 211 ALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELFEMA--AGDVQDVIVYTSFIS 268

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G++DE K          ++   G  PD  +YN++I   CK  RVS    +  + +
Sbjct: 269 GLCKAGKLDEAKAVHV------KMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAM 322

Query: 387 PSCFTPDAVTFTSLI 401
                P     T L+
Sbjct: 323 ERKCMPGVPVCTVLV 337



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 123/286 (43%), Gaps = 34/286 (11%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G   + YT N L+  F   G     + V    L + F PD  T+ +LI+  C   +I +A
Sbjct: 12  GFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQA 71

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L  +++  G    + T+ +LI  LC    T  AL +F +M +      +  +PDA  Y
Sbjct: 72  VNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMID------MKVKPDAFLY 125

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL----NFLCLIDGLCK 295
           + +I  LCK                + L+  A YF  + VQ  CL     +  L+  L K
Sbjct: 126 TVVIGHLCK---------------INKLDLAASYFERM-VQSGCLPDKVTYTVLVHSLFK 169

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
             K +   ++F+ +   G  P +VTY  ++ G C  G++D+         L +RL  TG 
Sbjct: 170 ACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQA------LSLMRRLKGTGR 223

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            P    Y+ LI+  CK  R      +F   + +    D + +TS I
Sbjct: 224 SPSGSLYSTLIDGLCKHDRHDEARELFE--MAAGDVQDVIVYTSFI 267



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 72/151 (47%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  + + ML      P V +++ +   L K    D    + +++   G  PD  TY  
Sbjct: 347 EEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTA 406

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+ FCK+GR+     +  R+       D V +  LI+  C  +++ EA A+  ++   G
Sbjct: 407 IIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRG 466

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            + +V + +T+++GLC+      A  L E+M
Sbjct: 467 IQPNVVSLSTIVDGLCKESRVEEARLLMEKM 497



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LI G CK  ++  A  L   +  AG+ P +VT+  LIR LC      E    +    +F 
Sbjct: 58  LIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLC------ELNFTDKALQIFH 111

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++    + PD + Y ++I   CKI ++      F R++ S   PD VT+T L+  L
Sbjct: 112 QMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSL 167



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R G   N  T N L+    NDG   E       + +FK    T   PD +TY  LI  FC
Sbjct: 10  RPGFQHNTYTCNSLLEVFVNDGCHREA------YRVFKDELVTLFRPDDFTYGTLIRGFC 63

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-KILEIN 407
           K  ++     + G +  +  TP  VTF SLI K+ E+N
Sbjct: 64  KAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELN 101


>gi|255661006|gb|ACU25672.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 376

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 151/321 (47%), Gaps = 24/321 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R     V SFNI+   L   +  +  +S+++ +  +G   D  TY IL++ FCK G ++ 
Sbjct: 53  REGSRSVASFNIMMRGLFDNRKVEEAMSIWELMTKSGFVEDSVTYGILVHGFCKNGYINK 112

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +L    +     DA  ++++I  LC ES++ +A ++   +   GC+ +   YN LI 
Sbjct: 113 SLHILEIAEQKGGVLDAFAYSAMINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIK 172

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GL        A+ +F EM   +      C P+  TYS +IDGLCK               
Sbjct: 173 GLIGASKRDDAVRIFREMGTTD------CPPNIATYSILIDGLCKGERFGEAYDLVKEML 226

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              LN     + L            L+ GLC   K+++A +L+  + + G  P+V  +NI
Sbjct: 227 EKGLNPSVITYSL------------LMKGLCLGHKVEMALQLWNQVTKKGFKPDVQMHNI 274

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GLC+ G+   T+   +++L   R N     P+L T N L+  F K G V +  VI+ 
Sbjct: 275 LIHGLCSVGK---TQLALSLYLDMNRWNCA---PNLVTQNTLMEGFYKDGNVRNALVIWA 328

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
           RIL +   PD +++   +K L
Sbjct: 329 RILKNELQPDIISYNITLKGL 349



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 144/327 (44%), Gaps = 29/327 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ +++ M         VT + IL     K  + +  L + +     G   D + Y+ +
Sbjct: 77  EAMSIWELMTKSGFVEDSVT-YGILVHGFCKNGYINKSLHILEIAEQKGGVLDAFAYSAM 135

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK  ++     VL  ++RS   P+   + +LIK L   S+  +A  +F ++    C
Sbjct: 136 INALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAVRIFREMGTTDC 195

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             ++ TY+ LI+GLC+      A +L +EM     E G+   P  ITYS ++ GLC    
Sbjct: 196 PPNIATYSILIDGLCKGERFGEAYDLVKEML----EKGL--NPSVITYSLLMKGLC---- 245

Query: 252 SANFLGFSCMASFSALNKMA--FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
               LG     +    N++    + P V++  +      LI GLC + K ++A  L+  +
Sbjct: 246 ----LGHKVEMALQLWNQVTKKGFKPDVQMHNI------LIHGLCSVGKTQLALSLYLDM 295

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            R    PN+VT N L+ G   DG +          +++ R+    L PD+ +YNI +   
Sbjct: 296 NRWNCAPNLVTQNTLMEGFYKDGNV------RNALVIWARILKNELQPDIISYNITLKGL 349

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVT 396
           C   R+S         +     P  +T
Sbjct: 350 CSCNRISDAIWFLHDAVRKKIIPTKIT 376


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 159/352 (45%), Gaps = 36/352 (10%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VF  ML+    +P V +++IL     K    +    +F R+    + P  +TYNI I
Sbjct: 507 AASVFSDMLDC-GLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKI 565

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK+GR S    +L + +   F P  +T+ S++     E  +  A   + ++   G  
Sbjct: 566 NGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVS 625

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG- 251
            +V TY TLING C+  +T +AL +  EM N   E       D   Y  +IDG CK+   
Sbjct: 626 PNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLEL------DIAAYGALIDGFCKKQDI 679

Query: 252 -SANFL-------GF--------SCMASFSALNKMAFYFPLVR------VQCLCLNFLCL 289
            +A++L       G         S ++ +  LN M     L +      + C    +  L
Sbjct: 680 ETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTL 739

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           IDGL K  +L +A +L+  +   G++P+++ Y +LI GLC  GQ++  +       +   
Sbjct: 740 IDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQK------ILAE 793

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +    + P++  YN LI    K G +   F +   +L    TP+  T+  LI
Sbjct: 794 MERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILI 845



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 146/333 (43%), Gaps = 31/333 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  ++  ML+ +   P   S+N +     +  + D   S+F  +   GL P+  TY+IL
Sbjct: 471 EATTLWQKMLD-KGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSIL 529

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ + K G   + F V  R++     P   T+   I  LC   R  EA  +  K    G 
Sbjct: 530 MDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGF 589

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
                TYN++++G  + G    AL  + EM     E GV   P+ ITY+T+I+G CK   
Sbjct: 590 VPVCLTYNSIMDGFIKEGSVSSALTAYREMC----ESGV--SPNVITYTTLINGFCKNNN 643

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
           +          +    N+M       R + L L+   +  LIDG CK   ++ A  LF  
Sbjct: 644 TD--------LALKMRNEM-------RNKGLELDIAAYGALIDGFCKKQDIETASWLFSE 688

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   GL PN V YN LI G  N   M      E    L KR+   G+  DL TY  LI+ 
Sbjct: 689 LLDGGLSPNSVIYNSLISGYRNLNNM------EAALNLQKRMLGEGISCDLQTYTTLIDG 742

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             K GR+     ++  +      PD + +T LI
Sbjct: 743 LLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLI 775



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 127/276 (46%), Gaps = 24/276 (8%)

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           +TYN L++  CK G++S    +  ++L     P  V++ S+I   C +  +  AA++F+ 
Sbjct: 454 FTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSD 513

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +   G + +V TY+ L++G  + G T  A  +F+ M + N        P   TY+  I+G
Sbjct: 514 MLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDEN------IVPSDFTYNIKING 567

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           LCK            +   S    M   F       +CL +  ++DG  K   +  A   
Sbjct: 568 LCK------------VGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTA 615

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           ++ +  +G+ PNV+TY  LI G C +   D          +   + + GL  D+  Y  L
Sbjct: 616 YREMCESGVSPNVITYTTLINGFCKNNNTD------LALKMRNEMRNKGLELDIAAYGAL 669

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           I+ FCK   + +   +F  +L    +P++V + SLI
Sbjct: 670 IDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLI 705



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 141/346 (40%), Gaps = 46/346 (13%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  +    +++I+     K    +    L K +   G  P   T+  +I    K G +  
Sbjct: 273 RGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVE 332

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   ++      + V  T+L+K  C + +++ A   F K+   G   +  TY  LI 
Sbjct: 333 ALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIE 392

Query: 204 GLCRTGHTIVALNLFEEMANGN---------------------------GEFGVVCE-PD 235
             C+ G+   A +L+ +M N N                            +  V C+  +
Sbjct: 393 WCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACDIAN 452

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
             TY++++  LCKE           M+  + L +      L   +   +++  +I G C+
Sbjct: 453 IFTYNSLLSWLCKEGK---------MSEATTLWQKMLDKGLAPTK---VSYNSMILGHCR 500

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
              L +A  +F  +   GL PNV+TY+IL+ G   +G        E  F +F R+    +
Sbjct: 501 QGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDT------EYAFYVFDRMVDENI 554

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            P  +TYNI IN  CK+GR S    +  + +   F P  +T+ S++
Sbjct: 555 VPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIM 600



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 106/245 (43%), Gaps = 18/245 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L     K  + D  L +   +   GL  D   Y  LI+ FCK   +     +
Sbjct: 626 PNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWL 685

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L    +P++V + SLI      + +  A  L  ++   G   D+ TY TLI+GL +
Sbjct: 686 FSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLK 745

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  ++AL+L+ EM+      G++  PD I Y+ +I+GLC +    N           ++
Sbjct: 746 EGRLVLALDLYSEMSAK----GII--PDIIIYTVLINGLCGKGQLENAQKILAEMERDSI 799

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                  P V +      +  LI G  K   L+ A  L   +   GL PN  TY+ILI G
Sbjct: 800 T------PNVPI------YNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILING 847

Query: 328 LCNDG 332
               G
Sbjct: 848 KIKGG 852



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 50/339 (14%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N L     K    +  +  F RL  + + P     N L+    K   +     V  +++
Sbjct: 177 YNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKMV 236

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                 D  T   +++    ++   EA   F + +  G +LD   Y+ +I   C+     
Sbjct: 237 LKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVE 296

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A  L ++M +     G V  P   T++++I G C + G       + + +    ++M  
Sbjct: 297 LACGLLKDMRDK----GWV--PSEGTFTSVI-GACVKQG-------NMVEALRLKDEMVS 342

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                 VQ   +    L+ G CK  KL  A E F  +   G  PN VTY +LI   C +G
Sbjct: 343 ----CGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNG 398

Query: 333 QMDETKHYE------------TVFL----------LFKRLNSTGLFPD--------LYTY 362
            M   K Y+            TVF+          +  R  ++ LF +        ++TY
Sbjct: 399 NM--AKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVESREEASKLFDEAVACDIANIFTY 456

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N L++  CK G++S    ++ ++L     P  V++ S+I
Sbjct: 457 NSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMI 495



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 105/279 (37%), Gaps = 24/279 (8%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D   YN L+N + K  +++       R++ S   P       L+  L     I EA  ++
Sbjct: 173 DIRIYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVY 232

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            K+ + G   D FT + ++    +  +   A   F E A   G      + DA  YS +I
Sbjct: 233 EKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLE-AKSRG-----VKLDAAAYSIVI 286

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
              CK       +  +C       +K   + P          F  +I    K   +  A 
Sbjct: 287 QAFCKNLD----VELACGLLKDMRDKG--WVPSEGT------FTSVIGACVKQGNMVEAL 334

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            L   +   G+  NVV    L++G C   ++       +    F ++N  G  P+  TY 
Sbjct: 335 RLKDEMVSCGVQMNVVVATTLVKGYCKQDKL------VSALEFFDKMNENGPSPNRVTYA 388

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +LI   CK G ++  + ++ ++      P      SLI+
Sbjct: 389 VLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIR 427



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 1/148 (0%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++  L   L K       L L+  ++  G+ PD   Y +LIN  C  G++ +   +L 
Sbjct: 733 LQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILA 792

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            + R   TP+   + +LI        + EA  L  ++   G   +  TY+ LING  + G
Sbjct: 793 EMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKGG 852

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAI 237
           ++ +   L  +  +G G    + E D+I
Sbjct: 853 NSALKSLLSLKFKDGKG-MKRINEQDSI 879


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 149/315 (47%), Gaps = 26/315 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L   L K  +  +   L   + + G  P+  TY ILI+ FCK GR+     V
Sbjct: 12  PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 71

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +       +AV +  LI  LC + ++ +A  +F  +   GC+ D+FT+N+LI GLC+
Sbjct: 72  LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 131

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 AL L+++M       GV+   + ITY+T+I    +          +   +   +
Sbjct: 132 VNKFEEALGLYQDML----LEGVI--ANTITYNTLIHAFLRRG--------AMQEALKLV 177

Query: 268 NKMAFYF-PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           N M F   PL  +      +  LI  LC+   ++    LF+ +   GL PN ++ NILI 
Sbjct: 178 NDMLFRGCPLDDI-----TYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILIN 232

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G +     +       + +   GL PD+ TYN LIN  CK GR      +F ++ 
Sbjct: 233 GLCRTGNIQHALEF------LRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQ 286

Query: 387 PSCFTPDAVTFTSLI 401
                PDA+T+ +LI
Sbjct: 287 VEGICPDAITYNTLI 301



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 143/324 (44%), Gaps = 30/324 (9%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           + ++   P V ++ IL     K    +   ++   ++  GL  +   YN LI+  CK  +
Sbjct: 40  MQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEK 99

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V     + G +      PD  TF SLI  LC  ++  EA  L+  + + G   +  TYNT
Sbjct: 100 VQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNT 159

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FS 259
           LI+   R G    AL L  +M          C  D ITY+ +I  LC+       L  F 
Sbjct: 160 LIHAFLRRGAMQEALKLVNDM------LFRGCPLDDITYNGLIKALCRAGNIEKGLALFE 213

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPN 317
            M S   LN                N  C  LI+GLC+   ++ A E  + +   GL P+
Sbjct: 214 DMMS-KGLNPN--------------NISCNILINGLCRTGNIQHALEFLRDMIHRGLTPD 258

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           +VTYN LI GLC  G+  E  +      LF +L   G+ PD  TYN LI+  CK G    
Sbjct: 259 IVTYNSLINGLCKTGRAQEALN------LFDKLQVEGICPDAITYNTLISWHCKEGMFDD 312

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
             ++  R + S F P+ VT+  L+
Sbjct: 313 AHLLLSRGVDSGFIPNEVTWYILV 336



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 129/302 (42%), Gaps = 60/302 (19%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL +F  M + +  +P + +FN L   L K   ++  L L++ + L G+  +  TYN L
Sbjct: 102 DALNMFGDM-SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTL 160

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ F + G +     ++  +L      D +T+  LIK LC    I +  ALF  +   G 
Sbjct: 161 IHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGL 220

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  + N LINGLCRTG+   AL    +M +          PD +TY+++I+GLCK  G
Sbjct: 221 NPNNISCNILINGLCRTGNIQHALEFLRDMIHRG------LTPDIVTYNSLINGLCK-TG 273

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            A            ALN                                    LF  L  
Sbjct: 274 RAQ----------EALN------------------------------------LFDKLQV 287

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+ P+ +TYN LI   C +G  D+        LL  R   +G  P+  T+ IL++ F K
Sbjct: 288 EGICPDAITYNTLISWHCKEGMFDDAH------LLLSRGVDSGFIPNEVTWYILVSNFIK 341

Query: 372 IG 373
            G
Sbjct: 342 EG 343



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 112/267 (41%), Gaps = 58/267 (21%)

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           GC  D+FTYNTLI GLC+ G+ + A  L  EM          CEP+ ITY+ +ID  CKE
Sbjct: 9   GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKG------CEPNVITYTILIDRFCKE 62

Query: 250 AG----------------SANFLGFSCMASF-----SALNKMAFYFPLVRVQCL--CLNF 286
                             + N +G++C+ S         + +  +  +    C      F
Sbjct: 63  GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTF 122

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE---------- 336
             LI GLCK++K + A  L+Q +   G++ N +TYN LI      G M E          
Sbjct: 123 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLF 182

Query: 337 -------------------TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
                                + E    LF+ + S GL P+  + NILIN  C+ G +  
Sbjct: 183 RGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQH 242

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKIL 404
                  ++    TPD VT+ SLI  L
Sbjct: 243 ALEFLRDMIHRGLTPDIVTYNSLINGL 269



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCL 289
           V C PD  TY+T+I GLCK+           +++   +N+M        V    + +  L
Sbjct: 8   VGCGPDIFTYNTLILGLCKKG--------YLVSARELMNEMQIKGCEPNV----ITYTIL 55

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           ID  CK  +L+ AR +   +   GL  N V YN LI  LC D ++ +  +      +F  
Sbjct: 56  IDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALN------MFGD 109

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409
           ++S G  PD++T+N LI   CK+ +      ++  +L      + +T+ +L     I++F
Sbjct: 110 MSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTL-----IHAF 164

Query: 410 FRQVA 414
            R+ A
Sbjct: 165 LRRGA 169



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           + +S+   G  P++ TYN LI GLC  G +   +       L   +   G  P++ TY I
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARE------LMNEMQIKGCEPNVITYTI 54

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           LI+ FCK GR+     +   +       +AV +  LI  L
Sbjct: 55  LIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISAL 94


>gi|255660984|gb|ACU25661.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 376

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 148/315 (46%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +     DA  ++++I  LC E+ +  A ++   +   GC+ +   YNTLINGL    
Sbjct: 119 MAEQKGGVVDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        + C P  ITY+T+I+GLCK                  LN 
Sbjct: 179 KFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNP 232

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
               + +            L+ GLC   K++ A +L+  +   G  P+V  +NILI GLC
Sbjct: 233 GVITYSM------------LMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+ RIL + 
Sbjct: 281 SVGKM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 390 FTPDAVTFTSLIKIL 404
             PD +++   +K L
Sbjct: 335 LEPDIISYNITLKGL 349



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 148/319 (46%), Gaps = 36/319 (11%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCF-ELWEMMGSEGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++  EMA   G
Sbjct: 66  MRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVL-EMAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSA-------NFLGFSCMASFSALNKM-------AF 272
             GVV   DA  YS +I+GLCKEA            +   C  +    N +       + 
Sbjct: 125 --GVV---DAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 273 YFPLVRV-------QC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +   +RV        C    + +  LI+GLCK      A  L + L   GL P V+TY++
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSM 239

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++GLC D ++      E    L+ ++ S G  PD+  +NILI+  C +G++     ++ 
Sbjct: 240 LMKGLCLDHKV------EKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYF 293

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +      P+ V+  +L++
Sbjct: 294 DMNRWKCAPNLVSHNTLME 312



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 103/244 (42%), Gaps = 53/244 (21%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P    +N L   L     ++  + +F+ +      P   TYN LIN  CK       + 
Sbjct: 161 KPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYN 220

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  +L     P  +T++ L+K LC + ++ +A  L+ ++   G + DV  +N LI+GLC
Sbjct: 221 LVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G   +AL+L+ +M          C P+ ++++T+++G  K+    N            
Sbjct: 281 SVGKMQLALSLYFDMNRWK------CAPNLVSHNTLMEGFYKDGDIRN------------ 322

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                                              A  ++  + R GL P++++YNI ++
Sbjct: 323 -----------------------------------ALVIWARILRNGLEPDIISYNITLK 347

Query: 327 GLCN 330
           GLC+
Sbjct: 348 GLCS 351



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 18/213 (8%)

Query: 45  DRAS--LEQFLKERCKSSGE-------GDITSITPNEALCVFDYMLNMRPSRPPVTSFNI 95
           DRA   L   +K  CK +         G + +    +A+ VF  M  M  S P + ++N 
Sbjct: 146 DRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCS-PTIITYNT 204

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
           L   L K + +    +L K L   GL P   TY++L+   C   +V     +  ++    
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKG 264

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           F PD      LI  LC+  ++  A +L+  +  + C  ++ ++NTL+ G  + G    AL
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 216 NLFEE-MANGNGEFGVVCEPDAITYSTIIDGLC 247
            ++   + NG        EPD I+Y+  + GLC
Sbjct: 325 VIWARILRNG-------LEPDIISYNITLKGLC 350



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V   NIL   L         LSL+  +N     P+  ++N L+  F K G + +  V
Sbjct: 266 KPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALV 325

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           +  RILR+   PD +++   +K LC+ +RI +A
Sbjct: 326 IWARILRNGLEPDIISYNITLKGLCSCNRISDA 358



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 50/277 (18%), Positives = 97/277 (35%), Gaps = 60/277 (21%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV + +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL         ++++E M       G V   D+ITY                
Sbjct: 60  SSFNIMMRGLFDNDKVDEVISIWELMKKS----GFV--EDSITYGI-------------- 99

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                                            L+ G CK   +  +  + +   + G +
Sbjct: 100 ---------------------------------LVHGFCKNGYIDKSLHVLEMAEQKGGV 126

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ +I GLC +  +D          +   +  +G  P+ + YN LIN      + 
Sbjct: 127 VDAFAYSAMINGLCKEANLDRA------VSVLNGMIKSGCKPNAHVYNTLINGLVGASKF 180

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                +F  +     +P  +T+ +LI  L  N  F +
Sbjct: 181 EDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGE 217


>gi|255660986|gb|ACU25662.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 376

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 149/315 (47%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +     DA  ++++I  LC E+ +  A ++   +   GC+ +   YNTLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        + C P+ ITY+T+I+GLCK                  LN 
Sbjct: 179 KFEDAIRVFREMGT------MHCSPNIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNP 232

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
               + +            L+ GLC   K++ A +L+  +   G  P+V  +N+LI GLC
Sbjct: 233 GVITYSM------------LMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGLC 280

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+ RIL + 
Sbjct: 281 SVGKM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 390 FTPDAVTFTSLIKIL 404
             PD +++   +K L
Sbjct: 335 LEPDIISYNITLKGL 349



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 146/326 (44%), Gaps = 34/326 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K  + D  L + +     G   D + Y+ 
Sbjct: 76  DEVISIWELMKKSGFVEDSIT-YGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+A  + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  ++ TYNTLINGLC+      A NL +E+ +          P  ITYS ++ GLC + 
Sbjct: 195 CSPNIITYNTLINGLCKNEMFGEAYNLVKELLDKG------LNPGVITYSMLMKGLCLDH 248

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L       ++ +    F  P V++  +      LI GLC + K+++A  L+  + 
Sbjct: 249 KVEKALQL-----WNQVTSKGFK-PDVQMHNV------LIHGLCSVGKMQLALSLYFDMN 296

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R    PN+V++N L+ G   DG +          +++ R+   GL PD+ +YNI +   C
Sbjct: 297 RWKCAPNLVSHNTLMEGFYKDGDI------RNALVIWARILRNGLEPDIISYNITLKGLC 350

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVT 396
              R+S   +         F  DAVT
Sbjct: 351 SCNRISDAIL---------FLHDAVT 367



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 138/300 (46%), Gaps = 29/300 (9%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCF-ELWEMMGSEGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++  EMA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVL-EMAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CL 284
             GV+   DA  YS +I+GLCKEA        +   + S LN M      ++  C     
Sbjct: 125 --GVL---DAFAYSAMINGLCKEA--------NLDRAVSVLNGM------IKSGCKPNAH 165

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  LI+GL   SK + A  +F+ +      PN++TYN LI GLC +    E       +
Sbjct: 166 VYNTLINGLVGASKFEDAIRVFREMGTMHCSPNIITYNTLINGLCKNEMFGEA------Y 219

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L K L   GL P + TY++L+   C   +V     ++ ++    F PD      LI  L
Sbjct: 220 NLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGL 279



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 51/277 (18%), Positives = 100/277 (36%), Gaps = 60/277 (21%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV + +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     ++++E M     + G V   D+ITY                
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMK----KSGFV--EDSITYGI-------------- 99

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                                            L+ G CK   +  +  + +   + G +
Sbjct: 100 ---------------------------------LVHGFCKNGYIDKSLHVLEMAEQKGGV 126

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ +I GLC +  +D          +   +  +G  P+ + YN LIN      + 
Sbjct: 127 LDAFAYSAMINGLCKEANLDRA------VSVLNGMIKSGCKPNAHVYNTLINGLVGASKF 180

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                +F  +     +P+ +T+ +LI  L  N  F +
Sbjct: 181 EDAIRVFREMGTMHCSPNIITYNTLINGLCKNEMFGE 217


>gi|255661012|gb|ACU25675.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 376

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 147/321 (45%), Gaps = 24/321 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R     V SFNI+   L      D V+S+ + +  +G   D  TY IL++ FCK G ++ 
Sbjct: 53  REGSRSVASFNIMMRGLFDNGKVDEVISILELMKKSGFIEDSITYGILVHGFCKNGYINK 112

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              VL    R     DA  ++++I  LC E+++ +A ++   +   GC+ +   YN LIN
Sbjct: 113 SLHVLEIAERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALIN 172

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GL        A+ +  EM   N      C P  +TYST+I+GLCK               
Sbjct: 173 GLVGASKFEDAVRVVREMGTTN------CSPTLVTYSTLINGLCKVERFGEAYDLVKEML 226

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              LN     + L            L+ GLC   K+++A +L   +   G  P+V  +NI
Sbjct: 227 ZKGLNPSVITYSL------------LMKGLCLGHKVEMALQLXNQVTSKGFKPDVQMHNI 274

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GLC+ G+       +   LL+  +N     P+L T+N L+  F K   + +  VI+ 
Sbjct: 275 LIHGLCSVGKT------QLALLLYLDMNRWNCAPNLVTHNTLMEGFYKDDDIRNALVIWA 328

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
           RIL +   PD +++   +K L
Sbjct: 329 RILRNGLQPDIISYNITLKGL 349



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 146/319 (45%), Gaps = 36/319 (11%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N F ++GR+   F +   + R   +    +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGFFRVGRIKDCFELWEMMGREG-SRSVASFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  ++   ++  G   D  TY  L++G C+ G+   +L++  E+A   G
Sbjct: 66  MRGLFDNGKVDEVISILELMKKSGFIEDSITYGILVHGFCKNGYINKSLHVL-EIAERKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAG-----------------------SANFLGFSCMAS 263
             GV+   DA  YS +I+GLCKEA                        +A   G    + 
Sbjct: 125 --GVL---DAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASK 179

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F    ++             + +  LI+GLCK+ +   A +L + +   GL P+V+TY++
Sbjct: 180 FEDAVRVVREMGTTNCSPTLVTYSTLINGLCKVERFGEAYDLVKEMLZKGLNPSVITYSL 239

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++GLC   ++      E    L  ++ S G  PD+  +NILI+  C +G+     +++ 
Sbjct: 240 LMKGLCLGHKV------EMALQLXNQVTSKGFKPDVQMHNILIHGLCSVGKTQLALLLYL 293

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +      P+ VT  +L++
Sbjct: 294 DMNRWNCAPNLVTHNTLME 312



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 56/119 (47%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++++L   L      +  L L  ++   G  PD   +NILI+  C +G+     ++
Sbjct: 232 PSVITYSLLMKGLCLGHKVEMALQLXNQVTSKGFKPDVQMHNILIHGLCSVGKTQLALLL 291

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              + R    P+ VT  +L++    +  I  A  ++ ++   G + D+ +YN  + GLC
Sbjct: 292 YLDMNRWNCAPNLVTHNTLMEGFYKDDDIRNALVIWARILRNGLQPDIISYNITLKGLC 350



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V   NIL   L         L L+  +N     P+  T+N L+  F K   + +  V
Sbjct: 266 KPDVQMHNILIHGLCSVGKTQLALLLYLDMNRWNCAPNLVTHNTLMEGFYKDDDIRNALV 325

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           +  RILR+   PD +++   +K LC+ +RI +A
Sbjct: 326 IWARILRNGLQPDIISYNITLKGLCSCNRISDA 358


>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 408

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 160/363 (44%), Gaps = 65/363 (17%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           F+ + N  P+ PP++ F  +   LA +  Y   LS  ++L+  G+ PD +TYN+LINCF 
Sbjct: 51  FNRLTNQIPT-PPISQFGRILASLALSNRYSIALSFHQKLHFKGIKPDLFTYNVLINCFS 109

Query: 137 KMG------RVSHGFVVLG-----------RILRSC----FTPDAVTFTSLIKDLCAESR 175
           ++G      RVS+  ++ G           R+L+         D V +T++I  LC +  
Sbjct: 110 QLGHTHFLDRVSYETLINGLCKVGETRAALRLLKEVNEKIVQYDVVMYTAIINGLCKDKL 169

Query: 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-------------- 221
           + +A  L+T++       DVFTYN +I G C  G    A+ LF +M              
Sbjct: 170 VDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLENVEADEYTFNT 229

Query: 222 ------ANGNGEFGVV---------CEPDAITYSTIIDGLC--KEAGSANFLGFSCMASF 264
                   GN   G            +PD ITY++++DG C  KE   A  + F+ M   
Sbjct: 230 LVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNI-FNTMVQR 288

Query: 265 SALNKMAFYFPLVRVQCL-----CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
                +        + C       + +  LIDG CK  ++  A EL   +   G  PN++
Sbjct: 289 GVTANVRTMNLFQEMHCKEIIPDTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNII 348

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TYN ++  LC      +  H E    L +++   G+ PD YTY IL N   K GR+    
Sbjct: 349 TYNSILYALC------KIHHVEKTIALLRKIKVKGIQPDAYTYTILTNGLFKDGRLEEAR 402

Query: 380 VIF 382
            IF
Sbjct: 403 EIF 405



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 108/253 (42%), Gaps = 38/253 (15%)

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
            R+     TP    F  ++  L   +R   A +   KL   G + D+FTYN LIN   + 
Sbjct: 52  NRLTNQIPTPPISQFGRILASLALSNRYSIALSFHQKLHFKGIKPDLFTYNVLINCFSQL 111

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
           GHT                       D ++Y T+I+GLCK   +      + +     +N
Sbjct: 112 GHTHFL--------------------DRVSYETLINGLCKVGETR-----AALRLLKEVN 146

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
           +    + +V        +  +I+GLCK   +  A +L+  +    + P+V TYN +I G 
Sbjct: 147 EKIVQYDVVM-------YTAIINGLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGF 199

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C  G++ +         LF  +    +  D YT+N L++ FCK G V  G  +   ++  
Sbjct: 200 CVVGRLKDA------IGLFNDMKLENVEADEYTFNTLVSAFCKEGNVREGKAVVAVMMKE 253

Query: 389 CFTPDAVTFTSLI 401
              PD +T+ SL+
Sbjct: 254 GVKPDIITYNSLM 266



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 37/257 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  ++  M+  R S P V ++N +             + LF  + L  +  D YT+N 
Sbjct: 171 DDAFDLYTEMVAKRVS-PDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLENVEADEYTFNT 229

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ FCK G V  G  V+  +++    PD +T+ SL+   C    + +A  +F  +   G
Sbjct: 230 LVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQRG 289

Query: 191 CELDVFT------------------YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
              +V T                  Y++LI+G C++G    AL L +EM +  G+     
Sbjct: 290 VTANVRTMNLFQEMHCKEIIPDTIAYSSLIDGFCKSGRIPQALELVDEMHD-RGQ----- 343

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
            P+ ITY++I+  LCK              + + L K+     +  +Q     +  L +G
Sbjct: 344 PPNIITYNSILYALCK--------IHHVEKTIALLRKIK----VKGIQPDAYTYTILTNG 391

Query: 293 LCKISKLKIARELFQSL 309
           L K  +L+ ARE+F  L
Sbjct: 392 LFKDGRLEEAREIFPDL 408


>gi|255660990|gb|ACU25664.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 376

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 148/315 (46%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +     DA  ++++I  LC E+ +  A ++   +   GC+ +   YNTLINGL    
Sbjct: 119 MAQQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        + C P  ITY+T+I+GLCK                  LN 
Sbjct: 179 KFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNP 232

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
               + +            L+ GLC   K++ A +L+  +   G  P+V  +NILI GLC
Sbjct: 233 GVITYSM------------LMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+ RIL + 
Sbjct: 281 SVGKM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 390 FTPDAVTFTSLIKIL 404
             PD +++   +K L
Sbjct: 335 LEPDIISYNITLKGL 349



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 148/319 (46%), Gaps = 36/319 (11%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCF-ELWEMMGSEGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++  EMA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVL-EMAQQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSA-------NFLGFSCMASFSALNKM-------AF 272
             GV+   DA  YS +I+GLCKEA            +   C  +    N +       + 
Sbjct: 125 --GVL---DAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 273 YFPLVRV-------QC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +   +RV        C    + +  LI+GLCK      A  L + L   GL P V+TY++
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSM 239

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++GLC D ++      E    L+ ++ S G  PD+  +NILI+  C +G++     ++ 
Sbjct: 240 LMKGLCLDHKV------EKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYF 293

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +      P+ V+  +L++
Sbjct: 294 DMNRWKCAPNLVSHNTLME 312



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 103/244 (42%), Gaps = 53/244 (21%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P    +N L   L     ++  + +F+ +      P   TYN LIN  CK       + 
Sbjct: 161 KPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYN 220

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  +L     P  +T++ L+K LC + ++ +A  L+ ++   G + DV  +N LI+GLC
Sbjct: 221 LVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G   +AL+L+ +M          C P+ ++++T+++G  K+    N            
Sbjct: 281 SVGKMQLALSLYFDMNRWK------CAPNLVSHNTLMEGFYKDGDIRN------------ 322

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                                              A  ++  + R GL P++++YNI ++
Sbjct: 323 -----------------------------------ALVIWARILRNGLEPDIISYNITLK 347

Query: 327 GLCN 330
           GLC+
Sbjct: 348 GLCS 351



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 18/213 (8%)

Query: 45  DRAS--LEQFLKERCKSSGE-------GDITSITPNEALCVFDYMLNMRPSRPPVTSFNI 95
           DRA   L   +K  CK +         G + +    +A+ VF  M  M  S P + ++N 
Sbjct: 146 DRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCS-PTIITYNT 204

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
           L   L K + +    +L K L   GL P   TY++L+   C   +V     +  ++    
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKG 264

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           F PD      LI  LC+  ++  A +L+  +  + C  ++ ++NTL+ G  + G    AL
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 216 NLFEE-MANGNGEFGVVCEPDAITYSTIIDGLC 247
            ++   + NG        EPD I+Y+  + GLC
Sbjct: 325 VIWARILRNG-------LEPDIISYNITLKGLC 350



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V   NIL   L         LSL+  +N     P+  ++N L+  F K G + +  V
Sbjct: 266 KPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALV 325

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           +  RILR+   PD +++   +K LC+ +RI +A
Sbjct: 326 IWARILRNGLEPDIISYNITLKGLCSCNRISDA 358



 Score = 45.1 bits (105), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 51/277 (18%), Positives = 98/277 (35%), Gaps = 60/277 (21%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV + +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     ++++E M       G V   D+ITY                
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMKKS----GFV--EDSITYGI-------------- 99

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                                            L+ G CK   +  +  + +   + G +
Sbjct: 100 ---------------------------------LVHGFCKNGYIDKSLHVLEMAQQKGGV 126

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ +I GLC +  +D          +   +  +G  P+ + YN LIN      + 
Sbjct: 127 LDAFAYSAMINGLCKEANLDRA------VSVLNGMIKSGCKPNAHVYNTLINGLVGASKF 180

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                +F  +     +P  +T+ +LI  L  N  F +
Sbjct: 181 EDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGE 217


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 156/333 (46%), Gaps = 29/333 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + + M + +  +P + ++N +   L K   Y     +   +   GL PD  TYN L
Sbjct: 19  EAFEIMNSMAD-KGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTL 77

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   C+    S    + G +LR    PD V+F+SL+        + +A   F  ++ FG 
Sbjct: 78  LVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGL 137

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA- 250
             D   Y  L++G CR G+ + AL + +EM     E G  C  D I Y+TI++GLCKE  
Sbjct: 138 VPDNVIYTVLMHGYCRNGNMLEALKIRDEML----EQG--CVLDVIAYNTILNGLCKEKM 191

Query: 251 -GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              A+ L F  M    AL    FY            F  LI G C+   +  A  LF ++
Sbjct: 192 LTDADKL-FDEMVERGALPD--FY-----------TFTTLIHGHCQDGNMTKALSLFGTM 237

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            +  + P++V YN LI G C  G+M++         L+  + S  +FP+  TY ILIN +
Sbjct: 238 TQRNIKPDIVAYNTLIDGFCKVGEMEKASE------LWDGMISRKIFPNHITYGILINAY 291

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           C +G VS  F ++  ++     P  VT  ++IK
Sbjct: 292 CSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIK 324



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 142/331 (42%), Gaps = 60/331 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F  ML  +   P + SF+ L    ++ +H D  L  F+ +   GL PD   Y +
Sbjct: 88  SEAKEIFGEMLR-QGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTV 146

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +C+ G +     +   +L      D + + +++  LC E  + +A  LF ++   G
Sbjct: 147 LMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG 206

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D +T+ TLI+G C+ G+   AL+LF  M   N       +PD + Y+T+IDG C   
Sbjct: 207 ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRN------IKPDIVAYNTLIDGFC--- 257

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                                       K+ +++ A EL+  + 
Sbjct: 258 --------------------------------------------KVGEMEKASELWDGMI 273

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
              + PN +TY ILI   C+ G + E       F L+  +   G+ P L T N +I  +C
Sbjct: 274 SRKIFPNHITYGILINAYCSVGHVSEA------FRLWDVMIEKGIKPTLVTCNTVIKGYC 327

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + G  S      GR++     PD +++ +LI
Sbjct: 328 RSGDSSKADEFLGRMIAKGVAPDHISYNTLI 358



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 6/125 (4%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LI   C+   L+ A E+  S+   GL P++ TYN +I GLC  G+    K      +L +
Sbjct: 7   LIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKG-----ILIE 61

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            LN  GL PD  TYN L+   C+    S    IFG +L     PD V+F+SL+ +   N 
Sbjct: 62  MLN-IGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNR 120

Query: 409 FFRQV 413
              Q 
Sbjct: 121 HLDQA 125



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 36/133 (27%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL +F  M   R  +P + ++N L     K    +    L+  +    +FP+  TY IL
Sbjct: 229 KALSLFGTM-TQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGIL 287

Query: 132 INCFCKMGRVSHGFVV-----------------------------------LGRILRSCF 156
           IN +C +G VS  F +                                   LGR++    
Sbjct: 288 INAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGV 347

Query: 157 TPDAVTFTSLIKD 169
            PD +++ +LI D
Sbjct: 348 APDHISYNTLIND 360


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 154/321 (47%), Gaps = 31/321 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V SFNIL   L +    D     F+ +   G FPD  +YN LIN FC++  +S G  +
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDL 271

Query: 148 LGR-ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L   +L    +PD +T+TS+I   C    +  A+ LF ++   G + + FT+N LI+G  
Sbjct: 272 LKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFG 331

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G+   A+ ++E+M        + C PD +T++++IDG C+E                 
Sbjct: 332 KVGNMRSAMVMYEKM------LLLGCLPDVVTFTSLIDGYCREG---------------E 370

Query: 267 LNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +N+    +  ++V+ L  N   +  LI+ LCK ++++ AR   + L  + ++P    YN 
Sbjct: 371 VNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNP 430

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +I G C  G++DE         +   +      PD  T+ ILI   C  GR+      F 
Sbjct: 431 VIDGFCKAGKVDEAN------FIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFY 484

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
           +++     PD +T  SLI  L
Sbjct: 485 KMIEINCVPDEITINSLISCL 505



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 36/338 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  +   +L    A+    D+  +    ++  G+    + YN L+N   K   V    ++
Sbjct: 142 PDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLL 201

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
               L   F PD  +F  LI+ LC    I +A   F  +  FGC  D+ +YNTLING CR
Sbjct: 202 FREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCR 261

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMAS-- 263
                   +L +E     G       PD ITY++II G CK  +  +A+ L F  M S  
Sbjct: 262 VNEISKGHDLLKEDMLIKG-----VSPDVITYTSIISGYCKLGDMKAASEL-FDEMVSSG 315

Query: 264 -------FSAL-----------NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIAR 303
                  F+ L           + M  Y  ++ + CL   + F  LIDG C+  ++    
Sbjct: 316 IKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGL 375

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           +L++ +    L PNV TY +LI  LC + ++ E +++       + L S+ + P  + YN
Sbjct: 376 KLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNF------LRHLKSSEVVPKPFIYN 429

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +I+ FCK G+V     I   +      PD +TFT LI
Sbjct: 430 PVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILI 467



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 153/337 (45%), Gaps = 44/337 (13%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            ++++L   L K    D+   +F  +   G+ PD     +L++ + +MG++      L  
Sbjct: 110 NTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNE 169

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +           + +L+  L  ++ + EA  LF +        DV+++N LI GLCR G 
Sbjct: 170 VHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGE 229

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A   F+ M N    FG  C PD ++Y+T+I+G C+                  +N++
Sbjct: 230 IDKAFEFFQNMGN----FG--CFPDIVSYNTLINGFCR------------------VNEI 265

Query: 271 AFYFPLVRVQCL-------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +    L++   L        + +  +I G CK+  +K A ELF  +  +G+ PN  T+N+
Sbjct: 266 SKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNV 325

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI G    G M       +  ++++++   G  PD+ T+  LI+ +C+ G V+ G  ++ 
Sbjct: 326 LIDGFGKVGNM------RSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWE 379

Query: 384 RILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
            +     +P+  T+  LI       +I E  +F R +
Sbjct: 380 EMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHL 416



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 113/266 (42%), Gaps = 24/266 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  +     K         LF  +  +G+ P+ +T+N+LI+ F K+G +    V+
Sbjct: 283 PDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVM 342

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++L     PD VTFTSLI   C E  + +   L+ +++V     +V+TY  LIN LC+
Sbjct: 343 YEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCK 402

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
                 A N    + +      VV  P    Y+ +IDG CK  +   ANF+         
Sbjct: 403 ENRIREARNFLRHLKSSE----VV--PKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKC 456

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             +K+ F                LI G C   ++  A   F  +     +P+ +T N LI
Sbjct: 457 RPDKITFTI--------------LIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLI 502

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLN 351
             L   G  +E    +   L  ++LN
Sbjct: 503 SCLLKAGMPNEASQIKQAAL--QKLN 526



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 7/175 (4%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD M++    +P   +FN+L     K  +  + + +++++ L G  PD  T+  LI+ +
Sbjct: 307 LFDEMVS-SGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGY 365

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G V+ G  +   +     +P+  T+  LI  LC E+RI EA      L+        
Sbjct: 366 CREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKP 425

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           F YN +I+G C+ G    A  +  EM          C PD IT++ +I G C + 
Sbjct: 426 FIYNPVIDGFCKAGKVDEANFIVAEMQEKK------CRPDKITFTILIIGNCMKG 474



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 6/148 (4%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EG++     N+ L +++ M  +R   P V ++ +L   L K        +  + L  + +
Sbjct: 368 EGEV-----NQGLKLWEEM-KVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEV 421

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P  + YN +I+ FCK G+V     ++  +      PD +TFT LI   C + R++EA +
Sbjct: 422 VPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAIS 481

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTG 209
            F K+    C  D  T N+LI+ L + G
Sbjct: 482 TFYKMIEINCVPDEITINSLISCLLKAG 509


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 157/328 (47%), Gaps = 31/328 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N L   L     +  +  L+  +   GL P+ +TYNIL+   CK  RV     
Sbjct: 141 KPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHK 200

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +      PDAVT+T+++  LC   +I +A  L  + +       V  YN LI+G+C
Sbjct: 201 LFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKP-----SVPVYNALIDGMC 255

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFS 265
           + G   VA+ L  EM + NG      +P+ ++YS II+ LC        F  F+ M    
Sbjct: 256 KEGRIEVAIKLLGEMMD-NG-----VDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
               +  + PL++         C + G     KL  A +L++ + + G  PNVV YN LI
Sbjct: 310 CDANIHTFTPLIKG--------CFMRG-----KLYEALDLWKLMIQDGCEPNVVAYNTLI 356

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC++G ++E         +  ++  +G  P++ TY+ILI+ F K G +      + R+
Sbjct: 357 HGLCSNGSLEEA------LQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRM 410

Query: 386 LPSCFTPDAVTFTSLIKILEINSFFRQV 413
           +     P+ VT+T ++ +L  NS F Q 
Sbjct: 411 ISHGCRPNVVTYTCMVDVLCKNSMFDQA 438



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 154/345 (44%), Gaps = 49/345 (14%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N L   + K    +  + L   +   G+ P+  +Y+ +IN  C  G V   F 
Sbjct: 241 KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFA 300

Query: 147 VLGRI-LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           +  ++ LR C   +  TFT LIK      ++ EA  L+  +   GCE +V  YNTLI+GL
Sbjct: 301 LFAQMFLRGC-DANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C  G    AL + ++M          C P+  TYS +IDG  K   S + +G S      
Sbjct: 360 CSNGSLEEALQVCDQMQRSG------CLPNVTTYSILIDGFAK---SGDLVGAS-----E 405

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             N+M  +     V    + + C++D LCK S    A  L + +   G  PN +T+N  I
Sbjct: 406 TWNRMISHGCRPNV----VTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFI 461

Query: 326 RGLCNDGQMD-----------------------------ETKHYETVFLLFKRLNSTGLF 356
           +GLC +G+++                                 YE  F LF+ + +  L 
Sbjct: 462 KGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQ 521

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           P+L TYN ++  F + G +     +FG+ L     PD++T+ ++I
Sbjct: 522 PNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMI 566



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 141/349 (40%), Gaps = 58/349 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY------------------- 128
           P V ++NIL   L K    D    LF  ++  G  PD  TY                   
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236

Query: 129 -----------NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177
                      N LI+  CK GR+     +LG ++ +   P+ V+++ +I  LC    + 
Sbjct: 237 AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVE 296

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
            A ALF ++ + GC+ ++ T+  LI G    G    AL+L++ M          CEP+ +
Sbjct: 297 LAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDG------CEPNVV 350

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCK 295
            Y+T+I GLC           S   +    ++M       R  CL     +  LIDG  K
Sbjct: 351 AYNTLIHGLCSNG--------SLEEALQVCDQMQ------RSGCLPNVTTYSILIDGFAK 396

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
              L  A E +  +   G  PNVVTY  ++  LC +   D+         L +++   G 
Sbjct: 397 SGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANS------LVEKMTLEGC 450

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            P+  T+N  I   C  GRV     +  R+      P+  T+  L+  L
Sbjct: 451 TPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDAL 499



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 140/331 (42%), Gaps = 61/331 (18%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL ++  M+      P V ++N L   L      +  L +  ++  +G  P+  TY+IL
Sbjct: 332 EALDLWKLMIQ-DGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSIL 390

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ F K G +        R++     P+ VT+T ++  LC  S   +A +L  K+ + GC
Sbjct: 391 IDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGC 450

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T+NT I GLC  G    A+ L E M  G+G     C P+  TY+ ++D       
Sbjct: 451 TPNTMTFNTFIKGLCGNGRVEWAMKLLERM-QGHG-----CLPNITTYNELLD------- 497

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                    L +++K + A  LFQ +  
Sbjct: 498 ----------------------------------------ALFRMNKYEEAFGLFQEIEA 517

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
             L PN+VTYN ++ G    G M E         LF +    G  PD  TYN +I+ +CK
Sbjct: 518 RNLQPNLVTYNTVLYGFSRAGMMGEA------LQLFGKALVRGTAPDSITYNTMIHAYCK 571

Query: 372 IGRVSSGFVIFGRILP-SCFTPDAVTFTSLI 401
            G+V     +  R+     + PD +T+TSLI
Sbjct: 572 QGKVKIAAQLVERVSSMKEWHPDIITYTSLI 602



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 117/285 (41%), Gaps = 62/285 (21%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V ++  +   L K   +D   SL +++ L G  P+  T+N  I   C  GRV     
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMK 475

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L R+      P+  T+  L+  L   ++  EA  LF ++     + ++ TYNT++ G  
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFS 535

Query: 207 RTGHTIVALNLF-EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           R G    AL LF + +  G         PD+ITY+T+I   CK+                
Sbjct: 536 RAGMMGEALQLFGKALVRGTA-------PDSITYNTMIHAYCKQG--------------- 573

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR-AGLMPNVVTYNIL 324
                                           K+KIA +L + +       P+++TY  L
Sbjct: 574 --------------------------------KVKIAAQLVERVSSMKEWHPDIITYTSL 601

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
           I G CN   ++E   +     L K +N  G+ P+  T+N L+ CF
Sbjct: 602 IWGACNWMNIEEAMAF-----LDKAINQ-GICPNFATWNALVRCF 640



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F   +  R  +P + ++N +    ++       L LF +  + G  PD  TYN +
Sbjct: 507 EAFGLFQE-IEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTM 565

Query: 132 INCFCKMGRVSHGFVVLGRILR-SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           I+ +CK G+V     ++ R+     + PD +T+TSLI   C    I EA A   K    G
Sbjct: 566 IHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQG 625

Query: 191 CELDVFTYNTLI 202
              +  T+N L+
Sbjct: 626 ICPNFATWNALV 637


>gi|255660982|gb|ACU25660.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 350

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 148/316 (46%), Gaps = 24/316 (7%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
            V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL
Sbjct: 32  SVSSFNIMMRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVL 91

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
               +     DA  ++++I  LC E+ +  A ++   +   GC+ +   YNTLINGL   
Sbjct: 92  EMAEQKGGVVDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGA 151

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                A+ +F EM        + C P  ITY+T+I+GLCK                  LN
Sbjct: 152 SKFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLN 205

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
                + +            L+ GLC   K++ A +L+  +   G  P+V  +NILI GL
Sbjct: 206 PGVITYSM------------LMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGL 253

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C+ G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+ RIL +
Sbjct: 254 CSVGKM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRN 307

Query: 389 CFTPDAVTFTSLIKIL 404
              PD +++   +K L
Sbjct: 308 GLEPDIISYNITLKGL 323



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 102/243 (41%), Gaps = 53/243 (21%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P    +N L   L     ++  + +F+ +      P   TYN LIN  CK       + 
Sbjct: 135 KPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYN 194

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  +L     P  +T++ L+K LC + ++ +A  L+ ++   G + DV  +N LI+GLC
Sbjct: 195 LVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLC 254

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G   +AL+L+ +M          C P+ ++++T+++G  K+    N            
Sbjct: 255 SVGKMQLALSLYFDMNRWK------CAPNLVSHNTLMEGFYKDGDIRN------------ 296

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                                              A  ++  + R GL P++++YNI ++
Sbjct: 297 -----------------------------------ALVIWARILRNGLEPDIISYNITLK 321

Query: 327 GLC 329
           GLC
Sbjct: 322 GLC 324



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 18/213 (8%)

Query: 45  DRAS--LEQFLKERCKSSGE-------GDITSITPNEALCVFDYMLNMRPSRPPVTSFNI 95
           DRA   L   +K  CK +         G + +    +A+ VF  M  M  S P + ++N 
Sbjct: 120 DRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCS-PTIITYNT 178

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
           L   L K + +    +L K L   GL P   TY++L+   C   +V     +  ++    
Sbjct: 179 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKG 238

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           F PD      LI  LC+  ++  A +L+  +  + C  ++ ++NTL+ G  + G    AL
Sbjct: 239 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 298

Query: 216 NLFEE-MANGNGEFGVVCEPDAITYSTIIDGLC 247
            ++   + NG        EPD I+Y+  + GLC
Sbjct: 299 VIWARILRNG-------LEPDIISYNITLKGLC 324



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V   NIL   L         LSL+  +N     P+  ++N L+  F K G + +  V
Sbjct: 240 KPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALV 299

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           +  RILR+   PD +++   +K LC+ +RI +A
Sbjct: 300 IWARILRNGLEPDIISYNITLKGLCSCNRISDA 332



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 7/113 (6%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++G  +++K+K   EL++ +   G   +V ++NI++RGL ++ ++DE      V  +++
Sbjct: 5   MLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMRGLFDNDKVDE------VISIWE 57

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +  +G   D  TY IL++ FCK G +     +           DA  ++++I
Sbjct: 58  LMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMI 110



 Score = 41.6 bits (96), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+ G CK   +  +  + +   + G + +   Y+ +I GLC +  +D          +  
Sbjct: 74  LVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMINGLCKEANLDRA------VSVLN 127

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            +  +G  P+ + YN LIN      +      +F  +     +P  +T+ +LI  L  N 
Sbjct: 128 GMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNE 187

Query: 409 FFRQ 412
            F +
Sbjct: 188 MFGE 191


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 154/321 (47%), Gaps = 31/321 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V SFNIL   L +    D     F+ +   G FPD  +YN LIN FC++  +S G  +
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDL 271

Query: 148 LGR-ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L   +L    +PD +T+TS+I   C    +  A+ LF ++   G + + FT+N LI+G  
Sbjct: 272 LKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFG 331

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G+   A+ ++E+M        + C PD +T++++IDG C+E                 
Sbjct: 332 KVGNMRSAMVMYEKM------LLLGCLPDVVTFTSLIDGYCREG---------------E 370

Query: 267 LNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +N+    +  ++V+ L  N   +  LI+ LCK ++++ AR   + L  + ++P    YN 
Sbjct: 371 VNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNP 430

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +I G C  G++DE         +   +      PD  T+ ILI   C  GR+      F 
Sbjct: 431 VIDGFCKAGKVDEAN------FIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFY 484

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
           +++     PD +T  SLI  L
Sbjct: 485 KMIEINCVPDEITINSLISCL 505



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 36/338 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  +   +L    A+    D+  +    ++  G+    + YN L+N   K   V    ++
Sbjct: 142 PDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLL 201

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
               L   F PD  +F  LI+ LC    I +A   F  +  FGC  D+ +YNTLING CR
Sbjct: 202 FREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCR 261

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMAS-- 263
                   +L +E     G       PD ITY++II G CK  +  +A+ L F  M S  
Sbjct: 262 VNEISKGHDLLKEDMLIKG-----VSPDVITYTSIISGYCKLGDMKAASEL-FDEMVSSG 315

Query: 264 -------FSAL-----------NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIAR 303
                  F+ L           + M  Y  ++ + CL   + F  LIDG C+  ++    
Sbjct: 316 IKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGL 375

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           +L++ +    L PNV TY +LI  LC + ++ E +++       + L S+ + P  + YN
Sbjct: 376 KLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNF------LRHLKSSEVVPKPFIYN 429

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +I+ FCK G+V     I   +      PD +TFT LI
Sbjct: 430 PVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILI 467



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 153/337 (45%), Gaps = 44/337 (13%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            ++++L   L K    D+   +F  +   G+ PD     +L++ + +MG++      L  
Sbjct: 110 NTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNE 169

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +           + +L+  L  ++ + EA  LF +        DV+++N LI GLCR G 
Sbjct: 170 VHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGE 229

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A   F+ M N    FG  C PD ++Y+T+I+G C+                  +N++
Sbjct: 230 IDKAFEFFQNMGN----FG--CFPDIVSYNTLINGFCR------------------VNEI 265

Query: 271 AFYFPLVRVQCL-------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +    L++   L        + +  +I G CK+  +K A ELF  +  +G+ PN  T+N+
Sbjct: 266 SKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNV 325

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI G    G M       +  ++++++   G  PD+ T+  LI+ +C+ G V+ G  ++ 
Sbjct: 326 LIDGFGKVGNM------RSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWE 379

Query: 384 RILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
            +     +P+  T+  LI       +I E  +F R +
Sbjct: 380 EMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHL 416



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 113/266 (42%), Gaps = 24/266 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  +     K         LF  +  +G+ P+ +T+N+LI+ F K+G +    V+
Sbjct: 283 PDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVM 342

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++L     PD VTFTSLI   C E  + +   L+ +++V     +V+TY  LIN LC+
Sbjct: 343 YEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCK 402

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
                 A N    + +      VV  P    Y+ +IDG CK  +   ANF+         
Sbjct: 403 ENRIREARNFLRHLKSSE----VV--PKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKC 456

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             +K+ F                LI G C   ++  A   F  +     +P+ +T N LI
Sbjct: 457 RPDKITFTI--------------LIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLI 502

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLN 351
             L   G  +E    +   L  ++LN
Sbjct: 503 SCLLKAGMPNEASQIKQAAL--QKLN 526



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 7/175 (4%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD M++    +P   +FN+L     K  +  + + +++++ L G  PD  T+  LI+ +
Sbjct: 307 LFDEMVS-SGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGY 365

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G V+ G  +   +     +P+  T+  LI  LC E+RI EA      L+        
Sbjct: 366 CREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKP 425

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           F YN +I+G C+ G    A  +  EM          C PD IT++ +I G C + 
Sbjct: 426 FIYNPVIDGFCKAGKVDEANFIVAEMQEKK------CRPDKITFTILIIGNCMKG 474



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 6/148 (4%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EG++     N+ L +++ M  +R   P V ++ +L   L K        +  + L  + +
Sbjct: 368 EGEV-----NQGLKLWEEM-KVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEV 421

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P  + YN +I+ FCK G+V     ++  +      PD +TFT LI   C + R++EA +
Sbjct: 422 VPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAIS 481

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTG 209
            F K+    C  D  T N+LI+ L + G
Sbjct: 482 TFYKMIEINCVPDEITINSLISCLLKAG 509


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 165/346 (47%), Gaps = 32/346 (9%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +  +AL +F Y +     +P V  +N L   L     +  +  L+  +   GL P+ +TY
Sbjct: 124 SAEQALKMF-YRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTY 182

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NIL+   CK  RV     +   +      PDAVT+T+++  LC   +I +A  L  + + 
Sbjct: 183 NILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKP 242

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
                 V  YN LI+G+C+ G   VA+ L  EM + NG      +P+ ++YS II+ LC 
Sbjct: 243 -----SVPVYNALIDGMCKEGRIEVAIKLLGEMMD-NG-----VDPNVVSYSCIINSLCV 291

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
                  F  F+ M        +  + PL++         C + G     KL  A +L++
Sbjct: 292 SGNVELAFALFAQMFLRGCDANIHTFTPLIKG--------CFMRG-----KLYEALDLWK 338

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            + + G  PNVV YN LI GLC++G ++E         +  ++  +G  P++ TY+ILI+
Sbjct: 339 LMIQDGCEPNVVAYNTLIHGLCSNGSLEEA------LQVCDQMQRSGCLPNVTTYSILID 392

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
            F K G +      + R++     P+ VT+T ++ +L  NS F Q 
Sbjct: 393 GFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQA 438



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 154/345 (44%), Gaps = 49/345 (14%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N L   + K    +  + L   +   G+ P+  +Y+ +IN  C  G V   F 
Sbjct: 241 KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFA 300

Query: 147 VLGRI-LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           +  ++ LR C   +  TFT LIK      ++ EA  L+  +   GCE +V  YNTLI+GL
Sbjct: 301 LFAQMFLRGC-DANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C  G    AL + ++M          C P+  TYS +IDG  K   S + +G S      
Sbjct: 360 CSNGSLEEALQVCDQMQRSG------CLPNVTTYSILIDGFAK---SGDLVGAS-----E 405

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             N+M  +     V    + + C++D LCK S    A  L + +   G  PN +T+N  I
Sbjct: 406 TWNRMISHGCRPNV----VTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFI 461

Query: 326 RGLCNDGQMD-----------------------------ETKHYETVFLLFKRLNSTGLF 356
           +GLC +G+++                                 YE  F LF+ + +  L 
Sbjct: 462 KGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQ 521

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           P+L TYN ++  F + G +     +FG+ L     PD++T+ ++I
Sbjct: 522 PNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMI 566



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 141/349 (40%), Gaps = 58/349 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY------------------- 128
           P V ++NIL   L K    D    LF  ++  G  PD  TY                   
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236

Query: 129 -----------NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177
                      N LI+  CK GR+     +LG ++ +   P+ V+++ +I  LC    + 
Sbjct: 237 AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVE 296

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
            A ALF ++ + GC+ ++ T+  LI G    G    AL+L++ M          CEP+ +
Sbjct: 297 LAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDG------CEPNVV 350

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCK 295
            Y+T+I GLC           S   +    ++M       R  CL     +  LIDG  K
Sbjct: 351 AYNTLIHGLCSNG--------SLEEALQVCDQMQ------RSGCLPNVTTYSILIDGFAK 396

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
              L  A E +  +   G  PNVVTY  ++  LC +   D+         L +++   G 
Sbjct: 397 SGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANS------LVEKMTLEGC 450

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            P+  T+N  I   C  GRV     +  R+      P+  T+  L+  L
Sbjct: 451 TPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDAL 499



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 140/331 (42%), Gaps = 61/331 (18%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL ++  M+      P V ++N L   L      +  L +  ++  +G  P+  TY+IL
Sbjct: 332 EALDLWKLMIQ-DGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSIL 390

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ F K G +        R++     P+ VT+T ++  LC  S   +A +L  K+ + GC
Sbjct: 391 IDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGC 450

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T+NT I GLC  G    A+ L E M  G+G     C P+  TY+ ++D       
Sbjct: 451 TPNTITFNTFIKGLCGNGRVEWAMKLLERM-QGHG-----CLPNITTYNELLD------- 497

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                    L +++K + A  LFQ +  
Sbjct: 498 ----------------------------------------ALFRMNKYEEAFGLFQEIEA 517

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
             L PN+VTYN ++ G    G M E         LF +    G  PD  TYN +I+ +CK
Sbjct: 518 RNLQPNLVTYNTVLYGFSRAGMMGEA------LQLFGKALVRGTAPDSITYNTMIHAYCK 571

Query: 372 IGRVSSGFVIFGRILP-SCFTPDAVTFTSLI 401
            G+V     +  R+     + PD +T+TSLI
Sbjct: 572 QGKVKIAAQLVERVSSMKEWHPDIITYTSLI 602



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 117/285 (41%), Gaps = 62/285 (21%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V ++  +   L K   +D   SL +++ L G  P+  T+N  I   C  GRV     
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMK 475

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L R+      P+  T+  L+  L   ++  EA  LF ++     + ++ TYNT++ G  
Sbjct: 476 LLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFS 535

Query: 207 RTGHTIVALNLF-EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           R G    AL LF + +  G         PD+ITY+T+I   CK+                
Sbjct: 536 RAGMMGEALQLFGKALVRGTA-------PDSITYNTMIHAYCKQG--------------- 573

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR-AGLMPNVVTYNIL 324
                                           K+KIA +L + +       P+++TY  L
Sbjct: 574 --------------------------------KVKIAAQLVERVSSMKEWHPDIITYTSL 601

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
           I G CN   ++E   +     L K +N  G+ P+  T+N L+ CF
Sbjct: 602 IWGACNWMNIEEAMAF-----LDKAINQ-GICPNFATWNALVRCF 640



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F   +  R  +P + ++N +    ++       L LF +  + G  PD  TYN +
Sbjct: 507 EAFGLFQE-IEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTM 565

Query: 132 INCFCKMGRVSHGFVVLGRILR-SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           I+ +CK G+V     ++ R+     + PD +T+TSLI   C    I EA A   K    G
Sbjct: 566 IHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQG 625

Query: 191 CELDVFTYNTLI 202
              +  T+N L+
Sbjct: 626 ICPNFATWNALV 637


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 149/315 (47%), Gaps = 26/315 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L   L K  +  +   L   + + G  P+  TY ILI+ FCK GR+     V
Sbjct: 387 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 446

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +       +AV +  LI  LC + ++ +A  +F  +   GC+ D+FT+N+LI GLC+
Sbjct: 447 LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 506

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 AL L+++M       GV+   + ITY+T+I    +          +   +   +
Sbjct: 507 VNKFEEALGLYQDML----LEGVIA--NTITYNTLIHAFLRRG--------AMQEALKLV 552

Query: 268 NKMAFYF-PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           N M F   PL  +      +  LI  LC+   ++    LF+ +   GL PN ++ NILI 
Sbjct: 553 NDMLFRGCPLDDI-----TYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILIN 607

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G +     +       + +   GL PD+ TYN LIN  CK GR      +F ++ 
Sbjct: 608 GLCRTGNIQHALEF------LRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQ 661

Query: 387 PSCFTPDAVTFTSLI 401
                PDA+T+ +LI
Sbjct: 662 VEGICPDAITYNTLI 676



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 35/321 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN     L K         L  R+ L G  P+ +TY +L++  C+MG+V    ++
Sbjct: 285 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARML 344

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEA-AALFTKLRVFGCELDVFTYNTLINGLC 206
           L ++      P+ V F +LI    +  R+ EA A +   +   GC  D+FTYNTLI GLC
Sbjct: 345 LNKVP----NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLC 400

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G+ + A  L  EM          CEP+ ITY+ +ID  CKE             + + 
Sbjct: 401 KKGYLVSARELMNEMQIKG------CEPNVITYTILIDRFCKEG--------RLEEARNV 446

Query: 267 LNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           L++M+        + L LN   + CLI  LCK  K++ A  +F  +   G  P++ T+N 
Sbjct: 447 LDEMSG-------KGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 499

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GLC      +   +E    L++ +   G+  +  TYN LI+ F + G +     +  
Sbjct: 500 LIFGLC------KVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 553

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +L      D +T+  LIK L
Sbjct: 554 DMLFRGCPLDDITYNGLIKAL 574



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 143/324 (44%), Gaps = 30/324 (9%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           + ++   P V ++ IL     K    +   ++   ++  GL  +   YN LI+  CK  +
Sbjct: 415 MQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEK 474

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V     + G +      PD  TF SLI  LC  ++  EA  L+  + + G   +  TYNT
Sbjct: 475 VQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNT 534

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FS 259
           LI+   R G    AL L  +M          C  D ITY+ +I  LC+       L  F 
Sbjct: 535 LIHAFLRRGAMQEALKLVNDMLFRG------CPLDDITYNGLIKALCRAGNIEKGLALFE 588

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPN 317
            M S   LN                N  C  LI+GLC+   ++ A E  + +   GL P+
Sbjct: 589 DMMS-KGLNPN--------------NISCNILINGLCRTGNIQHALEFLRDMIHRGLTPD 633

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           +VTYN LI GLC  G+  E  +      LF +L   G+ PD  TYN LI+  CK G    
Sbjct: 634 IVTYNSLINGLCKTGRAQEALN------LFDKLQVEGICPDAITYNTLISWHCKEGMFDD 687

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
             ++  R + S F P+ VT+  L+
Sbjct: 688 AHLLLSRGVDSGFIPNEVTWYILV 711



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 165/378 (43%), Gaps = 54/378 (14%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           G+   + PN    VF  ML+   S P V +F ++   L      D+  +L K +   G  
Sbjct: 195 GNCPKVVPN----VFYEMLSKGIS-PTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCV 249

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+   Y  LI+   K+GRV+    +L  +L     PD  TF   I  LC   RI EAA L
Sbjct: 250 PNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKL 309

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN----------------- 225
             ++ + G   + FTY  L++GLCR G    A  L  ++ N N                 
Sbjct: 310 VDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRL 369

Query: 226 ---------GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
                        V C PD  TY+T+I GLCK+           +++   +N+M     +
Sbjct: 370 DEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKG--------YLVSARELMNEMQ----I 417

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
              +   + +  LID  CK  +L+ AR +   +   GL  N V YN LI  LC D ++ +
Sbjct: 418 KGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQD 477

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
             +      +F  ++S G  PD++T+N LI   CK+ +      ++  +L      + +T
Sbjct: 478 ALN------MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTIT 531

Query: 397 FTSLIKILEINSFFRQVA 414
           + +L     I++F R+ A
Sbjct: 532 YNTL-----IHAFLRRGA 544



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 157/361 (43%), Gaps = 33/361 (9%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P +A  +   M  +    P   S+N++   L        V ++F  +   G+ P  YT+ 
Sbjct: 162 PGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFG 221

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +++   C +  V     +L  + R    P+A+ + +LI  L    R+ E   L  ++ + 
Sbjct: 222 VVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLM 281

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK- 248
           GC  DV T+N  I+GLC+      A  L + M            P++ TY  ++ GLC+ 
Sbjct: 282 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRG------FTPNSFTYGVLMHGLCRM 335

Query: 249 -----------EAGSANFLGFSCM----ASFSALN--KMAFYFPLVRVQC--LCLNFLCL 289
                      +  + N + F+ +     S   L+  K   +  ++ V C      +  L
Sbjct: 336 GKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTL 395

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           I GLCK   L  AREL   +   G  PNV+TY ILI   C +G+++E ++      +   
Sbjct: 396 ILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARN------VLDE 449

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-KILEINS 408
           ++  GL  +   YN LI+  CK  +V     +FG +      PD  TF SLI  + ++N 
Sbjct: 450 MSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK 509

Query: 409 F 409
           F
Sbjct: 510 F 510



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 129/303 (42%), Gaps = 60/303 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +AL +F  M + +  +P + +FN L   L K   ++  L L++ + L G+  +  TYN 
Sbjct: 476 QDALNMFGDM-SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNT 534

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F + G +     ++  +L      D +T+  LIK LC    I +  ALF  +   G
Sbjct: 535 LIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKG 594

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +  + N LINGLCRTG+   AL    +M +          PD +TY+++I+GLCK  
Sbjct: 595 LNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG------LTPDIVTYNSLINGLCK-T 647

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G A            ALN                                    LF  L 
Sbjct: 648 GRAQ----------EALN------------------------------------LFDKLQ 661

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+ +TYN LI   C +G  D+        LL  R   +G  P+  T+ IL++ F 
Sbjct: 662 VEGICPDAITYNTLISWHCKEGMFDDAH------LLLSRGVDSGFIPNEVTWYILVSNFI 715

Query: 371 KIG 373
           K G
Sbjct: 716 KEG 718


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 152/342 (44%), Gaps = 33/342 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA   FD ML  R   P + ++N+L     K    D  L LF  +   G  P   TYNI
Sbjct: 152 QEARSFFDAMLE-RGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNI 210

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  C  GRV     +  ++     +PD+ T+++L+  L    R+ EA  +F ++   G
Sbjct: 211 LLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRG 270

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             +D+  YN+L+  L + G+      L +EM+           PDA +++TI+D L    
Sbjct: 271 VAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKG------FHPDAFSFNTIMDAL---- 320

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELF 306
           G AN       A+     +M        V+  C    +++  LID   +      AR++ 
Sbjct: 321 GKAN----KPDAAREVFARM--------VESGCKPDLISYNILIDSYARFGDAAQARQML 368

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           + +  AG +P   TYN LI  L  DGQ+DE       F + + + + G  PD+ TYN L+
Sbjct: 369 EEMVEAGFIPETKTYNSLIHWLATDGQVDEA------FAVLEEMETAGCRPDVVTYNRLM 422

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
           +   K G       +F ++      PD +++   I  L  + 
Sbjct: 423 DMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDD 464



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 151/336 (44%), Gaps = 35/336 (10%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++N+L     ++   D+ + +F+ + + G  PD YTY  L+N   K GRV         +
Sbjct: 102 AYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAM 161

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           L    TP+  T+  L+       ++  A  LF +++  G +  V TYN L++ LC  G  
Sbjct: 162 LERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRV 221

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG----------------SANF 255
             A  LF +M  G+G     C PD+ TYST+++GL K                   + + 
Sbjct: 222 GAARKLFHKM-TGDG-----CSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDL 275

Query: 256 LGF-SCMASFSALNKMAFYFPLVRVQCL------CLNFLCLIDGLCKISKLKIARELFQS 308
           + + S +A+ +    M   + L++            +F  ++D L K +K   ARE+F  
Sbjct: 276 VNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFAR 335

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +  +G  P++++YNILI      G   + +       + + +   G  P+  TYN LI+ 
Sbjct: 336 MVESGCKPDLISYNILIDSYARFGDAAQARQ------MLEEMVEAGFIPETKTYNSLIHW 389

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               G+V   F +   +  +   PD VT+  L+ +L
Sbjct: 390 LATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDML 425



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 120/277 (43%), Gaps = 30/277 (10%)

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  + +  +    F +  +      +P    FT LI  L        A  ++ KL   G
Sbjct: 36  LITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKG 95

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+LD F YN LI    R+G    A+ +F EM           EPD  TY  +++ L K A
Sbjct: 96  CQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKG------SEPDEYTYGFLVNALGK-A 148

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQ 307
           G               + +   +F  +  + L  N   +  L+D   K+ +L +A  LF 
Sbjct: 149 GR--------------VQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFA 194

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            + R G  P+VVTYNIL+  LC+ G++   +       LF ++   G  PD YTY+ L+N
Sbjct: 195 EMKRRGFQPSVVTYNILLDALCSAGRVGAARK------LFHKMTGDGCSPDSYTYSTLVN 248

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              K GRV     +F  ++      D V + SL+  L
Sbjct: 249 GLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATL 285



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 130/317 (41%), Gaps = 59/317 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F  L   L  +  ++    ++K+L   G   DR+ YN+LI  F + G++      
Sbjct: 63  PTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDS---- 118

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
                                          A  +F ++++ G E D +TY  L+N L +
Sbjct: 119 -------------------------------AMEMFREMKIKGSEPDEYTYGFLVNALGK 147

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A + F+ M     E G+   P+  TY+ ++D   K       LG      F+ +
Sbjct: 148 AGRVQEARSFFDAML----ERGLT--PNIPTYNLLMDAFRKVGQLDMALGL-----FAEM 196

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +  F       Q   + +  L+D LC   ++  AR+LF  +   G  P+  TY+ L+ G
Sbjct: 197 KRRGF-------QPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNG 249

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           L   G+++E         +F+ +   G+  DL  YN L+    K G +   + +   +  
Sbjct: 250 LGKSGRVEEAHK------VFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSR 303

Query: 388 SCFTPDAVTFTSLIKIL 404
             F PDA +F +++  L
Sbjct: 304 KGFHPDAFSFNTIMDAL 320



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 118/280 (42%), Gaps = 27/280 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  VF  M++ R     + ++N L   LAK  + D V  L K ++  G  PD +++N 
Sbjct: 257 EEAHKVFREMVD-RGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNT 315

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++   K  +      V  R++ S   PD +++  LI          +A  +  ++   G
Sbjct: 316 IMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAG 375

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +  TYN+LI+ L   G    A  + EEM          C PD +TY+ ++D L K  
Sbjct: 376 FIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAG------CRPDVVTYNRLMDMLGKRG 429

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVR---VQCLCLNFLCLIDGLCKISKLKIARELFQ 307
            +                + A  F  ++   V+   L++   IDGL    +L  A  LF+
Sbjct: 430 EN---------------QRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFK 474

Query: 308 SLPRAGLMPNVVTYNILIRGL--CNDGQMDETKHYETVFL 345
            +   G   +   Y ILIR      D +++    +E+ F+
Sbjct: 475 DMKAVGCPVDKAMYRILIRAAHRAGDTELEAQLKHESQFM 514



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 7/174 (4%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P+ A  VF  M+     +P + S+NIL    A+         + + +   G  P+  TYN
Sbjct: 326 PDAAREVFARMVE-SGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYN 384

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI+     G+V   F VL  +  +   PD VT+  L+  L        AA LF +++  
Sbjct: 385 SLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDK 444

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
           G E D  +Y   I+GL        AL LF++M        V C  D   Y  +I
Sbjct: 445 GVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMK------AVGCPVDKAMYRILI 492


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 180/420 (42%), Gaps = 77/420 (18%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTK-- 104
            LE+ + ER +S       S+  ++AL +FD +L+   +RP  V +FN L   +++ +  
Sbjct: 14  ELERIIAERARSR------SLGLDDALKLFDELLHH--ARPASVRAFNHLLTAVSRARCS 65

Query: 105 -HYDTVLSLFKRLNLT---GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 160
              +  +S F R+       + P+  TY+ILI  FC+MG + HGF   G IL++ +  D 
Sbjct: 66  SASELAVSHFNRMVRECSDKVAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDH 125

Query: 161 VTFTSLIKDLCAESRIMEAA-ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
           +    L+K LC   R+ EA   L  ++   GC  D  +Y  L+ GLC       AL L  
Sbjct: 126 IAINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLH 185

Query: 220 EMANGNGE--------FGVVCE------------------------PDAITYSTIIDGLC 247
            MA+ +G         + +V                          PD +TY+T+IDGLC
Sbjct: 186 MMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLC 245

Query: 248 K----EAGSANFL-------------------GFSCMASFSALNKMAFYFPLVRVQCLCL 284
           K    +     F                    G+  +  +  + +M        ++  C 
Sbjct: 246 KAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCY 305

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  L++ LCK  + + AR  F S+ R G+ P V TY ILI G    G + E   +  + 
Sbjct: 306 TYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLM 365

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +        GL PD + +NI  + + K G +     IF ++     +P+ V + +LI  L
Sbjct: 366 V------ENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDAL 419



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 141/322 (43%), Gaps = 34/322 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    FNI F   AK    D  + +F ++   GL P+   Y  LI+  CK+GRV    V 
Sbjct: 372 PDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVK 431

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++    TP+ V F SL+  LC   +   A  L  ++   G   +   +NTLI  LC 
Sbjct: 432 FNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCN 491

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-----KEAGSANFLGFSCMA 262
            G  +    L + M +      V   PDA +Y+ +I G C      EA       F  M 
Sbjct: 492 VGRVMEGRRLIDLMEH------VGVRPDAFSYTPLISGYCLTGRTDEAEKV----FDGMV 541

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
           S             + +    + +  L+ G C  S++  A  LF+ + R G+ P VVTYN
Sbjct: 542 S-------------IGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYN 588

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            ++ GL       +TK +     L+  + ++G   D+YTYNI++N  CK   V   F +F
Sbjct: 589 TILHGLF------QTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMF 642

Query: 383 GRILPSCFTPDAVTFTSLIKIL 404
             +       + +TFT +I  L
Sbjct: 643 QSLCSKGLQLNIITFTIMIGAL 664



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 139/317 (43%), Gaps = 30/317 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  +   L K + +D    +F+++   G  P+ YTYN LI+ +  +G+      +
Sbjct: 232 PDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQM 291

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      PD  T+ SL+  LC   R  EA   F  +   G +  V TY  LI+G   
Sbjct: 292 LEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYAT 351

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  +  ++ F ++   NG       PD   ++                 FS  A    +
Sbjct: 352 KG-ALSEMHSFLDLMVENG-----LSPDHHIFNIF---------------FSAYAKCGMI 390

Query: 268 NKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           +K    F  +R   L    +N+  LID LCK+ ++  A   F  +   G+ PN+V +N L
Sbjct: 391 DKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSL 450

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + GLC   + +  +      L+++ L+  G+ P+   +N LI   C +GRV  G  +   
Sbjct: 451 VYGLCTVDKWERAEE-----LVYEMLDQ-GICPNAVFFNTLICNLCNVGRVMEGRRLIDL 504

Query: 385 ILPSCFTPDAVTFTSLI 401
           +      PDA ++T LI
Sbjct: 505 MEHVGVRPDAFSYTPLI 521



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 147/357 (41%), Gaps = 36/357 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  VF  M++    +P   ++N L         +  V+ + + ++  GL PD YTY  
Sbjct: 251 DRAEGVFQQMID-NGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGS 309

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  CK GR          ++R    P   T+  LI     +  + E  +    +   G
Sbjct: 310 LLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENG 369

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
              D   +N   +   + G    A+++F +M     + G+   P+ + Y  +ID LCK  
Sbjct: 370 LSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMR----QHGL--SPNVVNYGALIDALCKLG 423

Query: 249 --------------EAGSANFLGFSCMA-SFSALNKMAFYFPLVRV---QCLCLN---FL 287
                         E  + N + F+ +      ++K      LV     Q +C N   F 
Sbjct: 424 RVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFN 483

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI  LC + ++   R L   +   G+ P+  +Y  LI G C  G+ DE +       +F
Sbjct: 484 TLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEK------VF 537

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             + S GL P   TYN L++ +C   R+   + +F  +L    TP  VT+ +++  L
Sbjct: 538 DGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGL 594



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 125/323 (38%), Gaps = 59/323 (18%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   S+  L      T   D    +F  +   GL P   TYN L++ +C   R+   + 
Sbjct: 511 RPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYC 570

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +LR   TP  VT+ +++  L    R  EA  L+  +   G + D++TYN ++NGLC
Sbjct: 571 LFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLC 630

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           ++     A  +F+                          LC +    N + F+ M     
Sbjct: 631 KSNCVDEAFKMFQS-------------------------LCSKGLQLNIITFTIM----- 660

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                                  I  L K  + + A +LF ++P  GL+PNVVTY ++  
Sbjct: 661 -----------------------IGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAE 697

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            L  +G ++E         LF  +   G  P+    N L+      G +S       ++ 
Sbjct: 698 NLIEEGSLEEFDS------LFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLD 751

Query: 387 PSCFTPDAVTFTSLIKILEINSF 409
              F+ +A T + L+ I   + +
Sbjct: 752 ERNFSVEASTTSLLMSIFTSDEY 774


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 134/291 (46%), Gaps = 24/291 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   + + L   L K    D    L  ++   G  P+ + YN LIN  CK G +    ++
Sbjct: 328 PTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELL 387

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      P+ +T++ LI   C   R+  A + F ++   G    V+ YN+LING C+
Sbjct: 388 YSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCK 447

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A +LF EM N     GV  EP A T++++I G CK+             +F   
Sbjct: 448 FGDLSAAESLFIEMTNK----GV--EPTATTFTSLISGYCKD--------LQVQKAFKLY 493

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           NKM        V      F  LI GLC  +K+  A ELF  L    + P  VTYN+LI G
Sbjct: 494 NKMIDNGITPNV----YTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEG 549

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
            C DG++D+       F L + ++  GL PD YTY  LI+  C  GRVS  
Sbjct: 550 YCRDGKIDKA------FELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKA 594



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 147/332 (44%), Gaps = 30/332 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD ++  R  +P   ++N+L     +    D    L + ++  GL PD YTY  L
Sbjct: 523 EASELFDELVE-RKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPL 581

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  C  GRVS     +  + +     + + +++L+   C E R+MEA +   ++   G 
Sbjct: 582 ISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGI 641

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            +D+  +  LI+G  +        +L ++M +          PD + Y+++ID   KE  
Sbjct: 642 NMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQG------LRPDNVIYTSMIDTYSKEGS 695

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSL 309
                 F C            +  +V  +C    + +  L++GLCK  ++  A  LF+ +
Sbjct: 696 FKK--AFEC------------WDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRM 741

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             A + PN +TY   +  L  +G M E        L        GL  +  T+NI+I  F
Sbjct: 742 QAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAML-------KGLLANTVTHNIIIRGF 794

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK+GR      +   +  +   PD VT+++LI
Sbjct: 795 CKLGRFHEATKVLSEMTENGIFPDCVTYSTLI 826



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 144/335 (42%), Gaps = 35/335 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++N+L   L K       + + + L   GL  D  TY  L+  FC++ +   G  ++ 
Sbjct: 260 IVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMD 319

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++   F+P     + L+  L  + +I +A  L  K+  FG   ++F YN LIN LC+ G
Sbjct: 320 EMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGG 379

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-----------SANFLGF 258
               A  L+  M+  N        P+ ITYS +ID  C+                + +G 
Sbjct: 380 DLDKAELLYSNMSLMN------LRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGE 433

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLN------------FLCLIDGLCKISKLKIARELF 306
           +  A  S +N    +  L   + L +             F  LI G CK  +++ A +L+
Sbjct: 434 TVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLY 493

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G+ PNV T+  LI GLC+  +M E         LF  L    + P   TYN+LI
Sbjct: 494 NKMIDNGITPNVYTFTALISGLCSTNKMAEASE------LFDELVERKIKPTEVTYNVLI 547

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +C+ G++   F +   +      PD  T+  LI
Sbjct: 548 EGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLI 582



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 150/356 (42%), Gaps = 54/356 (15%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++N+RP+     +++IL     ++   D  +S F R+   G+    Y YN LIN  CK G
Sbjct: 393 LMNLRPNG---ITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFG 449

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            +S    +   +      P A TFTSLI   C + ++ +A  L+ K+   G   +V+T+ 
Sbjct: 450 DLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFT 509

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGF 258
            LI+GLC T     A  LF+E+           +P  +TY+ +I+G C++      F   
Sbjct: 510 ALISGLCSTNKMAEASELFDELVERK------IKPTEVTYNVLIEGYCRDGKIDKAFELL 563

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
             M     +     Y P             LI GLC   ++  A++    L +  +  N 
Sbjct: 564 EDMHQKGLVPDTYTYRP-------------LISGLCSTGRVSKAKDFIDDLHKQNVKLNE 610

Query: 319 VTYNILIRGLCNDGQ-----------------MDETKHY------------ETVFLLFKR 349
           + Y+ L+ G C +G+                 MD   H             +T F L K 
Sbjct: 611 MCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKD 670

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG-RILPSCFTPDAVTFTSLIKIL 404
           ++  GL PD   Y  +I+ + K G     F  +   +   CF P+ VT+T+L+  L
Sbjct: 671 MHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECF-PNVVTYTALMNGL 725



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 162/368 (44%), Gaps = 45/368 (12%)

Query: 75  CVFDYMLN--MRPSRPPVTSFNILF-GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           CVF + L+   R        FN+L    +  ++ +D V+ + K +    L P+  T + L
Sbjct: 138 CVFSHFLDSYKRCKFSSTLGFNLLVQNYVLSSRIFDAVV-IVKLMFANNLLPEVRTLSAL 196

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N   K+ +    + +    + +   PD  T +++++ +C     + A      +   G 
Sbjct: 197 LNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGF 256

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--- 248
           +L + TYN LI+GLC+      A+ +   +  G G        D +TY T++ G C+   
Sbjct: 257 DLSIVTYNVLIHGLCKGDRVSEAVEVKRSLG-GKG-----LAADVVTYCTLVLGFCRLQQ 310

Query: 249 -EAG-----SANFLGFS-CMASFSAL-------NKMAFYFPLVRVQCLCLNFL------- 287
            EAG         LGFS   A+ S L        K+   + LV V+     F+       
Sbjct: 311 FEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELV-VKVGRFGFVPNLFVYN 369

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI+ LCK   L  A  L+ ++    L PN +TY+ILI   C  G++D    Y      F
Sbjct: 370 ALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISY------F 423

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----KI 403
            R+   G+   +Y YN LIN  CK G +S+   +F  +      P A TFTSLI    K 
Sbjct: 424 DRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKD 483

Query: 404 LEINSFFR 411
           L++   F+
Sbjct: 484 LQVQKAFK 491



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 7/143 (4%)

Query: 83  MRPSRPPVTSFNILFGC----LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           M+ +  P  S  I +GC    L K  +    + L   + L GL  +  T+NI+I  FCK+
Sbjct: 741 MQAANVPPNS--ITYGCFLDNLTKEGNMKEAIGLHHAM-LKGLLANTVTHNIIIRGFCKL 797

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           GR      VL  +  +   PD VT+++LI + C    +  +  L+  +   G E D+  Y
Sbjct: 798 GRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAY 857

Query: 199 NTLINGLCRTGHTIVALNLFEEM 221
           N LI G C  G    A  L ++M
Sbjct: 858 NLLIYGCCVNGELDKAFELRDDM 880



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 107/268 (39%), Gaps = 27/268 (10%)

Query: 140 RVSHGFVVLGRILRS---CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           R SH   V    L S   C     + F  L+++    SRI +A  +   +       +V 
Sbjct: 132 RESHPKCVFSHFLDSYKRCKFSSTLGFNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVR 191

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           T + L+NGL +    I    LF+E  N     GV   PD  T S ++  +C+     +FL
Sbjct: 192 TLSALLNGLLKVRKFITVWELFDESVNA----GV--RPDPYTCSAVVRSMCE---LKDFL 242

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
                     +    F   +V        +  LI GLCK  ++  A E+ +SL   GL  
Sbjct: 243 --RAKEKIRWMEANGFDLSIV-------TYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAA 293

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           +VVTY  L+ G C        + +E    L   +   G  P     + L++   K G++ 
Sbjct: 294 DVVTYCTLVLGFC------RLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKID 347

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             + +  ++    F P+   + +LI  L
Sbjct: 348 DAYELVVKVGRFGFVPNLFVYNALINSL 375


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 153/331 (46%), Gaps = 29/331 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  ++ R  RP V SFN L     ++K+ +    L   +    + PD +TY+ LI
Sbjct: 245 ARMVFD-EISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALI 303

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  RV     +   +      P+ VTFT+LI   C   +I  A   F  ++  G  
Sbjct: 304 NGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIR 363

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA-- 250
            D+ TYN LINGLCR G    A  L  EM  GNG      +PD IT++T++DG CK+   
Sbjct: 364 PDLITYNALINGLCRDGDLKEARKLLNEMI-GNG-----FKPDKITFTTLMDGCCKDGDM 417

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            SA  +    +     L+ +A              F  LI GLC+  +++ A  + + + 
Sbjct: 418 DSALEIKDRMVEEGIELDDVA--------------FTALISGLCRDGRVRDAERMLKDML 463

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            AG  P+  TY ++I   C  G +           L K +   G  P + TYN L+N FC
Sbjct: 464 SAGHKPDDPTYTMVIDCFCKKGDVKMGAK------LLKEMQRDGRVPGVVTYNALMNGFC 517

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G++ +  ++   +L     P+ +TF  L+
Sbjct: 518 KQGQMKNAKMLLHAMLNMEVVPNDITFNILL 548



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 152/326 (46%), Gaps = 31/326 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  FNIL     K         +F  ++  GL P   ++N LI+ +C+   V  GFV+
Sbjct: 224 PNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVL 283

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +     +PD  T+++LI  LC ESR+ EA  LF ++   G   +  T+ TLI+G C+
Sbjct: 284 KSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCK 343

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G   +AL  FE M +          PD ITY+ +I+GLC++             +   L
Sbjct: 344 HGKIDLALRNFEIMKDRG------IRPDLITYNALINGLCRDG--------DLKEARKLL 389

Query: 268 NKM-AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           N+M    F   ++      F  L+DG CK   +  A E+   +   G+  + V +  LI 
Sbjct: 390 NEMIGNGFKPDKI-----TFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALIS 444

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC DG++ + +       + K + S G  PD  TY ++I+CFCK G V  G  +   + 
Sbjct: 445 GLCRDGRVRDAER------MLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQ 498

Query: 387 PSCFTPDAVTFTSLIKILEINSFFRQ 412
                P  VT+ +L     +N F +Q
Sbjct: 499 RDGRVPGVVTYNAL-----MNGFCKQ 519



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 136/304 (44%), Gaps = 30/304 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD M  M    P   +F  L     K    D  L  F+ +   G+ PD  TYN L
Sbjct: 314 EANGLFDEMCEMGLV-PNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNAL 372

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  C+ G +     +L  ++ + F PD +TFT+L+   C +  +  A  +  ++   G 
Sbjct: 373 INGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGI 432

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           ELD   +  LI+GLCR G    A  + ++M +   +      PD  TY+ +ID  CK+  
Sbjct: 433 ELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHK------PDDPTYTMVIDCFCKKGD 486

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
               +G   +       ++    P V      + +  L++G CK  ++K A+ L  ++  
Sbjct: 487 VK--MGAKLLKEMQRDGRV----PGV------VTYNALMNGFCKQGQMKNAKMLLHAMLN 534

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN-STGLFPDLYTYNILINCFC 370
             ++PN +T+NIL+ G C  G   +          FK  N   GL  D  +Y  L+N   
Sbjct: 535 MEVVPNDITFNILLDGHCKHGSSVD----------FKIFNGEKGLVSDYASYTALVNESI 584

Query: 371 KIGR 374
           KI +
Sbjct: 585 KISK 588



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 26/214 (12%)

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           +G   +V+ +N L++G C+ G  + A  +F+E++           P  ++++T+I G C+
Sbjct: 220 YGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRG------LRPSVVSFNTLISGYCR 273

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
                  F+  S M S              R+      +  LI+GLCK S+++ A  LF 
Sbjct: 274 SKNVEEGFVLKSVMES-------------ERISPDVFTYSALINGLCKESRVEEANGLFD 320

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +   GL+PN VT+  LI G C  G++D           F+ +   G+ PDL TYN LIN
Sbjct: 321 EMCEMGLVPNGVTFTTLIDGQCKHGKID------LALRNFEIMKDRGIRPDLITYNALIN 374

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             C+ G +     +   ++ + F PD +TFT+L+
Sbjct: 375 GLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLM 408


>gi|255660976|gb|ACU25657.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 376

 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 152/317 (47%), Gaps = 38/317 (11%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
            V+SFN +   L      D V+S+++ +N +G   D  TY IL++ FCK G +     VL
Sbjct: 58  SVSSFNTMMRGLFDNGKVDEVISIWELMNESGFVEDSRTYGILVHGFCKNGYIDKSLHVL 117

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
               +     DA  ++++I  LC E+ +  A ++   +   GC+ +V  YNTLINGL   
Sbjct: 118 EMAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGA 177

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                A+ +F EM        + C P  ITY+T+I+G CK                   N
Sbjct: 178 SKFEDAIRVFREMGT------MHCSPTIITYNTLINGFCK-------------------N 212

Query: 269 KM-AFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
           KM    + LV+      +    + +  L++GLC   K+  A +L+  +   G  P+V  +
Sbjct: 213 KMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCLDHKVARALQLWNQVTSKGFKPDVQMH 272

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           NILIRGLC+ G+M      +    L+  +N     P+L ++N L+  F K G + +  VI
Sbjct: 273 NILIRGLCSVGKM------QLALSLYFDMNLWKCAPNLVSHNTLMEGFYKDGDIRNALVI 326

Query: 382 FGRILPSCFTPDAVTFT 398
           + RIL +   PD +++ 
Sbjct: 327 WARILRNGLEPDIISYN 343



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 141/300 (47%), Gaps = 29/300 (9%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YNI++N + ++ ++   F  L  ++ S       +F ++
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNIMLNGYFRVAKIKDCFE-LWEMMGSEGNRSVSSFNTM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  +   G   D  TY  L++G C+ G+   +L++ E MA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMNESGFVEDSRTYGILVHGFCKNGYIDKSLHVLE-MAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCL 284
             GV+   DA  YS +I+GLCKEA        +   + S LN M  +   P V V     
Sbjct: 125 --GVL---DAFAYSAMINGLCKEA--------NLDRAVSVLNGMIKSGCKPNVHV----- 166

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  LI+GL   SK + A  +F+ +      P ++TYN LI G C      + K +   +
Sbjct: 167 -YNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGFC------KNKMFGEAY 219

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L K L   GL P + TY++L+   C   +V+    ++ ++    F PD      LI+ L
Sbjct: 220 NLVKELLDKGLDPGVITYSMLMEGLCLDHKVARALQLWNQVTSKGFKPDVQMHNILIRGL 279



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 113/269 (42%), Gaps = 25/269 (9%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV +  ++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNIMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++NT++ GL   G     ++++E M     E G V   D+ TY  ++ G CK       
Sbjct: 60  SSFNTMMRGLFDNGKVDEVISIWELM----NESGFV--EDSRTYGILVHGFCKNGYIDKS 113

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L    MA        AF +              +I+GLCK + L  A  +   + ++G  
Sbjct: 114 LHVLEMAEQKGGVLDAFAYS------------AMINGLCKEANLDRAVSVLNGMIKSGCK 161

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           PNV  YN LI GL           +E    +F+ + +    P + TYN LIN FCK    
Sbjct: 162 PNVHVYNTLINGLVG------ASKFEDAIRVFREMGTMHCSPTIITYNTLINGFCKNKMF 215

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              + +   +L     P  +T++ L++ L
Sbjct: 216 GEAYNLVKELLDKGLDPGVITYSMLMEGL 244



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 53/243 (21%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N L   L     ++  + +F+ +      P   TYN LIN FCK       + 
Sbjct: 161 KPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGFCKNKMFGEAYN 220

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  +L     P  +T++ L++ LC + ++  A  L+ ++   G + DV  +N LI GLC
Sbjct: 221 LVKELLDKGLDPGVITYSMLMEGLCLDHKVARALQLWNQVTSKGFKPDVQMHNILIRGLC 280

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G   +AL+L+ +M          C P+ ++++T+++G  K+    N            
Sbjct: 281 SVGKMQLALSLYFDMNLWK------CAPNLVSHNTLMEGFYKDGDIRN------------ 322

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                                              A  ++  + R GL P++++YNI + 
Sbjct: 323 -----------------------------------ALVIWARILRNGLEPDIISYNITLE 347

Query: 327 GLC 329
           GLC
Sbjct: 348 GLC 350



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 9/177 (5%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ VF  M  M  S P + ++N L     K K +    +L K L   GL P   TY++L
Sbjct: 182 DAIRVFREMGTMHCS-PTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSML 240

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   C   +V+    +  ++    F PD      LI+ LC+  ++  A +L+  + ++ C
Sbjct: 241 MEGLCLDHKVARALQLWNQVTSKGFKPDVQMHNILIRGLCSVGKMQLALSLYFDMNLWKC 300

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEE-MANGNGEFGVVCEPDAITYSTIIDGLC 247
             ++ ++NTL+ G  + G    AL ++   + NG        EPD I+Y+  ++GLC
Sbjct: 301 APNLVSHNTLMEGFYKDGDIRNALVIWARILRNG-------LEPDIISYNITLEGLC 350



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V   NIL   L         LSL+  +NL    P+  ++N L+  F K G + +  V
Sbjct: 266 KPDVQMHNILIRGLCSVGKMQLALSLYFDMNLWKCAPNLVSHNTLMEGFYKDGDIRNALV 325

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           +  RILR+   PD +++   ++ LC+ +RI +A
Sbjct: 326 IWARILRNGLEPDIISYNITLEGLCSCNRISDA 358


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 170/381 (44%), Gaps = 72/381 (18%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS-LFKRLNLTGLFPDRYTYNILINCFCKM 138
           +LN  P+ P    F IL     K+   D   + L+ ++   G  PD +T+N LI+  CK 
Sbjct: 335 LLNKVPT-PNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKK 393

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G +     ++  +  +  TP+ +T+T+L+   C ++++ EA  +  ++   G EL++  Y
Sbjct: 394 GLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGY 453

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL-- 256
           N L+  LC+ G    AL++  EM++        C+PD  T++T+I GLCK     + L  
Sbjct: 454 NVLLRALCKNGKVPKALDMLGEMSDKG------CKPDIFTFNTLIFGLCKVDRKEDALAL 507

Query: 257 -------------------------GFSCMASFSALNKMAF------------------- 272
                                    G +   +   +N M F                   
Sbjct: 508 YRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCK 567

Query: 273 ----------YFPLVRVQCLCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                     +  +VR   +  N  C  LI+GLC++ K+  A EL + +   GL P+VVT
Sbjct: 568 LGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVT 627

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN LI GLC  G + E       F LF +L + G+ PD  TYN LI   C+ G     ++
Sbjct: 628 YNSLINGLCKMGNIREA------FNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYL 681

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +  R + + F P+ VT+  L+
Sbjct: 682 LLLRGVENAFIPNDVTWYILV 702



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 157/336 (46%), Gaps = 36/336 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEAL + + M  M    P V +FN +   L +         L  R+   G  P+  TY +
Sbjct: 260 NEALKLLEEMFLM-GCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGV 318

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA-LFTKLRVF 189
           L+N  C++G+V    V+L ++     TP+ V FT LI       R+ EA A L+ K+   
Sbjct: 319 LMNGLCRVGKVDEAQVLLNKVP----TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKN 374

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCK 248
           GC  DVFT+NTLI+GLC+ G    A+++  +M ANG       C P+ ITY+T++DG CK
Sbjct: 375 GCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANG-------CTPNLITYTTLLDGFCK 427

Query: 249 --EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
             +   A ++     A    LN M +                L+  LCK  K+  A ++ 
Sbjct: 428 KNQLEEAGYVLNEMSAKGFELNIMGYNV--------------LLRALCKNGKVPKALDML 473

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G  P++ T+N LI GLC      +    E    L++ +   G+  +  TYN LI
Sbjct: 474 GEMSDKGCKPDIFTFNTLIFGLC------KVDRKEDALALYRDMLLDGVIANTVTYNTLI 527

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + F + G +     +   +L      D +T+  LIK
Sbjct: 528 HAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIK 563



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 156/365 (42%), Gaps = 49/365 (13%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           +++  P+ A  VF  ML+ +   P V +F ++   L      D   SL + +   G  P+
Sbjct: 184 VSANCPSVAANVFYEMLS-KGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPN 242

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
              Y  LI+   K  RV+    +L  +      PD  TF  +I  LC  +RI E A L  
Sbjct: 243 SVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVD 302

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNL-----------FEEMANGNGEFGVV-- 231
           ++   G   +  TY  L+NGLCR G    A  L           F  + NG  + G +  
Sbjct: 303 RMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDE 362

Query: 232 -------------CEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPL 276
                        C PD  T++T+I GLCK+   GSA  +     A+    N        
Sbjct: 363 ANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPN-------- 414

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
                  + +  L+DG CK ++L+ A  +   +   G   N++ YN+L+R LC +G++ +
Sbjct: 415 ------LITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPK 468

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                    +   ++  G  PD++T+N LI   CK+ R      ++  +L      + VT
Sbjct: 469 A------LDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVT 522

Query: 397 FTSLI 401
           + +LI
Sbjct: 523 YNTLI 527



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 139/336 (41%), Gaps = 34/336 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   S+N++   L          ++F  +   G+ P  YT+ +++   C +  V +   
Sbjct: 170 EPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACS 229

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  + +    P++V + +LI  L    R+ EA  L  ++ + GC  DV T+N +I GLC
Sbjct: 230 LLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLC 289

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFL-------- 256
           R         L + M            P+ ITY  +++GLC+  +   A  L        
Sbjct: 290 RLNRIHEGAKLVDRMLFRG------FTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPN 343

Query: 257 ---------GFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIAREL 305
                    G+         N    Y  +++  C      F  LI GLCK   +  A ++
Sbjct: 344 DVHFTILINGYVKSGRLDEANAF-LYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDM 402

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
              +   G  PN++TY  L+ G C   Q++E  +      +   +++ G   ++  YN+L
Sbjct: 403 VNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGY------VLNEMSAKGFELNIMGYNVL 456

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +   CK G+V     + G +      PD  TF +LI
Sbjct: 457 LRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLI 492



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 8/169 (4%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++N L     K    +  L LF  +    L P   + N+LIN  C++G+V +   +L  +
Sbjct: 557 TYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDM 616

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +     PD VT+ SLI  LC    I EA  LF KL+  G + D  TYNTLI   CR G  
Sbjct: 617 IHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMF 676

Query: 212 IVA-LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
             A L L   + N          P+ +T+  ++    KE G  N + F 
Sbjct: 677 DDAYLLLLRGVENA-------FIPNDVTWYILVSNFIKEIGKENGISFG 718



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V ++N L   L K  +     +LF +L   G+ PD  TYN LI   C+ G    
Sbjct: 619 RGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDD 678

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
            +++L R + + F P+ VT+  L+ +   E
Sbjct: 679 AYLLLLRGVENAFIPNDVTWYILVSNFIKE 708


>gi|255660952|gb|ACU25645.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 376

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 153/315 (48%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +     DA  ++++I  LC E+ +  A ++   +   GC+ +V  YNTLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        + C P  ITY+T+I+GLCK        G +       L+K
Sbjct: 179 KFEDAIRVFREMGT------MHCPPTIITYNTLINGLCKN----EMFGEAYNLVKELLDK 228

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                    +    + +  L+ GLC   K++ A +L+  +   G  P+V  +NILI GLC
Sbjct: 229 --------GLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+ RIL + 
Sbjct: 281 SVGKM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 390 FTPDAVTFTSLIKIL 404
             PD +++   +K L
Sbjct: 335 LEPDIISYNITLKGL 349



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 34/326 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K  + D  L + +     G   D + Y+ 
Sbjct: 76  DEVISIWELMKESGFVEDSIT-YGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+   + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A NL +E+ +         +P  ITYS ++ GLC + 
Sbjct: 195 CPPTIITYNTLINGLCKNEMFGEAYNLVKELLDKG------LDPGVITYSMLMKGLCLDH 248

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L       ++ +    F  P V++  +      LI GLC + K+++A  L+  + 
Sbjct: 249 KVERALQL-----WNQVTSKGFK-PDVQMHNI------LIHGLCSVGKMQLALSLYFDMN 296

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R    PN+V++N L+ G   DG +          +++ R+   GL PD+ +YNI +   C
Sbjct: 297 RWKCAPNLVSHNTLMEGFYKDGDI------RNALVIWARILRNGLEPDIISYNITLKGLC 350

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVT 396
              R+S   +         F  DAVT
Sbjct: 351 SCKRISDAIL---------FLHDAVT 367



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 148/319 (46%), Gaps = 36/319 (11%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K L  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKELVESKVSPDAVVYNAMLNGYFRVAKIKDCF-ELWEMMGSEGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++  EMA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL-EMAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-------SCMASFSALNKM-------AF 272
             GV+   DA  YS +I+GLCKEA     L          C  +    N +       + 
Sbjct: 125 --GVL---DAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASK 179

Query: 273 YFPLVRV-------QC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +   +RV        C    + +  LI+GLCK      A  L + L   GL P V+TY++
Sbjct: 180 FEDAIRVFREMGTMHCPPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSM 239

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++GLC D ++      E    L+ ++ S G  PD+  +NILI+  C +G++     ++ 
Sbjct: 240 LMKGLCLDHKV------ERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYF 293

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +      P+ V+  +L++
Sbjct: 294 DMNRWKCAPNLVSHNTLME 312



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 51/277 (18%), Positives = 99/277 (35%), Gaps = 60/277 (21%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   ++ S  +PDAV + +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYKELVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     ++++E M     E G V   D+ITY                
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMK----ESGFV--EDSITYGI-------------- 99

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                                            L+ G CK   +  +  + +   + G +
Sbjct: 100 ---------------------------------LVHGFCKNGYIDKSLHVLEMAEQKGGV 126

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ +I GLC +  +D          +   +  +G  P+++ YN LIN      + 
Sbjct: 127 LDAFAYSAMINGLCKEANLDRA------LSVLNGMIKSGCKPNVHVYNTLINGLAGASKF 180

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                +F  +      P  +T+ +LI  L  N  F +
Sbjct: 181 EDAIRVFREMGTMHCPPTIITYNTLINGLCKNEMFGE 217


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 149/315 (47%), Gaps = 26/315 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L   L K  +  +   L   + + G  P+  TY ILI+ FCK GR+     V
Sbjct: 405 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 464

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +       +AV +  LI  LC + ++ +A  +F  +   GC+ D+FT+N+LI GLC+
Sbjct: 465 LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 524

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 AL L+++M       GV+   + ITY+T+I    +          +   +   +
Sbjct: 525 VNKFEEALGLYQDML----LEGVIA--NTITYNTLIHAFLRRG--------AMQEALKLV 570

Query: 268 NKMAFYF-PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           N M F   PL  +      +  LI  LC+   ++    LF+ +   GL PN ++ NILI 
Sbjct: 571 NDMLFRGCPLDDI-----TYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILIN 625

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G +     +       + +   GL PD+ TYN LIN  CK GR      +F ++ 
Sbjct: 626 GLCRTGNIQHALEF------LRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQ 679

Query: 387 PSCFTPDAVTFTSLI 401
                PDA+T+ +LI
Sbjct: 680 VEGICPDAITYNTLI 694



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 35/321 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN     L K         L  R+ L G  P+ +TY +L++  C+MG+V    ++
Sbjct: 303 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARML 362

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEA-AALFTKLRVFGCELDVFTYNTLINGLC 206
           L ++      P+ V F +LI    +  R+ EA A +   +   GC  D+FTYNTLI GLC
Sbjct: 363 LNKVP----NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLC 418

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G+ + A  L  EM          CEP+ ITY+ +ID  CKE             + + 
Sbjct: 419 KKGYLVSARELMNEMQIKG------CEPNVITYTILIDRFCKEG--------RLEEARNV 464

Query: 267 LNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           L++M+        + L LN   + CLI  LCK  K++ A  +F  +   G  P++ T+N 
Sbjct: 465 LDEMSG-------KGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNS 517

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GLC      +   +E    L++ +   G+  +  TYN LI+ F + G +     +  
Sbjct: 518 LIFGLC------KVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 571

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +L      D +T+  LIK L
Sbjct: 572 DMLFRGCPLDDITYNGLIKAL 592



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 143/324 (44%), Gaps = 30/324 (9%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           + ++   P V ++ IL     K    +   ++   ++  GL  +   YN LI+  CK  +
Sbjct: 433 MQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEK 492

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V     + G +      PD  TF SLI  LC  ++  EA  L+  + + G   +  TYNT
Sbjct: 493 VQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNT 552

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FS 259
           LI+   R G    AL L  +M          C  D ITY+ +I  LC+       L  F 
Sbjct: 553 LIHAFLRRGAMQEALKLVNDMLFRG------CPLDDITYNGLIKALCRAGNIEKGLALFE 606

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPN 317
            M S   LN                N  C  LI+GLC+   ++ A E  + +   GL P+
Sbjct: 607 DMMS-KGLNPN--------------NISCNILINGLCRTGNIQHALEFLRDMIHRGLTPD 651

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           +VTYN LI GLC  G+  E  +      LF +L   G+ PD  TYN LI+  CK G    
Sbjct: 652 IVTYNSLINGLCKTGRAQEALN------LFDKLQVEGICPDAITYNTLISWHCKEGMFDD 705

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
             ++  R + S F P+ VT+  L+
Sbjct: 706 AHLLLSRGVDSGFIPNEVTWYILV 729



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 164/378 (43%), Gaps = 54/378 (14%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           G+   + PN    VF  ML+   S P V +F ++   L      D+  +L K +   G  
Sbjct: 213 GNCPKVVPN----VFYEMLSKGIS-PTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCV 267

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+   Y  LI+   K+GRV+    +L  +L     PD  TF   I  LC   RI EAA L
Sbjct: 268 PNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKL 327

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN----------------- 225
             ++ + G   + FTY  L++GLCR G    A  L  ++ N N                 
Sbjct: 328 VDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRL 387

Query: 226 ---------GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
                        V C PD  TY+T+I GLCK+           +++   +N+M      
Sbjct: 388 DEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKG--------YLVSARELMNEMQIKGCE 439

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
             V    + +  LID  CK  +L+ AR +   +   GL  N V YN LI  LC D ++ +
Sbjct: 440 PNV----ITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQD 495

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
             +      +F  ++S G  PD++T+N LI   CK+ +      ++  +L      + +T
Sbjct: 496 ALN------MFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTIT 549

Query: 397 FTSLIKILEINSFFRQVA 414
           + +L     I++F R+ A
Sbjct: 550 YNTL-----IHAFLRRGA 562



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 157/361 (43%), Gaps = 33/361 (9%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P +A  +   M  +    P   S+N++   L        V ++F  +   G+ P  YT+ 
Sbjct: 180 PGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFG 239

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +++   C +  V     +L  + R    P+A+ + +LI  L    R+ E   L  ++ + 
Sbjct: 240 VVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLM 299

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK- 248
           GC  DV T+N  I+GLC+      A  L + M            P++ TY  ++ GLC+ 
Sbjct: 300 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRG------FTPNSFTYGVLMHGLCRM 353

Query: 249 -----------EAGSANFLGFSCM----ASFSALN--KMAFYFPLVRVQC--LCLNFLCL 289
                      +  + N + F+ +     S   L+  K   +  ++ V C      +  L
Sbjct: 354 GKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTL 413

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           I GLCK   L  AREL   +   G  PNV+TY ILI   C +G+++E ++      +   
Sbjct: 414 ILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARN------VLDE 467

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-KILEINS 408
           ++  GL  +   YN LI+  CK  +V     +FG +      PD  TF SLI  + ++N 
Sbjct: 468 MSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNK 527

Query: 409 F 409
           F
Sbjct: 528 F 528



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 129/303 (42%), Gaps = 60/303 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +AL +F  M + +  +P + +FN L   L K   ++  L L++ + L G+  +  TYN 
Sbjct: 494 QDALNMFGDM-SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNT 552

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F + G +     ++  +L      D +T+  LIK LC    I +  ALF  +   G
Sbjct: 553 LIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKG 612

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +  + N LINGLCRTG+   AL    +M +          PD +TY+++I+GLCK  
Sbjct: 613 LNPNNISCNILINGLCRTGNIQHALEFLRDMIHRG------LTPDIVTYNSLINGLCK-T 665

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G A            ALN                                    LF  L 
Sbjct: 666 GRAQ----------EALN------------------------------------LFDKLQ 679

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+ +TYN LI   C +G  D+        LL  R   +G  P+  T+ IL++ F 
Sbjct: 680 VEGICPDAITYNTLISWHCKEGMFDDAH------LLLSRGVDSGFIPNEVTWYILVSNFI 733

Query: 371 KIG 373
           K G
Sbjct: 734 KEG 736


>gi|255660954|gb|ACU25646.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 375

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 153/315 (48%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +     DA  ++++I  LC E+ +  A  +   +   GC+ +V  YNTLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        + C P  ITY+T+I+GLCK+       G +       L+K
Sbjct: 179 KFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKK----EMFGEAYNLVKELLDK 228

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                    +    + +  L+ GLC   K++ A +L+  +   G  P+V  +NILI GLC
Sbjct: 229 --------GLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+ RIL + 
Sbjct: 281 SVGKM------QLALSLYFDMNRWKYAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 390 FTPDAVTFTSLIKIL 404
             PD +++   +K L
Sbjct: 335 LEPDIISYNITLKGL 349



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 148/331 (44%), Gaps = 34/331 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K  + D  L + +     G   D + Y+ 
Sbjct: 76  DEVISIWELMKESGFVEDSIT-YGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+   + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A NL +E+ +         +P  ITYS ++ GLC + 
Sbjct: 195 CSPTIITYNTLINGLCKKEMFGEAYNLVKELLDKG------LDPGVITYSMLMKGLCLDH 248

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L       ++ +    F  P V++  +      LI GLC + K+++A  L+  + 
Sbjct: 249 KVERALQL-----WNQVTSKGFK-PDVQMHNI------LIHGLCSVGKMQLALSLYFDMN 296

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R    PN+V++N L+ G   DG +          +++ R+   GL PD+ +YNI +   C
Sbjct: 297 RWKYAPNLVSHNTLMEGFYKDGDI------RNALVIWARILRNGLEPDIISYNITLKGLC 350

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              R+S   +         F  DAVT  +++
Sbjct: 351 SCNRISDAIL---------FLHDAVTKKTVL 372



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 149/319 (46%), Gaps = 36/319 (11%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCF-ELWEMMGSEGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++  EMA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL-EMAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSA-------NFLGFSCMASFSALNKM-------AF 272
             GV+   DA  YS +I+GLCKEA            +   C  +    N +       + 
Sbjct: 125 --GVL---DAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASK 179

Query: 273 YFPLVRV-------QC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +   +RV        C    + +  LI+GLCK      A  L + L   GL P V+TY++
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKKEMFGEAYNLVKELLDKGLDPGVITYSM 239

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++GLC D ++      E    L+ ++ S G  PD+  +NILI+  C +G++     ++ 
Sbjct: 240 LMKGLCLDHKV------ERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYF 293

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +    + P+ V+  +L++
Sbjct: 294 DMNRWKYAPNLVSHNTLME 312


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 142/326 (43%), Gaps = 25/326 (7%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VFD ML  R  +P V +FN L   + K    +   +L   +   G+ PD YTY   I   
Sbjct: 264 VFDEMLR-RGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGL 322

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK GR+     +   +      P+ V  T+LI   C E  +     L  ++   G + D+
Sbjct: 323 CKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADL 382

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             YN L+NG CR      A ++ EEM           +PD +TY+T+IDG CKE      
Sbjct: 383 VAYNALVNGFCRVRDMKAANDIVEEMRKDG------LKPDKVTYTTLIDGCCKE------ 430

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                        +M        V    + +  LI GL K  +   A  +   +  AGL 
Sbjct: 431 ------GELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQ 484

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+  TY ++I   C +G +      +T F   K + + G  P + TYN+++N FC +G++
Sbjct: 485 PDNTTYTMVIDAFCKNGDV------KTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQM 538

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
            +  ++   +L     P+ +T+  L+
Sbjct: 539 KNADMLLNAMLNIGVCPNDITYNILL 564



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 134/283 (47%), Gaps = 24/283 (8%)

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
            G+ P+   +N+L+    + G+++    V   +LR    P  VTF +L+  +C  S +  
Sbjct: 236 AGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNN 295

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A AL   +   G   DV+TY   I GLC+TG    A+ +FEEM     E G+   P+ + 
Sbjct: 296 ANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMC----ERGL--NPNTVV 349

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
            +T+ID  CKE               +A  ++ +      V+   + +  L++G C++  
Sbjct: 350 LTTLIDAHCKE------------GDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRD 397

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           +K A ++ + + + GL P+ VTY  LI G C +G++D      T   + + ++  G+  D
Sbjct: 398 MKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELD------TAMEMKQEMSDEGVALD 451

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             TY  LI+   K GR      I   ++ +   PD  T+T +I
Sbjct: 452 DVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVI 494



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P  T++ ++     K     T     K +   G  P   TYN+++N FC +G++ +  +
Sbjct: 484 QPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADM 543

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
           +L  +L     P+ +T+  L+   C   ++ +   L +     G   D   Y +LIN
Sbjct: 544 LLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEELKS---AKGMVSDFGVYTSLIN 597



 Score = 41.6 bits (96), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           D + ++  +  A   +  L  AG+ P    +N+L+R +   G++   ++      +F  +
Sbjct: 215 DLMNRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARN------VFDEM 268

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              G+ P + T+N L++  CK   +++   + G +  +   PD  T+ + I+ L
Sbjct: 269 LRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGL 322


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 150/353 (42%), Gaps = 47/353 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +FN L     K       L + + +    + PD  TY IL+N  C++G+V   F +
Sbjct: 269 PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYL 328

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  I+R  + PD + +TSL+  LC    I EA  L  ++ V GC   V  Y++L++G CR
Sbjct: 329 LEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCR 388

Query: 208 TGHTIVALNLFEEMANGN------------------GEFGVVCE-----------PDAIT 238
            G+   A  +  EM + N                  G                  PD +T
Sbjct: 389 AGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVT 448

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+T+IDGLCK    AN +  +C  +    ++  F   +            ++ GLC++ +
Sbjct: 449 YNTLIDGLCK----ANRVREACDLADEMASRGCFPNDV--------TLGSVVFGLCRVGR 496

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           +  A  L   + R    PNVV Y  LI GLC   +MD+        ++   +   G+  D
Sbjct: 497 VDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDA------CMVLDAMRGQGVALD 550

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411
            + Y  LI      GRV+    ++  ++   F PD  T  +L +    NS F 
Sbjct: 551 DFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSVFE 603



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 164/364 (45%), Gaps = 42/364 (11%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           S  P+ A+  FD+       +  V S+N L   L K+ H+     ++K L  +G  P+  
Sbjct: 4   SSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLV 63

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           T+ ILI   CK G+       L  +      PD   F  LI  L  +    +A  LF  +
Sbjct: 64  TFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENM 123

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
                + ++ TYNT+I+GLC++G+   A  L EEM    G+      PD +TY+T+I+  
Sbjct: 124 ESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSA----PDIVTYNTLINAF 179

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            +    A+ +  +C  +F    K A   P V    L  N   L+ G+CK   ++ A E+ 
Sbjct: 180 YR----ASRIREAC--AFREKMKAAGINPDV----LTCNI--LVSGICKDGDVEEALEIL 227

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH-------------YETVFLLF------ 347
             +  AG +P+V+TYN +I  LC  G++ E                + T+   F      
Sbjct: 228 DGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGML 287

Query: 348 -------KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                  + +    + PD+ TY IL+N  C++G+V   F +   I+   + PD + +TSL
Sbjct: 288 PRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSL 347

Query: 401 IKIL 404
           +  L
Sbjct: 348 VDGL 351



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 6/168 (3%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +++R  R  V  ++ L     +  +      +   +    + P  +TYNI++    K G 
Sbjct: 367 MSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGS 426

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +S    ++  ++   + PD VT+ +LI  LC  +R+ EA  L  ++   GC  +  T  +
Sbjct: 427 ISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGS 486

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           ++ GLCR G    A +L  EM+           P+ + Y+++IDGLCK
Sbjct: 487 VVFGLCRVGRVDDAWSLVVEMSRKRH------APNVVVYTSLIDGLCK 528


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 155/336 (46%), Gaps = 28/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYN 129
           ++A  V   M + +   P + +++ +     K    D    + + +    G+ PD  TY 
Sbjct: 26  SKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYT 85

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +++  C+ G++     ++  +      PD  TF++LI   C   ++ EA  L+ ++   
Sbjct: 86  SVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTS 145

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYSTIIDGLCK 248
            C LD  + + LI GLCR      A  LF+EM    +G +    +PD +TY+ +IDG CK
Sbjct: 146 SCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAW----KPDVVTYTALIDGFCK 201

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELF 306
              S N               M     +   +C+   + +  L+ GLCK   L  A +LF
Sbjct: 202 ---SGNL-----------EKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLF 247

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           + +   G +PNVVTY  LI GLC   ++D  +      LL   + +T    D  +YN L+
Sbjct: 248 RRMTSKGCVPNVVTYTTLIHGLCAAHKVDAAR------LLMDEMTATCCPADTVSYNALL 301

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + +C++GR+     +F  +      PD +T+T L++
Sbjct: 302 DGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVR 337



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 152/338 (44%), Gaps = 69/338 (20%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVL--------------------------GRILRSC- 155
           P+  TYN+++N  CK    S  + VL                          G + R+C 
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 156 ----------FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
                       PD VT+TS++  LC + ++  A  +  ++++ G E D FT++ LI G 
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 126

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMAS 263
           C       AL L++E+   +      C  DA++ S +I GLC+E   G A  L F  M  
Sbjct: 127 CNARKVDEALKLYKEILTSS------CRLDAVSSSALITGLCRERRIGEAYEL-FQEM-- 177

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              + +   + P V      + +  LIDG CK   L+ A ++   +     +PNVVTY+ 
Sbjct: 178 --EMREDGAWKPDV------VTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSS 229

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L+ GLC  G +D+         LF+R+ S G  P++ TY  LI+  C   +V +  ++  
Sbjct: 230 LLHGLCKAGDLDQA------LDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMD 283

Query: 384 RILPSCFTPDAVTFTSLI-------KILEINSFFRQVA 414
            +  +C   D V++ +L+       +I E    F+++A
Sbjct: 284 EMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMA 321



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 140/323 (43%), Gaps = 27/323 (8%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++  R   P V +++ L   L K    D  L LF+R+   G  P+  TY  LI+  C   
Sbjct: 214 VMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAH 273

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           +V    +++  +  +C   D V++ +L+   C   RI EA  LF ++    C  D  TY 
Sbjct: 274 KVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYT 333

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            L+ G C       A  L E M    G      +PD +TYS ++             G+S
Sbjct: 334 CLVRGFCNASRLEEARFLLENMKTAAG-----IDPDVVTYSIVV------------AGYS 376

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
               F    +         V    + +  LIDGLCK  ++  A E+ +++ +    P+VV
Sbjct: 377 RAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDK----PDVV 432

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY I+I GLC       T   E    L + + +  + P + T+N +I   C++G +   +
Sbjct: 433 TYTIVIEGLCG------TDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAW 486

Query: 380 VIFGRILPSCFTPDAVTFTSLIK 402
            +   +      P  VT+T+L++
Sbjct: 487 KLLVAMAAHGLEPGMVTYTTLLE 509



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 143/313 (45%), Gaps = 30/313 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F  M + +   P V ++  L   L      D    L   +  T    D  +YN 
Sbjct: 241 DQALDLFRRMTS-KGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNA 299

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR-VF 189
           L++ +C++GR+     +   +      PD +T+T L++  C  SR+ EA  L   ++   
Sbjct: 300 LLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA 359

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G + DV TY+ ++ G  R    + A    +EM   N        P+A+TYS++IDGLCK 
Sbjct: 360 GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARN------VAPNAVTYSSLIDGLCK- 412

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
           AG  N      M     ++K     P V      + +  +I+GLC   + + A  L + +
Sbjct: 413 AGRVNH----AMEVLKNVDK-----PDV------VTYTIVIEGLCGTDRTEEALTLLEEM 457

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
               + P+V T+N +I  LC  G MDE       + L   + + GL P + TY  L+  F
Sbjct: 458 VNKRVEPSVGTFNSVIGALCRLGDMDEA------WKLLVAMAAHGLEPGMVTYTTLLEGF 511

Query: 370 CKIGRVSSGFVIF 382
            + GR+   + +F
Sbjct: 512 SRTGRMEIAYELF 524



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 109/251 (43%), Gaps = 17/251 (6%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++I+    ++ K +       + +    + P+  TY+ LI+  CK GRV+H    
Sbjct: 363 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAM-- 420

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L++   PD VT+T +I+ LC   R  EA  L  ++     E  V T+N++I  LCR
Sbjct: 421 --EVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCR 478

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFSA 266
            G    A  L   MA          EP  +TY+T+++G  +       +  F  M   + 
Sbjct: 479 LGDMDEAWKLLVAMAAHG------LEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKA- 531

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             K +    LV  Q     F  LI GLCK  ++  A  + + L      P       ++ 
Sbjct: 532 -KKSSSAANLVPEQA----FSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVD 586

Query: 327 GLCNDGQMDET 337
           GL   G+ +E 
Sbjct: 587 GLLRAGRTEEA 597



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 14/179 (7%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
            +P V ++ I+   L  T   +  L+L + +    + P   T+N +I   C++G +   +
Sbjct: 427 DKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAW 486

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE-------LDVFTY 198
            +L  +      P  VT+T+L++      R+  A  LF  +R    +       +    +
Sbjct: 487 KLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAF 546

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
           + LI GLC+      A+ + EE+ +        CEP       I+DGL + AG     G
Sbjct: 547 SALIRGLCKAREIDKAMAVVEELRSRE------CEPAEEDCLAIVDGLLR-AGRTEEAG 598



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R  + PN  TYN+++ GLC       +K YE   +L +  +   + PDL TY+ +IN FC
Sbjct: 2   REFVAPNERTYNVVVNGLCKARLT--SKAYE---VLKEMRDGKSVAPDLVTYSTVINGFC 56

Query: 371 KIGRVSSGFVIFGRILP-SCFTPDAVTFTSLIKIL 404
           K G +     I   ++      PD VT+TS++  L
Sbjct: 57  KQGEMDRACEILREMVTRDGMAPDVVTYTSVVDGL 91


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 162/355 (45%), Gaps = 37/355 (10%)

Query: 47  ASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY 106
           A +  F KE C+             EA  +FD ML      P + +FN L   L K  + 
Sbjct: 186 AVISGFYKENCQI------------EAYHLFDEMLKQGIC-PDILTFNKLIHVLCKKGNV 232

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
                LF ++   G+ P+ +T+NI I   C+ G +     +L  I+    TPD +++ +L
Sbjct: 233 QESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTL 292

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           I   C  S+++EA     K+   G E + FTYNT+ING C+ G    A  +  +      
Sbjct: 293 ICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFK-- 350

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
             G +  PD  TYS++I+GLC + G  N      MA F    +  F   ++        +
Sbjct: 351 --GFI--PDEFTYSSLINGLCND-GDMN----RAMAVFYEAMEKGFKHSIIL-------Y 394

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             L+ GL K   +  A +L + +   G  P++ TYN+++ GLC  G + +         +
Sbjct: 395 NTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANG------I 448

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                + G  PD++T+N LI+ +CK   +     I   +L    TPD +T+ +L+
Sbjct: 449 LNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLL 503



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 163/395 (41%), Gaps = 83/395 (21%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ VF+ M +     P V S+N +   L +  ++     ++ R+   G++PD YT+ I
Sbjct: 93  QEAVNVFERM-DFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTI 151

Query: 131 LINCFCKMGR--------------------VSHGFVVLG---------------RILRSC 155
            +  FC  GR                    VS+  V+ G                +L+  
Sbjct: 152 RMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG 211

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             PD +TF  LI  LC +  + E+  LF+K+   G   ++FT+N  I GLCR G    A 
Sbjct: 212 ICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAA 271

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            L E + +          PD I+Y+T+I G CK +       +      S +    F + 
Sbjct: 272 RLLESIVSEG------LTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYN 325

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
            +            I+G CK   ++ A ++ +     G +P+  TY+ LI GLCNDG M+
Sbjct: 326 TI------------INGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMN 373

Query: 336 ET------------KH----YETV-------------FLLFKRLNSTGLFPDLYTYNILI 366
                         KH    Y T+               L K +   G  PD++TYN+++
Sbjct: 374 RAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVV 433

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N  CK+G +S    I    +     PD  TF +LI
Sbjct: 434 NGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLI 468



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 142/334 (42%), Gaps = 65/334 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A+ VF Y    +  +  +  +N L   L+K       L L K +   G  PD +TYN+
Sbjct: 373 NRAMAVF-YEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNL 431

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++N  CKMG +S    +L   +     PD  TF +LI   C +  + +A  +   +   G
Sbjct: 432 VVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV TYNTL+NGLC+       ++ F+ M          C P+ ITY+ +I+  CK+ 
Sbjct: 492 ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKG------CTPNIITYNILIESFCKD- 544

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                                          K+  A ELF+ + 
Sbjct: 545 ----------------------------------------------RKVSEAMELFKEMK 558

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYE---TVFLLFKRLNSTGLFPDLYTYNILIN 367
             GL P++VT   LI GLC++G++D  K YE   T+   +K   ST +F      NI+IN
Sbjct: 559 TRGLTPDIVTLCTLICGLCSNGELD--KAYELFVTIEKEYKFSYSTAIF------NIMIN 610

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            FC    VS    +F ++  S   PD  T+  +I
Sbjct: 611 AFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMI 644



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 121/310 (39%), Gaps = 60/310 (19%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +FN L     K ++ D  + +   +   G+ PD  TYN L+N  CK  ++ +    
Sbjct: 459 PDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDT 518

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L    TP+ +T+  LI+  C + ++ EA  LF +++  G   D+ T  TLI GLC 
Sbjct: 519 FKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCS 578

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPD-AITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            G    A  LF           V  E +   +YST                         
Sbjct: 579 NGELDKAYELF-----------VTIEKEYKFSYST------------------------- 602

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
               A +  ++   C  LN             + +A +LF  +  +   P+  TY ++I 
Sbjct: 603 ----AIFNIMINAFCXKLN-------------VSMAEKLFHKMGGSDCAPDNYTYRVMID 645

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             C  G +D        FLL     S GL P   T   ++NC C   R+S   VI   ++
Sbjct: 646 SYCKTGNID----LAHTFLLENI--SKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMV 699

Query: 387 PSCFTPDAVT 396
            +   P+ V 
Sbjct: 700 QNGIVPEEVN 709



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 117/278 (42%), Gaps = 65/278 (23%)

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL---------------- 205
            +  +++D   + ++ EA  +F ++  + CE  V +YN ++N L                
Sbjct: 78  VYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRM 137

Query: 206 -------------------CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
                              C TG    AL L   M  G G     CE +A++Y  +I G 
Sbjct: 138 KDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMP-GQG-----CEFNAVSYCAVISGF 191

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC---LNFLCLIDGLCKISKLKIAR 303
            KE         +C      L      F  +  Q +C   L F  LI  LCK   ++ + 
Sbjct: 192 YKE---------NCQIEAYHL------FDEMLKQGICPDILTFNKLIHVLCKKGNVQESE 236

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           +LF  + + G+ PN+ T+NI I+GLC  G +DE         L + + S GL PD+ +YN
Sbjct: 237 KLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAAR------LLESIVSEGLTPDVISYN 290

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            LI  FCK  ++        +++ S   P+  T+ ++I
Sbjct: 291 TLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTII 328


>gi|255661034|gb|ACU25686.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 376

 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 158/317 (49%), Gaps = 28/317 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V SFNI+   L      D  +S+++ +  +G   D  T+ ILI+ FCK G ++    VL 
Sbjct: 59  VISFNIMMRGLFNNGEVDKAISIWELMKKSGFVEDSTTHAILIDGFCKNGYINKSLRVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
                    +A  ++++I  LC E+++ +AA++   +   G + +   YN LING     
Sbjct: 119 IAEEKGGVLNAFAYSAMINGLCREAKLDKAASVLNGMIKNGSKPNAHVYNILINGFVGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F+EM + +      C P  +TY+T+I+GLCK        G     ++  + +
Sbjct: 179 KFYDAIRVFQEMGSTD------CSPTIVTYNTLINGLCK--------GERFAEAYDLVKE 224

Query: 270 M--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           M    + P V      + +  LI GLC+  K+++A +L+  +   GL P+V  +NILI G
Sbjct: 225 MLEKGWKPCV------ITYSLLIKGLCQGHKVEMAIQLWNQVISKGLKPDVQMHNILIHG 278

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC+ G+       +   +L+  +N     P+L T+N L+  F K G + +  VI+ RIL 
Sbjct: 279 LCSVGKT------QLALMLYFDMNRWNCAPNLVTHNTLMEGFYKDGDIRNALVIWARILR 332

Query: 388 SCFTPDAVTFTSLIKIL 404
           +   PD V++   +K L
Sbjct: 333 NGLQPDIVSYNITLKGL 349



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 154/325 (47%), Gaps = 40/325 (12%)

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
           ++  D    ++K +  + + PD   YN ++N + ++GR+   F  L  ++ +    + ++
Sbjct: 3   SEDIDGAERVYKEMVESKMSPDAVVYNAMLNGYFRVGRIKDCFE-LWELMGTEGGQNVIS 61

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
           F  +++ L     + +A +++  ++  G   D  T+  LI+G C+ G+   +L +  E+A
Sbjct: 62  FNIMMRGLFNNGEVDKAISIWELMKKSGFVEDSTTHAILIDGFCKNGYINKSLRVL-EIA 120

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEA---------------GSA------NFL--GFS 259
              G  GV+   +A  YS +I+GLC+EA               GS       N L  GF 
Sbjct: 121 EEKG--GVL---NAFAYSAMINGLCREAKLDKAASVLNGMIKNGSKPNAHVYNILINGFV 175

Query: 260 CMASFSALNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
             + F   + +  +  +    C    + +  LI+GLCK  +   A +L + +   G  P 
Sbjct: 176 GASKF--YDAIRVFQEMGSTDCSPTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWKPC 233

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           V+TY++LI+GLC      +    E    L+ ++ S GL PD+  +NILI+  C +G+   
Sbjct: 234 VITYSLLIKGLC------QGHKVEMAIQLWNQVISKGLKPDVQMHNILIHGLCSVGKTQL 287

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIK 402
             +++  +      P+ VT  +L++
Sbjct: 288 ALMLYFDMNRWNCAPNLVTHNTLME 312



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 117/260 (45%), Gaps = 56/260 (21%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILF-GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           ++A  V + M+    S+P    +NIL  G +  +K YD +  +F+ +  T   P   TYN
Sbjct: 146 DKAASVLNGMIK-NGSKPNAHVYNILINGFVGASKFYDAI-RVFQEMGSTDCSPTIVTYN 203

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LIN  CK  R +  + ++  +L   + P  +T++ LIK LC   ++  A  L+ ++   
Sbjct: 204 TLINGLCKGERFAEAYDLVKEMLEKGWKPCVITYSLLIKGLCQGHKVEMAIQLWNQVISK 263

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G + DV  +N LI+GLC  G T +AL L+ +M   N      C P+ +T++T+++G  K+
Sbjct: 264 GLKPDVQMHNILIHGLCSVGKTQLALMLYFDMNRWN------CAPNLVTHNTLMEGFYKD 317

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
               N L                                                ++  +
Sbjct: 318 GDIRNAL-----------------------------------------------VIWARI 330

Query: 310 PRAGLMPNVVTYNILIRGLC 329
            R GL P++V+YNI ++GLC
Sbjct: 331 LRNGLQPDIVSYNITLKGLC 350


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 147/317 (46%), Gaps = 27/317 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V  ++ L     K   ++ V  +F+ ++  G+ PD   Y  LI+  C+ G+V     
Sbjct: 180 EPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQ 239

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V+ +++     P+ VT+  LI  +C E  + EA +L   +   G  LD  TYNTLI GL 
Sbjct: 240 VMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLS 299

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A+ L EEM +G      + EP+ +T++++I GLCK              +F  
Sbjct: 300 GVLEMDEAMGLLEEMIHGE----TMVEPNVVTFNSVIHGLCKTG--------RMRQAFQV 347

Query: 267 LNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            + MA         C C  + F  LI GL ++ K+K A EL   +  +GL P+  TY+IL
Sbjct: 348 RDMMA------ENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSIL 401

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I G C   Q+D  +       L  ++   G+ P+L  Y  L+   C+ G +      F  
Sbjct: 402 INGFCKMWQVDRAES------LLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDE 455

Query: 385 ILPSCFTPDAVTFTSLI 401
           +  +C   D V ++++I
Sbjct: 456 MHKNC-KLDVVAYSTMI 471



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 146/326 (44%), Gaps = 22/326 (6%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V ++  L   L      D  + L + +  +G+ P+   Y+ L+  +CK GR      
Sbjct: 145 RPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSK 204

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   +      PD V +T LI  LC E ++ +A  +  K+   G E +V TYN LIN +C
Sbjct: 205 VFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMC 264

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A++L   M     E GV    DA+TY+T+I GL         +G         
Sbjct: 265 KEGSVKEAMSLRNNML----EKGVAL--DAVTYNTLITGLSGVLEMDEAMGL-------- 310

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L +M     +V    +  N   +I GLCK  +++ A ++   +   G   N+VT+N+LI 
Sbjct: 311 LEEMIHGETMVEPNVVTFN--SVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIG 368

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL            +    L   + S+GL PD +TY+ILIN FCK+ +V     +  ++ 
Sbjct: 369 GLLR------VHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMR 422

Query: 387 PSCFTPDAVTFTSLIKILEINSFFRQ 412
                P+ V +  L+  L       Q
Sbjct: 423 RDGIEPELVHYIPLLAALCEQGMMEQ 448



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 133/292 (45%), Gaps = 28/292 (9%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D  +YN ++   C+ G      + L R++     P AV++T+L++ LCAE R  +A  L 
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
             ++  G   DV TY TLI GLC       A+ L  EM     E G+  EP+ + YS ++
Sbjct: 137 RDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMC----ESGI--EPNVVVYSCLL 190

Query: 244 DGLCKEAGSANFLGFSCMAS-FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
            G CK AG      + C++  F  ++       +V        +  LID LC+  K+K A
Sbjct: 191 QGYCK-AGR-----WECVSKVFEEMSGRGIEPDVVM-------YTGLIDSLCREGKVKKA 237

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            ++   +   GL PNVVTYN+LI  +C +G + E        L        G+  D  TY
Sbjct: 238 TQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNML------EKGVALDAVTY 291

Query: 363 NILINCFCKIGRVSSGFVIFGRIL--PSCFTPDAVTFTSLIKILEINSFFRQ 412
           N LI     +  +     +   ++   +   P+ VTF S+I  L      RQ
Sbjct: 292 NTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQ 343



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 48/112 (42%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +++ +     + +   +     K +   GL PD  TY++LIN F   G +     VL 
Sbjct: 464 VVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLK 523

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
           ++  S F PD   F SLIK   A+    +   L  ++      LD    +T+
Sbjct: 524 QMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKIISTI 575


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 145/305 (47%), Gaps = 30/305 (9%)

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K    D    L   +   G+  D   ++ LI   C+ GR+         +   C +P+ +
Sbjct: 123 KAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEEC-SPNVI 181

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLR-----VFGCELDVFTYNTLINGLCRTGHTIVALN 216
           T+ +++  LC  +RI EA  LF  +        GCE DV +Y+T+I+ LC+      A  
Sbjct: 182 TYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYE 241

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
            F+ M        V C P+ +TYS++IDGLCK    +      C+     + +  F   +
Sbjct: 242 YFKRMR------AVGCAPNVVTYSSLIDGLCKVDRPSE-----CLELLLHMKEKGFGINI 290

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
           +       +F  ++  L K  + + A + F+ L ++G  PNVVTYN+ + GLC  G++DE
Sbjct: 291 I-------DFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDE 343

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                  + +   +  + + PD+ TY+ +I+ FCK GR+     +F R++     P  VT
Sbjct: 344 A------YRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVT 397

Query: 397 FTSLI 401
           F +L+
Sbjct: 398 FMTLL 402



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 151/332 (45%), Gaps = 44/332 (13%)

Query: 100 LAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           L + +  D   + F+   N  G   + YT  +L+N F K  R      +L   L     P
Sbjct: 50  LQQVEDPDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFP 109

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           + + +T++I   C   ++ +A  L  +++  G ++DV  ++TLI GLCR G    AL  F
Sbjct: 110 NEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQF 169

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
           + M       G  C P+ ITY+T+++GLCK    AN +    +  F  + K   Y     
Sbjct: 170 KSM-------GEECSPNVITYNTVVNGLCK----ANRID-EALELFDDMEKR--YEASHG 215

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE-- 336
            +   +++  +ID LCK  ++  A E F+ +   G  PNVVTY+ LI GLC   +  E  
Sbjct: 216 CEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECL 275

Query: 337 ---------------------------TKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
                                          E     F+RL  +G  P++ TYN+ ++  
Sbjct: 276 ELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGL 335

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK GRV   + I   ++ S  TPD +T++S+I
Sbjct: 336 CKAGRVDEAYRILLEMVESKVTPDVITYSSII 367



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 146/340 (42%), Gaps = 32/340 (9%)

Query: 71  NEALCVFDYMLNMRPS----RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           +EAL +FD M     +     P V S++ +   L K +  D     FKR+   G  P+  
Sbjct: 197 DEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVV 256

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           TY+ LI+  CK+ R S    +L  +    F  + + F +++  L       +A   F +L
Sbjct: 257 TYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERL 316

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G + +V TYN  ++GLC+ G    A  +  EM            PD ITYS+IIDG 
Sbjct: 317 LKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESK------VTPDVITYSSIIDGF 370

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARE 304
           CK AG  +        +     +M  +      +C+   + F+ L+ G  +  K + A  
Sbjct: 371 CK-AGRMD-------KADDVFTRMMVH------ECIPHPVTFMTLLHGFSEHKKSREAFR 416

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           + + +  AG +P + TYN+L+  +C           E+   ++ ++      PD  TY  
Sbjct: 417 VHEDMVNAGFIPGLQTYNVLMDCVCG------ADSVESALEIYHKMKRKKRQPDCNTYAP 470

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           LI C C+  RV         +      P+     +L+++L
Sbjct: 471 LIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVL 510



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 144/346 (41%), Gaps = 54/346 (15%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           +  FN +   L K    +     F+RL  +G  P+  TYN+ ++  CK GRV   + +L 
Sbjct: 290 IIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILL 349

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++ S  TPD +T++S+I   C   R+ +A  +FT++ V  C     T+ TL++G     
Sbjct: 350 EMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHK 409

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
            +  A  + E+M N     G +  P   TY+ ++D +C               + S  + 
Sbjct: 410 KSREAFRVHEDMVNA----GFI--PGLQTYNVLMDCVC--------------GADSVESA 449

Query: 270 MAFYFPLVRV--QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +  Y  + R   Q  C  +  LI  LC+  ++  A+E    +    ++PN    + L+  
Sbjct: 450 LEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEV 509

Query: 328 LCNDGQMDET-----------------------------KHYETVFLLFKRLNSTGLFPD 358
           LC  G++DE                              K +E      K L S G   D
Sbjct: 510 LCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAA---SKLLRSPGFVAD 566

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             TY++ +   CK G+      +  +++     PD  T+ ++++ L
Sbjct: 567 AATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSL 612



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 4/151 (2%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  V D ++ +   +P   +F IL   L   K ++    L +     G   D  TY++
Sbjct: 517 DEACSVLDNVVEV-GCQPLGETFKILVEELYLRKKWEAASKLLRS---PGFVADAATYSL 572

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            +   CK G+      V+ +++     PD  T+ ++++ LC   R+  A A F K+   G
Sbjct: 573 CVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRG 632

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           C   + TY  LI   C       A  +FE M
Sbjct: 633 CAPGLVTYTLLIGEACSADMADEAFRIFEAM 663



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 17/146 (11%)

Query: 43  VKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAK 102
           V D A+    + E CK+          P+EA+ V + M+ ++  RP   ++  +   L  
Sbjct: 564 VADAATYSLCVAEICKAG--------KPDEAVEVIEQMV-LKGVRPDEGTYVAVLRSLCG 614

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
               ++ ++ F+++   G  P   TY +LI   C        F +   ++ + FTP A T
Sbjct: 615 LDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQT 674

Query: 163 FTSL--------IKDLCAESRIMEAA 180
             +L         +DL    RIM  A
Sbjct: 675 MRTLSSCLRDAGYQDLLVRQRIMTMA 700



 Score = 42.0 bits (97), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 27/121 (22%), Positives = 50/121 (41%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
             ++++    + K    D  + + +++ L G+ PD  TY  ++   C + RV        
Sbjct: 567 AATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFE 626

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           ++      P  VT+T LI + C+     EA  +F  +   G      T  TL + L   G
Sbjct: 627 KMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAG 686

Query: 210 H 210
           +
Sbjct: 687 Y 687


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 151/322 (46%), Gaps = 23/322 (7%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P  P + +F ++   L + K  D   S+ +R    G  PD  TYN+ I+  CK  RV   
Sbjct: 2   PCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDA 61

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           F +L ++      P  VT+T+L+  L    R+ EA A+  ++   G    + TY  +I+G
Sbjct: 62  FQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDG 121

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           L + G    A  +F +M  GNG     C PDA  Y+ +I GLCK         ++     
Sbjct: 122 LSKAGRVEEARRIFVDML-GNG-----CRPDAFVYTALIKGLCKSGKPEE--AYALYKEA 173

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF--QSLPRAGLMPNVVTYN 322
           +A    A   P V      + +  LIDGLCK  ++  AR++F  +++ R G +P+ VTY 
Sbjct: 174 NARKHHATAVPDV------VTYTSLIDGLCKAGRILEARQVFDDEAVER-GFIPDAVTYT 226

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            +I GLC  G+++E          F  + + G  PD  TY  LI+ F K   +     ++
Sbjct: 227 SIIDGLCKLGRVEEGCER------FHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVY 280

Query: 383 GRILPSCFTPDAVTFTSLIKIL 404
            ++L S      VT+  ++  L
Sbjct: 281 RQMLQSGTVVSTVTYNIILDGL 302



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 152/337 (45%), Gaps = 32/337 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  VFD     R   P   ++  +   L K    +     F  +   G  PD  TY  L
Sbjct: 204 EARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAAL 263

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ F K   +     V  ++L+S      VT+  ++  LC   R+ EA A F  +   GC
Sbjct: 264 IDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGC 323

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              V TY+ L++G C  G+   A+ LF  M +        CEP+ ++Y+ II GLC+ AG
Sbjct: 324 VATVVTYSALMDGFCSEGNVSAAVELFRRMLDRG------CEPNLVSYNIIIRGLCR-AG 376

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLC-KISKLKIARELFQ 307
                          L K  FYF  +  + LC +   F   + GLC ++  +    ELF+
Sbjct: 377 K--------------LAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFE 422

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           S+   G  PN+ +Y+IL+ G+C  G +      E    +F+ + S G+ PD+  +N LI 
Sbjct: 423 SMVSQGTSPNLHSYSILMDGICRAGGL------EVALEIFREMVSRGVAPDVVVFNTLIR 476

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             C  GRV     +F R L     PDA ++ SL+  L
Sbjct: 477 WLCIAGRVDEALEVF-RELERRSAPDAWSYWSLLDGL 512



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 163/374 (43%), Gaps = 63/374 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N+    L K +  D    L K+++     P   TY  L++   K GR+     V
Sbjct: 40  PDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAV 99

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L +++    +P   T+T +I  L    R+ EA  +F  +   GC  D F Y  LI GLC+
Sbjct: 100 LEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCK 159

Query: 208 TGHTIVALNLFEE-------------------MANGNGEFGVVCE--------------- 233
           +G    A  L++E                   + +G  + G + E               
Sbjct: 160 SGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFI 219

Query: 234 PDAITYSTIIDGLCK----EAGSANF-----LGFSCMA-SFSAL------NKMAFYFPLV 277
           PDA+TY++IIDGLCK    E G   F      G+   A +++AL       KM      V
Sbjct: 220 PDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRV 279

Query: 278 RVQCL-------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
             Q L        + +  ++DGLCK  ++  A   F ++   G +  VVTY+ L+ G C+
Sbjct: 280 YRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCS 339

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
           +G +           LF+R+   G  P+L +YNI+I   C+ G+++  +  F ++L    
Sbjct: 340 EGNVS------AAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRL 393

Query: 391 TPDAVTFTSLIKIL 404
            PD  TF + +  L
Sbjct: 394 CPDVYTFNAFLHGL 407



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 16/200 (8%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EG++++     A+ +F  ML+ R   P + S+NI+   L +          F++L    L
Sbjct: 340 EGNVSA-----AVELFRRMLD-RGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRL 393

Query: 122 FPDRYTYNILINCFC-KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180
            PD YT+N  ++  C ++  VS G  +   ++    +P+  +++ L+  +C    +  A 
Sbjct: 394 CPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVAL 453

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
            +F ++   G   DV  +NTLI  LC  G    AL +F E+   +        PDA +Y 
Sbjct: 454 EIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSA-------PDAWSYW 506

Query: 241 TIIDGL--CKEAGSANFLGF 258
           +++DGL  C+    A  L F
Sbjct: 507 SLLDGLSRCERMEEARLLSF 526



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++ + +F+ M++   S P + S++IL   + +    +  L +F+ +   G+ PD   +
Sbjct: 413 TVSDGVELFESMVSQGTS-PNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVF 471

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N LI   C  GRV     V   + R    PDA ++ SL+  L    R+ EA  L   +++
Sbjct: 472 NTLIRWLCIAGRVDEALEVFRELERRS-APDAWSYWSLLDGLSRCERMEEARLLSFHMKL 530

Query: 189 FGC 191
            GC
Sbjct: 531 QGC 533


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 172/405 (42%), Gaps = 78/405 (19%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGC--LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           +FD ML    S   VT   ++ G   L + K  +TVL+        G+ PD  TY  LI+
Sbjct: 125 LFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAE---HGIHPDVVTYTGLID 181

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK GR +H   +L  ++     P  VT+  L+  LC E  +++A  +   +   G + 
Sbjct: 182 GLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKA 241

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--- 250
           DV TYNTL+ GLC  G    AL LF  M +         EP+  T++ +I GLCKE    
Sbjct: 242 DVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN----CLEPNVFTFNMLIGGLCKEGRLT 297

Query: 251 ------------GSA------NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL----- 287
                       GS       N L   C+ +      M  +      Q L L F+     
Sbjct: 298 KAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELW-----KQVLDLGFVPNSFT 352

Query: 288 --CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK------- 338
              LIDG CK+  L IA+ LF  +   GL P +  YN L+  LC +G +++ K       
Sbjct: 353 YSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMG 412

Query: 339 ----------------------HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
                                  ++ V  L  ++   GL PD  T++ LIN   K+G + 
Sbjct: 413 NANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELD 472

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKIL-------EINSFFRQVA 414
                  R++ S FTPDA+ + SL+K L       EI +   Q+A
Sbjct: 473 EAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMA 517



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 163/351 (46%), Gaps = 36/351 (10%)

Query: 76  VFDYM-----LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           VF+ M     +  +   P + S+N L   L K K     + L   +   G FP+  T   
Sbjct: 14  VFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTT 73

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK GR+     +L  + +  F  D V + +LI   C    +     LF ++   G
Sbjct: 74  LMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKG 133

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +V TY+ L++GLCR G    A  +   MA    E G+   PD +TY+ +IDGLCK+ 
Sbjct: 134 ISANVVTYSCLVHGLCRLGQWKEANTVLNAMA----EHGI--HPDVVTYTGLIDGLCKDG 187

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            + +        +   LN M         +   + +  L+ GLCK   +  A ++ + + 
Sbjct: 188 RATH--------AMDLLNLMVEKGE----EPSNVTYNVLLSGLCKEGLVIDAFKILRMMI 235

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDET-KHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             G   +VVTYN L++GLC+ G++DE  K + ++F      N   L P+++T+N+LI   
Sbjct: 236 EKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMF-----DNENCLEPNVFTFNMLIGGL 290

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           CK GR++    I  +++      + VT+  L+       KI E    ++QV
Sbjct: 291 CKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQV 341



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 144/311 (46%), Gaps = 26/311 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
            NI+   L +       + L + +    + PD  +YN LIN  CK  ++     +L  + 
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            +   P++VT T+L+  LC + R+ EA  L   ++  G + DV  Y TLI+G C  G+  
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD 120

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
               LF+EM       G     + +TYS ++ GLC+       LG    A+ + LN MA 
Sbjct: 121 RGKELFDEM------LGKGISANVVTYSCLVHGLCR-------LGQWKEAN-TVLNAMAE 166

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
           +     +    + +  LIDGLCK  +   A +L   +   G  P+ VTYN+L+ GLC +G
Sbjct: 167 H----GIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEG 222

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL--PSCF 390
            + +       F + + +   G   D+ TYN L+   C  G+V     +F  +    +C 
Sbjct: 223 LVID------AFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCL 276

Query: 391 TPDAVTFTSLI 401
            P+  TF  LI
Sbjct: 277 EPNVFTFNMLI 287



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 140/301 (46%), Gaps = 25/301 (8%)

Query: 71  NEALCVFDYML-NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +EAL +F+ M  N     P V +FN+L G L K       + + +++   G   +  TYN
Sbjct: 260 DEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYN 319

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +L+    K G++     +  ++L   F P++ T++ LI   C    +  A  LF ++R  
Sbjct: 320 MLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTH 379

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G    +F YNTL+  LC+ G    A +LF+EM N N      CEPD I+++T+IDG  K 
Sbjct: 380 GLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNAN------CEPDIISFNTMIDGTLKA 433

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                         F  + ++      + ++   L F  LI+ L K+ +L  A+   + +
Sbjct: 434 ------------GDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERM 481

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             +G  P+ + Y+ L++GL + G   E      +  L  ++ + G   D    + ++ C 
Sbjct: 482 VASGFTPDALVYDSLLKGLSSKGDTTE------IINLLHQMAAKGTVLDRKIVSTILTCL 535

Query: 370 C 370
           C
Sbjct: 536 C 536



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 144/342 (42%), Gaps = 37/342 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +   L   L K    D  + L + +   G   D   Y  LI+ FC  G +  G  +
Sbjct: 66  PNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKEL 125

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L    + + VT++ L+  LC   +  EA  +   +   G   DV TY  LI+GLC+
Sbjct: 126 FDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCK 185

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN-FLGFSCMASFSA 266
            G    A++L   M    GE     EP  +TY+ ++ GLCKE    + F     M     
Sbjct: 186 DGRATHAMDLLNLMVE-KGE-----EPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGK 239

Query: 267 LNKMAFYFPLVRVQCL-------------------CLN-----FLCLIDGLCKISKLKIA 302
              +  Y  L++  C                    CL      F  LI GLCK  +L  A
Sbjct: 240 KADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKA 299

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            ++ + + + G   N+VTYN+L+ G    G++ E         L+K++   G  P+ +TY
Sbjct: 300 VKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAME------LWKQVLDLGFVPNSFTY 353

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +ILI+ FCK+  ++    +F  +      P    + +L+  L
Sbjct: 354 SILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASL 395



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 4/148 (2%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +F  M N     P + SFN +     K   +  V  L  ++   GL PD  T++ L
Sbjct: 403 QAKSLFQEMGNAN-CEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTL 461

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN   K+G +      L R++ S FTPDA+ + SL+K L ++    E   L  ++   G 
Sbjct: 462 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGT 521

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFE 219
            LD    +T++  LC   H+I  +++ E
Sbjct: 522 VLDRKIVSTILTCLC---HSIQEVDVME 546


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 150/348 (43%), Gaps = 55/348 (15%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+  +            V+ L K + L GL P+ YTY+ +I   CK G+V  G  V
Sbjct: 143 PDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKV 202

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +++    PD V +T+LI   C       A  LF+++       D   ++ LI GL  
Sbjct: 203 LREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSG 262

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +G  + A  LF EM           EPD +TY+ +IDG CK       LG          
Sbjct: 263 SGKVVEADKLFNEMIKKG------FEPDEVTYTALIDGYCK-------LGEM-------- 301

Query: 268 NKMAFYFPLVRVQCL----CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            K AF+     VQ       + +  L DGLCK  +L  A EL   + R GL  N+ TYN 
Sbjct: 302 -KKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNT 360

Query: 324 LIRGLCNDGQ-------MDETK----HYETVFL------------------LFKRLNSTG 354
           ++ GLC  G        M+E K    H +T+                    L + +   G
Sbjct: 361 IVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRG 420

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           L P + T+N+L+N  C  G++  G  +   +L     P+A T+ S++K
Sbjct: 421 LQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMK 468



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 161/341 (47%), Gaps = 33/341 (9%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P   +F+ L   L+ +        LF  +   G  PD  TY  LI+ +CK+G 
Sbjct: 241 MEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGE 300

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +   F +  ++++   TP+ VT+T+L   LC    +  A  L  ++   G +L++ TYNT
Sbjct: 301 MKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNT 360

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           ++NGLC+ G+ + A+ L EEM     E G+   PD ITY+T++D   K            
Sbjct: 361 IVNGLCKAGNILQAVKLMEEMK----EAGL--HPDTITYTTLMDAYYKTG--------EM 406

Query: 261 MASFSALNKMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
           + +   L +M     L R +Q   + F  L++GLC   KL+    L + +   G+MPN  
Sbjct: 407 VKARELLREM-----LDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAA 461

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TYN +++  C    M  +        +++ + + G+ PD  TYNILI   CK   +   +
Sbjct: 462 TYNSIMKQYCIRNNMRISTE------IYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAW 515

Query: 380 VIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
            +   ++   F   A ++ +LI       K+LE    F ++
Sbjct: 516 FLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEM 556



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 24/310 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S+NIL   L +         L  R+   G  PD  +Y  +I+ +C +G +     ++  +
Sbjct: 112 SYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEM 171

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 P+  T++S+I  LC   +++E   +  ++   G   D   Y TLI+G C+ G+T
Sbjct: 172 QLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNT 231

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A  LF EM        +V  PD+I +S +I GL   +GS   +    +  F+ + K  
Sbjct: 232 QAAYKLFSEMEARE----IV--PDSIAFSALICGL---SGSGKVVEADKL--FNEMIKKG 280

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F    V        +  LIDG CK+ ++K A  L   + + GL PNVVTY  L  GLC  
Sbjct: 281 FEPDEV-------TYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKS 333

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G++D      T   L   +   GL  ++ TYN ++N  CK G +     +   +  +   
Sbjct: 334 GELD------TANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLH 387

Query: 392 PDAVTFTSLI 401
           PD +T+T+L+
Sbjct: 388 PDTITYTTLM 397



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 119/283 (42%), Gaps = 31/283 (10%)

Query: 57  CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
           CKS GE D  +   +E +C     LN       ++++N +   L K  +    + L + +
Sbjct: 331 CKS-GELDTANELLHE-MCRKGLQLN-------ISTYNTIVNGLCKAGNILQAVKLMEEM 381

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
              GL PD  TY  L++ + K G +     +L  +L     P  VTF  L+  LC   ++
Sbjct: 382 KEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKL 441

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
            +   L   +   G   +  TYN+++   C   +  ++  ++  M       GVV  PD+
Sbjct: 442 EDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQ----GVV--PDS 495

Query: 237 ITYSTIIDGLCK--EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
            TY+ +I G CK      A FL    +                R      ++  LI G  
Sbjct: 496 NTYNILIKGHCKARNMKEAWFLHKEMVEK--------------RFNLTASSYNALIKGFF 541

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           K  KL  AR+LF+ + R GL+ +   YN+ +     +G M+ T
Sbjct: 542 KRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETT 584



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 50/110 (45%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
            +++ +   G+ PD  TYNILI   CK   +   + +   ++   F   A ++ +LIK  
Sbjct: 481 EIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGF 540

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220
               +++EA  LF ++R  G       YN  ++     G+    L L +E
Sbjct: 541 FKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDE 590


>gi|255660958|gb|ACU25648.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 348

 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 151/313 (48%), Gaps = 24/313 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +     DA  ++++I  LC E+ +  A  +   +   GC+ +V  YNTLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        + C P  ITY+T+I+GLCK        G +       L+K
Sbjct: 179 KFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKN----EMFGEAYNLVKELLDK 228

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                    +    + +  L+ GLC   K++ A +L+  +   G  P+V  +NILI GLC
Sbjct: 229 --------GLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+ RIL + 
Sbjct: 281 SVGKM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 390 FTPDAVTFTSLIK 402
             PD +++   +K
Sbjct: 335 LEPDIISYNITLK 347



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 148/319 (46%), Gaps = 36/319 (11%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCF-ELWEMMGSEGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++  EMA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL-EMAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSA-------NFLGFSCMASFSALNKM-------AF 272
             GV+   DA  YS +I+GLCKEA            +   C  +    N +       + 
Sbjct: 125 --GVL---DAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASK 179

Query: 273 YFPLVRV-------QC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +   +RV        C    + +  LI+GLCK      A  L + L   GL P V+TY++
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSM 239

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++GLC D ++      E    L+ ++ S G  PD+  +NILI+  C +G++     ++ 
Sbjct: 240 LMKGLCLDHKV------ERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYF 293

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +      P+ V+  +L++
Sbjct: 294 DMNRWKCAPNLVSHNTLME 312



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 7/186 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + AL V + M+     +P V  +N L   L     ++  + +F+ +      P   TYN 
Sbjct: 146 DRALYVLNGMIK-SGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNT 204

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK       + ++  +L     P  +T++ L+K LC + ++  A  L+ ++   G
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKG 264

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV  +N LI+GLC  G   +AL+L+ +M          C P+ ++++T+++G  K+ 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWK------CAPNLVSHNTLMEGFYKDG 318

Query: 251 GSANFL 256
              N L
Sbjct: 319 DIRNAL 324



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 9/175 (5%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ VF  M  M  S P + ++N L   L K + +    +L K L   GL P   TY++L
Sbjct: 182 DAIRVFREMGTMHCS-PTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSML 240

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   C   +V     +  ++    F PD      LI  LC+  ++  A +L+  +  + C
Sbjct: 241 MKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKC 300

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEE-MANGNGEFGVVCEPDAITYSTIIDG 245
             ++ ++NTL+ G  + G    AL ++   + NG        EPD I+Y+  + G
Sbjct: 301 APNLVSHNTLMEGFYKDGDIRNALVIWARILRNG-------LEPDIISYNITLKG 348



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/277 (18%), Positives = 100/277 (36%), Gaps = 60/277 (21%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV + +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     ++++E M     E G V   D+ITY                
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMK----ESGFV--EDSITYGI-------------- 99

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                                            L+ G CK   +  +  + +   + G +
Sbjct: 100 ---------------------------------LVHGFCKNGYIDKSLHVLEMAEQKGGV 126

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ +I GLC +  +D          +   +  +G  P+++ YN LIN      + 
Sbjct: 127 LDAFAYSAMINGLCKEANLDRA------LYVLNGMIKSGCKPNVHVYNTLINGLVGASKF 180

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                +F  +     +P  +T+ +LI  L  N  F +
Sbjct: 181 EDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGE 217


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 162/355 (45%), Gaps = 37/355 (10%)

Query: 47  ASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY 106
           A +  F KE C+             EA  +FD ML      P + +FN L   L K  + 
Sbjct: 186 AVISGFYKENCQI------------EAYHLFDEMLKQGIC-PDILTFNKLIHVLCKKGNV 232

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
                LF ++   G+ P+ +T+NI I   C+ G +     +L  I+    TPD +++ +L
Sbjct: 233 QESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTL 292

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           I   C  S+++EA     K+   G E + FTYNT+ING C+ G    A  +  +      
Sbjct: 293 ICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFK-- 350

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
             G +  PD  TYS++I+GLC + G  N      MA F    +  F   ++        +
Sbjct: 351 --GFI--PDEFTYSSLINGLCND-GDMN----RAMAVFYEAMEKGFKHSIIL-------Y 394

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             L+ GL K   +  A +L + +   G  P++ TYN+++ GLC  G + +         +
Sbjct: 395 NTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANG------I 448

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                + G  PD++T+N LI+ +CK   +     I   +L    TPD +T+ +L+
Sbjct: 449 LNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLL 503



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 163/395 (41%), Gaps = 83/395 (21%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ VF+ M +     P V S+N +   L +  ++     ++ R+   G++PD YT+ I
Sbjct: 93  QEAVNVFERM-DFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTI 151

Query: 131 LINCFCKMGR--------------------VSHGFVVLG---------------RILRSC 155
            +  FC  GR                    VS+  V+ G                +L+  
Sbjct: 152 RMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG 211

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             PD +TF  LI  LC +  + E+  LF+K+   G   ++FT+N  I GLCR G    A 
Sbjct: 212 ICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAA 271

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            L E + +          PD I+Y+T+I G CK +       +      S +    F + 
Sbjct: 272 RLLESIVSEG------LTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYN 325

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
            +            I+G CK   ++ A ++ +     G +P+  TY+ LI GLCNDG M+
Sbjct: 326 TI------------INGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMN 373

Query: 336 ET------------KH----YETV-------------FLLFKRLNSTGLFPDLYTYNILI 366
                         KH    Y T+               L K +   G  PD++TYN+++
Sbjct: 374 RAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVV 433

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N  CK+G +S    I    +     PD  TF +LI
Sbjct: 434 NGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLI 468



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 143/334 (42%), Gaps = 65/334 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A+ VF Y    +  +  +  +N L   L+K       L L K +   G  PD +TYN+
Sbjct: 373 NRAMAVF-YEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNL 431

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++N  CKMG +S    +L   +     PD  TF +LI   C +  + +A  +   +   G
Sbjct: 432 VVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV TYNTL+NGLC+       ++ F+ M          C P+ ITY+ +I+  CK+ 
Sbjct: 492 ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKG------CTPNIITYNILIESFCKD- 544

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                                          K+  A ELF+ + 
Sbjct: 545 ----------------------------------------------RKVSEAMELFKEMK 558

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYE---TVFLLFKRLNSTGLFPDLYTYNILIN 367
             GL P++VT   LI GLC++G++D  K YE   T+   +K   ST +F      NI+IN
Sbjct: 559 TRGLTPDIVTLCTLICGLCSNGELD--KAYELFVTIEKEYKFSYSTAIF------NIMIN 610

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            FC+   VS    +F ++  S   PD  T+  +I
Sbjct: 611 AFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMI 644



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 117/278 (42%), Gaps = 65/278 (23%)

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL---------------- 205
            +  +++D   + ++ EA  +F ++  + CE  V +YN ++N L                
Sbjct: 78  VYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRM 137

Query: 206 -------------------CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
                              C TG    AL L   M  G G     CE +A++Y  +I G 
Sbjct: 138 KDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMP-GQG-----CEFNAVSYCAVISGF 191

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC---LNFLCLIDGLCKISKLKIAR 303
            KE         +C      L      F  +  Q +C   L F  LI  LCK   ++ + 
Sbjct: 192 YKE---------NCQIEAYHL------FDEMLKQGICPDILTFNKLIHVLCKKGNVQESE 236

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           +LF  + + G+ PN+ T+NI I+GLC  G +DE         L + + S GL PD+ +YN
Sbjct: 237 KLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAAR------LLESIVSEGLTPDVISYN 290

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            LI  FCK  ++        +++ S   P+  T+ ++I
Sbjct: 291 TLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTII 328



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 105/274 (38%), Gaps = 30/274 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N++   L K         +       G  PD +T+N LI+ +CK   +     +
Sbjct: 424 PDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEI 483

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L    TPD +T+ +L+  LC   ++      F  +   GC  ++ TYN LI   C+
Sbjct: 484 LDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCK 543

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
                 A+ LF+EM            PD +T  T+I GLC   E   A  L  +    + 
Sbjct: 544 DRKVSEAMELFKEMKTRG------LTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYK 597

Query: 266 ALNKMAFYFPLVRVQCLCLN----------------------FLCLIDGLCKISKLKIAR 303
                A +  ++   C  LN                      +  +ID  CK   + +A 
Sbjct: 598 FSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAH 657

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                    GL+P+  T   ++  LC   ++ E 
Sbjct: 658 TFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEA 691



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 38/92 (41%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNI+     +  +      LF ++  +   PD YTY ++I+ +CK G +      L   +
Sbjct: 605 FNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENI 664

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
                P   T   ++  LC   R+ EA  +  
Sbjct: 665 SKGLVPSFTTCGKVLNCLCVTHRLSEAVVIIN 696


>gi|255660964|gb|ACU25651.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 376

 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 153/315 (48%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +     DA  ++++I  LC E+ +  A  + T +   GC+ ++  YNTLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDRALYVLTGMIKSGCKPNIHVYNTLINGLVGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        + C P  ITY+T+I GLCK+       G +       L+K
Sbjct: 179 KFEDAIRVFREMGT------MHCSPTIITYNTLISGLCKK----EMFGEAYNLVKELLDK 228

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                    +    + +  L+ GLC   K++ A +L+  +   G  P+V  +NILI GLC
Sbjct: 229 --------GLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+ RIL + 
Sbjct: 281 SVGKM------QLALSLYFDMNRRKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 390 FTPDAVTFTSLIKIL 404
             PD +++   +K L
Sbjct: 335 LEPDIISYNITLKGL 349



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 148/331 (44%), Gaps = 34/331 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K  + D  L + +     G   D + Y+ 
Sbjct: 76  DEVISIWELMKESGFVEDSIT-YGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+   + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDRALYVLTGMIKSGCKPNIHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLI+GLC+      A NL +E+ +         +P  ITYS ++ GLC + 
Sbjct: 195 CSPTIITYNTLISGLCKKEMFGEAYNLVKELLDKG------LDPGVITYSMLMKGLCLDH 248

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L       ++ +    F  P V++  +      LI GLC + K+++A  L+  + 
Sbjct: 249 KVERALQL-----WNQVTSKGFK-PDVQMHNI------LIHGLCSVGKMQLALSLYFDMN 296

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R    PN+V++N L+ G   DG +          +++ R+   GL PD+ +YNI +   C
Sbjct: 297 RRKCAPNLVSHNTLMEGFYKDGDI------RNALVIWARILRNGLEPDIISYNITLKGLC 350

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              R+S   +         F  DAVT  +++
Sbjct: 351 SCNRISDAIL---------FLHDAVTKKTVL 372



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 147/319 (46%), Gaps = 36/319 (11%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    +FK +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVFKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCF-ELWEMMGSEGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++  EMA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL-EMAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAG-------SANFLGFSCMASFSALNKM-------AF 272
             GV+   DA  YS +I+GLCKEA            +   C  +    N +       + 
Sbjct: 125 --GVL---DAFAYSAMINGLCKEANLDRALYVLTGMIKSGCKPNIHVYNTLINGLVGASK 179

Query: 273 YFPLVRV-------QC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +   +RV        C    + +  LI GLCK      A  L + L   GL P V+TY++
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLISGLCKKEMFGEAYNLVKELLDKGLDPGVITYSM 239

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++GLC D ++      E    L+ ++ S G  PD+  +NILI+  C +G++     ++ 
Sbjct: 240 LMKGLCLDHKV------ERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYF 293

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +      P+ V+  +L++
Sbjct: 294 DMNRRKCAPNLVSHNTLME 312


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 162/330 (49%), Gaps = 28/330 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL + D ML+ R  +P V ++ +L   + K+  +   + +   +   G  P+  TYN++
Sbjct: 194 EALSLLDDMLH-RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVI 252

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  C+ GRV      L R+    F PD V++T+++K LCA  R  +   LF ++    C
Sbjct: 253 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC 312

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T++ L+   CR G    A+ + E+M+ G+G     C  +    + +I+ +CK+  
Sbjct: 313 MPNEVTFDMLVRFFCRGGMVERAIQVLEQMS-GHG-----CAANTTLCNIVINTICKQGR 366

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +        +F  LN M  Y          +++  ++ GLC+  + + A+EL + + R
Sbjct: 367 VDD--------AFQFLNNMGSYG----CSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 414

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
               PN VT+N  I  LC  G +      E   +L ++++  G   ++ TYN L+N FC 
Sbjct: 415 KNCPPNEVTFNTFICILCQKGLI------EQATMLIEQMSEHGCEVNIVTYNALVNGFCV 468

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            GRV S   +F  +   C  P+ +T+T+L+
Sbjct: 469 QGRVDSALELFYSM--PC-KPNTITYTTLL 495



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 143/339 (42%), Gaps = 34/339 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   S+  +   L   K ++ V  LF  +      P+  T+++L+  FC+ G V     
Sbjct: 278 QPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQ 337

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL ++       +      +I  +C + R+ +A      +  +GC  D  +Y T++ GLC
Sbjct: 338 VLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLC 397

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASF 264
           R      A  L +EM   N      C P+ +T++T I  LC++     A  L    M+  
Sbjct: 398 RAERWEDAKELLKEMVRKN------CPPNEVTFNTFICILCQKGLIEQATML-IEQMSEH 450

Query: 265 SALNKMAFYFPLVRVQCL-------------------CLNFLCLIDGLCKISKLKIAREL 305
                +  Y  LV   C+                    + +  L+ GLC   +L  A EL
Sbjct: 451 GCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAEL 510

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
              + +    PNVVT+N+L+   C  G MDE         L +++   G  P+L TYN L
Sbjct: 511 LAEMLQKDCAPNVVTFNVLVSFFCQKGLMDE------AIELVEQMMEHGCTPNLITYNTL 564

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++   K         +   ++ +  +PD VT++S+I +L
Sbjct: 565 LDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVL 603



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 144/342 (42%), Gaps = 38/342 (11%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           NI+   + K    D        +   G  PD  +Y  ++   C+  R      +L  ++R
Sbjct: 355 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 414

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
               P+ VTF + I  LC +  I +A  L  ++   GCE+++ TYN L+NG C  G    
Sbjct: 415 KNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDS 474

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----------------KEAGSANFLG 257
           AL LF         + + C+P+ ITY+T++ GLC                ++  + N + 
Sbjct: 475 ALELF---------YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT 525

Query: 258 FSCMASF---SALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSLP 310
           F+ + SF     L   A       ++  C    + +  L+DG+ K    + A EL   L 
Sbjct: 526 FNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLV 585

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P++VTY+ +I      G +      E    +F  +   G+ P    YN ++   C
Sbjct: 586 SNGVSPDIVTYSSII------GVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALC 639

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           K          F  ++ +   P+ +T+ +LI+ L    F ++
Sbjct: 640 KRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKE 681



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 139/326 (42%), Gaps = 58/326 (17%)

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC---------------- 155
           L  R    G  PD Y    LI   C+ GR S    VL    RS                 
Sbjct: 96  LVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYC 155

Query: 156 ----------------FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
                             PDA T+T +I+ LC   R+ EA +L   +   GC+  V TY 
Sbjct: 156 RYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYT 215

Query: 200 TLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
            L+  +C++     A+ + +EM A G       C P+ +TY+ II+G+C+E    +   F
Sbjct: 216 VLLEAVCKSTGFGQAMEVLDEMRAKG-------CTPNIVTYNVIINGMCREGRVDDAREF 268

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                   LN+++ Y      Q   +++  ++ GLC   + +   ELF  +     MPN 
Sbjct: 269 --------LNRLSSYG----FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNE 316

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           VT+++L+R  C  G +      E    + ++++  G   +    NI+IN  CK GRV   
Sbjct: 317 VTFDMLVRFFCRGGMV------ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDA 370

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKIL 404
           F     +     +PD +++T+++K L
Sbjct: 371 FQFLNNMGSYGCSPDTISYTTVLKGL 396



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 127/294 (43%), Gaps = 42/294 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FN     L +    +    L ++++  G   +  TYN L+N FC  GRV     +
Sbjct: 419 PNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALEL 478

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +   C  P+ +T+T+L+  LC   R+  AA L  ++    C  +V T+N L++  C+
Sbjct: 479 FYSM--PC-KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQ 535

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF--------- 258
            G    A+ L E+M     E G  C P+ ITY+T++DG+ K+  S   L           
Sbjct: 536 KGLMDEAIELVEQMM----EHG--CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGV 589

Query: 259 --------SCMASFSALNKMAFYFPL--------VRVQCLCLNFLCLIDGLCKISKLKIA 302
                   S +   S  +++     +        +R + +  N + L   LCK      A
Sbjct: 590 SPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILL--ALCKRCNTDGA 647

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            + F  +   G MPN +TY  LI GL N+  + ET+       L + L S G+ 
Sbjct: 648 IDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRD------LLRELCSRGVL 695



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 22/233 (9%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P +P   ++  L   L   +  D    L   +      P+  T+N+L++ FC+ G +   
Sbjct: 483 PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 542

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             ++ +++    TP+ +T+ +L+  +  +    EA  L   L   G   D+ TY+++I  
Sbjct: 543 IELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 602

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           L R      A+ +F  +     + G+   P A+ Y+ I+  LCK   +   + F      
Sbjct: 603 LSREDRVEEAIKMFHIVQ----DLGM--RPKAVIYNKILLALCKRCNTDGAIDF------ 650

Query: 265 SALNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                   +  +V   C+   L ++ LI+GL     LK  R+L + L   G++
Sbjct: 651 --------FAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 695



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 286 FLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           +LC  LI  LC+  +   A  + ++  R+G   +V  YN L+ G C  GQ+D  +     
Sbjct: 110 YLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAAR----- 164

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
               + + S  + PD YTY  +I   C  GRV     +   +L     P  VT+T L++ 
Sbjct: 165 ----RLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEA 220

Query: 404 LEINSFFRQV 413
           +  ++ F Q 
Sbjct: 221 VCKSTGFGQA 230


>gi|242069951|ref|XP_002450252.1| hypothetical protein SORBIDRAFT_05g002606 [Sorghum bicolor]
 gi|241936095|gb|EES09240.1| hypothetical protein SORBIDRAFT_05g002606 [Sorghum bicolor]
          Length = 406

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 162/365 (44%), Gaps = 54/365 (14%)

Query: 67  SITPNEALCVFDYMLNMRPSRPP--VTSFNILFGCL--------AKTKHYDTVLSLFKRL 116
           S+  ++AL +FD ML   P   P  VT+FN LF  L        + T   + V+SLF R+
Sbjct: 47  SLGLDDALKLFDEML---PHASPASVTAFNQLFTVLFCASSRRSSSTSESELVVSLFNRM 103

Query: 117 NL---TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
                  + P+ YTY+ILI CFC MG + HGF   G IL++ +  + +  T LIK LC  
Sbjct: 104 VRDCSNKVAPNLYTYSILIGCFCCMGFLEHGFAAFGLILKTGWRVNDIVITHLIKGLCDA 163

Query: 174 SRIMEAA----------ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
            R+ EA            +    +   C  DV +YNT+I G    G    A +LF EM  
Sbjct: 164 KRVDEAMNRAEEALELLQMMADCQGRSCPRDVVSYNTVIKGFFNEGQVDKAYSLFLEMG- 222

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-------FSCMASFSALNKMAFYFPL 276
                     P+ +TY+TIIDGLCK        G       ++C+       +     P 
Sbjct: 223 --------VSPNVVTYTTIIDGLCKAQSVDKADGVKPDHDTYNCLIHGYLSTRQKGIKPD 274

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
           V +  + L+      G      L    +    +   G+ PN   +N +I     +  +DE
Sbjct: 275 VTIYSIMLH------GYGTKGALSEMHDRLNLMVANGISPNHRIFNTMIYAYAKEAMIDE 328

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
             H      +F ++   GL PD  +Y  LI+  CK+GRV    + F +++    TPD V 
Sbjct: 329 AMH------IFIKMKQQGLSPDAVSYAELIDALCKLGRVDDAVLQFKQMINEGVTPDNVV 382

Query: 397 FTSLI 401
           F SL+
Sbjct: 383 FNSLV 387



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FN +    AK    D  + +F ++   GL PD  +Y  LI+  CK+GRV    +   +++
Sbjct: 313 FNTMIYAYAKEAMIDEAMHIFIKMKQQGLSPDAVSYAELIDALCKLGRVDDAVLQFKQMI 372

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
               TPD V F SL+  LC   +  +    F+K
Sbjct: 373 NEGVTPDNVVFNSLVYGLCTVDKWEKVENYFSK 405



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 10/157 (6%)

Query: 57  CKSSGEGDITSITPNEAL--CVFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSL 112
           CK+        + P+     C+    L+ R    +P VT ++I+   L        +  +
Sbjct: 238 CKAQSVDKADGVKPDHDTYNCLIHGYLSTRQKGIKPDVTIYSIM---LHGYGTKGALSEM 294

Query: 113 FKRLNL---TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
             RLNL    G+ P+   +N +I  + K   +     +  ++ +   +PDAV++  LI  
Sbjct: 295 HDRLNLMVANGISPNHRIFNTMIYAYAKEAMIDEAMHIFIKMKQQGLSPDAVSYAELIDA 354

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           LC   R+ +A   F ++   G   D   +N+L+ GLC
Sbjct: 355 LCKLGRVDDAVLQFKQMINEGVTPDNVVFNSLVYGLC 391



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 343 VFLLFKRLN---STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
           V  LF R+    S  + P+LYTY+ILI CFC +G +  GF  FG IL + +  + +  T 
Sbjct: 96  VVSLFNRMVRDCSNKVAPNLYTYSILIGCFCCMGFLEHGFAAFGLILKTGWRVNDIVITH 155

Query: 400 LIKIL 404
           LIK L
Sbjct: 156 LIKGL 160


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 155/335 (46%), Gaps = 32/335 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  V D M+  R   P V ++N+L  C+ K       + + K+++  G+ PD  TYN L
Sbjct: 238 KAHGVMDMMVR-RGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTL 296

Query: 132 INCFCKMGRVSHGFVVLGRILR--SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           I     +  +     +L  ++R  +   P+ VTF S+I+ LC   R+ +A  +   +   
Sbjct: 297 IKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEET 356

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK- 248
           GC +++ TYN LI GL R      A+ L +EM +     G+  EPD+ TYS +I G CK 
Sbjct: 357 GCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTS----LGL--EPDSFTYSILIKGFCKM 410

Query: 249 -EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
            +   A  L  S M       ++  Y PL             +  +C+   ++ AR LF 
Sbjct: 411 WQVDRAEDL-LSTMRDRGIEPELFHYIPL-------------LVAMCEQGMMERARNLFN 456

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +       +VV Y+ +I G C  G +   K       L K +   GL PD  TY+I+IN
Sbjct: 457 EMDN-NFPLDVVAYSTMIHGACKAGDLKTAKE------LLKSIVDEGLTPDAVTYSIVIN 509

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            F K G + +   +  ++  S F PD   F SLI+
Sbjct: 510 MFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQ 544



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 156/351 (44%), Gaps = 56/351 (15%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V  ++ L     K+  ++ V  +F  ++  G+ PD   Y  LI+  CK+G+      
Sbjct: 182 EPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHG 241

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V+  ++R    P+ VT+  LI  +C E  + EA  +  K+   G   DV TYNTLI GL 
Sbjct: 242 VMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLS 301

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A+ L EEM  G      + +P+ +T++++I GLC + G               
Sbjct: 302 DVLEMDEAMWLLEEMVRGKN----IVKPNVVTFNSVIQGLC-DIGRM------------- 343

Query: 267 LNKMAFYFPLVRVQCLCL----NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
             + AF    +  +  C+     +  LI GL ++ K++ A EL   +   GL P+  TY+
Sbjct: 344 --RQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYS 401

Query: 323 ILIRGLCNDGQMDETK----------------HY-------------ETVFLLFKRLNST 353
           ILI+G C   Q+D  +                HY             E    LF  +++ 
Sbjct: 402 ILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNN 461

Query: 354 GLFP-DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
             FP D+  Y+ +I+  CK G + +   +   I+    TPDAVT++ +I +
Sbjct: 462 --FPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINM 510



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 134/290 (46%), Gaps = 37/290 (12%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCF-------TPDAVTFTSLIKDLCAESRI 176
           D  +YN ++   C+ G         G +LR+          P+AV++T L++ LCA+   
Sbjct: 76  DAVSYNTVLTALCRRGHHDRA----GALLRAMSLEPHPACRPNAVSYTVLMRALCADRLA 131

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
            +A  L   +R  G   DV TY TLI GLC       A+ L  EM     E G+  EP+ 
Sbjct: 132 DQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC----ESGI--EPNV 185

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           + YS+++ G CK               +  + K+        ++   + +  LID LCK+
Sbjct: 186 VVYSSLLQGYCKS------------GRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKV 233

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            K K A  +   + R GL PNVVTYN+LI  +C +G + E         + K+++  G+ 
Sbjct: 234 GKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEA------IGVLKKMSEKGVA 287

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRIL--PSCFTPDAVTFTSLIKIL 404
           PD+ TYN LI     +  +     +   ++   +   P+ VTF S+I+ L
Sbjct: 288 PDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGL 337



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 160/353 (45%), Gaps = 44/353 (12%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT---GLFPDRYTYNILINCFC 136
           +L+  PS     S+N +   L +  H+D   +L + ++L       P+  +Y +L+   C
Sbjct: 67  LLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALC 126

Query: 137 KMGRVSHGFVVLGRILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
              R++   V L R +RS     D VT+ +LI+ LC  + + +A  L  ++   G E +V
Sbjct: 127 A-DRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNV 185

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             Y++L+ G C++G       +F EM+    E G+  EPD + Y+ +ID LCK   +   
Sbjct: 186 VVYSSLLQGYCKSGRWEDVGKVFVEMS----EKGI--EPDVVMYTGLIDSLCKVGKAKKA 239

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLC------------------------LNFLCLID 291
            G   M     L      + ++ + C+C                        + +  LI 
Sbjct: 240 HGVMDMMVRRGLEPNVVTYNVL-INCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIK 298

Query: 292 GLCKISKLKIARELFQSLPRAG--LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           GL  + ++  A  L + + R    + PNVVT+N +I+GLC+ G+M +       F +   
Sbjct: 299 GLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQA------FQVRAM 352

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  TG   +L TYN+LI    ++ +V     +   +      PD+ T++ LIK
Sbjct: 353 MEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIK 405



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 50/116 (43%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +++ +     K     T   L K +   GL PD  TY+I+IN F K G +     VL 
Sbjct: 466 VVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLK 525

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           ++  S F PD   F SLI+    +  I +   L  ++      LD    +TL   L
Sbjct: 526 QMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSL 581


>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1016

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 156/335 (46%), Gaps = 49/335 (14%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  FN L     K       L L +R+   GL  D  +YN LIN FCK G       +L 
Sbjct: 147 VIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLH 206

Query: 150 RILRSCFTPDAV---------------------TFTSLIKDLCAESRIMEAAALFTKLRV 188
            I  S    D+V                     T+T++I   C +  + EA AL+ ++ +
Sbjct: 207 EISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMII 266

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   DV TY++++NGLC+ G    A  L  EM     + GV  +P+ + Y+T+ID L K
Sbjct: 267 NGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMK----KMGV--DPNHVAYTTLIDSLFK 320

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIARELF 306
            AGSA +  F+C +             +VR   L L  +C  L+DGL K SK K A ++F
Sbjct: 321 -AGSA-WEAFACQSQL-----------VVRGMTLDL-VMCTTLVDGLFKSSKPKEAEDMF 366

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           ++L +  L+PN +TY  LI G C  G M      E V  L + +    + P++ TY+ +I
Sbjct: 367 RALSKLNLIPNSITYTALIDGYCKVGDM------ERVESLLQEMEEKHINPNVITYSSII 420

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N + K G +     +  ++L     P+A  +  LI
Sbjct: 421 NGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILI 455



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 141/316 (44%), Gaps = 39/316 (12%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
           +L++ + + G  PD  TY+ ++N  CK GR+S    +L  + +    P+ V +T+LI  L
Sbjct: 259 ALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSL 318

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
                  EA A  ++L V G  LD+    TL++GL ++     A ++F  ++  N     
Sbjct: 319 FKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLN----- 373

Query: 231 VCEPDAITYSTIIDGLCKEAG----------------SANFLGFSCMASFSALNKMAFYF 274
              P++ITY+ +IDG CK                   + N + +S +   +   K     
Sbjct: 374 -LIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNVITYSSI--INGYTKKGILD 430

Query: 275 PLVRVQCLCLN---------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             + V    L+         +  LIDG CK  K +IA +L+  +  +GL  N V +++L+
Sbjct: 431 EAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLV 490

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
             L    +MDE +       L K + S GL  D   Y  L++ F K G+ S+   +   +
Sbjct: 491 NNLKRGKRMDEAEE------LLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEM 544

Query: 386 LPSCFTPDAVTFTSLI 401
                  D VT+  LI
Sbjct: 545 TEKSIPFDVVTYNVLI 560



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 133/325 (40%), Gaps = 62/325 (19%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D  T NIL+  FC++G   +G  ++  ++      D + F +LI   C    +  A  L 
Sbjct: 111 DTITCNILVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLV 170

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG---------------EF 228
            ++R  G   D+ +YNTLING C+ G    A +L  E++   G               + 
Sbjct: 171 ERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDD 230

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
            +  E D ITY+TII   CK+ G          A +  +    F  P V      + +  
Sbjct: 231 NLNLEADLITYTTIISTYCKQHGLE-----EARALYEEMIINGF-LPDV------VTYSS 278

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET----------- 337
           +++GLCK  +L  A+EL + + + G+ PN V Y  LI  L   G   E            
Sbjct: 279 IVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRG 338

Query: 338 ---------------------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
                                K  E +F    +LN   L P+  TY  LI+ +CK+G + 
Sbjct: 339 MTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLN---LIPNSITYTALIDGYCKVGDME 395

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
               +   +      P+ +T++S+I
Sbjct: 396 RVESLLQEMEEKHINPNVITYSSII 420



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 138/315 (43%), Gaps = 31/315 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++N+L   L +   Y+   S++  +   GL P++ TYNI+I  +CK G + +   +  
Sbjct: 553 VVTYNVLINGLLEHGKYEAK-SVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWN 611

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      P ++T  +L+  L     I +A  +  ++ V G   ++  +  L+N   ++G
Sbjct: 612 EMKSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSG 671

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK---EAGSANFLGFSCMASFSA 266
                L + E++     + G+    +A  Y+ +I   C+      + + L +     F A
Sbjct: 672 KANAVLQMHEQLV----DMGLKINQEA--YNNLIVVFCRLRMTKKATSVLKYMIRDGFVA 725

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                            + +  LI G C+ S +K A   +  +   G+ PN+VTYN+L+ 
Sbjct: 726 ---------------DTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLG 770

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL   G M E         LF ++   GL PD  TY+ LI+ + KIG       ++  ++
Sbjct: 771 GLLGAGLMAERDE------LFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMV 824

Query: 387 PSCFTPDAVTFTSLI 401
              F P   T+  LI
Sbjct: 825 AQGFVPKTSTYNVLI 839



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 133/309 (43%), Gaps = 36/309 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P +    +L    +K+   + VL + ++L   GL  ++  YN LI  FC++        
Sbjct: 654 HPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATS 713

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL  ++R  F  D VT+ +LI+  C  S + +A A +T++   G   ++ TYN L+ GL 
Sbjct: 714 VLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLL 773

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC-MASFS 265
             G       LF++M   NG       PDA TY T+I G  K       +   C M +  
Sbjct: 774 GAGLMAERDELFDKMKE-NG-----LNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQG 827

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            + K + Y               LI    K+ K+  AREL   +   G+ P+  TY+ILI
Sbjct: 828 FVPKTSTYN-------------VLISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILI 874

Query: 326 RGLCNDGQ---MDET--KHYET-VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            G CN  +   +D T  K Y T    L   +N  G  P          C   I  +SS F
Sbjct: 875 CGWCNLSKHPDLDRTLKKIYRTDAKNLITEMNDKGFVP----------CKSTIACISSTF 924

Query: 380 VIFGRILPS 388
              G++L +
Sbjct: 925 ARPGKMLDA 933



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 129/334 (38%), Gaps = 71/334 (21%)

Query: 121 LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180
           + P    +N LI  F   G VS    +   +L S   P+  T   L+   C    ++ A 
Sbjct: 6   IVPTLLLWNQLIYHFNAFGLVSQVCDIYTEMLCSAVPPNVYTHNVLVHAWCKMGNLILAL 65

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
            L   LR    E+D  TYNT+I G C+ G    A      M   +  F      D IT +
Sbjct: 66  DL---LRNVDVEVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCF------DTITCN 116

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
            ++ G C+  G A + G   M +  +                 + F  LIDG CK  ++ 
Sbjct: 117 ILVKGFCR-IGLAKY-GERIMDNLVSGGTCKD----------VIGFNTLIDGYCKAGEMS 164

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY-----------ETVFL---- 345
           +A +L + + + GL+ ++V+YN LI G C  G+ D+ K             ++VF     
Sbjct: 165 LALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDD 224

Query: 346 -----------------------------------LFKRLNSTGLFPDLYTYNILINCFC 370
                                              L++ +   G  PD+ TY+ ++N  C
Sbjct: 225 RIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLC 284

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K GR+S    +   +      P+ V +T+LI  L
Sbjct: 285 KDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSL 318



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 134/332 (40%), Gaps = 26/332 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ V   ML+     P    + IL     K    +    L+  + L+GL  +   +++
Sbjct: 430 DEAINVMKKMLDQNII-PNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDV 488

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N   +  R+     +L  +       D V +TSL+       +   A  +  ++    
Sbjct: 489 LVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKS 548

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV TYN LINGL   G        +E  +  +G   +   P+  TY+ +I   CK+ 
Sbjct: 549 IPFDVVTYNVLINGLLEHGK-------YEAKSVYSGMIEMGLAPNQATYNIMIKAYCKQG 601

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              N L           N+M  +    ++    +    L+ GL +  +++ A  +   + 
Sbjct: 602 ELDNALEL--------WNEMKSH----KIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMS 649

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ PN+V + +L+      G+ +       V  + ++L   GL  +   YN LI  FC
Sbjct: 650 VMGIHPNLVIHRVLLNASSKSGKAN------AVLQMHEQLVDMGLKINQEAYNNLIVVFC 703

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           ++        +   ++   F  D VT+ +LI+
Sbjct: 704 RLRMTKKATSVLKYMIRDGFVADTVTYNALIR 735


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 155/336 (46%), Gaps = 32/336 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  V D M+  R   P V ++N+L  C+ K       + + K+++  G+ PD  TYN 
Sbjct: 237 KKAHGVMDMMVR-RGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNT 295

Query: 131 LINCFCKMGRVSHGFVVLGRILR--SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           LI     +  +     +L  ++R  +   P+ VTF S+I+ LC   R+ +A  +   +  
Sbjct: 296 LIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEE 355

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            GC +++ TYN LI GL R      A+ L +EM +     G+  EPD+ TYS +I G CK
Sbjct: 356 TGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTS----LGL--EPDSFTYSILIKGFCK 409

Query: 249 --EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
             +   A  L  S M       ++  Y PL             +  +C+   ++ AR LF
Sbjct: 410 MWQVDRAEDL-LSTMRDRGIEPELFHYIPL-------------LVAMCEQGMMERARNLF 455

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +       +VV Y+ +I G C  G +   K       L K +   GL PD  TY+I+I
Sbjct: 456 NEMDN-NFPLDVVAYSTMIHGACKAGDLKTAKE------LLKSIVDEGLTPDAVTYSIVI 508

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           N F K G + +   +  ++  S F PD   F SLI+
Sbjct: 509 NMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQ 544



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 156/351 (44%), Gaps = 56/351 (15%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V  ++ L     K+  ++ V  +F  ++  G+ PD   Y  LI+  CK+G+      
Sbjct: 182 EPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHG 241

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V+  ++R    P+ VT+  LI  +C E  + EA  +  K+   G   DV TYNTLI GL 
Sbjct: 242 VMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLS 301

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A+ L EEM  G      + +P+ +T++++I GLC + G               
Sbjct: 302 DVLEMDEAMWLLEEMVRGKN----IVKPNVVTFNSVIQGLC-DIGRM------------- 343

Query: 267 LNKMAFYFPLVRVQCLCL----NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
             + AF    +  +  C+     +  LI GL ++ K++ A EL   +   GL P+  TY+
Sbjct: 344 --RQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYS 401

Query: 323 ILIRGLCNDGQMDETK----------------HY-------------ETVFLLFKRLNST 353
           ILI+G C   Q+D  +                HY             E    LF  +++ 
Sbjct: 402 ILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNN 461

Query: 354 GLFP-DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
             FP D+  Y+ +I+  CK G + +   +   I+    TPDAVT++ +I +
Sbjct: 462 --FPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINM 510



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 134/290 (46%), Gaps = 37/290 (12%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRS-------CFTPDAVTFTSLIKDLCAESRI 176
           D  +YN ++   C+ G         G +LR+          P+AV++T L++ LCA+   
Sbjct: 76  DAVSYNTVLTALCRRGHHDRA----GALLRAMSLEPHPACRPNAVSYTVLMRALCADRLA 131

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
            +A  L   +R  G   DV TY TLI GLC       A+ L  EM     E G+  EP+ 
Sbjct: 132 DQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMC----ESGI--EPNV 185

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           + YS+++ G CK               +  + K+        ++   + +  LID LCK+
Sbjct: 186 VVYSSLLQGYCKS------------GRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKV 233

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            K K A  +   + R GL PNVVTYN+LI  +C +G + E         + K+++  G+ 
Sbjct: 234 GKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEA------IGVLKKMSEKGVA 287

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRIL--PSCFTPDAVTFTSLIKIL 404
           PD+ TYN LI     +  +     +   ++   +   P+ VTF S+I+ L
Sbjct: 288 PDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGL 337



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 159/353 (45%), Gaps = 44/353 (12%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT---GLFPDRYTYNILINCFC 136
           +L+  PS     S+N +   L +  H+D   +L + ++L       P+  +Y +L+   C
Sbjct: 67  LLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALC 126

Query: 137 KMGRVSHGFVVLGRILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
              R++   V L R +RS     D VT+ +LI+ LC  + + +A  L  ++   G E +V
Sbjct: 127 A-DRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNV 185

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             Y++L+ G C++G       +F EM+    E G+  EPD + Y+ +ID LCK   +   
Sbjct: 186 VVYSSLLQGYCKSGRWEDVGKVFVEMS----EKGI--EPDVVMYTGLIDSLCKVGKAKKA 239

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLC------------------------LNFLCLID 291
            G   M     L      +  V + C+C                        + +  LI 
Sbjct: 240 HGVMDMMVRRGLEPNVVTYN-VLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIK 298

Query: 292 GLCKISKLKIARELFQSLPRAG--LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           GL  + ++  A  L + + R    + PNVVT+N +I+GLC+ G+M +       F +   
Sbjct: 299 GLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQA------FQVRAM 352

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  TG   +L TYN+LI    ++ +V     +   +      PD+ T++ LIK
Sbjct: 353 MEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIK 405



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 50/116 (43%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +++ +     K     T   L K +   GL PD  TY+I+IN F K G +     VL 
Sbjct: 466 VVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLK 525

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           ++  S F PD   F SLI+    +  I +   L  ++      LD    +TL   L
Sbjct: 526 QMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSL 581


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 147/318 (46%), Gaps = 27/318 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V S+N +      T   D    L   + +    PD YTYN LI   C  GR  +   
Sbjct: 117 EPDVMSYNAMVAGYCVTGQLDNARRLVAAMPME---PDTYTYNTLIRGLCGRGRTDNALA 173

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL  +LR    PD VT+T L++  C  S   +A  L  ++R  GC  D+ TYN ++NG+C
Sbjct: 174 VLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGIC 233

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A+   + + +    +G  CEP+ ++Y+ ++ GLC      +      MA  S 
Sbjct: 234 QEGRVDDAMEFLKSLPS----YG--CEPNTVSYNIVLKGLCTAERWED--AEKLMAEMSR 285

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +     P V      + F  LI  LC+   ++ A E+   +P+ G  PN ++YN ++ 
Sbjct: 286 KGR----PPNV------VTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILH 335

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             C   +MD    +  + +      S+G +PD+ +YN L+   C+ G V +   +  ++ 
Sbjct: 336 AFCKQKKMDRAMAFVELMV------SSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLK 389

Query: 387 PSCFTPDAVTFTSLIKIL 404
               TP  +++ ++I  L
Sbjct: 390 DKGCTPVLISYNTVIDGL 407



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 161/366 (43%), Gaps = 36/366 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + AL V D ML  R   P V ++ IL     K   Y   + L   +   G  PD  TYN+
Sbjct: 169 DNALAVLDDMLR-RGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNV 227

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++N  C+ GRV      L  +      P+ V++  ++K LC   R  +A  L  ++   G
Sbjct: 228 VVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKG 287

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +V T+N LI+ LCR G    A+ + +++     ++G  C P++++Y+ I+   CK+ 
Sbjct: 288 RPPNVVTFNMLISFLCRRGLVEPAMEILDQIP----KYG--CTPNSLSYNPILHAFCKQK 341

Query: 251 GSANFLGF-SCMASFSALNKMAFYFPLVRVQC----------------------LCLNFL 287
                + F   M S      +  Y  L+   C                      + +++ 
Sbjct: 342 KMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYN 401

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            +IDGL K  K + A EL   +   GL P+++TY+ +  GLC +G+++E          F
Sbjct: 402 TVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEE------AIKAF 455

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
            ++   G+ P+   YN ++   CK     S   +F  ++ +   P+  T+T LI+ L   
Sbjct: 456 CKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYE 515

Query: 408 SFFRQV 413
              ++ 
Sbjct: 516 GLVKEA 521



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 121/257 (47%), Gaps = 19/257 (7%)

Query: 84  RPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142
           R  RPP V +FN+L   L +    +  + +  ++   G  P+  +YN +++ FCK  ++ 
Sbjct: 285 RKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMD 344

Query: 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
                +  ++ S   PD V++ +L+  LC    +  A  L  +L+  GC   + +YNT+I
Sbjct: 345 RAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVI 404

Query: 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA 262
           +GL + G T  AL L  EM           +PD ITYSTI  GLC+E      +      
Sbjct: 405 DGLTKAGKTEEALELLNEMVTKG------LQPDIITYSTISSGLCREGRIEEAI-----K 453

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
           +F  +  M      +R   +  N + L  GLCK      A +LF  +   G MPN  TY 
Sbjct: 454 AFCKVQDMG-----IRPNTVLYNAILL--GLCKRRATHSAIDLFTYMVSNGCMPNESTYT 506

Query: 323 ILIRGLCNDGQMDETKH 339
           ILI GL  +G + E + 
Sbjct: 507 ILIEGLAYEGLVKEARE 523



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 106/243 (43%), Gaps = 36/243 (14%)

Query: 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
            +LIK LCA  R  EA  +        CE DV +YN ++ G C TG    A  L   M  
Sbjct: 94  AALIKKLCASGRTAEARRVLAS-----CEPDVMSYNAMVAGYCVTGQLDNARRLVAAMP- 147

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL- 282
                    EPD  TY+T+I GLC    + N L              A    ++R  C+ 
Sbjct: 148 --------MEPDTYTYNTLIRGLCGRGRTDNAL--------------AVLDDMLRRGCVP 185

Query: 283 -CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             + +  L++  CK S  K A +L   +   G  P++VTYN+++ G+C +G++D+   + 
Sbjct: 186 DVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEF- 244

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                 K L S G  P+  +YNI++   C   R      +   +      P+ VTF  LI
Sbjct: 245 -----LKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLI 299

Query: 402 KIL 404
             L
Sbjct: 300 SFL 302



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 14/125 (11%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LI  LC   +   AR +  S       P+V++YN ++ G C  GQ+D  +         +
Sbjct: 96  LIKKLCASGRTAEARRVLASCE-----PDVMSYNAMVAGYCVTGQLDNAR---------R 141

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            + +  + PD YTYN LI   C  GR  +   +   +L     PD VT+T L++     S
Sbjct: 142 LVAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRS 201

Query: 409 FFRQV 413
            ++Q 
Sbjct: 202 GYKQA 206



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 56/134 (41%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S+N +   L K    +  L L   +   GL PD  TY+ + +  C+ GR+      
Sbjct: 395 PVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKA 454

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++      P+ V + +++  LC       A  LFT +   GC  +  TY  LI GL  
Sbjct: 455 FCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAY 514

Query: 208 TGHTIVALNLFEEM 221
            G    A  +  E+
Sbjct: 515 EGLVKEAREMMAEL 528


>gi|255660960|gb|ACU25649.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 376

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 153/316 (48%), Gaps = 24/316 (7%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
            V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL
Sbjct: 58  SVSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL 117

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
               +     DA  ++++I  LC E+ +  A ++   +   GC+ +V  YNTLINGL   
Sbjct: 118 EMAEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNDMIKSGCKPNVHVYNTLINGLVGA 177

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                A+ +F EM        + C P  ITY+T+I+GLCK        G +       L+
Sbjct: 178 SKFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKN----EMFGEAYNLVKELLD 227

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
           K         +    + +  L+ GLC   +++ A +L+  +   G  P+V  +NILI GL
Sbjct: 228 K--------GLDPGVITYSMLMKGLCLDHRVERALQLWNQVTSKGFKPDVQMHNILIHGL 279

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C+ G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+ RIL +
Sbjct: 280 CSVGKM------QLALSLYFDMNHWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRN 333

Query: 389 CFTPDAVTFTSLIKIL 404
              PD +++   +K L
Sbjct: 334 GLEPDIISYNITLKGL 349



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 144/326 (44%), Gaps = 34/326 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K  + D  L + +     G   D + Y+ 
Sbjct: 76  DEVISIWELMKESGFVEDSIT-YGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+   + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDRALSVLNDMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A NL +E+ +         +P  ITYS ++ GLC + 
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKG------LDPGVITYSMLMKGLCLDH 248

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L       ++ +    F  P V++  +      LI GLC + K+++A  L+  + 
Sbjct: 249 RVERALQL-----WNQVTSKGFK-PDVQMHNI------LIHGLCSVGKMQLALSLYFDMN 296

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
                PN+V++N L+ G   DG +          +++ R+   GL PD+ +YNI +   C
Sbjct: 297 HWKCAPNLVSHNTLMEGFYKDGDI------RNALVIWARILRNGLEPDIISYNITLKGLC 350

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVT 396
              R+S   +         F  DAVT
Sbjct: 351 SCNRISDAIL---------FLHDAVT 367



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 139/300 (46%), Gaps = 29/300 (9%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K++  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAKRVYKKIVESKVSPDAVVYNAMLNGYFRVAKIKDCF-ELWEMMGSEGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++  EMA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL-EMAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCL 284
             GV+   DA  YS +I+GLCKEA        +   + S LN M  +   P V V     
Sbjct: 125 --GVL---DAFAYSAMINGLCKEA--------NLDRALSVLNDMIKSGCKPNVHV----- 166

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  LI+GL   SK + A  +F+ +      P ++TYN LI GLC +    E       +
Sbjct: 167 -YNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEA------Y 219

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L K L   GL P + TY++L+   C   RV     ++ ++    F PD      LI  L
Sbjct: 220 NLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALQLWNQVTSKGFKPDVQMHNILIHGL 279



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/277 (18%), Positives = 101/277 (36%), Gaps = 60/277 (21%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V  +I+ S  +PDAV + +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAKRVYKKIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     ++++E M     E G V   D+ITY                
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMK----ESGFV--EDSITYGI-------------- 99

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                                            L+ G CK   +  +  + +   + G +
Sbjct: 100 ---------------------------------LVHGFCKNGYIDKSLHVLEMAEQKGGV 126

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ +I GLC +  +D          +   +  +G  P+++ YN LIN      + 
Sbjct: 127 LDAFAYSAMINGLCKEANLDRA------LSVLNDMIKSGCKPNVHVYNTLINGLVGASKF 180

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                +F  +     +P  +T+ +LI  L  N  F +
Sbjct: 181 EDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGE 217


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 162/330 (49%), Gaps = 28/330 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL + D ML+ R  +P V ++ +L   + K+  +   + +   +   G  P+  TYN++
Sbjct: 163 EALSLLDDMLH-RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVI 221

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  C+ GRV      L R+    F PD V++T+++K LCA  R  +   LF ++    C
Sbjct: 222 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC 281

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T++ L+   CR G    A+ + E+M+ G+G     C  +    + +I+ +CK+  
Sbjct: 282 MPNEVTFDMLVRFFCRGGMVERAIQVLEQMS-GHG-----CAANTTLCNIVINTICKQGR 335

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +        +F  LN M  Y          +++  ++ GLC+  + + A+EL + + R
Sbjct: 336 VDD--------AFQFLNNMGSYG----CSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 383

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
               PN VT+N  I  LC  G +      E   +L ++++  G   ++ TYN L+N FC 
Sbjct: 384 KNCPPNEVTFNTFICILCQKGLI------EQATMLIEQMSEHGCEVNIVTYNALVNGFCV 437

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            GRV S   +F  +   C  P+ +T+T+L+
Sbjct: 438 QGRVDSALELFYSM--PC-KPNTITYTTLL 464



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 143/339 (42%), Gaps = 34/339 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   S+  +   L   K ++ V  LF  +      P+  T+++L+  FC+ G V     
Sbjct: 247 QPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQ 306

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL ++       +      +I  +C + R+ +A      +  +GC  D  +Y T++ GLC
Sbjct: 307 VLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLC 366

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASF 264
           R      A  L +EM   N      C P+ +T++T I  LC++     A  L    M+  
Sbjct: 367 RAERWEDAKELLKEMVRKN------CPPNEVTFNTFICILCQKGLIEQATML-IEQMSEH 419

Query: 265 SALNKMAFYFPLVRVQCL-------------------CLNFLCLIDGLCKISKLKIAREL 305
                +  Y  LV   C+                    + +  L+ GLC   +L  A EL
Sbjct: 420 GCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAEL 479

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
              + +    PNVVT+N+L+   C  G MDE         L +++   G  P+L TYN L
Sbjct: 480 LAEMLQKDCAPNVVTFNVLVSFFCQKGLMDE------AIELVEQMMEHGCTPNLITYNTL 533

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++   K         +   ++ +  +PD VT++S+I +L
Sbjct: 534 LDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVL 572



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 149/357 (41%), Gaps = 61/357 (17%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLS---LFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           RP  P  +S N     L +    D +     L  R    G  PD Y    LI   C+ GR
Sbjct: 34  RPEAPSASSPNPANARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGR 93

Query: 141 VSHGFVVLGRILRSC--------------------------------FTPDAVTFTSLIK 168
            S    VL    RS                                   PDA T+T +I+
Sbjct: 94  TSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIR 153

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGE 227
            LC   R+ EA +L   +   GC+  V TY  L+  +C++     A+ + +EM A G   
Sbjct: 154 GLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG--- 210

Query: 228 FGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
               C P+ +TY+ II+G+C+E    +   F        LN+++ Y      Q   +++ 
Sbjct: 211 ----CTPNIVTYNVIINGMCREGRVDDAREF--------LNRLSSYG----FQPDTVSYT 254

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            ++ GLC   + +   ELF  +     MPN VT+++L+R  C  G +      E    + 
Sbjct: 255 TVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMV------ERAIQVL 308

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++++  G   +    NI+IN  CK GRV   F     +     +PD +++T+++K L
Sbjct: 309 EQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 365



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 144/342 (42%), Gaps = 38/342 (11%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           NI+   + K    D        +   G  PD  +Y  ++   C+  R      +L  ++R
Sbjct: 324 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 383

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
               P+ VTF + I  LC +  I +A  L  ++   GCE+++ TYN L+NG C  G    
Sbjct: 384 KNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDS 443

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----------------KEAGSANFLG 257
           AL LF         + + C+P+ ITY+T++ GLC                ++  + N + 
Sbjct: 444 ALELF---------YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT 494

Query: 258 FSCMASF---SALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSLP 310
           F+ + SF     L   A       ++  C    + +  L+DG+ K    + A EL   L 
Sbjct: 495 FNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLV 554

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P++VTY+ +I      G +      E    +F  +   G+ P    YN ++   C
Sbjct: 555 SNGVSPDIVTYSSII------GVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALC 608

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           K          F  ++ +   P+ +T+ +LI+ L    F ++
Sbjct: 609 KRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKE 650



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 127/294 (43%), Gaps = 42/294 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FN     L +    +    L ++++  G   +  TYN L+N FC  GRV     +
Sbjct: 388 PNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALEL 447

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +   C  P+ +T+T+L+  LC   R+  AA L  ++    C  +V T+N L++  C+
Sbjct: 448 FYSM--PC-KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQ 504

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF--------- 258
            G    A+ L E+M     E G  C P+ ITY+T++DG+ K+  S   L           
Sbjct: 505 KGLMDEAIELVEQMM----EHG--CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGV 558

Query: 259 --------SCMASFSALNKMAFYFPL--------VRVQCLCLNFLCLIDGLCKISKLKIA 302
                   S +   S  +++     +        +R + +  N + L   LCK      A
Sbjct: 559 SPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILL--ALCKRCNTDGA 616

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            + F  +   G MPN +TY  LI GL N+  + ET+       L + L S G+ 
Sbjct: 617 IDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRD------LLRELCSRGVL 664



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 22/233 (9%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P +P   ++  L   L   +  D    L   +      P+  T+N+L++ FC+ G +   
Sbjct: 452 PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 511

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             ++ +++    TP+ +T+ +L+  +  +    EA  L   L   G   D+ TY+++I  
Sbjct: 512 IELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 571

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           L R      A+ +F  +     + G+   P A+ Y+ I+  LCK   +   + F      
Sbjct: 572 LSREDRVEEAIKMFHIVQ----DLGM--RPKAVIYNKILLALCKRCNTDGAIDF------ 619

Query: 265 SALNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                   +  +V   C+   L ++ LI+GL     LK  R+L + L   G++
Sbjct: 620 --------FAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 664



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 286 FLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           +LC  LI  LC+  +   A  + ++  R+G   +V  YN L+ G C  GQ+D  +     
Sbjct: 79  YLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAAR----- 133

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
               + + S  + PD YTY  +I   C  GRV     +   +L     P  VT+T L++ 
Sbjct: 134 ----RLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEA 189

Query: 404 LEINSFFRQV 413
           +  ++ F Q 
Sbjct: 190 VCKSTGFGQA 199


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 172/405 (42%), Gaps = 78/405 (19%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGC--LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           +FD ML    S   VT   ++ G   L + K  +TVL+        G+ PD  TY  LI+
Sbjct: 271 LFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAE---HGIHPDVVTYTGLID 327

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK GR +H   +L  ++     P  VT+  L+  LC E  +++A  +   +   G + 
Sbjct: 328 GLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKA 387

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--- 250
           DV TYNTL+ GLC  G    AL LF  M +         EP+  T++ +I GLCKE    
Sbjct: 388 DVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN----CLEPNVFTFNMLIGGLCKEGRLT 443

Query: 251 ------------GSA------NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL----- 287
                       GS       N L   C+ +      M  +      Q L L F+     
Sbjct: 444 KAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELW-----KQVLDLGFVPNSFT 498

Query: 288 --CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK------- 338
              LIDG CK+  L IA+ LF  +   GL P +  YN L+  LC +G +++ K       
Sbjct: 499 YSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMG 558

Query: 339 ----------------------HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
                                  ++ V  L  ++   GL PD  T++ LIN   K+G + 
Sbjct: 559 NANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELD 618

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKIL-------EINSFFRQVA 414
                  R++ S FTPDA+ + SL+K L       EI +   Q+A
Sbjct: 619 EAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMA 663



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 149/330 (45%), Gaps = 25/330 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ +F   L+     P   + N L   LA++++Y    S+++R+    + P   + + L
Sbjct: 57  EAVSLFHSALDFNL-LPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSAL 115

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I CF    +   GF V+G +L+  FT +      ++K LC    + EA  L  ++     
Sbjct: 116 IECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSV 175

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ +YNTLINGLC+      A+ L  EM          C P+++T +T++DGLCK+  
Sbjct: 176 SPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAG------CFPNSVTCTTLMDGLCKDGR 229

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                    M    A+ K  F   +V        +  LI G C    L   +ELF  +  
Sbjct: 230 MD-----EAMELLEAMKKKGFDADVVL-------YGTLISGFCNNGNLDRGKELFDEMLG 277

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+  NVVTY+ L+ GLC  GQ  E         +   +   G+ PD+ TY  LI+  CK
Sbjct: 278 KGISANVVTYSCLVHGLCRLGQWKEAN------TVLNAMAEHGIHPDVVTYTGLIDGLCK 331

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            GR +    +   ++     P  VT+  L+
Sbjct: 332 DGRATHAMDLLNLMVEKGEEPSNVTYNVLL 361



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 140/301 (46%), Gaps = 25/301 (8%)

Query: 71  NEALCVFDYML-NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +EAL +F+ M  N     P V +FN+L G L K       + + +++   G   +  TYN
Sbjct: 406 DEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYN 465

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +L+    K G++     +  ++L   F P++ T++ LI   C    +  A  LF ++R  
Sbjct: 466 MLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTH 525

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G    +F YNTL+  LC+ G    A +LF+EM N N      CEPD I+++T+IDG  K 
Sbjct: 526 GLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNAN------CEPDIISFNTMIDGTLKA 579

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                         F  + ++      + ++   L F  LI+ L K+ +L  A+   + +
Sbjct: 580 ------------GDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERM 627

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             +G  P+ + Y+ L++GL + G   E      +  L  ++ + G   D    + ++ C 
Sbjct: 628 VASGFTPDALVYDSLLKGLSSKGDTTE------IINLLHQMAAKGTVLDRKIVSTILTCL 681

Query: 370 C 370
           C
Sbjct: 682 C 682



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 1/156 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +F  M N     P + SFN +     K   +  V  L  ++   GL PD  T++ L
Sbjct: 549 QAKSLFQEMGNAN-CEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTL 607

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN   K+G +      L R++ S FTPDA+ + SL+K L ++    E   L  ++   G 
Sbjct: 608 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGT 667

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 227
            LD    +T++  LC +   +  + L      G  E
Sbjct: 668 VLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSE 703


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 162/330 (49%), Gaps = 28/330 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL + D ML+ R  +P V ++ +L   + K+  +   + +   +   G  P+  TYN++
Sbjct: 163 EALSLLDDMLH-RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVI 221

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  C+ GRV      L R+    F PD V++T+++K LCA  R  +   LF ++    C
Sbjct: 222 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC 281

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T++ L+   CR G    A+ + E+M+ G+G     C  +    + +I+ +CK+  
Sbjct: 282 MPNEVTFDMLVRFFCRGGMVERAIQVLEQMS-GHG-----CAANTTLCNIVINTICKQGR 335

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +        +F  LN M  Y          +++  ++ GLC+  + + A+EL + + R
Sbjct: 336 VDD--------AFQFLNNMGSYG----CSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 383

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
               PN VT+N  I  LC  G +      E   +L ++++  G   ++ TYN L+N FC 
Sbjct: 384 KNCPPNEVTFNTFICILCQKGLI------EQATMLIEQMSEHGCEVNIVTYNALVNGFCV 437

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            GRV S   +F  +   C  P+ +T+T+L+
Sbjct: 438 QGRVDSALELFYSM--PC-KPNTITYTTLL 464



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 149/357 (41%), Gaps = 61/357 (17%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLS---LFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           RP  P  +S N     L +    D +     L  R    G  PD Y    LI   C+ GR
Sbjct: 34  RPEAPSASSPNPANARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGR 93

Query: 141 VSHGFVVLGRILRSC--------------------------------FTPDAVTFTSLIK 168
            S    VL    RS                                   PDA T+T +I+
Sbjct: 94  TSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIR 153

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGE 227
            LC   R+ EA +L   +   GC+  V TY  L+  +C++     A+ + +EM A G   
Sbjct: 154 GLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG--- 210

Query: 228 FGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
               C P+ +TY+ II+G+C+E    +   F        LN+++ Y      Q   +++ 
Sbjct: 211 ----CTPNIVTYNVIINGMCREGRVDDAREF--------LNRLSSYG----FQPDTVSYT 254

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            ++ GLC   + +   ELF  +     MPN VT+++L+R  C  G +      E    + 
Sbjct: 255 TVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMV------ERAIQVL 308

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++++  G   +    NI+IN  CK GRV   F     +     +PD +++T+++K L
Sbjct: 309 EQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 365



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 142/339 (41%), Gaps = 34/339 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   S+  +   L   K ++ V  LF  +      P+  T+++L+  FC+ G V     
Sbjct: 247 QPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQ 306

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL ++       +      +I  +C + R+ +A      +  +GC  D  +Y T++ GLC
Sbjct: 307 VLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLC 366

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASF 264
           R      A  L +EM   N      C P+ +T++T I  LC++     A  L    M+  
Sbjct: 367 RAERWEDAKELLKEMVRKN------CPPNEVTFNTFICILCQKGLIEQATML-IEQMSEH 419

Query: 265 SALNKMAFYFPLVRVQCL-------------------CLNFLCLIDGLCKISKLKIAREL 305
                +  Y  LV   C+                    + +  L+ GLC   +L  A EL
Sbjct: 420 GCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAEL 479

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
              + +    PNVVT+N+L+   C  G MDE         L +++   G  P+L TYN L
Sbjct: 480 LAEMLQKDCAPNVVTFNVLVSFFCQKGLMDE------AIELVEQMMEHGCTPNLITYNTL 533

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++             +   ++ +  +PD VT++S+I +L
Sbjct: 534 LDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVL 572



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 145/361 (40%), Gaps = 76/361 (21%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           NI+   + K    D        +   G  PD  +Y  ++   C+  R      +L  ++R
Sbjct: 324 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 383

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
               P+ VTF + I  LC +  I +A  L  ++   GCE+++ TYN L+NG C  G    
Sbjct: 384 KNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDS 443

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGS---ANFLGFSCMASFSA 266
           AL LF         + + C+P+ ITY+T++ GLC     +A +   A  L   C  +   
Sbjct: 444 ALELF---------YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT 494

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            N +  +F                   C+   +  A EL + +   G  PN++TYN L+ 
Sbjct: 495 FNVLVSFF-------------------CQKGLMDEAIELVEQMMEHGCTPNLITYNTLLD 535

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF------- 379
           G+ ND   +E         L   L S G+ PD+ TY+ +I    +  RV           
Sbjct: 536 GITNDCNSEE------ALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQ 589

Query: 380 --------VIFGRIL----PSCFT----------------PDAVTFTSLIKILEINSFFR 411
                   VI+ +IL      C T                P+ +T+ +LI+ L    F +
Sbjct: 590 DLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLK 649

Query: 412 Q 412
           +
Sbjct: 650 E 650



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 126/294 (42%), Gaps = 42/294 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FN     L +    +    L ++++  G   +  TYN L+N FC  GRV     +
Sbjct: 388 PNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALEL 447

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +   C  P+ +T+T+L+  LC   R+  AA L  ++    C  +V T+N L++  C+
Sbjct: 448 FYSM--PC-KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQ 504

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF--------- 258
            G    A+ L E+M     E G  C P+ ITY+T++DG+  +  S   L           
Sbjct: 505 KGLMDEAIELVEQMM----EHG--CTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGV 558

Query: 259 --------SCMASFSALNKMAFYFPL--------VRVQCLCLNFLCLIDGLCKISKLKIA 302
                   S +   S  +++     +        +R + +  N + L   LCK      A
Sbjct: 559 SPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILL--ALCKRCNTDGA 616

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            + F  +   G MPN +TY  LI GL N+  + ET+       L + L S G+ 
Sbjct: 617 IDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRD------LLRELCSRGVL 664



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 100/233 (42%), Gaps = 22/233 (9%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P +P   ++  L   L   +  D    L   +      P+  T+N+L++ FC+ G +   
Sbjct: 452 PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEA 511

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             ++ +++    TP+ +T+ +L+  +  +    EA  L   L   G   D+ TY+++I  
Sbjct: 512 IELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGV 571

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           L R      A+ +F  +     + G+   P A+ Y+ I+  LCK   +   + F      
Sbjct: 572 LSREDRVEEAIKMFHIVQ----DLGM--RPKAVIYNKILLALCKRCNTDGAIDF------ 619

Query: 265 SALNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                   +  +V   C+   L ++ LI+GL     LK  R+L + L   G++
Sbjct: 620 --------FAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRGVL 664



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 286 FLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           +LC  LI  LC+  +   A  + ++  R+G   +V  YN L+ G C  GQ+D  +     
Sbjct: 79  YLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAAR----- 133

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
               + + S  + PD YTY  +I   C  GRV     +   +L     P  VT+T L++ 
Sbjct: 134 ----RLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEA 189

Query: 404 LEINSFFRQV 413
           +  ++ F Q 
Sbjct: 190 VCKSTGFGQA 199


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 158/339 (46%), Gaps = 37/339 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN+L   L K         +F  +  TGL P   ++N LIN +CK G +  GF +
Sbjct: 230 PNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRL 289

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      PD  T+++LI  LC E ++ +A  LF ++   G   +  T+ TLING C+
Sbjct: 290 KMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCK 349

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-----EAGS---------- 252
            G   +AL ++++M      F    + D + Y+T+IDGLCK     EA            
Sbjct: 350 NGRVDLALEIYQQM------FTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGL 403

Query: 253 -------ANFLGFSCMASFSALNKMAFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIAR 303
                     L  SC      L  +     +V+  +Q   + F  +I GLC+  K+  A 
Sbjct: 404 IPDKFTYTTLLDGSCKEGDLEL-ALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAE 462

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
              + + RAGL P+  TY +++ G C  G +      +  F L K + S G  P + TYN
Sbjct: 463 RTLREMLRAGLKPDDGTYTMVMDGFCKKGDV------KMGFKLLKEMQSDGHIPGVITYN 516

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +L+N  CK G+V +  ++   +L     PD +T+  L++
Sbjct: 517 VLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQ 555



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 119/254 (46%), Gaps = 28/254 (11%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            IL S + P+  TF  L+  LC E ++ +A  +F ++R  G +    ++NTLING C++G
Sbjct: 222 EILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSG 281

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG--SANFLGFSCMASFSAL 267
           +      L   M     EF V   PD  TYS +IDGLCKE     AN L F  M     +
Sbjct: 282 NLEEGFRLKMVME----EFRVF--PDVFTYSALIDGLCKECQLEDANHL-FKEMCDRGLV 334

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                           + F  LI+G CK  ++ +A E++Q +   GL  ++V YN LI G
Sbjct: 335 PN-------------DVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDG 381

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G   E + +         +   GL PD +TY  L++  CK G +     +   ++ 
Sbjct: 382 LCKGGYFREARKF------VGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVK 435

Query: 388 SCFTPDAVTFTSLI 401
                D V FT++I
Sbjct: 436 EGIQLDNVAFTAII 449



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 129/287 (44%), Gaps = 27/287 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +F  L     K    D  L +++++   GL  D   YN LI+  CK G        
Sbjct: 335 PNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKF 394

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +G + +    PD  T+T+L+   C E  +  A  +  ++   G +LD   +  +I+GLCR
Sbjct: 395 VGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCR 454

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  + A     EM           +PD  TY+ ++DG CK+      +GF  +    + 
Sbjct: 455 DGKIVDAERTLREMLRAG------LKPDDGTYTMVMDGFCKKGDVK--MGFKLLKEMQSD 506

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                + P V      + +  L++GLCK  ++K A  L  ++   G++P+ +TYNIL++G
Sbjct: 507 G----HIPGV------ITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQG 556

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            C  G++ + ++ +T           GL  D  +Y  L++   K  +
Sbjct: 557 HCKHGKLGDFQNVKT---------EMGLVSDYASYRSLLHELSKASK 594



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 24/213 (11%)

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           L+  + +    +VAL  + E+ +          P+  T++ +++ LCKE    +      
Sbjct: 203 LLERMIKMSSPMVALEFYLEILDSG------YPPNVYTFNVLMNRLCKEGKVKD-----A 251

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
              F  + K         +Q   ++F  LI+G CK   L+    L   +    + P+V T
Sbjct: 252 QLIFDEIRKTG-------LQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFT 304

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+ LI GLC + Q+++  H      LFK +   GL P+  T+  LIN  CK GRV     
Sbjct: 305 YSALIDGLCKECQLEDANH------LFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALE 358

Query: 381 IFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           I+ ++       D V + +LI  L    +FR+ 
Sbjct: 359 IYQQMFTKGLKADLVLYNTLIDGLCKGGYFREA 391


>gi|255660996|gb|ACU25667.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 376

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 150/316 (47%), Gaps = 24/316 (7%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
            V+SFNI+   L      D V+S+++ +  +G   D  T+ IL++ FCK G ++    VL
Sbjct: 58  SVSSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITFGILVHGFCKNGYINKSLHVL 117

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
               +     DA  ++++I  LC E+ + +A ++   +   GC+ +   YNTLINGL   
Sbjct: 118 EMAEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNGMIKSGCKPNAHVYNTLINGLVGA 177

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                A+ +F EM        + C P  ITY+T+I+GLCK                  LN
Sbjct: 178 SKFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLN 231

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
                + +            L+ GLC   K++ A +L+  +   G  P+V  +NILI GL
Sbjct: 232 PGVITYSM------------LMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGL 279

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C+ G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+ RIL +
Sbjct: 280 CSVGEM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRN 333

Query: 389 CFTPDAVTFTSLIKIL 404
              PD +++   +K L
Sbjct: 334 GLEPDIISYNITLKGL 349



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 34/326 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T F IL     K  + +  L + +     G   D + Y+ 
Sbjct: 76  DEVISIWELMKKSGFVEDSIT-FGILVHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+A  + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDKAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A NL +E+ +          P  ITYS ++ GLC + 
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKG------LNPGVITYSMLMKGLCLDH 248

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L       ++ +    F  P V++  +      LI GLC + ++++A  L+  + 
Sbjct: 249 KVERALQL-----WNQVTSKGFK-PDVQMHNI------LIHGLCSVGEMQLALSLYFDMN 296

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R    PN+V++N L+ G   DG +          +++ R+   GL PD+ +YNI +   C
Sbjct: 297 RWKCAPNLVSHNTLMEGFYKDGDI------RNALVIWARILRNGLEPDIISYNITLKGLC 350

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVT 396
              R+S   +         F  DAVT
Sbjct: 351 SCNRISDAIL---------FLHDAVT 367



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 62/113 (54%), Gaps = 7/113 (6%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++G  +++K+K   EL++ +   G   +V ++NI++RGL ++G++DE      V  +++
Sbjct: 31  MLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMRGLFDNGKVDE------VISIWE 83

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +  +G   D  T+ IL++ FCK G ++    +           DA  ++++I
Sbjct: 84  LMKKSGFVEDSITFGILVHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYSAMI 136



 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 25/242 (10%)

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C    I  A  ++ ++ +     D   YN ++NG  R         L+E M       G 
Sbjct: 1   CESGDIDGAERVYKEIVLSKVSPDSVVYNAMLNGYFRVAKIKDCFELWEMM-------GS 53

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
                  +++ ++ GL  + G  +      ++ +  + K  F           + F  L+
Sbjct: 54  EGNRSVSSFNIMMRGLF-DNGKVD----EVISIWELMKKSGFVED-------SITFGILV 101

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
            G CK   +  +  + +   + G + +   Y+ +I GLC +  +D+         +   +
Sbjct: 102 HGFCKNGYINKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDKA------VSVLNGM 155

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFF 410
             +G  P+ + YN LIN      +      +F  +     +P  +T+ +LI  L  N  F
Sbjct: 156 IKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMF 215

Query: 411 RQ 412
            +
Sbjct: 216 GE 217


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 156/347 (44%), Gaps = 49/347 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V SFN++   + K    D  + +F+ + +    PD +TY  L++  CK  R+    ++
Sbjct: 186 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 245

Query: 148 LGRI-LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  + +  CF P +VTF  LI  LC +  ++    L   + + GC  +  TYNT+INGLC
Sbjct: 246 LDEMQIEGCF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 304

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A++L + M          C P+ +TY T+I+GL K+  S +  G   ++S   
Sbjct: 305 LKGKLDKAVSLLDRMVASK------CVPNDVTYGTLINGLVKQGRSVD--GVHLLSSLEE 356

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
               A  +           +  LI GL K  K + A  L++ +   G  PN+V Y+ LI 
Sbjct: 357 RGHHANEYA----------YSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALID 406

Query: 327 GLCNDGQMDETKHY-----------------------------ETVFLLFKRLNSTGLFP 357
           GLC +G++DE K                               +    ++K +      P
Sbjct: 407 GLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVP 466

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +   Y++LI+  C+ G++    +++  +L     PD V ++S+I  L
Sbjct: 467 NEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGL 513



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 160/352 (45%), Gaps = 40/352 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + D M  +    P   +FN+L   L K      V  L   + L G  P+  TYN 
Sbjct: 240 DEAVLLLDEM-QIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNT 298

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  C  G++     +L R++ S   P+ VT+ +LI  L  + R ++   L + L   G
Sbjct: 299 IINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERG 358

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              + + Y+TLI+GL +   +  A+ L+++M          C+P+ + YS +IDGLC+E 
Sbjct: 359 HHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKG------CQPNIVVYSALIDGLCREG 412

Query: 251 GSANFLGFSCMA----------SFSALNKMAF-----------YFPLVRVQCLCLNFLC- 288
                    C            ++S+L K  F           +  + +  C+  N +C 
Sbjct: 413 KLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCV-PNEICY 471

Query: 289 --LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LI GLC+  KL+ A  ++  +   GL P+VV Y+ +I GLCN G +      E    L
Sbjct: 472 SVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSV------EVGLKL 525

Query: 347 FKRL--NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
           F  +    +   PD+ TYNIL+   CK   +S    +   +L     PD +T
Sbjct: 526 FNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLIT 577



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 157/337 (46%), Gaps = 30/337 (8%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFK--RLNLTGLFPDRYT 127
           P +A+ +F  M++    R  V SFN +   + +   +   L  ++      T + P+  +
Sbjct: 131 PEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLS 190

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           +N++I   CK+G V     V   +      PD  T+ +L+  LC E RI EA  L  +++
Sbjct: 191 FNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQ 250

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
           + GC     T+N LINGLC+ G  +    L + M      F   C P+ +TY+TII+GLC
Sbjct: 251 IEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNM------FLKGCVPNEVTYNTIINGLC 304

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIAREL 305
                   L      + S L++M      V  +C+   + +  LI+GL K  +      L
Sbjct: 305 --------LKGKLDKAVSLLDRM------VASKCVPNDVTYGTLINGLVKQGRSVDGVHL 350

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
             SL   G   N   Y+ LI GL  + + +E         L+K++   G  P++  Y+ L
Sbjct: 351 LSSLEERGHHANEYAYSTLISGLFKEEKSEEA------MGLWKKMVEKGCQPNIVVYSAL 404

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           I+  C+ G++     I   ++    TP+A T++SLIK
Sbjct: 405 IDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIK 441



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 127/305 (41%), Gaps = 39/305 (12%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +++ L   L K +  +  + L+K++   G  P+   Y+ LI+  C+ G++     +L  +
Sbjct: 365 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 424

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +    TP+A T++SLIK         +A  ++ ++    C  +   Y+ LI+GLC  G  
Sbjct: 425 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 484

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMASFSAL 267
             A+ ++  M       G    PD + YS++I GLC     E G   F    C  S S  
Sbjct: 485 REAMMMWTHM------LGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQP 538

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           + + +                L+  LCK + +  A +L  S+   G  P+++T NI +  
Sbjct: 539 DVVTYNI--------------LLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNA 584

Query: 328 L---CNDGQMDETKHYETVFLLFKRLNSTG------------LFPDLYTYNILINCFCKI 372
           L    N  Q       E V  L KR    G            L P+  T+  +I   CK 
Sbjct: 585 LREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKP 644

Query: 373 GRVSS 377
            +V +
Sbjct: 645 KKVQA 649


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 156/347 (44%), Gaps = 49/347 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V SFN++   + K    D  + +F+ + +    PD +TY  L++  CK  R+    ++
Sbjct: 170 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 229

Query: 148 LGRI-LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  + +  CF P +VTF  LI  LC +  ++    L   + + GC  +  TYNT+INGLC
Sbjct: 230 LDEMQIEGCF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 288

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A++L + M          C P+ +TY T+I+GL K+  S +  G   ++S   
Sbjct: 289 LKGKLDKAVSLLDRMVASK------CVPNDVTYGTLINGLVKQGRSVD--GVHLLSSLEE 340

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
               A  +           +  LI GL K  K + A  L++ +   G  PN+V Y+ LI 
Sbjct: 341 RGHHANEYA----------YSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALID 390

Query: 327 GLCNDGQMDETKHY-----------------------------ETVFLLFKRLNSTGLFP 357
           GLC +G++DE K                               +    ++K +      P
Sbjct: 391 GLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVP 450

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +   Y++LI+  C+ G++    +++  +L     PD V ++S+I  L
Sbjct: 451 NEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGL 497



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 160/352 (45%), Gaps = 40/352 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + D M  +    P   +FN+L   L K      V  L   + L G  P+  TYN 
Sbjct: 224 DEAVLLLDEM-QIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNT 282

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  C  G++     +L R++ S   P+ VT+ +LI  L  + R ++   L + L   G
Sbjct: 283 IINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERG 342

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              + + Y+TLI+GL +   +  A+ L+++M          C+P+ + YS +IDGLC+E 
Sbjct: 343 HHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKG------CQPNIVVYSALIDGLCREG 396

Query: 251 GSANFLGFSCMA----------SFSALNKMAF-----------YFPLVRVQCLCLNFLC- 288
                    C            ++S+L K  F           +  + +  C+  N +C 
Sbjct: 397 KLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCV-PNEICY 455

Query: 289 --LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LI GLC+  KL+ A  ++  +   GL P+VV Y+ +I GLCN G +      E    L
Sbjct: 456 SVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSV------EVGLKL 509

Query: 347 FKRL--NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
           F  +    +   PD+ TYNIL+   CK   +S    +   +L     PD +T
Sbjct: 510 FNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLIT 561



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 157/337 (46%), Gaps = 30/337 (8%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFK--RLNLTGLFPDRYT 127
           P +A+ +F  M++    R  V SFN +   + +   +   L  ++      T + P+  +
Sbjct: 115 PEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLS 174

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           +N++I   CK+G V     V   +      PD  T+ +L+  LC E RI EA  L  +++
Sbjct: 175 FNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQ 234

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
           + GC     T+N LINGLC+ G  +    L + M      F   C P+ +TY+TII+GLC
Sbjct: 235 IEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNM------FLKGCVPNEVTYNTIINGLC 288

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIAREL 305
                   L      + S L++M      V  +C+   + +  LI+GL K  +      L
Sbjct: 289 --------LKGKLDKAVSLLDRM------VASKCVPNDVTYGTLINGLVKQGRSVDGVHL 334

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
             SL   G   N   Y+ LI GL  + + +E         L+K++   G  P++  Y+ L
Sbjct: 335 LSSLEERGHHANEYAYSTLISGLFKEEKSEEA------MGLWKKMVEKGCQPNIVVYSAL 388

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           I+  C+ G++     I   ++    TP+A T++SLIK
Sbjct: 389 IDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIK 425



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 129/316 (40%), Gaps = 39/316 (12%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L  R       +++ L   L K +  +  + L+K++   G  P+   Y+ LI+  C+ G+
Sbjct: 338 LEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGK 397

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     +L  ++    TP+A T++SLIK         +A  ++ ++    C  +   Y+ 
Sbjct: 398 LDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSV 457

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFL 256
           LI+GLC  G    A+ ++  M       G    PD + YS++I GLC     E G   F 
Sbjct: 458 LIHGLCEDGKLREAMMMWTHM------LGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFN 511

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
              C  S S  + + +                L+  LCK + +  A +L  S+   G  P
Sbjct: 512 EMLCQESDSQPDVVTYNI--------------LLRALCKQNSISHAIDLLNSMLDRGCNP 557

Query: 317 NVVTYNILIRGL---CNDGQMDETKHYETVFLLFKRLNSTG------------LFPDLYT 361
           +++T NI +  L    N  Q       E V  L KR    G            L P+  T
Sbjct: 558 DLITCNIFLNALREKLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNAST 617

Query: 362 YNILINCFCKIGRVSS 377
           +  +I   CK  +V +
Sbjct: 618 WERIIPELCKPKKVQA 633


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 172/395 (43%), Gaps = 64/395 (16%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGD+     ++    ++ ML+ R S P V ++N +   L K +  D  + +   +  +G+
Sbjct: 101 EGDL-----DKTYSTYNEMLDQRIS-PNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGV 154

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TYN +++ FC  G+     V L ++      PD VT+ SL+  LC   R  EA  
Sbjct: 155 MPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARK 214

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA-NG----NGEFGV-VC--- 232
           +F  +   G + ++ TY TL+ G    G  +    L + M  NG    +  F + VC   
Sbjct: 215 IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYA 274

Query: 233 --------------------EPDAITYSTIIDGLCKEAGSAN-FLGFSCMASFSALNKMA 271
                                P+A+TY  +I  LCK     +  L F  M          
Sbjct: 275 KQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNI 334

Query: 272 FYFPLVRVQC-------------------LCLN---FLCLIDGLCKISKLKIARELFQSL 309
            Y  L+   C                   +CLN   F  +ID  CK  ++  + +LF  +
Sbjct: 335 VYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLM 394

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            R G+ P+++TY+ LI G C  G+MDE         L   + S G+ PD  TY+ LIN +
Sbjct: 395 VRIGVKPDIITYSTLIDGYCLAGKMDEATK------LLASMVSVGMKPDCVTYSTLINGY 448

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           CKI R+    V+F  +  S  +PD +T+  +++ L
Sbjct: 449 CKISRMKDALVLFREMESSGVSPDIITYNIILQGL 483



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 155/384 (40%), Gaps = 59/384 (15%)

Query: 71  NEALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
            EAL +   M +     PP V S++ +     K    D   S +  +    + P+  TYN
Sbjct: 68  QEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYN 127

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +I   CK   V     VL  +++S   PD +T+ S++   C+  +  EA     K+R  
Sbjct: 128 SIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSD 187

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G E DV TYN+L++ LC+ G    A  +F+ M           +P+  TY T++ G   +
Sbjct: 188 GVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRG------LKPEITTYGTLLQGYATK 241

Query: 250 AGSANFLG----------------FSCM----ASFSALNKMAFYFPLVRVQCL---CLNF 286
                  G                FS +    A    + +    F  +R Q L    + +
Sbjct: 242 GALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTY 301

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH------- 339
             +I  LCK  +++ A   F+ +   GL P  + YN LI GLC   + +  +        
Sbjct: 302 GAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD 361

Query: 340 ----YETVFL------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
                 T+F                   LF  +   G+ PD+ TY+ LI+ +C  G++  
Sbjct: 362 RGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 421

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
              +   ++     PD VT+++LI
Sbjct: 422 ATKLLASMVSVGMKPDCVTYSTLI 445



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 141/336 (41%), Gaps = 63/336 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF--PDRYTY 128
            +A  VFD +L  R   P V S+NIL   L         L L   +   G    PD  +Y
Sbjct: 34  EDARHVFDELL--RRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSY 91

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           + +IN F K G +   +     +L    +P+ VT+ S+I  LC    + +A  + T +  
Sbjct: 92  STVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVK 151

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   D  TYN++++G C +G    A+   ++M +     GV  EPD +TY++       
Sbjct: 152 SGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSD----GV--EPDVVTYNS------- 198

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                                                   L+D LCK  +   AR++F S
Sbjct: 199 ----------------------------------------LMDYLCKNGRCTEARKIFDS 218

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + + GL P + TY  L++G    G + E         L   +   G+ P+ Y ++IL+  
Sbjct: 219 MTKRGLKPEITTYGTLLQGYATKGALVEMHG------LLDLMVRNGIHPNHYVFSILVCA 272

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + K  +V    ++F ++      P+AVT+ ++I IL
Sbjct: 273 YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGIL 308



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 145/328 (44%), Gaps = 27/328 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ VF  M   +   P   ++  + G L K+   +  +  F+++   GL P    YN 
Sbjct: 280 EEAMLVFSKM-RQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 338

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C   +      ++  +L      + + F S+I   C E R++E+  LF  +   G
Sbjct: 339 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 398

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D+ TY+TLI+G C  G    A  L   M +      V  +PD +TYST+I+G CK +
Sbjct: 399 VKPDIITYSTLIDGYCLAGKMDEATKLLASMVS------VGMKPDCVTYSTLINGYCKIS 452

Query: 251 GSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              + L  F  M S               V    + +  ++ GL +  +   A+EL+  +
Sbjct: 453 RMKDALVLFREMESSG-------------VSPDIITYNIILQGLFQTRRTAAAKELYVGI 499

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            ++G    + TYNI++ GLC +   D+         +F+ L    L  +  T+NI+I+  
Sbjct: 500 TKSGRQLELSTYNIILHGLCKNKLTDDA------LRMFQNLCLMDLKLEARTFNIMIDAL 553

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTF 397
            K+GR      +F     +   P+  T+
Sbjct: 554 LKVGRNDEAKDLFVAFSSNGLVPNYWTY 581



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 128/293 (43%), Gaps = 24/293 (8%)

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           LF  +   G+ PD  TY+ LI+ +C  G++     +L  ++     PD VT+++LI   C
Sbjct: 390 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYC 449

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
             SR+ +A  LF ++   G   D+ TYN ++ GL +T  T  A  L+  +     +    
Sbjct: 450 KISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQL--- 506

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
              +  TY+ I+ GLCK   + + L            +M     L+ ++     F  +ID
Sbjct: 507 ---ELSTYNIILHGLCKNKLTDDAL------------RMFQNLCLMDLKLEARTFNIMID 551

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
            L K+ +   A++LF +    GL+PN  TY ++   +   G ++E         LF  + 
Sbjct: 552 ALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQ------LFLSME 605

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             G   D    N ++    + G ++        I    F+ +A T +  I +L
Sbjct: 606 DNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLL 658


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 153/332 (46%), Gaps = 31/332 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +  R  RP V SFN L     K+   +    L   +   G+ PD +T++ LI
Sbjct: 267 ARLVFDE-IPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALI 325

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK GR+  G ++   +      P+ VTFT+LI   C   ++  A   F  +   G  
Sbjct: 326 NGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVR 385

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            D+ TYN LINGLC+ G    A  L  EM A+G        +PD IT++T+IDG CK+  
Sbjct: 386 PDLVTYNALINGLCKVGDLKEARRLVNEMTASG-------LKPDKITFTTLIDGCCKDGD 438

Query: 252 --SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
             SA  +    +     L+ +AF                LI GLC+  ++  A  +   +
Sbjct: 439 MESALEIKRRMVEEGIELDDVAFT--------------ALISGLCREGRVHDAGRMLTDM 484

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             AG  P+  TY ++I   C  G +      +  F L K + S G  P + TYN L+N  
Sbjct: 485 LSAGFKPDDPTYTMVIDCFCKKGDV------KMGFKLLKEMQSDGHVPGVVTYNALMNGL 538

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK G++ +  ++   +L     P+ +T+  L+
Sbjct: 539 CKQGQMKNAKMLLDAMLNVGVAPNDITYNILL 570



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 147/320 (45%), Gaps = 30/320 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P +  FN+L     K         +F  +   GL P   ++N LI+  CK G V  GF +
Sbjct: 246 PKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRL 305

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            G +      PD  TF++LI  LC E R+ E + LF ++   G   +  T+ TLI+G C+
Sbjct: 306 KGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCK 365

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASF 264
            G   +AL  F+ M A G         PD +TY+ +I+GLCK  +   A  L     AS 
Sbjct: 366 GGKVDLALKNFQMMLAQG-------VRPDLVTYNALINGLCKVGDLKEARRLVNEMTASG 418

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
              +K              + F  LIDG CK   ++ A E+ + +   G+  + V +  L
Sbjct: 419 LKPDK--------------ITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTAL 464

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I GLC +G++ +     T  L      S G  PD  TY ++I+CFCK G V  GF +   
Sbjct: 465 ISGLCREGRVHDAGRMLTDML------SAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKE 518

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           +      P  VT+ +L+  L
Sbjct: 519 MQSDGHVPGVVTYNALMNGL 538



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 136/283 (48%), Gaps = 24/283 (8%)

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
           +G  P  Y +N+L++ FCK G V +  +V   I +    P  V+F +LI   C    + E
Sbjct: 242 SGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEE 301

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
              L   +   G   DVFT++ LINGLC+ G       LF+EM       G+V  P+ +T
Sbjct: 302 GFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCG----RGLV--PNGVT 355

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           ++T+IDG CK  G  +      + +F  +        LV        +  LI+GLCK+  
Sbjct: 356 FTTLIDGQCK-GGKVDL----ALKNFQMMLAQGVRPDLV-------TYNALINGLCKVGD 403

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           LK AR L   +  +GL P+ +T+  LI G C DG M      E+   + +R+   G+  D
Sbjct: 404 LKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDM------ESALEIKRRMVEEGIELD 457

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              +  LI+  C+ GRV     +   +L + F PD  T+T +I
Sbjct: 458 DVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVI 500



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 136/298 (45%), Gaps = 30/298 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E   +FD M   R   P   +F  L     K    D  L  F+ +   G+ PD  TYN 
Sbjct: 335 DEGSLLFDEMCG-RGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNA 393

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK+G +     ++  +  S   PD +TFT+LI   C +  +  A  +  ++   G
Sbjct: 394 LINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEG 453

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            ELD   +  LI+GLCR G    A  +  +M +         +PD  TY+ +ID  CK+ 
Sbjct: 454 IELDDVAFTALISGLCREGRVHDAGRMLTDMLSAG------FKPDDPTYTMVIDCFCKKG 507

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                +GF  +    +      + P V      + +  L++GLCK  ++K A+ L  ++ 
Sbjct: 508 DVK--MGFKLLKEMQSDG----HVPGV------VTYNALMNGLCKQGQMKNAKMLLDAML 555

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL-LFKRLNSTGLFPDLYTYNILIN 367
             G+ PN +TYNIL+ G         +KH  +V + +F   +  GL  D  +Y  L+N
Sbjct: 556 NVGVAPNDITYNILLDG--------HSKHGSSVDVDIFN--SEKGLVTDYASYTALVN 603



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 122/268 (45%), Gaps = 30/268 (11%)

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            +   + +   +L S + P    F  L+   C    +  A  +F ++   G    V ++N
Sbjct: 228 EIERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFN 287

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TLI+G C++G       L      G  E   VC PD  T+S +I+GLCKE          
Sbjct: 288 TLISGCCKSGDVEEGFRL-----KGVMESEGVC-PDVFTFSALINGLCKEG--------- 332

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
                  L++ +  F  +  + L  N   F  LIDG CK  K+ +A + FQ +   G+ P
Sbjct: 333 ------RLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRP 386

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           ++VTYN LI GLC  G + E +       L   + ++GL PD  T+  LI+  CK G + 
Sbjct: 387 DLVTYNALINGLCKVGDLKEARR------LVNEMTASGLKPDKITFTTLIDGCCKDGDME 440

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           S   I  R++      D V FT+LI  L
Sbjct: 441 SALEIKRRMVEEGIELDDVAFTALISGL 468


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 168/346 (48%), Gaps = 37/346 (10%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++ +R   P V + N+L G L K +    V   FK +    + PD  T+NILIN  C  G
Sbjct: 123 LMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEG 182

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++     +L ++  S + P  VT+ +++   C + R   A  L  ++   G E D  TYN
Sbjct: 183 KLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYN 242

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLG 257
            L++ LC+   +     L ++M         +  P+ ITY++II+G  KE   G+A  + 
Sbjct: 243 MLVDDLCKNNRSAKGYLLLKKMRK------RMISPNEITYNSIINGFVKEGKIGAATRI- 295

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNF----------------------LCLIDGLCK 295
           F  M+  + L     Y  L+   C   NF                        L++GLC+
Sbjct: 296 FQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCR 355

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
            +K ++++ + + +   G++   + Y  +I GLC +G ++     E+V LL K L   G+
Sbjct: 356 HAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLN-----ESVKLLDKMLKD-GV 409

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            PD+ T+++LIN FC++G++ +   I  ++  +   P+++ +T+LI
Sbjct: 410 VPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLI 455



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 147/296 (49%), Gaps = 26/296 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +     K   Y   L L  ++   G+  D  TYN+L++  CK  R + G+++
Sbjct: 201 PSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLL 260

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++ +   +P+ +T+ S+I     E +I  A  +F ++ +     +  TYN LI+G C 
Sbjct: 261 LKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCH 320

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            G+   AL + E M A G        +P+ ++YS +++GLC+ A            S S 
Sbjct: 321 DGNFEQALTILEMMEATGP-------KPNEVSYSALLNGLCRHA--------KFELSKSI 365

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L +M     +V     C+ +  +IDGLC+   L  + +L   + + G++P+VVT+++LI 
Sbjct: 366 LERMRMNGMIVG----CIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLIN 421

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           G C  G++   K  E +  ++K     GL P+   Y  LI  +CK G V   F ++
Sbjct: 422 GFCRVGKIKNVK--EIICKMYK----AGLAPNSIIYTTLIYNYCKTGDVVEAFKVY 471



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 154/343 (44%), Gaps = 35/343 (10%)

Query: 76  VFDYMLNMRP---SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           VF  ++N  P   S P V  F++L     +       L  F+ + + G  P  YT N+L+
Sbjct: 83  VFGALMNTYPLCKSNPSV--FDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLL 140

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
               K  +V   ++    +L     PD  TF  LI  LC E ++ +A  L  K+   G  
Sbjct: 141 GKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYV 200

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
             V TYNT++N  C+ G    AL L ++M    G  G+  E DA TY+ ++D LCK   S
Sbjct: 201 PSVVTYNTVLNWYCKKGRYKAALELIDQM----GSKGI--EADACTYNMLVDDLCKNNRS 254

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSL 309
           A          +  L KM       R + +  N   +  +I+G  K  K+  A  +FQ +
Sbjct: 255 AK--------GYLLLKKM-------RKRMISPNEITYNSIINGFVKEGKIGAATRIFQEM 299

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
               L+PN VTYN LI G C+DG      ++E    + + + +TG  P+  +Y+ L+N  
Sbjct: 300 SMLNLLPNCVTYNALIDGHCHDG------NFEQALTILEMMEATGPKPNEVSYSALLNGL 353

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           C+  +      I  R+  +      + +T++I  L  N    +
Sbjct: 354 CRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNE 396



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 148/319 (46%), Gaps = 38/319 (11%)

Query: 95  ILFGCLAKTKHYDTV---------LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           ++ GC+A T   D +         + L  ++   G+ PD  T+++LIN FC++G++ +  
Sbjct: 374 MIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVK 433

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            ++ ++ ++   P+++ +T+LI + C    ++EA  ++  +   G + + F  N L++ L
Sbjct: 434 EIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSL 493

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G   VA   F  M+    + G V  P++IT+  II+G      S N L      +FS
Sbjct: 494 CKDGKVGVAEYFFHHMS----KIGNV--PNSITFDCIINGY---GNSGNGL-----KAFS 539

Query: 266 ALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
             ++M  A + P          +  L+  LC+  K K A+ L   L       + VTYN 
Sbjct: 540 MFDEMIKAGHHP------SHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNT 593

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           ++      G + +         LF  +    + PD YTY I+     + G++ +    +G
Sbjct: 594 ILVETFKSGMLTDA------VALFDEMVQRNVLPDSYTYAIIFAGLIRRGKMVAALHFYG 647

Query: 384 RIL-PSCFTPDAVTFTSLI 401
            +L     +P+ V +T+ +
Sbjct: 648 NLLGKGAVSPEKVMYTTFV 666



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 130/308 (42%), Gaps = 22/308 (7%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N+L   L K          F  ++  G  P+  T++ +IN +   G     F +   +++
Sbjct: 487 NVLVSSLCKDGKVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIK 546

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
           +   P   T+  L+K LC   +  EA  L  KL      +D  TYNT++    ++G    
Sbjct: 547 AGHHPSHFTYGGLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTD 606

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
           A+ LF+EM   N        PD+ TY+ I  GL +       L F      + L K A  
Sbjct: 607 AVALFDEMVQRN------VLPDSYTYAIIFAGLIRRGKMVAALHFYG----NLLGKGAVS 656

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
              V        +   +DGL +  + K A    + + + GL  +++  N+++ G    G+
Sbjct: 657 PEKVM-------YTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATNVILNGYSRMGK 709

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           M +     T+       +   + P L TYNIL++ + K   +S    ++  ++ +   PD
Sbjct: 710 MAKAGDIFTMM-----WSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPD 764

Query: 394 AVTFTSLI 401
            +T  SLI
Sbjct: 765 KLTCHSLI 772



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 142/335 (42%), Gaps = 26/335 (7%)

Query: 76   VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
            +F  M +     P + ++NIL    AK K+     +L+  +  TG+FPD+ T + LI  F
Sbjct: 716  IFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGF 775

Query: 136  CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            CK   +  G  +L ++L      D  TF  LI   C    + +A  L   + +F    D+
Sbjct: 776  CKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDM 835

Query: 196  FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             T++++I+ L R      +  L  EM     E G  C PD   Y  +++ +C+       
Sbjct: 836  TTHDSIISVLSRVSTVQESHLLLHEML----ERG--CIPDRRQYIALVNRMCR------- 882

Query: 256  LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                 M       K+      + +    +    L+ GL K  K++ A+ +   + R  L+
Sbjct: 883  -----MGHIHGAFKLKDEMEALGISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLI 937

Query: 316  PNVVTYNILIRGLC-NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            P + T+  L+   C N+  ++  K  +T+     +L       D+  YN+LI+  C  G 
Sbjct: 938  PTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKL-------DVIAYNVLISGLCADGD 990

Query: 375  VSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409
            V+S   ++  I      P+  T+  LI  +  N  
Sbjct: 991  VASALKLYKEIKQRGLWPNMTTYCILIDAIFTNDI 1025


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 165/363 (45%), Gaps = 37/363 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + D M +   S  PV  +N+L   L K      V  L   + L G FP+  TYN 
Sbjct: 239 DEAVLLLDEMQSEGCSPSPVI-YNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNT 297

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C  G++     +L R++ S   P+ VT+ +LI  L  + R M+ A L   +   G
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERG 357

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             L+   Y+ LI+GL + G    A+ L+++MA         C P+ + YS +IDGLC+E 
Sbjct: 358 YRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKG------CRPNIVVYSAVIDGLCRE- 410

Query: 251 GSAN--------FLGFSCMA---SFSALNK-----------MAFYFPLVRVQCLCLNFLC 288
           G  N         +   C+    ++S+L K           +  +  +    C   N  C
Sbjct: 411 GKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGC-SRNEFC 469

Query: 289 ---LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
              LIDGLC + ++K A  ++  +   G+ P+ V Y+ +I+GLC  G MD         L
Sbjct: 470 YSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEML 529

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
             +   S    PD+ TYNIL++  C    VS    +   +L     PD +T  + +  L 
Sbjct: 530 CQEEPKSQ---PDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLS 586

Query: 406 INS 408
             S
Sbjct: 587 EKS 589



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 174/382 (45%), Gaps = 45/382 (11%)

Query: 56  RCKSSGEG--DITSITPNEALC-----VFDYMLNMRPS---RPPVTSFNILFGCLAKTKH 105
           RCK S +    + ++  NE L       +DY++N   +    P   SFN++   L K   
Sbjct: 143 RCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGF 202

Query: 106 YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
            D  + +F+ +      PD YTY  L++  CK  R+    ++L  +     +P  V +  
Sbjct: 203 VDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNV 262

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
           LI  LC +  +     L   + + GC  +  TYNTLI+GLC  G    A++L E M +  
Sbjct: 263 LIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK 322

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSA----------------NFLGFSCMASF----- 264
                 C P+ +TY T+I+GL K+  +                 N   +S + S      
Sbjct: 323 ------CIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEG 376

Query: 265 SALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
            A   M  +  +    C    + +  +IDGLC+  K   A+E+   +  +G +PNV TY+
Sbjct: 377 KAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYS 436

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            L++G    G  +E         +++ ++ TG   + + Y++LI+  C +GRV    +++
Sbjct: 437 SLMKGFFKTGLSEEA------IQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVW 490

Query: 383 GRILPSCFTPDAVTFTSLIKIL 404
            ++L     PD V ++S+IK L
Sbjct: 491 SKMLTIGIKPDTVAYSSMIKGL 512



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 27/228 (11%)

Query: 178 EAAALFTKL-RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
           +A  LF ++   F C+  V ++N+++N +   G     L  ++ + N N    +   P+ 
Sbjct: 130 KAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNI--SPNG 187

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLC 294
           ++++ +I  LCK       LGF   A       +  +  +   +CL     +  L+DGLC
Sbjct: 188 LSFNLVIKALCK-------LGFVDRA-------IEVFRGMPEKKCLPDGYTYCTLMDGLC 233

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE-TKHYETVFLLFKRLNST 353
           K  ++  A  L   +   G  P+ V YN+LI GLC  G +   TK  + +FL        
Sbjct: 234 KEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFL-------K 286

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G FP+  TYN LI+  C  G++     +  R++ S   P+ VT+ +LI
Sbjct: 287 GCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLI 334



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 92/232 (39%), Gaps = 54/232 (23%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           PNEA  + + M++     P V +++ L     KT   +  + +++ ++ TG   + + Y+
Sbjct: 413 PNEAKEILNGMIS-SGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYS 471

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA----------------- 172
           +LI+  C +GRV    +V  ++L     PD V ++S+IK LC                  
Sbjct: 472 VLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQ 531

Query: 173 ---------------------ESRIMEAAALFTKLRVFGCELDVFTYNTLINGL------ 205
                                +  +  A  L   +   GC+ DV T NT +N L      
Sbjct: 532 EEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDS 591

Query: 206 CRTGHT----IVALNLFEEMANGNGE-----FGVVCEPDAITYSTIIDGLCK 248
           C  G +    +VA  L  +  +G  +      G    P   T++ I+  +CK
Sbjct: 592 CEEGRSFLEELVARLLKRQRVSGACKIVEVMLGKYLAPKTSTWAMIVPEICK 643


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/322 (30%), Positives = 143/322 (44%), Gaps = 25/322 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M  M    P V +FN L     K    D V  L + +  +G   D  TYN L
Sbjct: 206 EARSLFSRMKEM-GCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNAL 264

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           INCFCK GR+   +     + R     + VTF++ +   C E  + EA  LF ++RV G 
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            L+ FTY  LI+G C+ G    A+ L +EM        VV      TY+ ++DGLCKE  
Sbjct: 325 ALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVV------TYTVLVDGLCKERK 378

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            A       M   +             V+   L +  LI G       + A  L   +  
Sbjct: 379 VAEAEDVLRMMEKAG------------VRANELLYTTLIHGHFMNKNSEKALGLLSEMKN 426

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL  ++  Y  LI+GLCN  ++DE K       L  +++ +GL P+   Y  +++   K
Sbjct: 427 KGLELDISLYGALIQGLCNVHKLDEAKS------LLTKMDESGLEPNYIIYTTMMDACFK 480

Query: 372 IGRVSSGFVIFGRILPSCFTPD 393
            G+V     +  +IL S F P+
Sbjct: 481 SGKVPEAIAMLQKILDSGFQPN 502



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 160/389 (41%), Gaps = 67/389 (17%)

Query: 70  PNEALCVFDYM----LNMRPSRPPVTSF-NILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           P+ A  + D +    L + P R  + S  + L   LA     D  +    R+    + P+
Sbjct: 97  PHLAASLVDLLHRAALALGPRRSALASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPN 156

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
             T N   +   ++ R   G +V  R+      P+  TF  +I  LC E  + EA +LF+
Sbjct: 157 TRTCN---HILLRLARDRSGRLV-RRLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFS 212

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           +++  GC  DV T+N+LI+G  + G       L EEM          C+ D +TY+ +I+
Sbjct: 213 RMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG------CKADVVTYNALIN 266

Query: 245 GLCK----------------EAGSANFLGFSCMASF---SALNKMAF-YFPLVRVQCLCL 284
             CK                E   AN + FS          L + A   F  +RV+ + L
Sbjct: 267 CFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMAL 326

Query: 285 N---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET---- 337
           N   + CLIDG CK  +L  A  L   + R G+  NVVTY +L+ GLC + ++ E     
Sbjct: 327 NEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVL 386

Query: 338 -------------------------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
                                    K+ E    L   + + GL  D+  Y  LI   C +
Sbjct: 387 RMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNV 446

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            ++     +  ++  S   P+ + +T+++
Sbjct: 447 HKLDEAKSLLTKMDESGLEPNYIIYTTMM 475



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 130/329 (39%), Gaps = 47/329 (14%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +F+       K       + LF ++ + G+  + +TY  LI+  CK GR+    V+L 
Sbjct: 293 VVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLD 352

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++R     + VT+T L+  LC E ++ EA  +   +   G   +   Y TLI+G     
Sbjct: 353 EMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNK 412

Query: 210 HTIVALNLFEEMANGNGEFGV---------VC--------------------EPDAITYS 240
           ++  AL L  EM N   E  +         +C                    EP+ I Y+
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYT 472

Query: 241 TIIDGLCKEAGSA--------NFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCL 289
           T++D  C ++G            L      +   LN+    F  +  + + L+   +  L
Sbjct: 473 TMMDA-CFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTAL 531

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           +DG  K   L  A  L   +  +GL  ++  Y   I G CN   M E +       +F  
Sbjct: 532 LDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEARE------VFSE 585

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           +   G+ PD   YN LI    +I  +  G
Sbjct: 586 MIGHGIAPDRAVYNCLITQIPEIRELGGG 614



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 30/189 (15%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           ++ +  L   L      D   SL  +++ +GL P+   Y  +++   K G+V     +L 
Sbjct: 433 ISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQ 492

Query: 150 RILRSCFTP----------------------DAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           +IL S F P                      D V +T+L+     +  + +A AL  K+ 
Sbjct: 493 KILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMI 552

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL- 246
             G +LD+F Y   I+G C       A  +F EM  G+G       PD   Y+ +I  + 
Sbjct: 553 DSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMI-GHG-----IAPDRAVYNCLITQIP 606

Query: 247 -CKEAGSAN 254
             +E G  N
Sbjct: 607 EIRELGGGN 615


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 150/307 (48%), Gaps = 24/307 (7%)

Query: 95  ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS 154
           +L     K +  D  + L + +   GL PD YTY+ILIN FC   R     ++L  ++  
Sbjct: 246 VLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDV 305

Query: 155 CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA 214
              P+ +T+ +LI     +  I +A  +  ++   G E ++  +NTL+NG+C+ G    A
Sbjct: 306 GLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKA 365

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
           L + +EM     E GV  EPD+ TYS +I+G C+        G +   +F  L++M    
Sbjct: 366 LEIMQEMM----EKGV--EPDSQTYSLLIEGHCR--------GQNMARAFELLDEMKKR- 410

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
              ++    L +  +I+GLC+   L+    + + +   GL PN V Y  L+     +G++
Sbjct: 411 ---KLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRV 467

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           +E++      ++ +R+   G+ PD++ YN LI  FCK  R+         +L     P+A
Sbjct: 468 EESR------MILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNA 521

Query: 395 VTFTSLI 401
            T+ + I
Sbjct: 522 HTYGAFI 528



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 153/350 (43%), Gaps = 34/350 (9%)

Query: 52  FLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
            ++  CK   EG++T     EA  VF ++L+ R  +  V ++++L   L++         
Sbjct: 562 LIEGHCK---EGNVT-----EAFSVFRFILSRRVLQD-VQTYSVLIHGLSRNGKMHEAFG 612

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           +F  L   GL P+ +TYN LI+  CK G V     +L  +      PD VT+  LI  LC
Sbjct: 613 IFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLC 672

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
               I  A  LF  +   G   +  TY  +++G C++ +   A  L EEM       GV 
Sbjct: 673 KAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEML----LRGV- 727

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
             PDA  Y+ I++  CKE      L       F  + +  F           ++F  LI+
Sbjct: 728 -PPDAFIYNVILNFCCKEEKFEKALDL-----FQEMLEKGF--------ASTVSFNTLIE 773

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           G CK  KL+ A  L + +     +PN VTY  LI   C  G M E K       L+  + 
Sbjct: 774 GYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKR------LWLEMQ 827

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              + P   TY  L++ +  IG +S    +F  ++     PD +T+  +I
Sbjct: 828 ERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMI 877



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 150/354 (42%), Gaps = 38/354 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL +   M+  +   P   ++++L     + ++      L   +    L P   TY+++
Sbjct: 364 KALEIMQEMME-KGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVI 422

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  C+ G +     +L  ++ +   P+AV +T+L+     E R+ E+  +  ++R  G 
Sbjct: 423 INGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGI 482

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DVF YN+LI G C+      A     EM            P+A TY   IDG  K AG
Sbjct: 483 LPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERR------LRPNAHTYGAFIDGYSK-AG 535

Query: 252 SANFLG--FSCMASFSALNKMAFYFPLVRVQCLCLN----------------------FL 287
                   F+ M S   L  +  Y  L+   C   N                      + 
Sbjct: 536 EMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYS 595

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI GL +  K+  A  +F  L   GL+PN  TYN LI G C  G +D+         L 
Sbjct: 596 VLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQ------LL 649

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + +   G+ PD+ TYNILI+  CK G +     +F  I     TP+ VT+ +++
Sbjct: 650 EEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMV 703



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 146/328 (44%), Gaps = 33/328 (10%)

Query: 79  YMLNM--RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           Y++ M  R  RP   ++       +K    +     F  +   G+ P+   Y  LI   C
Sbjct: 508 YLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHC 567

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           K G V+  F V   IL      D  T++ LI  L    ++ EA  +F++L+  G   + F
Sbjct: 568 KEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAF 627

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           TYN+LI+G C+ G+   A  L EEM            PD +TY+ +IDGLCK AG     
Sbjct: 628 TYNSLISGSCKQGNVDKASQLLEEMCIKG------INPDIVTYNILIDGLCK-AGE---- 676

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
                     + +    F  +  + L   C+ +  ++DG CK      A +L + +   G
Sbjct: 677 ----------IERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRG 726

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           + P+   YN+++   C +      + +E    LF+ +   G F    ++N LI  +CK G
Sbjct: 727 VPPDAFIYNVILNFCCKE------EKFEKALDLFQEMLEKG-FASTVSFNTLIEGYCKSG 779

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++     +   ++   F P+ VT+TSLI
Sbjct: 780 KLQEANHLLEEMIEKQFIPNHVTYTSLI 807



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 146/354 (41%), Gaps = 45/354 (12%)

Query: 88  PPVTSFNILFG--CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           P + +++IL    C+ K +  +  L L + +++ GL P+  TYN LI+ F + G +   F
Sbjct: 274 PDLYTYDILINGFCMEK-RSREAKLMLLEMIDV-GLKPEPITYNALIDGFMRQGDIEQAF 331

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +   ++      + + + +L+  +C   ++ +A  +  ++   G E D  TY+ LI G 
Sbjct: 332 RIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGH 391

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           CR  +   A  L +EM            P  +TYS II+GLC+     N  G + +    
Sbjct: 392 CRGQNMARAFELLDEMKKRK------LAPTVLTYSVIINGLCR---CGNLQGTNAILREM 442

Query: 266 ALNKMA-----------------------FYFPLVRVQCLCLNFLC---LIDGLCKISKL 299
            +N +                             +R Q +  +  C   LI G CK  ++
Sbjct: 443 VMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRM 502

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
           + AR     +    L PN  TY   I G    G+M+    Y      F  + S G+ P++
Sbjct: 503 EEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRY------FNEMLSCGVLPNV 556

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
             Y  LI   CK G V+  F +F  IL      D  T++ LI  L  N    + 
Sbjct: 557 GIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEA 610



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 138/339 (40%), Gaps = 37/339 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   ++N L     +    +    +   +   G+  +   +N L+N  CK G++     
Sbjct: 308 KPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALE 367

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  ++     PD+ T++ LI+  C    +  A  L  +++       V TY+ +INGLC
Sbjct: 368 IMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLC 427

Query: 207 RTGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN----------- 254
           R G+      +  EM  NG        +P+A+ Y+T++    KE                
Sbjct: 428 RCGNLQGTNAILREMVMNG-------LKPNAVVYTTLMTAHAKEGRVEESRMILERMREQ 480

Query: 255 ------------FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
                        +GF                   R++     +   IDG  K  +++IA
Sbjct: 481 GILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIA 540

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
              F  +   G++PNV  Y  LI G C +G + E       F +F+ + S  +  D+ TY
Sbjct: 541 DRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEA------FSVFRFILSRRVLQDVQTY 594

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++LI+   + G++   F IF  +      P+A T+ SLI
Sbjct: 595 SVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLI 633



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 131/305 (42%), Gaps = 36/305 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++NIL   L K    +   +LF  +   GL P+  TY  +++ +CK    +  F +
Sbjct: 659 PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQL 718

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L     PDA  +  ++   C E +  +A  LF ++   G    V ++NTLI G C+
Sbjct: 719 LEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCK 777

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFL--------- 256
           +G    A +L EEM     E   +  P+ +TY+++ID  CK    G A  L         
Sbjct: 778 SGKLQEANHLLEEMI----EKQFI--PNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNV 831

Query: 257 ------------GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK----ISKLK 300
                       G+  + + S ++ +        ++   + +  +ID  C+    +   K
Sbjct: 832 MPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACK 891

Query: 301 IARE-LFQSLP-RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           +  E L + +P ++G    + T +++ RG    G MDE        + F  +++T    D
Sbjct: 892 LKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGD 951

Query: 359 LYTYN 363
           L   N
Sbjct: 952 LVDGN 956



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 2/150 (1%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL +F  ML          SFN L     K+        L + +      P+  TY  L
Sbjct: 749 KALDLFQEML--EKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSL 806

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK G +     +   +      P A T+TSL+        + E +ALF ++   G 
Sbjct: 807 IDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGI 866

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           E D  TY  +I+  CR G+ + A  L +E+
Sbjct: 867 EPDKMTYYVMIDAYCREGNVMEACKLKDEI 896



 Score = 43.9 bits (102), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 63/148 (42%), Gaps = 6/148 (4%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P   ++  L        +   V +LF+ +   G+ PD+ TY ++I+ +C+ G 
Sbjct: 826 MQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGN 885

Query: 141 VSHG------FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
           V          +V G  ++S F     T + + +       + EAA +   +  FG   +
Sbjct: 886 VMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSN 945

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMA 222
             +   L++G     ++  + NL ++MA
Sbjct: 946 TTSLGDLVDGNQNGANSEDSDNLLKQMA 973


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 162/357 (45%), Gaps = 44/357 (12%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ V   M++ R   P  T+  ++   L      D    L + +   G+  +  TY+ L
Sbjct: 167 DAVQVLQEMVSAR-HVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSAL 225

Query: 132 INCFCKMGRVSHGF-VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++  CK  R+     ++LG + R  FTPD VT++++I  LC   R+ +A  +F ++    
Sbjct: 226 VDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---S 282

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
           C     TYN+LI G CR G    A+ L  +M + N      C PD ITY+T++   CK  
Sbjct: 283 CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDN------CAPDVITYTTLMSAFCKMG 336

Query: 249 ---------EAGSANFLGFSCMASFSAL-----------NKMAFYFPLVRVQC--LCLNF 286
                    +   AN L    + +F++L           + +     + R  C      +
Sbjct: 337 RLDDAYELFQQMVANKLSPD-VVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTY 395

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
            C++DG CK ++++ A EL       G +PN VTYNIL+ G C  G+ D+   Y      
Sbjct: 396 NCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQY------ 449

Query: 347 FKRLNSTG--LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +LNS G      +  Y I+++  C+ GR       +  ++   + P A TF +++
Sbjct: 450 LDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVV 506



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 155/333 (46%), Gaps = 34/333 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
            AL V+  M +  P  P   ++  L   L+K       + + + +      PD  T  ++
Sbjct: 133 HALGVYRQMNDAHP--PDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVV 190

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF-TKLRVFG 190
           +   C   RV     ++  +L      +A+T+++L+  LC   R+ EA AL   ++   G
Sbjct: 191 VQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRG 250

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ TY+T+I+GLC+ G    A+++FEEM+         C P AITY+++I G C+ A
Sbjct: 251 FTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---------CAPTAITYNSLIGGYCR-A 300

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQS 308
           G  +        +   L KM      V   C    + +  L+   CK+ +L  A ELFQ 
Sbjct: 301 GDMD-------EAIRLLGKM------VDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQ 347

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +    L P+VVT+  L+ GLC +G+M      E    L + +   G  P +YTYN +++ 
Sbjct: 348 MVANKLSPDVVTFTSLVDGLCGEGRM------EDALELLEEITRRGCPPTIYTYNCVVDG 401

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +CK  +V     +        F P+ VT+  L+
Sbjct: 402 YCKSNQVRKAEELVADFRSRGFVPNTVTYNILV 434



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 159/360 (44%), Gaps = 37/360 (10%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D   L   L E C +    D T+     A+ +FD M  +       T++  L   L K +
Sbjct: 45  DPVELNTILAELCDAR---DTTT-----AMALFDKMAELGAVNH--TTYYNLIHPLCKAR 94

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
             D  + L   +   G+ P    +N++I   C+ GR+ H   V  R +     PD +T+T
Sbjct: 95  LLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVY-RQMNDAHPPDFLTYT 153

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
            L+  L    R+ +A  +  ++       D  T   ++  LC       A  L EEM + 
Sbjct: 154 KLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHR 213

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL 284
                     +AITYS ++DGLCK       L  +       + +  F   +V       
Sbjct: 214 G------MAANAITYSALVDGLCK----CERLDEAVALLLGEVTRRGFTPDIV------- 256

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  +IDGLCK  +L+ A ++F+ +  A   P  +TYN LI G C  G MDE        
Sbjct: 257 TYSTVIDGLCKAGRLRDAVDIFEEMSCA---PTAITYNSLIGGYCRAGDMDE------AI 307

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L  ++      PD+ TY  L++ FCK+GR+   + +F +++ +  +PD VTFTSL+  L
Sbjct: 308 RLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGL 367



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 129/291 (44%), Gaps = 22/291 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L G   +    D  + L  ++      PD  TY  L++ FCKMGR+   + +
Sbjct: 285 PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYEL 344

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++ +  +PD VTFTSL+  LC E R+ +A  L  ++   GC   ++TYN +++G C+
Sbjct: 345 FQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCK 404

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +     A    EE+       G V  P+ +TY+ ++ G C+   +   L +        L
Sbjct: 405 SNQVRKA----EELVADFRSRGFV--PNTVTYNILVAGCCRAGRTDQALQY-----LDQL 453

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N      P          +  ++D LC+  +   A + ++ + + G +P   T+  ++  
Sbjct: 454 NSEGGPCPTSVAM-----YAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFA 508

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           LC   Q  +         L + +   G  P   T + +++ +C+ G +   
Sbjct: 509 LCKAHQPQQAHE------LLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKA 553



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 22/172 (12%)

Query: 234 PDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
           PD +  +TI+  LC    +   +  F  MA   A+N   +Y               LI  
Sbjct: 44  PDPVELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYN--------------LIHP 89

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LCK   L  A  L   +   G+ P  + +N++I GLC  G++   +H      +++++N 
Sbjct: 90  LCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRL---RH---ALGVYRQMND 143

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               PD  TY  L++   K GR+     +   ++ +   PD  T T +++ L
Sbjct: 144 AH-PPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSL 194



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 2/136 (1%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYT-YNILINCFCKMGRVSHGF 145
           P   ++NIL     +    D  L    +LN  G   P     Y I+++  C+ GR     
Sbjct: 425 PNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAV 484

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
                +++  + P A TF +++  LC   +  +A  L  ++  +G      T + +++  
Sbjct: 485 QFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAY 544

Query: 206 CRTGHTIVALNLFEEM 221
           CR G    A  L  E+
Sbjct: 545 CRAGMIQKADELASEL 560


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 144/311 (46%), Gaps = 18/311 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     +D    + K +   G  PD  TY+ +I   C+  +V   F++   +      P
Sbjct: 262 CLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNP 321

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T LI   C    I +A + F ++R  GC  +V TY  L++   +      A ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIF 381

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL--GFSCMASFSALNKMAFYFPL 276
             M +        C P+ ITYS ++DGLCK AG        ++ +   S      FYF  
Sbjct: 382 NRMIDAG------CPPNTITYSALVDGLCK-AGEIQKACEVYTKLIGTSDNVGSDFYFEG 434

Query: 277 VRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
                +  N +    LIDGLCK  K+  A+EL  ++   G  PN + Y+ LI G C  G+
Sbjct: 435 KHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGK 494

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           +D  +       +F R++  G  P ++TY  LI+   K  R+     +  +++ S  TP+
Sbjct: 495 IDNAQE------VFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPN 548

Query: 394 AVTFTSLIKIL 404
            VT+T++I  L
Sbjct: 549 VVTYTAMIDGL 559



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 147/329 (44%), Gaps = 32/329 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  ++++ +   L +    +    LF+ +   G+ PD YTY ILI+ FCK G +      
Sbjct: 286 PDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSW 345

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +     + + VT+T+L+       ++ +A+ +F ++   GC  +  TY+ L++GLC+
Sbjct: 346 FDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCK 405

Query: 208 TGHTIVALNLFEEMANGNGEFGV----------VCEPDAITYSTIIDGLCKEAGSANFLG 257
            G    A  ++ ++   +   G              P+ +TY  +IDGLCK         
Sbjct: 406 AGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCK--------- 456

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFL--CLIDGLCKISKLKIARELFQSLPRAGLM 315
                +   ++       ++   C   + +   LIDG CK+ K+  A+E+F  + + G +
Sbjct: 457 -----AHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYL 511

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P V TY  LI  +  D ++D          +  ++  +   P++ TY  +I+  C+IG  
Sbjct: 512 PTVHTYTSLIDAMFKDRRLD------LAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGEC 565

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                +   +     +P+ VT+T+LI  L
Sbjct: 566 QKALKLLSMMEEKGCSPNVVTYTALIDGL 594



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 153/402 (38%), Gaps = 85/402 (21%)

Query: 43  VKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAK 102
           V   A+L   L+  C SS      S T +  L  F Y       RP   ++N L   LA 
Sbjct: 6   VAATAALRSSLRRACSSS------SHTADPELKDFGY-------RPSGATYNALVQVLAT 52

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
               D    + K ++ +G   D++T        CK GR S   V+   I R  F  D V 
Sbjct: 53  AGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDALVM---IEREDFKLDTVL 109

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL----------------- 205
            T +I  L   S   EA +   ++R   C  +V TY TL+ G                  
Sbjct: 110 CTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMM 169

Query: 206 ------------------CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
                             C       A  L + MA+        C P  + Y+  I  +C
Sbjct: 170 KEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCG------CPPGYVAYNIFIGSIC 223

Query: 248 --KEAGSANFLGFS------CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
             +E  S + L  +       +AS   LNK              +N       LC + K 
Sbjct: 224 GGEELPSPDLLALAEKVYEEMLASSCVLNK--------------VNTANFARCLCGMGKF 269

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
            +A ++ + +   G +P+  TY+ +I  LC      E    E  FLLF+ + S G+ PD+
Sbjct: 270 DMAFQIIKVMMGKGFVPDTSTYSKVITFLC------EAMKVEKAFLLFQEMKSVGVNPDV 323

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           YTY ILI+ FCK G +      F  +     + + VT+T+L+
Sbjct: 324 YTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALL 365



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 151/340 (44%), Gaps = 27/340 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  + D ML+     P    ++ L     K    D    +F R++  G  P  +TY  L
Sbjct: 462 DAQELLDAMLS-NGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSL 520

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+   K  R+     VL +++ S  TP+ VT+T++I  LC      +A  L + +   GC
Sbjct: 521 IDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGC 580

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +V TY  LI+GL ++G   ++L LF +M+         C P+ +TY  +I+  C    
Sbjct: 581 SPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKG------CAPNYVTYRVLINHCC---- 630

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
           +A  L      + S L++M   +    +Q  C     ++ G  K  K   +  L + L  
Sbjct: 631 AAGLLD----EAHSLLSEMKQTYWPKYLQGYC----SVVQGFSK--KFIASLGLLEELES 680

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDET-KHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            G +P    Y +LI      G+++E  + ++ +  L   LN T    D+YT   LI   C
Sbjct: 681 HGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITS--KDMYTS--LIQALC 736

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-ILEINSF 409
              ++   F ++  I      P+   F  LIK ++++N +
Sbjct: 737 LASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKW 776



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 130/347 (37%), Gaps = 83/347 (23%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   L K         L   +   G  P+   Y+ LI+ FCK+G++ +   V
Sbjct: 442 PNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEV 501

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R+ +  + P   T+TSLI  +  + R+  A  + +++    C  +V TY  +I+GLCR
Sbjct: 502 FLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCR 561

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    AL L   M          C P+ +TY+ +IDGL K                   
Sbjct: 562 IGECQKALKLLSMMEEKG------CSPNVVTYTALIDGLGKSG----------------- 598

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                         K+ ++ +LF  +   G  PN VTY +LI  
Sbjct: 599 ------------------------------KVDLSLQLFIQMSTKGCAPNYVTYRVLINH 628

Query: 328 LCNDGQMDE---------------------------TKHYETVFLLFKRLNSTGLFPDLY 360
            C  G +DE                           +K +     L + L S G  P   
Sbjct: 629 CCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAP 688

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT---FTSLIKIL 404
            Y +LI+ F K GR+     +   ++    + +  +   +TSLI+ L
Sbjct: 689 VYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQAL 735



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 132/319 (41%), Gaps = 46/319 (14%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L +   +D  +S   R+      P+  TY  L+  F K  ++     ++  +++    P+
Sbjct: 117 LMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPN 176

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI------- 212
              F SL+   C       A  L  ++   GC      YN  I  +C  G  +       
Sbjct: 177 PSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSIC-GGEELPSPDLLA 235

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A  ++EEM               +  S +++    +  +ANF    C      + K   
Sbjct: 236 LAEKVYEEM---------------LASSCVLN----KVNTANFARCLC-----GMGKFDM 271

Query: 273 YFPLVRVQCLCLNFL-------CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            F +++V  +   F+        +I  LC+  K++ A  LFQ +   G+ P+V TY ILI
Sbjct: 272 AFQIIKVM-MGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILI 330

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
              C  G +++ + +      F  + S G   ++ TY  L++ + K  ++     IF R+
Sbjct: 331 DSFCKAGLIEQARSW------FDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRM 384

Query: 386 LPSCFTPDAVTFTSLIKIL 404
           + +   P+ +T+++L+  L
Sbjct: 385 IDAGCPPNTITYSALVDGL 403



 Score = 41.6 bits (96), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
           +K +   L L + L   G  P    Y +LI+ F K GR+     +   ++    + +  +
Sbjct: 665 SKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITS 724

Query: 163 ---FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
              +TSLI+ LC  S++ +A  L++++   G   ++  +  LI GL +      AL L
Sbjct: 725 KDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQL 782


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 141/330 (42%), Gaps = 28/330 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +FD M     S P V ++ IL          +  + L   +   G+ P+   Y  +
Sbjct: 280 DARQLFDEM----ASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSV 335

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   C  GRVS    V+  ++      D   +T+++   C +  ++ A   F +++  G 
Sbjct: 336 VALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGL 395

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D  TY TLINGLCR G    A  + +EM           + D +TY+ ++DG CK   
Sbjct: 396 ATDGVTYTTLINGLCRAGELKEAEKVLQEM------LARRLDVDEVTYTVLVDGYCKRGK 449

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            A         +F   N M        V    + +  L DGLCK   ++ A EL   +  
Sbjct: 450 MAE--------AFQVHNTMVQRGVAPNV----VTYTALSDGLCKQGDVQAANELLHEMSN 497

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL  N  TYN LI GLC  G +D+             +++ GL PD+YTY  LI+  CK
Sbjct: 498 KGLELNACTYNSLINGLCKAGYLDQ------AMRTMADMDAAGLKPDVYTYTTLIDALCK 551

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G +     +   +L +   P  VT+  L+
Sbjct: 552 SGELDRAHDLLQEMLDNGIKPTIVTYNVLM 581



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 164/353 (46%), Gaps = 38/353 (10%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFG-CLA-KTKHYDTVLS--LFKRLN 117
           +GD+ S     A   FD M     +   VT   ++ G C A + K  + VL   L +RL+
Sbjct: 377 KGDLVS-----ARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLD 431

Query: 118 LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177
           +     D  TY +L++ +CK G+++  F V   +++    P+ VT+T+L   LC +  + 
Sbjct: 432 V-----DEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQ 486

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
            A  L  ++   G EL+  TYN+LINGLC+ G+   A+    +M           +PD  
Sbjct: 487 AANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAG------LKPDVY 540

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           TY+T+ID LCK +G  +        +   L +M        ++   + +  L++G C   
Sbjct: 541 TYTTLIDALCK-SGELD-------RAHDLLQEMLDNG----IKPTIVTYNVLMNGFCMSG 588

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           +++  ++L + +    + PN  TYN L++  C    M  T        ++K + S  + P
Sbjct: 589 RVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTE------IYKGMCSRNVEP 642

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFF 410
           +  TYNILI   CK   +         ++   F   A ++++LI++L     F
Sbjct: 643 NENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKF 695



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 33/242 (13%)

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           ++  L+K LC   R+ +A  LF ++       DV TY  LI+G C  G    A+ L ++M
Sbjct: 264 SYNILLKVLCGAGRVEDARQLFDEM---ASPPDVVTYGILIHGYCALGELENAVKLLDDM 320

Query: 222 -ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQ 280
            A G        EP+A  Y++++  LC +   ++ L        + +  M  +  ++   
Sbjct: 321 VARG-------VEPNATVYTSVVALLCDKGRVSDAL--------TVVEDMVHHKVILDEA 365

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
                +  ++ G C    L  AR  F  + R GL  + VTY  LI GLC  G++ E    
Sbjct: 366 V----YTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEA--- 418

Query: 341 ETVF--LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
           E V   +L +RL+      D  TY +L++ +CK G+++  F +   ++     P+ VT+T
Sbjct: 419 EKVLQEMLARRLDV-----DEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYT 473

Query: 399 SL 400
           +L
Sbjct: 474 AL 475



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 109/290 (37%), Gaps = 32/290 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  V + M+  R   P V ++  L   L K         L   ++  GL  +  TYN L
Sbjct: 452 EAFQVHNTMVQ-RGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSL 510

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK G +      +  +  +   PD  T+T+LI  LC    +  A  L  ++   G 
Sbjct: 511 INGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGI 570

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST---------- 241
           +  + TYN L+NG C +G       L E M   N        P+A TY++          
Sbjct: 571 KPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKN------IHPNATTYNSLMKQYCIGNN 624

Query: 242 ------IIDGLCKEAGSAN------FLGFSCMASFSALNKMAFYFPLVR--VQCLCLNFL 287
                 I  G+C      N       +   C A  S      F+  ++    +    ++ 
Sbjct: 625 MKSTTEIYKGMCSRNVEPNENTYNILIKGHCKAR-SMKEAQYFHNEMIEKGFRLTASSYS 683

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            LI  L K  K   AR+LF  + + G       YN  I    N+  ++ T
Sbjct: 684 ALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEAT 733



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 13/106 (12%)

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           L  A ELFQ LP      NV +YNIL++ LC  G++++ +       LF  + S    PD
Sbjct: 247 LDEAIELFQGLPDK----NVCSYNILLKVLCGAGRVEDARQ------LFDEMASP---PD 293

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + TY ILI+ +C +G + +   +   ++     P+A  +TS++ +L
Sbjct: 294 VVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALL 339


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 147/321 (45%), Gaps = 29/321 (9%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           NM PS   + S++ LF  L K +  D  L +F+ L   G   D+  Y+ILI  FC  G +
Sbjct: 390 NMEPS---LVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDL 446

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                ++  ++R+   PD   F SL+   C     + A   F  +   G    + T N +
Sbjct: 447 DSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVI 506

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSC 260
           I+  CR G    ALNL  EM    G F     P+  TY+ +I+ LCKE  S   L  F  
Sbjct: 507 IDAHCREGRVEEALNLMNEMQT-QGIF-----PNLFTYNAVINRLCKERKSERALELFPL 560

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           M   + L  +  Y               LIDG  K S  + A  L+  + + G+ P++V 
Sbjct: 561 MLKRNVLPSVVVYS-------------TLIDGFAKQSNSQKALMLYARMLKIGVTPDMVA 607

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y ILI  LC+  +M E       + LFK++   G+ PD  +Y  +I  FC+IG +   + 
Sbjct: 608 YTILINILCHRSRMCEA------YNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWA 661

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +F  +L     P  VT+TSL+
Sbjct: 662 LFNEMLQRGHLPTVVTYTSLV 682



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 148/335 (44%), Gaps = 35/335 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  +N +   L K    D  L + + +   G+ PD YTY+ILI+ FCK G V  G  ++ 
Sbjct: 325 VYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIE 384

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +  S   P  V+++SL   LC +     +  +F  L   G + D   Y+ LI G C  G
Sbjct: 385 EMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQG 444

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALN 268
               A  L EEM   N        PD   + +++ G CK     N L  F+ M     L 
Sbjct: 445 DLDSAHKLMEEMVRNN------LAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILP 498

Query: 269 KMAFYFPLVRVQCL------CLNFL----------------CLIDGLCKISKLKIARELF 306
            +A    ++   C        LN +                 +I+ LCK  K + A ELF
Sbjct: 499 SIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELF 558

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             + +  ++P+VV Y+ LI G        +  + +   +L+ R+   G+ PD+  Y ILI
Sbjct: 559 PLMLKRNVLPSVVVYSTLIDGFA------KQSNSQKALMLYARMLKIGVTPDMVAYTILI 612

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N  C   R+   + +F ++  +  TPD +++TS+I
Sbjct: 613 NILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVI 647



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 158/374 (42%), Gaps = 76/374 (20%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK--MGRVS----HGF 145
           S N L  CLA+    + + SLF+ +  TG  P+ +TY I++N +CK   G          
Sbjct: 216 SCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQAT 275

Query: 146 VVLGRILRSCFTPDAVTFT-----------------------------------SLIKDL 170
            +L  + R+  +P  VT++                                   ++I  L
Sbjct: 276 EILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGL 335

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C +  + EA  +  +++  G   DV+TY+ LI+G C+ G     L L EEM   N     
Sbjct: 336 CKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSN----- 390

Query: 231 VCEPDAITYSTIIDGLCK------------EAGSANF-----------LGFSCMASFSAL 267
             EP  ++YS++  GLCK            + G+A +            GF       + 
Sbjct: 391 -MEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSA 449

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +K+        +     NF  L+ G CK+     A E F  +   G++P++ T N++I  
Sbjct: 450 HKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDA 509

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C +G+++E  +      L   + + G+FP+L+TYN +IN  CK  +      +F  +L 
Sbjct: 510 HCREGRVEEALN------LMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLK 563

Query: 388 SCFTPDAVTFTSLI 401
               P  V +++LI
Sbjct: 564 RNVLPSVVVYSTLI 577



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 130/280 (46%), Gaps = 28/280 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + + N++     +    +  L+L   +   G+FP+ +TYN +IN  CK  +      +
Sbjct: 498 PSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALEL 557

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L+    P  V +++LI     +S   +A  L+ ++   G   D+  Y  LIN LC 
Sbjct: 558 FPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCH 617

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A NLF++M   NG       PD I+Y+++I G C+       +G     +++  
Sbjct: 618 RSRMCEAYNLFKKMTE-NG-----MTPDKISYTSVIAGFCR-------IG-DMRKAWALF 663

Query: 268 NKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           N+M    + P V      + +  L+DG CK++++ IA  L   + R G+ P+VVTYN+LI
Sbjct: 664 NEMLQRGHLPTV------VTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLI 717

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
                 G +D+         +   +   G+ PD  TY +L
Sbjct: 718 AAHRRRGNLDKA------LEMLNEMKENGVLPDHMTYMML 751



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 109/241 (45%), Gaps = 20/241 (8%)

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220
           + F  LIK   A S +  A  +F + +  G EL   + N L+  L          +LFEE
Sbjct: 180 IVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEE 239

Query: 221 MANGNGEFGVVCEPDAITYSTIIDGLCK-EAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           M +          P+  TY+ +++  CK   G A+            + +     P V  
Sbjct: 240 MKSTGPP------PNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNG-ESPTV-- 290

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
               + +   I GLC++  ++ A +  +SL  A  + NV  YN +I GLC  G++DE   
Sbjct: 291 ----VTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEA-- 344

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
                 + + + S G+ PD+YTY+ILI+ FCK G V  G  +   +  S   P  V+++S
Sbjct: 345 ----LKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSS 400

Query: 400 L 400
           L
Sbjct: 401 L 401



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 128/318 (40%), Gaps = 30/318 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  F++L    A     +  + +F +   TGL     + N L+ C  +  R      +  
Sbjct: 179 VIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFE 238

Query: 150 RILRSCFTPDAVTFTSLIKDLC------AESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
            +  +   P+  T+T ++   C      A+    +A  +  ++   G    V TY+T I 
Sbjct: 239 EMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIY 298

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GLCR G+   AL+    + + NG   V C      Y+ II GLCK+      L       
Sbjct: 299 GLCRVGYVESALDFVRSLISANGLVNVYC------YNAIIHGLCKKGELDEALKVLEEMK 352

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              ++   + + +            LI G CK   ++    L + +  + + P++V+Y+ 
Sbjct: 353 SCGISPDVYTYSI------------LIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSS 400

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L  GLC     D +        +F+ L + G   D   Y+ILI  FC  G + S   +  
Sbjct: 401 LFHGLCKKRLSDIS------LDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLME 454

Query: 384 RILPSCFTPDAVTFTSLI 401
            ++ +   PD   F SL+
Sbjct: 455 EMVRNNLAPDPSNFESLV 472



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 7/171 (4%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +F  ML  R   P V  ++ L    AK  +    L L+ R+   G+ PD   Y ILI
Sbjct: 554 ALELFPLMLK-RNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILI 612

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  C   R+   + +  ++  +  TPD +++TS+I   C    + +A ALF ++   G  
Sbjct: 613 NILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHL 672

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
             V TY +L++G C+     +A  L +EM       G+   PD +TY+ +I
Sbjct: 673 PTVVTYTSLVDGYCKMNRIDIADMLIDEMKRK----GIT--PDVVTYNVLI 717



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 7/169 (4%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +AL ++  ML +  + P + ++ IL   L          +LFK++   G+ PD+ +Y  
Sbjct: 587 QKALMLYARMLKIGVT-PDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTS 645

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I  FC++G +   + +   +L+    P  VT+TSL+   C  +RI  A  L  +++  G
Sbjct: 646 VIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKG 705

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
              DV TYN LI    R G+   AL +  EM     E GV+  PD +TY
Sbjct: 706 ITPDVVTYNVLIAAHRRRGNLDKALEMLNEMK----ENGVL--PDHMTY 748


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 141/319 (44%), Gaps = 30/319 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   +FN L     +T+  D    LF ++ L G   D  +Y  LI  FC+ GRV     
Sbjct: 161 RPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEAL- 219

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
               + R    PD  T  +L+K LC   R  E   +  K++  G       Y  L++  C
Sbjct: 220 ---ELFRELEQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWC 276

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFS 265
           R      A  +  EM +     G+V  P A+T + +++  C+E   S     F  M    
Sbjct: 277 REQKAEEAEKMLNEMFDN----GLV--PCAVTCTAVVNAYCREGRMSGAVRVFESM---- 326

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
              K+    P V        +  ++ G C + K+  A  L   +   G+ P+VVTYN+LI
Sbjct: 327 ---KLKGCEPNV------WTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLI 377

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           RG C DG      H E+ F L + +   GL  D YTYN+LI+  CK G+V     +F  +
Sbjct: 378 RGQCIDG------HIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGL 431

Query: 386 LPSCFTPDAVTFTSLIKIL 404
                 P++VTF ++I  L
Sbjct: 432 EYRGIRPNSVTFNTVINGL 450



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 146/334 (43%), Gaps = 29/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F  +      +P + +   L   L   +  +  L + +++   G  P    Y  
Sbjct: 216 DEALELFREL-----EQPDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAA 270

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +C+  +      +L  +  +   P AVT T+++   C E R+  A  +F  +++ G
Sbjct: 271 LVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKG 330

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           CE +V+TYN ++ G C  G    A+ L ++M     E GV  EPD +TY+ +I G C + 
Sbjct: 331 CEPNVWTYNAMVQGFCNVGKVYKAMALLDQMR----ECGV--EPDVVTYNLLIRGQCIDG 384

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              +      +   + L    + + +            LID LCK  K+  A  LF  L 
Sbjct: 385 HIESAFRLLRLMEGNGLAADQYTYNV------------LIDALCKTGKVDEACSLFDGLE 432

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ PN VT+N +I GLC  G+ D            +++ S G  PD YTY+  I   C
Sbjct: 433 YRGIRPNSVTFNTVINGLCKGGKFD------VACTFLEKMVSAGCAPDTYTYSPFIENLC 486

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K      G      +L     P  V +T +I  L
Sbjct: 487 KTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRL 520



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 144/325 (44%), Gaps = 25/325 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ VF+ M  ++   P V ++N +             ++L  ++   G+ PD  TYN+LI
Sbjct: 319 AVRVFESM-KLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLI 377

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              C  G +   F +L  +  +    D  T+  LI  LC   ++ EA +LF  L   G  
Sbjct: 378 RGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIR 437

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            +  T+NT+INGLC+ G   VA    E+M +        C PD  TYS  I+ LCK  GS
Sbjct: 438 PNSVTFNTVINGLCKGGKFDVACTFLEKMVSAG------CAPDTYTYSPFIENLCKTKGS 491

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
              L F        +++M        V+   +N+  +ID L K     +A  ++  +   
Sbjct: 492 REGLSF--------IDEML----QKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSL 539

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  P+VVTY   +R  CN+G++ E    E V +  K+    G+  D   YN LI+    I
Sbjct: 540 GCSPDVVTYTTSVRAYCNEGRLHEA---ENVVMEMKK---GGIIVDAMAYNTLIDGHTSI 593

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTF 397
           G+      I   +      P+  TF
Sbjct: 594 GKTDHAVTILKHMTGVASMPNHFTF 618



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/366 (21%), Positives = 137/366 (37%), Gaps = 79/366 (21%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD  L  R  RP   +FN +   L K   +D   +  +++   G  PD YTY+ 
Sbjct: 422 DEACSLFD-GLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSP 480

Query: 131 LINCFCKMGRVSHGFV-----------------------------------VLGRILRSC 155
            I   CK      G                                     + G+++   
Sbjct: 481 FIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLG 540

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
            +PD VT+T+ ++  C E R+ EA  +  +++  G  +D   YNTLI+G    G T  A+
Sbjct: 541 CSPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAV 600

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            + + M       GV   P+  T                   F  +       ++A   P
Sbjct: 601 TILKHMT------GVASMPNHFT-------------------FFILLRHLLQRRLAEDVP 635

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
           L                + K  +L    ELF+ + +  +  +   Y  ++ G   + ++D
Sbjct: 636 LKTT------------SVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLD 683

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           E     T  +   + +   L  D+YT   L+NCFCK+      + +   ++   F P+ +
Sbjct: 684 EV----TSLVSHMKEDDLPLNEDIYTS--LVNCFCKLRMYPDAWALLCSMIGHGFLPNLI 737

Query: 396 TFTSLI 401
           ++  L+
Sbjct: 738 SYQYLL 743



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 27/207 (13%)

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           T+ +L+    R   T + L LF  M +          P   TY+ +I  LC+ A   +  
Sbjct: 95  TFRSLLTHFSRYALTPLMLRLFAHMYHHGPP-----APTGATYNALIRALCRRADLRHAQ 149

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
            +  +   S     AF             F  LI G C+  +L +A++LF  +P  G   
Sbjct: 150 RYLSLMVRSGWRPDAF------------TFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQ 197

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           + V+Y  LI G C  G++DE         LF+ L      PD+YT+  L+   C   R  
Sbjct: 198 DAVSYAALIEGFCETGRVDE------ALELFRELEQ----PDMYTHAALVKGLCDARRGE 247

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKI 403
            G  +  ++    + P    + +L+ +
Sbjct: 248 EGLYMLQKMKELGWRPATRAYAALVDL 274



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 12/149 (8%)

Query: 101 AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 160
           ++ +  D V SL   +    L  +   Y  L+NCFCK+      + +L  ++   F P+ 
Sbjct: 677 SEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNL 736

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV---ALNL 217
           +++  L+    AE +   A  +F  LR      D   +  +I+GL R GH  +    +++
Sbjct: 737 ISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISI 796

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGL 246
            E+M          C+P   TY+ + + L
Sbjct: 797 LEQMK---------CKPSDETYAMLTEEL 816


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 146/310 (47%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 139 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L    F
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 312

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 313 ------------TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD+ TY ++IN FCK G V  G  +   +  +   
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHA 413

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 414 PSVVTYNVLM 423



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD  TY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG------LKPDKFTYTTLIDGCCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLDTAFEHRKRMI----QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P++ TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 376 GLKPDIGTYTMIINEFCKKGDVWKGSK------LLKEMQRNGHAPSVVTYNVLMN 424



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L    +PD +T+ +LI  LC +  + +A  L  ++ + G + D FTY TLI+G C
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCC 322

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 323 KEGDLDTAFEHRKRMIQEN------IRLDDVAYTALISGLCQEGRSVD------------ 364

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G  P+VVTYN+L+ 
Sbjct: 365 AEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMN 424

Query: 327 G 327
           G
Sbjct: 425 G 425



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+   S P + ++N L   L K         L   +++ GL PD++TY  LI
Sbjct: 260 AMEIYKQMLSQSLS-PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 318

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E R ++A  +  ++   G +
Sbjct: 319 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 193 LD-----------------------------------VFTYNTLING 204
            D                                   V TYN L+NG
Sbjct: 379 PDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 107 VLEHLMKLKYFKLVWGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 160

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI------- 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI       
Sbjct: 161 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 220

Query: 402 KILEINSFFRQV 413
           K+ + N  F ++
Sbjct: 221 KMDDANELFDEM 232


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 157/345 (45%), Gaps = 44/345 (12%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           NMRP+   +T+   L G L K   +   + L+ RL   G   +  T N LI+  CK G +
Sbjct: 518 NMRPNDGLLTT---LVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNM 574

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                +L ++L   F  D +T+ +LI   C E ++ E   L  ++   G E D FTYN L
Sbjct: 575 QEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLL 634

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLG 257
           I+G+CR G    A+NL+ E  + +        P+  TY  +IDG CK    E G   F  
Sbjct: 635 IHGMCRIGKLDEAVNLWNECKSRD------LVPNVYTYGVMIDGYCKADKIEEGEKLFT- 687

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLN----------------------FLCLIDGLCK 295
              +     LN +  Y  L+R  C   N                      +  LI G+C 
Sbjct: 688 -ELLTQNLELNSVV-YNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCN 745

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
           I +++ A+ L   + + GL+PNVV Y  LI G C  GQMD+      V  + + ++S  +
Sbjct: 746 IGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDK------VVNVLQEMSSYDI 799

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
            P+  TY ++I+ + K G + +   +   ++     PD VT+  L
Sbjct: 800 HPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVL 844



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 141/333 (42%), Gaps = 31/333 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A C+ + ML+   S  P  +F  +   L     +++ L   + + L  + P+      L
Sbjct: 471 QAECILEEMLSRGFSINP-GAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTL 529

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   CK G+ S    +  R+L   F  + VT  +LI  LC    + EA  L  K+   G 
Sbjct: 530 VGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGF 589

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            LD  TYNTLI+G C+ G       L  EM           EPD  TY+ +I G+C+   
Sbjct: 590 VLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQG------IEPDTFTYNLLIHGMCR--- 640

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
                          L++    +   + + L  N   +  +IDG CK  K++   +LF  
Sbjct: 641 ------------IGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTE 688

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L    L  N V YN LIR  C +G   E       F L   + S G+ P   TY+ LI+ 
Sbjct: 689 LLTQNLELNSVVYNTLIRAYCRNGNTVE------AFKLHDDMRSKGIPPTTATYSSLIHG 742

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            C IGR+     +   +      P+ V +T+LI
Sbjct: 743 MCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALI 775



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 141/310 (45%), Gaps = 24/310 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++++L   L K + ++   S+ K     G  P+   YN LI+ +CKMG +     + G +
Sbjct: 385 TYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDM 444

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +     P++VT  S+I+  C   ++ +A  +  ++   G  ++   + T+I+ LC     
Sbjct: 445 VSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRF 504

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             AL    EM   N        P+    +T++ GLCKE   ++    +    F  L K  
Sbjct: 505 ESALRFLREMLLRN------MRPNDGLLTTLVGGLCKEGKHSD----AVELWFRLLEK-G 553

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F   LV           LI GLCK   ++ A  L + +   G + + +TYN LI G C +
Sbjct: 554 FGANLVTTN-------ALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKE 606

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G+++E       F L   +   G+ PD +TYN+LI+  C+IG++     ++         
Sbjct: 607 GKVEEG------FKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLV 660

Query: 392 PDAVTFTSLI 401
           P+  T+  +I
Sbjct: 661 PNVYTYGVMI 670



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 143/340 (42%), Gaps = 41/340 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  F+       K    +  + LF  +   G+ P+  TYN LI+  CK G +   F  
Sbjct: 311 PDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRF 370

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++++       +T++ LI  L    +  EA ++  +    G   +   YNTLI+G C+
Sbjct: 371 KEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCK 430

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
            G+   AL +  +M +          P+++T ++II G CK  +   A  +    ++   
Sbjct: 431 MGNLGDALRIRGDMVSKG------INPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGF 484

Query: 266 ALNKMAFYFPLVRVQCLCLN------------------------FLCLIDGLCKISKLKI 301
           ++N  AF      +  LC+N                           L+ GLCK  K   
Sbjct: 485 SINPGAF---TTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSD 541

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A EL+  L   G   N+VT N LI GLC  G M E         L K++   G   D  T
Sbjct: 542 AVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVR------LLKKMLERGFVLDKIT 595

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           YN LI+  CK G+V  GF + G ++     PD  T+  LI
Sbjct: 596 YNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLI 635



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 120/270 (44%), Gaps = 29/270 (10%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++N L     K    +    L   +   G+ PD +TYN+LI+  C++G++     +    
Sbjct: 595 TYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNEC 654

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 P+  T+  +I   C   +I E   LFT+L     EL+   YNTLI   CR G+T
Sbjct: 655 KSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNT 714

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----------------KEAGSANF 255
           + A  L ++M +          P   TYS++I G+C                KE    N 
Sbjct: 715 VEAFKLHDDMRSKG------IPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNV 768

Query: 256 LGFSCM-ASFSALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           + ++ +   +  L +M     +++      +    + +  +IDG  K   +K A +L   
Sbjct: 769 VCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHE 828

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           +   G++P+ VTYN+L  G C +G+++E K
Sbjct: 829 MVGKGIVPDTVTYNVLTNGFCKEGKIEEGK 858



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 25/254 (9%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P   T T L+  L   + + ++  +F  +R  G   DV+ ++T IN  C+ G    A+ L
Sbjct: 277 PTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQL 335

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
           F +M     + GV   P+ +TY+ +I GLCK         F        +N         
Sbjct: 336 FFDME----KLGV--SPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVN--------- 380

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                 + +  LI+GL K+ K   A  + +     G  PN V YN LI G C  G + + 
Sbjct: 381 ---ATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDA 437

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   +   + S G+ P+  T N +I  FCKIG++     I   +L   F+ +   F
Sbjct: 438 ------LRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAF 491

Query: 398 TSLIKILEINSFFR 411
           T++I  L +NS F 
Sbjct: 492 TTIIHWLCMNSRFE 505



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 1/123 (0%)

Query: 88  PPVTS-FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           PP T+ ++ L   +      +    L   +   GL P+   Y  LI  +CK+G++     
Sbjct: 730 PPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVN 789

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL  +      P+ +T+T +I        +  AA L  ++   G   D  TYN L NG C
Sbjct: 790 VLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFC 849

Query: 207 RTG 209
           + G
Sbjct: 850 KEG 852



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 1/111 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A C+ D M       P V  +  L G   K    D V+++ + ++   + P++ TY ++
Sbjct: 751 DAKCLIDEM-RKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVM 809

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           I+ + K G +     +L  ++     PD VT+  L    C E +I E   L
Sbjct: 810 IDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLL 860


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 149/329 (45%), Gaps = 33/329 (10%)

Query: 78  DYMLNMRPSRPPV---TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           D +L +R    P+   T+  +L   L +  H+      F  +   G+ PD  ++  L+  
Sbjct: 134 DMLLELRSHGLPLVVETANWVLRVGLRQRHHFAHARQAFDGM---GVRPDARSFRALVLG 190

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            C+ GR      +L  + R  F+ D+ T T +++  C + R  +   LF ++   G   +
Sbjct: 191 CCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPN 250

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           V  Y   ++GLC+ G+   A ++ EEM  G G      +P+  T++++IDGLCK      
Sbjct: 251 VVNYTAWVDGLCKRGYVKQAFHVLEEMV-GKG-----LKPNVYTHTSLIDGLCK------ 298

Query: 255 FLGFSCMA--SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
            +G++  A   F  L K + Y P V        +  +I G CK  KL  A  L   +   
Sbjct: 299 -IGWTERAFRLFLKLVKSSSYKPNVHT------YTVMIGGYCKEGKLARAEMLLGRMVEQ 351

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           GL PN  TY  LI G C  G  D        F L  ++   G  P++YTYN +I  FCK 
Sbjct: 352 GLAPNTNTYTTLIDGHCRGGSFDR------AFELMNKMKLEGFLPNIYTYNAIIGGFCKK 405

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G++   + +          PD VT+T LI
Sbjct: 406 GKIQQAYKVLRMATSQGLCPDKVTYTMLI 434



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 145/321 (45%), Gaps = 31/321 (9%)

Query: 87  RPPVTSFNIL-FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           RP   SF  L  GC  + + ++   +L   +   G   D  T  +++  FC+ GR     
Sbjct: 178 RPDARSFRALVLGCCQEGR-FEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVP 236

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            + GR++     P+ V +T+ +  LC    + +A  +  ++   G + +V+T+ +LI+GL
Sbjct: 237 GLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGL 296

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G T  A  LF ++   +       +P+  TY+ +I G CKE                
Sbjct: 297 CKIGWTERAFRLFLKLVKSSSY-----KPNVHTYTVMIGGYCKEG--------------- 336

Query: 266 ALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
            L +       +  Q L  N   +  LIDG C+      A EL   +   G +PN+ TYN
Sbjct: 337 KLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYN 396

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            +I G C  G++ +       + + +   S GL PD  TY +LI   CK G ++    +F
Sbjct: 397 AIIGGFCKKGKIQQ------AYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLF 450

Query: 383 GRILPSCFTPDAVTFTSLIKI 403
            ++  +   PD  T+T++I +
Sbjct: 451 NQMAENSCHPDIDTYTTIIAM 471



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 18/252 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++ ++ G   K         L  R+   GL P+  TY  LI+  C+ G     F 
Sbjct: 319 KPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFE 378

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++ ++    F P+  T+ ++I   C + +I +A  +       G   D  TY  LI   C
Sbjct: 379 LMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHC 438

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + GH   AL+LF +MA  +      C PD  TY+TII         A +     M     
Sbjct: 439 KQGHITYALDLFNQMAENS------CHPDIDTYTTII---------AMYCQQRQMEQSQQ 483

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L        LV  +     +  +I G C++ K   A ++F+ + + G +P+ +TY  LI 
Sbjct: 484 LFDKCLSIGLVPTK---QTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALIS 540

Query: 327 GLCNDGQMDETK 338
           GLC + +++E +
Sbjct: 541 GLCKESRLEEAR 552



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 137/316 (43%), Gaps = 31/316 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  L     +   +D    L  ++ L G  P+ YTYN +I  FCK G++   + V
Sbjct: 355 PNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKV 414

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L         PD VT+T LI + C +  I  A  LF ++    C  D+ TY T+I   C+
Sbjct: 415 LRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQ 474

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 +  LF++  +     G+V  P   TY+++I G C+   S + L           
Sbjct: 475 QRQMEQSQQLFDKCLS----IGLV--PTKQTYTSMIAGYCRVGKSTSAL----------- 517

Query: 268 NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                +  +V+  CL   + +  LI GLCK S+L+ AR LF+++    ++P  VT   L 
Sbjct: 518 ---KVFERMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTLA 574

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
              C   + D+T    T+ + F  L+        +  + L+     +  + +  +    +
Sbjct: 575 YEYC---RRDKT----TIAVSF--LDGLDKRQQAHAADALVRKLSAVDNLDAASLFLKNV 625

Query: 386 LPSCFTPDAVTFTSLI 401
           L   +  D  T+TS I
Sbjct: 626 LDKHYAVDHATYTSFI 641



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 40/253 (15%)

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLIN-GLCRTGHTIVALNLFEEMANGNGEFGVVC 232
           +R+ EA  +  +LR  G  L V T N ++  GL +  H   A   F+         G+  
Sbjct: 127 NRLREATDMLLELRSHGLPLVVETANWVLRVGLRQRHHFAHARQAFD---------GMGV 177

Query: 233 EPDAITYSTIIDGLCKEA--GSANFL-------GFSCMASFSALNKMAF----------- 272
            PDA ++  ++ G C+E     A+ L       GFS  ++   +   AF           
Sbjct: 178 RPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPG 237

Query: 273 -YFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
            +  +V +      +N+   +DGLCK   +K A  + + +   GL PNV T+  LI GLC
Sbjct: 238 LFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLC 297

Query: 330 NDGQMDETKHYETVFLLFKRL-NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
             G        E  F LF +L  S+   P+++TY ++I  +CK G+++   ++ GR++  
Sbjct: 298 KIGWT------ERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQ 351

Query: 389 CFTPDAVTFTSLI 401
              P+  T+T+LI
Sbjct: 352 GLAPNTNTYTTLI 364



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GL +      AR+ F  +   G+ P+  ++  L+ G C +G+ +E         L   + 
Sbjct: 158 GLRQRHHFAHARQAFDGM---GVRPDARSFRALVLGCCQEGRFEEAD------ALLAAMW 208

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411
             G   D  T  +++  FC+ GR      +FGR++     P+ V +T+ +  L    + +
Sbjct: 209 REGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVK 268

Query: 412 QV 413
           Q 
Sbjct: 269 QA 270


>gi|255660966|gb|ACU25652.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 376

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 153/315 (48%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +     DA  ++++I  LC E+ +  A ++   +   GC+ +V  YNTLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        + C P  ITY+T+I+GLCK        G +       L+K
Sbjct: 179 KFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKN----EMFGEAYNLVKELLDK 228

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                    +    + +  L+ GLC   K++ A +L+  +   G  P+V  +NILI GLC
Sbjct: 229 --------GLDPGVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLC 280

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G+M      +    L+  +N     P+L ++N L+  F K G + +  +I+ RIL + 
Sbjct: 281 SVGKM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALMIWARILRNG 334

Query: 390 FTPDAVTFTSLIKIL 404
             PD +++   +K L
Sbjct: 335 LEPDIISYNITLKGL 349



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 144/328 (43%), Gaps = 29/328 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K  + D  L + +     G   D + Y+ 
Sbjct: 76  DEVISIWELMKESGFVEDSIT-YGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+   + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A NL +E+ +         +P  ITYS ++ GLC   
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKG------LDPGVITYSMLMKGLC--- 245

Query: 251 GSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                L      +    N++    + P V++  +      LI GLC + K+++A  L+  
Sbjct: 246 -----LDHKVERALQLWNQVISKGFKPDVQMHNI------LIHGLCSVGKMQLALSLYFD 294

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + R    PN+V++N L+ G   DG +          +++ R+   GL PD+ +YNI +  
Sbjct: 295 MNRWKCAPNLVSHNTLMEGFYKDGDI------RNALMIWARILRNGLEPDIISYNITLKG 348

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVT 396
            C   R+S   +     +     P  +T
Sbjct: 349 LCSCNRISDAILFLHDAVTKKIVPTKIT 376



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 139/300 (46%), Gaps = 29/300 (9%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCF-ELWEMMGSEGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++  EMA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL-EMAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCL 284
             GV+   DA  YS +I+GLCKEA        +   + S LN M  +   P V V     
Sbjct: 125 --GVL---DAFAYSAMINGLCKEA--------NLDRALSVLNGMIKSGCKPNVHV----- 166

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  LI+GL   SK + A  +F+ +      P ++TYN LI GLC +    E       +
Sbjct: 167 -YNTLINGLAGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEA------Y 219

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L K L   GL P + TY++L+   C   +V     ++ +++   F PD      LI  L
Sbjct: 220 NLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGL 279



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/277 (18%), Positives = 100/277 (36%), Gaps = 60/277 (21%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV + +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     ++++E M     E G V   D+ITY                
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMK----ESGFV--EDSITYGI-------------- 99

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                                            L+ G CK   +  +  + +   + G +
Sbjct: 100 ---------------------------------LVHGFCKNGYIDKSLHVLEMAEQKGGV 126

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ +I GLC +  +D          +   +  +G  P+++ YN LIN      + 
Sbjct: 127 LDAFAYSAMINGLCKEANLDRA------LSVLNGMIKSGCKPNVHVYNTLINGLAGASKF 180

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                +F  +     +P  +T+ +LI  L  N  F +
Sbjct: 181 EDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGE 217


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 155/336 (46%), Gaps = 34/336 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           E   V+  M+  R  +P +T+FNI    L K    +    + + +   G  P+  TYN L
Sbjct: 183 EMQYVYKEMIKRRI-QPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTL 241

Query: 132 INCFCKMGRVSHGF---VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           I+  CK G     +    +L  +L +   P+ +TF +LI   C +  ++ A   F +++ 
Sbjct: 242 IDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQR 301

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + ++ TYN+LINGL   G    A+ L+++M       G+  +P+ +T++ +I+G CK
Sbjct: 302 QGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMV------GLGLKPNIVTFNALINGFCK 355

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIAREL 305
           +                 + +    F  +  Q L  N   F  +ID  CK   ++    L
Sbjct: 356 K---------------KMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFAL 400

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
             S+   G+ PNV TYN LI GLC +  +   K       L   + +  L  D+ TYNIL
Sbjct: 401 HNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKK------LLNEMENYELKADVVTYNIL 454

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           I  +CK G  S    + G +L     P+ VT+ +L+
Sbjct: 455 IGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLM 490



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 153/323 (47%), Gaps = 37/323 (11%)

Query: 88  PPVTSFNILF------GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           P + ++N L       G   K    D +L   K +    + P+  T+N LI+ FCK   V
Sbjct: 233 PNIVTYNTLIDGHCKKGSAGKMYRADAIL---KEMLANKICPNEITFNTLIDGFCKDENV 289

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                    + R    P+ VT+ SLI  L    ++ EA AL+ K+   G + ++ T+N L
Sbjct: 290 LAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNAL 349

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           ING C+      A  LF+++A    E  +V  P+AIT++T+ID  CK AG          
Sbjct: 350 INGFCKKKMIKEARKLFDDIA----EQDLV--PNAITFNTMIDAFCK-AGMME------- 395

Query: 262 ASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
             F+  N M     FP V        + CLI GLC+   ++ A++L   +    L  +VV
Sbjct: 396 EGFALHNSMLDEGIFPNVST------YNCLIAGLCRNQNVRAAKKLLNEMENYELKADVV 449

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TYNILI G C DG+  + +      LL + LN  G+ P+  TYN L++ +C  G + +  
Sbjct: 450 TYNILIGGWCKDGEPSKAEK-----LLGEMLN-VGVKPNHVTYNTLMDGYCMEGNLKAAL 503

Query: 380 VIFGRILPSCFTPDAVTFTSLIK 402
            +  ++       + VT+  LIK
Sbjct: 504 KVRTQMEKEGKRANVVTYNVLIK 526



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 145/315 (46%), Gaps = 27/315 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + S N L   L K      +  ++K +    + P+  T+NI IN  CK G+++    V+ 
Sbjct: 165 LNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIE 224

Query: 150 RILRSCFTPDAVTFTSLIKDLCAE---SRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            I    F+P+ VT+ +LI   C +    ++  A A+  ++       +  T+NTLI+G C
Sbjct: 225 DIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFC 284

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +  + + A N FEEM           +P+ +TY+++I+GL     S N      +A +  
Sbjct: 285 KDENVLAAKNAFEEMQRQG------LKPNIVTYNSLINGL-----SNNGKLDEAIALWDK 333

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +  +     +V        F  LI+G CK   +K AR+LF  +    L+PN +T+N +I 
Sbjct: 334 MVGLGLKPNIV-------TFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMID 386

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             C  G M+E       F L   +   G+FP++ TYN LI   C+   V +   +   + 
Sbjct: 387 AFCKAGMMEEG------FALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEME 440

Query: 387 PSCFTPDAVTFTSLI 401
                 D VT+  LI
Sbjct: 441 NYELKADVVTYNILI 455



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 126/279 (45%), Gaps = 24/279 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++N L   L+     D  ++L+ ++   GL P+  T+N LIN FCK   +     
Sbjct: 305 KPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARK 364

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   I      P+A+TF ++I   C    + E  AL   +   G   +V TYN LI GLC
Sbjct: 365 LFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLC 424

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R  +   A  L  EM N         + D +TY+ +I G CK+               S 
Sbjct: 425 RNQNVRAAKKLLNEMEN------YELKADVVTYNILIGGWCKDGEP------------SK 466

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             K+      V V+   + +  L+DG C    LK A ++   + + G   NVVTYN+LI+
Sbjct: 467 AEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIK 526

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           G C  G++++         L   +   GL P+  TY+++
Sbjct: 527 GFCKTGKLEDANR------LLNEMLEKGLNPNRTTYDVV 559



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 115/254 (45%), Gaps = 19/254 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ ++D M+ +   +P + +FN L     K K       LF  +    L P+  T+N 
Sbjct: 325 DEAIALWDKMVGL-GLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNT 383

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+ FCK G +  GF +   +L     P+  T+  LI  LC    +  A  L  ++  + 
Sbjct: 384 MIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYE 443

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV TYN LI G C+ G    A  L  EM N      V  +P+ +TY+T++DG C E 
Sbjct: 444 LKADVVTYNILIGGWCKDGEPSKAEKLLGEMLN------VGVKPNHVTYNTLMDGYCMEG 497

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                   +  A+     +M        V    + +  LI G CK  KL+ A  L   + 
Sbjct: 498 --------NLKAALKVRTQMEKEGKRANV----VTYNVLIKGFCKTGKLEDANRLLNEML 545

Query: 311 RAGLMPNVVTYNIL 324
             GL PN  TY+++
Sbjct: 546 EKGLNPNRTTYDVV 559



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 136/298 (45%), Gaps = 35/298 (11%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
            +F+R+   G      + N L++   K         V   +++    P+  TF   I  L
Sbjct: 151 EVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGL 210

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR---TGHTIVALNLFEEM-ANGNG 226
           C   ++ +A  +   ++ +G   ++ TYNTLI+G C+    G    A  + +EM AN   
Sbjct: 211 CKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANK-- 268

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
               +C P+ IT++T+IDG CK+         + +A+ +A  +M       + Q L  N 
Sbjct: 269 ----IC-PNEITFNTLIDGFCKDE--------NVLAAKNAFEEM-------QRQGLKPNI 308

Query: 287 L---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           +    LI+GL    KL  A  L+  +   GL PN+VT+N LI G C    + E +     
Sbjct: 309 VTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARK---- 364

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             LF  +    L P+  T+N +I+ FCK G +  GF +   +L     P+  T+  LI
Sbjct: 365 --LFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLI 420



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           R+Q     F   I+GLCK  KL  A ++ + +   G  PN+VTYN LI G C  G   + 
Sbjct: 195 RIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKM 254

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
              + +    K + +  + P+  T+N LI+ FCK   V +    F  +      P+ VT+
Sbjct: 255 YRADAI---LKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTY 311

Query: 398 TSLIKILEINS 408
            SLI  L  N 
Sbjct: 312 NSLINGLSNNG 322


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 138/306 (45%), Gaps = 49/306 (16%)

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           Y  +IN FCK G+V   F +L  +       D +  ++LI+ LC + RI EA   F  + 
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMG 61

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
              C  +V TYNT++NGLC+       L LF++M     E    CEPD I+YST+ID LC
Sbjct: 62  E-ECSPNVITYNTVVNGLCKANRIDEGLELFDDMEK-RYEASHGCEPDVISYSTVIDALC 119

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVR-VQCL--CLNFLCLIDGLCKISKLKIARE 304
           K                  ++K   YF  +R V C    + +  LIDGLCK+ ++  A  
Sbjct: 120 KA---------------QRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYS 164

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE---------------------------- 336
           L   L    ++P  + YN ++ G    G+  E                            
Sbjct: 165 LLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALW 224

Query: 337 -TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
                E     F+RL  +G  P++ TYN+ ++  CK G+V   + I   ++ S  TPD +
Sbjct: 225 KNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVI 284

Query: 396 TFTSLI 401
           T++S+I
Sbjct: 285 TYSSII 290



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 145/328 (44%), Gaps = 41/328 (12%)

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K    D    L   +   G+  D   ++ LI   C+ GR+         +   C +P+ +
Sbjct: 11  KAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEEC-SPNVI 69

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLR-----VFGCELDVFTYNTLINGLCRTGHTIVALN 216
           T+ +++  LC  +RI E   LF  +        GCE DV +Y+T+I+ LC+      A  
Sbjct: 70  TYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYE 129

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
            F+ M        V C P+ +TYS++IDGLCK                  +   A Y+  
Sbjct: 130 YFKRMR------AVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNA 183

Query: 277 V---------RVQCLCL--------------NFLCLIDGLCKISKLKIARELFQSLPRAG 313
           V           +CL L              +F  ++  L K  + + A + F+ L ++G
Sbjct: 184 VVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSG 243

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
             PNVVTYN+ + GLC  G++DE       + +   +  + + PD+ TY+ +I+ FCK G
Sbjct: 244 KKPNVVTYNVAVHGLCKAGKVDEA------YRILLEMVESKVTPDVITYSSIIDGFCKAG 297

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           R+     +F R++     P  VTF +L+
Sbjct: 298 RMDKADDVFTRMMVHECIPHPVTFMTLL 325



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 147/347 (42%), Gaps = 42/347 (12%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           +  FN +   L K    +     F+RL  +G  P+  TYN+ ++  CK G+V   + +L 
Sbjct: 213 IIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILL 272

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++ S  TPD +T++S+I   C   R+ +A  +FT++ V  C     T+ TL++G     
Sbjct: 273 EMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHK 332

Query: 210 HTIVALNLFEEMANG---------NGEFGVVC--------------------EPDAITYS 240
            +  A  + E+M N          N     VC                    +PDA TY+
Sbjct: 333 KSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYA 392

Query: 241 TIIDGLCKEAGSANFLGF-SCMASFSALNKMAFYFPLVRVQCL------CLNFLCLIDGL 293
            +I  LC+         F   M + + +   A    LV V C         + L  +  +
Sbjct: 393 PLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEI 452

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK  +   A E+ + +   G+ P+  TY  ++R LC   ++D      +    F+++ S 
Sbjct: 453 CKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVD------SAIAEFEKMASR 506

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           G  P L TY +LI   C        F IF  ++ + FTP A T  +L
Sbjct: 507 GCAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAGFTPQAQTMRTL 553



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 149/338 (44%), Gaps = 28/338 (8%)

Query: 71  NEALCVFDYMLNMRPS----RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           +E L +FD M     +     P V S++ +   L K +  D     FKR+   G  P+  
Sbjct: 85  DEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVV 144

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           TY+ LI+  CK+ RV   + +L ++      P A+ + +++     + +  E   L   +
Sbjct: 145 TYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHM 204

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           +  G  +++  +N +++ L +      A   FE +           +P+ +TY+  + GL
Sbjct: 205 KEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGK------KPNVVTYNVAVHGL 258

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
           CK AG  +        ++  L +M       +V    + +  +IDG CK  ++  A ++F
Sbjct: 259 CK-AGKVD-------EAYRILLEMVES----KVTPDVITYSSIIDGFCKAGRMDKADDVF 306

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +     +P+ VT+  L+ G        E K     F + + + + G  P L TYN+L+
Sbjct: 307 TRMMVHECIPHPVTFMTLLHGF------SEHKKSREAFRVHEDMVNAGFIPGLQTYNVLM 360

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +C C    V S   I+ ++      PDA T+  LI+ L
Sbjct: 361 DCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCL 398



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 119/246 (48%), Gaps = 20/246 (8%)

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
           +T++I   C   ++ +A  L  +++  G ++DV  ++TLI GLCR G    AL  F+ M 
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM- 60

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
                 G  C P+ ITY+T+++GLCK    AN +    +  F  + K   Y      +  
Sbjct: 61  ------GEECSPNVITYNTVVNGLCK----ANRIDEG-LELFDDMEKR--YEASHGCEPD 107

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
            +++  +ID LCK  ++  A E F+ +   G  PNVVTY+ LI GLC   ++DE      
Sbjct: 108 VISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEA----- 162

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            + L  +L    + P    YN ++N F + G+ S    +   +    F  + + F +++ 
Sbjct: 163 -YSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLH 221

Query: 403 ILEINS 408
            L  N 
Sbjct: 222 ALWKND 227



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 19/162 (11%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + +  +  +P   ++  L  CL + +  D        +    + P+    + L+   CK 
Sbjct: 377 HKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQ 436

Query: 139 GRVSHGFVVLGRILRSC-------------------FTPDAVTFTSLIKDLCAESRIMEA 179
           G V     VL  ++  C                     PD  T+ ++++ LC   R+  A
Sbjct: 437 GEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSA 496

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            A F K+   GC   + TY  LI   C       A  +FE M
Sbjct: 497 IAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAM 538



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 46/112 (41%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           + K    D  + + +++ L G+ PD  TY  ++   C + RV        ++      P 
Sbjct: 452 ICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPG 511

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            VT+T LI + C+     +A  +F  +   G      T  TL + L   G+ 
Sbjct: 512 LVTYTLLIGEACSADMADDAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGYQ 563


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 152/315 (48%), Gaps = 33/315 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
             S+N+L     K+   +  L +   L+ T + P+  TY+ ++   C  G++     VL 
Sbjct: 139 ANSYNVLINAYCKSGEIEEALRV---LDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLD 195

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R L+S   PD VT T LI   C ES + +A  LF ++R  GC+ DV TYN LI G C+ G
Sbjct: 196 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEG 255

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+   +++ +    +G  C+ D I+++ I+  LC              +    ++ 
Sbjct: 256 RLDEAIIFLKKLPS----YG--CQSDVISHNMILRSLC--------------SGGRWMDA 295

Query: 270 MAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           M     ++R  C    + F  LI+ LC+   L  A  + + +P+ G  PN  ++N LI+G
Sbjct: 296 MKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQG 355

Query: 328 LCNDGQMDET-KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            CN   +D   +H E +        S G +PD+ TYNIL+   CK G+V    VI  ++ 
Sbjct: 356 FCNRKGIDRAIEHLEIMV-------SRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLS 408

Query: 387 PSCFTPDAVTFTSLI 401
               +P  +++ ++I
Sbjct: 409 SKGCSPSLISYNTVI 423



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 160/386 (41%), Gaps = 66/386 (17%)

Query: 64  DITSITPN------------------EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKH 105
           D TS+ PN                  +A+ V D  L  +   P V +  +L     K   
Sbjct: 163 DHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSK-CYPDVVTCTVLIDATCKESG 221

Query: 106 YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
               + LF  +   G  PD  TYN+LI  FCK GR+    + L ++       D ++   
Sbjct: 222 VGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNM 281

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA--- 222
           +++ LC+  R M+A  L   +   GC   V T+N LIN LC+ G    ALN+ E M    
Sbjct: 282 ILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHG 341

Query: 223 ----------------NGNG--------EFGVV--CEPDAITYSTIIDGLCKEAGSANFL 256
                           N  G        E  V   C PD +TY+ ++  LCK+    +  
Sbjct: 342 HTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDD-- 399

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
               +   S L+       L+       ++  +IDGL K+ K ++A EL + +   GL P
Sbjct: 400 ---AVVILSQLSSKGCSPSLI-------SYNTVIDGLLKVGKAELAVELLEEMCYKGLKP 449

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           +++T   ++ GL  +G++ E   +      F  L   G+ P+ + YN ++   CK  + S
Sbjct: 450 DLITCTSVVGGLSREGKVHEAIKF------FHYLKGFGIKPNAFIYNSIMMGLCKAQQTS 503

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIK 402
                   ++ +   P   ++T+LIK
Sbjct: 504 LAIDFLVDMVANGCKPTEASYTTLIK 529



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 113/251 (45%), Gaps = 20/251 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FNIL   L +       L++ + +   G  P+  ++N LI  FC    +      
Sbjct: 309 PSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEH 368

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  ++ R C+ PD VT+  L+  LC + ++ +A  + ++L   GC   + +YNT+I+GL 
Sbjct: 369 LEIMVSRGCY-PDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLL 427

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G   +A+ L EEM           +PD IT ++++ GL +E      + F        
Sbjct: 428 KVGKAELAVELLEEMCYKG------LKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFG 481

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +   AF +  + +            GLCK  +  +A +    +   G  P   +Y  LI+
Sbjct: 482 IKPNAFIYNSIMM------------GLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIK 529

Query: 327 GLCNDGQMDET 337
           G+  +G  +E 
Sbjct: 530 GITYEGLAEEA 540



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 98/260 (37%), Gaps = 66/260 (25%)

Query: 132 INCFCKM---GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           I+  C++   G +  G   L  +      PD V  T+LI++ C   R   A  +   L  
Sbjct: 73  IHHLCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEE 132

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G  +D  +YN LIN  C++G    AL + +  +           P+A TY  +   LC 
Sbjct: 133 SGAVIDANSYNVLINAYCKSGEIEEALRVLDHTS---------VAPNAATYDAV---LCS 180

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                                                       LC   KLK A ++   
Sbjct: 181 --------------------------------------------LCDRGKLKQAMQVLDR 196

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
             ++   P+VVT  +LI   C +  + +         LF  +   G  PD+ TYN+LI  
Sbjct: 197 QLQSKCYPDVVTCTVLIDATCKESGVGQA------MKLFNEMRGKGCKPDVVTYNVLIKG 250

Query: 369 FCKIGRVSSGFVIFGRILPS 388
           FCK GR+    +IF + LPS
Sbjct: 251 FCKEGRLDEA-IIFLKKLPS 269



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 65/173 (37%), Gaps = 35/173 (20%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P + ++NIL   L K    D  + +  +L+  G  P   +YN +I+   K+G+   
Sbjct: 375 RGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAEL 434

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN---- 199
              +L  +      PD +T TS++  L  E ++ EA   F  L+ FG + + F YN    
Sbjct: 435 AVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMM 494

Query: 200 -------------------------------TLINGLCRTGHTIVALNLFEEM 221
                                          TLI G+   G    A  L  E+
Sbjct: 495 GLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNEL 547


>gi|255660962|gb|ACU25650.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 376

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 153/315 (48%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +     DA  ++++I  LC E+ +  A ++   +   GC+ +V  YNTLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        + C P  ITY+T+I+GLCK        G +       L+K
Sbjct: 179 KFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKN----EMFGEAYNLVKELLDK 228

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                    +    + +  L+ GLC   K++ A +L+  +   G  P+V  +NILI GLC
Sbjct: 229 --------GLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G++      +    L+  +N     P+L ++N L+  F K G + +  VI+ RIL + 
Sbjct: 281 SVGKI------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 390 FTPDAVTFTSLIKIL 404
             PD +++   +K L
Sbjct: 335 LEPDIISYNITLKGL 349



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 34/326 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K  + D  L + +     G   D + Y+ 
Sbjct: 76  DEVISIWELMKESGFVEDSIT-YGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+   + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A NL +E+ +         +P  ITYS ++ GLC + 
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKG------LDPGVITYSMLMKGLCLDH 248

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L       ++ +    F  P V++  +      LI GLC + K+++A  L+  + 
Sbjct: 249 KVERALQL-----WNQVTSKGFK-PDVQMHNI------LIHGLCSVGKIQLALSLYFDMN 296

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R    PN+V++N L+ G   DG +          +++ R+   GL PD+ +YNI +   C
Sbjct: 297 RWKCAPNLVSHNTLMEGFYKDGDI------RNALVIWARILRNGLEPDIISYNITLKGLC 350

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVT 396
              R+S   +         F  DAVT
Sbjct: 351 SCNRISDAIL---------FLHDAVT 367



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 148/319 (46%), Gaps = 36/319 (11%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCF-ELWEMMGSEGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++  EMA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL-EMAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-------SCMASFSALNKM-------AF 272
             GV+   DA  YS +I+GLCKEA     L          C  +    N +       + 
Sbjct: 125 --GVL---DAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASK 179

Query: 273 YFPLVRV-------QC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +   +RV        C    + +  LI+GLCK      A  L + L   GL P V+TY++
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSM 239

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++GLC D ++      E    L+ ++ S G  PD+  +NILI+  C +G++     ++ 
Sbjct: 240 LMKGLCLDHKV------ERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKIQLALSLYF 293

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +      P+ V+  +L++
Sbjct: 294 DMNRWKCAPNLVSHNTLME 312



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/277 (18%), Positives = 100/277 (36%), Gaps = 60/277 (21%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV + +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     ++++E M     E G V   D+ITY                
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMK----ESGFV--EDSITYGI-------------- 99

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                                            L+ G CK   +  +  + +   + G +
Sbjct: 100 ---------------------------------LVHGFCKNGYIDKSLHVLEMAEQKGGV 126

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ +I GLC +  +D          +   +  +G  P+++ YN LIN      + 
Sbjct: 127 LDAFAYSAMINGLCKEANLDRA------LSVLNGMIKSGCKPNVHVYNTLINGLAGASKF 180

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                +F  +     +P  +T+ +LI  L  N  F +
Sbjct: 181 EDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGE 217


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 154/358 (43%), Gaps = 59/358 (16%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           N +  +P + ++N++   L K    D  +  F+ + L    PD +TY+ L+N  CK  RV
Sbjct: 190 NSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRV 249

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                +L  +      P+ VTF  LI  L     +  AA L   + + GC  +  TYNTL
Sbjct: 250 DEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTL 309

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           I+GLC  G    AL+L E+M +        C P+ +TY TII+GL K+  + +  G   +
Sbjct: 310 IHGLCLKGKLDKALSLLEKMVSSK------CVPNQVTYGTIINGLVKQRRAED--GVHIL 361

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
            S     + A  +           +  LI GL K  K + A  L++ +   G  PNVV Y
Sbjct: 362 MSMEERGQKANEYI----------YSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVY 411

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY------------------- 362
              I GLC D + DE +       + + + S G  P+ +TY                   
Sbjct: 412 GAFIDGLCRDEKPDEAED------ILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILV 465

Query: 363 ----------------NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                           ++L+N  C+ GR+     ++  +L     PD V ++S+IK L
Sbjct: 466 WKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGL 523



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 160/351 (45%), Gaps = 38/351 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + D M        PVT FN+L   L+K         L   + L G  P+  TYN 
Sbjct: 250 DEAVFLLDEMQAEGCLPNPVT-FNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNT 308

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C  G++     +L +++ S   P+ VT+ ++I  L  + R  +   +   +   G
Sbjct: 309 LIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERG 368

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + + + Y++LI+GL + G +  A+ L++EMA         C+P+ + Y   IDGLC++ 
Sbjct: 369 QKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKG------CKPNVVVYGAFIDGLCRDE 422

Query: 251 G------------SANFLG-----FSCMASF---SALNKMAFYFPLVRVQCLCLNFLC-- 288
                        S  FL       S M  F       K    +  +  Q +  N +C  
Sbjct: 423 KPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCS 482

Query: 289 -LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L++GLC+  +L+ A  ++  +   GL P+VV Y+ +I+GLC+ G +D+         LF
Sbjct: 483 VLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKG------LKLF 536

Query: 348 KRLN--STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
             +        PD+ TYNIL N  C+   ++    +   +L     PD++T
Sbjct: 537 YEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLT 587



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 124/300 (41%), Gaps = 31/300 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL + + M++ +   P   ++  +   L K +  +  + +   +   G   + Y Y+ 
Sbjct: 320 DKALSLLEKMVSSK-CVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSS 378

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+   K G+  +   +   +      P+ V + + I  LC + +  EA  +  ++   G
Sbjct: 379 LISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKG 438

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              + FTY++L+ G  + G +  A+ +++EM + +    VVC       S +++GLC+  
Sbjct: 439 FLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVC------CSVLLNGLCESG 492

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL- 309
                L          L       P V      + +  +I GLC +  +    +LF  + 
Sbjct: 493 RLREALTVWTHMLGEGLK------PDV------VAYSSMIKGLCDVGSVDKGLKLFYEMQ 540

Query: 310 ---PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
              P++   P+VVTYNIL   LC    +           L   +   G  PD  T NI +
Sbjct: 541 CQEPKS--RPDVVTYNILFNALCRQDNLTR------AIDLLNSMLDEGCDPDSLTCNIFL 592



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  PN++TYN++I+ LC  GQ+D           F+ +      PD++TY+ L+N  CK 
Sbjct: 193 GFQPNLLTYNLIIKALCKLGQIDRAVD------TFREMPLKNCNPDVFTYSTLMNGLCKE 246

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
            RV     +   +      P+ VTF  LI  L  N    + A
Sbjct: 247 RRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAA 288



 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 23/179 (12%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT--GLFPDRYTYN 129
           EAL V+ +ML     +P V +++ +   L      D  L LF  +        PD  TYN
Sbjct: 496 EALTVWTHMLG-EGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYN 554

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           IL N  C+   ++    +L  +L     PD++T    ++ L       +   LF      
Sbjct: 555 ILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLF------ 608

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
                    + L+  L +    + AL + EEM            P+  T+S +I   CK
Sbjct: 609 --------LDELVVRLLKRERKLSALRIVEEM------LLRFLPPEPSTWSRVIQRTCK 653


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 158/331 (47%), Gaps = 27/331 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ VF++M+ +   RP + +  +L   LAK +  D V  ++K++   G+  + + YN+
Sbjct: 147 QEAIQVFEHMM-VNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNV 205

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G V     +L  +   C  PD  T+ +LI   C +    EA ++  ++   G
Sbjct: 206 LIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREG 265

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D+ TYN+LI+G C+ G    A+ LF+E+ +          P+ +TY+T+IDG C+  
Sbjct: 266 IKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDAT--------PNHVTYTTLIDGYCRLN 317

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L          L      +P V      + +  ++  LC+I +++ A +L   + 
Sbjct: 318 DLDQALRLREEMEAQGL------YPTV------VTYNSILRKLCEIGRIRDANKLLNEMS 365

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
              + P+ VT N LI   C  G M      ++   +  R+   GL  D +TY  LI+ FC
Sbjct: 366 EKKIEPDNVTCNTLINAYCKIGDM------KSALKVKNRMVEAGLKLDQFTYKALIHGFC 419

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           KI  +     +   +L + F+P   T++ L+
Sbjct: 420 KIREMDGAKELLLSMLDAGFSPSYCTYSWLV 450



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 156/394 (39%), Gaps = 71/394 (18%)

Query: 65  ITSITPNEALCVFDYMLNMRPS-RPPVTSFNILFGCLAKTKHYDTVLSLFKRLN------ 117
           + S  P  +  +F ++ +  P+ +  + S   +   L K KH  T  SL +++       
Sbjct: 52  LHSQGPCLSWALFKWIESSIPNYKHSLQSSWTMIHILTKFKHLKTAQSLLEKIAYRDFLS 111

Query: 118 ----LTGLF-----PD--RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
               L+ L      PD   + ++ L+  +           V   ++ + F P     T L
Sbjct: 112 TQSVLSALVRLHDDPDINSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVL 171

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG-- 224
           +  L  +        ++ K+   G E ++  YN LI+  C++G    A NL  EM +   
Sbjct: 172 LNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCV 231

Query: 225 -------NGEFGVVC--------------------EPDAITYSTIIDGLCKEAGSANFLG 257
                  N    + C                    +PD +TY+++I G CKE        
Sbjct: 232 FPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEG------- 284

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
                       M  +  +       + +  LIDG C+++ L  A  L + +   GL P 
Sbjct: 285 -------RMREAMRLFKEIRDATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPT 337

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           VVTYN ++R LC  G++ +         L   ++   + PD  T N LIN +CKIG + S
Sbjct: 338 VVTYNSILRKLCEIGRIRDANK------LLNEMSEKKIEPDNVTCNTLINAYCKIGDMKS 391

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI----KILEIN 407
              +  R++ +    D  T+ +LI    KI E++
Sbjct: 392 ALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMD 425



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 9/174 (5%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +   L +         L   ++   + PD  T N LIN +CK+G +     V
Sbjct: 336 PTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKV 395

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R++ +    D  T+ +LI   C    +  A  L   +   G      TY+ L++G C 
Sbjct: 396 KNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCN 455

Query: 208 TGHTIVALNLFEEMANG---------NGEFGVVCEPDAITYSTIIDGLCKEAGS 252
             +    L L +E                    C+ + + Y+  I  L +E G+
Sbjct: 456 QQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQVDYAKKIFSLMQEKGT 509


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 154/358 (43%), Gaps = 59/358 (16%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           N +  +P + ++N++   L K    D  +  F+ + L    PD +TY+ L+N  CK  RV
Sbjct: 166 NSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRV 225

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                +L  +      P+ VTF  LI  L     +  AA L   + + GC  +  TYNTL
Sbjct: 226 DEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTL 285

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           I+GLC  G    AL+L E+M +        C P+ +TY TII+GL K+  + +  G   +
Sbjct: 286 IHGLCLKGKLDKALSLLEKMVSSK------CVPNQVTYGTIINGLVKQRRAED--GVHIL 337

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
            S     + A  +           +  LI GL K  K + A  L++ +   G  PNVV Y
Sbjct: 338 MSMEERGQKANEYI----------YSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVY 387

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY------------------- 362
              I GLC D + DE +       + + + S G  P+ +TY                   
Sbjct: 388 GAFIDGLCRDEKPDEAED------ILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILV 441

Query: 363 ----------------NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                           ++L+N  C+ GR+     ++  +L     PD V ++S+IK L
Sbjct: 442 WKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGL 499



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 160/351 (45%), Gaps = 38/351 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + D M        PVT FN+L   L+K         L   + L G  P+  TYN 
Sbjct: 226 DEAVFLLDEMQAEGCLPNPVT-FNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNT 284

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C  G++     +L +++ S   P+ VT+ ++I  L  + R  +   +   +   G
Sbjct: 285 LIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERG 344

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + + + Y++LI+GL + G +  A+ L++EMA         C+P+ + Y   IDGLC++ 
Sbjct: 345 QKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKG------CKPNVVVYGAFIDGLCRDE 398

Query: 251 G------------SANFLG-----FSCMASF---SALNKMAFYFPLVRVQCLCLNFLC-- 288
                        S  FL       S M  F       K    +  +  Q +  N +C  
Sbjct: 399 KPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCS 458

Query: 289 -LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L++GLC+  +L+ A  ++  +   GL P+VV Y+ +I+GLC+ G +D+         LF
Sbjct: 459 VLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKG------LKLF 512

Query: 348 KRLN--STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
             +        PD+ TYNIL N  C+   ++    +   +L     PD++T
Sbjct: 513 YEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLT 563



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/300 (21%), Positives = 124/300 (41%), Gaps = 31/300 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL + + M++ +   P   ++  +   L K +  +  + +   +   G   + Y Y+ 
Sbjct: 296 DKALSLLEKMVSSK-CVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSS 354

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+   K G+  +   +   +      P+ V + + I  LC + +  EA  +  ++   G
Sbjct: 355 LISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKG 414

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              + FTY++L+ G  + G +  A+ +++EM + +    VVC       S +++GLC+  
Sbjct: 415 FLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVC------CSVLLNGLCESG 468

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL- 309
                L          L       P V      + +  +I GLC +  +    +LF  + 
Sbjct: 469 RLREALTVWTHMLGEGLK------PDV------VAYSSMIKGLCDVGSVDKGLKLFYEMQ 516

Query: 310 ---PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
              P++   P+VVTYNIL   LC    +           L   +   G  PD  T NI +
Sbjct: 517 CQEPKS--RPDVVTYNILFNALCRQDNLTRA------IDLLNSMLDEGCDPDSLTCNIFL 568



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  PN++TYN++I+ LC  GQ+D           F+ +      PD++TY+ L+N  CK 
Sbjct: 169 GFQPNLLTYNLIIKALCKLGQIDRAVD------TFREMPLKNCNPDVFTYSTLMNGLCKE 222

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
            RV     +   +      P+ VTF  LI  L  N    + A
Sbjct: 223 RRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAA 264



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 23/179 (12%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT--GLFPDRYTYN 129
           EAL V+ +ML     +P V +++ +   L      D  L LF  +        PD  TYN
Sbjct: 472 EALTVWTHMLG-EGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYN 530

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           IL N  C+   ++    +L  +L     PD++T    ++ L       +   LF      
Sbjct: 531 ILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLF------ 584

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
                    + L+  L +    + AL + EEM            P+  T+S +I   CK
Sbjct: 585 --------LDELVVRLLKRERKLSALRIVEEM------LLRFLPPEPSTWSRVIQRTCK 629


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 157/323 (48%), Gaps = 34/323 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V + N L   L K   +D +  L+  +    LFP   TYN+L++  C+ G V     +
Sbjct: 149 PAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSL 208

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +++    P  V +T+LI  LC+ES++MEA ++F +++  G   +++TYN L++G C+
Sbjct: 209 ISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCK 268

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
           T +   AL+L++ M +         +P+ +T+  +ID LCK  E  +A    F  MA F 
Sbjct: 269 TANVKQALHLYQGMLDDG------LQPNVVTFGILIDALCKVRELLAARRF-FVQMAKFG 321

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            +       P V V      F  LIDG  K      A +L   + +  + P+V TY+ILI
Sbjct: 322 VV-------PNVVV------FNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILI 368

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI---- 381
           +  C  G ++E         + KR+   G+  +   YN LI+ +CK G +     I    
Sbjct: 369 KNACRLGTVEEADD------ILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKAT 422

Query: 382 --FGRILPSCFTPDAVTFTSLIK 402
             F  +  +   PDA+ +  +++
Sbjct: 423 KFFSDMRRNGLRPDALAYAVMLQ 445



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 143/326 (43%), Gaps = 27/326 (8%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VF+ +  +R S+   + F +L    ++    D  L ++ ++   G FP     N L+N  
Sbjct: 105 VFNALSQLRGSKFNPSVFGVLIIAFSEVGLVDEALRVYLKV---GAFPAVQACNALLNGL 161

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            K       + +   ++     P  VT+  L+   C +  ++ A +L +++   G E  V
Sbjct: 162 LKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTV 221

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             Y TLI+GLC     + A ++F +M + +G F     P+  TY+ ++DG CK A     
Sbjct: 222 VIYTTLIHGLCSESKLMEAESMFRQMKD-SGVF-----PNLYTYNVLMDGYCKTANVKQA 275

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L          L            Q   + F  LID LCK+ +L  AR  F  + + G++
Sbjct: 276 LHLYQGMLDDGL------------QPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVV 323

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           PNVV +N LI G    G   E         L   +    + PD++TY+ILI   C++G V
Sbjct: 324 PNVVVFNSLIDGYSKAGNCSEATD------LLLEMEKFKISPDVFTYSILIKNACRLGTV 377

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
                I  R+       ++V + SLI
Sbjct: 378 EEADDILKRMEKEGVPANSVVYNSLI 403



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 145/352 (41%), Gaps = 53/352 (15%)

Query: 60  SGEGDITSI-----TPNEALCVFDYMLNMRPSRP--PVTSFNILFGCLAKTKHYDTVLSL 112
           S   D+T+I     TP +AL  F  +L   P+ P   +  ++ +   L   K Y T   L
Sbjct: 25  SPPSDLTTIILHSKTPEQALDTFTSVLKQNPNNPTKKLHLYSAVIHYLTGAKVYPTARCL 84

Query: 113 FKRLNLTGLFPDRYTYNILINCFCKMGRV-SHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
            K L  T L              C   RV S  F  L ++  S F P    F  LI    
Sbjct: 85  TKDLIQTLLQS------------CTPRRVNSLVFNALSQLRGSKFNPS--VFGVLIIAFS 130

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
               + EA  ++ K+  F     V   N L+NGL +     +   L+  M +        
Sbjct: 131 EVGLVDEALRVYLKVGAFPA---VQACNALLNGLLKKSSFDIMWELYNNMVSRR------ 181

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR--VQCLCLNFLCL 289
             P  +TY+ ++D  C++                 L   +    +V+  ++   + +  L
Sbjct: 182 LFPTVVTYNVLVDACCRQG--------------DVLRAKSLISEMVKKGIEPTVVIYTTL 227

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           I GLC  SKL  A  +F+ +  +G+ PN+ TYN+L+ G C    + +  H      L++ 
Sbjct: 228 IHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALH------LYQG 281

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +   GL P++ T+ ILI+  CK+  + +    F ++      P+ V F SLI
Sbjct: 282 MLDDGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLI 333



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 13/133 (9%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+D  C+   +  A+ L   + + G+ P VV Y  LI GLC++ ++ E +       +F+
Sbjct: 192 LVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAES------MFR 245

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI------- 401
           ++  +G+FP+LYTYN+L++ +CK   V     ++  +L     P+ VTF  LI       
Sbjct: 246 QMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVR 305

Query: 402 KILEINSFFRQVA 414
           ++L    FF Q+A
Sbjct: 306 ELLAARRFFVQMA 318



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 1/174 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL ++  ML+    +P V +F IL   L K +        F ++   G+ P+   +N L
Sbjct: 274 QALHLYQGMLD-DGLQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSL 332

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ + K G  S    +L  + +   +PD  T++ LIK+ C    + EA  +  ++   G 
Sbjct: 333 IDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGV 392

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
             +   YN+LI+G C+ G+   AL +F+     +        PDA+ Y+ ++ G
Sbjct: 393 PANSVVYNSLIDGYCKEGNMEKALEIFKATKFFSDMRRNGLRPDALAYAVMLQG 446



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 24/154 (15%)

Query: 278 RVQCLCLNFLCLIDG-----------LCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           RV  L  N L  + G           +   S++ +  E  +   + G  P V   N L+ 
Sbjct: 100 RVNSLVFNALSQLRGSKFNPSVFGVLIIAFSEVGLVDEALRVYLKVGAFPAVQACNALLN 159

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL      D       ++ L+  + S  LFP + TYN+L++  C+ G V     +   ++
Sbjct: 160 GLLKKSSFD------IMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMV 213

Query: 387 PSCFTPDAVTFTSLI-------KILEINSFFRQV 413
                P  V +T+LI       K++E  S FRQ+
Sbjct: 214 KKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQM 247


>gi|255660992|gb|ACU25665.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 376

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 154/325 (47%), Gaps = 25/325 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  + +R  V+SFNI+   L      + V+S+++ +  +G   D  TY IL++ FCK G
Sbjct: 50  MMGSKGNRS-VSSFNIMMRGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGFCKNG 108

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            ++    VL    +     DA  ++++I  LC E+ + +A ++   +   GC+ +   YN
Sbjct: 109 YINKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNGMIKSGCKPNAHVYN 168

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TL+NGL        A+ +F EM        V C P  ITY+T+I+GLCK           
Sbjct: 169 TLVNGLVGVSKFEDAIRVFREMGT------VHCSPTIITYNTLINGLCKNEMFGEAYNLV 222

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
                  LN     + +            L+ GLC   K++ A +L+  +   G  P+V 
Sbjct: 223 KELLDKGLNPGVITYSM------------LMKGLCLDHKVERALQLWNQVTSKGFKPDVQ 270

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
             NILI GLC+ G+M      +    L+  +N     P+L ++N L+  F K G + +  
Sbjct: 271 MLNILIHGLCSVGKM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
           VI+ RIL +   PD +++   +K L
Sbjct: 325 VIWARILRNGLEPDIISYNITLKGL 349



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 143/326 (43%), Gaps = 34/326 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NE + +++ M         +T + IL     K  + +  L + +     G   D + Y+ 
Sbjct: 76  NEVISIWELMKKSGFVEDSIT-YGILVHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+A  + +L+  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDKAVSVLNGMIKSGCKPNAHVYNTLVNGLVGVSKFEDAIRVFREMGTVH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A NL +E+ +          P  ITYS ++ GLC   
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKG------LNPGVITYSMLMKGLC--- 245

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L      +    N++        VQ L +    LI GLC + K+++A  L+  + 
Sbjct: 246 -----LDHKVERALQLWNQVTSKGFKPDVQMLNI----LIHGLCSVGKMQLALSLYFDMN 296

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R    PN+V++N L+ G   DG +          +++ R+   GL PD+ +YNI +   C
Sbjct: 297 RWKCAPNLVSHNTLMEGFYKDGDI------RNALVIWARILRNGLEPDIISYNITLKGLC 350

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVT 396
              R+S   +         F  DAVT
Sbjct: 351 SCNRISDAIL---------FLHDAVT 367



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 138/297 (46%), Gaps = 29/297 (9%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D+   ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DSAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCF-ELWEMMGSKGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++  EMA   G
Sbjct: 66  MRGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGFCKNGYINKSLHVL-EMAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CL 284
             GV+   DA  YS +I+GLCKEA        +   + S LN M      ++  C     
Sbjct: 125 --GVL---DAFAYSAMINGLCKEA--------NLDKAVSVLNGM------IKSGCKPNAH 165

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  L++GL  +SK + A  +F+ +      P ++TYN LI GLC +    E       +
Sbjct: 166 VYNTLVNGLVGVSKFEDAIRVFREMGTVHCSPTIITYNTLINGLCKNEMFGEA------Y 219

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            L K L   GL P + TY++L+   C   +V     ++ ++    F PD      LI
Sbjct: 220 NLVKELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMLNILI 276



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 50/277 (18%), Positives = 100/277 (36%), Gaps = 60/277 (21%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV + +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDSAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSKG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     ++++E M       G V   D+ITY                
Sbjct: 60  SSFNIMMRGLFDNGKVNEVISIWELMKKS----GFV--EDSITYGI-------------- 99

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                                            L+ G CK   +  +  + +   + G +
Sbjct: 100 ---------------------------------LVHGFCKNGYINKSLHVLEMAEQKGGV 126

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ +I GLC +  +D+         +   +  +G  P+ + YN L+N    + + 
Sbjct: 127 LDAFAYSAMINGLCKEANLDKA------VSVLNGMIKSGCKPNAHVYNTLVNGLVGVSKF 180

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                +F  +     +P  +T+ +LI  L  N  F +
Sbjct: 181 EDAIRVFREMGTVHCSPTIITYNTLINGLCKNEMFGE 217


>gi|255661000|gb|ACU25669.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 376

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 148/315 (46%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L      D V+S+++ +  +    D  TY IL++ FCK G ++    VL 
Sbjct: 59  VSSFNIMMRGLFDXGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGXINKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +     DA  ++++I  LC E+ + +A ++   +   GC+ +   YNTLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        V C P  ITY+T+I+GLCK                  LN 
Sbjct: 179 KFEDAIRVFREMGT------VHCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGLNP 232

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
               + +            L+ GLC   K++ A +L+  +   G  P+V  +NILI GLC
Sbjct: 233 SVITYSM------------LMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLC 280

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G+       +    L+  +N     P+L T+N L+  F K G + +  VI+ R+L + 
Sbjct: 281 SVGKT------QRALSLYFXMNRWKCAPNLVTHNTLMEGFYKDGDIRNALVIWARVLRNG 334

Query: 390 FTPDAVTFTSLIKIL 404
             PD +++   +K L
Sbjct: 335 LEPDIISYNITLKGL 349



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 142/328 (43%), Gaps = 29/328 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K    +  L + +     G   D + Y+ 
Sbjct: 76  DEVISIWELMKKSDFVEDSIT-YGILVHGFCKNGXINKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+A  + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTVH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A +L +EM     E G+   P  ITYS ++ GLC   
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYDLVKEML----EKGL--NPSVITYSMLMKGLC--- 245

Query: 251 GSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                L      +    N++    + P V++  +      LI GLC + K + A  L+  
Sbjct: 246 -----LDHKVERALQLWNQVISKGFKPDVQMHNI------LIHGLCSVGKTQRALSLYFX 294

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + R    PN+VT+N L+ G   DG +          +++ R+   GL PD+ +YNI +  
Sbjct: 295 MNRWKCAPNLVTHNTLMEGFYKDGDI------RNALVIWARVLRNGLEPDIISYNITLKG 348

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVT 396
            C   R+    +     +     P  +T
Sbjct: 349 LCSCNRICDAILFLHDSVRKKIVPTKIT 376



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 144/332 (43%), Gaps = 62/332 (18%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKM---------------------------- 138
           D    ++K +  + + PD   YN ++N + ++                            
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNTMLNGYFRVAKIKDCFELWEMMGNEGNRSVSSFNIMM 66

Query: 139 ------GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
                 G+V     +   + +S F  D++T+  L+   C    I ++  +       G  
Sbjct: 67  RGLFDXGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGXINKSLHVLEMAEQKGGV 126

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           LD F Y+ +INGLC+  +   A+++  +M          C+P+A  Y+T+I+GL    G+
Sbjct: 127 LDAFAYSAMINGLCKEANLDKAVSVLNDMIKSG------CKPNAHVYNTLINGL---VGA 177

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISKLKIARELFQSLP 310
           + F            + +  +  +  V C    + +  LI+GLCK      A +L + + 
Sbjct: 178 SKF-----------EDAIRVFREMGTVHCSPTIITYNTLINGLCKNEMFGEAYDLVKEML 226

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL P+V+TY++L++GLC D ++      E    L+ ++ S G  PD+  +NILI+  C
Sbjct: 227 EKGLNPSVITYSMLMKGLCLDHKV------ERALQLWNQVISKGFKPDVQMHNILIHGLC 280

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            +G+      ++  +      P+ VT  +L++
Sbjct: 281 SVGKTQRALSLYFXMNRWKCAPNLVTHNTLME 312



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 16/207 (7%)

Query: 49  LEQFLKERCKSSGE-------GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA 101
           L   +K  CK +         G + +    +A+ VF  M  +  S P + ++N L   L 
Sbjct: 152 LNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTVHCS-PTIITYNTLINGLC 210

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K + +     L K +   GL P   TY++L+   C   +V     +  +++   F PD  
Sbjct: 211 KNEMFGEAYDLVKEMLEKGLNPSVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQ 270

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE- 220
               LI  LC+  +   A +L+  +  + C  ++ T+NTL+ G  + G    AL ++   
Sbjct: 271 MHNILIHGLCSVGKTQRALSLYFXMNRWKCAPNLVTHNTLMEGFYKDGDIRNALVIWARV 330

Query: 221 MANGNGEFGVVCEPDAITYSTIIDGLC 247
           + NG        EPD I+Y+  + GLC
Sbjct: 331 LRNG-------LEPDIISYNITLKGLC 350



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/243 (19%), Positives = 93/243 (38%), Gaps = 27/243 (11%)

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN-GNGEFG 229
           C    I  A  ++ ++       D   YNT++NG  R         L+E M N GN    
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNTMLNGYFRVAKIKDCFELWEMMGNEGNRSVS 60

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCL 289
                   +++ ++ GL  + G  +      ++ +  + K  F           + +  L
Sbjct: 61  --------SFNIMMRGLF-DXGKVD----EVISIWELMKKSDFVED-------SITYGIL 100

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           + G CK   +  +  + +   + G + +   Y+ +I GLC +  +D+         +   
Sbjct: 101 VHGFCKNGXINKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDKA------VSVLND 154

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409
           +  +G  P+ + YN LIN      +      +F  +     +P  +T+ +LI  L  N  
Sbjct: 155 MIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTVHCSPTIITYNTLINGLCKNEM 214

Query: 410 FRQ 412
           F +
Sbjct: 215 FGE 217


>gi|255660998|gb|ACU25668.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 376

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 148/315 (46%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L      D V+S+++ +  +    D  TY IL++ FCK G ++    VL 
Sbjct: 59  VSSFNIMMRGLFDKGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGYINKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +     DA  ++++I  LC E+ + +A ++   +   GC+ +   YNTLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        V C P  ITY+T+I+GLCK                  LN 
Sbjct: 179 KFEDAIRVFREMGT------VRCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGLNP 232

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
               + +            L+ GLC   K++ A +L+  +   G  P+V  +NILI GLC
Sbjct: 233 SVITYSM------------LMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLC 280

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G+       +    L+  +N     P+L T+N L+  F K G + +  VI+ R+L + 
Sbjct: 281 SVGKT------QLALSLYJDMNRWKCAPNLVTHNTLMEGFYKDGDIRNALVIWARVLRNG 334

Query: 390 FTPDAVTFTSLIKIL 404
             PD +++   +K L
Sbjct: 335 LEPDIISYNITLKGL 349



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 144/328 (43%), Gaps = 29/328 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K  + +  L + +     G   D + Y+ 
Sbjct: 76  DEVISIWELMKKSDFVEDSIT-YGILVHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+A  + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTVR 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A +L +EM     E G+   P  ITYS ++ GLC   
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYDLVKEML----EKGL--NPSVITYSMLMKGLC--- 245

Query: 251 GSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                L      +    N++    + P V++  +      LI GLC + K ++A  L+  
Sbjct: 246 -----LDHKVERALQLWNQVISKGFKPDVQMHNI------LIHGLCSVGKTQLALSLYJD 294

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + R    PN+VT+N L+ G   DG +          +++ R+   GL PD+ +YNI +  
Sbjct: 295 MNRWKCAPNLVTHNTLMEGFYKDGDI------RNALVIWARVLRNGLEPDIISYNITLKG 348

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVT 396
            C   R+    +     +     P  +T
Sbjct: 349 LCSCNRICDAILFLHDAVRKKIVPTKIT 376



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 143/330 (43%), Gaps = 58/330 (17%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKM---------------------------- 138
           D    ++K +  + + PD   YN ++N + ++                            
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGNEGNRSVSSFNIMM 66

Query: 139 ------GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
                 G+V     +   + +S F  D++T+  L+   C    I ++  +       G  
Sbjct: 67  RGLFDKGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGYINKSLHVLEMAEQKGGV 126

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           LD F Y+ +INGLC+  +   A+++  +M          C+P+A  Y+T+I+GL    G+
Sbjct: 127 LDAFAYSAMINGLCKEANLDKAVSVLNDMIKSG------CKPNAHVYNTLINGL---VGA 177

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
           + F       +     +M      VR     + +  LI+GLCK      A +L + +   
Sbjct: 178 SKF-----EDAIRVFREMG----TVRCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEK 228

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           GL P+V+TY++L++GLC D ++      E    L+ ++ S G  PD+  +NILI+  C +
Sbjct: 229 GLNPSVITYSMLMKGLCLDHKV------ERALQLWNQVISKGFKPDVQMHNILIHGLCSV 282

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           G+      ++  +      P+ VT  +L++
Sbjct: 283 GKTQLALSLYJDMNRWKCAPNLVTHNTLME 312



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 16/207 (7%)

Query: 49  LEQFLKERCKSSGE-------GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA 101
           L   +K  CK +         G + +    +A+ VF  M  +R S P + ++N L   L 
Sbjct: 152 LNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTVRCS-PTIITYNTLINGLC 210

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K + +     L K +   GL P   TY++L+   C   +V     +  +++   F PD  
Sbjct: 211 KNEMFGEAYDLVKEMLEKGLNPSVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQ 270

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE- 220
               LI  LC+  +   A +L+  +  + C  ++ T+NTL+ G  + G    AL ++   
Sbjct: 271 MHNILIHGLCSVGKTQLALSLYJDMNRWKCAPNLVTHNTLMEGFYKDGDIRNALVIWARV 330

Query: 221 MANGNGEFGVVCEPDAITYSTIIDGLC 247
           + NG        EPD I+Y+  + GLC
Sbjct: 331 LRNG-------LEPDIISYNITLKGLC 350



 Score = 44.7 bits (104), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 49/277 (17%), Positives = 98/277 (35%), Gaps = 60/277 (21%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV + +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGNEG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     ++++E M   +         D+ITY                
Sbjct: 60  SSFNIMMRGLFDKGKVDEVISIWELMKKSD------FVEDSITYGI-------------- 99

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                                            L+ G CK   +  +  + +   + G +
Sbjct: 100 ---------------------------------LVHGFCKNGYINKSLHVLEMAEQKGGV 126

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ +I GLC +  +D+         +   +  +G  P+ + YN LIN      + 
Sbjct: 127 LDAFAYSAMINGLCKEANLDKA------VSVLNDMIKSGCKPNAHVYNTLINGLVGASKF 180

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                +F  +     +P  +T+ +LI  L  N  F +
Sbjct: 181 EDAIRVFREMGTVRCSPTIITYNTLINGLCKNEMFGE 217


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 162/361 (44%), Gaps = 52/361 (14%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  VF+ ML  R   P + SF+ + G  ++       L+ F+++   GL PD   Y IL
Sbjct: 347 EAERVFNEMLQ-RGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTIL 405

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN +C+   VS    +   ++      D VT+ +L+  LC    + +A  LF ++   G 
Sbjct: 406 INGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGV 465

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--E 249
             D +T  TLI+G C+ G+   AL+LFE M   +       +PD +TY+T++DG CK  E
Sbjct: 466 FPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRS------LKPDVVTYNTLMDGFCKVGE 519

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              A  L +  ++           FP        ++F  LI+G C +  +  A  L+  +
Sbjct: 520 MEKAKELWYDMISR--------EIFPSY------ISFSILINGFCSLGLVSEAFRLWDEM 565

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDET-----------------------------KHY 340
              G+ P +VT N +I+G    G + +                              +++
Sbjct: 566 KEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENF 625

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           +  F L   +   GL P+L TYN ++  F + GR+    ++  +++     PD  T+TSL
Sbjct: 626 DRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSL 685

Query: 401 I 401
           I
Sbjct: 686 I 686



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 150/334 (44%), Gaps = 29/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + D M   +  +P + ++N L   L K   Y+    +   +   GL P+  T+N 
Sbjct: 276 SEAFGLVDCMAG-KGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNP 334

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++   C+   V     V   +L+    PD ++F+S++        +  A A F K++  G
Sbjct: 335 MLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVG 394

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--K 248
              D   Y  LING CR      AL +  EM     E G  C  D +TY+T+++GLC  K
Sbjct: 395 LVPDTVIYTILINGYCRNDDVSGALKMRNEMV----ERG--CVMDVVTYNTLLNGLCRGK 448

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
               A+ L F  M          FY               LI G CK   +  A  LF++
Sbjct: 449 MLDDADEL-FKEMVERGVFPD--FY-----------TLTTLIHGYCKDGNMTKALSLFET 494

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +    L P+VVTYN L+ G C  G+M++ K       L+  + S  +FP   +++ILIN 
Sbjct: 495 MTLRSLKPDVVTYNTLMDGFCKVGEMEKAKE------LWYDMISREIFPSYISFSILING 548

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           FC +G VS  F ++  +      P  VT  ++IK
Sbjct: 549 FCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIK 582



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 148/335 (44%), Gaps = 35/335 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + + N L G + K    D    +++    +G   + YT NI++N  CK G++ +  V L 
Sbjct: 189 INACNALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLS 248

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +       D VT+ +L+   C    + EA  L   +   G +  +FTYN LINGLC+ G
Sbjct: 249 EMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEG 308

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA---------------- 253
               A  + +EM       GV   P+A T++ ++   C++                    
Sbjct: 309 SYERAKRVLDEM------LGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVP 362

Query: 254 NFLGFSCMASF----SALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELF 306
           + + FS +         L +   YF  ++   L  +   +  LI+G C+   +  A ++ 
Sbjct: 363 DLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMR 422

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G + +VVTYN L+ GLC    +D+         LFK +   G+FPD YT   LI
Sbjct: 423 NEMVERGCVMDVVTYNTLLNGLCRGKMLDDADE------LFKEMVERGVFPDFYTLTTLI 476

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + +CK G ++    +F  +      PD VT+ +L+
Sbjct: 477 HGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLM 511



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 102/249 (40%), Gaps = 24/249 (9%)

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V F  LI+      ++ E +  F  LR  G  + +   N L+  + + G   +A  ++E
Sbjct: 154 VVVFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYE 213

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           +         V       T + +++ LCK+ G  + +G       S + +   Y  LV  
Sbjct: 214 DFVKSGNIVNVY------TLNIMVNALCKD-GKLDNVG----VYLSEMEEKGVYADLV-- 260

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                 +  L++  C+   +  A  L   +   GL P + TYN LI GLC +G       
Sbjct: 261 -----TYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGS------ 309

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
           YE    +   +   GL P+  T+N ++   C+   V     +F  +L     PD ++F+S
Sbjct: 310 YERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSS 369

Query: 400 LIKILEINS 408
           ++ +   N 
Sbjct: 370 IVGVFSRNG 378



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 42/209 (20%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL +F+ M  +R  +P V ++N L     K    +    L+  +    +FP   +++IL
Sbjct: 487 KALSLFETM-TLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSIL 545

Query: 132 INCFCKMGRVSHGFVVLGRI--------LRSCFT-------------------------- 157
           IN FC +G VS  F +   +        L +C T                          
Sbjct: 546 INGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGV 605

Query: 158 -PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
            PD +T+ +LI     E     A  L   +   G   ++ TYN ++ G  R G    A  
Sbjct: 606 PPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEM 665

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +  +M +          PD  TY+++I+G
Sbjct: 666 VLHKMIDKG------INPDKSTYTSLING 688



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L     K +++D    L   +   GL P+  TYN ++  F + GR+    +V
Sbjct: 607 PDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMV 666

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           L +++     PD  T+TSLI    ++  + EA
Sbjct: 667 LHKMIDKGINPDKSTYTSLINGYVSKDNMKEA 698



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  ++D M   +  +P + + N +     +  +          +   G+ PD  TYN 
Sbjct: 556 SEAFRLWDEM-KEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNT 614

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN F K       F ++  +      P+ VT+ +++       R+ EA  +  K+   G
Sbjct: 615 LINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKG 674

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
              D  TY +LING     +   A  + +EM
Sbjct: 675 INPDKSTYTSLINGYVSKDNMKEAFRVHDEM 705


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 167/380 (43%), Gaps = 73/380 (19%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R + P V ++NIL  C  +T+      +LF R   TGL  D    +IL+ C     R   
Sbjct: 113 RVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDD 172

Query: 144 GF-VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL--RVFGCELDVFTYNT 200
              ++L R+      PD +++ +++K LC +SR   A  L   +  +  GC  +V TYNT
Sbjct: 173 VVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNT 232

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG--------- 251
           +I+GL R G    A NLF EM     + GVV  PD +TY++IID LCK            
Sbjct: 233 VIHGLFREGEVSKACNLFHEMM----QQGVV--PDVVTYTSIIDALCKARAMDKAELVLR 286

Query: 252 -------SANFLGFSCMASFSALN----KMAFYFPLVRVQCLCLNFL---CLIDGLCKIS 297
                    N + ++CM    +++    + A  F  +  Q L  N +     +  LCK  
Sbjct: 287 QMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHG 346

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCND-------------------------- 331
           K K A E F S+   G  PN+VTY++L+ G   +                          
Sbjct: 347 KSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFN 406

Query: 332 ---------GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
                    G MDET       L+F ++   G+ PD  TY I+I  F ++GR++     F
Sbjct: 407 IVIDAYGKRGMMDET------MLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKF 460

Query: 383 GRILPSCFTPDAVTFTSLIK 402
            +++     P+ + + SLI+
Sbjct: 461 NQMIAMGLKPEGIVYHSLIQ 480



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 178/449 (39%), Gaps = 78/449 (17%)

Query: 17  LSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEAL-- 74
           L R P   +  +  SY T   TL    + + +L+  L    K SG      +T N  +  
Sbjct: 178 LHRMPELGVEPDTISYNTVVKTLCEDSRSQRALD-LLHTMVKKSGGCSPNVVTYNTVIHG 236

Query: 75  ----------CVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
                     C   + +  +   P V ++  +   L K +  D    + +++   G  P+
Sbjct: 237 LFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPN 296

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
           + TYN +I+ +   G+      +   +      P+ VT  S +  LC   +  EAA  F 
Sbjct: 297 KVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFD 356

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG------------------ 226
            +   G + ++ TY+ L++G    G  +  LNLF  M  GNG                  
Sbjct: 357 SMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSM-EGNGIVADQRVFNIVIDAYGKR 415

Query: 227 --------------EFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMA 271
                         E GV+  PDA TY  +I    +    A+ +  F+ M +     +  
Sbjct: 416 GMMDETMLIFTQMQEQGVI--PDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGI 473

Query: 272 FYFPLVRVQCLCLN-----------------------FLCLIDGLCKISKLKIARELFQS 308
            Y  L++  C+  N                       F  +I+ LCK  ++  A ++F  
Sbjct: 474 VYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDF 533

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G  P+V+T+N LI G    G++      E  F +   + S G+ PD+ +YN LI+ 
Sbjct: 534 VIHIGERPDVITFNSLIDGYGLVGKI------EKAFGVLDAMISAGIEPDVVSYNTLIDG 587

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           +C+ GR+  G ++FG +L     P  +T+
Sbjct: 588 YCRNGRIDDGLILFGEMLSKGVKPTTITY 616



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 148/325 (45%), Gaps = 24/325 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA   FD M   +  +P + ++++L    A    +  +L+LF  +   G+  D+  +NI+
Sbjct: 350 EAAEFFDSMA-AKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIV 408

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ + K G +    ++  ++      PDA T+  +I       R+ +A   F ++   G 
Sbjct: 409 IDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGL 468

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + +   Y++LI G C  G+ + A  L  EM +       +  P+ + +++II+ LCKE  
Sbjct: 469 KPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRG-----IPRPNIVFFNSIINSLCKEG- 522

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                         A +   F   +   +   + F  LIDG   + K++ A  +  ++  
Sbjct: 523 ----------RVVEAHDIFDFVIHIGE-RPDVITFNSLIDGYGLVGKIEKAFGVLDAMIS 571

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           AG+ P+VV+YN LI G C +G++D+        +LF  + S G+ P   TY I+++    
Sbjct: 572 AGIEPDVVSYNTLIDGYCRNGRIDDG------LILFGEMLSKGVKPTTITYGIILHGLFN 625

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVT 396
            GR      +   ++ S  T D  T
Sbjct: 626 DGRTVGAKKMCHEMIESGTTMDIST 650



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 130/296 (43%), Gaps = 24/296 (8%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M++    RP +  FN +   L K         +F  +   G  PD  T+N LI+ +  +G
Sbjct: 498 MMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVG 557

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++   F VL  ++ +   PD V++ +LI   C   RI +   LF ++   G +    TY 
Sbjct: 558 KIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYG 617

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            +++GL   G T+ A  +  EM     E G     D  T   I+ GLC+     N     
Sbjct: 618 IILHGLFNDGRTVGAKKMCHEMI----ESGTTM--DISTCGIILGGLCR-----NNCDDE 666

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            +A F  L  M   F +  +         +ID + K+ K + A+ELF S+   GL+PN  
Sbjct: 667 AIAMFKKLGAMNVKFNIAIIN-------TMIDAMYKVRKREEAKELFDSISATGLVPNAS 719

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           TY ++I+ L  +G ++E  +      +F  +  +G  P     N +I    + G +
Sbjct: 720 TYGVMIKNLLKEGSVEEADN------MFSLMEKSGCAPSSRLLNYIIRVLLEKGEI 769



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 146/338 (43%), Gaps = 36/338 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +   L +        +LF  +   G+ PD  TY  +I+  CK   +    +V
Sbjct: 225 PNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELV 284

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L +++ + F P+ VT+  +I       +  E A +F ++   G   ++ T N+ ++ LC+
Sbjct: 285 LRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCK 344

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCM----- 261
            G +  A   F+ MA   G      +P+ +TYS ++ G   E    + L  F+ M     
Sbjct: 345 HGKSKEAAEFFDSMA-AKGH-----KPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGI 398

Query: 262 --------------ASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARE 304
                              +++    F  ++ Q +  +   +  +I    ++ +L  A +
Sbjct: 399 VADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMD 458

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL-FPDLYTYN 363
            F  +   GL P  + Y+ LI+G C  G + + K       L   + S G+  P++  +N
Sbjct: 459 KFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKE------LVSEMMSRGIPRPNIVFFN 512

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +IN  CK GRV     IF  ++     PD +TF SLI
Sbjct: 513 SIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLI 550



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 151/372 (40%), Gaps = 73/372 (19%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNI+     K    D  + +F ++   G+ PD  TY I+I  F +MGR++       +++
Sbjct: 405 FNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMI 464

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC-ELDVFTYNTLINGLCRTGHT 211
                P+ + + SLI+  C    +++A  L +++   G    ++  +N++IN LC+ G  
Sbjct: 465 AMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRV 524

Query: 212 IVALNLFE---------------EMANGNG-------EFGVV-------CEPDAITYSTI 242
           + A ++F+                + +G G        FGV+        EPD ++Y+T+
Sbjct: 525 VEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTL 584

Query: 243 IDGLCKEAG-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           IDG C+        + F  M S               V+   + +  ++ GL    +   
Sbjct: 585 IDGYCRNGRIDDGLILFGEMLSKG-------------VKPTTITYGIILHGLFNDGRTVG 631

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET------------------------ 337
           A+++   +  +G   ++ T  I++ GLC +   DE                         
Sbjct: 632 AKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAIINTMID 691

Query: 338 -----KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
                +  E    LF  +++TGL P+  TY ++I    K G V     +F  +  S   P
Sbjct: 692 AMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAP 751

Query: 393 DAVTFTSLIKIL 404
            +     +I++L
Sbjct: 752 SSRLLNYIIRVL 763



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 27/223 (12%)

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF-GVVCEPDAITYSTIIDGLCKEAGSA 253
           V TYN L++  CRT    V   LF       G F     + D I  S ++  L       
Sbjct: 119 VCTYNILMDCCCRTRRPTVGFALF-------GRFLKTGLKMDVIVASILLKCL------- 164

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR-- 311
               +    S   +N +    P + V+   +++  ++  LC+ S+ + A +L  ++ +  
Sbjct: 165 ----YHAKRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKS 220

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G  PNVVTYN +I GL  +G++ +  +      LF  +   G+ PD+ TY  +I+  CK
Sbjct: 221 GGCSPNVVTYNTVIHGLFREGEVSKACN------LFHEMMQQGVVPDVVTYTSIIDALCK 274

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
              +    ++  +++ + F P+ VT+  +I    I+  +++ A
Sbjct: 275 ARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETA 317



 Score = 41.2 bits (95), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            P + TYNIL++C C+  R + GF +FGR L +    D +  + L+K L
Sbjct: 116 LPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCL 164


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 149/312 (47%), Gaps = 24/312 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + + N L   L K  +    L L + +   GL  DR TYN LI+  CK G+V  GF +
Sbjct: 499 PNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFEL 558

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +++    PD  TF  L+  LC   +I EA+ L+ + +  G   +V+TY  +I+G C+
Sbjct: 559 KEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCK 618

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                   NL  E+ +   E       +++ Y+++I   C   G+ N       A+F   
Sbjct: 619 ANKVEEGENLLNELVSKKLEL------NSVVYNSLIRAYCIN-GNMN-------AAFRLR 664

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           + M     L+     C  +  L+ GLC I  +  A+ L   + + GL+PNVV Y  +I G
Sbjct: 665 DDMKSRGVLLS----CATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGG 720

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
               GQM++      V ++ + ++S  + P+ +TY I+I+ FCK+G+      +   +  
Sbjct: 721 YSKLGQMNK------VNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTE 774

Query: 388 SCFTPDAVTFTS 399
               PDAVT+ +
Sbjct: 775 KGILPDAVTYNA 786



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 152/340 (44%), Gaps = 41/340 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  F+ +     K    D  + LF ++   G+ P+  TYN +I+  CK GR+   +  
Sbjct: 254 PDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRF 313

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++++   +P  +T++  I  L    +I EA  +  ++   G   +   YNTLI+G C+
Sbjct: 314 KEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCK 373

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
            G+   AL + ++M +          P+++T +++I G CK  + G A  +    +    
Sbjct: 374 MGNISEALKIRDDMLSKG------ISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGL 427

Query: 266 ALNKMAFYFPLVRVQCLCLNF------------------------LCLIDGLCKISKLKI 301
            +N+ +F    + +  LCL F                          L+ GLCK  K   
Sbjct: 428 PINQGSFS---MVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGE 484

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A EL+  L   G +PN+VT N LI GLC  G M ET        L + +   GL  D  T
Sbjct: 485 AVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQET------LKLLRDMLERGLVFDRIT 538

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           YN LI+  CK G+V  GF +   ++     PD  TF  L+
Sbjct: 539 YNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLL 578



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 157/344 (45%), Gaps = 35/344 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++++    L K +  D    + K ++  G  P+   YN LI+ +CKMG +S    +
Sbjct: 324 PSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKI 383

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L    +P++VT  SLI+  C   +I +A  +  ++   G  ++  +++ +IN LC 
Sbjct: 384 RDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCL 443

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC------- 260
               + AL+   EM   N        P+    +T++ GLCK       +   C       
Sbjct: 444 KFRFVTALHFIREMLLRN------LRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGF 497

Query: 261 ---MASFSAL-------NKMAFYFPLVR---VQCLCLN---FLCLIDGLCKISKLKIARE 304
              + + +AL         M     L+R    + L  +   +  LI G CK  K+K   E
Sbjct: 498 VPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFE 557

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L + + + G+ P++ T+N+L+ GLCN  ++DE         L+      G  P++YTY +
Sbjct: 558 LKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASR------LWHECKKNGYVPNVYTYGV 611

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
           +I+ +CK  +V  G  +   ++      ++V + SLI+   IN 
Sbjct: 612 MIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCING 655



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 131/281 (46%), Gaps = 24/281 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + +FN+L   L      D    L+      G  P+ YTY ++I+ +CK  +V  G  
Sbjct: 568 QPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGEN 627

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++      ++V + SLI+  C    +  A  L   ++  G  L   TY++L++GLC
Sbjct: 628 LLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLC 687

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A +L +EM     + G++  P+ + Y+TII G  K  G  N +    +   S+
Sbjct: 688 NIGLVDDAKHLLDEMR----KEGLL--PNVVCYTTIIGGYSK-LGQMNKVNI-VLQEMSS 739

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            N     F           +  +IDG CK+ K K A +L   +   G++P+ VTYN    
Sbjct: 740 HNIHPNKF----------TYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTN 789

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GLC +G+++E       F +   ++S  +  D  TY  LI+
Sbjct: 790 GLCKEGKVEEA------FKVCDEMSSGAVCLDEITYTTLID 824



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 129/322 (40%), Gaps = 51/322 (15%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
            +F  L   GLFP   T   L++   K   +   + V   I      PD   F+++I   
Sbjct: 207 DVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAF 266

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C   R  +A  LF+K+   G   +V TYN +I+GLC++G    A    E+M         
Sbjct: 267 CKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEK----- 321

Query: 231 VCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
              P  ITYS  I+GL K  +   AN     C+     ++++ F    V        +  
Sbjct: 322 -VSPSLITYSVFINGLIKLEKIDEAN-----CV--LKEMSELGFVPNEVV-------YNT 366

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH--------- 339
           LIDG CK+  +  A ++   +   G+ PN VT N LI+G C   Q+ + ++         
Sbjct: 367 LIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRG 426

Query: 340 --------------------YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                               + T     + +    L P+      L++  CK G+     
Sbjct: 427 LPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAV 486

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            ++ R+L   F P+ VT  +LI
Sbjct: 487 ELWCRLLGKGFVPNIVTSNALI 508



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    L   +   GL P+   Y  +I  + K+G+++   +VL  +      P+  T+T +
Sbjct: 693 DDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIM 752

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           I   C   +  EAA L  ++   G   D  TYN   NGLC+ G    A  + +EM++G  
Sbjct: 753 IDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSG-- 810

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSA 253
               VC  D ITY+T+IDG C +  +A
Sbjct: 811 ---AVC-LDEITYTTLIDG-CHQPSTA 832



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 18/169 (10%)

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
           PD   +ST+I+  CK     + +G      FS + K+     +V        +  +I GL
Sbjct: 254 PDVHLFSTMINAFCKGHREDDAIGL-----FSKMEKLGVAPNVV-------TYNNIIHGL 301

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK  +L  A    + + +  + P+++TY++ I GL    ++DE         + K ++  
Sbjct: 302 CKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEAN------CVLKEMSEL 355

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           G  P+   YN LI+ +CK+G +S    I   +L    +P++VT  SLI+
Sbjct: 356 GFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQ 404



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 59/117 (50%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  +  + G  +K    + V  + + ++   + P+++TY I+I+ FCK+G+      +
Sbjct: 709 PNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKL 768

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           L  +      PDAVT+ +    LC E ++ EA  +  ++      LD  TY TLI+G
Sbjct: 769 LNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLIDG 825


>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 157/339 (46%), Gaps = 37/339 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKR-LNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           V S N L     + K YD V ++FK   +  G+ P+ +T NILI   CK   V     VL
Sbjct: 165 VRSLNTLLNAFVQNKRYDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVL 224

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
             +      P+ VT+T+++    +   ++ A  +F +L   G   D  TY  L+NG C  
Sbjct: 225 DEMPAMGMIPNVVTYTTILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQ 284

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE--AGSA-NFLGFSCMASF- 264
           G    A+ L ++M    GE GV  EP+ +TY  +++  CKE  AG A N L       + 
Sbjct: 285 GRLADAIKLMDDM----GENGV--EPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYV 338

Query: 265 --SAL---------------NKMAFYFPLVRVQCLCLNFL--CLIDGLCKISKLKIAREL 305
             SAL                    +  +++  C+  N +   LI  LCK  K+  AR+L
Sbjct: 339 PSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKL 398

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F    R G +P+++TYN LI G+C  G++ E         L+  +   G  P+ +TYN+L
Sbjct: 399 FGEFER-GAIPSLLTYNTLIAGMCEKGELSEAGK------LWDDMMEKGYKPNAFTYNML 451

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           I  F KIG    G  I   +L +   P+  T+  LI+ L
Sbjct: 452 IKGFSKIGNAKEGIRILEEMLDNRCMPNKSTYAILIEEL 490



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 105/254 (41%), Gaps = 26/254 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T++ IL     +       + L   +   G+ P+  TY +++  +CK  +      +
Sbjct: 269 PDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNL 328

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L   + P +     +I  LC   +I EA  L+ ++    C  D    +TLI+ LC+
Sbjct: 329 LDDMLERQYVPSSALCCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCK 388

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
            G    A  LF       GEF     P  +TY+T+I G+C+  E   A  L    M    
Sbjct: 389 EGKVWEARKLF-------GEFERGAIPSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGY 441

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             N  AF + +            LI G  KI   K    + + +     MPN  TY ILI
Sbjct: 442 KPN--AFTYNM------------LIKGFSKIGNAKEGIRILEEMLDNRCMPNKSTYAILI 487

Query: 326 RGLCN---DGQMDE 336
             LC    +G++D+
Sbjct: 488 EELCKMGMEGEVDK 501



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 43/88 (48%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R + P + ++N L   + +         L+  +   G  P+ +TYN+LI  F K+G    
Sbjct: 404 RGAIPSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKE 463

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           G  +L  +L +   P+  T+  LI++LC
Sbjct: 464 GIRILEEMLDNRCMPNKSTYAILIEELC 491


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 142/320 (44%), Gaps = 24/320 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           +  +P + ++N   G L +T   D  L + K +   GL PD +TY +L++ FCK  R   
Sbjct: 270 KECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKE 329

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
             ++   +  S   P+  T+T+LI     E  I EA  +  ++   G +L+V TYN +I 
Sbjct: 330 AKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIG 389

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G+ + G    A++LF EM           EPD  TY+ +IDG  K    A          
Sbjct: 390 GIAKAGEMAKAMSLFNEMLMAG------LEPDTWTYNLLIDGYLKSHDMAKACELLAEMK 443

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              L    F + +            LI GLC  S L+ A E+   + R G+ PNV  Y  
Sbjct: 444 ARKLTPSPFTYSV------------LISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGT 491

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI+    + +      YE    L K + + G+ PDL+ YN LI   C+  +V    ++  
Sbjct: 492 LIKAYVQESR------YEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLV 545

Query: 384 RILPSCFTPDAVTFTSLIKI 403
            +      P+A T+ + I +
Sbjct: 546 DMGEKGIKPNAHTYGAFINL 565



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 143/326 (43%), Gaps = 26/326 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL  F  ML  +   P + +++ +   L+K       + +F +   TG+ PD + YN L
Sbjct: 609 EALSTFKCMLE-KGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSL 667

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ FCK G +     +   +L +   P+ V + +LI  LC    + +A  LF ++     
Sbjct: 668 ISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDL 727

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV TY+T+I+G C++G+   A  LF+EM +          PD   Y  +IDG  KE  
Sbjct: 728 VPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKG------ISPDGYIYCILIDGCGKEGN 781

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
               L     A   ++  ++              F  LID  CK  K+  ARELF  +  
Sbjct: 782 LEKALSLFHEAQQKSVGSLS-------------AFNSLIDSFCKHGKVIEARELFDDMVD 828

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
             L PN+VTY ILI        M+E +       LF  + +  + P+  TY  L+  + +
Sbjct: 829 KKLTPNIVTYTILIDAYGKAEMMEEAEQ------LFLDMETRNIIPNTLTYTSLLLSYNQ 882

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTF 397
           IG       +F  +       DA+ +
Sbjct: 883 IGNRFKMISLFKDMEARGIACDAIAY 908



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 142/328 (43%), Gaps = 29/328 (8%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           V D M+     +P V  +  L     +   Y+  + L K +   G+ PD + YN LI   
Sbjct: 473 VLDQMIR-NGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGL 531

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+  +V    ++L  +      P+A T+ + I        I  A   F  +   G   + 
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNN 591

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             Y  LI G C  G+T+ AL+ F+ M     E G++  PD   YS II  L K   +   
Sbjct: 592 VIYTILIKGHCDVGNTVEALSTFKCML----EKGLI--PDIRAYSAIIHSLSKNGKTKEA 645

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFL--CLIDGLCKISKLKIARELFQSLPRAG 313
           +G               +   ++   +   FL   LI G CK   ++ A +L+  +   G
Sbjct: 646 MG--------------VFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNG 691

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           + PN+V YN LI GLC  G++ + +       LF  +    L PD+ TY+ +I+ +CK G
Sbjct: 692 INPNIVVYNTLINGLCKLGEVTKARE------LFDEIEEKDLVPDVVTYSTIIDGYCKSG 745

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            ++  F +F  ++    +PD   +  LI
Sbjct: 746 NLTEAFKLFDEMISKGISPDGYIYCILI 773



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 133/294 (45%), Gaps = 27/294 (9%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
            LS FK +   GL PD   Y+ +I+   K G+      V  + L++   PD   + SLI 
Sbjct: 610 ALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLIS 669

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
             C E  I +A+ L+ ++   G   ++  YNTLINGLC+ G    A  LF+E+   +   
Sbjct: 670 GFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKD--- 726

Query: 229 GVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
                PD +TYSTIIDG CK    +  F  F  M S           P   + C+     
Sbjct: 727 ---LVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGI-------SPDGYIYCI----- 771

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LIDG  K   L+ A  LF    +  +  ++  +N LI   C  G++ E +       LF
Sbjct: 772 -LIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEARE------LF 823

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +    L P++ TY ILI+ + K   +     +F  +      P+ +T+TSL+
Sbjct: 824 DDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLL 877



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 135/318 (42%), Gaps = 31/318 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   ++       +K+         FK +  +G+ P+   Y ILI   C +G       
Sbjct: 553 KPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALS 612

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
               +L     PD   ++++I  L    +  EA  +F K    G   DVF YN+LI+G C
Sbjct: 613 TFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFC 672

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A  L++EM + NG       P+ + Y+T+I+GLCK                  
Sbjct: 673 KEGDIEKASQLYDEMLH-NG-----INPNIVVYNTLINGLCK---------------LGE 711

Query: 267 LNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           + K    F  +  + L    + +  +IDG CK   L  A +LF  +   G+ P+   Y I
Sbjct: 712 VTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCI 771

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI G   +G +      E    LF       +   L  +N LI+ FCK G+V     +F 
Sbjct: 772 LIDGCGKEGNL------EKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEARELFD 824

Query: 384 RILPSCFTPDAVTFTSLI 401
            ++    TP+ VT+T LI
Sbjct: 825 DMVDKKLTPNIVTYTILI 842



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 129/284 (45%), Gaps = 29/284 (10%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G FP     N L+    K   +   + V G ++ +   PD  T+T++IK  C    +++ 
Sbjct: 202 GFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKG 261

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE-EMANGNGEFGVVCEPDAIT 238
             + +++    C+ ++FTYN  I GLC+TG    AL + +  M  G G       PD  T
Sbjct: 262 KMVLSEMEK-ECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLG-------PDGHT 313

Query: 239 YSTIIDGLCKEAGSANF-LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           Y+ ++DG CK+  S    L F  M S S LN   F             +  LIDG  K  
Sbjct: 314 YTLLVDGFCKQKRSKEAKLIFESMPS-SGLNPNRF------------TYTALIDGFIKEG 360

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
            ++ A  +   +   GL  NVVTYN +I G+   G+M +         LF  +   GL P
Sbjct: 361 NIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMS------LFNEMLMAGLEP 414

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           D +TYN+LI+ + K   ++    +   +     TP   T++ LI
Sbjct: 415 DTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLI 458



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 120/298 (40%), Gaps = 34/298 (11%)

Query: 43  VKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAK 102
           V D  +    +   CKS   G++T     EA  +FD M++   S P    + IL     K
Sbjct: 728 VPDVVTYSTIIDGYCKS---GNLT-----EAFKLFDEMISKGIS-PDGYIYCILIDGCGK 778

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
             + +  LSLF       +      +N LI+ FCK G+V     +   ++    TP+ VT
Sbjct: 779 EGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVT 837

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
           +T LI        + EA  LF  +       +  TY +L+    + G+    ++LF++M 
Sbjct: 838 YTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDME 897

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
                 G+ C  DAI Y  +    CKE  S        + +   LNK         V+ +
Sbjct: 898 ----ARGIAC--DAIAYGVMASAYCKEGKS--------LEALKLLNKSL-------VEGI 936

Query: 283 CLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            L    F  LI  LCK  ++    EL   + +  L  +  T N L+ G    G  DE 
Sbjct: 937 KLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEA 994


>gi|255660974|gb|ACU25656.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 372

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 151/316 (47%), Gaps = 38/316 (12%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 58  VSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 117

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +     DA  ++++I  LC E+ +  A ++   +   GC+ +V  YNTLINGL    
Sbjct: 118 MAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGAS 177

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        + C P  ITY+T+I+GLCK                   NK
Sbjct: 178 KFEDAIRVFREMGT------MHCSPTIITYNTLINGLCK-------------------NK 212

Query: 270 M-AFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
           M    + LV+      +    + +  L+ GLC   +++ A  L+  +   G  P+V  +N
Sbjct: 213 MFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMHN 272

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           ILI GLC+ G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+
Sbjct: 273 ILIHGLCSVGKM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIW 326

Query: 383 GRILPSCFTPDAVTFT 398
            RIL +   PD +++ 
Sbjct: 327 ARILRNGLEPDIISYN 342



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 34/326 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K  + D  L + +     G   D + Y+ 
Sbjct: 75  DEVISIWELMKESGFVEDSIT-YGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSA 133

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+   + +LI  L   S+  +A  +F ++    
Sbjct: 134 MINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 193

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A NL +E+ +         +P  ITYS ++ GLC + 
Sbjct: 194 CSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKG------LDPGVITYSMLMKGLCLDH 247

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L       ++ +    F  P V++  +      LI GLC + K+++A  L+  + 
Sbjct: 248 RVERALXL-----WNQVTSKGFK-PDVQMHNI------LIHGLCSVGKMQLALSLYFDMN 295

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R    PN+V++N L+ G   DG +          +++ R+   GL PD+ +YNI +   C
Sbjct: 296 RWKCAPNLVSHNTLMEGFYKDGDI------RNALVIWARILRNGLEPDIISYNITLEGLC 349

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVT 396
              R+S   +         F  DAVT
Sbjct: 350 SCNRISDAIL---------FLHDAVT 366



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 139/300 (46%), Gaps = 29/300 (9%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 6   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCF-ELWEMMGSEGNRSVSSFNIM 64

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++  EMA   G
Sbjct: 65  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL-EMAEQKG 123

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCL 284
             GV+   DA  YS +I+GLCKEA        +   + S LN M  +   P V V     
Sbjct: 124 --GVL---DAFAYSAMINGLCKEA--------NLDRAVSVLNGMIKSGCKPNVHV----- 165

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  LI+GL   SK + A  +F+ +      P ++TYN LI GLC      + K +   +
Sbjct: 166 -YNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLC------KNKMFGEAY 218

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L K L   GL P + TY++L+   C   RV     ++ ++    F PD      LI  L
Sbjct: 219 NLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMHNILIHGL 278



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 128/276 (46%), Gaps = 24/276 (8%)

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           ++NI++      G+V     +   +  S F  D++T+  L+   C    I ++  +    
Sbjct: 60  SFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 119

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G  LD F Y+ +INGLC+  +   A+++       NG     C+P+   Y+T+I+GL
Sbjct: 120 EQKGGVLDAFAYSAMINGLCKEANLDRAVSVL------NGMIKSGCKPNVHVYNTLINGL 173

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
               G++ F     +  F  +  M             + +  LI+GLCK      A  L 
Sbjct: 174 ---VGASKF--EDAIRVFREMGTM-------HCSPTIITYNTLINGLCKNKMFGEAYNLV 221

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           + L   GL P V+TY++L++GLC D ++      E    L+ ++ S G  PD+  +NILI
Sbjct: 222 KELLDKGLDPGVITYSMLMKGLCLDHRV------ERALXLWNQVTSKGFKPDVQMHNILI 275

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  C +G++     ++  +      P+ V+  +L++
Sbjct: 276 HGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLME 311



 Score = 45.1 bits (105), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 51/274 (18%), Positives = 98/274 (35%), Gaps = 60/274 (21%)

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G +     V   I+ S  +PDAV + +++      ++I +   L+  +   G    V ++
Sbjct: 3   GDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEGNR-SVSSF 61

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           N ++ GL   G     ++++E M     E G V   D+ITY                   
Sbjct: 62  NIMMRGLFDNGKVDEVISIWELMK----ESGFV--EDSITYGI----------------- 98

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                                         L+ G CK   +  +  + +   + G + + 
Sbjct: 99  ------------------------------LVHGFCKNGYIDKSLHVLEMAEQKGGVLDA 128

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
             Y+ +I GLC +  +D          +   +  +G  P+++ YN LIN      +    
Sbjct: 129 FAYSAMINGLCKEANLDRA------VSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDA 182

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
             +F  +     +P  +T+ +LI  L  N  F +
Sbjct: 183 IRVFREMGTMHCSPTIITYNTLINGLCKNKMFGE 216


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 156/339 (46%), Gaps = 26/339 (7%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           S  P+ A+  FD+       +  V S+N L   L K+ H      ++K L  +G  P+  
Sbjct: 4   SSRPDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLV 63

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           T+ ILI   CK G+ +     L  +      PD   F  LI  L  +    +A  LF  +
Sbjct: 64  TFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENM 123

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID-G 245
                  D+FTYNT+I+GLC++G+   A  L EEM    G+      PD +TY+T+I+ G
Sbjct: 124 ESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGK----SAPDIVTYNTLINAG 179

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           +CK+             +   L+ M    P   V    + +  +I  LC   ++  A E+
Sbjct: 180 ICKDG--------DVEEALEILDGMKLAGPAPDV----ITYNSIIHALCVAGRVVEAAEI 227

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
            +++  +   P++VT+N L+ G C  G +           + + +    + PD+ TY IL
Sbjct: 228 LKTMSCS---PDLVTFNTLLDGFCKAGMLPRA------LEVLEEMCRENILPDVITYTIL 278

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +N  C++G+V   F +   I+   + PD + +TSL+  L
Sbjct: 279 VNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGL 317



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 152/335 (45%), Gaps = 37/335 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +FN L     K       L + + +    + PD  TY IL+N  C++G+V   F +
Sbjct: 235 PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYL 294

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL--RVFGCEL-------DVFTY 198
           L  I+R  + PD + +TSL+  LC    I EA  L  ++  R    E+        +FTY
Sbjct: 295 LEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTY 354

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           N ++ GL + G    A++L  ++       G V  PD +TY+T+IDGLCK    AN +  
Sbjct: 355 NIVLGGLIKDGSISKAVSLISDLV----ARGYV--PDVVTYNTLIDGLCK----ANRVRE 404

Query: 259 SCMASFSALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
           +C       ++MA    FP        +    ++ GLC++ ++  A  L   + R    P
Sbjct: 405 AC----DLADEMASLGCFPN------DVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAP 454

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           NVV Y  LI GLC   +MD+        ++   +   G+  D + Y  LI      GRV+
Sbjct: 455 NVVVYTSLIDGLCKSDRMDDA------CVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVA 508

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411
               ++  ++   F PD  T  +L +    NS F 
Sbjct: 509 EAMAMYDEMVARGFLPDGSTSKTLEEAAMSNSVFE 543


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 142/320 (44%), Gaps = 24/320 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           +  +P + ++N   G L +T   D  L + K +   GL PD +TY +L++ FCK  R   
Sbjct: 270 KECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKE 329

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
             ++   +  S   P+  T+T+LI     E  I EA  +  ++   G +L+V TYN +I 
Sbjct: 330 AKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIG 389

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           G+ + G    A++LF EM           EPD  TY+ +IDG  K    A          
Sbjct: 390 GIAKAGEMAKAMSLFNEMLMAG------IEPDTWTYNLLIDGYLKSHDMAKACELLAEMK 443

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              L    F + +            LI GLC  S L+ A E+   + R G+ PNV  Y  
Sbjct: 444 ARKLTPSPFTYSV------------LISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGT 491

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI+    + +      YE    L K + + G+ PDL+ YN LI   C+  +V    ++  
Sbjct: 492 LIKAYVQESR------YEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLV 545

Query: 384 RILPSCFTPDAVTFTSLIKI 403
            +      P+A T+ + I +
Sbjct: 546 DMGEKGIKPNAHTYGAFINL 565



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 132/324 (40%), Gaps = 50/324 (15%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
            LS FK +   GL PD   Y+ +I+   K G+      V  + L++   PD   + SLI 
Sbjct: 610 ALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLIS 669

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN--GLCRTGHTIVALNLFEEMANGNG 226
             C E  I +A+ L+ ++   G   ++  YNTLIN  G C++G+   A  LF+EM +   
Sbjct: 670 GFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKG- 728

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
                  PD   Y  +IDG  KE      L     A   ++  ++              F
Sbjct: 729 -----ISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLS-------------AF 770

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH------- 339
             LID  CK  K+  ARELF  +    L PN+VTY ILI        M+E +        
Sbjct: 771 NSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMET 830

Query: 340 ---------YETVFL-------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
                    Y ++ L             LFK + + G+  D   Y ++ + +CK G+   
Sbjct: 831 RNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLE 890

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
              +  + L      +   F +LI
Sbjct: 891 ALKLLNKSLVEGIKLEDDVFDALI 914



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 143/364 (39%), Gaps = 65/364 (17%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           V D M+     +P V  +  L     +   Y+  + L K +   G+ PD + YN LI   
Sbjct: 473 VLDQMIR-NGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGL 531

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+  +V    ++L  +      P+A T+ + I        I  A   F  +   G   + 
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNN 591

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             Y  LI G C  G+T+ AL+ F+ M     E G++  PD   YS II  L K   +   
Sbjct: 592 VIYTILIKGHCDVGNTVEALSTFKCML----EKGLI--PDIRAYSAIIHSLSKNGKTKEA 645

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFL--CLIDGLCKISKLKIARELFQSLPRAG 313
           +G               +   ++   +   FL   LI G CK   ++ A +L+  +   G
Sbjct: 646 MG--------------VFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNG 691

Query: 314 LMPNVVTYNILIR--GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY--------- 362
           + PN+V YN LI   G C  G + E       F LF  + S G+ PD Y Y         
Sbjct: 692 INPNIVVYNTLINDYGYCKSGNLTEA------FKLFDEMISKGISPDGYIYCILIDGCGK 745

Query: 363 -------------------------NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                                    N LI+ FCK G+V     +F  ++    TP+ VT+
Sbjct: 746 EGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTY 805

Query: 398 TSLI 401
           T LI
Sbjct: 806 TILI 809



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 129/284 (45%), Gaps = 29/284 (10%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G FP     N L+    K   +   + V G ++ +   PD  T+T++IK  C    +++ 
Sbjct: 202 GFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKG 261

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE-EMANGNGEFGVVCEPDAIT 238
             + +++    C+ ++FTYN  I GLC+TG    AL + +  M  G G       PD  T
Sbjct: 262 KMVLSEMEK-ECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLG-------PDGHT 313

Query: 239 YSTIIDGLCKEAGSANF-LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           Y+ ++DG CK+  S    L F  M S S LN   F             +  LIDG  K  
Sbjct: 314 YTLLVDGFCKQKRSKEAKLIFESMPS-SGLNPNRF------------TYTALIDGFIKEG 360

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
            ++ A  +   +   GL  NVVTYN +I G+   G+M +         LF  +   G+ P
Sbjct: 361 NIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKA------MSLFNEMLMAGIEP 414

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           D +TYN+LI+ + K   ++    +   +     TP   T++ LI
Sbjct: 415 DTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLI 458



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 149/368 (40%), Gaps = 64/368 (17%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ +F+ ML M    P   ++N+L     K+        L   +    L P  +TY++L
Sbjct: 399 KAMSLFNEML-MAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVL 457

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK----------------------- 168
           I+  C    +     VL +++R+   P+   + +LIK                       
Sbjct: 458 ISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGV 517

Query: 169 ------------DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
                        LC   ++ EA  L   +   G + +  TY   IN   ++G   VA  
Sbjct: 518 LPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAER 577

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFP 275
            F++M +     G+V  P+ + Y+ +I G C    +   L  F CM     +       P
Sbjct: 578 YFKDMLSS----GIV--PNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLI-------P 624

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
            +R       +  +I  L K  K K A  +F    + G++P+V  YN LI G C +G ++
Sbjct: 625 DIRA------YSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIE 678

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILIN--CFCKIGRVSSGFVIFGRILPSCFTPD 393
           +         L+  +   G+ P++  YN LIN   +CK G ++  F +F  ++    +PD
Sbjct: 679 KASQ------LYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPD 732

Query: 394 AVTFTSLI 401
              +  LI
Sbjct: 733 GYIYCILI 740



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 134/335 (40%), Gaps = 36/335 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   ++       +K+         FK +  +G+ P+   Y ILI   C +G       
Sbjct: 553 KPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALS 612

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
               +L     PD   ++++I  L    +  EA  +F K    G   DVF YN+LI+G C
Sbjct: 613 TFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFC 672

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID--GLCKEAG-SANFLGFSCMAS 263
           + G    A  L++EM + NG       P+ + Y+T+I+  G CK    +  F  F  M S
Sbjct: 673 KEGDIEKASQLYDEMLH-NG-----INPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMIS 726

Query: 264 FSA-------------------LNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIA 302
                                 L K    F   + + +     F  LID  CK  K+  A
Sbjct: 727 KGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEA 786

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
           RELF  +    L PN+VTY ILI        M+E +       LF  + +  + P+  TY
Sbjct: 787 RELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQ------LFLDMETRNIIPNTLTY 840

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
             L+  + +IG       +F  +       DA+ +
Sbjct: 841 TSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAY 875



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 116/284 (40%), Gaps = 34/284 (11%)

Query: 57  CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
           CKS   G++T     EA  +FD M++   S P    + IL     K  + +  LSLF   
Sbjct: 709 CKS---GNLT-----EAFKLFDEMISKGIS-PDGYIYCILIDGCGKEGNLEKALSLFHEA 759

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
               +      +N LI+ FCK G+V     +   ++    TP+ VT+T LI        +
Sbjct: 760 QQKSV-GSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMM 818

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
            EA  LF  +       +  TY +L+    + G+    ++LF++M       G+ C  DA
Sbjct: 819 EEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDME----ARGIAC--DA 872

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGL 293
           I Y  +    CKE  S        + +   LNK         V+ + L    F  LI  L
Sbjct: 873 IAYGVMASAYCKEGKS--------LEALKLLNKSL-------VEGIKLEDDVFDALIFHL 917

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           CK  ++    EL   + +  L  +  T N L+ G    G  DE 
Sbjct: 918 CKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEA 961


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 156/323 (48%), Gaps = 38/323 (11%)

Query: 90  VTSFNILFGCLAKTKH-YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           V S NIL   L K K   D+ L +F+ +   G  PD YTY  LIN  C++G +S    + 
Sbjct: 155 VVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELF 214

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
             + +  F+   VT+TSLI  LC  + + EA  L  +++    E +VFTY++L++GLC+ 
Sbjct: 215 KEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKG 274

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
           GH+  A+ L E M   +        P+ +TYST+I+GLCKE             +   L+
Sbjct: 275 GHSSQAMQLLEVMDKKHH------LPNMVTYSTLINGLCKER--------KLREAVEILD 320

Query: 269 KMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPN-------V 318
           +M       R+Q L  N   +  +I GLC     + A      +   G+ PN       V
Sbjct: 321 RM-------RIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLHV 373

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
             +N++++GLCN+  +D  +     F L+  + +  +  ++ T++ L+ CFCK G +   
Sbjct: 374 RMHNMVVQGLCNN--VDPPR----AFQLYLSMRTRCISVEIDTFDCLVKCFCKRGDLHKA 427

Query: 379 FVIFGRILPSCFTPDAVTFTSLI 401
             I   ++     PD   +  +I
Sbjct: 428 ARILEEMVLDGCIPDEGVWNVVI 450



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 146/335 (43%), Gaps = 21/335 (6%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P +A+ VF  M   +  RP   ++  +   L +  H    +  ++ +   G+     + N
Sbjct: 101 PLDAIRVFHKMEGFQL-RPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLN 159

Query: 130 ILINCFCKMGR-VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           ILI   CK    V     +   +      PD+ T+ +LI  LC    I EA  LF ++  
Sbjct: 160 ILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQ 219

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G    V TY +LI+GLC++ +   A+ L EEM   +       EP+  TYS+++DGLCK
Sbjct: 220 KGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRND------IEPNVFTYSSLMDGLCK 273

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
              S+       M     ++K   + P +      + +  LI+GLCK  KL+ A E+   
Sbjct: 274 GGHSS-----QAMQLLEVMDK-KHHLPNM------VTYSTLINGLCKERKLREAVEILDR 321

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHY-ETVFLLFKRLNSTGLFPDLYTYNILIN 367
           +   GL PN   Y  +I GLC  G   E  ++ + + L     N       +  +N+++ 
Sbjct: 322 MRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQ 381

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             C        F ++  +   C + +  TF  L+K
Sbjct: 382 GLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVK 416



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 116/260 (44%), Gaps = 29/260 (11%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI-VALN 216
           P    + +++  L  E+ +  A   + ++R  G    V + N LI  LC+   T+  AL 
Sbjct: 118 PTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSALR 177

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS--FSALNKMAFYF 274
           +F+EM N        C+PD+ TY T+I+GLC+       LG    A   F  + +  F  
Sbjct: 178 IFQEMPNRG------CQPDSYTYGTLINGLCR-------LGNISEAKELFKEMEQKGFSA 224

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
            +V        +  LI GLC+ + L  A  L + + R  + PNV TY+ L+ GLC  G  
Sbjct: 225 SVV-------TYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGG-- 275

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
               H      L + ++     P++ TY+ LIN  CK  ++     I  R+      P+A
Sbjct: 276 ----HSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNA 331

Query: 395 VTFTSLIKILEINSFFRQVA 414
             +  +I  L     +++ A
Sbjct: 332 GLYGKIISGLCAAGSYQEAA 351



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 8/141 (5%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY--- 128
           EA+ + D M  ++  +P    +  +   L     Y    +    + L G+ P+R ++   
Sbjct: 314 EAVEILDRM-RIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLH 372

Query: 129 ----NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
               N+++   C        F +   +   C + +  TF  L+K  C    + +AA +  
Sbjct: 373 VRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCKRGDLHKAARILE 432

Query: 185 KLRVFGCELDVFTYNTLINGL 205
           ++ + GC  D   +N +I GL
Sbjct: 433 EMVLDGCIPDEGVWNVVIGGL 453


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 150/310 (48%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 145 FNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES+I +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             +   +++M+ 
Sbjct: 265 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKG--------DLKQAHHLIDEMS- 309

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L  A E  + + +     + V Y  LI GLC +G
Sbjct: 310 ---MKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREG 366

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           Q +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 367 QSVDAEK-------MLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 419

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 420 PSVVTYNVLM 429



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 161 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 219

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P++VTFT+LI   C   R+  A  ++ ++      
Sbjct: 220 NGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 279

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CK+   
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKG------LKPDKITYTTLIDGCCKDG-- 331

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M         +   + +  LI GLC+  +   A ++ + +   
Sbjct: 332 ------DLDTAFEHRKRMI----QENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSV 381

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 382 GLKPDARTYTMIINEFCKKGDVWKGSK------LLKEMQRDGHVPSVVTYNVLMN 430



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 209 QPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAME 268

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L    +PD +T+ +LI  LC +  + +A  L  ++ + G + D  TY TLI+G C
Sbjct: 269 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCC 328

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 329 KDGDLDTAFEHRKRMIQENTRL------DDVVYTALISGLCREGQSVD------------ 370

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G +P+VVTYN+L+ 
Sbjct: 371 AEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430

Query: 327 G 327
           G
Sbjct: 431 G 431



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 55/124 (44%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++M+  +P   ++  L     K    DT     KR+       D   Y  LI+  C+ G+
Sbjct: 308 MSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQ 367

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +L  +L     PDA T+T +I + C +  + + + L  +++  G    V TYN 
Sbjct: 368 SVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNV 427

Query: 201 LING 204
           L+NG
Sbjct: 428 LMNG 431



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQS------VFD 166

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI------- 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI       
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 226

Query: 402 KILEINSFFRQV 413
           KI + N  F ++
Sbjct: 227 KIDDANELFDEM 238


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 150/339 (44%), Gaps = 38/339 (11%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +  EA  +F  ML  R   P V +++ L   L +       + L       GL PD +TY
Sbjct: 601 STTEATSIFRCMLG-RSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTY 659

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N +I+ FCK G +   F +   + +   +P+ +T+ +LI  LC    I  A  LF  +  
Sbjct: 660 NSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPG 719

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   +  TY T+I+G C++G+   A  LF+EM       GV   PD+  YS +IDG  K
Sbjct: 720 KGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLK----GV--PPDSFVYSALIDGCRK 773

Query: 249 EAGSANFLGF------SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           E  +   L           AS S+LN                    L+DG CK  K+  A
Sbjct: 774 EGNTEKALSLFLESVQKGFASTSSLN-------------------ALMDGFCKSGKVIEA 814

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            +L + +    + P+ VTY ILI   C  G + E + +      F  +    L P+  TY
Sbjct: 815 NQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQF------FVDMQKRNLMPNALTY 868

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             L++ +   GR S  F +F  ++     PD VT++ +I
Sbjct: 869 TALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMI 907



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 154/374 (41%), Gaps = 59/374 (15%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G +      EA+ +   M + +  +P V  +N +   L K++  +        +   GL
Sbjct: 489 KGHVQEGRFQEAVRILKVM-DKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGL 547

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+ YTY  LI+ +CK G +         +L     P+ V  T+LI   C E    EA +
Sbjct: 548 KPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATS 607

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +F  +       DV TY+ LI+GL R G    A+ L  E      E G+V  PD  TY++
Sbjct: 608 IFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFL----EKGLV--PDVFTYNS 661

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           II G CK+ G                 ++  Y     +    + +  LI+GLCK  +++ 
Sbjct: 662 IISGFCKQGGIGKAF------------QLHEYMCQKGISPNIITYNALINGLCKAGEIER 709

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           ARELF  +P  GL  N VTY  +I G C  G + +       F LF  +   G+ PD + 
Sbjct: 710 ARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKA------FRLFDEMTLKGVPPDSFV 763

Query: 362 Y----------------------------------NILINCFCKIGRVSSGFVIFGRILP 387
           Y                                  N L++ FCK G+V     +   ++ 
Sbjct: 764 YSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVD 823

Query: 388 SCFTPDAVTFTSLI 401
               PD VT+T LI
Sbjct: 824 KHVKPDHVTYTILI 837



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 153/338 (45%), Gaps = 37/338 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N++ G L +    D    L K ++  GL  D +TY+ILI+ F K  R +   ++
Sbjct: 269 PSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLM 328

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P  V +T+LI     +    EA  +  ++   G +L++FTYN L+ G+C+
Sbjct: 329 LEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCK 388

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  L  EM        V  +PD  TY+ +I+G  KE  ++           S L
Sbjct: 389 FGDMEKADALLNEM------IMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNL 442

Query: 268 NKMAFYFPLVRVQCLCLN------------------------FLCLIDGLCKISKLKIAR 303
              A+   ++ +  LC +                        +  LI G  +  + + A 
Sbjct: 443 VPTAYTCGMI-INGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAV 501

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            + + + + G+ P+V+ YN +I GLC   +M+E K Y  +  + +R    GL P++YTY 
Sbjct: 502 RILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDY--LVEMIER----GLKPNVYTYG 555

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            LI+ +CK G +      F  +L     P+ V  T+LI
Sbjct: 556 ALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALI 593



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 148/363 (40%), Gaps = 64/363 (17%)

Query: 78  DYMLN---MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           D +LN   M   +P   ++N +     K ++   V  L   +  + L P  YT  ++IN 
Sbjct: 396 DALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIING 455

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            C+ G +     V   ++     P+AV +T+LIK    E R  EA  +   +   G + D
Sbjct: 456 LCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPD 515

Query: 195 VFTYNTLINGL-----------------------------------CRTGHTIVALNLFE 219
           V  YN++I GL                                   C++G   VA   F+
Sbjct: 516 VLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFK 575

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVR 278
           EM       G    P+ +  + +IDG CKE  +      F CM   S         P VR
Sbjct: 576 EM------LGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSV-------HPDVR 622

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                  +  LI GL +  KL+ A EL       GL+P+V TYN +I G C  G + +  
Sbjct: 623 T------YSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKA- 675

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                F L + +   G+ P++ TYN LIN  CK G +     +F  I       +AVT+ 
Sbjct: 676 -----FQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYA 730

Query: 399 SLI 401
           ++I
Sbjct: 731 TII 733



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 126/310 (40%), Gaps = 26/310 (8%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N L   L K    +     +  +    +  D YTY  LIN   + G    G  +L  +  
Sbjct: 205 NGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEE 264

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
              +P  VT+  +I  LC    + EA  L   +   G   DVFTY+ LI+G  +      
Sbjct: 265 KGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTE 324

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
           A  + EEM      F    +P  + Y+ +IDG  ++  S          +F    +M   
Sbjct: 325 AKLMLEEM------FSKGLKPGHVAYTALIDGFMRQGDSGE--------AFRVKEEM--- 367

Query: 274 FPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
             L R V+     +  L+ G+CK   ++ A  L   +   G+ P+  TYN +I G   + 
Sbjct: 368 --LARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQ 425

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
                K       L   +  + L P  YT  ++IN  C+ G +     +F  ++     P
Sbjct: 426 NTSRVKD------LLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKP 479

Query: 393 DAVTFTSLIK 402
           +AV +T+LIK
Sbjct: 480 NAVIYTTLIK 489



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 22/249 (8%)

Query: 79   YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
            ++ +++      +S N L     K+        L + +    + PD  TY ILI+  CK 
Sbjct: 784  FLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKT 843

Query: 139  GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
            G +         + +    P+A+T+T+L+       R  E  ALF ++     E D  T+
Sbjct: 844  GFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTW 903

Query: 199  NTLINGLCRTGHTIVALNLFEEMANGNGEFGV-VCEPDAITYSTIIDGLCKEAGSANFLG 257
            + +I+   + G  +  L L ++M    G     VC         +ID LC++   +  L 
Sbjct: 904  SVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCH-------VLIDPLCRKEHVSEVLK 956

Query: 258  FSCMASFSALN-KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
                     LN  +A    LVR    C +         K  K+  A  + +S+ R   +P
Sbjct: 957  VLEKIEEQGLNLSLATCSTLVR----CFH---------KAGKMDGAARVLKSMVRFKWVP 1003

Query: 317  NVVTYNILI 325
            +    N LI
Sbjct: 1004 DSTELNDLI 1012


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 149/318 (46%), Gaps = 22/318 (6%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V ++  L   L      DT + L   +  +G+ P+   Y+ L++ +CK GR      
Sbjct: 126 RPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGK 185

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   +      PD V +T+LI  LC   ++ +AA +   +   G E +V TYN LIN +C
Sbjct: 186 VFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMC 245

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    AL+L + M+    E GV  +PD +TY+T+I GL     S+       MA    
Sbjct: 246 KEGSVREALDLRKNMS----EKGV--QPDVVTYNTLITGL-----SSVLEMDEAMALLEE 294

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           + +        RV+   + F  +I GLCKI  ++ A ++   +   G   N+V +N+LI 
Sbjct: 295 MMQGE-----TRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIG 349

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL            +    L   + S+GL PD +TY+ILIN FCK+ +V         + 
Sbjct: 350 GLLR------VHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMR 403

Query: 387 PSCFTPDAVTFTSLIKIL 404
                P+ V +  L+K +
Sbjct: 404 HQGMEPEPVHYIPLLKAM 421



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 141/315 (44%), Gaps = 23/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V  ++ L     KT  +++V  +F+ ++  G+ PD   Y  LI+  C+ G+V     
Sbjct: 161 EPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAAR 220

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V+  +      P+ VT+  LI  +C E  + EA  L   +   G + DV TYNTLI GL 
Sbjct: 221 VMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLS 280

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A+ L EEM  G         PD +T++++I GLCK       L    M + + 
Sbjct: 281 SVLEMDEAMALLEEMMQGETRV----RPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENG 336

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                        +C  + F  LI GL ++ K+K A EL   +  +GL P+  TY+ILI 
Sbjct: 337 ------------CRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILIN 384

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C   Q++  + Y         +   G+ P+   Y  L+   C  G +     +F  + 
Sbjct: 385 GFCKMRQVERAESY------LSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMD 438

Query: 387 PSCFTPDAVTFTSLI 401
            +C   DA  ++++I
Sbjct: 439 RNCKL-DAAAYSTMI 452



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 138/296 (46%), Gaps = 31/296 (10%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRIL----RSCFTPDAVTFTSLIKDLCAESRIMEA 179
           D  +YN ++   C+ G +     +L R++    R    P+A+++T+L++ LCA+ R  +A
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLL-RVMSHEPRLASRPNAISYTTLMRALCADRRAAQA 113

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L   ++  G   DV TY TLI GLC       A+ L  EM     E G+  EP+ + Y
Sbjct: 114 VGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMC----ESGI--EPNVVVY 167

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           S ++ G CK               + ++ K+        ++   + +  LID LC+  K+
Sbjct: 168 SCLLHGYCK------------TGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKV 215

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
           K A  +   +   GL PNVVTYN+LI  +C +G + E         L K ++  G+ PD+
Sbjct: 216 KKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREA------LDLRKNMSEKGVQPDV 269

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRIL--PSCFTPDAVTFTSLIKILEINSFFRQV 413
            TYN LI     +  +     +   ++   +   PD +TF S+I  L    + RQ 
Sbjct: 270 VTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQA 325



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 33/309 (10%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF---PDRYTYNILINCFC 136
           +L+  PS     S+N +   L +    D  L L + ++        P+  +Y  L+   C
Sbjct: 46  LLSALPSVRDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALC 105

Query: 137 KMGRVSHGFVVLGRILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
              R +    +L R ++ C   PD VT+ +LI+ LC  + +  A  L  ++   G E +V
Sbjct: 106 ADRRAAQAVGLL-RSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNV 164

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             Y+ L++G C+TG       +FEEM+ G G      EPD + Y+ +ID LC+       
Sbjct: 165 VVYSCLLHGYCKTGRWESVGKVFEEMS-GRG-----IEPDVVMYTALIDSLCRHG----- 213

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRA 312
                      + K A    ++  + L  N +    LI+ +CK   ++ A +L +++   
Sbjct: 214 ----------KVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEK 263

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+ P+VVTYN LI GL +  +MDE        L       T + PDL T+N +I+  CKI
Sbjct: 264 GVQPDVVTYNTLITGLSSVLEMDEA----MALLEEMMQGETRVRPDLMTFNSVIHGLCKI 319

Query: 373 GRVSSGFVI 381
           G +     +
Sbjct: 320 GWMRQALQV 328



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           GL PD  TY+I IN F K G ++    VL ++  S F PD   F SLI+   A+    + 
Sbjct: 475 GLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKI 534

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L  ++      LD    +T++  L   G +I    L + +   + E   + + D I+ 
Sbjct: 535 LELTREMTAKDVALDPKIISTIVTSL---GASIEGQKLLQSLPGFDTE---ISKGDVISP 588

Query: 240 STIIDGLCKE 249
             +++ L K 
Sbjct: 589 HDVMNMLQKH 598


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 144/337 (42%), Gaps = 35/337 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   S N L    AK    D V   FK +   G  P  +TYNI+I+C  K G +     +
Sbjct: 96  PKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGL 155

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      PD VT+ S+I       R+ +    F +++   CE DV TYN+LIN  C+
Sbjct: 156 FEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCK 215

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF--------- 258
           +G     L  + EM           +P+ ++YST++D  CKE      + F         
Sbjct: 216 SGKLPKGLEFYREMKQSG------LKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGH 269

Query: 259 -------------SC-MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
                        +C + + S   ++A     V V+   + +  LIDGLC   ++K A +
Sbjct: 270 VPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEK 329

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           LF  +  AG++PN+ +YN LI G      MD          L   L   G+ PDL  Y  
Sbjct: 330 LFGKMVTAGVIPNLASYNALIHGFVKAKNMDR------ALELLNELKGRGIQPDLLLYGT 383

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            I   C + ++ +  V+   +  +    + + +T+L+
Sbjct: 384 FIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLM 420



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 147/339 (43%), Gaps = 36/339 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V S++ L     K       +  +  +   G  P+ +TY  L++  CK+G +S  F 
Sbjct: 235 KPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFR 294

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L      + VT+T+LI  LC   R+ EA  LF K+   G   ++ +YN LI+G  
Sbjct: 295 LANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFV 354

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC---------------KEAG 251
           +  +   AL L  E+       G   +PD + Y T I GLC               +E G
Sbjct: 355 KAKNMDRALELLNELK------GRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENG 408

Query: 252 -SANFLGFSCM--ASFSALNKMAFYFPLVRVQCL-----CLNFLCLIDGLCKISKLKIAR 303
             AN L ++ +  A F + N       L  +Q L      + F  LIDGLCK   +  A 
Sbjct: 409 IKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAI 468

Query: 304 ELFQSLPRA-GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
           + F  +    GL PN   Y  +I GLC + Q+      +    LF+++   GL PD   Y
Sbjct: 469 DYFGRMSNDFGLQPNAAVYTAMIDGLCKENQV------KAATTLFEQMAQEGLVPDRTAY 522

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             L++   K G +     +  ++       D + +TSL+
Sbjct: 523 TSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLV 561



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 160/397 (40%), Gaps = 73/397 (18%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGDI +     A  +F+ M   R   P   ++N +     K    D  +  F+ +     
Sbjct: 146 EGDIEA-----ARGLFEEM-KFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSC 199

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TYN LINCFCK G++  G      + +S   P+ V++++L+   C E  + +A  
Sbjct: 200 EPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIK 259

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
            +  +R  G   + FTY +L++  C+ G+   A  L  EM     E GV  E + +TY+ 
Sbjct: 260 FYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEML----EVGV--EWNVVTYTA 313

Query: 242 IIDGLC-----KEAGSANFLGFSCMASFSALNKMAFYFPLVR------------------ 278
           +IDGLC     KEA       F  M +   +  +A Y  L+                   
Sbjct: 314 LIDGLCDAERMKEAEKL----FGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNEL 369

Query: 279 ----VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG-- 332
               +Q   L +   I GLC + K++ A+ +   +   G+  N + Y  L+      G  
Sbjct: 370 KGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNP 429

Query: 333 --------QMDETKHYETVFLL-------------------FKRL-NSTGLFPDLYTYNI 364
                   +M E  H  TV                      F R+ N  GL P+   Y  
Sbjct: 430 TEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTA 489

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +I+  CK  +V +   +F ++      PD   +TSL+
Sbjct: 490 MIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLM 526



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 121/315 (38%), Gaps = 58/315 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S+N L     K K+ D  L L   L   G+ PD   Y   I   C + ++    VV
Sbjct: 341 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVV 400

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +  +    + + +T+L+          E   L  +++    E+ V T+  LI+GLC+
Sbjct: 401 MNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCK 460

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A++ F  M+N   +FG+  +P+A  Y+ +IDGLCKE                  
Sbjct: 461 NKLVSKAIDYFGRMSN---DFGL--QPNAAVYTAMIDGLCKE------------------ 497

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                        +++K A  LF+ + + GL+P+   Y  L+ G
Sbjct: 498 -----------------------------NQVKAATTLFEQMAQEGLVPDRTAYTSLMDG 528

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
               G M E         L  ++   G+  DL  Y  L+  F +  ++         ++ 
Sbjct: 529 NLKQGNMLE------ALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIG 582

Query: 388 SCFTPDAVTFTSLIK 402
               PD V    ++K
Sbjct: 583 EEILPDEVLCIGVLK 597



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 2/156 (1%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDR 125
           S  P E L + + M  +      V +F +L   L K K     +  F R+ N  GL P+ 
Sbjct: 426 SGNPTEGLHLLEEMQEL-DHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNA 484

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
             Y  +I+  CK  +V     +  ++ +    PD   +TSL+     +  ++EA AL  K
Sbjct: 485 AVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDK 544

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           +   G +LD+  Y +L+ G  +      A +  EEM
Sbjct: 545 MAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEM 580



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  L   L  +  L+ A + F  + R  + P   + N L+      G+ D  K +     
Sbjct: 66  FDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF----- 120

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            FK +   G  P ++TYNI+I+C  K G + +   +F  +      PD VT+ S+I
Sbjct: 121 -FKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMI 175


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 148/343 (43%), Gaps = 47/343 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +   L K +  +     F  +   GL PD  TYN L+N +CK G +     +
Sbjct: 341 PTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWL 400

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG + R+   P  +T+ +LI   C    + EA  L  ++   GC  DV TY  L+NG  +
Sbjct: 401 LGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRK 460

Query: 208 TGHTIVALNLFEEMANGNGE---FGV---VCE-----------------------PDAIT 238
             +  +A   F+EM +   +   F     +C                        PD +T
Sbjct: 461 VRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVT 520

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+ IIDGLCK              +     ++        +Q  C+ + CLI   C+   
Sbjct: 521 YNVIIDGLCK------------TGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGL 568

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           L+ AR+L   +   GL P+VVTY IL+   C  G +       + +  F+++   G+ P+
Sbjct: 569 LREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNL------YSAYGWFRKMLDVGIEPN 622

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             TYN+LI+  C  GR    F  F  +L     P+  T+T LI
Sbjct: 623 EITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLI 665



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 130/323 (40%), Gaps = 50/323 (15%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           L+ F+ +   G+ PD    N ++       R      V G +L+    P  VT+ +L+  
Sbjct: 187 LAAFRLVTCHGVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDS 246

Query: 170 LCAESRIMEAAALFTKLRVFGC--ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG- 226
              E R  EA+ L  ++   G    L+  T+N +I+ L R GH   A+ L + M      
Sbjct: 247 FLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSKKA 306

Query: 227 -------------EFGVVCE--------------PDAITYSTIIDGLCK-EAGSANFLGF 258
                        E G V +              P  +TY+ II GL K E   A  + F
Sbjct: 307 SSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKF 366

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
           + M +   L  +             + +  L++  CK   LK A  L   L RAGL P V
Sbjct: 367 AEMRAMGLLPDV-------------ITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTV 413

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           +TYN LI G C  G + E +       L + +   G FPD+ TY IL+N   K+  ++  
Sbjct: 414 LTYNTLIDGYCRLGDLAEARR------LKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMA 467

Query: 379 FVIFGRILPSCFTPDAVTFTSLI 401
              F  +L     PD   + + I
Sbjct: 468 REFFDEMLSKGLQPDCFAYNTRI 490



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 97/225 (43%), Gaps = 23/225 (10%)

Query: 118 LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177
           L G++PD  TYN++I+  CK G +     +  +++     PD +T+T LI   C    + 
Sbjct: 511 LKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLR 570

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           EA  L   +   G +  V TY  L++  CR G+   A   F +M        V  EP+ I
Sbjct: 571 EARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKM------LDVGIEPNEI 624

Query: 238 TYSTIIDGLCKEAGSA-NFLGFSCMASFS-ALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
           TY+ +I  LC    +   F  F  M     A NK  +                LIDG C+
Sbjct: 625 TYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTL--------------LIDGNCR 670

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
                 A  L+  + + G+ P+  T+N L +G  ++G M     Y
Sbjct: 671 EGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF-DEGHMYHAIEY 714



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 6/167 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N++   L KT +      L  ++   GL PD  TY  LI+  C+ G +     +
Sbjct: 516 PDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKL 575

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     P  VT+T L+   C    +  A   F K+   G E +  TYN LI+ LC 
Sbjct: 576 LNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCM 635

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           TG T +A   F EM     E G+   P+  TY+ +IDG C+E   A+
Sbjct: 636 TGRTPLAFRHFHEML----ERGLA--PNKYTYTLLIDGNCREGNWAD 676



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 1/138 (0%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++ IL     +  +  +    F+++   G+ P+  TYN+LI+  C  GR    F 
Sbjct: 585 QPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFR 644

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
               +L     P+  T+T LI   C E    +A  L+ ++   G   D  T+N L  G  
Sbjct: 645 HFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF- 703

Query: 207 RTGHTIVALNLFEEMANG 224
             GH   A+   E +  G
Sbjct: 704 DEGHMYHAIEYMENIVLG 721


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 139/310 (44%), Gaps = 24/310 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FNIL     K K+    + +F  +N  G+ P+  TYN LIN  C  G+V+    +
Sbjct: 234 PNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATAL 293

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++ SC  P+ +T  +L+   C    + +A  LF  +   G   +V TYN LI+  C+
Sbjct: 294 RDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCK 353

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
             +   A  L+  M  G G    VC PD  TY+ +I GLC++                A 
Sbjct: 354 DENMEDAFALYRIML-GKG----VC-PDVSTYNCLIAGLCRK------------GDLEAA 395

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             +        ++   + +  LID LC   ++K A  L   + R GL P+ +TYN +I G
Sbjct: 396 RNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDG 455

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C +G +           L  ++   G   ++ TYN+LI  FCK  ++     +   +L 
Sbjct: 456 YCKEGNL------RAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLE 509

Query: 388 SCFTPDAVTF 397
               P+ +T+
Sbjct: 510 KGLIPNRMTY 519



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 164/353 (46%), Gaps = 39/353 (11%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           V+  M+  R   P + SFNI+   L K    +    + + + + G+  +  TYN LI+ +
Sbjct: 150 VYKEMIRRRIE-PTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGY 208

Query: 136 CKMGRVSHGF---VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           CKMG++   +    +L  +      P+ VTF  LI   C +  +  A  +F ++   G +
Sbjct: 209 CKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVK 268

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----- 247
            +V TYN+LINGLC  G    A  L ++M N         +P+ IT++ +++G C     
Sbjct: 269 PNVVTYNSLINGLCNNGKVNEATALRDQMVNS------CLKPNIITHNALLNGFCKNKMV 322

Query: 248 KEAG-----------SANFLGFSCM-ASFSALNKMAFYFPLVRV---QCLCLN---FLCL 289
           K+AG           + N   ++ +  ++     M   F L R+   + +C +   + CL
Sbjct: 323 KQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCL 382

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           I GLC+   L+ AR L   +    L  +++TYNILI  LCN G+M      +    L   
Sbjct: 383 IAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEM------KKALRLLDE 436

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +   GL P   TYN +I+ +CK G + +   +  ++       +  T+  LIK
Sbjct: 437 MCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIK 489



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 33/321 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           VTS N L   L K      +  ++K +    + P   ++NI+IN  CK+G+++    ++ 
Sbjct: 128 VTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIE 187

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRI---MEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            +     + + +T+ +LI   C   +I    +A A+  ++R  G   +  T+N LI+G C
Sbjct: 188 DMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFC 247

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +  +   A+ +F EM N  G      +P+ +TY+++I+GLC                   
Sbjct: 248 KDKNVSAAMKVFAEM-NRQG-----VKPNVVTYNSLINGLCNNG---------------K 286

Query: 267 LNKMAFYFPLVRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +N+       +   CL  N +    L++G CK   +K A ELF  +P+ G+ PNV TYNI
Sbjct: 287 VNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNI 346

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI   C D  M      E  F L++ +   G+ PD+ TYN LI   C+ G + +   +  
Sbjct: 347 LIDAYCKDENM------EDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVS 400

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +       D +T+  LI  L
Sbjct: 401 EMDTKHLKADLITYNILIDSL 421



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 116/263 (44%), Gaps = 21/263 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  + D M+N    +P + + N L     K K       LF  +   G+ P+  TYNI
Sbjct: 288 NEATALRDQMVN-SCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNI 346

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ +CK   +   F +   +L     PD  T+  LI  LC +  +  A  L +++    
Sbjct: 347 LIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKH 406

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D+ TYN LI+ LC  G    AL L +EM           +P  +TY+T+IDG CKE 
Sbjct: 407 LKADLITYNILIDSLCNKGEMKKALRLLDEMCRKG------LKPSQLTYNTMIDGYCKEG 460

Query: 251 GSANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                L   S M     L  +A Y  L++             G CK  KL+ A  L   +
Sbjct: 461 NLRAALNLRSQMEKVGRLANVATYNVLIK-------------GFCKKDKLEDANGLLNEM 507

Query: 310 PRAGLMPNVVTYNILIRGLCNDG 332
              GL+PN +TY I+   +   G
Sbjct: 508 LEKGLIPNRMTYEIVTEEMMEKG 530



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 33/238 (13%)

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F +   +G +L V + N L++GL + G       +++EM           EP  I+++ +
Sbjct: 116 FKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRR------IEPTLISFNIV 169

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC---LIDGLCK---I 296
           I+GLCK                  LNK       ++V+ +  N +    LIDG CK   I
Sbjct: 170 INGLCK---------------VGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKI 214

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            K+  A  + + +   G+ PN VT+NILI G C D      K+      +F  +N  G+ 
Sbjct: 215 GKMYKADAILKEMRADGICPNEVTFNILIDGFCKD------KNVSAAMKVFAEMNRQGVK 268

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
           P++ TYN LIN  C  G+V+    +  +++ SC  P+ +T  +L+     N   +Q  
Sbjct: 269 PNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAG 326


>gi|255660972|gb|ACU25655.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 376

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 151/317 (47%), Gaps = 38/317 (11%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
            V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL
Sbjct: 58  SVSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL 117

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
               +     DA  ++++I  LC E+ +  A ++   +   GC+ +V  YNTLINGL   
Sbjct: 118 EMAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGA 177

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                A+ +F EM        + C P  ITY+T+I+GLCK                   N
Sbjct: 178 SKFEDAIRVFREMGT------MHCSPTIITYNTLINGLCK-------------------N 212

Query: 269 KM-AFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
           KM    + LV+      +    + +  L+ GLC   +++ A  L+  +   G  P+V  +
Sbjct: 213 KMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMH 272

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           NILI GLC+ G+M      +    L+  +N     P+L ++N L+  F K G + +  VI
Sbjct: 273 NILIHGLCSVGKM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVI 326

Query: 382 FGRILPSCFTPDAVTFT 398
           + RIL +   PD +++ 
Sbjct: 327 WARILRNGLEPDIISYN 343



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 34/326 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K  + D  L + +     G   D + Y+ 
Sbjct: 76  DEVISIWELMKESGFVEDSIT-YGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+   + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A NL +E+ +         +P  ITYS ++ GLC + 
Sbjct: 195 CSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKG------LDPGVITYSMLMKGLCLDH 248

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L       ++ +    F  P V++  +      LI GLC + K+++A  L+  + 
Sbjct: 249 RVERALXL-----WNQVTSKGFK-PDVQMHNI------LIHGLCSVGKMQLALSLYFDMN 296

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R    PN+V++N L+ G   DG +          +++ R+   GL PD+ +YNI +   C
Sbjct: 297 RWKCAPNLVSHNTLMEGFYKDGDI------RNALVIWARILRNGLEPDIISYNITLEGLC 350

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVT 396
              R+S   +         F  DAVT
Sbjct: 351 SCNRISDAIL---------FLHDAVT 367



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 139/300 (46%), Gaps = 29/300 (9%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCF-ELWEMMGSEGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++  EMA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL-EMAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCL 284
             GV+   DA  YS +I+GLCKEA        +   + S LN M  +   P V V     
Sbjct: 125 --GVL---DAFAYSAMINGLCKEA--------NLDRAVSVLNGMIKSGCKPNVHV----- 166

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  LI+GL   SK + A  +F+ +      P ++TYN LI GLC      + K +   +
Sbjct: 167 -YNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLC------KNKMFGEAY 219

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L K L   GL P + TY++L+   C   RV     ++ ++    F PD      LI  L
Sbjct: 220 NLVKELLDKGLDPGVITYSMLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMHNILIHGL 279



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 128/276 (46%), Gaps = 24/276 (8%)

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           ++NI++      G+V     +   +  S F  D++T+  L+   C    I ++  +    
Sbjct: 61  SFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMA 120

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G  LD F Y+ +INGLC+  +   A+++       NG     C+P+   Y+T+I+GL
Sbjct: 121 EQKGGVLDAFAYSAMINGLCKEANLDRAVSVL------NGMIKSGCKPNVHVYNTLINGL 174

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
               G++ F     +  F  +  M             + +  LI+GLCK      A  L 
Sbjct: 175 ---VGASKF--EDAIRVFREMGTM-------HCSPTIITYNTLINGLCKNKMFGEAYNLV 222

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           + L   GL P V+TY++L++GLC D ++      E    L+ ++ S G  PD+  +NILI
Sbjct: 223 KELLDKGLDPGVITYSMLMKGLCLDHRV------ERALXLWNQVTSKGFKPDVQMHNILI 276

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  C +G++     ++  +      P+ V+  +L++
Sbjct: 277 HGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLME 312



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/277 (18%), Positives = 100/277 (36%), Gaps = 60/277 (21%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV + +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     ++++E M     E G V   D+ITY                
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMK----ESGFV--EDSITYGI-------------- 99

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                                            L+ G CK   +  +  + +   + G +
Sbjct: 100 ---------------------------------LVHGFCKNGYIDKSLHVLEMAEQKGGV 126

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ +I GLC +  +D          +   +  +G  P+++ YN LIN      + 
Sbjct: 127 LDAFAYSAMINGLCKEANLDRA------VSVLNGMIKSGCKPNVHVYNTLINGLVGASKF 180

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                +F  +     +P  +T+ +LI  L  N  F +
Sbjct: 181 EDAIRVFREMGTMHCSPTIITYNTLINGLCKNKMFGE 217


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 147/310 (47%), Gaps = 24/310 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S N L   LAK +  +   +L+K++  +G+ P   T+N LIN   K G+V    ++L +I
Sbjct: 207 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI 266

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            +   +PD  T+TSLI   C    +  A  +F ++   GC+ +  TY+TLINGLC  G  
Sbjct: 267 FQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 326

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             AL++ EEM     E G+  EP   TY+  I  LC                  A  K  
Sbjct: 327 DEALDMLEEMI----EKGI--EPTVYTYTLPITALCAIEHEEE------AIELVARMKKR 374

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
              P V+       +  LI GL ++ KL++A  L+  + + GL+PN VTYN LI  LC  
Sbjct: 375 GCRPNVQT------YTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVG 428

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G+      + T   +F  +   G   +  TYN +I   C  G +    V+F ++L     
Sbjct: 429 GR------FSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 482

Query: 392 PDAVTFTSLI 401
           P  VT+ +LI
Sbjct: 483 PTVVTYNTLI 492



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 160/333 (48%), Gaps = 25/333 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +F +M     S     ++N +   L      +  + LF+++   G  P   TYN LI
Sbjct: 434 ALKIFHWM-EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLI 492

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N +   G V++   +L  +  +   PD  T+  L+       ++  A+  F ++   G  
Sbjct: 493 NGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLN 552

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            +  +Y TLI+G  + G   +AL+L E M     E G  C P+  +Y+ +I+GL KE   
Sbjct: 553 PNPVSYTTLIDGHSKDGKVDIALSLLERME----EMG--CNPNVESYNAVINGLSKEN-- 604

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                FS   +    +KMA    L  V    + +  LIDGLC+  + + A ++F  + + 
Sbjct: 605 ----RFS--EAEKICDKMAEQGLLPNV----ITYTTLIDGLCRNGRTQFAFKIFHDMEKR 654

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
             +PN+ TY+ LI GLC +G+ DE +      +L K +   GL PD  T+  LI+ F  +
Sbjct: 655 KCLPNLYTYSSLIYGLCQEGKADEAE------ILLKEMERKGLAPDEVTFTSLIDGFVVL 708

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
           GR+   F++  R++     P+  T++ L+K L+
Sbjct: 709 GRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQ 741



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 149/326 (45%), Gaps = 29/326 (8%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F Y L+     P V ++  L     + ++ D    +F R+   G  P+  TY+ LIN  
Sbjct: 266 IFQYDLS-----PDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGL 320

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C  GRV     +L  ++     P   T+T  I  LCA     EA  L  +++  GC  +V
Sbjct: 321 CNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNV 380

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            TY  LI+GL R G   VA+ L+ +M       G+V  P+ +TY+ +I+ LC        
Sbjct: 381 QTYTALISGLSRLGKLEVAIGLYHKMLKE----GLV--PNTVTYNALINELC-------- 426

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           +G     +    + M  +  L   Q     +  +I GLC    ++ A  LF+ + + G +
Sbjct: 427 VGGRFSTALKIFHWMEGHGSLANTQ----TYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 482

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P VVTYN LI G    G ++          L   +   G  PD +TYN L++ F K G++
Sbjct: 483 PTVVTYNTLINGYLTKGNVNNAAR------LLDLMKENGCEPDEWTYNELVSGFSKWGKL 536

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
            S    F  ++     P+ V++T+LI
Sbjct: 537 ESASFYFQEMVECGLNPNPVSYTTLI 562



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 165/408 (40%), Gaps = 85/408 (20%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           GDI      +A+ +F+ ML M P  P V ++N L        + +    L   +   G  
Sbjct: 464 GDI-----EKAMVLFEKMLKMGP-LPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCE 517

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI----KD--------- 169
           PD +TYN L++ F K G++         ++     P+ V++T+LI    KD         
Sbjct: 518 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSL 577

Query: 170 ----------------------LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
                                 L  E+R  EA  +  K+   G   +V TY TLI+GLCR
Sbjct: 578 LERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCR 637

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE--AGSANFLGFSCMASFS 265
            G T  A  +F +M          C P+  TYS++I GLC+E  A  A  L         
Sbjct: 638 NGRTQFAFKIFHDMEKRK------CLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGL 691

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           A +++               F  LIDG   + ++  A  L + +   G  PN  TY++L+
Sbjct: 692 APDEVT--------------FTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLL 737

Query: 326 RGLCNDGQMDETK------------------HYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           +GL  +  + E K                  ++E V  L  R++  G  P L TY+ L++
Sbjct: 738 KGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVS 797

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----KILEINSFFR 411
             C+ GR      +   +    F PD   + SL+    K LE++   +
Sbjct: 798 GLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALK 845



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 139/341 (40%), Gaps = 25/341 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL + + M  M    P V S+N +   L+K   +     +  ++   GL P+  TY  LI
Sbjct: 574 ALSLLERMEEM-GCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLI 632

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  C+ GR    F +   + +    P+  T++SLI  LC E +  EA  L  ++   G  
Sbjct: 633 DGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLA 692

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE--- 249
            D  T+ +LI+G    G    A  L   M +      V C+P+  TYS ++ GL KE   
Sbjct: 693 PDEVTFTSLIDGFVVLGRIDHAFLLLRRMVD------VGCKPNYRTYSVLLKGLQKECLL 746

Query: 250 ---------AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
                        +F       +F  ++ +      +  +     +  L+ GLC+  +  
Sbjct: 747 LEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFY 806

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A +L + +   G  P+   Y  L+   C + ++D          +F  + + G    L 
Sbjct: 807 EAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHA------LKIFHSIEAKGFQLHLS 860

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            Y  LI   CK G+V     +F  +L   +  D + +T L+
Sbjct: 861 IYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLV 901



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 116/277 (41%), Gaps = 36/277 (12%)

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
           Y +N+  NCF  M         L R++R   F P       +IK    E  I   A    
Sbjct: 146 YKHNM--NCFISM---------LNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLN 194

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           ++   G    +++ NTL+  L +      A NL+++M N         +P  +T++T+I+
Sbjct: 195 EISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSG------IQPSLLTFNTLIN 248

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
            L K+           +     +    F + L         +  LI G C+   L +A  
Sbjct: 249 ILSKKGK---------VREAELILSQIFQYDL---SPDVFTYTSLILGHCRNRNLDLAFG 296

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +F  + + G  PN VTY+ LI GLCN+G++DE         + + +   G+ P +YTY +
Sbjct: 297 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEA------LDMLEEMIEKGIEPTVYTYTL 350

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            I   C I        +  R+      P+  T+T+LI
Sbjct: 351 PITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALI 387



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 11/203 (5%)

Query: 29  EPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNM--RPS 86
           +P+Y T +  L+   K+   LE    E+     E  + S +P+E    F+ + N+  R S
Sbjct: 727 KPNYRTYSVLLKGLQKECLLLE----EKVAVQHEA-VYSFSPHEKDVNFEIVSNLLARMS 781

Query: 87  R----PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142
                P + +++ L   L +   +     L K +   G  PDR  Y  L+   CK   V 
Sbjct: 782 EIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVD 841

Query: 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
           H   +   I    F      + +LI  LC   ++ EA ALF  +       D   +  L+
Sbjct: 842 HALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLV 901

Query: 203 NGLCRTGHTIVALNLFEEMANGN 225
           +GL + G   + + L   M + N
Sbjct: 902 DGLLKEGELDLCMKLLHIMESKN 924


>gi|255660994|gb|ACU25666.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 376

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 150/315 (47%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L      D V+S+++ +  +G   D  T+ IL++ FCK G ++    VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSXTFGILVHGFCKNGYINKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +     DA  ++++I  LC E+   +A ++   +   GC+ +   YNTLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANFDKAVSVLNGMIKSGCKPNAHVYNTLINGLVAAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        + C P  ITY+T+I+GLCK+                 LN 
Sbjct: 179 KFEDAIIVFREMGT------MHCSPTIITYNTLINGLCKKEMFGEAYNLVKELLDKGLNP 232

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
               + +            L+ GLC   K++ A +L+  +   G  P+V  +NILI GLC
Sbjct: 233 GVITYSM------------LMKGLCLDHKVERALQLWNQVTSKGFKPDVRMHNILIHGLC 280

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+ RIL + 
Sbjct: 281 SVGKM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 390 FTPDAVTFTSLIKIL 404
             PD +++   +K L
Sbjct: 335 LEPDIISYNITLKGL 349



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 132/289 (45%), Gaps = 24/289 (8%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +F IL     K  + +  L + +     G   D + Y+ +IN  CK         VL  +
Sbjct: 96  TFGILVHGFCKNGYINKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANFDKAVSVLNGM 155

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           ++S   P+A  + +LI  L A S+  +A  +F ++    C   + TYNTLINGLC+    
Sbjct: 156 IKSGCKPNAHVYNTLINGLVAASKFEDAIIVFREMGTMHCSPTIITYNTLINGLCKKEMF 215

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A NL +E+ +          P  ITYS ++ GLC +      L       ++ +    
Sbjct: 216 GEAYNLVKELLDKG------LNPGVITYSMLMKGLCLDHKVERALQL-----WNQVTSKG 264

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F  P VR+  +      LI GLC + K+++A  L+  + R    PN+V++N L+ G   D
Sbjct: 265 FK-PDVRMHNI------LIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKD 317

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           G +          +++ R+   GL PD+ +YNI +   C   R+S   +
Sbjct: 318 GDI------RNALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAIL 360



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 148/319 (46%), Gaps = 36/319 (11%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKMSPDAVVYNAMLNGYFRVAKIKDCF-ELWEMMGSEGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  T+  L++G C+ G+   +L++  EMA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKKSGFVEDSXTFGILVHGFCKNGYINKSLHVL-EMAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAG---------------------SANFLGFSCMASFS 265
             GV+   DA  YS +I+GLCKEA                        N L    +A+  
Sbjct: 125 --GVL---DAFAYSAMINGLCKEANFDKAVSVLNGMIKSGCKPNAHVYNTLINGLVAASK 179

Query: 266 ALNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
             + +  +  +  + C    + +  LI+GLCK      A  L + L   GL P V+TY++
Sbjct: 180 FEDAIIVFREMGTMHCSPTIITYNTLINGLCKKEMFGEAYNLVKELLDKGLNPGVITYSM 239

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++GLC D ++      E    L+ ++ S G  PD+  +NILI+  C +G++     ++ 
Sbjct: 240 LMKGLCLDHKV------ERALQLWNQVTSKGFKPDVRMHNILIHGLCSVGKMQLALSLYF 293

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +      P+ V+  +L++
Sbjct: 294 DMNRWKCAPNLVSHNTLME 312



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 110/260 (42%), Gaps = 54/260 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ V + M+     +P    +N L   L     ++  + +F+ +      P   TYN 
Sbjct: 146 DKAVSVLNGMIK-SGCKPNAHVYNTLINGLVAASKFEDAIIVFREMGTMHCSPTIITYNT 204

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK       + ++  +L     P  +T++ L+K LC + ++  A  L+ ++   G
Sbjct: 205 LINGLCKKEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKG 264

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV  +N LI+GLC  G   +AL+L+ +M          C P+ ++++T+++G  K+ 
Sbjct: 265 FKPDVRMHNILIHGLCSVGKMQLALSLYFDMNRWK------CAPNLVSHNTLMEGFYKDG 318

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              N                                               A  ++  + 
Sbjct: 319 DIRN-----------------------------------------------ALVIWARIL 331

Query: 311 RAGLMPNVVTYNILIRGLCN 330
           R GL P++++YNI ++GLC+
Sbjct: 332 RNGLEPDIISYNITLKGLCS 351



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 16/207 (7%)

Query: 49  LEQFLKERCKSSGE-------GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA 101
           L   +K  CK +         G + +    +A+ VF  M  M  S P + ++N L   L 
Sbjct: 152 LNGMIKSGCKPNAHVYNTLINGLVAASKFEDAIIVFREMGTMHCS-PTIITYNTLINGLC 210

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K + +    +L K L   GL P   TY++L+   C   +V     +  ++    F PD  
Sbjct: 211 KKEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVR 270

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE- 220
               LI  LC+  ++  A +L+  +  + C  ++ ++NTL+ G  + G    AL ++   
Sbjct: 271 MHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARI 330

Query: 221 MANGNGEFGVVCEPDAITYSTIIDGLC 247
           + NG        EPD I+Y+  + GLC
Sbjct: 331 LRNG-------LEPDIISYNITLKGLC 350



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V   NIL   L         LSL+  +N     P+  ++N L+  F K G + +  V
Sbjct: 266 KPDVRMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALV 325

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           +  RILR+   PD +++   +K LC+ +RI +A
Sbjct: 326 IWARILRNGLEPDIISYNITLKGLCSCNRISDA 358



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/207 (18%), Positives = 82/207 (39%), Gaps = 25/207 (12%)

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C +G    A  +++E+            PDA+ Y+ +++G  + A   +      M    
Sbjct: 1   CESGDIDGAERVYKEIVESK------MSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSE 54

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
               ++ +  ++R             GL    K+     +++ + ++G + +  T+ IL+
Sbjct: 55  GNRSVSSFNIMMR-------------GLFDNGKVDEVISIWELMKKSGFVEDSXTFGILV 101

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C +G ++++ H      + +     G   D + Y+ +IN  CK         +   +
Sbjct: 102 HGFCKNGYINKSLH------VLEMAEQKGGVLDAFAYSAMINGLCKEANFDKAVSVLNGM 155

Query: 386 LPSCFTPDAVTFTSLIKILEINSFFRQ 412
           + S   P+A  + +LI  L   S F  
Sbjct: 156 IKSGCKPNAHVYNTLINGLVAASKFED 182


>gi|255660968|gb|ACU25653.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 376

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 151/317 (47%), Gaps = 38/317 (11%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
            V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL
Sbjct: 58  SVSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL 117

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
               +      A  ++++I  LC E+ +  A ++   +   GC+ +V  YNTLINGL   
Sbjct: 118 EMAEQKGGVLGAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGA 177

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                A+ +F EM        + C P  ITY+T+I+G CK                   N
Sbjct: 178 SKFEDAIRVFREMGT------MHCSPTIITYNTLINGFCK-------------------N 212

Query: 269 KM-AFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
           KM    + LV+      +    + +  L++GLC   K++ A +L+  +   G  P+V  +
Sbjct: 213 KMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCFDHKVERALQLWNQVTSKGFKPDVQMH 272

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           NILI GLC+ G+M      E    L+  +N     P+L ++N L+  F K G + +  VI
Sbjct: 273 NILIHGLCSVGKM------ELALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVI 326

Query: 382 FGRILPSCFTPDAVTFT 398
           + RIL +   PD +++ 
Sbjct: 327 WARILRNGLEPDIISYN 343



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 133/300 (44%), Gaps = 29/300 (9%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFE-LWEMMGSEGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++ E      G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGG 125

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCL 284
             G      A  YS +I+GLCKEA        +   + S LN M  +   P V V     
Sbjct: 126 VLG------AFAYSAMINGLCKEA--------NLDRAVSVLNGMIKSGCKPNVHV----- 166

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  LI+GL   SK + A  +F+ +      P ++TYN LI G C      + K +   +
Sbjct: 167 -YNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGFC------KNKMFGEAY 219

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L K L   GL P + TY++L+   C   +V     ++ ++    F PD      LI  L
Sbjct: 220 NLVKELLDKGLDPGVITYSMLMEGLCFDHKVERALQLWNQVTSKGFKPDVQMHNILIHGL 279



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 114/269 (42%), Gaps = 25/269 (9%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV + +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     ++++E M     E G V   D+ITY  ++ G CK       
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMK----ESGFV--EDSITYGILVHGFCKNGYIDKS 113

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L    MA        AF +              +I+GLCK + L  A  +   + ++G  
Sbjct: 114 LHVLEMAEQKGGVLGAFAYS------------AMINGLCKEANLDRAVSVLNGMIKSGCK 161

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           PNV  YN LI GL           +E    +F+ + +    P + TYN LIN FCK    
Sbjct: 162 PNVHVYNTLINGLVG------ASKFEDAIRVFREMGTMHCSPTIITYNTLINGFCKNKMF 215

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              + +   +L     P  +T++ L++ L
Sbjct: 216 GEAYNLVKELLDKGLDPGVITYSMLMEGL 244



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 53/244 (21%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N L   L     ++  + +F+ +      P   TYN LIN FCK       + 
Sbjct: 161 KPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGFCKNKMFGEAYN 220

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  +L     P  +T++ L++ LC + ++  A  L+ ++   G + DV  +N LI+GLC
Sbjct: 221 LVKELLDKGLDPGVITYSMLMEGLCFDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G   +AL+L+ +M          C P+ ++++T+++G  K+    N            
Sbjct: 281 SVGKMELALSLYFDMNRWK------CAPNLVSHNTLMEGFYKDGDIRN------------ 322

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                                              A  ++  + R GL P++++YNI + 
Sbjct: 323 -----------------------------------ALVIWARILRNGLEPDIISYNITLE 347

Query: 327 GLCN 330
           GLC+
Sbjct: 348 GLCS 351



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 9/177 (5%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ VF  M  M  S P + ++N L     K K +    +L K L   GL P   TY++L
Sbjct: 182 DAIRVFREMGTMHCS-PTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSML 240

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   C   +V     +  ++    F PD      LI  LC+  ++  A +L+  +  + C
Sbjct: 241 MEGLCFDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMELALSLYFDMNRWKC 300

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEE-MANGNGEFGVVCEPDAITYSTIIDGLC 247
             ++ ++NTL+ G  + G    AL ++   + NG        EPD I+Y+  ++GLC
Sbjct: 301 APNLVSHNTLMEGFYKDGDIRNALVIWARILRNG-------LEPDIISYNITLEGLC 350



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V   NIL   L      +  LSL+  +N     P+  ++N L+  F K G + +  V
Sbjct: 266 KPDVQMHNILIHGLCSVGKMELALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALV 325

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           +  RILR+   PD +++   ++ LC+ +RI +A
Sbjct: 326 IWARILRNGLEPDIISYNITLEGLCSCNRISDA 358


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 155/329 (47%), Gaps = 54/329 (16%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
            LSLF R+       D  TY+I+I C  + G +   F  LGR++R+ +T  A+TF+ L+K
Sbjct: 84  ALSLFNRMPRA----DLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLK 139

Query: 169 DLCAESRIMEAAAL-FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 227
            LC + R  +A  +   ++   GC  + F+YN L+ GLC    +  AL+L   M   +  
Sbjct: 140 GLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTR 199

Query: 228 FGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL---CL 284
            G  C PD ++Y+T+I+GL +E                 L+K    F  +  Q +   C+
Sbjct: 200 GG--CPPDVVSYTTVINGLLREG---------------QLDKAYCLFDEMLDQGMSPNCI 242

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ-MDETKHYETV 343
            + CL+ G C   K K A  +F+ + R G+ P+VVTYN L+  LC +G+ M+  K ++++
Sbjct: 243 TYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSM 302

Query: 344 FLLFKRLNST----------------------------GLFPDLYTYNILINCFCKIGRV 375
                + +S+                            G  PD Y +NILI  + K G V
Sbjct: 303 VKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMV 362

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               + F ++      P+ VT+ +++  L
Sbjct: 363 DEAMLAFSKMRQQGLHPNIVTYGTVMDAL 391



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 156/370 (42%), Gaps = 57/370 (15%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +P  AL +F+ M      R  + +++I+ GC ++  H D   +   R+  TG      T+
Sbjct: 80  SPAVALSLFNRM-----PRADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITF 134

Query: 129 NILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           + L+   C   R S    + L R+     TP+A ++  L+K LC E+R  +A  L   + 
Sbjct: 135 SPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMM 194

Query: 188 V----FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN------------------ 225
                 GC  DV +Y T+INGL R G    A  LF+EM +                    
Sbjct: 195 ADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSS 254

Query: 226 -------GEFGVVC----EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
                  G F  +C    EPD +TY+T++  LCK   S           F ++ K   + 
Sbjct: 255 GKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRS-----MEARKVFDSMVKKG-HK 308

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
           P   +      +  L+ G      L    +L   + R G  P+   +NILI      G +
Sbjct: 309 PDSSI------YGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMV 362

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           DE        L F ++   GL P++ TY  +++  C++G+V      F R++    TP+ 
Sbjct: 363 DE------AMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNG 416

Query: 395 VTFTSLIKIL 404
           V F +LI  L
Sbjct: 417 VVFRTLIHGL 426



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 152/342 (44%), Gaps = 35/342 (10%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           ++P    FNIL G  AK    D  +  F ++   GL P+  TY  +++  C++G+V    
Sbjct: 342 TQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAM 401

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
               R++    TP+ V F +LI  LCA  +  +A  L  ++   G   +   +NTL+N L
Sbjct: 402 SQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHL 461

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMAS 263
           C+ G    A N+F+ M        V  + D ITY+T+IDG C +     A  L    +  
Sbjct: 462 CKEGMVTRAKNIFDLMVR------VDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLD 515

Query: 264 FSALNKMAF------YFPLVRVQCLC---------------LNFLCLIDGLCKISKLKIA 302
               N++ +      Y    R++  C               + +  ++ GL +  ++  A
Sbjct: 516 GVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAA 575

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
           +EL+  + + G+   + TYNI+++GLC +   D+         +F  L          T+
Sbjct: 576 KELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDD------ALRMFHNLCLIDFHLQNRTF 629

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           NI+I+   K GR      +F  +L     P+ VT+  ++K L
Sbjct: 630 NIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSL 671



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 154/370 (41%), Gaps = 60/370 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+  +   L +    D    LF  +   G+ P+  TYN L++ +C  G+      +
Sbjct: 204 PDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGI 263

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++ R    PD VT+ +L+  LC   R MEA  +F  +   G + D   Y TL++G   
Sbjct: 264 FRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYAT 323

Query: 208 TGHTIVALNLFEEMA-NGN--------------GEFGVVCE--------------PDAIT 238
            G+ +    L + M  NG                + G+V E              P+ +T
Sbjct: 324 EGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVT 383

Query: 239 YSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLC-------------- 283
           Y T++D LC+     + +  F  + S         +  L+   C C              
Sbjct: 384 YGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMI 443

Query: 284 --------LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                   + F  L++ LCK   +  A+ +F  + R  +  +V+TY  LI G C DG++D
Sbjct: 444 GRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVD 503

Query: 336 E-TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           E TK  E + L        G+ P+  TYN +IN +CK GR+     +F ++      P  
Sbjct: 504 EATKLLEGMVL-------DGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGI 556

Query: 395 VTFTSLIKIL 404
           V +++++  L
Sbjct: 557 VIYSTILHGL 566



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 161/373 (43%), Gaps = 50/373 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+  FD +++   + P    F  L   L     +D    L   +   G+ P+   +N 
Sbjct: 398 DDAMSQFDRLISEGLT-PNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNT 456

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  CK G V+    +   ++R     D +T+T+LI   C + ++ EA  L   + + G
Sbjct: 457 LLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDG 516

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CK 248
            + +  TYNT+ING C+ G    A +LF +MA+     GV   P  + YSTI+ GL   +
Sbjct: 517 VKPNEVTYNTIINGYCKNGRIEDACSLFRQMASK----GV--NPGIVIYSTILHGLFQTR 570

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPL----VRVQCLCLN------------------- 285
              +A  L       +  + K     P+    + +Q LC N                   
Sbjct: 571 RIAAAKEL-------YLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFH 623

Query: 286 -----FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
                F  +ID L K  +   A++LF SL   GL+PNVVTY ++++ L   G +      
Sbjct: 624 LQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLL------ 677

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           E +  LF  L   G   D    N L+    + G V    V   +I  + F+ +A T  SL
Sbjct: 678 EELDDLFLSLEKNGCTADSRMLNALVGKLPQKGEVRKAGVYLSKIDENNFSLEASTAESL 737

Query: 401 IKILEINSFFRQV 413
           + ++    + + +
Sbjct: 738 VFLVSSGKYDQHI 750



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 114/265 (43%), Gaps = 37/265 (13%)

Query: 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL--FTKLRVFGCELDVFTYNT 200
           H   +   +LR     D  +   L   L A +R   A AL  F ++       D+ TY+ 
Sbjct: 50  HAHHLFDELLRR----DTTSIFDLNSALSAVARESPAVALSLFNRMP----RADLCTYSI 101

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           +I    R GH  +A      +              AIT+S ++ GLC +  +++ +    
Sbjct: 102 VIGCCSRAGHLDLAFAALGRVIRTG------WTAQAITFSPLLKGLCHDKRTSDAMDI-- 153

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL----PRAGLMP 316
                AL +M    P +       ++  L+ GLC  ++ + A  L  ++     R G  P
Sbjct: 154 -----ALRRM----PALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPP 204

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           +VV+Y  +I GL  +GQ+D+       + LF  +   G+ P+  TYN L++ +C  G+  
Sbjct: 205 DVVSYTTVINGLLREGQLDK------AYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPK 258

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
               IF ++      PD VT+ +L+
Sbjct: 259 EAIGIFRKMCRDGVEPDVVTYNTLM 283


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 158/330 (47%), Gaps = 28/330 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL + D ML  R  +P V ++ +L   + +   ++  +++   +   G  P+  TYN++
Sbjct: 161 DALSLLDDMLR-RGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVI 219

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  C+ GRV     +L R+    F PD V++T+L+K LCA  R  +   LF ++    C
Sbjct: 220 INGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNC 279

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T++ LI   CR G    A+ + E+M     E G  C  +    + +I+ +CK+  
Sbjct: 280 MPNEVTFDMLIRFFCRGGMVERAIQVLEQMT----EHG--CATNTTLCNIVINSICKQGR 333

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +        +F  LN M  Y          +++  ++ GLC+  +   A+EL   + R
Sbjct: 334 VDD--------AFKLLNDMGSY----GCNPDTISYTTVLKGLCRAERWDDAKELLNEMVR 381

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
               PN VT+N  I  LC  G +      E   +L ++++  G    + TYN L+N FC 
Sbjct: 382 NNCPPNEVTFNTFICILCQKGLI------EQAIMLIEQMSEHGCTVGVVTYNALVNGFCV 435

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G + S   +F R +P    P+ +T+T+L+
Sbjct: 436 QGHIDSALELF-RSMPC--KPNTITYTTLL 462



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 144/343 (41%), Gaps = 38/343 (11%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           NI+   + K    D    L   +   G  PD  +Y  ++   C+  R      +L  ++R
Sbjct: 322 NIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVR 381

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
           +   P+ VTF + I  LC +  I +A  L  ++   GC + V TYN L+NG C  GH   
Sbjct: 382 NNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDS 441

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---GSA-------------NFLG 257
           AL LF  M          C+P+ ITY+T++ GLC      G+A             N + 
Sbjct: 442 ALELFRSMP---------CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVT 492

Query: 258 FSCMASF---SALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSLP 310
           F+ + SF       + A       ++  C    + +  L+DG+ K    + A EL   L 
Sbjct: 493 FNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLV 552

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+V+T++ +I      G + +    E    LF  +   G+ P    YN ++   C
Sbjct: 553 SKGVSPDVITFSSII------GILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLC 606

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           K   + +    F  ++ +   P+  T+  LI+ L      ++ 
Sbjct: 607 KRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 649



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 135/322 (41%), Gaps = 66/322 (20%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC------------------------ 155
           G  PD Y    LI   C+ GR S       R+LR+                         
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDA----ARVLRAAEGSGSPVDVFAYNTLVAGYCRYGH 126

Query: 156 ------------FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
                         PDA T+T LI+ LC   R+ +A +L   +   GC+ +V TY  L+ 
Sbjct: 127 LDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLE 186

Query: 204 GLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA 262
            +CR      A+ + +EM A G       C P+ +TY+ II+G+C+E    +        
Sbjct: 187 AMCRNSGFEQAMAVLDEMRAKG-------CTPNIVTYNVIINGMCREGRVDD-------- 231

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
           +   LN++  Y      Q   +++  L+ GLC   +     ELF  +     MPN VT++
Sbjct: 232 ARELLNRLPSY----GFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFD 287

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           +LIR  C  G +      E    + +++   G   +    NI+IN  CK GRV   F + 
Sbjct: 288 MLIRFFCRGGMV------ERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLL 341

Query: 383 GRILPSCFTPDAVTFTSLIKIL 404
             +      PD +++T+++K L
Sbjct: 342 NDMGSYGCNPDTISYTTVLKGL 363



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 116/255 (45%), Gaps = 21/255 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++N L        H D+ L LF+ +      P+  TY  L+   C   R+     ++ 
Sbjct: 423 VVTYNALVNGFCVQGHIDSALELFRSMPCK---PNTITYTTLLTGLCNAERLDGAAELVA 479

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +LR    P+ VTF  L+   C +  + EA  L  ++   GC  ++ TYNTL++G+ +  
Sbjct: 480 EMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDC 539

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
            +  AL L   + +     GV   PD IT+S+II  L KE      +       F  +  
Sbjct: 540 SSEDALELLHGLVSK----GV--SPDVITFSSIIGILSKEDRIEEAVQL-----FHVVQD 588

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           +      +R + +  N + L  GLCK  ++  A + F  +   G MPN  TY ILI GL 
Sbjct: 589 IG-----MRPKAVVYNKILL--GLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLA 641

Query: 330 NDGQMDETKHYETVF 344
           ++G + E +   +V 
Sbjct: 642 HEGLLKEAQDLLSVL 656



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 9/184 (4%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN+L     +    +  + L +++   G  P+  TYN L++   K         +
Sbjct: 488 PNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALEL 547

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++    +PD +TF+S+I  L  E RI EA  LF  ++  G       YN ++ GLC+
Sbjct: 548 LHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCK 607

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFS 265
                 A++ F  M + NG     C P+  TY  +I+GL  E     A  L  S + S  
Sbjct: 608 RCEIDNAIDFFAYMVS-NG-----CMPNESTYIILIEGLAHEGLLKEAQDL-LSVLCSRG 660

Query: 266 ALNK 269
            LNK
Sbjct: 661 VLNK 664



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 286 FLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           +LC  LI  LC+  +   A  + ++   +G   +V  YN L+ G C  G +D  +     
Sbjct: 77  YLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAAR----- 131

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
               + + S  + PD YTY  LI   C  GRV+    +   +L     P+ VT+T L++ 
Sbjct: 132 ----RLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEA 187

Query: 404 LEINSFFRQV 413
           +  NS F Q 
Sbjct: 188 MCRNSGFEQA 197


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 160/334 (47%), Gaps = 25/334 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
             AL VF+ M   R S P V ++  L   L K+   +  + LF R+   GL P+  TY  
Sbjct: 229 EHALKVFEGMDGNRCS-PNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTA 287

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   C  G +   F +L  +  +   P+  TF+ LI  LC   ++ EA      L   G
Sbjct: 288 LIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKG 347

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +++   Y +LI+GLC+TG    A  L ++M +     G V  PDA +YS++IDGLC++ 
Sbjct: 348 VKVNEVVYTSLIDGLCKTGKIDAADELMQKMISE----GFV--PDAHSYSSLIDGLCRQ- 400

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                         S    M        +Q   + +  +ID L +    +  +++F  + 
Sbjct: 401 -----------KKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMI 449

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P++VTY + +R  C +G+M++ +       +  ++   G+FP+L TYN LI  + 
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAES------MIVQMVDRGVFPNLVTYNTLIRGYA 503

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +G VS  F  F  ++   + P+  ++T L++++
Sbjct: 504 NLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLV 537



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 151/341 (44%), Gaps = 41/341 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           PP+   N L   LA+ + +  + SL  R+    L     TY  LIN +C  G +      
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPARNL----RTYTTLINAYCLAGDIPAAKQH 94

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L +   PD+  +TS +   C    +  A  +F  + + GC    FTY  L++GL  
Sbjct: 95  LTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLG 154

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL----------G 257
            G    A+ +F  M   +      C PD   Y+T++ GLC EAG               G
Sbjct: 155 AGMVREAMAVFVGMRADS------CAPDTHVYATMVHGLC-EAGRTEEAEVLLEEAMSNG 207

Query: 258 FSC-MASFSAL-----NKMAFYFPLVRVQCLCLN--------FLCLIDGLCKISKLKIAR 303
           F   +  ++AL     N       L   + +  N        +  LI GLCK  K++ A 
Sbjct: 208 FEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAM 267

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            LF  +  AGL PNVVTY  LI+G CN+G      H +  F L   + + GL P+ +T++
Sbjct: 268 VLFSRMVEAGLEPNVVTYTALIQGQCNEG------HLQCAFRLLHLMETNGLVPNDWTFS 321

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +LI+  CK  +V    +  G ++      + V +TSLI  L
Sbjct: 322 VLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGL 362



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 137/315 (43%), Gaps = 53/315 (16%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  P+   YN LI+ +C  G + H   V   +  +  +P+  T+T LI  LC   ++  A
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             LF+++   G E +V TY  LI G C  GH   A  L   M       G+V  P+  T+
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETN----GLV--PNDWTF 320

Query: 240 STIIDGLCKEAGSAN---FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           S +ID LCK         FLG S +     +N++               +  LIDGLCK 
Sbjct: 321 SVLIDALCKREKVEEAQLFLG-SLVKKGVKVNEVV--------------YTSLIDGLCKT 365

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK------------------ 338
            K+  A EL Q +   G +P+  +Y+ LI GLC   ++ +                    
Sbjct: 366 GKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTY 425

Query: 339 -----------HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
                        E    +F ++ +TG+ PD+ TY + +  +C+ GR+     +  +++ 
Sbjct: 426 TIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVD 485

Query: 388 SCFTPDAVTFTSLIK 402
               P+ VT+ +LI+
Sbjct: 486 RGVFPNLVTYNTLIR 500



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 30/298 (10%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           +++F  +      PD + Y  +++  C+ GR     V+L   + + F P+ V + +LI  
Sbjct: 162 MAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDG 221

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
            C    +  A  +F  +    C  +V TY  LI+GLC++G    A+ LF  M     E G
Sbjct: 222 YCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMV----EAG 277

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---F 286
           +  EP+ +TY+ +I G C E          C  +F  L+       L+    L  N   F
Sbjct: 278 L--EPNVVTYTALIQGQCNEG------HLQC--AFRLLH-------LMETNGLVPNDWTF 320

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LID LCK  K++ A+    SL + G+  N V Y  LI GLC  G++D          L
Sbjct: 321 SVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADE------L 374

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +++ S G  PD ++Y+ LI+  C+  ++S   ++   ++        VT+T +I  L
Sbjct: 375 MQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 124/314 (39%), Gaps = 32/314 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++  L        H      L   +   GL P+ +T+++LI+  CK  +V    +
Sbjct: 279 EPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQL 338

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            LG +++     + V +TSLI  LC   +I  A  L  K+   G   D  +Y++LI+GLC
Sbjct: 339 FLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLC 398

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFS 265
           R      A  + E+M     E G+   P  +TY+ IID L +E GS      F  M +  
Sbjct: 399 RQKKLSQATLMLEDMM----EKGIQASP--VTYTIIIDELVREVGSEGPKKIFDKMIATG 452

Query: 266 ALNKMAFYFPLVRVQCL----------------------CLNFLCLIDGLCKISKLKIAR 303
               +  Y   VR  C                        + +  LI G   +  +  A 
Sbjct: 453 INPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAF 512

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
             F+ +   G  PN  +Y +L+R +      D +     +  + K L  +    D   + 
Sbjct: 513 STFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADM-KDLQESNY--DEIVWK 569

Query: 364 ILINCFCKIGRVSS 377
           ILI    + G V+ 
Sbjct: 570 ILIYGLLQKGSVAE 583


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 147/310 (47%), Gaps = 24/310 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S N L   LAK +  +   +L+K++  +G+ P   T+N LIN   K G+V    ++L +I
Sbjct: 165 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI 224

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            +   +PD  T+TSLI   C    +  A  +F ++   GC+ +  TY+TLINGLC  G  
Sbjct: 225 FQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 284

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             AL++ EEM     E G+  EP   TY+  I  LC                  A  K  
Sbjct: 285 DEALDMLEEMI----EKGI--EPTVYTYTLPITALCAIEHEEE------AIELVARMKKR 332

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
              P V+       +  LI GL ++ KL++A  L+  + + GL+PN VTYN LI  LC  
Sbjct: 333 GCRPNVQT------YTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVG 386

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G+      + T   +F  +   G   +  TYN +I   C  G +    V+F ++L     
Sbjct: 387 GR------FSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 440

Query: 392 PDAVTFTSLI 401
           P  VT+ +LI
Sbjct: 441 PTVVTYNTLI 450



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 149/326 (45%), Gaps = 29/326 (8%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F Y L+     P V ++  L     + ++ D    +F R+   G  P+  TY+ LIN  
Sbjct: 224 IFQYDLS-----PDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGL 278

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C  GRV     +L  ++     P   T+T  I  LCA     EA  L  +++  GC  +V
Sbjct: 279 CNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNV 338

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            TY  LI+GL R G   VA+ L+ +M       G+V  P+ +TY+ +I+ LC        
Sbjct: 339 QTYTALISGLSRLGKLEVAIGLYHKMLKE----GLV--PNTVTYNALINELC-------- 384

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           +G     +    + M  +  L   Q     +  +I GLC    ++ A  LF+ + + G +
Sbjct: 385 VGGRFSTALKIFHWMEGHGSLANTQ----TYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 440

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P VVTYN LI G    G ++          L   +   G  PD +TYN L++ F K G++
Sbjct: 441 PTVVTYNTLINGYLTKGNVNNAAR------LLDLMKENGCEPDEWTYNELVSGFSKWGKL 494

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
            S    F  ++     P+ V++T+LI
Sbjct: 495 ESASFYFQEMVECGLNPNPVSYTALI 520



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 152/358 (42%), Gaps = 37/358 (10%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           GDI      +A+ +F+ ML M P  P V ++N L        + +    L   +   G  
Sbjct: 422 GDI-----EKAMVLFEKMLKMGP-LPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCE 475

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD +TYN L++ F K G++         ++     P+ V++T+LI     + ++  A +L
Sbjct: 476 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSL 535

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             ++   GC  +V +YN +INGL +      A  + ++M     E G++  P+ ITY+T+
Sbjct: 536 LKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMV----EQGLL--PNVITYTTL 589

Query: 243 IDGLCKEAGSA-NFLGFSCMASFSALNKMAFYFPLVRVQC------------------LC 283
           IDGLC+   +   F  F  M     L  +  Y  L+   C                    
Sbjct: 590 IDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAERMSEIGCEPTL 649

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             +  L+ GLC+  +   A +L + +   G  P+   Y  L+   C + ++D        
Sbjct: 650 DTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHA------ 703

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +F  + + G    L  Y  LI   CK G+V     +F  +L   +  D + +T L+
Sbjct: 704 LKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLV 761



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 152/343 (44%), Gaps = 33/343 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +F +M     S     ++N +   L      +  + LF+++   G  P   TYN LI
Sbjct: 392 ALKIFHWM-EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLI 450

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N +   G V++   +L  +  +   PD  T+  L+       ++  A+  F ++   G  
Sbjct: 451 NGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLN 510

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            +  +Y  LI+G  + G   +AL+L + M     E G  C P+  +Y+ +I+GL KE   
Sbjct: 511 PNPVSYTALIDGHSKDGKVDIALSLLKRME----EMG--CNPNVESYNAVINGLSKE--- 561

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                      FS   K+        +    + +  LIDGLC+  + + A ++F  + + 
Sbjct: 562 ---------NRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKR 612

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
             +PN+ TY+ LI GLC +G+ DE           +R++  G  P L TY+ L++  C+ 
Sbjct: 613 KCLPNLYTYSSLIYGLCQEGKADEA----------ERMSEIGCEPTLDTYSTLVSGLCRK 662

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI----KILEINSFFR 411
           GR      +   +    F PD   + SL+    K LE++   +
Sbjct: 663 GRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALK 705



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 131/313 (41%), Gaps = 28/313 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   S+  L    +K    D  LSL KR+   G  P+  +YN +IN   K  R S    +
Sbjct: 511 PNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKI 570

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++     P+ +T+T+LI  LC   R   A  +F  +    C  +++TY++LI GLC+
Sbjct: 571 CDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQ 630

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  + E          + CEP   TYST++ GLC++        F         
Sbjct: 631 EGKADEAERMSE----------IGCEPTLDTYSTLVSGLCRKG------RFYEAEQLVKD 674

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K   + P   +      +  L+   CK  ++  A ++F S+   G   ++  Y  LI  
Sbjct: 675 MKERGFCPDREI------YYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICA 728

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  GQ++E +       LF  +       D   + +L++   K G +     +   +  
Sbjct: 729 LCKAGQVEEAQ------ALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMES 782

Query: 388 SCFTPDAVTFTSL 400
             FTP+  T+  L
Sbjct: 783 KNFTPNIQTYVIL 795



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 129/315 (40%), Gaps = 59/315 (18%)

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
           Y +N+  NCF  M         L R++R   F P       +IK    E  I   A    
Sbjct: 104 YKHNM--NCFISM---------LNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLN 152

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           ++   G    +++ NTL+  L +      A NL+++M N         +P  +T++T+I+
Sbjct: 153 EISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSG------IQPSLLTFNTLIN 206

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
            L K+           +     +    F + L         +  LI G C+   L +A  
Sbjct: 207 ILSKKGK---------VREAELILSQIFQYDL---SPDVFTYTSLILGHCRNRNLDLAFG 254

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET---------KHYE-TVF---------- 344
           +F  + + G  PN VTY+ LI GLCN+G++DE          K  E TV+          
Sbjct: 255 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 314

Query: 345 ---------LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
                     L  R+   G  P++ TY  LI+   ++G++     ++ ++L     P+ V
Sbjct: 315 AIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTV 374

Query: 396 TFTSLIKILEINSFF 410
           T+ +LI  L +   F
Sbjct: 375 TYNALINELCVGGRF 389


>gi|218196744|gb|EEC79171.1| hypothetical protein OsI_19856 [Oryza sativa Indica Group]
          Length = 633

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 177/380 (46%), Gaps = 34/380 (8%)

Query: 38  TLRLTVKDRASLEQFLKERCKSSGEGDITSIT-PNEALCVFDYMLNMRPSRPPVTSFNIL 96
            L L  + RA L +     C ++    ++S + P  AL V D M       P   +  +L
Sbjct: 165 ALHLLDEMRALLRRRPDAACFTTVAAALSSASRPGAALAVLDAM-AADGVAPDAAACTVL 223

Query: 97  FGCLA-KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
            G  A + + +D    + + +   G+ PD  TY+ LI+  C  G+V+    VL  +L   
Sbjct: 224 VGVYACRLRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEG 283

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG--HTIV 213
             P+A T+T ++   C   RI EA  L   +   G      TYN L+  LC+ G    + 
Sbjct: 284 CQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVD 343

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
           AL L E  A G         PD ITYS+ +DGLCK AG  +        SF+ ++KM   
Sbjct: 344 AL-LEESTAKG-------WTPDVITYSSYMDGLCK-AGRID-------KSFALVDKMLSN 387

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
              ++   + LN   L+DG+C+ S    A+ L +     G   NVV YN ++R LC++  
Sbjct: 388 G--LQPSEVTLNI--LLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRRLCDE-- 441

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
               + + +V  LF  +   G+ P+ +T+NI+++  CK+GR+     +   +    F   
Sbjct: 442 ----RRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALCL---LRSKEFVAT 494

Query: 394 AVTFTSLIKILEINSFFRQV 413
            +T+ +LI+ L I+    +V
Sbjct: 495 VITYNTLIRHLSISGEGNEV 514



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 151/351 (43%), Gaps = 44/351 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++ L   L         L +   +   G  P+ +TY  +++ +C  GR+     +
Sbjct: 251 PDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRL 310

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++ S F P   T+  L++ LC      E  AL  +    G   DV TY++ ++GLC+
Sbjct: 311 LNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCK 370

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKE--AGSANFLGFSCMASF 264
            G    +  L ++M +NG        +P  +T + ++DG+C+   A +A  L   C A  
Sbjct: 371 AGRIDKSFALVDKMLSNG-------LQPSEVTLNILLDGVCRSSTAWAAKRL-LECSAEL 422

Query: 265 SALNKMAFYFPLVRVQCLCLNFLC----------------------LIDGLCKISKLKIA 302
                +  Y  ++R  C    +L                       ++  LCK+ +L  A
Sbjct: 423 GWDANVVNYNTVMRRLCDERRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKA 482

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
             L +S      +  V+TYN LIR L   G+ +E      V LL  ++   G+ P+  TY
Sbjct: 483 LCLLRS---KEFVATVITYNTLIRHLSISGEGNE------VCLLLYQMIEGGIAPNDITY 533

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           +++I+C C+  +       F + L   F P A  F S+I+ L +     Q+
Sbjct: 534 SLVIDCLCREEKFLVALCCFYQSLEDDFFPSA--FLSIIRGLIVGGMLGQL 582


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 154/337 (45%), Gaps = 26/337 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           + S + ++AL    +M++     P   +FN L   L ++ ++D    +F  L  + +  D
Sbjct: 100 VHSHSTDQALTFLHHMIH-EGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNELK-SKVVLD 157

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            Y++ I+I   C+ G    GF +L  +     +P+ V +T+LI   C    +M A  LF 
Sbjct: 158 AYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFC 217

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           K+   G   +  TY+ L+NG  + G       ++E M       G+V  P+A  Y+ +I 
Sbjct: 218 KMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRS----GIV--PNAYAYNCLIS 271

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
             C   G      F   A                + C  + +  LI GLC+  K   A +
Sbjct: 272 EYCN--GGMVDKAFKVFAEMREKG----------IACGVMTYNILIGGLCRGKKFGEAVK 319

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L   + + GL PN+VTYNILI G C+ G+MD      T   LF +L S+GL P L TYN 
Sbjct: 320 LVHKVNKVGLSPNIVTYNILINGFCDVGKMD------TAVRLFNQLKSSGLSPTLVTYNT 373

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LI  + K+  ++    +   +   C  P  VT+T LI
Sbjct: 374 LIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILI 410



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 152/317 (47%), Gaps = 35/317 (11%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
           +LF +++  GL P+ +TY++L+N F K G    GF +   + RS   P+A  +  LI + 
Sbjct: 214 NLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEY 273

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C    + +A  +F ++R  G    V TYN LI GLCR      A+ L  ++        V
Sbjct: 274 CNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNK------V 327

Query: 231 VCEPDAITYSTIIDGLC---------------KEAG-SANFLGFSCM-ASFSALNKMAFY 273
              P+ +TY+ +I+G C               K +G S   + ++ + A +S +  +A  
Sbjct: 328 GLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGA 387

Query: 274 FPLVR---VQCLC---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             LV+    +C+    + +  LID   +++  + A E+   + ++GL+P+V TY++LI G
Sbjct: 388 LDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHG 447

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G M E         LFK L    L P+   YN +I+ +CK G       +   ++ 
Sbjct: 448 LCVHGNMKEASK------LFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVH 501

Query: 388 SCFTPDAVTFTSLIKIL 404
           S   P+  +F S I +L
Sbjct: 502 SGMVPNVASFCSTIGLL 518



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 123/281 (43%), Gaps = 34/281 (12%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++NIL G L + K +   + L  ++N  GL P+  TYNILIN FC +G++     +  
Sbjct: 298 VMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFN 357

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           ++  S  +P  VT+ +LI        +  A  L  ++          TY  LI+   R  
Sbjct: 358 QLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLN 417

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-----KEAGSANFLGFSCMASF 264
           +T  A  +   M       G+V  PD  TYS +I GLC     KEA             F
Sbjct: 418 YTEKACEMHSLMEKS----GLV--PDVYTYSVLIHGLCVHGNMKEASKL----------F 461

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            +L +M        +Q   + +  +I G CK      A  L   +  +G++PNV ++   
Sbjct: 462 KSLGEM-------HLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCST 514

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           I  LC D +  E +      LL  ++ ++GL P +  Y ++
Sbjct: 515 IGLLCRDEKWKEAE------LLLGQMINSGLKPSVSLYKMV 549



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 6/162 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L    +K ++    L L K +    + P + TY ILI+ F ++        +
Sbjct: 366 PTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEM 425

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + +S   PD  T++ LI  LC    + EA+ LF  L     + +   YNT+I+G C+
Sbjct: 426 HSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCK 485

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            G +  AL L  EM +     G+V  P+  ++ + I  LC++
Sbjct: 486 EGSSYRALRLLNEMVHS----GMV--PNVASFCSTIGLLCRD 521



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 58/136 (42%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++ IL    A+  + +    +   +  +GL PD YTY++LI+  C  G +     +
Sbjct: 401 PSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKL 460

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      P++V + ++I   C E     A  L  ++   G   +V ++ + I  LCR
Sbjct: 461 FKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCR 520

Query: 208 TGHTIVALNLFEEMAN 223
                 A  L  +M N
Sbjct: 521 DEKWKEAELLLGQMIN 536



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 82/200 (41%), Gaps = 10/200 (5%)

Query: 9   GRMRFADRL-SRKPTSSISENEPSYPTTTATLRLTVKDRASLE--QFLKERCKSSGEGDI 65
           G+M  A RL ++  +S +S    +Y T  A          +L+  + ++ERC +  +   
Sbjct: 347 GKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTY 406

Query: 66  T-------SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL 118
           T        +   E  C    ++      P V ++++L   L    +      LFK L  
Sbjct: 407 TILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGE 466

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
             L P+   YN +I+ +CK G       +L  ++ S   P+  +F S I  LC + +  E
Sbjct: 467 MHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKE 526

Query: 179 AAALFTKLRVFGCELDVFTY 198
           A  L  ++   G +  V  Y
Sbjct: 527 AELLLGQMINSGLKPSVSLY 546


>gi|255661028|gb|ACU25683.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 376

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 158/331 (47%), Gaps = 29/331 (8%)

Query: 77  FD-YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           FD + L  R     V SFN +   L      D V S+++ +  +G   D  TY IL++ F
Sbjct: 45  FDLWELMGREGSRNVASFNTMMRGLFNNGEVDEVFSIWELMKESGFVEDSTTYGILVHGF 104

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK G  +    VL    +     DA  ++++I  LC   ++ +A ++   +   GC+ + 
Sbjct: 105 CKNGYNNKSLHVLEIAKQEGGALDAFAYSAMISGLCKMGKLDKAVSVLNGMIESGCKPNT 164

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             YN LINGL        A+ +F+E+   +      C P  +TY+T+I+GLCK       
Sbjct: 165 QVYNALINGLLGASKFEDAIRVFKELGTRH------CSPTIVTYNTLINGLCK------- 211

Query: 256 LGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
            G     ++  + +M    + P V      + +  LI GLC+  K+++A +L+  +   G
Sbjct: 212 -GERFAEAYDLVKEMLEKGWNPSV------ITYSLLIKGLCQDHKVEMALQLWNQVISKG 264

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
             P+V  +NILI GLC+ G+   T+H   ++      N     P+L TYN L+  F K G
Sbjct: 265 FKPDVQMHNILIHGLCSVGK---TEHASELYFDMNHWNCA---PNLVTYNTLMEGFYKGG 318

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              +  VI+ RIL +   PD +++   +K L
Sbjct: 319 DTRNALVIWARILRNGLLPDIISYNITLKGL 349



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 136/308 (44%), Gaps = 28/308 (9%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
           T++ IL     K  + +  L + +     G   D + Y+ +I+  CKMG++     VL  
Sbjct: 95  TTYGILVHGFCKNGYNNKSLHVLEIAKQEGGALDAFAYSAMISGLCKMGKLDKAVSVLNG 154

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           ++ S   P+   + +LI  L   S+  +A  +F +L    C   + TYNTLINGLC+   
Sbjct: 155 MIESGCKPNTQVYNALINGLLGASKFEDAIRVFKELGTRHCSPTIVTYNTLINGLCKGER 214

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A +L +EM     E G    P  ITYS +I GLC++             +    N++
Sbjct: 215 FAEAYDLVKEML----EKG--WNPSVITYSLLIKGLCQD--------HKVEMALQLWNQV 260

Query: 271 --AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
               + P V++  +      LI GLC + K + A EL+  +      PN+VTYN L+ G 
Sbjct: 261 ISKGFKPDVQMHNI------LIHGLCSVGKTEHASELYFDMNHWNCAPNLVTYNTLMEGF 314

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
              G            +++ R+   GL PD+ +YNI +   C   R+S   +     +  
Sbjct: 315 YKGGDT------RNALVIWARILRNGLLPDIISYNITLKGLCACNRISVAILFLNDAVTK 368

Query: 389 CFTPDAVT 396
              P  +T
Sbjct: 369 NIVPTVIT 376



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 54/259 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ V + M+     +P    +N L   L     ++  + +FK L      P   TYN 
Sbjct: 146 DKAVSVLNGMIE-SGCKPNTQVYNALINGLLGASKFEDAIRVFKELGTRHCSPTIVTYNT 204

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK  R +  + ++  +L   + P  +T++ LIK LC + ++  A  L+ ++   G
Sbjct: 205 LINGLCKGERFAEAYDLVKEMLEKGWNPSVITYSLLIKGLCQDHKVEMALQLWNQVISKG 264

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV  +N LI+GLC  G T  A  L+ +M + N      C P+ +TY+T+++G  K  
Sbjct: 265 FKPDVQMHNILIHGLCSVGKTEHASELYFDMNHWN------CAPNLVTYNTLMEGFYKGG 318

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            + N L                                                ++  + 
Sbjct: 319 DTRNAL-----------------------------------------------VIWARIL 331

Query: 311 RAGLMPNVVTYNILIRGLC 329
           R GL+P++++YNI ++GLC
Sbjct: 332 RNGLLPDIISYNITLKGLC 350



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 117/272 (43%), Gaps = 31/272 (11%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G ++    V   +  S  +PDAV + +++       RI     L+  +   G   +V
Sbjct: 1   CESGAINAAERVYKEMAESKISPDAVVYNAMLNGFFKAGRIKNCFDLWELMGREGSR-NV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++NT++ GL   G      +++E M     E G V   D+ TY  ++ G CK       
Sbjct: 60  ASFNTMMRGLFNNGEVDEVFSIWELMK----ESGFV--EDSTTYGILVHGFCKN------ 107

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRA 312
            G++        NK      + + +   L+   +  +I GLCK+ KL  A  +   +  +
Sbjct: 108 -GYN--------NKSLHVLEIAKQEGGALDAFAYSAMISGLCKMGKLDKAVSVLNGMIES 158

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  PN   YN LI GL           +E    +FK L +    P + TYN LIN  CK 
Sbjct: 159 GCKPNTQVYNALINGLLG------ASKFEDAIRVFKELGTRHCSPTIVTYNTLINGLCKG 212

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            R +  + +   +L   + P  +T++ LIK L
Sbjct: 213 ERFAEAYDLVKEMLEKGWNPSVITYSLLIKGL 244


>gi|255660988|gb|ACU25663.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 376

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 146/321 (45%), Gaps = 24/321 (7%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R     V+SFNI+   L      + V+ +++ +  +G   D  TY IL++ FCK G +  
Sbjct: 53  REGNRSVSSFNIMMRGLFDNGKVEEVIXIWELMKKSGFVEDSITYGILVHGFCKNGYIDK 112

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              VL    +     DA  ++++I  LC E+ +  A  +   +   GC+ +   YNTLIN
Sbjct: 113 SLHVLEMAEQKGGVVDAFAYSAMINGLCKEANLDRAVCVLNGMIKSGCKPNAHVYNTLIN 172

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GL        A+ +F EM        + C P  ITY+T+I+GLCK               
Sbjct: 173 GLVGASKFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNEMFGEAYNLVKELL 226

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              LN     + +            L  GLC   K++ A +L+  +   G  P+V  +NI
Sbjct: 227 DKGLNPGVITYSM------------LXKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNI 274

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GLC+ G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+ 
Sbjct: 275 LIHGLCSVGKM------QHALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWA 328

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
           RIL +   PD +++   +K L
Sbjct: 329 RILRNGLEPDIISYNITLKGL 349



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 144/319 (45%), Gaps = 36/319 (11%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++  +  + + PD   YN ++N + ++ ++   F +   + R        +F  +
Sbjct: 7   DGAERVYNEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGREG-NRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E   ++  ++  G   D  TY  L++G C+ G+   +L++  EMA   G
Sbjct: 66  MRGLFDNGKVEEVIXIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVL-EMAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSA-------NFLGFSCMASFSALNKM-------AF 272
             GVV   DA  YS +I+GLCKEA            +   C  +    N +       + 
Sbjct: 125 --GVV---DAFAYSAMINGLCKEANLDRAVCVLNGMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 273 YFPLVRV-------QC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +   +RV        C    + +  LI+GLCK      A  L + L   GL P V+TY++
Sbjct: 180 FEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSM 239

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L +GLC D ++      E    L+ ++ S G  PD+  +NILI+  C +G++     ++ 
Sbjct: 240 LXKGLCLDHKV------EKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQHALSLYF 293

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +      P+ V+  +L++
Sbjct: 294 DMNRWKCAPNLVSHNTLME 312



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 117/261 (44%), Gaps = 29/261 (11%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++ IL     K  + D  L + +     G   D + Y+ +IN  CK   +     VL  +
Sbjct: 96  TYGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMINGLCKEANLDRAVCVLNGM 155

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           ++S   P+A  + +LI  L   S+  +A  +F ++    C   + TYNTLINGLC+    
Sbjct: 156 IKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMF 215

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL---------GFS--- 259
             A NL +E+ +          P  ITYS +  GLC +      L         GF    
Sbjct: 216 GEAYNLVKELLDKG------LNPGVITYSMLXKGLCLDHKVEKALQLWNQVTSKGFKPDV 269

Query: 260 -----CMASFSALNKM----AFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQS 308
                 +    ++ KM    + YF + R +C    ++   L++G  K   ++ A  ++  
Sbjct: 270 QMHNILIHGLCSVGKMQHALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329

Query: 309 LPRAGLMPNVVTYNILIRGLC 329
           + R GL P++++YNI ++GLC
Sbjct: 330 ILRNGLEPDIISYNITLKGLC 350



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 58/119 (48%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++++L   L      +  L L+ ++   G  PD   +NILI+  C +G++ H   +
Sbjct: 232 PGVITYSMLXKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQHALSL 291

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              + R    P+ V+  +L++    +  I  A  ++ ++   G E D+ +YN  + GLC
Sbjct: 292 YFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYNITLKGLC 350



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V   NIL   L         LSL+  +N     P+  ++N L+  F K G + +  V
Sbjct: 266 KPDVQMHNILIHGLCSVGKMQHALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALV 325

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           +  RILR+   PD +++   +K LC+ +RI +A
Sbjct: 326 IWARILRNGLEPDIISYNITLKGLCSCNRISDA 358



 Score = 45.4 bits (106), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 51/277 (18%), Positives = 97/277 (35%), Gaps = 60/277 (21%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV + +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYNEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGREG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     + ++E M       G V   D+ITY                
Sbjct: 60  SSFNIMMRGLFDNGKVEEVIXIWELMKKS----GFV--EDSITYGI-------------- 99

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                                            L+ G CK   +  +  + +   + G +
Sbjct: 100 ---------------------------------LVHGFCKNGYIDKSLHVLEMAEQKGGV 126

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ +I GLC +  +D          +   +  +G  P+ + YN LIN      + 
Sbjct: 127 VDAFAYSAMINGLCKEANLDRA------VCVLNGMIKSGCKPNAHVYNTLINGLVGASKF 180

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                +F  +     +P  +T+ +LI  L  N  F +
Sbjct: 181 EDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGE 217


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 147/310 (47%), Gaps = 24/310 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S N L   LAK +  +   +L+K++  +G+ P   T+N LIN   K G+V    ++L +I
Sbjct: 165 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQI 224

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            +   +PD  T+TSLI   C    +  A  +F ++   GC+ +  TY+TLINGLC  G  
Sbjct: 225 FQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRV 284

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             AL++ EEM     E G+  EP   TY+  I  LC                  A  K  
Sbjct: 285 DEALDMLEEMI----EKGI--EPTVYTYTLPITALCAIEHEEE------AIELVARMKKR 332

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
              P V+       +  LI GL ++ KL++A  L+  + + GL+PN VTYN LI  LC  
Sbjct: 333 GCRPNVQT------YTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVG 386

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G+      + T   +F  +   G   +  TYN +I   C  G +    V+F ++L     
Sbjct: 387 GR------FSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 440

Query: 392 PDAVTFTSLI 401
           P  VT+ +LI
Sbjct: 441 PTVVTYNTLI 450



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 150/326 (46%), Gaps = 29/326 (8%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F Y L+     P V ++  L     + ++ D    +F R+   G  P+  TY+ LIN  
Sbjct: 224 IFQYDLS-----PDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGL 278

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C  GRV     +L  ++     P   T+T  I  LCA     EA  L  +++  GC  +V
Sbjct: 279 CNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNV 338

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            TY  LI+GL R G   VA+ L+ +M     + G+V  P+ +TY+ +I+ LC        
Sbjct: 339 QTYTALISGLSRLGKLEVAIGLYHKML----KEGLV--PNTVTYNALINELC-------- 384

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           +G     +    + M  +  L   Q     +  +I GLC    ++ A  LF+ + + G +
Sbjct: 385 VGGRFSTALKIFHWMEGHGSLANTQ----TYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 440

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P VVTYN LI G    G ++          L   +   G  PD +TYN L++ F K G++
Sbjct: 441 PTVVTYNTLINGYLTKGNVNNAAR------LLDLMKENGCEPDEWTYNELVSGFSKWGKL 494

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
            S    F  ++     P+ V++T+LI
Sbjct: 495 ESASFYFQEMVECGLNPNPVSYTALI 520



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 153/343 (44%), Gaps = 65/343 (18%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           GDI      +A+ +F+ ML M P  P V ++N L        + +    L   +   G  
Sbjct: 422 GDI-----EKAMVLFEKMLKMGP-LPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCE 475

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD +TYN L++ F K G++         ++     P+ V++T+LI     + ++  A +L
Sbjct: 476 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSL 535

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             ++   GC  +V +YN +INGL +      A  + ++M     E G++  P+ ITY+T+
Sbjct: 536 LKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMV----EQGLL--PNVITYTTL 589

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           IDGLC+                                                 + + A
Sbjct: 590 IDGLCRNG-----------------------------------------------RTQFA 602

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            ++F  + +   +PN+ TY+ LI GLC +G+ DE +      +L K +   GL PD  T+
Sbjct: 603 FKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAE------ILLKEMERKGLAPDEVTF 656

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
             LI+ F  +GR+   F++  R++     P+  T++ L+K L+
Sbjct: 657 TSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQ 699



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 129/315 (40%), Gaps = 59/315 (18%)

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
           Y +N+  NCF  M         L R++R   F P       +IK    E  I   A    
Sbjct: 104 YKHNM--NCFISM---------LNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLN 152

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           ++   G    +++ NTL+  L +      A NL+++M N         +P  +T++T+I+
Sbjct: 153 EISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSG------IQPSLLTFNTLIN 206

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
            L K+           +     +    F + L         +  LI G C+   L +A  
Sbjct: 207 ILSKKGK---------VREAELILSQIFQYDL---SPDVFTYTSLILGHCRNRNLDLAFG 254

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET---------KHYE-TVF---------- 344
           +F  + + G  PN VTY+ LI GLCN+G++DE          K  E TV+          
Sbjct: 255 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 314

Query: 345 ---------LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
                     L  R+   G  P++ TY  LI+   ++G++     ++ ++L     P+ V
Sbjct: 315 AIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTV 374

Query: 396 TFTSLIKILEINSFF 410
           T+ +LI  L +   F
Sbjct: 375 TYNALINELCVGGRF 389


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 140/330 (42%), Gaps = 54/330 (16%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P   TYN +I   C+   ++     L  ++RS + PDA TF SLI   C  +++  A  L
Sbjct: 151 PTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDL 210

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN----------------G 226
           F K+ + G   DV +Y TLI GLC  G    A+ LF EM   +                G
Sbjct: 211 FDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAERG 270

Query: 227 EFGVV---------CEPDAITYSTIIDGLCKE--AGSANFL------------GFSCMAS 263
           E G++           P    Y+ ++D  C+E  A  A  +              +C A 
Sbjct: 271 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAV 330

Query: 264 FSALNKMAFYFPLVRVQCL---------CLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
            +A  K       +RV  L            +  L+ G C   K+  A  L   +   G+
Sbjct: 331 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGV 390

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            P+ VTYN+LIRG C DG      H E+ F L + +   GL  D YTYN LIN  CK GR
Sbjct: 391 NPDAVTYNLLIRGQCIDG------HIESAFRLLRLMEGDGLIADQYTYNALINALCKDGR 444

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                 +F  +      P+AVTF SLI  L
Sbjct: 445 TDQACSLFDSLETRGIKPNAVTFNSLINGL 474



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 150/334 (44%), Gaps = 25/334 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL V + M  +R  +P V ++N L             ++L  ++   G+ PD  TYN+
Sbjct: 341 SDALRVLELM-KLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNL 399

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   C  G +   F +L  +       D  T+ +LI  LC + R  +A +LF  L   G
Sbjct: 400 LIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRG 459

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + +  T+N+LINGLC++G   +A    E+M +        C PD  TYS+ I+ LCK  
Sbjct: 460 IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAG------CTPDTYTYSSFIEHLCKMK 513

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           GS   L F        L K         V+   +N+  +I  L K     +    +  + 
Sbjct: 514 GSQEGLSFIG----EMLQK--------DVKPSTVNYTIVIHKLLKERNYGLVARTWGEMV 561

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            +G  P+VVTY   +R  C +G+++E ++      +   ++  G+  D   YN L++   
Sbjct: 562 SSGCNPDVVTYTTSMRAYCIEGRLNEAEN------VLMEMSKNGVTVDTMAYNTLMDGHA 615

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            IG+      I  ++      P+  T+  L++ L
Sbjct: 616 SIGQTDHAVSILKQMTSVASVPNQFTYFILLRHL 649



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 144/334 (43%), Gaps = 29/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F  M      +P +  +  L   L   +  +  L + +R+   G  P    Y  
Sbjct: 240 DEAVELFGEM-----DQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 294

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++  C+  +      +L  +      P  VT T++I   C E R+ +A  +   +++ G
Sbjct: 295 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 354

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+ +V+TYN L+ G C  G    A+ L  +M       GV   PDA+TY+ +I G C + 
Sbjct: 355 CKPNVWTYNALVQGFCNEGKVHKAMTLLNKMR----ACGV--NPDAVTYNLLIRGQCIDG 408

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              +   F  +        +A  +           +  LI+ LCK  +   A  LF SL 
Sbjct: 409 HIES--AFRLLRLMEGDGLIADQY----------TYNALINALCKDGRTDQACSLFDSLE 456

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ PN VT+N LI GLC  G+ D        +   +++ S G  PD YTY+  I   C
Sbjct: 457 TRGIKPNAVTFNSLINGLCKSGKAD------IAWKFLEKMVSAGCTPDTYTYSSFIEHLC 510

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K+     G    G +L     P  V +T +I  L
Sbjct: 511 KMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKL 544



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 147/339 (43%), Gaps = 18/339 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD  L  R  +P   +FN L   L K+   D      +++   G  PD YTY+ 
Sbjct: 446 DQACSLFDS-LETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSS 504

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I   CKM     G   +G +L+    P  V +T +I  L  E      A  + ++   G
Sbjct: 505 FIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSG 564

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  DV TY T +   C  G    A N+  EM+      GV    D + Y+T++DG     
Sbjct: 565 CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKN----GVTV--DTMAYNTLMDGHASIG 618

Query: 251 GSANFLG-FSCMASFSALNKMAFYFPLVRVQC---LCLNFLCLID-GLCKISKLKIAREL 305
            + + +     M S +++     YF L+R      L  + L L   G+ K  +L     L
Sbjct: 619 QTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGL 678

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  + +   +PN  TY+ ++ G   DG+ +E     T  +   + +S  L  D+YT   L
Sbjct: 679 FDVMKKNEFLPNSGTYSSILEGFSEDGRTEEA----TSLVSLMKEDSISLNEDIYT--AL 732

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + CFCK  R    +V+   ++   F P  +++  L+  L
Sbjct: 733 VTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGL 771



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 136/317 (42%), Gaps = 26/317 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   ++  +     + +       + + +   GL P   T   +IN +CK GR+S    
Sbjct: 286 RPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALR 345

Query: 147 VLGRI-LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           VL  + LR C  P+  T+ +L++  C E ++ +A  L  K+R  G   D  TYN LI G 
Sbjct: 346 VLELMKLRGC-KPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQ 404

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C  GH   A  L   M  G+G        D  TY+ +I+ LCK+  +      +C + F 
Sbjct: 405 CIDGHIESAFRLLRLM-EGDGLIA-----DQYTYNALINALCKDGRTDQ----AC-SLFD 453

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           +L           ++   + F  LI+GLCK  K  IA +  + +  AG  P+  TY+  I
Sbjct: 454 SLETRG-------IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFI 506

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
             LC      + K  +        +    + P    Y I+I+   K          +G +
Sbjct: 507 EHLC------KMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEM 560

Query: 386 LPSCFTPDAVTFTSLIK 402
           + S   PD VT+T+ ++
Sbjct: 561 VSSGCNPDVVTYTTSMR 577



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 136/344 (39%), Gaps = 44/344 (12%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  +   F++  CK  G          E L     ML  +  +P   ++ I+   L K +
Sbjct: 498 DTYTYSSFIEHLCKMKGS--------QEGLSFIGEMLQ-KDVKPSTVNYTIVIHKLLKER 548

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
           +Y  V   +  +  +G  PD  TY   +  +C  GR++    VL  + ++  T D + + 
Sbjct: 549 NYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYN 608

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE----- 219
           +L+    +  +   A ++  ++       + FTY  L+  L R       L L       
Sbjct: 609 TLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWK 668

Query: 220 --EMANGNGEFGVVCE----PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
             E+ +  G F V+ +    P++ TYS+I++G  ++  +                     
Sbjct: 669 AIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSL--------------- 713

Query: 274 FPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
             L++   + LN   +  L+   CK  +   A  L  S+ + G +P +++Y  L+ GL  
Sbjct: 714 VSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLIC 773

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
           +GQ D+ K       +F         PD   + ++I+   K G 
Sbjct: 774 EGQTDKAKE------IFMNSRWKDYSPDEIVWKVIIDGLIKKGH 811



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)

Query: 101 AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 160
            +T+   +++SL K  +++ L  D YT   L+ CFCK  R    +V++  +++  F P  
Sbjct: 705 GRTEEATSLVSLMKEDSIS-LNEDIYT--ALVTCFCKSKRYLDAWVLVCSMIQHGFIPQL 761

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220
           +++  L+  L  E +  +A  +F   R      D   +  +I+GL + GH+ ++  +   
Sbjct: 762 MSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIM 821

Query: 221 MANGNGEFGVVCEPDAITYSTIIDGL 246
           +   N      C P   TY+ + + L
Sbjct: 822 LERMN------CRPSHQTYAMLTEEL 841



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 6/144 (4%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
           V  LF  +      P+  TY+ ++  F + GR      ++  +     + +   +T+L+ 
Sbjct: 675 VFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVT 734

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
             C   R ++A  L   +   G    + +Y  L++GL   G T  A  +F  M +   ++
Sbjct: 735 CFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIF--MNSRWKDY 792

Query: 229 GVVCEPDAITYSTIIDGLCKEAGS 252
                PD I +  IIDGL K+  S
Sbjct: 793 S----PDEIVWKVIIDGLIKKGHS 812


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 167/396 (42%), Gaps = 86/396 (21%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F+ ML +    P + +FN L   L +  H      L  ++   G+ P+ +T NI 
Sbjct: 199 EAHELFEEMLGLGIC-PDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIF 257

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  FC+   ++    +L  + R   TPD +T+ +LI  LC   +++EA     K+   G 
Sbjct: 258 IQGFCQRAMLNEAIRLLDGVGRG-LTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGY 316

Query: 192 ELDVFTYNT-----------------------------------LINGLCRTGHTIVALN 216
           E D FTYN+                                   LINGLC+ G    A+N
Sbjct: 317 EPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAIN 376

Query: 217 LFEE---------------MANGNGEFGVV--------------CEPDAITYSTIIDGLC 247
           +F E               +  G  + G++              C PD  TY+ +I+GLC
Sbjct: 377 VFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLC 436

Query: 248 KEAGSANFLGFSCMASFSALNKMA-FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
           K       +G    A    ++ +A  + P V        F  LIDG CK  KL  A E+ 
Sbjct: 437 K-------IGCVSDADNLVIDAIAKGHLPDV------FTFNTLIDGYCKKLKLDNAIEIV 483

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G+ P+V+TYN ++ GLC  G+      YE V   FK +   G  P++ TYNIL 
Sbjct: 484 DRMWNHGVSPDVITYNSILNGLCKAGK------YEDVMGTFKLMMEKGCVPNIITYNILT 537

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             FCK  +V     +   +     TPD V F +L+K
Sbjct: 538 ESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMK 573



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 144/307 (46%), Gaps = 38/307 (12%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  PD  TY  LIN  C+ G +     V    +     P+ V   +L+K L  +  I++A
Sbjct: 350 GFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQA 409

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL-FEEMANGNGEFGVVCEPDAIT 238
             L  ++   GC  D++TYN +INGLC+ G    A NL  + +A G+        PD  T
Sbjct: 410 LKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGH-------LPDVFT 462

Query: 239 YSTIIDGLCKEAGSANFL---------GFS--CMASFSALNK----------MAFYFPLV 277
           ++T+IDG CK+    N +         G S   +   S LN           M  +  ++
Sbjct: 463 FNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMM 522

Query: 278 RVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
              C+   + +  L +  CK  K++ A  L + +   GL P+VV +  L++G C++G +D
Sbjct: 523 EKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLD 582

Query: 336 ETKHYETVFLLFKRLNSTGLFPD-LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
                   + LFKR++    F   + TYNI+IN F     ++    +F ++  + F+PD+
Sbjct: 583 ------GAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDS 636

Query: 395 VTFTSLI 401
            T+  +I
Sbjct: 637 YTYRVMI 643



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 161/397 (40%), Gaps = 88/397 (22%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ VF+ M +     P V S+N +   L + +++D    ++ R+   G+ PD YT+ I
Sbjct: 93  QEAVDVFERM-DFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTI 151

Query: 131 LINCFCKMGR--------------------VSHGFVVLG---------------RILRSC 155
            +  FC+  R                    V++  V+ G                +L   
Sbjct: 152 RMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLG 211

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             PD + F  LI  LC +  + E+  L  K+   G   ++FT N  I G C+      A+
Sbjct: 212 ICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAI 271

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA--FY 273
            L + +  G         PD ITY+T+I GLCK         F  + +   L KM    Y
Sbjct: 272 RLLDGVGRG-------LTPDVITYNTLICGLCKN--------FKVVEAEHYLRKMVNEGY 316

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
            P          +  +IDG CK+  ++ A ++ +     G +P+  TY  LI GLC DG 
Sbjct: 317 EP------DGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGD 370

Query: 334 MD----------ETKHYETVFL---LFKRLNSTGLF----------------PDLYTYNI 364
           +D          E      + L   L K L+  GL                 PD++TYN+
Sbjct: 371 IDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNL 430

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +IN  CKIG VS    +    +     PD  TF +LI
Sbjct: 431 VINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLI 467



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 149/344 (43%), Gaps = 31/344 (9%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +GDI     + A+ VF+  +  +  +P +   N L   L++       L L   ++  G 
Sbjct: 368 DGDI-----DRAINVFNEAME-KGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGC 421

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD +TYN++IN  CK+G VS    ++   +     PD  TF +LI   C + ++  A  
Sbjct: 422 SPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIE 481

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +  ++   G   DV TYN+++NGLC+ G     +  F+ M     E G  C P+ ITY+ 
Sbjct: 482 IVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMM----EKG--CVPNIITYNI 535

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           + +  CK       L          L       P V      +NF  L+ G C    L  
Sbjct: 536 LTESFCKARKVEEALNLIEEMQNKGLT------PDV------VNFGTLMKGFCDNGDLDG 583

Query: 302 ARELFQSLPRA-GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
           A +LF+ +         + TYNI+I        M+  +       LF ++   G  PD Y
Sbjct: 584 AYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEK------LFNKMCENGFSPDSY 637

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           TY ++I+ FCK G ++SG+      +     P   TF  ++  L
Sbjct: 638 TYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCL 681



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 130/296 (43%), Gaps = 25/296 (8%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
            + +F+R++     P   +YN ++N   +         V  R+      PD  TFT  +K
Sbjct: 95  AVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIRMK 154

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
             C  SR   A  L   +   GCE     Y T+I G     H + A  LFEEM       
Sbjct: 155 SFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEM------L 208

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
           G+   PD + ++ +I  LC++             S   LNK+      V      +N   
Sbjct: 209 GLGICPDIMAFNKLIHTLCRKG--------HVQESERLLNKVLKRG--VSPNLFTVNI-- 256

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
            I G C+ + L  A  L   + R GL P+V+TYN LI GLC + ++ E +HY       +
Sbjct: 257 FIQGFCQRAMLNEAIRLLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAEHY------LR 309

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++ + G  PD +TYN +I+ +CK+G + +   I        F PD  T+ SLI  L
Sbjct: 310 KMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGL 365



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 125/309 (40%), Gaps = 23/309 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N++   L K        +L       G  PD +T+N LI+ +CK  ++ +   +
Sbjct: 423 PDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEI 482

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + R+     +PD +T+ S++  LC   +  +    F  +   GC  ++ TYN L    C+
Sbjct: 483 VDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCK 542

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 ALNL EEM N          PD + + T++ G C               ++   
Sbjct: 543 ARKVEEALNLIEEMQNKG------LTPDVVNFGTLMKGFCDNG--------DLDGAYQLF 588

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            ++   +           +  +I+       + +A +LF  +   G  P+  TY ++I G
Sbjct: 589 KRVDEQYKFSHT---IATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDG 645

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  G ++        FLL K     GL P L T+  ++NC C   RV     I   ++ 
Sbjct: 646 FCKTGNINSG----YSFLLVKI--EKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVH 699

Query: 388 SCFTPDAVT 396
               P+ V 
Sbjct: 700 KGIVPEVVN 708



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 108/280 (38%), Gaps = 45/280 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN L     K    D  + +  R+   G+ PD  TYN ++N  CK G+       
Sbjct: 458 PDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGT 517

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++     P+ +T+  L +  C   ++ EA  L  +++  G   DV  + TL+ G C 
Sbjct: 518 FKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCD 577

Query: 208 TG-------------------HTI----VALNLFEEMANGNGE---FGVVCE----PDAI 237
            G                   HTI    + +N F    N N     F  +CE    PD+ 
Sbjct: 578 NGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSY 637

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN----------FL 287
           TY  +IDG CK     +   F  +     L      F  V + CLCL            L
Sbjct: 638 TYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRV-LNCLCLKRRVHEAVGIIHL 696

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +  G+      ++   +F++  +    P +V  N++ +G
Sbjct: 697 MVHKGIVP----EVVNTIFEADKKEVAAPKIVVENLMKKG 732


>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
          Length = 844

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 151/344 (43%), Gaps = 53/344 (15%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDRYTYNILINCFCKMGRVSHGF 145
           +P V SFN L   L + K +D V  +FK      G+ P+ +T NIL+   CK   +    
Sbjct: 202 QPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAI 261

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            VL  +    F P+ VT+T+++    ++  ++ A  +F ++   G   D  TY  L++G 
Sbjct: 262 RVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGY 321

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G  + A+ + +EM           EP+ +TY  II+  CKE  S   L         
Sbjct: 322 CKKGRFMDAVKVMDEMEENR------VEPNDVTYGVIIEAYCKEKKSGEVLNL------- 368

Query: 266 ALNKM--AFYFPLVRVQCLCLNFLC-----------------------------LIDGLC 294
            L+ M    Y P   + C  ++ LC                             LI  LC
Sbjct: 369 -LDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLC 427

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K  K+  AR+LF    + G +P+ +TYN LI G+C  G++ E         L+  +   G
Sbjct: 428 KEGKVWEARKLFDEFEK-GSIPSTLTYNALIAGMCEGGELPEAAR------LWDNMVEKG 480

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
             P+ +TYN+LI  FCK+G    G  +   +L +   P+  T+ 
Sbjct: 481 CVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYA 524



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 26/251 (10%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VF  +L+ R   P  T++ IL     K   +   + +   +    + P+  TY ++I  +
Sbjct: 298 VFGEILD-RGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAY 356

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK  +      +L  +L   + P +     +I  LC E ++  A  L+ KL    C  D 
Sbjct: 357 CKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDN 416

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
              +TLI+ LC+ G    A  LF+E   G+        P  +TY+ +I G+C E G    
Sbjct: 417 AITSTLIHWLCKEGKVWEARKLFDEFEKGS-------IPSTLTYNALIAGMC-EGGE--- 465

Query: 256 LGFSCMASFSALNKMA-FYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                      L + A  +  +V   C+     +  LI G CK+   +    + + +   
Sbjct: 466 -----------LPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDN 514

Query: 313 GLMPNVVTYNI 323
           G +PN  TY I
Sbjct: 515 GCLPNKATYAI 525



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 58/240 (24%)

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
           F ++I++     R   A   F ++  FG +  V ++NTL+N L +     +   +F+   
Sbjct: 173 FITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFK--- 229

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
           N   +FG+V  P+  T + ++  LCK+                                 
Sbjct: 230 NCRKKFGIV--PNVFTCNILVKALCKK--------------------------------- 254

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
                         + +  A  + + +P  G +PNVVTY  ++ G  + G M   +    
Sbjct: 255 --------------NDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARR--- 297

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
              +F  +   G  PD  TY IL++ +CK GR      +   +  +   P+ VT+  +I+
Sbjct: 298 ---VFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIE 354



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 88/202 (43%), Gaps = 23/202 (11%)

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           +++ + R  +  +AL +F+     +  F    E    TY  +I+ L K            
Sbjct: 104 VVSMISRQQNLDLALQIFDHAGKFHRNFAHNYE----TYLAMIEKLSK------------ 147

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             +F  +  +       +++C    F+ +I       + K+A   F  +P  GL P+V +
Sbjct: 148 ARAFEPMETLISQLHKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRS 207

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNST-GLFPDLYTYNILINCFCKIGRVSSGF 379
           +N L+  L       + K ++ V L+FK      G+ P+++T NIL+   CK   + +  
Sbjct: 208 FNTLLNTLV------QNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAI 261

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +   +    F P+ VT+T+++
Sbjct: 262 RVLEEMPAMGFIPNVVTYTTIL 283



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD     + S P   ++N L   + +         L+  +   G  P+ +TYN+L
Sbjct: 434 EARKLFDEF--EKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNML 491

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
           I  FCK+G    G  V+  +L +   P+  T+ 
Sbjct: 492 IKGFCKVGNAREGIRVMEEMLDNGCLPNKATYA 524


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 135/311 (43%), Gaps = 28/311 (9%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N L   L + +  + ++ +F+R+      P+  +Y  L+   C+ G++      +  + R
Sbjct: 4   NALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAR 63

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
               PD  T+  +I  LC   RI  A   F  +     E DV TYNTL+ GLC+ G    
Sbjct: 64  EKLVPDVFTYNVVIDTLCKARRISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRVAQ 119

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
           A +LF  M       G    P  +TY+T+ID  CK            M  F     +   
Sbjct: 120 ACSLFGSME------GAGITPSDVTYTTLIDVFCK------------MCQFETAYGLLQL 161

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
               +      ++  +I+GLCK  K+  A +LF+ +  AG  P+ VTYN LI GLC   +
Sbjct: 162 MASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQR 221

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           + E K   TV +        G  PD  T+  LI   C   R+   FV+F  +      PD
Sbjct: 222 LHEAKDLLTVMV------ENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPD 275

Query: 394 AVTFTSLIKIL 404
            VT T L+  L
Sbjct: 276 LVTHTVLVSKL 286



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 151/339 (44%), Gaps = 41/339 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L G L K        SLF  +   G+ P   TY  LI+ FCKM +    + +
Sbjct: 99  PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGL 158

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +     +P   ++ S+I  LC   ++ +A  LF ++++ GC+ D  TYNTLI+GLC 
Sbjct: 159 LQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCV 218

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-----KEAGSANFLGFSCMA 262
                 A +L   M   NG      +PD IT++ +I+GLC     KEA    F+ F  MA
Sbjct: 219 KQRLHEAKDLLTVMVE-NG-----FQPDKITFTALIEGLCTTDRIKEA----FVLFQGMA 268

Query: 263 SFSALNKMAFYFPLVRVQCL--------------------CLNFLCLIDGLCKISKLKIA 302
                  +  +  LV   C+                     + +  +   L +      A
Sbjct: 269 KQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRA 328

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
             L Q + R G+ PNVVTY    +GL       + K     +  F+R+   G+ PD+  Y
Sbjct: 329 ARLLQKMARRGVPPNVVTYTAFFKGL------GDWKEGMRAYREFRRMLEQGIEPDMVAY 382

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N+L++ FCK  R+     +   +  S   P+ VT+ +L+
Sbjct: 383 NVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLV 421



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 160/366 (43%), Gaps = 43/366 (11%)

Query: 53  LKERCKSSGEGDITSITPNEA-----------LCVFDY---MLNMRPSR---PPVTSFNI 95
           + + C   G  +   ITP++            +C F+    +L +  SR   P V S+  
Sbjct: 117 VAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCS 176

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
           +   L K +  D    LF+ + L G  PDR TYN LI+  C   R+     +L  ++ + 
Sbjct: 177 IINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENG 236

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           F PD +TFT+LI+ LC   RI EA  LF  +   GC  D+ T+  L++ LC       AL
Sbjct: 237 FQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPAL 296

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
           ++              C    I Y+ I     +E G     GF   A    L KMA    
Sbjct: 297 SVVRNYP--------ACPEAVILYTPIF----RELGRRR--GFDRAARL--LQKMARRGV 340

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
              V    + +     GL    +   A   F+ +   G+ P++V YN+L+ G C   ++D
Sbjct: 341 PPNV----VTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLD 396

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
             +       + + ++ +GL P++ TYN L+   C+ G+V +   +   ++     PD  
Sbjct: 397 MAEK------MVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVA 450

Query: 396 TFTSLI 401
           T+++L+
Sbjct: 451 TWSTLV 456



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 138/315 (43%), Gaps = 31/315 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   S+  L   L +T   D   S    +    L PD +TYN++I+  CK  R+S    
Sbjct: 32  KPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAI- 90

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
                  +   PD VT+ +L+  LC   R+ +A +LF  +   G      TY TLI+  C
Sbjct: 91  ---EFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFC 147

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      A  L + MA+        C P   +Y +II+GLCK              ++  
Sbjct: 148 KMCQFETAYGLLQLMASRK------CSPTVYSYCSIINGLCKNRKVDQ--------AYQL 193

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +M     L   +   + +  LI GLC   +L  A++L   +   G  P+ +T+  LI 
Sbjct: 194 FEEMK----LAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIE 249

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC   ++ E       F+LF+ +   G  PDL T+ +L++  C + ++     +  R  
Sbjct: 250 GLCTTDRIKEA------FVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVV-RNY 302

Query: 387 PSCFTPDAVTFTSLI 401
           P+C  P+AV   + I
Sbjct: 303 PAC--PEAVILYTPI 315



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++   F  L   K        F+R+   G+ PD   YN+L++ FCK  R+     +
Sbjct: 342 PNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKM 401

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  + +S   P+ VT+ +L+   C + ++     L   +   G + DV T++TL+ GL  
Sbjct: 402 VRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFM 461

Query: 208 TGHTIVALNLFEEMANGNG 226
            G    A + F  +A   G
Sbjct: 462 VGQADAAYS-FLNLAMSQG 479



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 14/179 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  +  +F  L + + +D    L +++   G+ P+  TY                +    
Sbjct: 309 VILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFR 368

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R+L     PD V +  L+   C   R+  A  +   +   G   ++ TYNTL+   CR G
Sbjct: 369 RMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKG 428

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                  L   M +   +      PD  T+ST++ GL        F+     A++S LN
Sbjct: 429 KVEAIGELLHTMVSRGRQ------PDVATWSTLVAGL--------FMVGQADAAYSFLN 473


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 165/386 (42%), Gaps = 59/386 (15%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD ML+  PS P V +++ +   L+KT+  D    +F R+   G+ PD   Y  
Sbjct: 225 DKAYSLFDAMLDRGPS-PDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTS 283

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +C  G+      +  ++ R    PD VT+T+L+  LC   +  EA  +F  L   G
Sbjct: 284 LVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRG 343

Query: 191 CELDVFTYNTLINGLCRTG-----HTIVALNLFEEMANGNGEFGVVC------------- 232
            + D  TY TL++G    G     H ++ L + + M  G+  F ++              
Sbjct: 344 HKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEAL 403

Query: 233 -----------EPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQ 280
                       PD + Y T++D LC      + L  F+ + S      +  +  L+   
Sbjct: 404 LVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGL 463

Query: 281 CLCLNF--------------LCL--------IDGLCKISKLKIARELFQSLPRAGLMPNV 318
           C C  +              +CL        +  LCK  ++  A+ LF  + R G+ PN 
Sbjct: 464 CTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNT 523

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
            TYN LI G C DG+MDE      V +        G+ P   TYN +IN + + GR+  G
Sbjct: 524 NTYNTLIDGYCLDGKMDEAMKLLGVMVF------NGVKPSDVTYNTIINGYSQNGRIEDG 577

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKIL 404
             +   +      P  VT+  L++ L
Sbjct: 578 LTLLREMDGKGVNPGIVTYEMLLQGL 603



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 160/352 (45%), Gaps = 31/352 (8%)

Query: 55  ERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFK 114
           +R K  G    T   P +A  VFD +L  R  R  +   N     +A+       +SLF 
Sbjct: 30  KRTKQGGRQRATE--PGDAHQVFDRLLK-RGDRASIFDLNRALSDVARASPA-VAISLFN 85

Query: 115 RL---NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF--TPDAVTFTSLIKD 169
           R+     T   P+  TY I+I C  ++GR+   F  +GR++ +     P+ +  +S    
Sbjct: 86  RMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRHEPNPLQSSSQGPL 145

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
             A  R M    +  ++   GC+ D+F+Y  L+ GLC    +  AL+L   MA+  G   
Sbjct: 146 CTAGGRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGR-- 203

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCL 289
             C  D + Y+T+I+GL +E             ++S  + M    P   V    + +  +
Sbjct: 204 --CPLDVVAYTTVINGLLREG--------QLDKAYSLFDAMLDRGPSPDV----VTYSSI 249

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           I  L K   +  A ++F  + + G+MP+ + Y  L+ G C+ G+  E         +FK+
Sbjct: 250 ISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKE------AIGIFKK 303

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +   G+ PD+ TY  L++  CK G+ +    IF  ++     PD+ T+ +L+
Sbjct: 304 MCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLL 355



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 163/386 (42%), Gaps = 59/386 (15%)

Query: 69  TPNEALCVFDYMLNMRPSRP-PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYT 127
           T  +AL +   M + +   P  V ++  +   L +    D   SLF  +   G  PD  T
Sbjct: 186 TSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVT 245

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           Y+ +I+   K   +     V  R++++   PD + +TSL+   C+  +  EA  +F K+ 
Sbjct: 246 YSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMC 305

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G E DV TY  L++ LC+ G +  A  +F+ +    G      +PD+ TY T++ G  
Sbjct: 306 RHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVK-RGH-----KPDSTTYGTLLHGYA 359

Query: 248 KEAGSANF-------------LGFS----CMASFSALNKMA---FYFPLVRVQCL---CL 284
            E                   LG       M +++  NK+      F  +R Q L    +
Sbjct: 360 TEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIV 419

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH----- 339
           N+  ++D LC   ++  A   F SL   GL PN+V +  LI GLC   + D+ +      
Sbjct: 420 NYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEM 479

Query: 340 ------YETVFL------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
                  +T+F                   LF  +   G+ P+  TYN LI+ +C  G++
Sbjct: 480 IDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKM 539

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
                + G ++ +   P  VT+ ++I
Sbjct: 540 DEAMKLLGVMVFNGVKPSDVTYNTII 565



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 18/241 (7%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FN++ G  AK    D  L +F  +   GL PD   Y  +++  C  GRV         + 
Sbjct: 386 FNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLK 445

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                P+ V FT+LI  LC   +  +   L  ++   G  LD   +N ++  LC+ G  I
Sbjct: 446 SEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVI 505

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A NLF+ M        +  EP+  TY+T+IDG C +      +    +  F+       
Sbjct: 506 EAKNLFDLMVR------IGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNG------ 553

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                 V+   + +  +I+G  +  +++    L + +   G+ P +VTY +L++GL   G
Sbjct: 554 ------VKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAG 607

Query: 333 Q 333
           +
Sbjct: 608 R 608



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FN + G L K        +LF  +   G+ P+  TYN LI+ +C  G++     +LG ++
Sbjct: 491 FNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMV 550

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            +   P  VT+ ++I       RI +   L  ++   G    + TY  L+ GL + G T+
Sbjct: 551 FNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTV 610

Query: 213 VALNLFEEM 221
            A  L+  M
Sbjct: 611 AAKELYLRM 619



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 1/115 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD M+ +    P   ++N L          D  + L   +   G+ P   TYN +
Sbjct: 506 EAKNLFDLMVRI-GIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTI 564

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           IN + + GR+  G  +L  +      P  VT+  L++ L    R + A  L+ ++
Sbjct: 565 INGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRM 619


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 147/329 (44%), Gaps = 30/329 (9%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VFD ML+ R   P  TS+ ++     +      V    K +   G   D  T  ++I+ F
Sbjct: 215 VFDEMLD-RAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTF 273

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            + G V+  F    + ++    P+ + F+SLI  LC    I +A  +  ++   G + +V
Sbjct: 274 SEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNV 333

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           +T+  LI+GLC+ G T  A  LF ++   +       +P+  TY+ +I+G CKE      
Sbjct: 334 YTHTALIDGLCKKGWTEKAFRLFLKLVRSDNY-----KPNVYTYTCMINGYCKE------ 382

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRA 312
                      LN+       ++ Q L  N   + CLIDG CK      A EL   + + 
Sbjct: 383 ---------EKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKE 433

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  PN+ TYN +I GLC  G+  E       + L +R   +GL  D  TY ILI+ FC+ 
Sbjct: 434 GFTPNIFTYNAIIDGLCKKGRFPE------AYKLLRRGLKSGLHADKVTYTILISEFCRQ 487

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                   IF R+      PD  T+  LI
Sbjct: 488 TDNKQALAIFSRMFKVGLQPDMHTYNVLI 516



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 135/312 (43%), Gaps = 27/312 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  L     K  ++     L   +   G  P+ +TYN +I+  CK GR    + +
Sbjct: 402 PNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKL 461

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L R L+S    D VT+T LI + C ++   +A A+F+++   G + D+ TYN LI   CR
Sbjct: 462 LRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCR 521

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 +  LFEE        G+   P   TY+++I G C++   ++ + F         
Sbjct: 522 QKKVEESEKLFEEAV------GLGLLPTKETYTSMICGYCRDGHISSAIKF--------F 567

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +KM  Y      +   + +  LI GLC  SKL  A +L++++   GL P  VT   L   
Sbjct: 568 HKMRDY----GCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYE 623

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  G         T  ++ +RL        + T N LI   C   +V    + F ++L 
Sbjct: 624 YCKQGDS------ATAMIILERLEKKLW---IRTVNTLIRKLCSEKKVGVAALFFHKLLD 674

Query: 388 SCFTPDAVTFTS 399
                D +T  +
Sbjct: 675 KDLNVDRITLAA 686



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 128/300 (42%), Gaps = 26/300 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++  +     K +  +    L  R+   GL P+  TY  LI+  CK G     + 
Sbjct: 366 KPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYE 425

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  + +  FTP+  T+ ++I  LC + R  EA  L  +    G   D  TY  LI+  C
Sbjct: 426 LMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFC 485

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R      AL +F  M      F V  +PD  TY+ +I   C++           +     
Sbjct: 486 RQTDNKQALAIFSRM------FKVGLQPDMHTYNVLIATFCRQKK---------VEESEK 530

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L + A    L+  +    + +C   G C+   +  A + F  +   G  P+ +TY  LI 
Sbjct: 531 LFEEAVGLGLLPTKETYTSMIC---GYCRDGHISSAIKFFHKMRDYGCKPDSITYGALIS 587

Query: 327 GLCNDGQMDET-KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           GLCN+ ++DE  + YET+          GL P   T   L   +CK G  ++  +I  R+
Sbjct: 588 GLCNESKLDEACQLYETMI-------DNGLSPCEVTRVTLAYEYCKQGDSATAMIILERL 640



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 153/354 (43%), Gaps = 37/354 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A   F   + M  + P + +F+ L   L K         + + +   G  P+ YT+  
Sbjct: 280 NRAFWYFKKWVQMGLN-PNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTA 338

Query: 131 LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           LI+  CK G     F +  +++RS  + P+  T+T +I   C E ++  A  L  +++  
Sbjct: 339 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQ 398

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +  TY  LI+G C+ G+   A  L + M    G+ G    P+  TY+ IIDGLCK+
Sbjct: 399 GLVPNTNTYTCLIDGHCKAGNFGRAYELMDLM----GKEGFT--PNIFTYNAIIDGLCKK 452

Query: 250 AG----------------SANFLGFSCMAS---FSALNK--MAFYFPLVRV--QCLCLNF 286
                              A+ + ++ + S       NK  +A +  + +V  Q     +
Sbjct: 453 GRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTY 512

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LI   C+  K++ + +LF+     GL+P   TY  +I G C DG      H  +    
Sbjct: 513 NVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDG------HISSAIKF 566

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           F ++   G  PD  TY  LI+  C   ++     ++  ++ +  +P  VT  +L
Sbjct: 567 FHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTL 620



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 31/147 (21%)

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY--- 340
           LNF+  ID    +  +  A ++F  +    ++P+  +Y +++ G C  G++ +   +   
Sbjct: 196 LNFV--IDVALALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKD 253

Query: 341 --------------------------ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
                                        F  FK+    GL P+L  ++ LIN  CKIG 
Sbjct: 254 MIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGS 313

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +   F +   ++   + P+  T T+LI
Sbjct: 314 IKQAFEMLEEMVRKGWKPNVYTHTALI 340


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 160/334 (47%), Gaps = 25/334 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
             AL VF+ M   R S P V ++  L   L K+   +  + LF R+   GL P+  TY  
Sbjct: 229 EHALKVFEGMDGNRCS-PNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTA 287

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   C  G +   F +L  +  +   P+  TF+ LI  LC   ++ EA      L   G
Sbjct: 288 LIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKG 347

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +++   Y +LI+GLC+TG    A  L ++M +     G V  PDA +YS++IDGLC++ 
Sbjct: 348 VKVNEVVYTSLIDGLCKTGKIDAADELMQKMISE----GFV--PDAHSYSSLIDGLCRQ- 400

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                         S    M        +Q   + +  +ID L +    +  +++F  + 
Sbjct: 401 -----------KKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMI 449

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P++VTY + +R  C +G+M++ +       +  ++   G+FP+L TYN LI  + 
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAES------MIVQMVDRGVFPNLVTYNTLIRGYA 503

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +G VS  F  F  ++   + P+  ++T L++++
Sbjct: 504 NLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLV 537



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 150/338 (44%), Gaps = 41/338 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           PP+   N L   LA+ + +  + SL  R+    L     TY  LIN +C  G +      
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPARNL----RTYTTLINAYCLAGDIPAAKQH 94

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L +   PD+  +TS +   C    +  A  +F  + + GC    FTY  L++GL  
Sbjct: 95  LTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLG 154

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL----------G 257
            G    A+ +F  M   +      C PD   Y+T++ GLC EAG               G
Sbjct: 155 AGMVREAMAVFVGMRADS------CAPDTHVYATMVHGLC-EAGRTEEAEVLLEEAMSNG 207

Query: 258 FS-CMASFSAL-----NKMAFYFPLVRVQCLCLN--------FLCLIDGLCKISKLKIAR 303
           F   +  ++AL     N       L   + +  N        +  LI GLCK  K++ A 
Sbjct: 208 FEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAM 267

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            LF  +  AGL PNVVTY  LI+G CN+G      H +  F L   + + GL P+ +T++
Sbjct: 268 VLFSRMVEAGLEPNVVTYTALIQGQCNEG------HLQCAFRLLHLMETNGLVPNDWTFS 321

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +LI+  CK  +V    +  G ++      + V +TSLI
Sbjct: 322 VLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLI 359



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 137/315 (43%), Gaps = 53/315 (16%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  P+   YN LI+ +C  G + H   V   +  +  +P+  T+T LI  LC   ++  A
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             LF+++   G E +V TY  LI G C  GH   A  L   M       G+V  P+  T+
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETN----GLV--PNDWTF 320

Query: 240 STIIDGLCKEAGSAN---FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           S +ID LCK         FLG S +     +N++               +  LIDGLCK 
Sbjct: 321 SVLIDALCKREKVEEAQLFLG-SLVKKGVKVNEVV--------------YTSLIDGLCKT 365

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK------------------ 338
            K+  A EL Q +   G +P+  +Y+ LI GLC   ++ +                    
Sbjct: 366 GKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTY 425

Query: 339 -----------HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
                        E    +F ++ +TG+ PD+ TY + +  +C+ GR+     +  +++ 
Sbjct: 426 TIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVD 485

Query: 388 SCFTPDAVTFTSLIK 402
               P+ VT+ +LI+
Sbjct: 486 RGVFPNLVTYNTLIR 500



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 30/298 (10%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           +++F  +      PD + Y  +++  C+ GR     V+L   + + F P+ V + +LI  
Sbjct: 162 MAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDG 221

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
            C    +  A  +F  +    C  +V TY  LI+GLC++G    A+ LF  M     E G
Sbjct: 222 YCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMV----EAG 277

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---F 286
           +  EP+ +TY+ +I G C E          C  +F  L+       L+    L  N   F
Sbjct: 278 L--EPNVVTYTALIQGQCNEG------HLQC--AFRLLH-------LMETNGLVPNDWTF 320

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LID LCK  K++ A+    SL + G+  N V Y  LI GLC  G++D          L
Sbjct: 321 SVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADE------L 374

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +++ S G  PD ++Y+ LI+  C+  ++S   ++   ++        VT+T +I  L
Sbjct: 375 MQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 138/344 (40%), Gaps = 47/344 (13%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL---- 148
           +  L   L KT   D    L +++   G  PD ++Y+ LI+  C+  ++S   ++L    
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414

Query: 149 -------------------------------GRILRSCFTPDAVTFTSLIKDLCAESRIM 177
                                           +++ +   PD VT+T  ++  C E R+ 
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRME 474

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           +A ++  ++   G   ++ TYNTLI G    G    A + FE M  G G      +P+  
Sbjct: 475 DAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMV-GKG-----WKPNED 528

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           +Y+ ++  + K++ S N +    +A    L  +       ++      + C I  LC++ 
Sbjct: 529 SYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVD 588

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           +L+ A+  F  +  A L P+   Y  +I   C        K       L   +  +G  P
Sbjct: 589 RLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCR------LKILTDALTLLDSMTKSGYLP 642

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            L +Y I+I+  C+ G   +   +FG +L      D + +  LI
Sbjct: 643 HLESYRIIISSLCEGGNFRTAKEVFGDLLLKESNYDEIVWKILI 686



 Score = 45.4 bits (106), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 66/182 (36%), Gaps = 14/182 (7%)

Query: 28  NEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSR 87
           NE SY   T  LRL VK           +  S    DI  I   + L V    +  R   
Sbjct: 526 NEDSY---TVLLRLVVK-----------KSSSDNSVDIWKIADMKDLQVLLEDITERQLP 571

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
                ++    CL +    +     F  +    L P    Y  +I+C C++  ++    +
Sbjct: 572 LAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTL 631

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  + +S + P   ++  +I  LC       A  +F  L +     D   +  LI GL +
Sbjct: 632 LDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKESNYDEIVWKILIYGLLQ 691

Query: 208 TG 209
            G
Sbjct: 692 KG 693


>gi|255660956|gb|ACU25647.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 376

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/316 (29%), Positives = 151/316 (47%), Gaps = 24/316 (7%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
            V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK G       VL
Sbjct: 58  SVSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYSDKSLHVL 117

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
               +     DA  ++++I  LC E+ +  A  +   +   GC+ +V  YNTLINGL   
Sbjct: 118 EMAEQKGGVLDAFAYSAMINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGA 177

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                A+ +F EM        + C P  ITY+T+I+GLCK        G +       L+
Sbjct: 178 SKFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKN----EMFGEAYNLVKELLD 227

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
           K         +    + +  L+ GLC   K++ A +L+  +   G  P+V  +NILI GL
Sbjct: 228 K--------GLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGL 279

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C+ G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+ RIL +
Sbjct: 280 CSVGKM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRN 333

Query: 389 CFTPDAVTFTSLIKIL 404
              PD +++   +K L
Sbjct: 334 GLEPDIISYNITLKGL 349



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 145/326 (44%), Gaps = 34/326 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K  + D  L + +     G   D + Y+ 
Sbjct: 76  DEVISIWELMKESGFVEDSIT-YGILVHGFCKNGYSDKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+   + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A NL +E+ +         +P  ITYS ++ GLC + 
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKG------LDPGVITYSMLMKGLCLDH 248

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L       ++ +    F  P V++  +      LI GLC + K+++A  L+  + 
Sbjct: 249 KVERALQL-----WNQVTSKGFK-PDVQMHNI------LIHGLCSVGKMQLALSLYFDMN 296

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R    PN+V++N L+ G   DG +          +++ R+   GL PD+ +YNI +   C
Sbjct: 297 RWKCAPNLVSHNTLMEGFYKDGDI------RNALVIWARILRNGLEPDIISYNITLKGLC 350

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVT 396
              R+S   +         F  DAVT
Sbjct: 351 SCNRISDAIL---------FLHDAVT 367



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 7/113 (6%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++G  +++K+K   EL++ +   G   +V ++NI++RGL ++G++DE      V  +++
Sbjct: 31  MLNGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNIMMRGLFDNGKVDE------VISIWE 83

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +  +G   D  TY IL++ FCK G       +           DA  ++++I
Sbjct: 84  LMKESGFVEDSITYGILVHGFCKNGYSDKSLHVLEMAEQKGGVLDAFAYSAMI 136



 Score = 44.7 bits (104), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 52/277 (18%), Positives = 98/277 (35%), Gaps = 60/277 (21%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV   +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVCNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     ++++E M     E G V   D+ITY                
Sbjct: 60  SSFNIMMRGLFDNGKVDEVISIWELMK----ESGFV--EDSITYGI-------------- 99

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                                            L+ G CK      +  + +   + G +
Sbjct: 100 ---------------------------------LVHGFCKNGYSDKSLHVLEMAEQKGGV 126

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            +   Y+ +I GLC +  +D          +   +  +G  P+++ YN LIN      + 
Sbjct: 127 LDAFAYSAMINGLCKEANLDRA------LYVLNGMIKSGCKPNVHVYNTLINGLVGASKF 180

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                +F  +     +P  +T+ +LI  L  N  F +
Sbjct: 181 EDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGE 217


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 148/314 (47%), Gaps = 24/314 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V S+N L   LA+    D +  ++  +    + P+ YT N ++N + KMG +    + + 
Sbjct: 179 VRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVS 238

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           +I ++  +PD+ T+TSLI   C  + +  A  +F  +   GC  +  +Y T+I+GLC  G
Sbjct: 239 KIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAG 298

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
                ++LF++M   +      C P   TY+ II  L       N      M  F+ + +
Sbjct: 299 RIDEGISLFKKMREDD------CYPTVRTYTVIIHALF-----GNDRNLEGMDLFNEMRE 347

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
            +   P V        +  ++D +CK  KL  +R +   +   GL+P+VVTYN LIRG C
Sbjct: 348 RSCE-PNVHT------YTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYC 400

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
            +G++      E    +   + S    P+  TYN LI  F K   V     +  ++L S 
Sbjct: 401 EEGRI------EAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESK 454

Query: 390 FTPDAVTFTSLIKI 403
            TP  VT+ SLI +
Sbjct: 455 LTPSLVTYNSLIHV 468



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 140/315 (44%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   ++N L    +K KH    ++L  ++  + L P   TYN LI+  CK G     + 
Sbjct: 421 RPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYK 480

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +  +   PD  T++  I  LC   R+ EA  LF  L+  G + +   Y  LI+G C
Sbjct: 481 LLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHC 540

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A++L E M + +      C P++ TY+++I G+CKE       G S + + S 
Sbjct: 541 KAGKIDEAISLLERMHSED------CLPNSSTYNSLIYGVCKEGKVQE--GLSMVENMSK 592

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +           V+     +  LI+ + +      A  +F  +   G  P+V TY   I 
Sbjct: 593 MG----------VKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIH 642

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             C  G + E +       +  R+   G+ PD  TY +LI+ + ++G     F +  R+L
Sbjct: 643 TYCTSGNVKEAEG------MMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRML 696

Query: 387 PSCFTPDAVTFTSLI 401
            +   P    + +LI
Sbjct: 697 DAGCDPSHPIWNNLI 711



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 157/363 (43%), Gaps = 48/363 (13%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           E + +F+ M   R   P V ++ ++   + K +  D    +   +   GL P   TYN L
Sbjct: 337 EGMDLFNEMRE-RSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNAL 395

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  +C+ GR+     +LG +  +   P+  T+  LI        + +A  L +K+     
Sbjct: 396 IRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKL 455

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              + TYN+LI+  C+ GH   A  L + +     E G+V  PD  TYS  ID LCK   
Sbjct: 456 TPSLVTYNSLIHVQCKAGHFDSAYKLLDLLK----ENGLV--PDQWTYSVFIDTLCK--- 506

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            +  +  +C   F++L +         ++   + +  LIDG CK  K+  A  L + +  
Sbjct: 507 -SKRMEEAC-DLFNSLKEKG-------IKANEVMYTALIDGHCKAGKIDEAISLLERMHS 557

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDE-----------------------------TKHYET 342
              +PN  TYN LI G+C +G++ E                                ++ 
Sbjct: 558 EDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDH 617

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
              +F ++ S G  PD+YTY   I+ +C  G V     +  R++ +   PD++T+T LI 
Sbjct: 618 ANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLIS 677

Query: 403 ILE 405
             E
Sbjct: 678 AYE 680



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 146/355 (41%), Gaps = 36/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A  VF+ M N    R  V+   I+ G L +    D  +SLFK++     +P   TY +
Sbjct: 266 NSAYKVFNMMPNKGCRRNEVSYTTIIHG-LCEAGRIDEGISLFKKMREDDCYPTVRTYTV 324

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+      R   G  +   +      P+  T+T ++  +C E ++ E+  +  ++   G
Sbjct: 325 IIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKG 384

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
               V TYN LI G C  G    AL +   M + N      C P+  TY+ +I G  K  
Sbjct: 385 LVPSVVTYNALIRGYCEEGRIEAALEILGLMESNN------CRPNERTYNELICGFSKRK 438

Query: 251 GSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNF----------------------L 287
                +   S M        +  Y  L+ VQC   +F                       
Sbjct: 439 HVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYS 498

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
             ID LCK  +++ A +LF SL   G+  N V Y  LI G C  G++DE         L 
Sbjct: 499 VFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEA------ISLL 552

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +R++S    P+  TYN LI   CK G+V  G  +   +      P   T+T LI+
Sbjct: 553 ERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIE 607



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++   K+  +  A      + +AGL P+  TY  LI G C +  ++      + + +F 
Sbjct: 220 MVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVN------SAYKVFN 273

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            + + G   +  +Y  +I+  C+ GR+  G  +F ++      P   T+T +I  L
Sbjct: 274 MMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL 329


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 147/308 (47%), Gaps = 29/308 (9%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDR 125
           S+ P  AL + D + +     P   S+N +    A+   +  VLSL++R+ +   + P  
Sbjct: 113 SLAPGRALHLLDQLPHRFAVSPSFRSYNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTT 172

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           +T++I     C++GR      +L  + R    PD V + ++I  LCA+  + EAA L  +
Sbjct: 173 FTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDE 232

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           + + GC  DV T+N +++GLC  G    A  L + M          C P+AITY  ++ G
Sbjct: 233 MFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRG------CVPNAITYGFLLKG 286

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           LC  +        + +     LN + F   + R         CL+DG     KLK A EL
Sbjct: 287 LCLASQVEE--ARTMLGRVPELNVVLFNTVIGR---------CLLDG-----KLKEAAEL 330

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           ++++   G  P+  TY+ILI GLC  G++       +   L + +   G  P + TY IL
Sbjct: 331 YETMGSKGCPPDAHTYSILIHGLCKLGRLG------SAMKLLREMEDKGFAPSIVTYTIL 384

Query: 366 INCFCKIG 373
           ++ FC+ G
Sbjct: 385 LHSFCRNG 392



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 149/316 (47%), Gaps = 26/316 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++ IL     +   +D + ++ + ++  GL  +   YN +I   CK  R+      
Sbjct: 376 PSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRF 435

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +    + PD  T+ ++I  LC  +++ EA  LF  L   G   +  TYNTLI+ L R
Sbjct: 436 MQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLR 495

Query: 208 TGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            G    A++L  +M  +G       C  D ++Y+ +I  LC++             S   
Sbjct: 496 NGSWQDAISLANDMVLHG-------CSLDIVSYNGLIKALCRDGNVDR--------SIML 540

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L++MA       ++   +++  LI  LCK  +++ A EL + +    L P++VTYN LI 
Sbjct: 541 LSEMAEKG----IKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLIN 596

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G M           L ++L++  +  D+ TYNILI+  CK   +    ++  R +
Sbjct: 597 GLCKMGWM------HAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAV 650

Query: 387 PSCFTPDAVTFTSLIK 402
            S  TP+  T+  +++
Sbjct: 651 TSGITPNERTWGIMVQ 666



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 163/417 (39%), Gaps = 91/417 (21%)

Query: 72  EALCVFDYMLNMRPSRPPVT-SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + L ++  M++ R   PP T +F+I    L +    D  L++ + +   G  PD   Y  
Sbjct: 154 DVLSLYRRMVH-RDRVPPTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQT 212

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  C  G V+    +L  +     + D  TF  ++  LC   R+ EAA L  ++ + G
Sbjct: 213 VIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRG 272

Query: 191 CELDVFTYNTLINGLC--------RT-----------------------GHTIVALNLFE 219
           C  +  TY  L+ GLC        RT                       G    A  L+E
Sbjct: 273 CVPNAITYGFLLKGLCLASQVEEARTMLGRVPELNVVLFNTVIGRCLLDGKLKEAAELYE 332

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFL-------GFS--------CMA 262
            M    G  G  C PDA TYS +I GLCK    GSA  L       GF+         + 
Sbjct: 333 TM----GSKG--CPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLH 386

Query: 263 SF---SALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
           SF      + +     ++  + L +N   +  +I  +CK  ++  A    Q +   G  P
Sbjct: 387 SFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKP 446

Query: 317 NVVTYNILIRGLCNDGQMDETKH----------------YETVFLLFKRLNST------- 353
           ++ TYN +I  LCN+ QM+E ++                Y T+     R  S        
Sbjct: 447 DICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLA 506

Query: 354 ------GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                 G   D+ +YN LI   C+ G V    ++   +      P+ V++  LI  L
Sbjct: 507 NDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISEL 563



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 53/121 (43%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   S+N+L   L KT+     L L K +    L PD  TYN LIN  CKMG +     
Sbjct: 550 KPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALN 609

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L ++       D +T+  LI   C    + +A+ L  +    G   +  T+  ++    
Sbjct: 610 LLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPNERTWGIMVQNFV 669

Query: 207 R 207
           R
Sbjct: 670 R 670



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 1/103 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL +   MLN   + P + ++N L   L K       L+L ++L+   +  D  TYNIL
Sbjct: 571 DALELSKEMLNQELT-PDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNIL 629

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174
           I+  CK   +    ++L R + S  TP+  T+  ++++   +S
Sbjct: 630 ISWHCKARLLHDASMLLNRAVTSGITPNERTWGIMVQNFVRKS 672


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 165/386 (42%), Gaps = 59/386 (15%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD ML+  PS P V +++ +   L+KT+  D    +F R+   G+ PD   Y  
Sbjct: 224 DKAYSLFDAMLDRGPS-PDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTS 282

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +C  G+      +  ++ R    PD VT+T+L+  LC   +  EA  +F  L   G
Sbjct: 283 LVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRG 342

Query: 191 CELDVFTYNTLINGLCRTG-----HTIVALNLFEEMANGNGEFGVVC------------- 232
            + D  TY TL++G    G     H ++ L + + M  G+  F ++              
Sbjct: 343 HKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEAL 402

Query: 233 -----------EPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQ 280
                       PD + Y T++D LC      + L  F+ + S      +  +  L+   
Sbjct: 403 LVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGL 462

Query: 281 CLCLNF--------------LCL--------IDGLCKISKLKIARELFQSLPRAGLMPNV 318
           C C  +              +CL        +  LCK  ++  A+ LF  + R G+ PN 
Sbjct: 463 CTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNT 522

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
            TYN LI G C DG+MDE      V +        G+ P   TYN +IN + + GR+  G
Sbjct: 523 NTYNTLIDGYCLDGKMDEAMKLLGVMVF------NGVKPSDVTYNTIINGYSQNGRIEDG 576

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKIL 404
             +   +      P  VT+  L++ L
Sbjct: 577 LTLLREMDGKGVNPGIVTYEMLLQGL 602



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 163/351 (46%), Gaps = 30/351 (8%)

Query: 55  ERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFK 114
           +R K  G    T   P +A  VFD +L  R  R  +   N     +A+       +SLF 
Sbjct: 30  KRTKQGGRQRATE--PGDAHQVFDRLLK-RGDRASIFDLNRALSDVARASPA-VAISLFN 85

Query: 115 RL---NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           R+     T   P+  TY I+I C  ++GR+   F  +GR++ +      + F+ L+K LC
Sbjct: 86  RMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSPLLKGLC 145

Query: 172 AESRIMEAAAL-FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
              R  +A  +   ++   GC+ D+F+Y  L+ GLC    +  AL+L   MA+  G    
Sbjct: 146 DRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGR--- 202

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
            C  D + Y+T+I+GL +E             ++S  + M    P   V    + +  +I
Sbjct: 203 -CPLDVVAYTTVINGLLREG--------QLDKAYSLFDAMLDRGPSPDV----VTYSSII 249

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
             L K   +  A ++F  + + G+MP+ + Y  L+ G C+ G+  E         +FK++
Sbjct: 250 SALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKE------AIGIFKKM 303

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              G+ PD+ TY  L++  CK G+ +    IF  ++     PD+ T+ +L+
Sbjct: 304 CRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLL 354



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 163/386 (42%), Gaps = 59/386 (15%)

Query: 69  TPNEALCVFDYMLNMRPSRP-PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYT 127
           T  +AL +   M + +   P  V ++  +   L +    D   SLF  +   G  PD  T
Sbjct: 185 TSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVT 244

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           Y+ +I+   K   +     V  R++++   PD + +TSL+   C+  +  EA  +F K+ 
Sbjct: 245 YSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMC 304

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G E DV TY  L++ LC+ G +  A  +F+ +    G      +PD+ TY T++ G  
Sbjct: 305 RHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVK-RGH-----KPDSTTYGTLLHGYA 358

Query: 248 KEAGSANF-------------LGFS----CMASFSALNKMA---FYFPLVRVQCL---CL 284
            E                   LG       M +++  NK+      F  +R Q L    +
Sbjct: 359 TEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIV 418

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH----- 339
           N+  ++D LC   ++  A   F SL   GL PN+V +  LI GLC   + D+ +      
Sbjct: 419 NYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEM 478

Query: 340 ------YETVFL------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
                  +T+F                   LF  +   G+ P+  TYN LI+ +C  G++
Sbjct: 479 IDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKM 538

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
                + G ++ +   P  VT+ ++I
Sbjct: 539 DEAMKLLGVMVFNGVKPSDVTYNTII 564



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 106/241 (43%), Gaps = 18/241 (7%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FN++ G  AK    D  L +F  +   GL PD   Y  +++  C  GRV         + 
Sbjct: 385 FNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLK 444

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                P+ V FT+LI  LC   +  +   L  ++   G  LD   +N ++  LC+ G  I
Sbjct: 445 SEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVI 504

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A NLF+ M        +  EP+  TY+T+IDG C +      +    +  F+       
Sbjct: 505 EAKNLFDLMVR------IGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNG------ 552

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                 V+   + +  +I+G  +  +++    L + +   G+ P +VTY +L++GL   G
Sbjct: 553 ------VKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAG 606

Query: 333 Q 333
           +
Sbjct: 607 R 607



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FN + G L K        +LF  +   G+ P+  TYN LI+ +C  G++     +LG ++
Sbjct: 490 FNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMV 549

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            +   P  VT+ ++I       RI +   L  ++   G    + TY  L+ GL + G T+
Sbjct: 550 FNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTV 609

Query: 213 VALNLFEEM 221
            A  L+  M
Sbjct: 610 AAKELYLRM 618



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 1/115 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD M+ +    P   ++N L          D  + L   +   G+ P   TYN +
Sbjct: 505 EAKNLFDLMVRI-GIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTI 563

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           IN + + GR+  G  +L  +      P  VT+  L++ L    R + A  L+ ++
Sbjct: 564 INGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRM 618



 Score = 38.1 bits (87), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 33/63 (52%)

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++F    R  +T   P++ TY I+I C  ++GR+   F   GR++ +      + F+ L+
Sbjct: 82  SLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSPLL 141

Query: 402 KIL 404
           K L
Sbjct: 142 KGL 144


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 139/309 (44%), Gaps = 25/309 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N L   LA+    D +  ++  +    + P+ YTYN ++N +CK+G V      +  I+
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIV 245

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            +   PD  T+TSLI   C    +  A  +F ++ + GC  +   Y  LI+GLC      
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRID 305

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A++LF +M + +      C P   TY+ +I  LC     +  L          +     
Sbjct: 306 EAMDLFVKMKDDD------CYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIK---- 355

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
             P +        +  LID LC   KL+ AREL   +   GLMPNV+TYN LI G C  G
Sbjct: 356 --PNIHT------YTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
            +      E    + + + S  L P+  TYN LI  +CK   V     +  ++L     P
Sbjct: 408 MI------EDALDVVELMESRNLRPNTRTYNELIKGYCK-RNVHKAMGVLNKMLERKVLP 460

Query: 393 DAVTFTSLI 401
           D VT+ SLI
Sbjct: 461 DVVTYNSLI 469



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 48/345 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++ +L   L      +    L  ++   GL P+  TYN LIN +CK G +     
Sbjct: 355 KPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALD 414

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V+  +      P+  T+  LIK  C  + + +A  +  K+       DV TYN+LI+G C
Sbjct: 415 VVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQC 473

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R+G+   A  L   M     + G+V  PD  TY+++ID LCK               F +
Sbjct: 474 RSGNFDSAYRLLSLM----NDRGLV--PDPWTYTSMIDSLCKSKRVEEACDL-----FDS 522

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L +      +V        +  LIDG CK  K+  A  + + +     +PN +T+N LI 
Sbjct: 523 LEQKDVIPNVVM-------YTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIH 575

Query: 327 GLCNDGQMDETK-----------------------------HYETVFLLFKRLNSTGLFP 357
           GLC DG++ E                                ++  +  F+++ S+G  P
Sbjct: 576 GLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKP 635

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           D +TY   I  +C+ GR+     +  ++  +  +PD  T++SLIK
Sbjct: 636 DAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIK 680



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 148/339 (43%), Gaps = 37/339 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ V + ML  R   P V ++N L     ++ ++D+   L   +N  GL PD +TY  
Sbjct: 444 HKAMGVLNKMLE-RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTS 502

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK  RV     +   + +    P+ V +T+LI   C   ++ EA  +  K+    
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKN 562

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +  T+N LI+GLC  G    A  L E+M        +  +P   T + +I  L K+ 
Sbjct: 563 CLPNSLTFNALIHGLCTDGKLKEATLLEEKMVK------IDLQPTVSTDTILIHRLLKDG 616

Query: 251 G-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                +  F  M S         Y   ++               C+  +L+ A ++   +
Sbjct: 617 DFDHAYRRFQQMLSSGTKPDAHTYTTFIQT-------------YCREGRLQDAEDMVAKM 663

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G+ P++ TY+ LI+G  + G+ +      + F++ KR++ TG  P  +T+  LI   
Sbjct: 664 KENGVSPDLFTYSSLIKGYGDLGRTN------SAFVVLKRMHDTGCEPSQHTFLSLIKHL 717

Query: 370 --CKIGRVSSGFVIFGRILPS-CFTPDAVTFTSLIKILE 405
              K G+V  G        P  C   + + F  ++++LE
Sbjct: 718 LEMKYGKVKGGE-------PGVCVMSNMMEFDIVVELLE 749



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 128/299 (42%), Gaps = 45/299 (15%)

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           Y+Y  L+      G V   F +   +++SC   D+V  T  + DLC +    E+  L  K
Sbjct: 124 YSYASLLTLLINNGYVGVVFKIRLLMIKSC---DSVADTLFVLDLCRKMNKDESFELKYK 180

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           L + GC      YNTL+N L R G       ++ EM         VC P+  TY+ +++G
Sbjct: 181 L-IIGC------YNTLLNSLARFGLVDEMKQVYMEMLEDK-----VC-PNIYTYNKMVNG 227

Query: 246 LCK---------------EAG--------SANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
            CK               EAG        ++  +G+       +  K+    PL   +  
Sbjct: 228 YCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRN 287

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
            + +  LI GLC   ++  A +LF  +      P V TY +LI+ LC   +  E      
Sbjct: 288 EVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEA----- 342

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              L K +   G+ P+++TY +LI+  C   ++     + G++L     P+ +T+ +LI
Sbjct: 343 -LNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALI 400



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 141/334 (42%), Gaps = 41/334 (12%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V++  IL   L K   +D     F+++  +G  PD +TY   I  +C+ GR+     
Sbjct: 599 QPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAED 658

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN--- 203
           ++ ++  +  +PD  T++SLIK      R   A  +  ++   GCE    T+ +LI    
Sbjct: 659 MVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLL 718

Query: 204 ------------GLCRTGHTI---VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
                       G+C   + +   + + L E+M     E GV   P+A +Y  ++ G+C 
Sbjct: 719 EMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMV----EHGVT--PNAKSYEKLMLGIC- 771

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           E G+           F  + +     P   V      F  L+   CK+ K   A ++   
Sbjct: 772 EIGNLRV----AEKVFDHMQQKEGISPSELV------FNALLSCCCKLEKHNEAAKVVDD 821

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G +P + +  ILI  L   G+ +          +F+ L   G + D   + I+I+ 
Sbjct: 822 MICVGHLPQLESCKILICRLYKKGEKERGTS------VFQNLLQCGYYDDELAWKIIIDG 875

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             K G V + + +F  +  +  T  + T++ LI+
Sbjct: 876 VGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIE 909



 Score = 44.7 bits (104), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 49/129 (37%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VFD+M       P    FN L  C  K + ++    +   +   G  P   +  ILI   
Sbjct: 782 VFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRL 841

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            K G    G  V   +L+  +  D + +  +I  +  +  +     LF  +   GC    
Sbjct: 842 YKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSS 901

Query: 196 FTYNTLING 204
            TY+ LI G
Sbjct: 902 QTYSLLIEG 910


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 152/327 (46%), Gaps = 34/327 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  ++++ + G L      +   SLF+ +   G+ P  YTY ILI+ FCK G +      
Sbjct: 458 PDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKW 517

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L    TP+ VT+T+LI       ++  A  LF  + + GC+ +V TY  LI+G C+
Sbjct: 518 FDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCK 577

Query: 208 TGHTIVALNLFEEMANGNGEFGVV----------CE-PDAITYSTIIDGLCK--EAGSAN 254
            G    A  ++  M  G+ E   +          CE P+ ITY  ++DGLCK      A+
Sbjct: 578 AGQIEKACQIYARM-RGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAH 636

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
            L  + +A     N++ +                +IDG CKI KL+ A+E+F  +   G 
Sbjct: 637 ELLDTMLAHGCEPNQIVYD--------------AVIDGFCKIGKLQDAQEVFTKMSERGY 682

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            PN+ TY+  I  L  D ++D       V  +  ++      P++  Y  +++  CKIG+
Sbjct: 683 SPNLYTYSSFIDCLFKDNRLD------LVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGK 736

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLI 401
               + +  ++      P+ VT+T++I
Sbjct: 737 TDEAYKLMLKMEEKGCNPNVVTYTAMI 763



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 139/307 (45%), Gaps = 16/307 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     +D    +   +   G  PD  TY+ +I   C   +V   F +   + R+   P
Sbjct: 434 CLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVP 493

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
              T+T LI   C    I +A   F ++   GC  +V TY  LI+   +     VA  LF
Sbjct: 494 SVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELF 553

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLV 277
           E M          C+P+ +TY+ +IDG CK          ++ M      + M  YF L 
Sbjct: 554 EMMLLEG------CKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLD 607

Query: 278 RVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
              C   N +    L+DGLCK +++K A EL  ++   G  PN + Y+ +I G C  G++
Sbjct: 608 HNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKL 667

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
            + +       +F +++  G  P+LYTY+  I+C  K  R+     +  ++L +  TP+ 
Sbjct: 668 QDAQE------VFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNV 721

Query: 395 VTFTSLI 401
           V +T ++
Sbjct: 722 VIYTEMV 728



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 147/349 (42%), Gaps = 43/349 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A   FD ML+ +   P V ++  L     K K       LF+ + L G  P+  TY  
Sbjct: 512 QQARKWFDEMLH-KGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTA 570

Query: 131 LINCFCKMGRVSHGFVVLGRI----------------LRSCFTPDAVTFTSLIKDLCAES 174
           LI+  CK G++     +  R+                  +C  P+ +T+ +L+  LC  +
Sbjct: 571 LIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKAN 630

Query: 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234
           R+ EA  L   +   GCE +   Y+ +I+G C+ G    A  +F +M+    E G    P
Sbjct: 631 RVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMS----ERGY--SP 684

Query: 235 DAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
           +  TYS+ ID L K+      L   S M   S    +  Y  +V             DGL
Sbjct: 685 NLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMV-------------DGL 731

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CKI K   A +L   +   G  PNVVTY  +I G    G++      E    LF+ + S 
Sbjct: 732 CKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKI------EQCLELFRDMCSK 785

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           G  P+  TY +LIN  C  G +   + +   +  + +    ++   +I+
Sbjct: 786 GCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIE 834



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 144/354 (40%), Gaps = 63/354 (17%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSHGF 145
           +P  T++N L     +    DT   L KR  L+  F  DRYT +      CK G+    F
Sbjct: 208 KPSQTTYNALIQVFLRADKLDTAY-LVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREAF 266

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY------- 198
            ++       F PD V +  ++  LC  S   EA  +  ++R   C  +V TY       
Sbjct: 267 DLIDEA--EDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGC 324

Query: 199 ----------------------------NTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
                                       N+LI+  C++     A  LF++M         
Sbjct: 325 LRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCG----- 379

Query: 231 VCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL- 287
            C+P  + Y+  I  +C  +E  S++ L      ++S +  +      V V     NF  
Sbjct: 380 -CQPGYLVYNIFIGSVCSNEEQPSSDILDL-VEKAYSEMLDLGVVLNKVNVS----NFAR 433

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
           C    LC   K   A ++   +   G +P+  TY+ +I  LC+  ++      E  F LF
Sbjct: 434 C----LCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKV------EKAFSLF 483

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + +   G+ P +YTY ILI+ FCK G +      F  +L    TP+ VT+T+LI
Sbjct: 484 EEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALI 537



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 137/330 (41%), Gaps = 26/330 (7%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
            FD +       P    +N +   L +   ++  + +  R+  +   P+  TY IL++  
Sbjct: 265 AFDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGC 324

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            + G++     +L  ++     P+   F SLI   C       A  LF K+   GC+   
Sbjct: 325 LRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGY 384

Query: 196 FTYNTLINGLCRTGHTIVA--LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
             YN  I  +C       +  L+L E+  +   + GVV   + +  S     LC   G+ 
Sbjct: 385 LVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVL--NKVNVSNFARCLC---GAG 439

Query: 254 NFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            F       +F  + +M    + P        + F      LC  SK++ A  LF+ + R
Sbjct: 440 KF-----DQAFKIICEMMGKGFVPDDSTYSKVIGF------LCDASKVEKAFSLFEEMKR 488

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G++P+V TY ILI   C  G + + + +      F  +   G  P++ TY  LI+ + K
Sbjct: 489 NGIVPSVYTYTILIDSFCKAGLIQQARKW------FDEMLHKGCTPNVVTYTALIHAYLK 542

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             ++     +F  +L     P+ VT+T+LI
Sbjct: 543 AKQMPVADELFEMMLLEGCKPNVVTYTALI 572



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 119/299 (39%), Gaps = 20/299 (6%)

Query: 106 YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           ++  L    RL   G  P + TYN LI  F +  ++   ++V   +L   F  D  T + 
Sbjct: 192 WNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSC 251

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
               LC   +  EA  L  +   F    D   YN +++GLC       A+++   M + +
Sbjct: 252 FAYSLCKGGKCREAFDLIDEAEDF--VPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSS 309

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN 285
                 C P+ +TY  ++ G C   G    LG  C    S +     Y P   +      
Sbjct: 310 ------CIPNVVTYRILLSG-CLRKGQ---LG-RCKRILSMMITEGCY-PNREI------ 351

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  LI   CK      A +LF+ + + G  P  + YNI I  +C++ +   +   + V  
Sbjct: 352 FNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEK 411

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +  +   G+  +    +    C C  G+    F I   ++   F PD  T++ +I  L
Sbjct: 412 AYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFL 470



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 121/307 (39%), Gaps = 28/307 (9%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R   P + +++    CL K    D VL +  ++      P+   Y  +++  CK+G+
Sbjct: 677 MSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGK 736

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
               + ++ ++      P+ VT+T++I       +I +   LF  +   GC  +  TY  
Sbjct: 737 TDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRV 796

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LIN  C  G    A  L +EM               +++  II+G  +E     F+    
Sbjct: 797 LINHCCSNGLLDEAYKLLDEMKQ------TYWPKHILSHRKIIEGFSQE-----FITSIG 845

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR--AGLMPNV 318
           +    + N+      L R+         LID   K  +L++A +L + +    +  + N 
Sbjct: 846 LLDELSENESVPVDSLYRI---------LIDNYIKAGRLEVALDLLEEISSSPSHAVSNK 896

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
             Y  LI  L +  ++D+         L+  + S  + P+L     LI    K+ +    
Sbjct: 897 YLYASLIENLSHASKVDKA------LELYASMISKNVVPELSILVHLIKGLIKVDKWQEA 950

Query: 379 FVIFGRI 385
             +   I
Sbjct: 951 LQLSDSI 957


>gi|255661014|gb|ACU25676.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 376

 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 151/326 (46%), Gaps = 24/326 (7%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + L  R     V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK 
Sbjct: 48  WELMGREGSRSVSSFNIMMRGLFDNAKVDEVISIWELMKESGYVEDSITYGILVHGFCKN 107

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G ++    VL    R     DA  ++++I  LC E+++ +A ++   +   GC+ +   Y
Sbjct: 108 GYLNKSLHVLEIAERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVY 167

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           N LINGL        A+ +  EM  G   F     P  +TYST+I+GLCK          
Sbjct: 168 NALINGLVGASKFEDAIRVLREM--GTTHF----SPTVVTYSTLINGLCKGERFGEAYDL 221

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                   LN     + L            LI GLC   K++ A +L+  +   G  P+V
Sbjct: 222 VKEMLDKGLNPSVITYSL------------LIKGLCLDCKVEKAFQLWNQVISKGFKPDV 269

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
             +NI+I GLC+ G+M      +    L+  +N     P+L T+N L+  F K G   + 
Sbjct: 270 QMHNIMIHGLCSVGKM------QLALSLYFNMNRWDCAPNLVTHNTLMEGFYKDGDFRNA 323

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKIL 404
            VI+ RI+ +   PD +++   +K L
Sbjct: 324 LVIWARIMRNGLQPDIISYNITLKGL 349



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 152/329 (46%), Gaps = 36/329 (10%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N F ++ R+   F  L  ++    +    +F  +
Sbjct: 7   DGAKRVYKEIVESKVSPDAVVYNAMLNGFFRVRRIKDCF-KLWELMGREGSRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L   +++ E  +++  ++  G   D  TY  L++G C+ G+   +L++  E+A   G
Sbjct: 66  MRGLFDNAKVDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSLHVL-EIAERKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAG-----------------------SANFLGFSCMAS 263
             GV+   DA  YS +I+GLCKEA                        +A   G    + 
Sbjct: 125 --GVL---DAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASK 179

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F    ++             + +  LI+GLCK  +   A +L + +   GL P+V+TY++
Sbjct: 180 FEDAIRVLREMGTTHFSPTVVTYSTLINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSL 239

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI+GLC D ++      E  F L+ ++ S G  PD+  +NI+I+  C +G++     ++ 
Sbjct: 240 LIKGLCLDCKV------EKAFQLWNQVISKGFKPDVQMHNIMIHGLCSVGKMQLALSLYF 293

Query: 384 RILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            +      P+ VT  +L++    +  FR 
Sbjct: 294 NMNRWDCAPNLVTHNTLMEGFYKDGDFRN 322



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V   NI+   L         LSL+  +N     P+  T+N L+  F K G   +  V
Sbjct: 266 KPDVQMHNIMIHGLCSVGKMQLALSLYFNMNRWDCAPNLVTHNTLMEGFYKDGDFRNALV 325

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           +  RI+R+   PD +++   +K LC+ +RI   A LF
Sbjct: 326 IWARIMRNGLQPDIISYNITLKGLCSCNRI-SGAILF 361



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +   ML+ +   P V ++++L   L      +    L+ ++   G  PD   +NI+
Sbjct: 217 EAYDLVKEMLD-KGLNPSVITYSLLIKGLCLDCKVEKAFQLWNQVISKGFKPDVQMHNIM 275

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  C +G++     +   + R    P+ VT  +L++    +     A  ++ ++   G 
Sbjct: 276 IHGLCSVGKMQLALSLYFNMNRWDCAPNLVTHNTLMEGFYKDGDFRNALVIWARIMRNGL 335

Query: 192 ELDVFTYNTLINGLC 206
           + D+ +YN  + GLC
Sbjct: 336 QPDIISYNITLKGLC 350


>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial [Vitis vinifera]
 gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 151/344 (43%), Gaps = 53/344 (15%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDRYTYNILINCFCKMGRVSHGF 145
           +P V SFN L   L + K +D V  +FK      G+ P+ +T NIL+   CK   +    
Sbjct: 202 QPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAI 261

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            VL  +    F P+ VT+T+++    ++  ++ A  +F ++   G   D  TY  L++G 
Sbjct: 262 RVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGY 321

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G  + A+ + +EM           EP+ +TY  II+  CKE  S   L         
Sbjct: 322 CKKGRFMDAVKVMDEMEENR------VEPNDVTYGVIIEAYCKEKKSGEVLNL------- 368

Query: 266 ALNKM--AFYFPLVRVQCLCLNFLC-----------------------------LIDGLC 294
            L+ M    Y P   + C  ++ LC                             LI  LC
Sbjct: 369 -LDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLC 427

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K  K+  AR+LF    + G +P+ +TYN LI G+C  G++ E         L+  +   G
Sbjct: 428 KEGKVWEARKLFDEFEK-GSIPSTLTYNALIAGMCEGGELPEAAR------LWDNMVEKG 480

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
             P+ +TYN+LI  FCK+G    G  +   +L +   P+  T+ 
Sbjct: 481 CVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYA 524



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 26/251 (10%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VF  +L+ R   P  T++ IL     K   +   + +   +    + P+  TY ++I  +
Sbjct: 298 VFGEILD-RGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAY 356

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK  +      +L  +L   + P +     +I  LC E ++  A  L+ KL    C  D 
Sbjct: 357 CKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDN 416

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
              +TLI+ LC+ G    A  LF+E   G+        P  +TY+ +I G+C E G    
Sbjct: 417 AITSTLIHWLCKEGKVWEARKLFDEFEKGS-------IPSTLTYNALIAGMC-EGGE--- 465

Query: 256 LGFSCMASFSALNKMA-FYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                      L + A  +  +V   C+     +  LI G CK+   +    + + +   
Sbjct: 466 -----------LPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDN 514

Query: 313 GLMPNVVTYNI 323
           G +PN  TY I
Sbjct: 515 GCLPNKATYAI 525



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 58/240 (24%)

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
           F ++I++     R   A   F ++  FG +  V ++NTL+N L +     +   +F+   
Sbjct: 173 FITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHLMFK--- 229

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
           N   +FG+V  P+  T + ++  LCK+                                 
Sbjct: 230 NCRKKFGIV--PNVFTCNILVKALCKK--------------------------------- 254

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
                         + +  A  + + +P  G +PNVVTY  ++ G  + G M   +    
Sbjct: 255 --------------NDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARR--- 297

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
              +F  +   G  PD  TY IL++ +CK GR      +   +  +   P+ VT+  +I+
Sbjct: 298 ---VFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIE 354



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 88/202 (43%), Gaps = 23/202 (11%)

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           +++ + R  +  +AL +F+     +  F    E    TY  +I+ L K            
Sbjct: 104 VVSMISRQQNLDLALQIFDHAGKFHRNFAHNYE----TYLAMIEKLSK------------ 147

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             +F  +  +       +++C    F+ +I       + K+A   F  +P  GL P+V +
Sbjct: 148 ARAFEPMETLISQLHKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRS 207

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNST-GLFPDLYTYNILINCFCKIGRVSSGF 379
           +N L+  L       + K ++ V L+FK      G+ P+++T NIL+   CK   + +  
Sbjct: 208 FNTLLNTLV------QNKRFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAI 261

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +   +    F P+ VT+T+++
Sbjct: 262 RVLEEMPAMGFIPNVVTYTTIL 283



 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD     + S P   ++N L   + +         L+  +   G  P+ +TYN+L
Sbjct: 434 EARKLFDEF--EKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVPNAFTYNML 491

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
           I  FCK+G    G  V+  +L +   P+  T+ 
Sbjct: 492 IKGFCKVGNAREGIRVMEEMLDNGCLPNKATYA 524


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 147/314 (46%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V + + L   LA+ + +  VL LF  L   G+ PD Y Y +++ C C++   +    +
Sbjct: 188 PEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEI 247

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + +   +  +   VT+   I  LC   R+ EA  +   L   G + D+ TY TL+ GLCR
Sbjct: 248 INQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCR 307

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                V + + +EM     E G V  P     S +I+GL K          S   +F  L
Sbjct: 308 IQEFEVGMEMMDEMI----ELGYV--PSEAAVSGLIEGLIKMG--------SIEGAFELL 353

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           NK+     L  V  L + +  +I+ LCK  KL+ A  LF  +   GL PN VTY ILI G
Sbjct: 354 NKVG---KLGVVPNLFV-YNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDG 409

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
                ++D        F  F ++   G+   +Y+YN +INC CK G++    ++F  ++ 
Sbjct: 410 FGRRAKLD------VAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVD 463

Query: 388 SCFTPDAVTFTSLI 401
               P   T+TSLI
Sbjct: 464 KGLKPTVATYTSLI 477



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 147/318 (46%), Gaps = 27/318 (8%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           PS   V+    L   L K    +    L  ++   G+ P+ + YN +IN  CK G++   
Sbjct: 328 PSEAAVSG---LIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEA 384

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
            ++   +      P+ VT+T LI      +++  A   F K+   G    V++YN++IN 
Sbjct: 385 ELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINC 444

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
            C+ G   +A  LF+EM +         +P   TY+++I G CK+             +F
Sbjct: 445 QCKFGKMKMAELLFKEMVDKG------LKPTVATYTSLISGYCKDG--------LVPKAF 490

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
              ++M        +    + F  LI GLC+I+K+  A +LF  +    ++PN VTYN+L
Sbjct: 491 KLYHEMTGK----GIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVL 546

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I G C +G  + T+ +E +  + K+    GL PD YTY  LI   C  GRVS        
Sbjct: 547 IEGHCREG--NTTRAFELLDEMIKK----GLSPDTYTYRPLIAGLCSTGRVSEAKEFIND 600

Query: 385 ILPSCFTPDAVTFTSLIK 402
           +       D + +T+L++
Sbjct: 601 LHHKHQRLDELCYTALLQ 618



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 156/363 (42%), Gaps = 57/363 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F  M   R   P   ++ IL     +    D     F ++   G+    Y+YN +
Sbjct: 383 EAELLFSVMAE-RGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSM 441

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           INC CK G++    ++   ++     P   T+TSLI   C +  + +A  L+ ++   G 
Sbjct: 442 INCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGI 501

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T+  LI GLC+      A  LF+EM     E  ++  P+ +TY+ +I+G C+E  
Sbjct: 502 APNTVTFTALICGLCQINKMAEASKLFDEMV----ELKIL--PNEVTYNVLIEGHCREGN 555

Query: 252 SANFLGFSCMASFSALNKMA---------FYFPLV------------------------R 278
           +          +F  L++M           Y PL+                        R
Sbjct: 556 TTR--------AFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQR 607

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           +  LC  +  L+ G CK  ++K A    Q +   GL  ++V+Y +LI G  N        
Sbjct: 608 LDELC--YTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQND----- 660

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
               +F L + ++  G+ PD   Y ILI+ F K G +   F  +  ++   + P++VT+T
Sbjct: 661 --RILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYT 718

Query: 399 SLI 401
           +L+
Sbjct: 719 ALV 721



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 143/317 (45%), Gaps = 32/317 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++N+    L K+K     + + + L   GL  D  TY  L+   C++     G  ++ 
Sbjct: 260 IVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMD 319

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++   + P     + LI+ L     I  A  L  K+   G   ++F YN++IN LC+TG
Sbjct: 320 EMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTG 379

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A  LF  MA    E G+   P+ +TY+ +IDG  + A                   
Sbjct: 380 KLEEAELLFSVMA----ERGL--NPNDVTYTILIDGFGRRAKL----------------D 417

Query: 270 MAFYFPLVRVQC----LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           +AFY+    ++C       ++  +I+  CK  K+K+A  LF+ +   GL P V TY  LI
Sbjct: 418 VAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLI 477

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C DG + +       F L+  +   G+ P+  T+  LI   C+I +++    +F  +
Sbjct: 478 SGYCKDGLVPKA------FKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEM 531

Query: 386 LPSCFTPDAVTFTSLIK 402
           +     P+ VT+  LI+
Sbjct: 532 VELKILPNEVTYNVLIE 548



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 139/365 (38%), Gaps = 58/365 (15%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +F  L   L +         LF  +    + P+  TYN+LI   C+ G  +  F +
Sbjct: 503 PNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFEL 562

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +++   +PD  T+  LI  LC+  R+ EA      L      LD   Y  L+ G C+
Sbjct: 563 LDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCK 622

Query: 208 TGHTIVALNLFEEMANGNGEFGVVC----------------------------EPDAITY 239
            G    AL   +EM     +  +V                             +PD + Y
Sbjct: 623 EGRIKEALVARQEMVGRGLQMDLVSYAVLISGALNQNDRILFELLREMHGKGMQPDNVIY 682

Query: 240 STIIDGLCKEAGSANFLGFSCM----------ASFSAL----------NKMAFYFPLVRV 279
           + +IDG  K         F  +           +++AL          N+    F  + V
Sbjct: 683 TILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLV 742

Query: 280 QCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
                N +   C +D L K   ++ A +L  ++ + G   N VTYNILIRG C  G+  E
Sbjct: 743 GEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQ-GSFANTVTYNILIRGYCQIGKFQE 801

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                 V +        G+ PD  TY+  I  +CK G V +   ++  +L     PD V 
Sbjct: 802 AAKLLDVMI------GIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVV 855

Query: 397 FTSLI 401
           F  LI
Sbjct: 856 FNFLI 860



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 143/334 (42%), Gaps = 35/334 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD M+ ++   P   ++N+L     +  +      L   +   GL PD YTY  L
Sbjct: 523 EASKLFDEMVELKI-LPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPL 581

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I   C  GRVS     +  +       D + +T+L++  C E RI EA     ++   G 
Sbjct: 582 IAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGL 641

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           ++D+ +Y  LI+G       I+   L  EM +G G      +PD + Y+ +IDG  K   
Sbjct: 642 QMDLVSYAVLISGALNQNDRIL-FELLREM-HGKG-----MQPDNVIYTILIDGFIK--- 691

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCL----CLNFLCLIDGLCKISKLKIARELFQ 307
           S N              K AF F  + +        + +  L++GL K   +  A+ LF+
Sbjct: 692 SGNL-------------KKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFK 738

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +     +PN +TY   +  L  +G M+         L        G F +  TYNILI 
Sbjct: 739 RMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAML-------QGSFANTVTYNILIR 791

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +C+IG+      +   ++     PD +T+++ I
Sbjct: 792 GYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFI 825



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 139/320 (43%), Gaps = 36/320 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P +  +N +   L KT   +    LF  +   GL P+  TY ILI+ F +  ++   F  
Sbjct: 363 PNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYY 422

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++    +    ++ S+I   C   ++  A  LF ++   G +  V TY +LI+G C+
Sbjct: 423 FNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCK 482

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  L+ EM  G G       P+ +T++ +I GLC+                  +
Sbjct: 483 DGLVPKAFKLYHEMT-GKG-----IAPNTVTFTALICGLCQ------------------I 518

Query: 268 NKMA----FYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
           NKMA     +  +V ++ L   + +  LI+G C+      A EL   + + GL P+  TY
Sbjct: 519 NKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTY 578

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
             LI GLC+ G++ E K +         L+      D   Y  L+  FCK GR+    V 
Sbjct: 579 RPLIAGLCSTGRVSEAKEF------INDLHHKHQRLDELCYTALLQGFCKEGRIKEALVA 632

Query: 382 FGRILPSCFTPDAVTFTSLI 401
              ++      D V++  LI
Sbjct: 633 RQEMVGRGLQMDLVSYAVLI 652



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 143/343 (41%), Gaps = 42/343 (12%)

Query: 43  VKDRASLEQFLKERCKSS------GEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNIL 96
           + D     Q L E C ++       EG I      EAL     M+  R  +  + S+ +L
Sbjct: 598 INDLHHKHQRLDELCYTALLQGFCKEGRI-----KEALVARQEMVG-RGLQMDLVSYAVL 651

Query: 97  F-GCLAKTKHYDTVL-SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS 154
             G L +    D +L  L + ++  G+ PD   Y ILI+ F K G +   F     ++  
Sbjct: 652 ISGALNQN---DRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGE 708

Query: 155 CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA 214
            + P++VT+T+L+  L     + EA  LF ++ V     +  TY   ++ L + G+   A
Sbjct: 709 GYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENA 768

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
           L L   M  G+         + +TY+ +I G C+            +  F    K+    
Sbjct: 769 LQLHNAMLQGSF-------ANTVTYNILIRGYCQ------------IGKFQEAAKLLDVM 809

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
             + +   C+ +   I   CK   +  A ++++ + + GL P+ V +N LI   C +G++
Sbjct: 810 IGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGEL 869

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           D         +L       GL P   TY+ L+    +  R++ 
Sbjct: 870 DRALQLRNDMML------RGLKPTQSTYHSLMVQLAQRARLTQ 906



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 106/268 (39%), Gaps = 47/268 (17%)

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
           F  LI+      R+M+   +   +R +G   +V T + L+N L R       L LF+ + 
Sbjct: 158 FDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLV 217

Query: 223 NG-----------------------------NGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           N                              N   G  C    +TY+  I+GLCK     
Sbjct: 218 NAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRV- 276

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
               +  +    +L +      LV        +  L+ GLC+I + ++  E+   +   G
Sbjct: 277 ----WEAVEVKRSLGEKGLKADLV-------TYCTLVLGLCRIQEFEVGMEMMDEMIELG 325

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
            +P+    + LI GL   G +      E  F L  ++   G+ P+L+ YN +IN  CK G
Sbjct: 326 YVPSEAAVSGLIEGLIKMGSI------EGAFELLNKVGKLGVVPNLFVYNSMINSLCKTG 379

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++    ++F  +      P+ VT+T LI
Sbjct: 380 KLEEAELLFSVMAERGLNPNDVTYTILI 407


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 160/334 (47%), Gaps = 25/334 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
             AL VF+ M   R S P V ++  L   L K+   +  + LF R+   GL P+  TY  
Sbjct: 229 EHALKVFEGMDGNRCS-PNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTA 287

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   C  G +   F +L  +  +   P+  TF+ LI  LC   ++ EA      L   G
Sbjct: 288 LIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKG 347

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +++   Y +LI+GLC+TG    A  L ++M +     G V  PDA +YS++IDGLC++ 
Sbjct: 348 VKVNEVVYTSLIDGLCKTGKIDAADELMQKMISE----GFV--PDAHSYSSLIDGLCRQ- 400

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                         S    M        +Q   + +  +ID L +    +  +++F  + 
Sbjct: 401 -----------KKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMI 449

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P++VTY + +R  C +G+M++ +       +  ++   G+FP+L TYN LI  + 
Sbjct: 450 ATGINPDIVTYTVFVRSYCEEGRMEDAES------MIVQMVDRGVFPNLVTYNTLIRGYA 503

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +G VS  F  F  ++   + P+  ++T L++++
Sbjct: 504 NLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLV 537



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 151/341 (44%), Gaps = 41/341 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           PP+   N L   LA+ + +  + SL  R+    L     TY  LIN +C  G +      
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPARNL----RTYTTLINAYCLAGDIPAAKQH 94

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L +   PD+  +TS +   C    +  A  +F  + + GC    FTY  L++GL  
Sbjct: 95  LTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLG 154

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL----------G 257
            G    A+ +F  M   +      C PD   Y+T++ GLC EAG               G
Sbjct: 155 AGMVREAMTVFVGMRADS------CAPDTHVYATMVHGLC-EAGRTEEAEVLLEEAMSNG 207

Query: 258 FSC-MASFSAL-----NKMAFYFPLVRVQCLCLN--------FLCLIDGLCKISKLKIAR 303
           F   +  ++AL     N       L   + +  N        +  LI GLCK  K++ A 
Sbjct: 208 FEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAM 267

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            LF  +  AGL PNVVTY  LI+G CN+G      H +  F L   + + GL P+ +T++
Sbjct: 268 VLFSRMVEAGLEPNVVTYTALIQGQCNEG------HLQCAFRLLHLMETNGLVPNDWTFS 321

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +LI+  CK  +V    +  G ++      + V +TSLI  L
Sbjct: 322 VLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGL 362



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 137/315 (43%), Gaps = 53/315 (16%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  P+   YN LI+ +C  G + H   V   +  +  +P+  T+T LI  LC   ++  A
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             LF+++   G E +V TY  LI G C  GH   A  L   M       G+V  P+  T+
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETN----GLV--PNDWTF 320

Query: 240 STIIDGLCKEAGSAN---FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           S +ID LCK         FLG S +     +N++               +  LIDGLCK 
Sbjct: 321 SVLIDALCKREKVEEAQLFLG-SLVKKGVKVNEVV--------------YTSLIDGLCKT 365

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK------------------ 338
            K+  A EL Q +   G +P+  +Y+ LI GLC   ++ +                    
Sbjct: 366 GKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTY 425

Query: 339 -----------HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
                        E    +F ++ +TG+ PD+ TY + +  +C+ GR+     +  +++ 
Sbjct: 426 TIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVD 485

Query: 388 SCFTPDAVTFTSLIK 402
               P+ VT+ +LI+
Sbjct: 486 RGVFPNLVTYNTLIR 500



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 138/298 (46%), Gaps = 30/298 (10%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           +++F  +      PD + Y  +++  C+ GR     V+L   + + F P+ V + +LI  
Sbjct: 162 MTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDG 221

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
            C    +  A  +F  +    C  +V TY  LI+GLC++G    A+ LF  M     E G
Sbjct: 222 YCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMV----EAG 277

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---F 286
           +  EP+ +TY+ +I G C E          C  +F  L+       L+    L  N   F
Sbjct: 278 L--EPNVVTYTALIQGQCNEG------HLQC--AFRLLH-------LMETNGLVPNDWTF 320

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LID LCK  K++ A+    SL + G+  N V Y  LI GLC  G++D          L
Sbjct: 321 SVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADE------L 374

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +++ S G  PD ++Y+ LI+  C+  ++S   ++   ++        VT+T +I  L
Sbjct: 375 MQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 142/357 (39%), Gaps = 61/357 (17%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++  L        H      L   +   GL P+ +T+++LI+  CK  +V    +
Sbjct: 279 EPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQL 338

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            LG +++     + V +TSLI  LC   +I  A  L  K+   G   D  +Y++LI+GLC
Sbjct: 339 FLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLC 398

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFS 265
           R      A  + E+M     E G+   P  +TY+ IID L +E GS      F  M +  
Sbjct: 399 RQKKLSQATLMLEDMM----EKGIQASP--VTYTIIIDELVREVGSEGPKKIFDKMIATG 452

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
               +  Y   VR               C+  +++ A  +   +   G+ PN+VTYN LI
Sbjct: 453 INPDIVTYTVFVR-------------SYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLI 499

Query: 326 RGLCNDGQMDET------------KHYETVFLLFKRL--------NSTGLFP-----DLY 360
           RG  N G + +             K  E  + +  RL        NS  ++      DL 
Sbjct: 500 RGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQ 559

Query: 361 T----------------YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                            Y+  I C C++ R+      F  +  +  TP    +TS+I
Sbjct: 560 VLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSII 616



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 115/277 (41%), Gaps = 14/277 (5%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +  L   L KT   D    L +++   G  PD ++Y+ LI+  C+  ++S   ++L  ++
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                   VT+T +I +L  E        +F K+   G   D+ TY   +   C  G   
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRME 474

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA-GSANFLGFSCMASFSALNKMA 271
            A ++  +M +  G F     P+ +TY+T+I G       S  F  F  M          
Sbjct: 475 DAESMIVQMVD-RGVF-----PNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNED 528

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
            Y  L+R+     +    +D + KI+ +K  + L + +    L      Y+  IR LC  
Sbjct: 529 SYTVLLRLVVKKSSSDNSVD-IWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRV 587

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
            +++E KH+      F  + +  L P    Y  +I+C
Sbjct: 588 DRLEEAKHF------FMGMQNANLTPSEDVYTSIIDC 618


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 139/309 (44%), Gaps = 25/309 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N L   LA+    D +  ++  +    + P+ YTYN ++N +CK+G V      + +I+
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            +   PD  T+TSLI   C    +  A  +F ++ + GC  +   Y  LI+GLC      
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A++LF +M +        C P   TY+ +I  LC     +  L        + +     
Sbjct: 306 EAMDLFVKMKDDE------CFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIK---- 355

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
             P +        +  LID LC   K + AREL   +   GLMPNV+TYN LI G C  G
Sbjct: 356 --PNIHT------YTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG 407

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
            +      E    + + + S  L P+  TYN LI  +CK   V     +  ++L     P
Sbjct: 408 MI------EDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLP 460

Query: 393 DAVTFTSLI 401
           D VT+ SLI
Sbjct: 461 DVVTYNSLI 469



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 154/345 (44%), Gaps = 48/345 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++ +L   L     ++    L  ++   GL P+  TYN LIN +CK G +     
Sbjct: 355 KPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVD 414

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V+  +     +P+  T+  LIK  C +S + +A  +  K+       DV TYN+LI+G C
Sbjct: 415 VVELMESRKLSPNTRTYNELIKGYC-KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQC 473

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R+G+   A  L   M     + G+V  PD  TY+++ID LCK               F +
Sbjct: 474 RSGNFDSAYRLLSLM----NDRGLV--PDQWTYTSMIDSLCKSKRVEEACDL-----FDS 522

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L +      +V        +  LIDG CK  K+  A  + + +     +PN +T+N LI 
Sbjct: 523 LEQKGVNPNVVM-------YTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIH 575

Query: 327 GLCNDGQMDETK-----------------------------HYETVFLLFKRLNSTGLFP 357
           GLC DG++ E                                ++  +  F+++ S+G  P
Sbjct: 576 GLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKP 635

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           D +TY   I  +C+ GR+     +  ++  +  +PD  T++SLIK
Sbjct: 636 DAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIK 680



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 147/331 (44%), Gaps = 26/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  VF+ M  ++  R    ++  L   L   +  D  + LF ++     FP   TY +
Sbjct: 270 DSAFKVFNEM-PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTV 328

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   C   R S    ++  +  +   P+  T+T LI  LC++ +  +A  L  ++   G
Sbjct: 329 LIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKG 388

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +V TYN LING C+ G    A+++ E M +          P+  TY+ +I G CK  
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVELMESRK------LSPNTRTYNELIKGYCKS- 441

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                   +   +   LNKM     L  V    + +  LIDG C+      A  L   + 
Sbjct: 442 --------NVHKAMGVLNKMLERKVLPDV----VTYNSLIDGQCRSGNFDSAYRLLSLMN 489

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL+P+  TY  +I  LC      ++K  E    LF  L   G+ P++  Y  LI+ +C
Sbjct: 490 DRGLVPDQWTYTSMIDSLC------KSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYC 543

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G+V    ++  ++L     P+++TF +LI
Sbjct: 544 KAGKVDEAHLMLEKMLSKNCLPNSLTFNALI 574



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 146/340 (42%), Gaps = 39/340 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ V + ML  R   P V ++N L     ++ ++D+   L   +N  GL PD++TY  
Sbjct: 444 HKAMGVLNKMLE-RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTS 502

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK  RV     +   + +    P+ V +T+LI   C   ++ EA  +  K+    
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN 562

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +  T+N LI+GLC  G    A  L E+M        +  +P   T + +I  L K+ 
Sbjct: 563 CLPNSLTFNALIHGLCADGKLKEATLLEEKMVK------IGLQPTVSTDTILIHRLLKDG 616

Query: 251 G-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                +  F  M S         Y   ++               C+  +L  A ++   +
Sbjct: 617 DFDHAYSRFQQMLSSGTKPDAHTYTTFIQT-------------YCREGRLLDAEDMMAKM 663

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G+ P++ TY+ LI+G  + GQ +        F + KR+  TG  P  +T+  LI   
Sbjct: 664 RENGVSPDLFTYSSLIKGYGDLGQTN------FAFDVLKRMRDTGCEPSQHTFLSLIKHL 717

Query: 370 CKIGRVSSGFVIFGRILPS----CFTPDAVTFTSLIKILE 405
            ++         +G+   S    C   + + F +++++LE
Sbjct: 718 LEMK--------YGKQKGSEPELCAMSNMMEFDTVVELLE 749



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 150/374 (40%), Gaps = 55/374 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + + ML+ +   P   +FN L   L           L +++   GL P   T  I
Sbjct: 549 DEAHLMLEKMLS-KNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTI 607

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+   K G   H +    ++L S   PDA T+T+ I+  C E R+++A  +  K+R  G
Sbjct: 608 LIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENG 667

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--- 247
              D+FTY++LI G    G T  A ++ + M +        CEP   T+ ++I  L    
Sbjct: 668 VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG------CEPSQHTFLSLIKHLLEMK 721

Query: 248 --KEAGS-------ANFLGFSC-------MASFSALNKMAFYFPLVRVQCLCLN------ 285
             K+ GS       +N + F         M   S       Y  L+   C   N      
Sbjct: 722 YGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEK 781

Query: 286 -----------------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
                            F  L+   CK+ K   A ++   +   G +P + +  +LI GL
Sbjct: 782 VFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGL 841

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
              G+ +          +F+ L   G + D   + I+I+   K G V + + +F  +  +
Sbjct: 842 YKKGEKERGTS------VFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKN 895

Query: 389 CFTPDAVTFTSLIK 402
                + T++ LI+
Sbjct: 896 GCKFSSQTYSLLIE 909



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 112/279 (40%), Gaps = 34/279 (12%)

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           Y+Y  L+      G V   F +   +++SC   D+V     + DLC +    E   L  K
Sbjct: 124 YSYASLLTLLINNGYVGVVFKIRLLMIKSC---DSVGDALYVLDLCRKMNKDERFELKYK 180

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           L + GC      YNTL+N L R G       ++ EM         VC P+  TY+ +++G
Sbjct: 181 L-IIGC------YNTLLNSLARFGLVDEMKQVYMEMLEDK-----VC-PNIYTYNKMVNG 227

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
            CK         +      + L+   F             +  LI G C+   L  A ++
Sbjct: 228 YCKLGNVEEANQYVSKIVEAGLDPDFF------------TYTSLIMGYCQRKDLDSAFKV 275

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  +P  G   N V Y  LI GLC   ++DE         LF ++     FP + TY +L
Sbjct: 276 FNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMD------LFVKMKDDECFPTVRTYTVL 329

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           I   C   R S    +   +  +   P+  T+T LI  L
Sbjct: 330 IKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSL 368



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 50/129 (38%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VFD+M       P    FN L  C  K K ++    +   +   G  P   +  +LI   
Sbjct: 782 VFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGL 841

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            K G    G  V   +L+  +  D + +  +I  +  +  +     LF  +   GC+   
Sbjct: 842 YKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSS 901

Query: 196 FTYNTLING 204
            TY+ LI G
Sbjct: 902 QTYSLLIEG 910


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 139/295 (47%), Gaps = 24/295 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L     K  +    L L++ +   GL PD  T+ ILI+  CK G +     +
Sbjct: 250 PNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNL 309

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +++   TP+   + SLI   C    + EA ALF +L  F    DVFTY+ LI GLC 
Sbjct: 310 FVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCS 369

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
              T  A N+FE+M       G++   +++TY+++IDG CKE      L      + +  
Sbjct: 370 VSRTEEAGNIFEKMTKE----GIL--ANSVTYNSLIDGCCKEGKMDKALEICSQMTENG- 422

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                      V+   + F  LIDG CKI  L+ A  ++  +    L P+VVTY  +I G
Sbjct: 423 -----------VEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDG 471

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            C  G M E         L+  +   G+ P+ YT + L++  CK G++S    +F
Sbjct: 472 HCKYGSMKEA------LKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELF 520



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 146/331 (44%), Gaps = 35/331 (10%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD M  ++   P V  + IL   L      +   S+ + +   G++P+ YTYN L++ +
Sbjct: 204 MFDEM-RVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGY 262

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK+        +   +L     PD VTF  LI  LC    +  A  LF  +  F    ++
Sbjct: 263 CKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNI 322

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-----KEA 250
             YN+LI+  C+ G    A+ LF E+      F V   PD  TYS +I GLC     +EA
Sbjct: 323 AVYNSLIDAYCKVGDVSEAMALFLELE----RFEV--SPDVFTYSILIRGLCSVSRTEEA 376

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G+     F  M     L     Y               LIDG CK  K+  A E+   + 
Sbjct: 377 GNI----FEKMTKEGILANSVTYNS-------------LIDGCCKEGKMDKALEICSQMT 419

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ PNV+T++ LI G C      + ++ +    ++  +    L PD+ TY  +I+  C
Sbjct: 420 ENGVEPNVITFSTLIDGYC------KIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHC 473

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G +     ++  +L +  TP+  T + L+
Sbjct: 474 KYGSMKEALKLYSDMLDNGITPNCYTISCLL 504



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 166/384 (43%), Gaps = 75/384 (19%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           F  +  ++ S+     +  L   L K +  +  LS++ ++   G        N+L+    
Sbjct: 102 FSELSRLKSSKFTPNVYGELIIVLCKMELVEEALSMYHKV---GAALTIQACNVLLYVLV 158

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           K GR    + +   ++ +  +P  +TF +LI   C +  ++ A  +F ++RV G    V 
Sbjct: 159 KTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVI 218

Query: 197 TYNTLINGL-----------------------------------CRTGHTIVALNLFEEM 221
            Y  LI GL                                   C+  +   AL L+++M
Sbjct: 219 VYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDM 278

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
               GE G+V  PD +T+  +IDGLCK  E  +A  L F  M  FS    +A Y  L+  
Sbjct: 279 L---GE-GLV--PDVVTFGILIDGLCKFGEMKAARNL-FVNMIKFSVTPNIAVYNSLIDA 331

Query: 280 QCL----------------------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
            C                          +  LI GLC +S+ + A  +F+ + + G++ N
Sbjct: 332 YCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILAN 391

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
            VTYN LI G C +G+MD+         +  ++   G+ P++ T++ LI+ +CKI  + +
Sbjct: 392 SVTYNSLIDGCCKEGKMDKA------LEICSQMTENGVEPNVITFSTLIDGYCKIRNLQA 445

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
              I+  ++    +PD VT+T++I
Sbjct: 446 AMGIYSEMVIKSLSPDVVTYTAMI 469



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 142/319 (44%), Gaps = 72/319 (22%)

Query: 125 RYTYNILINCFCKMGRVSHG----FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180
           RY  N L+    K  +  H     F  L R+  S FTP+   +  LI  LC    + EA 
Sbjct: 78  RYLLNDLVQNLVKSHKPYHACQLAFSELSRLKSSKFTPN--VYGELIIVLCKMELVEEAL 135

Query: 181 ALFTKL--------------------------RVF------GCELDVFTYNTLINGLCRT 208
           +++ K+                          R++      G    V T+ TLI+G CR 
Sbjct: 136 SMYHKVGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQ 195

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-----KEAGSANFLGFSCMAS 263
           G  + A  +F+EM       G+V  P  I Y+ +I GLC     +EA S +         
Sbjct: 196 GDLLRAQEMFDEMRVK----GIV--PTVIVYTILIRGLCSDNKIEEAESMH--------- 240

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
             A+ ++  Y P V        +  L+DG CK++  K A  L+Q +   GL+P+VVT+ I
Sbjct: 241 -RAMREVGVY-PNV------YTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGI 292

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GLC  G+M   ++      LF  +    + P++  YN LI+ +CK+G VS    +F 
Sbjct: 293 LIDGLCKFGEMKAARN------LFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFL 346

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +     +PD  T++ LI+
Sbjct: 347 ELERFEVSPDVFTYSILIR 365



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 151/324 (46%), Gaps = 35/324 (10%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           GD++     EA+ +F  +     S P V +++IL   L      +   ++F+++   G+ 
Sbjct: 336 GDVS-----EAMALFLELERFEVS-PDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGIL 389

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
            +  TYN LI+  CK G++     +  ++  +   P+ +TF++LI   C    +  A  +
Sbjct: 390 ANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGI 449

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           ++++ +     DV TY  +I+G C+ G    AL L+ +M + NG       P+  T S +
Sbjct: 450 YSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLD-NG-----ITPNCYTISCL 503

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC--------LNFLCLIDGLC 294
           +DGLCK+   ++ L       F+   K+ F  P   V            + +  LI GLC
Sbjct: 504 LDGLCKDGKISDALEL-----FT--EKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLC 556

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           +  +   A +LF  + R GL P+ V Y +++RGL       + K+   + +L   +   G
Sbjct: 557 QDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLF------QVKY--ILMMLHADMLKFG 608

Query: 355 LFPDLYTYNILINCFCKIGRVSSG 378
           + P+   + IL  C+ + G + S 
Sbjct: 609 VIPNSAVHVILCECYQESGFLKSA 632


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 144/316 (45%), Gaps = 28/316 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   S N     L+K    D     F+ +   G+ P  +TYNI+I   CK G +     +
Sbjct: 95  PKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSL 154

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++ +   TPD VT+ +LI        + E+  LF +++  GCE DV TYN LIN  C+
Sbjct: 155 FEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCK 214

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
               + A   F EM + +       +P+ I+YST+ID LCKE       G   MA     
Sbjct: 215 FKGMLRAFEFFREMKDKD------LKPNVISYSTLIDALCKE-------GMMQMA----- 256

Query: 268 NKMAFYFPLVRVQCLCLNFL--CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             + F+  + RV  L   F    LID  CK   L  A  L   + +  +  N+VTY  L+
Sbjct: 257 --IKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLL 314

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC +G M+E +       LF+ +   G+ P+L  Y  LI+   K+  +     +F  +
Sbjct: 315 DGLCEEGMMNEAEE------LFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEM 368

Query: 386 LPSCFTPDAVTFTSLI 401
                 PD + + +++
Sbjct: 369 REKDIKPDILLWGTIV 384



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 153/353 (43%), Gaps = 37/353 (10%)

Query: 74  LCVFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           L  F++   M+    +P V S++ L   L K       +  F  +   GL P+ +TY+ L
Sbjct: 219 LRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSL 278

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK G +   F++   +L+     + VT+T+L+  LC E  + EA  LF  +   G 
Sbjct: 279 IDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGV 338

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC---- 247
             ++  Y  LI+G  +      A+ LF EM   +       +PD + + TI+ GLC    
Sbjct: 339 TPNLQAYTALIHGHIKVRSMDKAMELFNEMREKD------IKPDILLWGTIVWGLCSESK 392

Query: 248 -----------KEAG-SANFLGFSCM--ASFSALNKMAFYFPLVRVQCL-----CLNFLC 288
                      KE+G  AN + ++ +  A F A N+      L  ++ L      + F  
Sbjct: 393 LEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCA 452

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LIDGLCK   ++ A   F  +P   L PNV  Y  LI GLC +  + + K       LF 
Sbjct: 453 LIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKK------LFD 506

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +    + PD   Y  +I+   K G       +  +++      D   +TSL+
Sbjct: 507 EMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLV 559



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 6/116 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +I  +CK   +  AR LF+ + + GL P++VTYN LI G    G +DE+        LF+
Sbjct: 138 MIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDES------VCLFE 191

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +   G  PD+ TYN LIN FCK   +   F  F  +      P+ +++++LI  L
Sbjct: 192 EMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDAL 247



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/273 (20%), Positives = 108/273 (39%), Gaps = 29/273 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++  L     K +  D  + LF  +    + PD   +  ++   C   ++    ++
Sbjct: 340 PNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKII 399

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +  S    + V +T+L+          EA  L  ++R  G E+ V T+  LI+GLC+
Sbjct: 400 MTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCK 459

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK------------EAGSANF 255
            G    A+  F  M + +       +P+   Y+ +IDGLCK            E    N 
Sbjct: 460 RGLVQEAIYYFGRMPDHD------LQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNM 513

Query: 256 L----GFSCM-------ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           +     ++ M        +F     M      + ++     +  L+ GL +  +++ AR+
Sbjct: 514 IPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARK 573

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
               +   G++P+      L+R     G +DE 
Sbjct: 574 FLAEMIGKGIIPDETLCTRLLRKHYELGNIDEA 606


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 154/333 (46%), Gaps = 26/333 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F+  +      P V SFN++   + +  ++   L L +R+   G  PD  T+NI
Sbjct: 196 QDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNI 255

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           L++  C+  +V+ G  VL R+ R     P+AVT+TS+I   C   ++ +A +++  +   
Sbjct: 256 LVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLES 315

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +  TYN LING  +      A+ ++ ++   +      C PD +T+S++IDG C+ 
Sbjct: 316 GTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRH------CPPDVVTFSSLIDGYCR- 368

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                              ++     L  +Q     F  +I  LCK ++   A ++ + L
Sbjct: 369 -----------CGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILREL 417

Query: 310 P-RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
             R  + P    YN +I  LC  G++DE        L+   +   G  PD YTY ILI  
Sbjct: 418 NMRTDIAPQTFIYNPVIDILCKGGKVDEAN------LIVTDMKEKGCHPDKYTYTILIIG 471

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            C  GR+     +F +++ +   PD +T  S +
Sbjct: 472 HCMKGRIPEAITLFHKMVEAGCRPDNITVNSFV 504



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 152/355 (42%), Gaps = 36/355 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL +FD M++     P    F+ + G        D   +L  + +  G   + Y YN L
Sbjct: 126 DALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAASTLLTKGSRLGCCIEPYAYNYL 185

Query: 132 INCFCKMGRVSHGFVVL-GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +N     GR      +    I    ++PD  +F  +IK +C      +A  L  ++  FG
Sbjct: 186 LNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFG 245

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
           C  D  T+N L++GLCR         +   +         VC P+A+TY+++I G CK  
Sbjct: 246 CSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDG-----VCMPNAVTYTSVISGYCKAG 300

Query: 249 -------------EAGS-ANFLGFSCM-----ASFSALNKMAFYFPLVRVQCL--CLNFL 287
                        E+G+  N + ++ +      +    + +  Y  L+   C    + F 
Sbjct: 301 KMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFS 360

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LIDG C+  +L  A+ +++ +    + PNV T++I+I  LC   +  E         + 
Sbjct: 361 SLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEA------LDIL 414

Query: 348 KRLN-STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + LN  T + P  + YN +I+  CK G+V    +I   +      PD  T+T LI
Sbjct: 415 RELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILI 469



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 30/239 (12%)

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNG---EFGVVC-EPDAITYSTIID-------- 244
           +Y  +I  LCR+G    AL LF++M + +G   E G       + T + ++D        
Sbjct: 110 SYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAASTLLTK 169

Query: 245 ----GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKIS 297
               G C E  + N+L  S +A   A + +A +   ++         +F  +I G+C++ 
Sbjct: 170 GSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMG 229

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL-F 356
             + A EL + +   G  P+ +T+NIL+ GLC   Q++  K +E    + +RL   G+  
Sbjct: 230 NFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVN--KGHE----VLRRLQRDGVCM 283

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----KILEINSFFR 411
           P+  TY  +I+ +CK G++     ++  +L S   P+ VT+  LI    K L++ S  R
Sbjct: 284 PNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVR 342


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 157/338 (46%), Gaps = 41/338 (12%)

Query: 90  VTSFN-ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           V  FN ++ GCLA+ K  +    L++ + L G  PD +TY+IL++  CK+GR+S    +L
Sbjct: 311 VVLFNTVIGGCLAEGKLAEAT-ELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLL 369

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
             + +  F P+ VT+T ++   C      +  AL  ++   G  L+   YN +I  LC+ 
Sbjct: 370 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKD 429

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----------------KEAGS 252
           G    A+ L +EM +        C PD  +Y+TII  LC                +E   
Sbjct: 430 GRMDEAMGLIQEMRSQG------CNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVV 483

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC---------LIDGLCKISKLKIAR 303
           AN + ++ +    AL +   +   VR+    +   C         LI  +CK   +  + 
Sbjct: 484 ANGITYNTI--IHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSL 541

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            L + +   G+ PN V+YNILI  LC +      +       L K++ + GL PD+ TYN
Sbjct: 542 VLLEEMAEKGIKPNNVSYNILISELCKE------RRVRDALELSKQMLNQGLAPDIVTYN 595

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            LIN  CK+G + +   +  ++      PD +T+  LI
Sbjct: 596 TLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 633



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 156/347 (44%), Gaps = 36/347 (10%)

Query: 79  YMLNMRPSR----PPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILIN 133
           ++L+  P R    P   S+N++   LA+   +   L+L++R+ +   + P  +T+ +   
Sbjct: 124 HLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAAR 183

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             C++GR +    +L  + R    PDAV + ++I  LC +  + EAA L  ++ + GC  
Sbjct: 184 ALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAA 243

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAG 251
           DV T++ ++ G+C  G    A  L + M          C P  +TY  ++ GLC  ++A 
Sbjct: 244 DVNTFDDVVRGMCGLGRVREAARLVDRMMTKG------CMPGVMTYGFLLQGLCRVRQAD 297

Query: 252 SA---------------NFLGFSCMASFSALNKMAFY--FPLVRVQCLCLNFLCLIDGLC 294
            A               N +   C+A          Y    L   Q     +  L+ GLC
Sbjct: 298 EARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLC 357

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K+ ++  A  L + + + G  PNVVTY I++   C +G  D+T+       L + +++ G
Sbjct: 358 KLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTR------ALLEEMSAKG 411

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L  +   YN +I   CK GR+     +   +      PD  ++ ++I
Sbjct: 412 LTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTII 458



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 142/302 (47%), Gaps = 26/302 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++ I+     K   +D   +L + ++  GL  +   YN +I   CK GR+     +
Sbjct: 379 PNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGL 438

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +      PD  ++ ++I  LC   ++ EA  +F  L   G   +  TYNT+I+ L R
Sbjct: 439 IQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLR 498

Query: 208 TGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            G    A+ L +EM  +G       C  D ++Y+ +I  +CK+             S   
Sbjct: 499 DGRWQDAVRLAKEMILHG-------CSLDVVSYNGLIKAMCKDGNVDR--------SLVL 543

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L +MA       ++   +++  LI  LCK  +++ A EL + +   GL P++VTYN LI 
Sbjct: 544 LEEMAEKG----IKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLIN 599

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G M           L ++L++  + PD+ TYNILI+  CK+  +    ++  R +
Sbjct: 600 GLCKMGWM------HAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAM 653

Query: 387 PS 388
            +
Sbjct: 654 AA 655



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  S    +K  CK   +G++     + +L + + M   +  +P   S+NIL   L K +
Sbjct: 520 DVVSYNGLIKAMCK---DGNV-----DRSLVLLEEMAE-KGIKPNNVSYNILISELCKER 570

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
                L L K++   GL PD  TYN LIN  CKMG +     +L ++      PD +T+ 
Sbjct: 571 RVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYN 630

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGC 191
            LI   C    + +AA L  +     C
Sbjct: 631 ILISWHCKVRLLDDAAMLLNRAMAAVC 657


>gi|255660970|gb|ACU25654.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 350

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 151/317 (47%), Gaps = 38/317 (11%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
            V+SFN +   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL
Sbjct: 32  SVSSFNTMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVL 91

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
               +     DA  ++++I  LC E+ +  A ++   +   GC+ +V  YNTLINGL   
Sbjct: 92  EMAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGA 151

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                A+ +F EM        + C P  ITY+T+I+G CK                   N
Sbjct: 152 SKFEDAIRVFREMGT------MHCSPTIITYNTLINGFCK-------------------N 186

Query: 269 KM-AFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
           KM    + LV+      +    + +  L++GLC   K++ A +L+  +   G  P+V  +
Sbjct: 187 KMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCFDHKVERALQLWNQVTSKGFKPDVQMH 246

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           NILI GLC+ G+M      +    L+  +N     P+L ++N L+  F K G + +  VI
Sbjct: 247 NILIHGLCSVGKM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVI 300

Query: 382 FGRILPSCFTPDAVTFT 398
           + RIL +   PD +++ 
Sbjct: 301 WARILRNGLEPDIISYN 317



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 145/326 (44%), Gaps = 34/326 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K  + D  L + +     G   D + Y+ 
Sbjct: 50  DEVISIWELMKESGFVEDSIT-YGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSA 108

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+   + +LI  L   S+  +A  +F ++    
Sbjct: 109 MINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 168

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLING C+      A NL +E+ +         +P  ITYS +++GLC + 
Sbjct: 169 CSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKG------LDPGVITYSMLMEGLCFDH 222

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L       ++ +    F  P V++  +      LI GLC + K+++A  L+  + 
Sbjct: 223 KVERALQL-----WNQVTSKGFK-PDVQMHNI------LIHGLCSVGKMQLALSLYFDMN 270

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R    PN+V++N L+ G   DG +          +++ R+   GL PD+ +YNI +   C
Sbjct: 271 RWKCAPNLVSHNTLMEGFYKDGDI------RNALVIWARILRNGLEPDIISYNITLEGLC 324

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVT 396
              R+S   +         F  DAVT
Sbjct: 325 SCNRISDAIL---------FLHDAVT 341



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 7/116 (6%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           ++ G  +++K+K   EL++ +   G   +V ++N ++RGL ++G++DE      V  +++
Sbjct: 5   MLKGYFRVAKIKDCFELWEMMGSEG-NRSVSSFNTMMRGLFDNGKVDE------VISIWE 57

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +  +G   D  TY IL++ FCK G +     +           DA  ++++I  L
Sbjct: 58  LMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGL 113



 Score = 40.4 bits (93), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+ G CK   +  +  + +   + G + +   Y+ +I GLC +  +D          +  
Sbjct: 74  LVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRA------VSVLN 127

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            +  +G  P+++ YN LIN      +      +F  +     +P  +T+ +LI     N 
Sbjct: 128 GMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGFCKNK 187

Query: 409 FFRQ 412
            F +
Sbjct: 188 MFGE 191


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 135/318 (42%), Gaps = 28/318 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   +FN L     +T   D    LF ++ L G   D  +Y  LI   C+ GR+     
Sbjct: 7   RPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVE 66

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           + G + +    PD   + +L+K LC   R  E   +  +++  G       Y  +++  C
Sbjct: 67  LFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRC 122

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R      A  + +EM      F     P  +T + +I+  CKE   ++ L          
Sbjct: 123 RERKAKEAEEMLQEM------FEKGLAPCVVTCTAVINAYCKEGRMSDAL------RVLE 170

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L K+    P V        +  L+ G C   K+  A  L   +   G+ P+ VTYN+LIR
Sbjct: 171 LMKLRGCKPNV------WTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIR 224

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C DG      H E+ F L + +   GL  D YTYN LIN  CK GR      +F  + 
Sbjct: 225 GQCIDG------HIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLE 278

Query: 387 PSCFTPDAVTFTSLIKIL 404
                P+AVTF SLI  L
Sbjct: 279 TRGIKPNAVTFNSLINGL 296



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 150/334 (44%), Gaps = 25/334 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL V + M  +R  +P V ++N L             ++L  ++   G+ PD  TYN+
Sbjct: 163 SDALRVLELM-KLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNL 221

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   C  G +   F +L  +       D  T+ +LI  LC + R  +A +LF  L   G
Sbjct: 222 LIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRG 281

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + +  T+N+LINGLC++G   +A    E+M +        C PD  TYS+ I+ LCK  
Sbjct: 282 IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAG------CTPDTYTYSSFIEHLCKMK 335

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           GS   L F        L K         V+   +N+  +I  L K     +    +  + 
Sbjct: 336 GSQEGLSFIG----EMLQK--------DVKPSTVNYTIVIHKLLKERNYGLVARTWGEMV 383

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            +G  P+VVTY   +R  C +G+++E ++      +   ++  G+  D   YN L++   
Sbjct: 384 SSGCNPDVVTYTTSMRAYCIEGRLNEAEN------VLMEMSKNGVTVDTMAYNTLMDGHA 437

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            IG+      I  ++      P+  T+  L++ L
Sbjct: 438 SIGQTDHAVSILKQMTSVASVPNQFTYFILLRHL 471



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 146/334 (43%), Gaps = 29/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F  M      +P +  +  L   L   +  +  L + +R+   G  P    Y  
Sbjct: 62  DEAVELFGEM-----DQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 116

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++  C+  +      +L  +      P  VT T++I   C E R+ +A  +   +++ G
Sbjct: 117 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 176

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+ +V+TYN L+ G C  G    A+ L  +M       GV   PDA+TY+ +I G C + 
Sbjct: 177 CKPNVWTYNALVQGFCNEGKVHKAMTLLNKMR----ACGV--NPDAVTYNLLIRGQCIDG 230

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                      ++F  L  M     L+  Q     +  LI+ LCK  +   A  LF SL 
Sbjct: 231 --------HIESAFRLLRLMEG-DGLIADQ---YTYNALINALCKDGRTDQACSLFDSLE 278

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ PN VT+N LI GLC  G+ D        +   +++ S G  PD YTY+  I   C
Sbjct: 279 TRGIKPNAVTFNSLINGLCKSGKAD------IAWKFLEKMVSAGCTPDTYTYSSFIEHLC 332

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K+     G    G +L     P  V +T +I  L
Sbjct: 333 KMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKL 366



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 144/317 (45%), Gaps = 30/317 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +   +     K       L + + + L G  P+ +TYN L+  FC  G+V     +
Sbjct: 144 PCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTL 203

Query: 148 LGRILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L + +R+C   PDAVT+  LI+  C +  I  A  L   +   G   D +TYN LIN LC
Sbjct: 204 LNK-MRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALC 262

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G T  A +LF+ +           +P+A+T++++I+GLCK +G A+        ++  
Sbjct: 263 KDGRTDQACSLFDSLETRG------IKPNAVTFNSLINGLCK-SGKADI-------AWKF 308

Query: 267 LNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           L KM      V   C      +   I+ LCK+   +        + +  + P+ V Y I+
Sbjct: 309 LEKM------VSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIV 362

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I  L  +      ++Y  V   +  + S+G  PD+ TY   +  +C  GR++    +   
Sbjct: 363 IHKLLKE------RNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLME 416

Query: 385 ILPSCFTPDAVTFTSLI 401
           +  +  T D + + +L+
Sbjct: 417 MSKNGVTVDTMAYNTLM 433



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 147/339 (43%), Gaps = 18/339 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD  L  R  +P   +FN L   L K+   D      +++   G  PD YTY+ 
Sbjct: 268 DQACSLFDS-LETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSS 326

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I   CKM     G   +G +L+    P  V +T +I  L  E      A  + ++   G
Sbjct: 327 FIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSG 386

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  DV TY T +   C  G    A N+  EM+      GV    D + Y+T++DG     
Sbjct: 387 CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKN----GVTV--DTMAYNTLMDGHASIG 440

Query: 251 GSANFLG-FSCMASFSALNKMAFYFPLVRVQC---LCLNFLCLI-DGLCKISKLKIAREL 305
            + + +     M S +++     YF L+R      L  + L L   G+ K  +L     L
Sbjct: 441 QTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGL 500

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  + +   +PN  TY+ ++ G   DG+ +E     T  +   + +S  L  D+YT   L
Sbjct: 501 FDVMKKNEFLPNSGTYSSILEGFSEDGRTEEA----TSLVSLMKEDSISLNEDIYT--AL 554

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + CFCK  R    +V+   ++   F P  +++  L+  L
Sbjct: 555 VTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGL 593



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)

Query: 101 AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 160
            +T+   +++SL K  +++ L  D YT   L+ CFCK  R    +V++  +++  F P  
Sbjct: 527 GRTEEATSLVSLMKEDSIS-LNEDIYT--ALVTCFCKSKRYLDAWVLVCSMIQHGFIPQL 583

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220
           +++  L+  L  E +  +A  +F   R      D   +  +I+GL + GH+ ++  +   
Sbjct: 584 MSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIM 643

Query: 221 MANGNGEFGVVCEPDAITYSTIIDGL 246
           +   N      C P   TY+ + + L
Sbjct: 644 LERMN------CRPSHQTYAMLTEEL 663



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 6/144 (4%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
           V  LF  +      P+  TY+ ++  F + GR      ++  +     + +   +T+L+ 
Sbjct: 497 VFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVT 556

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
             C   R ++A  L   +   G    + +Y  L++GL   G T  A  +F  M +   ++
Sbjct: 557 CFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIF--MNSRWKDY 614

Query: 229 GVVCEPDAITYSTIIDGLCKEAGS 252
                PD I +  IIDGL K+  S
Sbjct: 615 S----PDEIVWKVIIDGLIKKGHS 634


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 159/364 (43%), Gaps = 36/364 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL V D ML  R   P V ++ IL     K   Y   + L   +   G  PD  TYN+++
Sbjct: 179 ALAVLDEMLRRR-CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVV 237

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  C+ GRV      L  +      P+ V++  ++K LC   R  +A  L  ++   GC 
Sbjct: 238 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP 297

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            +V T+N LI+ LCR G    AL + E++     ++G  C P++++Y+ ++   CK+   
Sbjct: 298 PNVVTFNMLISFLCRKGLVEPALEVLEQIP----KYG--CSPNSLSYNPLLHAFCKQKKM 351

Query: 253 ANFLGF-SCMASFSALNKMAFYFPLVRVQC----------------------LCLNFLCL 289
              + F   M S      +  Y  L+   C                      + +++  +
Sbjct: 352 DKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTV 411

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           IDGL K  K K A EL   +   GL P+++TY+ +  GLC + ++      E     F +
Sbjct: 412 IDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRI------EDAIRAFGK 465

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409
           +   G+ P+   YN +I   CK     S   +F  ++ +   P+  T+T LI+ L     
Sbjct: 466 VQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGL 525

Query: 410 FRQV 413
            ++ 
Sbjct: 526 IKEA 529



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 134/302 (44%), Gaps = 39/302 (12%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D YT + LI   C  GR ++   VL  +LR    PD VT+T L++  C  S   +A  L 
Sbjct: 159 DAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLL 218

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            ++R  GC  D+ TYN ++NG+C+ G    A+   + + +    +G  CEP+ ++Y+ ++
Sbjct: 219 DEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPS----YG--CEPNTVSYNIVL 272

Query: 244 DGLCK------------EAGSA----NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
            GLC             E G      N + F+ + SF  L +     P + V      + 
Sbjct: 273 KGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISF--LCRKGLVEPALEVLEQIPKYG 330

Query: 288 C---------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           C         L+   CK  K+  A      +   G  P++V+YN L+  LC  G++D   
Sbjct: 331 CSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD--- 387

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  L  +L   G  P L +YN +I+   K G+      +   ++     PD +T++
Sbjct: 388 ---VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYS 444

Query: 399 SL 400
           ++
Sbjct: 445 TI 446



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 124/252 (49%), Gaps = 20/252 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN+L   L +    +  L + +++   G  P+  +YN L++ FCK  ++      
Sbjct: 298 PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAF 357

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  ++ R C+ PD V++ +L+  LC    +  A  L  +L+  GC   + +YNT+I+GL 
Sbjct: 358 LDLMVSRGCY-PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLT 416

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G T  AL L  EM +         +PD ITYSTI  GLC+E    +      + +F  
Sbjct: 417 KAGKTKEALELLNEMVSKG------LQPDIITYSTIAAGLCREDRIED-----AIRAFGK 465

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +  M      +R   +  N + L  GLCK  +   A +LF  +   G MPN  TY ILI 
Sbjct: 466 VQDMG-----IRPNTVLYNAIIL--GLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIE 518

Query: 327 GLCNDGQMDETK 338
           GL  +G + E +
Sbjct: 519 GLAYEGLIKEAR 530



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 114/257 (44%), Gaps = 36/257 (14%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R++ S   PDA T  +LIK L A  R  EA  +        C  DV  YN ++ G C  G
Sbjct: 88  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLA-----ACGPDVMAYNAMMAGYCGAG 142

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A     E A          E DA T  T+I GLC    +AN L        + L++
Sbjct: 143 QVDAARRWCAERA---------VERDAYTCDTLIRGLCGRGRTANAL--------AVLDE 185

Query: 270 MAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           M      +R +C+   + +  L++  CK S  K A +L   +   G  P++VTYN+++ G
Sbjct: 186 M------LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNG 239

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           +C +G++D+   +       K L S G  P+  +YNI++   C   R      + G +  
Sbjct: 240 ICQEGRVDDAIEF------LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQ 293

Query: 388 SCFTPDAVTFTSLIKIL 404
               P+ VTF  LI  L
Sbjct: 294 KGCPPNVVTFNMLISFL 310



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 32/287 (11%)

Query: 115 RLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174
           RL  +   PD  T   LI      GR +       R+L +C  PD + + +++   C   
Sbjct: 88  RLVGSARRPDAGTCAALIKKLSASGRTAEAR----RVLAAC-GPDVMAYNAMMAGYCGAG 142

Query: 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234
           ++ +AA  +   R    E D +T +TLI GLC  G T  AL + +EM          C P
Sbjct: 143 QV-DAARRWCAERAV--ERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRR------CVP 193

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           D +TY+ +++  CK +G    +          L++M        +    + +  +++G+C
Sbjct: 194 DVVTYTILLEATCKRSGYKQAMKL--------LDEMRDKGCTPDI----VTYNVVVNGIC 241

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           +  ++  A E  ++LP  G  PN V+YNI+++GLC        + +E    L   +   G
Sbjct: 242 QEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT------AERWEDAEELMGEMGQKG 295

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             P++ T+N+LI+  C+ G V     +  +I     +P+++++  L+
Sbjct: 296 CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLL 342



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 60/150 (40%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + L  +   P + S+N +   L K       L L   +   GL PD  TY+ +    C+ 
Sbjct: 394 HQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 453

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
            R+       G++      P+ V + ++I  LC       A  LF  +   GC  +  TY
Sbjct: 454 DRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 513

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEF 228
             LI GL   G    A +L +E+ +   E 
Sbjct: 514 TILIEGLAYEGLIKEARDLLDELCSRGEEI 543



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+V+ YN ++ G C  GQ+D  + +              +  D YT + LI   C  GR 
Sbjct: 126 PDVMAYNAMMAGYCGAGQVDAARRW---------CAERAVERDAYTCDTLIRGLCGRGRT 176

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           ++   +   +L     PD VT+T L++     S ++Q 
Sbjct: 177 ANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQA 214



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 1/123 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL + + M++ +  +P + +++ +   L +    +  +  F ++   G+ P+   YN 
Sbjct: 422 KEALELLNEMVS-KGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNA 480

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I   CK         +   ++ +   P+  T+T LI+ L  E  I EA  L  +L   G
Sbjct: 481 IILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 540

Query: 191 CEL 193
            E+
Sbjct: 541 EEI 543


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 157/346 (45%), Gaps = 58/346 (16%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRL---NLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +TS+N L  CL++    D ++SL+K +   N   +FP+  T N ++N +CK+G ++   +
Sbjct: 151 LTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARL 210

Query: 147 VLGRILRSCFTPD-------------------------------AVTFTSLIKDLCAESR 175
              RILR    PD                               AV++T+LI  LC   +
Sbjct: 211 FFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGK 270

Query: 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
           + EA   + ++R  GC   V TY  L+  LC +G  + AL+LF EM     E G  CEP+
Sbjct: 271 LHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMR----ERG--CEPN 324

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
             TY+ +ID LCKE             +   LN+M        V    + F  LI   CK
Sbjct: 325 VYTYTVLIDYLCKEGRMDE--------ALKMLNEMVEKGVAPSV----VPFNALIGSYCK 372

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
              ++ A  +   +    + PNV TYN LI G C    MD          L  ++  + L
Sbjct: 373 RGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRA------MALLNKMVESKL 426

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            PD+ TYN LI+  C++G V S   +F  ++   F+PD  TF + +
Sbjct: 427 SPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFM 472



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 151/326 (46%), Gaps = 26/326 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L     + K  D  ++L  ++  + L PD  TYN LI+  C++G V     +
Sbjct: 393 PNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRL 452

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++R  F+PD  TF + +  LC   R+ EA  +   L+    + +   Y  LI+G C+
Sbjct: 453 FRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCK 512

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN-FLGFSCMASFSA 266
            G    A +LF+ M          C P++IT++ +IDGL KE    +  L    MA F  
Sbjct: 513 AGKIEHAASLFKRM------LAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDV 566

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
              +  Y  LV             + + K      A E+   L  +G  PNVVTY   I+
Sbjct: 567 KPTLHTYNILV-------------EEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIK 613

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             C+ G+++E +       +  ++ + G+  D + YN+LIN +  +G + S F +  R+ 
Sbjct: 614 AYCSQGRLEEAEE------MVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMF 667

Query: 387 PSCFTPDAVTFTSLIKILEINSFFRQ 412
            +   P  +T++ L+K L I    ++
Sbjct: 668 GTGCEPSYLTYSILMKHLVIEKHKKE 693



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 144/333 (43%), Gaps = 29/333 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +F  M   R   P V ++ +L   L K    D  L +   +   G+ P    +N L
Sbjct: 308 EALSLFGEMRE-RGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNAL 366

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  +CK G +     VLG +      P+  T+  LI   C    +  A AL  K+     
Sbjct: 367 IGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKL 426

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--E 249
             DV TYNTLI+GLC  G    A  LF  M            PD  T++  +  LC+   
Sbjct: 427 SPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDG------FSPDQWTFNAFMVCLCRMGR 480

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
            G A+ +  S        N+ A              +  LIDG CK  K++ A  LF+ +
Sbjct: 481 VGEAHQILESLKEKHVKANEHA--------------YTALIDGYCKAGKIEHAASLFKRM 526

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
                +PN +T+N++I GL  +G++ +        LL + +    + P L+TYNIL+   
Sbjct: 527 LAEECLPNSITFNVMIDGLRKEGKVQDA------MLLVEDMAKFDVKPTLHTYNILVEEV 580

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            K         I  R++ S + P+ VT+T+ IK
Sbjct: 581 LKEYDFDRANEILNRLISSGYQPNVVTYTAFIK 613



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 131/297 (44%), Gaps = 37/297 (12%)

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           +Y  LI+  C+ G++        R+      P   T+T L+  LC   R +EA +LF ++
Sbjct: 257 SYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEM 316

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           R  GCE +V+TY  LI+ LC+ G    AL +  EM     E GV   P  + ++ +I   
Sbjct: 317 RERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMV----EKGVA--PSVVPFNALIGSY 370

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIAR 303
           CK     + +G                  L+  + +C N   +  LI G C+   +  A 
Sbjct: 371 CKRGMMEDAVGV---------------LGLMESKKVCPNVRTYNELICGFCRGKSMDRAM 415

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            L   +  + L P+VVTYN LI GLC  G +D          LF+ +   G  PD +T+N
Sbjct: 416 ALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASR------LFRLMIRDGFSPDQWTFN 469

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
             + C C++GRV     I   +       +   +T+LI       KI    S F+++
Sbjct: 470 AFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRM 526



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 131/317 (41%), Gaps = 40/317 (12%)

Query: 108 TVLSLFKRLNLTGLFPDRY-TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT-S 165
           T L+ F+ +     FP    T++ L+    +   +     V   +++SC +P   TF  +
Sbjct: 68  TALNFFRWIRRHHNFPHSLATHHSLLLLLVRHRTLRAAENVRNSMIKSCTSPHDATFLLN 127

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM--AN 223
           L++      R+  AAA          +L + +YN L+  L R       ++L++EM   N
Sbjct: 128 LLR------RMNTAAAAADHQHQLAFKLSLTSYNRLLMCLSRFSMVDEMISLYKEMLTDN 181

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSA-NFLGFSCMASFSALNKMAFYFPLVRVQCL 282
           GN  F     P+ IT +T+++  CK    A   L F  +        +  Y  LV   C 
Sbjct: 182 GNSVF-----PNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCR 236

Query: 283 ------------------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
                              +++  LI GLC+  KL  A E +  +   G  P V TY +L
Sbjct: 237 NDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVL 296

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           +  LC  G+  E         LF  +   G  P++YTY +LI+  CK GR+     +   
Sbjct: 297 VCALCESGRELEA------LSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNE 350

Query: 385 ILPSCFTPDAVTFTSLI 401
           ++     P  V F +LI
Sbjct: 351 MVEKGVAPSVVPFNALI 367



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 126/304 (41%), Gaps = 51/304 (16%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++             +    +  ++   G+  D + YN+LIN +  MG +   F 
Sbjct: 602 QPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFG 661

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA-------------------------- 180
           VL R+  +   P  +T++ L+K L  E    E +                          
Sbjct: 662 VLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFG 721

Query: 181 ---ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
               LF K+   GC  ++ TY+ LINGLC+ G   VA +L+  M  G    G+   P  I
Sbjct: 722 ITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREG----GI--SPSEI 775

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
            +++++   CK       LG    A  + L+ M     L  ++    ++  LI GL +  
Sbjct: 776 IHNSLLSSCCK-------LGMFGEA-VTLLDSMMECSHLAHLE----SYKLLICGLFEQM 823

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
             + A  +F SL R G   + V + +LI GL   G +D+    E + L+ K  N   L P
Sbjct: 824 NKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCS--ELLNLMEK--NGCRLHP 879

Query: 358 DLYT 361
           + Y+
Sbjct: 880 ETYS 883



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 111/315 (35%), Gaps = 65/315 (20%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++NIL   + K   +D    +  RL  +G  P+  TY   I  +C  GR+     
Sbjct: 567 KPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLE---- 622

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
                                          EA  +  K++  G  LD F YN LIN   
Sbjct: 623 -------------------------------EAEEMVIKIKNEGVLLDSFIYNLLINAYG 651

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A  +   M      FG  CEP  +TYS ++  L  E                 
Sbjct: 652 CMGLLDSAFGVLRRM------FGTGCEPSYLTYSILMKHLVIEKHKK-----------EG 694

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            N +     L  +     +    ID         I   LF+ +   G +PN+ TY+ LI 
Sbjct: 695 SNPVGLDVSLTNISVDNTDIWSKID-------FGITTVLFEKMAECGCVPNLNTYSKLIN 747

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G+++        F L+  +   G+ P    +N L++  CK+G       +   ++
Sbjct: 748 GLCKVGRLN------VAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMM 801

Query: 387 PSCFTPDAVTFTSLI 401
                    ++  LI
Sbjct: 802 ECSHLAHLESYKLLI 816



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 12/162 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +++ L   L K    +   SL+  +   G+ P    +N L++  CK+G       +
Sbjct: 737 PNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTL 796

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++         ++  LI  L  +    +A A+F  L   G   D   +  LI+GL +
Sbjct: 797 LDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAK 856

Query: 208 TGHTIVA---LNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           TG+       LNL E+  NG       C     TYS ++  L
Sbjct: 857 TGYVDQCSELLNLMEK--NG-------CRLHPETYSMLMQEL 889


>gi|255661016|gb|ACU25677.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 367

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 149/326 (45%), Gaps = 25/326 (7%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + L  R     V+SFNI+   L      D V+S+++ +  +G   D  TY IL++ FCK 
Sbjct: 48  WELMGREGSRSVSSFNIMXRGLFBNGKVDEVISIWELMKESGYVEDSITYGILVHGFCKN 107

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G ++    VL    R     DA  ++++I  LC E+++ +A ++   +   GC+ +   Y
Sbjct: 108 GYLNKSIHVLEIAERKGGVLDAFAYSAMINGLCKEAKLDKAVSVLNGMIKNGCKPNAHVY 167

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           N LINGL        A+ +  EM  G   F     P  +TYS JI+GLCK          
Sbjct: 168 NALINGLVGASKFEDAIRVLREM--GTXHF----SPTVVTYSXJINGLCKGERFGEAYDL 221

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                   LN     + L            LI GLC   K+  A +L+  +   G  P+V
Sbjct: 222 VKEMLDKGLNPSVITYSL------------LIKGLCLDRKVDKALQLWNQVISKGFKPDV 269

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
             +NI+I GLC+ G+M        + L    +N     P+L T+N L+  F K G V + 
Sbjct: 270 QMHNIMIHGLCSVGKM-------QLALSLYYMNRWDCAPNLVTHNTLMEGFYKDGDVRNA 322

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKIL 404
            VI+ RIL +   PD +++   +K L
Sbjct: 323 LVIWARILRNGLQPDIISYNITLKGL 348



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 150/332 (45%), Gaps = 63/332 (18%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF---VVLGR------------- 150
           D    ++K +  + + PD   YN ++N + ++GR+   F    ++GR             
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVGRIKDCFELWELMGREGSRSVSSFNIMX 66

Query: 151 ------------------ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
                             +  S +  D++T+  L+   C    + ++  +       G  
Sbjct: 67  RGLFBNGKVDEVISIWELMKESGYVEDSITYGILVHGFCKNGYLNKSIHVLEIAERKGGV 126

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           LD F Y+ +INGLC+      A+++   M   NG     C+P+A  Y+ +I+GL    G+
Sbjct: 127 LDAFAYSAMINGLCKEAKLDKAVSVLNGMIK-NG-----CKPNAHVYNALINGL---VGA 177

Query: 253 ANFLGFSCMASFSALNKMA--FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           + F       +   L +M    + P V      + +  JI+GLCK  +   A +L + + 
Sbjct: 178 SKF-----EDAIRVLREMGTXHFSPTV------VTYSXJINGLCKGERFGEAYDLVKEML 226

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL P+V+TY++LI+GLC D ++D+         L+ ++ S G  PD+  +NI+I+  C
Sbjct: 227 DKGLNPSVITYSLLIKGLCLDRKVDKA------LQLWNQVISKGFKPDVQMHNIMIHGLC 280

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            +G++     ++      C  P+ VT  +L++
Sbjct: 281 SVGKMQLALSLYYMNRWDC-APNLVTHNTLME 311



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 3/115 (2%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +++ +++ +  +P V   NI+   L         LSL+  +N     P+  T+N 
Sbjct: 251 DKALQLWNQVIS-KGFKPDVQMHNIMIHGLCSVGKMQLALSLY-YMNRWDCAPNLVTHNT 308

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           L+  F K G V +  V+  RILR+   PD +++   +K LC+ +RI   A LF +
Sbjct: 309 LMEGFYKDGDVRNALVIWARILRNGLQPDIISYNITLKGLCSCNRI-SGAILFLQ 362


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 158/340 (46%), Gaps = 32/340 (9%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           + S + ++AL    +M++     P   +FN L   L ++ ++D    +F  L  + +  D
Sbjct: 100 VHSHSTDQALTFLHHMIH-EGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNELK-SKVVLD 157

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            Y++ I+I   C+ G    GF +L  +     +P+ V +T+LI   C +  +M A  LF 
Sbjct: 158 AYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFC 217

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           K+   G   +  TY+ L+NG  + G       ++E M       G+V  P+A  Y+ +I 
Sbjct: 218 KMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRS----GIV--PNAYAYNCLIS 271

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR---VQCLCLNFLCLIDGLCKISKLKI 301
             C +                 ++K    F  +R   + C  + +  LI GLC+  K   
Sbjct: 272 EYCNDG---------------MVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGE 316

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A +L   + + GL PN+VTYNILI G C+  +MD      +   LF +L S+GL P L T
Sbjct: 317 AVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMD------SAVRLFNQLKSSGLSPTLVT 370

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           YN LI  + K+  ++    +   +   C  P  VT+T LI
Sbjct: 371 YNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILI 410



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 153/317 (48%), Gaps = 35/317 (11%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
           +LF ++N  GL P+ +TY++L+N F K G    GF +   + RS   P+A  +  LI + 
Sbjct: 214 NLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEY 273

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C +  + +A  +F ++R  G    V TYN LI GLCR      A+ L  ++        V
Sbjct: 274 CNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNK------V 327

Query: 231 VCEPDAITYSTIIDGLC---------------KEAG-SANFLGFSCM-ASFSALNKMAFY 273
              P+ +TY+ +I+G C               K +G S   + ++ + A +S +  +A  
Sbjct: 328 GLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGA 387

Query: 274 FPLVR---VQCLC---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             LV+    +C+    + +  LID   +++  + A E+   + ++GL+P+V TY++L+ G
Sbjct: 388 LDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHG 447

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G M E         LFK L    L P+   YN +I+ +CK G       +   ++ 
Sbjct: 448 LCVHGNMKEASK------LFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQ 501

Query: 388 SCFTPDAVTFTSLIKIL 404
           S   P+  +F S I +L
Sbjct: 502 SGMVPNVASFCSTIGLL 518



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 123/281 (43%), Gaps = 34/281 (12%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++NIL G L + K +   + L  ++N  GL P+  TYNILIN FC + ++     +  
Sbjct: 298 VMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFN 357

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           ++  S  +P  VT+ +LI        +  A  L  ++          TY  LI+   R  
Sbjct: 358 QLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLN 417

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-----KEAGSANFLGFSCMASF 264
           HT  A  +   M       G+V  PD  TYS ++ GLC     KEA             F
Sbjct: 418 HTEKACEMHSLMEKS----GLV--PDVYTYSVLLHGLCVHGNMKEASKL----------F 461

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            +L +M        +Q   + +  +I G CK      A  L   + ++G++PNV ++   
Sbjct: 462 KSLGEM-------HLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCST 514

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           I  LC D +  E +      LL  ++ ++GL P +  Y ++
Sbjct: 515 IGLLCRDEKWKEAE------LLLGQMINSGLKPSVSLYKMV 549



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 58/136 (42%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++ IL    A+  H +    +   +  +GL PD YTY++L++  C  G +     +
Sbjct: 401 PSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKL 460

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      P++V + ++I   C E     A  L  ++   G   +V ++ + I  LCR
Sbjct: 461 FKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCR 520

Query: 208 TGHTIVALNLFEEMAN 223
                 A  L  +M N
Sbjct: 521 DEKWKEAELLLGQMIN 536



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 15/207 (7%)

Query: 7   ING-----RMRFADRL-SRKPTSSISENEPSYPTTTATLRLTVKDRASLE--QFLKERCK 58
           ING     +M  A RL ++  +S +S    +Y T  A          +L+  + ++ERC 
Sbjct: 340 INGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCI 399

Query: 59  SSGEGDIT-------SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
           +  +   T        +   E  C    ++      P V ++++L   L    +      
Sbjct: 400 APSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASK 459

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           LFK L    L P+   YN +I+ +CK G       +L  +++S   P+  +F S I  LC
Sbjct: 460 LFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLC 519

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTY 198
            + +  EA  L  ++   G +  V  Y
Sbjct: 520 RDEKWKEAELLLGQMINSGLKPSVSLY 546


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 148/323 (45%), Gaps = 29/323 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +F+++   L K   +     + + +   G  P   TYN +I+ +CK G++     +L 
Sbjct: 229 VVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLK 288

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P+ +TF  LI   C +  +  A  +F +++  G + +V TYN+LINGLC  G
Sbjct: 289 EMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNG 348

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               AL L ++M+      G+  +P+ +TY+ +I+G CK+      +          + K
Sbjct: 349 KLDEALGLQDKMS------GMGLKPNVVTYNALINGFCKKK-----MLKEAREMLDDIGK 397

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                P V      + F  LID   K  ++  A  L   +   G+ PNV TYN LI G C
Sbjct: 398 RGLA-PNV------ITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFC 450

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
            +G + E +       L K +   GL  DL TYNIL++  CK G       +   +    
Sbjct: 451 REGNVKEARK------LAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVG 504

Query: 390 FTPDAVTFTSLIKILEINSFFRQ 412
             P  +T+ +L     I+ +FR+
Sbjct: 505 LNPSHLTYNAL-----IDGYFRE 522



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 146/318 (45%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R    S N +   L K      V S++K +    +  +  T++++IN  CK+G+      
Sbjct: 191 RLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGD 250

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V+  +    F+P  +T+ ++I   C   ++ +A AL  ++       +  T+N LI+G C
Sbjct: 251 VVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFC 310

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R  +   A  +FEEM           +P+ +TY+++I+GLC        LG     S   
Sbjct: 311 RDENVTAAKKVFEEMQRQG------LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMG 364

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L       P V      + +  LI+G CK   LK ARE+   + + GL PNV+T+N LI 
Sbjct: 365 LK------PNV------VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLID 412

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
                G+MD+       FLL   +  TG+ P++ TYN LI  FC+ G V     +   + 
Sbjct: 413 AYGKAGRMDD------AFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEME 466

Query: 387 PSCFTPDAVTFTSLIKIL 404
            +    D VT+  L+  L
Sbjct: 467 GNGLKADLVTYNILVDAL 484



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 143/317 (45%), Gaps = 28/317 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +     K        +L K +    + P+  T+NILI+ FC+   V+    V
Sbjct: 262 PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKV 321

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + R    P+ VT+ SLI  LC+  ++ EA  L  K+   G + +V TYN LING C+
Sbjct: 322 FEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCK 381

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN--FLGFSCMASFS 265
                  L    EM +  G+ G+   P+ IT++T+ID   K AG  +  FL  S M    
Sbjct: 382 KK----MLKEAREMLDDIGKRGLA--PNVITFNTLIDAYGK-AGRMDDAFLLRSMMLDTG 434

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
               ++ Y              CLI G C+   +K AR+L + +   GL  ++VTYNIL+
Sbjct: 435 VCPNVSTYN-------------CLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILV 481

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
             LC  G+            L   +   GL P   TYN LI+ + + G  ++   +   +
Sbjct: 482 DALCKKGET------RKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLM 535

Query: 386 LPSCFTPDAVTFTSLIK 402
                  + VT+  LIK
Sbjct: 536 EKKGRRANIVTYNVLIK 552



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 133/308 (43%), Gaps = 24/308 (7%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           ++L     K    D  L  F R    G      + N ++    K GR+     V   ++R
Sbjct: 163 DMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIR 222

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
                + VTF  +I  LC   +  +A  +   ++ +G    V TYNT+I+G C+ G    
Sbjct: 223 RRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFK 282

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
           A  L +EM            P+ IT++ +IDG C++             + +A  K+   
Sbjct: 283 ADALLKEMV------AKRIHPNEITFNILIDGFCRD------------ENVTAAKKVFEE 324

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
                +Q   + +  LI+GLC   KL  A  L   +   GL PNVVTYN LI G C    
Sbjct: 325 MQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKM 384

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           + E +       +   +   GL P++ T+N LI+ + K GR+   F++   +L +   P+
Sbjct: 385 LKEARE------MLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPN 438

Query: 394 AVTFTSLI 401
             T+  LI
Sbjct: 439 VSTYNCLI 446



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 130/279 (46%), Gaps = 24/279 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++N L   L      D  L L  +++  GL P+  TYN LIN FCK   +     
Sbjct: 331 QPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEARE 390

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  I +    P+ +TF +LI       R+ +A  L + +   G   +V TYN LI G C
Sbjct: 391 MLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFC 450

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G+   A  L +EM  GNG      + D +TY+ ++D LCK+             +   
Sbjct: 451 REGNVKEARKLAKEME-GNG-----LKADLVTYNILVDALCKKG--------ETRKAVRL 496

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L++M   F  V +    L +  LIDG  +      A  +   + + G   N+VTYN+LI+
Sbjct: 497 LDEM---FE-VGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIK 552

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           G CN G+++E         L   +   GL P+  TY+IL
Sbjct: 553 GFCNKGKLEEANR------LLNEMLEKGLIPNRTTYDIL 585



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/254 (30%), Positives = 117/254 (46%), Gaps = 19/254 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL + D M  M   +P V ++N L     K K       +   +   GL P+  T+N 
Sbjct: 351 DEALGLQDKMSGM-GLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNT 409

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ + K GR+   F++   +L +   P+  T+  LI   C E  + EA  L  ++   G
Sbjct: 410 LIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNG 469

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D+ TYN L++ LC+ G T  A+ L +EM      F V   P  +TY+ +IDG  +E 
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEM------FEVGLNPSHLTYNALIDGYFREG 523

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            S            +ALN         R +   + +  LI G C   KL+ A  L   + 
Sbjct: 524 NST-----------AALNVRTLMEKKGR-RANIVTYNVLIKGFCNKGKLEEANRLLNEML 571

Query: 311 RAGLMPNVVTYNIL 324
             GL+PN  TY+IL
Sbjct: 572 EKGLIPNRTTYDIL 585



 Score = 45.1 bits (105), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 53/123 (43%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +  + ++NIL   L K       + L   +   GL P   TYN LI+ + + G  +    
Sbjct: 471 KADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALN 530

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   + +     + VT+  LIK  C + ++ EA  L  ++   G   +  TY+ L + + 
Sbjct: 531 VRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMM 590

Query: 207 RTG 209
             G
Sbjct: 591 EKG 593


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 156/360 (43%), Gaps = 51/360 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  VF  M++ +  +P   +F IL   L ++   +    L  R+   G  PD   YN 
Sbjct: 24  DKASAVFQEMID-KSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNA 82

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ + K       F  L  ++++   P  VT+T+++  LC   R  +A  L  ++R  G
Sbjct: 83  LISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKG 142

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +++TYN ++ GLC       A  + EEMA   G F     PD +TY++ I GLCK  
Sbjct: 143 CSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAV-RGYF-----PDVVTYNSFIKGLCK-- 194

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                           +++   +   + V    +++  +I+GLCK   L  A  +   + 
Sbjct: 195 -------------CDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMS 241

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETK----------------HYETVFLLFKRLNST- 353
             G  P+VVTY+ LI G C  G+++                    Y ++     RL    
Sbjct: 242 NRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIG 301

Query: 354 ------------GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                       G  PD+ +YN  I+  CK  RV     +F R++    TP+A +++ LI
Sbjct: 302 KAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLI 361



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 142/318 (44%), Gaps = 31/318 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++N L   L +   +D   ++F+ +      PD +T+ IL+   C+  ++     +LG
Sbjct: 7   VFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLG 66

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R+      PD   + +LI          +A     ++    C   V TY  +++GLC+  
Sbjct: 67  RMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAE 126

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
            T  A+ L +EM +        C P+  TY+ I++GLC+E             +   L +
Sbjct: 127 RTRDAVKLLDEMRDKG------CSPNIYTYNVIVEGLCEERKLDE--------AKKMLEE 172

Query: 270 MAF--YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           MA   YFP V      + +   I GLCK  ++  AR+    +P   + P+VV+Y  +I G
Sbjct: 173 MAVRGYFPDV------VTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVING 223

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G +D          +   +++ G  PD+ TY+ LI+ FCK G V     +   +L 
Sbjct: 224 LCKSGDLDSASR------MLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLK 277

Query: 388 SCFTPDAVTFTSLIKILE 405
               P+ V + SL+  L 
Sbjct: 278 LGCRPNMVAYNSLLGALH 295



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 148/327 (45%), Gaps = 34/327 (10%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P  P V S+  +   L K+   D+   +   ++  G  PD  TY+ LI+ FCK G V   
Sbjct: 209 PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERA 268

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             +L  +L+    P+ V + SL+  L     I +A  +  ++   G   DV +YN  I+G
Sbjct: 269 MGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDG 328

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII----------DGLCKEAGSAN 254
           LC+      A  +F+ M     E G  C P+A +YS +I          DGLCK      
Sbjct: 329 LCKAERVKKAKAVFDRMV----ERG--CTPNASSYSMLIVDILLYTVLLDGLCK----GG 378

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
               +C A FS +       P V        +  ++D  CK  ++  A ++ + +     
Sbjct: 379 RFDEAC-ALFSKVLDEKICEPDV------FFYNVMLDSHCKRRQIDKALQIHKQMLEKNC 431

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
             NVVT+NIL+ GLC D ++ +    ET+ L    +   G  PD  TY  L++  CK G+
Sbjct: 432 C-NVVTWNILVHGLCVDDRLSDA---ETMLLT---MVDEGFIPDFVTYGTLVDAMCKCGK 484

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLI 401
            ++   +F   +     PD VT+++LI
Sbjct: 485 SAAALELFEEAVKGGCVPDVVTYSALI 511



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 153/360 (42%), Gaps = 43/360 (11%)

Query: 57  CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
           CKS   GD+ S +      + D+M N R   P V +++ L     K    +  + L   +
Sbjct: 225 CKS---GDLDSASR-----MLDHMSN-RGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM 275

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
              G  P+   YN L+    ++G +     +L  + R  FTPD V++ + I  LC   R+
Sbjct: 276 LKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERV 335

Query: 177 MEAAALFTKLRVFGCE----------LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
            +A A+F ++   GC           +D+  Y  L++GLC+ G    A  LF ++ +   
Sbjct: 336 KKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEK- 394

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
               +CEPD   Y+ ++D  CK       L          ++K      L +  C  + +
Sbjct: 395 ----ICEPDVFFYNVMLDSHCKRRQIDKAL---------QIHKQM----LEKNCCNVVTW 437

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             L+ GLC   +L  A  +  ++   G +P+ VTY  L+  +C  G+            L
Sbjct: 438 NILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGK------SAAALEL 491

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406
           F+     G  PD+ TY+ LI            +++F +++   + PD  T   L + L++
Sbjct: 492 FEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLLHRKLKL 551



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 112/238 (47%), Gaps = 42/238 (17%)

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC- 247
            G E +VFTYN L+  L R      A  +F+EM + +      C+PDA T++ ++ GLC 
Sbjct: 1   MGYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKS------CQPDAFTFAILLRGLCR 54

Query: 248 --------------KEAG--------SANFLGFSCMASFSALNKMAFYFPLVRVQCL--C 283
                         KE G        +A   G+S    F    K  F   +V+  CL   
Sbjct: 55  SNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFK--FLAEMVKNHCLPTV 112

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           + +  ++DGLCK  + + A +L   +   G  PN+ TYN+++ GLC + ++DE K     
Sbjct: 113 VTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKK---- 168

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             + + +   G FPD+ TYN  I   CK  RV        R +P   TPD V++T++I
Sbjct: 169 --MLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLAR-MP--VTPDVVSYTTVI 221


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 144/335 (42%), Gaps = 59/335 (17%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           S +P  +L  F  ++ +R   P   +FN+L             LS   ++   GL PD  
Sbjct: 187 STSPQASLDAFHSLIALR-LHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAV 245

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           TYN L+N  C+ G +     +L R+ +    P   T+ +L+        I +A  +   +
Sbjct: 246 TYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAM 305

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
             FG E D++TYN L  GLC+ G    A  L +EM     + G+V  PD +TY+T++D  
Sbjct: 306 TAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEME----QLGIVS-PDVVTYNTLVDA- 359

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
           C          F C  S  ALN                                    L 
Sbjct: 360 C----------FKCQRSSDALN------------------------------------LL 373

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           + +   G+  ++VT+NI+++GLC +GQ++E           + +   GL PD+ TYN LI
Sbjct: 374 EEMREKGVKSSLVTHNIIVKGLCREGQLEE------ALGRLEMMTEEGLTPDVITYNTLI 427

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +  CK G V+  FV+   ++ S    D  T  +L+
Sbjct: 428 DASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLL 462



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 138/322 (42%), Gaps = 63/322 (19%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + + NI+   L +    +  L   + +   GL PD  TYN LI+  CK G V+  FV++ 
Sbjct: 385 LVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMD 444

Query: 150 RILRSC-----------------------------------FTPDAVTFTSLIKDLCAES 174
            ++RS                                    F PD V++ +++     E 
Sbjct: 445 EMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEY 504

Query: 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234
           +   A  L+ ++        + TYNTLI GL   G    A++   E+     E G+V  P
Sbjct: 505 KPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELM----EMGLV--P 558

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA--FYFPLVRVQCLCLNFLCLIDG 292
           D  TY+ II   CKE             +F   NKM    + P V V C       L++G
Sbjct: 559 DDTTYNIIIHAYCKEG--------DLEKAFQFHNKMVENSFKPDV-VTC-----NTLMNG 604

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LC   +L+ A +LF+S    G   +V+TYN LI+ LC D  +D      T    F  +  
Sbjct: 605 LCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVD------TALRFFADMEV 658

Query: 353 TGLFPDLYTYNILINCFCKIGR 374
            GL PD++TYN+L++   + GR
Sbjct: 659 RGLQPDVFTYNVLLSALSEAGR 680



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 142/363 (39%), Gaps = 47/363 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + D M  +    P V ++N L     K +     L+L + +   G+     T+NI
Sbjct: 331 DEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNI 390

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++   C+ G++      L  +     TPD +T+ +LI   C    + +A  L  ++   G
Sbjct: 391 IVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSG 450

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            ++D FT NTL+  LC+      A    EE+     + G V  PD ++Y T++    KE 
Sbjct: 451 LKMDTFTLNTLLYNLCKEKRYEEA----EELLRAPPQRGFV--PDEVSYGTVMAAYFKEY 504

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L   C+       K+    P +        +  LI GL  + KL  A +    L 
Sbjct: 505 KPEPAL---CLWDEMIKRKLT---PSIST------YNTLIKGLSTMGKLTEAIDKLNELM 552

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHY-----------------------------E 341
             GL+P+  TYNI+I   C +G +++   +                             E
Sbjct: 553 EMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLE 612

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               LF+     G   D+ TYN LI   CK   V +    F  +      PD  T+  L+
Sbjct: 613 KAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLL 672

Query: 402 KIL 404
             L
Sbjct: 673 SAL 675



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 130/307 (42%), Gaps = 34/307 (11%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P  ALC++D M+  R   P ++++N L   L+        +     L   GL PD  TYN
Sbjct: 506 PEPALCLWDEMIK-RKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYN 564

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           I+I+ +CK G +   F    +++ + F PD VT  +L+  LC   R+ +A  LF      
Sbjct: 565 IIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEK 624

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G ++DV TYNTLI  LC+      AL  F +M           +PD  TY+ ++  L  E
Sbjct: 625 GKKVDVITYNTLIQALCKDNDVDTALRFFADMEVRG------LQPDVFTYNVLLSALS-E 677

Query: 250 AGSANFLGFSCMASFSALNKMA-----FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           AG +             LN+       F++P ++           ++ +      ++  +
Sbjct: 678 AGRS----VEAQKMLHKLNESGKLYGRFFYPSIKSS---------VEAVETGKDPEVKSD 724

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +       G   +  +YN  I+ LC  GQ+ E K       +   +   G+  D  TY  
Sbjct: 725 IESVGNTQG--DDQESYNKYIKELCIGGQLKEAK------AVLDEMMQKGMSVDNSTYIT 776

Query: 365 LINCFCK 371
           L+    K
Sbjct: 777 LMEGLIK 783



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 31/257 (12%)

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAAL--FTKLRVFGCELDVFTYNTLINGLCRTGH 210
           R C  P      +++  L         A+L  F  L       + +T+N L++  C  G 
Sbjct: 165 RGCVRPSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGT 224

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALN 268
              AL+   +M      FG+   PDA+TY+T+++  C++   G A  L  + M     + 
Sbjct: 225 LADALSTLSKMQG----FGL--SPDAVTYNTLLNAHCRKGMLGEARTL-LARMKKEGIVP 277

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
             A Y               L+    ++  +K A ++ +++   G  P++ TYN+L  GL
Sbjct: 278 TRATYN-------------TLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGL 324

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLF-PDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           C  G++DE       F L   +   G+  PD+ TYN L++   K  R S    +   +  
Sbjct: 325 CQAGKVDE------AFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMRE 378

Query: 388 SCFTPDAVTFTSLIKIL 404
                  VT   ++K L
Sbjct: 379 KGVKSSLVTHNIIVKGL 395


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 159/364 (43%), Gaps = 36/364 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL V D ML  R   P V ++ IL     K   Y   + L   +   G  PD  TYN+++
Sbjct: 51  ALAVLDEMLRRR-CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVV 109

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  C+ GRV      L  +      P+ V++  ++K LC   R  +A  L  ++   GC 
Sbjct: 110 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP 169

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            +V T+N LI+ LCR G    AL + E++     ++G  C P++++Y+ ++   CK+   
Sbjct: 170 PNVVTFNMLISFLCRKGLVEPALEVLEQIP----KYG--CTPNSLSYNPLLHAFCKQKKM 223

Query: 253 ANFLGF-SCMASFSALNKMAFYFPLVRVQC----------------------LCLNFLCL 289
              + F   M S      +  Y  L+   C                      + +++  +
Sbjct: 224 DKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTV 283

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           IDGL K  K K A EL   +   GL P+++TY+ +  GLC + ++      E     F +
Sbjct: 284 IDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRI------EDAIRAFGK 337

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409
           +   G+ P+   YN +I   CK     S   +F  ++ +   P+  T+T LI+ L     
Sbjct: 338 VQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGL 397

Query: 410 FRQV 413
            ++ 
Sbjct: 398 IKEA 401



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 136/303 (44%), Gaps = 39/303 (12%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD YTYN LI   C  GR ++   VL  +LR    PD VT+T L++  C  S   +A  L
Sbjct: 30  PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKL 89

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             ++R  GC  D+ TYN ++NG+C+ G    A+   + + +    +G  CEP+ ++Y+ +
Sbjct: 90  LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPS----YG--CEPNTVSYNIV 143

Query: 243 IDGLC----------------KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
           + GLC                ++    N + F+ + SF  L +     P + V      +
Sbjct: 144 LKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISF--LCRKGLVEPALEVLEQIPKY 201

Query: 287 LC---------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            C         L+   CK  K+  A      +   G  P++V+YN L+  LC  G++D  
Sbjct: 202 GCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD-- 259

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   L  +L   G  P L +YN +I+   K G+      +   ++     PD +T+
Sbjct: 260 ----VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITY 315

Query: 398 TSL 400
           +++
Sbjct: 316 STI 318



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 143/340 (42%), Gaps = 35/340 (10%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P  P   ++N L   L         L++   +      PD  TY IL+   CK       
Sbjct: 27  PVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQA 86

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             +L  +     TPD VT+  ++  +C E R+ +A      L  +GCE +  +YN ++ G
Sbjct: 87  MKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKG 146

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE--------------- 249
           LC       A  L  EM    G+ G  C P+ +T++ +I  LC++               
Sbjct: 147 LCTAERWEDAEELMGEM----GQKG--CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK 200

Query: 250 -AGSANFLGFS-CMASFSALNK----MAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKI 301
              + N L ++  + +F    K    MAF   +V   C    +++  L+  LC+  ++ +
Sbjct: 201 YGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDV 260

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A EL   L   G  P +++YN +I GL   G+  E         L   + S GL PD+ T
Sbjct: 261 AVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEA------LELLNEMVSKGLQPDIIT 314

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           Y+ +    C+  R+      FG++      P+ V + ++I
Sbjct: 315 YSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAII 354



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 124/252 (49%), Gaps = 20/252 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN+L   L +    +  L + +++   G  P+  +YN L++ FCK  ++      
Sbjct: 170 PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAF 229

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  ++ R C+ PD V++ +L+  LC    +  A  L  +L+  GC   + +YNT+I+GL 
Sbjct: 230 LDLMVSRGCY-PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLT 288

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G T  AL L  EM +         +PD ITYSTI  GLC+E    +      + +F  
Sbjct: 289 KAGKTKEALELLNEMVSKG------LQPDIITYSTIAAGLCREDRIED-----AIRAFGK 337

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +  M      +R   +  N + L  GLCK  +   A +LF  +   G MPN  TY ILI 
Sbjct: 338 VQDMG-----IRPNTVLYNAIIL--GLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIE 390

Query: 327 GLCNDGQMDETK 338
           GL  +G + E +
Sbjct: 391 GLAYEGLIKEAR 402



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 31/211 (14%)

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             YN ++ G C  G    A  L  EM           EPDA TY+T+I GLC    +AN 
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMP---------VEPDAYTYNTLIRGLCGRGRTAN- 50

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
                  + + L++M      +R +C+   + +  L++  CK S  K A +L   +   G
Sbjct: 51  -------ALAVLDEM------LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKG 97

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
             P++VTYN+++ G+C +G++D+   +       K L S G  P+  +YNI++   C   
Sbjct: 98  CTPDIVTYNVVVNGICQEGRVDDAIEF------LKNLPSYGCEPNTVSYNIVLKGLCTAE 151

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           R      + G +      P+ VTF  LI  L
Sbjct: 152 RWEDAEELMGEMGQKGCPPNVVTFNMLISFL 182



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 61/149 (40%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + L  +   P + S+N +   L K       L L   +   GL PD  TY+ +    C+ 
Sbjct: 266 HQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 325

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
            R+       G++      P+ V + ++I  LC       A  LF  +   GC  +  TY
Sbjct: 326 DRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 385

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGE 227
             LI GL   G    A +L +E+ +  GE
Sbjct: 386 TILIEGLAYEGLIKEARDLLDELCSRAGE 414



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           + YN ++ G C  GQ+D  +         + +    + PD YTYN LI   C  GR ++ 
Sbjct: 1   MAYNAMVAGYCGAGQLDAAR---------RLVAEMPVEPDAYTYNTLIRGLCGRGRTANA 51

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
             +   +L     PD VT+T L++     S ++Q 
Sbjct: 52  LAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQA 86


>gi|302761606|ref|XP_002964225.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
 gi|300167954|gb|EFJ34558.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
          Length = 580

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 163/354 (46%), Gaps = 44/354 (12%)

Query: 71  NEALCVFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +EAL +++ M   R +  P  + ++N +  C++K    +    + K +  +   PD++ Y
Sbjct: 190 DEALRLYELM---RGNNVPADIFTYNNMIECISKLGMVEQAEKVLKTMEESDCKPDKFIY 246

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
             +IN FCK+G   +  V+LGR+  + + PDAV F  +I  LC  S+  EA  +      
Sbjct: 247 TRVINGFCKLGNFKNAVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIE 306

Query: 189 FGCELDVFT----------------YNTLINGLCRTGHTIVALNLFEEMANGNGEF---- 228
            GCE D  T                Y+ L+  LC+TG    A  L E++ NG+ E     
Sbjct: 307 AGCEPDEVTYFKLAQERKCPATNLLYSRLMKCLCKTGKVEAACQLLEDLTNGSRESEQLL 366

Query: 229 -GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
            G  C+PD + YS +ID LC  A      GF  + +               V+   + + 
Sbjct: 367 GGDGCKPDVVMYSIVIDALC--AMGMTDEGFVVVKAMEERG----------VKPDAVVYT 414

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
             +   C+ ++L  A  L + +  AG  P+V++YN L+  LC+ GQ +E         LF
Sbjct: 415 IFLYAFCRSARLDDACRLLEMMVEAGCYPDVISYNTLLFALCSAGQEEEACR------LF 468

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + +  TG+ P+++TY  LI   C   ++     +F  +  S   PD  T+ +LI
Sbjct: 469 QVMVETGIEPNVFTYTQLIRALCSTKKLEGARHLFNFMKLSKCVPDMETYKALI 522



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 133/334 (39%), Gaps = 43/334 (12%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           P   +N++FG LAK + +  V  + + L          T + L+  FCK   V      L
Sbjct: 100 PAHIYNVIFGALAKLQRFQDVFRMVEDLMAKNFTFSDSTADALVRIFCKALAVDKAVRFL 159

Query: 149 GRILRSCFTPDAVTF--TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
             +          TF    LI+ LC   RI EA  L+  +R      D+FTYN +I  + 
Sbjct: 160 KWMSSKGLQVAMSTFEYNCLIEGLCKGDRIDEALRLYELMRGNNVPADIFTYNNMIECIS 219

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFS 265
           + G    A  + + M   +      C+PD   Y+ +I+G CK       LG F       
Sbjct: 220 KLGMVEQAEKVLKTMEESD------CKPDKFIYTRVINGFCK-------LGNFKNAVVLL 266

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT----- 320
              K A Y P   V      F C+I GLCK SK   A  + +    AG  P+ VT     
Sbjct: 267 GRMKEAGYAPDAVV------FDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVTYFKLA 320

Query: 321 -----------YNILIRGLCNDGQMDETKHYETVFLLFKR-----LNSTGLFPDLYTYNI 364
                      Y+ L++ LC  G+++             R     L   G  PD+  Y+I
Sbjct: 321 QERKCPATNLLYSRLMKCLCKTGKVEAACQLLEDLTNGSRESEQLLGGDGCKPDVVMYSI 380

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
           +I+  C +G    GFV+   +      PDAV +T
Sbjct: 381 VIDALCAMGMTDEGFVVVKAMEERGVKPDAVVYT 414



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 116/287 (40%), Gaps = 22/287 (7%)

Query: 115 RLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174
           + N +    D   YN ++       R+S    VLG ++    + +      L+      +
Sbjct: 21  KQNRSSYKHDSRIYNQVVRNLAAAKRLSDIDSVLGEMMDQGCSLEPEAALDLVVCYANGA 80

Query: 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234
            +  A A+F +LR  G E     YN +   L +         + E++   N  F      
Sbjct: 81  MVDRAQAIFNELRHQGQEFPAHIYNVIFGALAKLQRFQDVFRMVEDLMAKNFTF-----S 135

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           D+ T   ++   CK       + F    S   L          +V      + CLI+GLC
Sbjct: 136 DS-TADALVRIFCKALAVDKAVRFLKWMSSKGL----------QVAMSTFEYNCLIEGLC 184

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K  ++  A  L++ +    +  ++ TYN +I  +   G +++ +       + K +  + 
Sbjct: 185 KGDRIDEALRLYELMRGNNVPADIFTYNNMIECISKLGMVEQAEK------VLKTMEESD 238

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             PD + Y  +IN FCK+G   +  V+ GR+  + + PDAV F  +I
Sbjct: 239 CKPDKFIYTRVINGFCKLGNFKNAVVLLGRMKEAGYAPDAVVFDCII 285



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 62/144 (43%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R  +P    + I      ++   D    L + +   G +PD  +YN L+   C  G+
Sbjct: 401 MEERGVKPDAVVYTIFLYAFCRSARLDDACRLLEMMVEAGCYPDVISYNTLLFALCSAGQ 460

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +   ++ +   P+  T+T LI+ LC+  ++  A  LF  +++  C  D+ TY  
Sbjct: 461 EEEACRLFQVMVETGIEPNVFTYTQLIRALCSTKKLEGARHLFNFMKLSKCVPDMETYKA 520

Query: 201 LINGLCRTGHTIVALNLFEEMANG 224
           LI G  +      A  L E+ ++ 
Sbjct: 521 LILGHYQNEGVREARQLLEQESDA 544


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 149/355 (41%), Gaps = 51/355 (14%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           FD M     S P V ++  +          +  + L   +   GL  +   Y  +I   C
Sbjct: 278 FDEM----SSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLC 333

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
             G+VS    VL  +       DAV FT++I   C++  +  A  LF +++  G   D  
Sbjct: 334 NKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRV 393

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           T+  LINGLCR G    A  + +EM +   +       D +TY+ +IDG CK        
Sbjct: 394 THTALINGLCRAGELKEADRVLQEMVDKGLDV------DVVTYTVLIDGYCKRG------ 441

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
             + + +F   N+M       RV    + +  L DGLCK   ++ A EL   +   GL  
Sbjct: 442 --NMVEAFRVHNEMVGR----RVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLEL 495

Query: 317 NVVTYNILIRGLCNDG----------QMDETKHYETVFL-------------------LF 347
           NV TYN LI GLC  G          +M+   H   V+                    + 
Sbjct: 496 NVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNML 555

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + +   G+ P + TYN+L+N FC  GRV  G  +   +L     P+ VT+ SL+K
Sbjct: 556 QEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMK 610



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 138/295 (46%), Gaps = 26/295 (8%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           GL  D  TY +LI+ +CK G +   F V   ++     P+ VT+T+L   LC +  +  A
Sbjct: 422 GLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAA 481

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAIT 238
             L  ++   G EL+V+TYN+LINGLC+ G+   A+ +  EM A G+         D  T
Sbjct: 482 NELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGH-------RTDVYT 534

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+T+ID LCK               F   + M        ++     +  L++G C   +
Sbjct: 535 YTTLIDTLCKS------------GEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGR 582

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           ++  ++L + +    + PNVVTYN L++  C D  M  T        ++K ++S  + P+
Sbjct: 583 VEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTE------IYKGMHSQEVAPN 636

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
             TYNILI   CK   +         ++       A ++++LI++L     F + 
Sbjct: 637 ENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEA 691



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 122/300 (40%), Gaps = 31/300 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  V + M+  R + P V ++  L   L K         L   +   GL  + YTYN L
Sbjct: 445 EAFRVHNEMVGRRVA-PNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSL 503

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK G +     ++  +  +    D  T+T+LI  LC       A  +  ++   G 
Sbjct: 504 INGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGI 563

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KE 249
           +  + TYN L+NG C +G       L E M   N        P+ +TY++++   C  K 
Sbjct: 564 KPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKN------VRPNVVTYNSLMKQYCIDKN 617

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
             S   +     +   A N+  +                LI G CK   +K A    Q +
Sbjct: 618 MKSTTEIYKGMHSQEVAPNENTYNI--------------LIKGHCKARNMKEALYFHQEM 663

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF--PDLYTYNILIN 367
              GL     +Y+ LIR L      ++ K +    + F ++ + GL   PD+Y++ + I+
Sbjct: 664 IEKGLRLTASSYSALIRLL------NKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDIS 717


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 166/387 (42%), Gaps = 61/387 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFN-ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           EAL +++ M+  R   P V S N I++G   + K  D    L   L    L PD  +YN 
Sbjct: 325 EALALWEEMVT-RGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLK-KNLMPDIISYNT 382

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  FC++G +   F++L  +     + + VT+ +LI  LC    +  A  L   +   G
Sbjct: 383 LIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRG 442

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMAN---------------GNGEFGVVCE-- 233
              DV TY  L+NG C+ G+ ++A   F+EM +               G  + G   +  
Sbjct: 443 IHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAF 502

Query: 234 ------------PDAITYSTIIDGLCK-----EAGS-----------------ANFLGFS 259
                       PD ITY+  ++GLCK     EAG                   +F+   
Sbjct: 503 KLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAH 562

Query: 260 CMASFSALNKMAFYFPLVRVQC-LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                    +  FY  L R Q    + +  LI       +L  A   F  +   G++PNV
Sbjct: 563 MENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNV 622

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           +TYN+LI G C   +MD+   +      F  +   G+FP+ YTY ILIN  C +G+    
Sbjct: 623 ITYNVLINGFCKVRKMDQACKF------FIEMQEKGIFPNKYTYTILINENCNMGKWQEA 676

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKILE 405
             ++ ++L     PD+ T  +L+K L+
Sbjct: 677 LRLYAQMLGKRIRPDSCTHGALLKKLD 703



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 171/394 (43%), Gaps = 61/394 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           + L VF+ M+  R   P V + N +   L         L +++ +   G+ P   TYN +
Sbjct: 185 QCLLVFEKMMRNR-FLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTM 243

Query: 132 INCFCKMGRVSHGFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++ FCK G V     ++ ++  R C+ P  VTF  LI  L  +  + +A  L  ++   G
Sbjct: 244 LHSFCKGGEVQRALDLVPKMQERGCY-PSEVTFNVLINGLSKKGELQQAKGLIQEMAKAG 302

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             +  +TYN LI G C+ G  + AL L+EEM       GV   P   +++TI+ G CKE 
Sbjct: 303 LRVSPYTYNPLICGYCKKGLLVEALALWEEMVTR----GV--SPTVASHNTIMYGFCKEG 356

Query: 251 GSAN-------FLGFSCMASFSALNKMAFYF-------------PLVRVQCLCLNFLC-- 288
             ++        L  + M    + N + + F               +R + L  N +   
Sbjct: 357 KMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYN 416

Query: 289 -LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-------DETKHY 340
            LIDGLC++  L+ A +L + +   G+ P+VVTY +L+ G C  G M       DE  H 
Sbjct: 417 TLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHV 476

Query: 341 ----------------------ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
                                    F L + + + G  PD+ TYN+ +N  CK+G +   
Sbjct: 477 GLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEA 536

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
             +  +++     PD VT+TS +     N   R+
Sbjct: 537 GELLQKMIRDGHVPDHVTYTSFMHAHMENGHLRE 570



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 139/301 (46%), Gaps = 28/301 (9%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           L+L++ +   G+ P   ++N ++  FCK G++S     L  +L+    PD +++ +LI  
Sbjct: 327 LALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYG 386

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
            C    I EA  L  +LR      ++ TYNTLI+GLCR G    AL L E+M N      
Sbjct: 387 FCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRG---- 442

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL-- 287
               PD +TY+ +++G CK       LG   MA         F+  ++ V      F   
Sbjct: 443 --IHPDVVTYTVLVNGACK-------LGNMLMAK-------EFFDEMLHVGLAPDQFAYT 486

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
             I G  K+     A +L + +   G  P+V+TYN+ + GLC  G ++E         L 
Sbjct: 487 ARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGE------LL 540

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           +++   G  PD  TY   ++   + G +  G  IF  +L    TP  VT+T LI    +N
Sbjct: 541 QKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALN 600

Query: 408 S 408
            
Sbjct: 601 G 601



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 133/324 (41%), Gaps = 25/324 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL + + M+N R   P V ++ +L     K  +       F  +   GL PD++ Y   I
Sbjct: 431 ALKLKEDMIN-RGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARI 489

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
               K+G  +  F +   +L   F PD +T+   +  LC    + EA  L  K+   G  
Sbjct: 490 VGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHV 549

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D  TY + ++     GH      +F +M +  G+      P  +TY+ +I      A +
Sbjct: 550 PDHVTYTSFMHAHMENGHLREGREIFYDMLS-RGQ-----TPTVVTYTVLI-----HAHA 598

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
            N      MA F  + +     P V      + +  LI+G CK+ K+  A + F  +   
Sbjct: 599 LNGRLDWAMAYFLEMQEKGV-VPNV------ITYNVLINGFCKVRKMDQACKFFIEMQEK 651

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+ PN  TY ILI   CN G+  E         L+ ++    + PD  T+  L+    K 
Sbjct: 652 GIFPNKYTYTILINENCNMGKWQEA------LRLYAQMLGKRIRPDSCTHGALLKKLDKD 705

Query: 373 GRVSSGFVIFGRILPSCFTPDAVT 396
            +V +   I   IL    T DA T
Sbjct: 706 YKVQAVQFIESLILDGDRTIDANT 729


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 159/364 (43%), Gaps = 36/364 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL V D ML  R   P V ++ IL     K   Y   + L   +   G  PD  TYN+++
Sbjct: 177 ALAVLDEMLRRR-CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVV 235

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  C+ GRV      L  +      P+ V++  ++K LC   R  +A  L  ++   GC 
Sbjct: 236 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP 295

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            +V T+N LI+ LCR G    AL + E++     ++G  C P++++Y+ ++   CK+   
Sbjct: 296 PNVVTFNMLISFLCRKGLVEPALEVLEQIP----KYG--CTPNSLSYNPLLHAFCKQKKM 349

Query: 253 ANFLGF-SCMASFSALNKMAFYFPLVRVQC----------------------LCLNFLCL 289
              + F   M S      +  Y  L+   C                      + +++  +
Sbjct: 350 DKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTV 409

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           IDGL K  K K A EL   +   GL P+++TY+ +  GLC + ++      E     F +
Sbjct: 410 IDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRI------EDAIRAFGK 463

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409
           +   G+ P+   YN +I   CK     S   +F  ++ +   P+  T+T LI+ L     
Sbjct: 464 VQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGL 523

Query: 410 FRQV 413
            ++ 
Sbjct: 524 IKEA 527



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 146/338 (43%), Gaps = 42/338 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +          D    L   + +    PD YTYN LI   C  GR ++   V
Sbjct: 124 PDVMAYNAMVAGYCGAGQLDAARRLVAEMPVE---PDAYTYNTLIRGLCGRGRTANALAV 180

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +LR    PD VT+T L++  C  S   +A  L  ++R  GC  D+ TYN ++NG+C+
Sbjct: 181 LDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQ 240

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK------------EAGSA-- 253
            G    A+   + + +    +G  CEP+ ++Y+ ++ GLC             E G    
Sbjct: 241 EGRVDDAIEFLKNLPS----YG--CEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGC 294

Query: 254 --NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC---------LIDGLCKISKLKIA 302
             N + F+ + SF  L +     P + V      + C         L+   CK  K+  A
Sbjct: 295 PPNVVTFNMLISF--LCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKA 352

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
                 +   G  P++V+YN L+  LC  G++D          L  +L   G  P L +Y
Sbjct: 353 MAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD------VAVELLHQLKDKGCAPVLISY 406

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           N +I+   K G+      +   ++     PD +T++++
Sbjct: 407 NTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTI 444



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 143/340 (42%), Gaps = 35/340 (10%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P  P   ++N L   L         L++   +      PD  TY IL+   CK       
Sbjct: 153 PVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQA 212

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             +L  +     TPD VT+  ++  +C E R+ +A      L  +GCE +  +YN ++ G
Sbjct: 213 MKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKG 272

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE--------------- 249
           LC       A  L  EM    G+ G  C P+ +T++ +I  LC++               
Sbjct: 273 LCTAERWEDAEELMGEM----GQKG--CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK 326

Query: 250 -AGSANFLGFS-CMASFSALNK----MAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKI 301
              + N L ++  + +F    K    MAF   +V   C    +++  L+  LC+  ++ +
Sbjct: 327 YGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDV 386

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A EL   L   G  P +++YN +I GL   G+  E         L   + S GL PD+ T
Sbjct: 387 AVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEA------LELLNEMVSKGLQPDIIT 440

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           Y+ +    C+  R+      FG++      P+ V + ++I
Sbjct: 441 YSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAII 480



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 115/257 (44%), Gaps = 36/257 (14%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R++ S   PDA T  +LIK L A  R  EA  +        C  DV  YN ++ G C  G
Sbjct: 86  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLA-----ACGPDVMAYNAMVAGYCGAG 140

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A  L  EM           EPDA TY+T+I GLC    +AN L             
Sbjct: 141 QLDAARRLVAEMP---------VEPDAYTYNTLIRGLCGRGRTANAL------------- 178

Query: 270 MAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            A    ++R +C+   + +  L++  CK S  K A +L   +   G  P++VTYN+++ G
Sbjct: 179 -AVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNG 237

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           +C +G++D+   +       K L S G  P+  +YNI++   C   R      + G +  
Sbjct: 238 ICQEGRVDDAIEF------LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQ 291

Query: 388 SCFTPDAVTFTSLIKIL 404
               P+ VTF  LI  L
Sbjct: 292 KGCPPNVVTFNMLISFL 308



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 124/252 (49%), Gaps = 20/252 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN+L   L +    +  L + +++   G  P+  +YN L++ FCK  ++      
Sbjct: 296 PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAF 355

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  ++ R C+ PD V++ +L+  LC    +  A  L  +L+  GC   + +YNT+I+GL 
Sbjct: 356 LDLMVSRGCY-PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLT 414

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G T  AL L  EM +         +PD ITYSTI  GLC+E    +      + +F  
Sbjct: 415 KAGKTKEALELLNEMVSKG------LQPDIITYSTIAAGLCREDRIED-----AIRAFGK 463

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +  M      +R   +  N + L  GLCK  +   A +LF  +   G MPN  TY ILI 
Sbjct: 464 VQDMG-----IRPNTVLYNAIIL--GLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIE 516

Query: 327 GLCNDGQMDETK 338
           GL  +G + E +
Sbjct: 517 GLAYEGLIKEAR 528



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 7/180 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+   D M++ R   P + S+N L   L ++   D  + L  +L   G  P   +YN 
Sbjct: 350 DKAMAFLDLMVS-RGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNT 408

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+   K G+      +L  ++     PD +T++++   LC E RI +A   F K++  G
Sbjct: 409 VIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMG 468

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +   YN +I GLC+   T  A++LF  M  GNG     C P+  TY+ +I+GL  E 
Sbjct: 469 IRPNTVLYNAIILGLCKRRETHSAIDLFAYMI-GNG-----CMPNESTYTILIEGLAYEG 522



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 58/143 (40%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + L  +   P + S+N +   L K       L L   +   GL PD  TY+ +    C+ 
Sbjct: 392 HQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 451

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
            R+       G++      P+ V + ++I  LC       A  LF  +   GC  +  TY
Sbjct: 452 DRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 511

Query: 199 NTLINGLCRTGHTIVALNLFEEM 221
             LI GL   G    A +L +E+
Sbjct: 512 TILIEGLAYEGLIKEARDLLDEL 534



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+V+ YN ++ G C  GQ+D  +           +    + PD YTYN LI   C  GR 
Sbjct: 124 PDVMAYNAMVAGYCGAGQLDAARRL---------VAEMPVEPDAYTYNTLIRGLCGRGRT 174

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           ++   +   +L     PD VT+T L++     S ++Q 
Sbjct: 175 ANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQA 212


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 146/313 (46%), Gaps = 26/313 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FN+L     K     +   +F  +   GL P   ++N LI+  CK G V  GF + G + 
Sbjct: 145 FNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVME 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                PD  TF++LI  LC E R+ E + LF ++   G   +  T+  LI+G C+ G   
Sbjct: 205 SERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVD 264

Query: 213 VALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
           +AL  F+ M A G         PD +TY+ +I+GLCK            +       ++ 
Sbjct: 265 LALKNFQMMLAQG-------VRPDLVTYNALINGLCK------------VGDLKEARRLV 305

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
                  ++   + F  LIDG CK   ++ A E+ + +   G+  + V + +LI GLC D
Sbjct: 306 NEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRD 365

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G++ + +       + + + S G  PD  TY ++++CFCK G V  GF +   +      
Sbjct: 366 GRVHDAER------MLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHV 419

Query: 392 PDAVTFTSLIKIL 404
           P  VT+ +L+  L
Sbjct: 420 PGVVTYNALMNGL 432



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 152/348 (43%), Gaps = 37/348 (10%)

Query: 57  CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
           CK  G G         A  VFD  +  R  RP V SFN L     K    +    L   +
Sbjct: 153 CKVGGVG--------SARLVFDE-IPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVM 203

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
               + PD +T++ LIN  CK GR+  G ++   +      P+ VTFT LI   C   ++
Sbjct: 204 ESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKV 263

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
             A   F  +   G   D+ TYN LINGLC+ G    A  L  EM+           PD 
Sbjct: 264 DLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASG------LRPDR 317

Query: 237 ITYSTIIDGLCK--EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           IT++T+IDG CK  +  SA  +    +     L+ +AF                LI GLC
Sbjct: 318 ITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTV--------------LISGLC 363

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           +  ++  A  + + +  AG  P+  TY +++   C  G +         F L K + S G
Sbjct: 364 RDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNV------XMGFKLLKEMQSDG 417

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             P + TYN L+N  CK G+V +  ++   +L     P+ +T+  L++
Sbjct: 418 HVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLE 465



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 135/283 (47%), Gaps = 24/283 (8%)

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
           +G  P+ + +N+L++ FCK+G V    +V   I +    P  V+F +LI   C    + E
Sbjct: 136 SGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEE 195

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
              L   +       DVFT++ LINGLC+ G       LF+EM       G+V  P+ +T
Sbjct: 196 GFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGK----GLV--PNGVT 249

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           ++ +IDG CK  G  +      + +F  +        LV        +  LI+GLCK+  
Sbjct: 250 FTVLIDGQCK-GGKVDL----ALKNFQMMLAQGVRPDLV-------TYNALINGLCKVGD 297

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           LK AR L   +  +GL P+ +T+  LI G C  G M      E+   + +R+   G+  D
Sbjct: 298 LKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDM------ESALEIKRRMVEEGIELD 351

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              + +LI+  C+ GRV     +   +L + F PD  T+T ++
Sbjct: 352 DVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVV 394



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 136/298 (45%), Gaps = 30/298 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E   +FD M   +   P   +F +L     K    D  L  F+ +   G+ PD  TYN 
Sbjct: 229 DEGSLLFDEMCG-KGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNA 287

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK+G +     ++  +  S   PD +TFT+LI   C    +  A  +  ++   G
Sbjct: 288 LINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEG 347

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            ELD   +  LI+GLCR G    A  +  +M +         +PD  TY+ ++D  CK+ 
Sbjct: 348 IELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAG------FKPDDPTYTMVVDCFCKKG 401

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                +GF  +    +      + P V      + +  L++GLCK  ++K A+ L  ++ 
Sbjct: 402 NVX--MGFKLLKEMQSDG----HVPGV------VTYNALMNGLCKQGQVKNAKMLLDAML 449

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL-LFKRLNSTGLFPDLYTYNILIN 367
             G+ PN +TYNIL+ G         +KH  +V + +F   +  GL  D  +Y  L+N
Sbjct: 450 NVGVAPNDITYNILLEG--------HSKHGSSVDVDIFN--SEKGLVKDYASYTALVN 497



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 126/289 (43%), Gaps = 30/289 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F+ L   L K    D    LF  +   GL P+  T+ +LI+  CK G+V      
Sbjct: 210 PDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKN 269

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L     PD VT+ +LI  LC    + EA  L  ++   G   D  T+ TLI+G C+
Sbjct: 270 FQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCK 329

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---GSANFLGFSCMASF 264
            G    AL +   M     E G+  E D + ++ +I GLC++     +   L     A F
Sbjct: 330 YGDMESALEIKRRMV----EEGI--ELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGF 383

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
              +                 +  ++D  CK   + +  +L + +   G +P VVTYN L
Sbjct: 384 KPDDP---------------TYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNAL 428

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           + GLC  GQ+   K      +L   + + G+ P+  TYNIL+    K G
Sbjct: 429 MNGLCKQGQVKNAK------MLLDAMLNVGVAPNDITYNILLEGHSKHG 471



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 119/258 (46%), Gaps = 30/258 (11%)

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +L S + P+   F  L+   C    +  A  +F ++   G    V ++NTLI+G C+ G
Sbjct: 132 EVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAG 191

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
                  L      G  E   VC PD  T+S +I+GLCKE                 L++
Sbjct: 192 AVEEGFRL-----KGVMESERVC-PDVFTFSALINGLCKEG---------------RLDE 230

Query: 270 MAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            +  F  +  + L  N   F  LIDG CK  K+ +A + FQ +   G+ P++VTYN LI 
Sbjct: 231 GSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALIN 290

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G + E +       L   ++++GL PD  T+  LI+  CK G + S   I  R++
Sbjct: 291 GLCKVGDLKEARR------LVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMV 344

Query: 387 PSCFTPDAVTFTSLIKIL 404
                 D V FT LI  L
Sbjct: 345 EEGIELDDVAFTVLISGL 362



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 33/61 (54%)

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           E  +  +  +  +G  P+ + +N+L++ FCK+G V S  ++F  I      P  V+F +L
Sbjct: 124 ERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTL 183

Query: 401 I 401
           I
Sbjct: 184 I 184


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 147/343 (42%), Gaps = 47/343 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N +   L K++  +     F  +   GL PD  TYN ++N +CK G +     +
Sbjct: 347 PTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWL 406

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG + R+   P  +T+ +LI   C    + EA  L  ++   GC  DV TY  L+NG  +
Sbjct: 407 LGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHK 466

Query: 208 TGHTIVALNLFEEMANGNGE---FGV---VCE-----------------------PDAIT 238
             +  +A   F+EM +   +   F     +C                        PD +T
Sbjct: 467 VRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVT 526

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+ IIDGLCK     +            L            Q  C+ + CLI   C+   
Sbjct: 527 YNVIIDGLCKTGNLKDAKDLKMKMVSDGL------------QPDCITYTCLIHAHCERGL 574

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           L  AR+L   +   GL P+VVTY ILI   C  G +       + +  F+++   G+ P+
Sbjct: 575 LSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNL------YSAYGWFRKMLDVGIEPN 628

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             TYN+LI+  C+ GR    +  F  +L     P+  T+T LI
Sbjct: 629 EITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLI 671



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 146/347 (42%), Gaps = 36/347 (10%)

Query: 82  NMRPSRPPVT-SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +MR S+   + ++N L   L +      V +L   +   G+ P   TYN +I+   K  +
Sbjct: 305 SMRLSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQ 364

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V    +    +      PD +T+ S++   C    + EA  L   LR  G    V TYNT
Sbjct: 365 VEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNT 424

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-----------E 249
           LI+G CR G    A  L EEM          C PD  TY+ +++G  K           +
Sbjct: 425 LIDGYCRLGGLEEARRLKEEMVEQG------CFPDVCTYTILMNGSHKVRNLPMAREFFD 478

Query: 250 AGSANFLGFSCMASFSA------LNKMAFYFPLVRVQCL------CLNFLCLIDGLCKIS 297
              +  L   C A  +       L      F L  V  L       + +  +IDGLCK  
Sbjct: 479 EMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTG 538

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
            LK A++L   +   GL P+ +TY  LI   C  G + E +       L   + S GL P
Sbjct: 539 NLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARK------LLNGMVSDGLQP 592

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            + TY ILI+  C+ G + S +  F ++L     P+ +T+  LI  L
Sbjct: 593 SVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHAL 639



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 130/323 (40%), Gaps = 50/323 (15%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           L+ F+ +   G+ PD    N ++       R      V   +L+    P  VT+ +L+  
Sbjct: 193 LAAFRVVACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDS 252

Query: 170 LCAESRIMEAAALFTKLRVFG--CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG- 226
              E R  EA+ L  ++   G  C L+  TYN +I+ L R GH   A  L + M      
Sbjct: 253 FLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLSKKA 312

Query: 227 -------------EFGVVCE--------------PDAITYSTIIDGLCK-EAGSANFLGF 258
                        E G V +              P  +TY+ II GL K E   A  L F
Sbjct: 313 SSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKF 372

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
           + M +   L  +             + +  +++G CK   LK A  L   L RAGL P V
Sbjct: 373 AEMRAMGLLPDL-------------ITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTV 419

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           +TYN LI G C  G ++E +       L + +   G FPD+ TY IL+N   K+  +   
Sbjct: 420 LTYNTLIDGYCRLGGLEEARR------LKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMA 473

Query: 379 FVIFGRILPSCFTPDAVTFTSLI 401
              F  +L     PD   + + I
Sbjct: 474 REFFDEMLSKGLQPDCFAYNTRI 496



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 6/167 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N++   L KT +      L  ++   GL PD  TY  LI+  C+ G +S    +
Sbjct: 522 PDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKL 581

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     P  VT+T LI   C    +  A   F K+   G E +  TYN LI+ LCR
Sbjct: 582 LNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCR 641

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           TG T++A + F EM     E G+   P+  TY+ +IDG C+E   A+
Sbjct: 642 TGRTLLAYHHFHEML----ERGLA--PNKYTYTLLIDGNCREGNWAD 682



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 114/284 (40%), Gaps = 24/284 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++ IL     K ++       F  +   GL PD + YN  I     +G     F +
Sbjct: 452 PDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQL 511

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++     PD VT+  +I  LC    + +A  L  K+   G + D  TY  LI+  C 
Sbjct: 512 REVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCE 571

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  L       NG      +P  +TY+ +I   C+          +  +++   
Sbjct: 572 RGLLSEARKLL------NGMVSDGLQPSVVTYTILIHTCCRRG--------NLYSAYGWF 617

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            KM      V ++   + +  LI  LC+  +  +A   F  +   GL PN  TY +LI G
Sbjct: 618 RKMLD----VGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDG 673

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            C +G      ++     L+  ++  G+ PD  T+N L   F K
Sbjct: 674 NCREG------NWADAIRLYFEMHQNGIPPDYCTHNALFKGFDK 711



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 98/225 (43%), Gaps = 23/225 (10%)

Query: 118 LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177
           L G++PD  TYN++I+  CK G +     +  +++     PD +T+T LI   C    + 
Sbjct: 517 LKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLS 576

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           EA  L   +   G +  V TY  LI+  CR G+   A   F +M +      V  EP+ I
Sbjct: 577 EARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLD------VGIEPNEI 630

Query: 238 TYSTIIDGLCKEAGSA-NFLGFSCMASFS-ALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
           TY+ +I  LC+   +   +  F  M     A NK  +                LIDG C+
Sbjct: 631 TYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTL--------------LIDGNCR 676

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
                 A  L+  + + G+ P+  T+N L +G  + G M     Y
Sbjct: 677 EGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF-DKGHMYHAIEY 720



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 1/138 (0%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++ IL     +  +  +    F+++   G+ P+  TYN+LI+  C+ GR    + 
Sbjct: 591 QPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYH 650

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
               +L     P+  T+T LI   C E    +A  L+ ++   G   D  T+N L  G  
Sbjct: 651 HFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFD 710

Query: 207 RTGHTIVALNLFEEMANG 224
           + GH   A+   E +  G
Sbjct: 711 K-GHMYHAIEYLENIVLG 727


>gi|297724097|ref|NP_001174412.1| Os05g0393900 [Oryza sativa Japonica Group]
 gi|255676341|dbj|BAH93140.1| Os05g0393900 [Oryza sativa Japonica Group]
          Length = 553

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/380 (28%), Positives = 176/380 (46%), Gaps = 34/380 (8%)

Query: 38  TLRLTVKDRASLEQFLKERCKSSGEGDITSIT-PNEALCVFDYMLNMRPSRPPVTSFNIL 96
            L L  + RA L +     C ++    ++S + P  AL V D M       P   +  +L
Sbjct: 85  ALHLLDEMRALLRRRPDAACFTTVAAALSSASRPGAALAVLDAM-AADGVAPDAAACTVL 143

Query: 97  FGCLA-KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
            G  A + + +D    + + +   G+ PD  TY+ LI+  C  G+V+    VL  +L   
Sbjct: 144 VGVYACRLRRFDAAYEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEG 203

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG--HTIV 213
             P+A T+T ++   C   RI EA  L   +   G      TYN L+  LC+ G    + 
Sbjct: 204 CQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVD 263

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
           AL L E  A G         PD ITYS+ +DGLCK AG  +        SF+ ++KM   
Sbjct: 264 AL-LEESTAKG-------WTPDVITYSSYMDGLCK-AGRID-------KSFALVDKM--L 305

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
              ++   + LN   L+DG+C+ S    A+ L +     G   NVV YN ++R LC++  
Sbjct: 306 SNGLQPSEVTLNI--LLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRKLCDE-- 361

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
                 + +V  LF  +   G+ P+ +T+NI+++  CK+GR+     +   +    F   
Sbjct: 362 ----HRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKALFL---LRSKEFVAT 414

Query: 394 AVTFTSLIKILEINSFFRQV 413
            +T+ +LI+ L I+    +V
Sbjct: 415 VITYNTLIRHLSISGEGNEV 434



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 151/351 (43%), Gaps = 44/351 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++ L   L         L +   +   G  P+ +TY  +++ +C  GR+     +
Sbjct: 171 PDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRL 230

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++ S F P   T+  L++ LC      E  AL  +    G   DV TY++ ++GLC+
Sbjct: 231 LNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCK 290

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKE--AGSANFLGFSCMASF 264
            G    +  L ++M +NG        +P  +T + ++DG+C+   A +A  L   C A  
Sbjct: 291 AGRIDKSFALVDKMLSNG-------LQPSEVTLNILLDGVCRSSTAWAAKRL-LECSAEL 342

Query: 265 SALNKMAFYFPLVRVQCLCLNFLC----------------------LIDGLCKISKLKIA 302
                +  Y  ++R  C    +L                       ++  LCK+ +L  A
Sbjct: 343 GWDANVVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLGRLHKA 402

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
             L +S      +  V+TYN LIR L   G+ +E      V LL  ++   G+ P+  TY
Sbjct: 403 LFLLRSKE---FVATVITYNTLIRHLSISGEGNE------VCLLLYQMIEGGIAPNDITY 453

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           +++I+C C+  +       F + L   F P A  F S+I+ L +     Q+
Sbjct: 454 SLVIDCLCREEKFLVALCCFYQSLEDDFFPSA--FLSIIRGLIVGGMLGQL 502



 Score = 41.6 bits (96), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           ++L  +     V ++N L   L+ +   + V  L  ++   G+ P+  TY+++I+C C+ 
Sbjct: 404 FLLRSKEFVATVITYNTLIRHLSISGEGNEVCLLLYQMIEGGIAPNDITYSLVIDCLCRE 463

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
            +         + L   F P A  F S+I+ L     + +   L   +   G  ++V+ Y
Sbjct: 464 EKFLVALCCFYQSLEDDFFPSA--FLSIIRGLIVGGMLGQLHTLIGCVLGQGFIIEVYIY 521

Query: 199 NTLINGLCRTGH 210
             LI  LC+ G+
Sbjct: 522 QELIKALCKNGY 533


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 148/325 (45%), Gaps = 39/325 (12%)

Query: 88  PPVTSFNILFGCL--------AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           P + +FNI    L        A +K  +    L K +N  GL PD +TYN +I  + K+G
Sbjct: 249 PNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVN-KGLEPDDFTYNTIIYGYSKVG 307

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++     +L       F PD  T+ SLI  +C +  I  A ALF +    G +  +  YN
Sbjct: 308 KIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYN 367

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TLI GL + G  + AL L  +M+           PD  TY+ +I+GLCK           
Sbjct: 368 TLIKGLSQQGLVLKALQLMNDMSKEG------MSPDIWTYNLVINGLCK---------MG 412

Query: 260 CMASFSALNKMAF---YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
           C++  + L   A    Y P +        F  LIDG CK  K+  A  +  S+   G+ P
Sbjct: 413 CVSDANNLLNAAIAKGYLPDI------FTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTP 466

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           +V+TYN ++ GLC   +       E V   FK +   G  P++ TYNILI   CK  +V+
Sbjct: 467 DVITYNSILNGLCKAAKP------EDVMETFKMIMEKGCLPNIITYNILIESLCKARKVT 520

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
               +   I      PD V+F ++I
Sbjct: 521 EALDLLEEIRNRGLIPDPVSFGTVI 545



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 155/348 (44%), Gaps = 39/348 (11%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +GDI     + AL +F+  L  +  +P +  +N L   L++       L L   ++  G+
Sbjct: 341 DGDI-----DHALALFEEALG-KGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGM 394

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD +TYN++IN  CKMG VS    +L   +   + PD  TF +LI   C   ++  A  
Sbjct: 395 SPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIG 454

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE-MANGNGEFGVVCEPDAITYS 240
           +   +   G   DV TYN+++NGLC+       +  F+  M  G       C P+ ITY+
Sbjct: 455 ILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKG-------CLPNIITYN 507

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC---LNFLCLIDGLCKIS 297
            +I+ LCK       L                    +R + L    ++F  +I G C   
Sbjct: 508 ILIESLCKARKVTEALDL---------------LEEIRNRGLIPDPVSFGTVISGFCNNG 552

Query: 298 KLKIARELFQSLPRA-GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            L  A +LF+ + +   +   V TYNI+I        MD  +       LF  +   G  
Sbjct: 553 DLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQK------LFHEMGDKGCD 606

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           PD YTY ++I+ FCK+G V+SG+    + +   F P   TF  +I  L
Sbjct: 607 PDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCL 654



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 150/373 (40%), Gaps = 67/373 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ VF+ M +     P + S+N +   L +  +++    ++ R+   G+ PD  T+ I
Sbjct: 93  QEAVDVFERM-DFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTI 151

Query: 131 LINCFCKMGR-------------------------VSHGFV----------VLGRILRSC 155
            I  FC+  R                         V  GF           +  ++LR  
Sbjct: 152 RIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLG 211

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG------ 209
             P   TF  L+  LC +  + E   L  K+   G   ++FT+N  I GLCR G      
Sbjct: 212 IFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGAN 271

Query: 210 -HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
              + A N   +M N         EPD  TY+TII G  K     +       A F    
Sbjct: 272 SKVVEAENYLHKMVNKG------LEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFV 325

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
              F             +  LI G+C+   +  A  LF+     GL P++V YN LI+GL
Sbjct: 326 PDEF------------TYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGL 373

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
              G + +         L   ++  G+ PD++TYN++IN  CK+G VS    +    +  
Sbjct: 374 SQQGLVLKA------LQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAK 427

Query: 389 CFTPDAVTFTSLI 401
            + PD  TF +LI
Sbjct: 428 GYLPDIFTFNTLI 440



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 136/309 (44%), Gaps = 23/309 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N++   L K        +L       G  PD +T+N LI+ +CK  ++ +   +
Sbjct: 396 PDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGI 455

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +     TPD +T+ S++  LC  ++  +    F  +   GC  ++ TYN LI  LC+
Sbjct: 456 LDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCK 515

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 AL+L EE+ N     G++  PD +++ T+I G C               ++   
Sbjct: 516 ARKVTEALDLLEEIRNR----GLI--PDPVSFGTVISGFCNNG--------DLDEAYQLF 561

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +M   +   R+      +  +I+   +   + +A++LF  +   G  P+  TY ++I G
Sbjct: 562 RRMEQQY---RICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDG 618

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  G ++    +     L K +   G  P L T+  +INC C   RV     I   ++ 
Sbjct: 619 FCKVGNVNSGYDF-----LLKEI-EIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVR 672

Query: 388 SCFTPDAVT 396
           +   P+AV 
Sbjct: 673 TGVVPEAVV 681



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 121/305 (39%), Gaps = 37/305 (12%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           + +F+R++     P  ++YN ++N   + G  +    V  R+      PD  TFT  IK 
Sbjct: 96  VDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKS 155

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
            C   R + A  L   +   GCEL+   Y T+I+G     + + A  LF +M       G
Sbjct: 156 FCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKML----RLG 211

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---F 286
           +   P   T++ ++  LCK+                 LNK       V    +C N   F
Sbjct: 212 IF--PHIATFNKLMHILCKKG--------HLQEGEKLLNK-------VLKNGVCPNLFTF 254

Query: 287 LCLIDGLCKI-------SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
              I GLC+        SK+  A      +   GL P+  TYN +I G    G++ +   
Sbjct: 255 NIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASR 314

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
                 + K     G  PD +TY  LI   C+ G +     +F   L     P  V + +
Sbjct: 315 ------ILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNT 368

Query: 400 LIKIL 404
           LIK L
Sbjct: 369 LIKGL 373



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 27/251 (10%)

Query: 156 FTPDAVTFTSLIKDLC--AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
           F    +T+  +I+ L    E   ME   +  +L V    L+   Y + +    R G    
Sbjct: 36  FKHTFLTYKRMIEKLGFHGEFDAMERVLMEMRLNVDNSLLE-GVYVSAMRNYGRKGKVQE 94

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
           A+++FE M   N      CEP   +Y+ I++ L +               F+  +K+   
Sbjct: 95  AVDVFERMDFYN------CEPSIFSYNAIMNILVE------------YGYFNQAHKVYLR 136

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
                +      F   I   C+  +   A  L  ++P  G   N V Y  +I G   +  
Sbjct: 137 MKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENY 196

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
             E   YE    LF ++   G+FP + T+N L++  CK G +  G  +  ++L +   P+
Sbjct: 197 QVEA--YE----LFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPN 250

Query: 394 AVTFTSLIKIL 404
             TF   I+ L
Sbjct: 251 LFTFNIFIQGL 261


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 145/324 (44%), Gaps = 28/324 (8%)

Query: 81  LNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           L MR  R  P   S N L   L+K    D     FK +   G+    +TYNI+I+  CK 
Sbjct: 10  LKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKE 69

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G +     +  ++  + FTPD VT+ SLI        + E   +F +++   C+ DV TY
Sbjct: 70  GDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITY 129

Query: 199 NTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
           N LIN  C+      A     EM ANG        +P+ +TYST ID  CKE      + 
Sbjct: 130 NALINCFCKFERMPKAFEFLHEMKANG-------LKPNVVTYSTFIDAFCKEGMLQEAIK 182

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
           F       AL    F             +  LID  CK   L  A +L + + +AG+  N
Sbjct: 183 FFVDMRRVALTPNEF------------TYTSLIDANCKAGNLAEALKLVEEILQAGIKLN 230

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           VVTY  L+ GLC +G+M E +       +F+ + + G+ P+  TY  L++ F K   +  
Sbjct: 231 VVTYTALLDGLCEEGRMKEAEE------VFRAMLNAGVAPNQETYTALVHGFIKAKEMEY 284

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
              I   +   C  PD + + +++
Sbjct: 285 AKDILKEMKEKCIKPDLLLYGTIL 308



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 143/315 (45%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +  V ++NI+   L K    +   SLF ++   G  PD  TYN LI+   K+G +     
Sbjct: 53  KRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECIC 112

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++  +   PD +T+ +LI   C   R+ +A     +++  G + +V TY+T I+  C
Sbjct: 113 IFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFC 172

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A+  F +M        V   P+  TY+++ID  CK    A  L          
Sbjct: 173 KEGMLQEAIKFFVDMRR------VALTPNEFTYTSLIDANCKAGNLAEAL---------- 216

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             K+        ++   + +  L+DGLC+  ++K A E+F+++  AG+ PN  TY  L+ 
Sbjct: 217 --KLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVH 274

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G     +M+  K       + K +    + PDL  Y  ++   C   R+    ++ G I 
Sbjct: 275 GFIKAKEMEYAKD------ILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIK 328

Query: 387 PSCFTPDAVTFTSLI 401
            S    +AV +T+L+
Sbjct: 329 ESGINTNAVIYTTLM 343



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 148/339 (43%), Gaps = 51/339 (15%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L     K    D  + +F+++      PD  TYN LINCFCK  R+   F  
Sbjct: 89  PDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEF 148

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +  +   P+ VT+++ I   C E  + EA   F  +R      + FTY +LI+  C+
Sbjct: 149 LHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCK 208

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFS 265
            G+   AL L EE+     +  VV      TY+ ++DGLC+E     A  +  + + +  
Sbjct: 209 AGNLAEALKLVEEILQAGIKLNVV------TYTALLDGLCEEGRMKEAEEVFRAMLNAGV 262

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           A N+                +  L+ G  K  +++ A+++ + +    + P+++ Y  ++
Sbjct: 263 APNQE--------------TYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 308

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV----- 380
            GLCN+ +++E K      LL   +  +G+  +   Y  L++ + K G+ +         
Sbjct: 309 WGLCNESRLEEAK------LLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEM 362

Query: 381 ------------------IFGRILPSCFTPDAVTFTSLI 401
                             +F  +L     PD + +T+LI
Sbjct: 363 LDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALI 401



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 148/340 (43%), Gaps = 25/340 (7%)

Query: 76  VFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
            F+++  M+ +  +P V +++       K       +  F  +    L P+ +TY  LI+
Sbjct: 145 AFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLID 204

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK G ++    ++  IL++    + VT+T+L+  LC E R+ EA  +F  +   G   
Sbjct: 205 ANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAP 264

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--- 250
           +  TY  L++G  +      A ++ +EM           +PD + Y TI+ GLC E+   
Sbjct: 265 NQETYTALVHGFIKAKEMEYAKDILKEMKEK------CIKPDLLLYGTILWGLCNESRLE 318

Query: 251 ------GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL--NFLCLIDGLCKISKLKIA 302
                 G     G +  A        A++      + L L    L L+DGLCK +  ++A
Sbjct: 319 EAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVA 378

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
           ++LF  +   G+MP+ + Y  LI G    G + E  +      L  R+   G+  DL+ Y
Sbjct: 379 KKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALN------LRDRMIEIGMELDLHAY 432

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             LI      G+V     +   ++     PD V +  LIK
Sbjct: 433 TALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIK 472


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 168/378 (44%), Gaps = 71/378 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +         +     L + +    + PD  T++ LIN F K G+VS    +
Sbjct: 113 PNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEEL 172

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +LR    P  +T++S+I   C  SR+ +A  +F  +   GC  D+ T NTLI+G CR
Sbjct: 173 YREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCR 232

Query: 208 T-----------GHTIVALNLFEEM-ANG-----------------NGEFGVVCEP---- 234
                       G+  VA +LF+EM +NG                 NG+     E     
Sbjct: 233 AKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVF 292

Query: 235 -------DAITYSTIIDGLCK--EAGSANFLGFSCMASFSALNKMAFYFPLV-------- 277
                  D  T + II+G+CK  +   A  L F+ +        +  Y  L+        
Sbjct: 293 QKSKMDLDTATCNIIINGMCKGNKVDEAWDL-FNSLPVNGVETDVVTYNILIGVFVKEGN 351

Query: 278 --RVQCLCLNFLC------------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
             R + + L  LC            ++DG CK ++L+ AR++  S+   G  P+VVT++ 
Sbjct: 352 FLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFST 411

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI+G C  G++D+         LF  +   GL  D  TYN LI+ FCK+G ++    IF 
Sbjct: 412 LIKGYCKAGRVDDG------LELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFE 465

Query: 384 RILPSCFTPDAVTFTSLI 401
            ++ S   PD +TF S++
Sbjct: 466 EMVSSGVCPDTITFRSML 483



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 142/317 (44%), Gaps = 48/317 (15%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +  V  ++ +   L K  ++    ++F  ++  G+FP+  TYN +I+ +C  G+ S    
Sbjct: 77  KANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQ 136

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++     PD VTF++LI     E ++  A  L+ ++          TY+++I+G C
Sbjct: 137 LLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFC 196

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      A ++F+ M +        C PD IT +T+IDG C+                  
Sbjct: 197 KHSRLEDAKHMFDLMVSKG------CSPDIITLNTLIDGCCRAKRH-------------- 236

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                                 LI G C++  + +A++LFQ +   G+ P++VT N L+ 
Sbjct: 237 ----------------------LIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLA 274

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC +G++      E    +FK    + +  D  T NI+IN  CK  +V   + +F  + 
Sbjct: 275 GLCENGKL------EKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLP 328

Query: 387 PSCFTPDAVTFTSLIKI 403
            +    D VT+  LI +
Sbjct: 329 VNGVETDVVTYNILIGV 345



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 24/244 (9%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
            + VTFT+L+  LC E R+++A AL  ++   G + D  TY T++NG+C+ G T+ ALN+
Sbjct: 8   ANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNM 67

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
             +M           + + + YS I+D LCK+              F+ +++    FP V
Sbjct: 68  LRKMDESQ------IKANVVIYSAIVDRLCKDGNH-----IKAQNIFTEMHEKGI-FPNV 115

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                 L + C+IDG C   K   A +L + +    + P+VVT++ LI     +G++   
Sbjct: 116 ------LTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGA 169

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           +       L++ +    +FP   TY+ +I+ FCK  R+     +F  ++    +PD +T 
Sbjct: 170 EE------LYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITL 223

Query: 398 TSLI 401
            +LI
Sbjct: 224 NTLI 227



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 35/294 (11%)

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
           TG   +  T+  L+N  C+ GRV     ++ R++     PDAVT+ +++  +C     + 
Sbjct: 4   TGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVS 63

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A  +  K+     + +V  Y+ +++ LC+ G+ I A N+F EM     E G+   P+ +T
Sbjct: 64  ALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMH----EKGIF--PNVLT 117

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+ +IDG C                +S   ++        +    + F  LI+   K  K
Sbjct: 118 YNCMIDGYCS------------YGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGK 165

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           +  A EL++ + R  + P  +TY+ +I G C   ++++ KH      +F  + S G  PD
Sbjct: 166 VSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKH------MFDLMVSKGCSPD 219

Query: 359 LYTYNILIN-----------CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + T N LI+            FC++G V+    +F  ++ +  +PD VT  +L+
Sbjct: 220 IITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLL 273



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 141/328 (42%), Gaps = 36/328 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILF-GCLAKTKH----------YDTVLSLFKRLNLTG 120
           +A  +FD M++ +   P + + N L  GC    +H           +    LF+ +   G
Sbjct: 203 DAKHMFDLMVS-KGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNG 261

Query: 121 LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180
           + PD  T N L+   C+ G++     +     +S    D  T   +I  +C  +++ EA 
Sbjct: 262 VSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAW 321

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
            LF  L V G E DV TYN LI    + G+ + A +++ EM       G++  P  +TY+
Sbjct: 322 DLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCK----GII--PSTVTYN 375

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           +++DG CK+                   +M             + F  LI G CK  ++ 
Sbjct: 376 SMVDGFCKQN------------RLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVD 423

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
              ELF  + + GL+ + +TYN LI G C  G ++  +       +F+ + S+G+ PD  
Sbjct: 424 DGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQD------IFEEMVSSGVCPDTI 477

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPS 388
           T+  ++   C    +  G  +   +  S
Sbjct: 478 TFRSMLAGLCTKAELQKGLTMLEDLQKS 505



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 89/183 (48%), Gaps = 27/183 (14%)

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV--QCLCLNFLCL 289
           C  + +T++T+++GLC+E                 L  +A    +V    Q   + +  +
Sbjct: 6   CPANVVTFTTLMNGLCREG--------------RVLQALALVDRMVEEGHQPDAVTYGTI 51

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           ++G+CK+     A  + + +  + +  NVV Y+ ++  LC DG   + ++      +F  
Sbjct: 52  VNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQN------IFTE 105

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409
           ++  G+FP++ TYN +I+ +C  G+ S    +   ++     PD VTF++L     IN+F
Sbjct: 106 MHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSAL-----INAF 160

Query: 410 FRQ 412
            ++
Sbjct: 161 VKE 163


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 163/346 (47%), Gaps = 42/346 (12%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
            MR S        IL G L + + +D+V   ++ +   GL PD + Y++L  C  K G  
Sbjct: 191 EMRCSPDSKACLAILNG-LVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFP 249

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
           S    +L  +      P+   +T  I+DLC E+++ EA  +F  +++ G   +++TY+ +
Sbjct: 250 SKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAM 309

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCE--PDAITYSTIIDGLCK--EAGSANFLG 257
           I+G C+TG+   A  L++E+        +V E  P+ + + T++DG CK  E  +A  L 
Sbjct: 310 IDGYCKTGNLRQAYGLYKEI--------LVAELLPNVVVFGTLVDGFCKARELVAARSL- 360

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFL----------------------CLIDGLCK 295
           F  M  F     +  Y  L+  QC   N L                       LI+GLC 
Sbjct: 361 FVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCT 420

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
             +L  A  LFQ +    + P+ VTYN LI G C +  +      E    L   + S+G+
Sbjct: 421 EERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNI------EKALDLCSEMTSSGV 474

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            P++ T++ LI+ +CK+  + +   ++  +      PD VT+T+LI
Sbjct: 475 EPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLI 520



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 149/315 (47%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  + I    L +    +    +F+ + + G+ P+ YTY+ +I+ +CK G +   + 
Sbjct: 265 KPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYG 324

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   IL +   P+ V F +L+   C    ++ A +LF  +  FG + +++ YN LI+G C
Sbjct: 325 LYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQC 384

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           ++G+ + A+ L  EM + N        PD  TY+ +I+GLC E               + 
Sbjct: 385 KSGNMLEAMGLLSEMESLN------LSPDVFTYTILINGLCTE------------ERLAE 426

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            N++       R+    + +  LI G CK   ++ A +L   +  +G+ PN++T++ LI 
Sbjct: 427 ANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLID 486

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C      + ++ +    L+  +   G+ PD+ TY  LI+   K   +     ++  +L
Sbjct: 487 GYC------KVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDML 540

Query: 387 PSCFTPDAVTFTSLI 401
            +   P+  TF  L+
Sbjct: 541 EAGIHPNDHTFACLV 555



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 142/308 (46%), Gaps = 19/308 (6%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ +   M ++  S P V ++ IL   L   +       LF+R+    +FP   TYN L
Sbjct: 391 EAMGLLSEMESLNLS-PDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSL 449

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ FCK   +     +   +  S   P+ +TF++LI   C    I  A  L+ ++ + G 
Sbjct: 450 IHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGI 509

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV TY TLI+   +  +   AL L+ +M     E G+   P+  T++ ++DG  KE  
Sbjct: 510 VPDVVTYTTLIDAHFKEANMKEALRLYSDML----EAGI--HPNDHTFACLVDGFWKEGR 563

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCL-CLNFLCLIDGLCKISKLKIARELFQSLP 310
            ++ + F    + +A  K      +V+  C   + F CLI+GLC+   +  A   F  + 
Sbjct: 564 LSDAIDFYLENNQAATGK-----SIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMK 618

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P++ +Y  +++    + ++ +T       +L   +  TG+ P+L    +L   + 
Sbjct: 619 SGGVTPDIWSYVSMLKAHLREKRITDT------MMLHCDMIKTGILPNLMVNQLLAMFYQ 672

Query: 371 KIGRVSSG 378
           + G + S 
Sbjct: 673 ENGYLRSA 680


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 149/310 (48%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 128 FNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 187

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES+I +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVD 247

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             +   +++M+ 
Sbjct: 248 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKG--------DLKQAHHLIDEMS- 292

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L  A E  + + +     + V Y  LI GLC +G
Sbjct: 293 ---MKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREG 349

Query: 333 -QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
             +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 350 XSVDAEK-------MLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 402

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 403 PSVVTYNVLM 412



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 133/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 144 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 202

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P++VTFT+LI   C   R+  A  ++ ++      
Sbjct: 203 NGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 262

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CK+   
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKG------LKPDKITYTTLIDGCCKDG-- 314

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M         +   + +  LI GLC+      A ++ + +   
Sbjct: 315 ------DLDTAFEHRKRMI----QENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSV 364

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 365 GLKPDARTYTMIINEFCKKGDVWKGSK------LLKEMQRDGHVPSVVTYNVLMN 413



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 192 QPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAME 251

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L    +PD +T+ +LI  LC +  + +A  L  ++ + G + D  TY TLI+G C
Sbjct: 252 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCC 311

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 312 KDGDLDTAFEHRKRMIQENTRL------DDVVYTALISGLCREGXSVD------------ 353

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G +P+VVTYN+L+ 
Sbjct: 354 AEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 413

Query: 327 G 327
           G
Sbjct: 414 G 414



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 96  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQS------VFD 149

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI------- 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI       
Sbjct: 150 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 209

Query: 402 KILEINSFFRQV 413
           KI + N  F ++
Sbjct: 210 KIDDANELFDEM 221



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 54/124 (43%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++M+  +P   ++  L     K    DT     KR+       D   Y  LI+  C+ G 
Sbjct: 291 MSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGX 350

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +L  +L     PDA T+T +I + C +  + + + L  +++  G    V TYN 
Sbjct: 351 SVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNV 410

Query: 201 LING 204
           L+NG
Sbjct: 411 LMNG 414


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 147/317 (46%), Gaps = 30/317 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +++++   L +    D  L L + +   GL PD Y Y  LI+ FC+  R + G  +
Sbjct: 265 PNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSM 324

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      PD V +T+LI     +S I  A  +  ++     +L+ FTY  LI+GLC+
Sbjct: 325 LDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCK 384

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A +LF EM       G+  +PD  TY+ +I+G  K                  +
Sbjct: 385 IGDLEKAEDLFSEMT----MMGI--KPDIQTYNCLIEGYYK---------------VQNM 423

Query: 268 NKMAFYFPLVRVQCLCLN-FLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            K       ++ + L  N ++C  +++GLC    L  A ELFQ +   GL PN+V Y  +
Sbjct: 424 EKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTI 483

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           ++GL  +G+      +E    +   +   GL PD++ YN +I  FCK G++  G      
Sbjct: 484 VKGLVKEGR------FEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVE 537

Query: 385 ILPSCFTPDAVTFTSLI 401
           ++     P+  T+ + I
Sbjct: 538 MIAKGLKPNVYTYGAFI 554



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 141/320 (44%), Gaps = 37/320 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V + ++L   L+K       + +F  L   GL PD +TY  LI+  CK G +   F +
Sbjct: 615 PDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFEL 674

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + +    P+ VT+ +LI  LC    I +A  LF  +   G   +  TY+T+I G C+
Sbjct: 675 HDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCK 734

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN----FLGF--SCM 261
           + +   A  LF  M        V   PD+  Y  +IDG CK   +      FLG     +
Sbjct: 735 SANLTEAFQLFHGMKL------VGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI 788

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
           AS  A N                    LIDG  K+ KL  A +L + +    + PN VTY
Sbjct: 789 ASTPAFN-------------------ALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTY 829

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
            ILI   C  G + E +       LF  +    + P++ TY  L++ + +IGR S  F +
Sbjct: 830 TILIEYHCTVGNIKEAEQ------LFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSL 883

Query: 382 FGRILPSCFTPDAVTFTSLI 401
           F  ++     PD + ++ ++
Sbjct: 884 FDEMVARGIKPDDLAWSVMV 903



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 134/298 (44%), Gaps = 28/298 (9%)

Query: 118 LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177
           L  + PD YTY  LIN +C++G+V  G  VL  +      P+ VT++ +I  LC    + 
Sbjct: 225 LGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVD 284

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           EA  L   +   G   D + Y TLI+G CR   +    ++ +EM      + +  +PD +
Sbjct: 285 EALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEM------YTMGLKPDHV 338

Query: 238 TYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
            Y+ +I+G  K++  G A  +     A    LN   +Y               LI GLCK
Sbjct: 339 AYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYY--------------ALIHGLCK 384

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
           I  L+ A +LF  +   G+ P++ TYN LI G        + ++ E  + L   +    L
Sbjct: 385 IGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYY------KVQNMEKAYELLIEIKKENL 438

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
             + Y    ++N  C  G ++    +F  ++     P+ V +T+++K L     F + 
Sbjct: 439 TANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEA 496



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 146/351 (41%), Gaps = 49/351 (13%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           + M   +P + ++N L     K ++ +    L   +    L  + Y    ++N  C  G 
Sbjct: 398 MTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGD 457

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           ++    +   ++     P+ V +T+++K L  E R  EA  +   ++  G   DVF YNT
Sbjct: 458 LTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNT 517

Query: 201 LINGLCRTGHTIVALNLFEEM-ANG-----------------NGEFGVV----------- 231
           +I G C+ G      +   EM A G                  GE               
Sbjct: 518 VIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSG 577

Query: 232 CEPDAITYSTIIDGLCKEAGSAN-FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
             P+ +  + +IDG CK+  +   F  F CM     L       P V+   +      LI
Sbjct: 578 IAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVL-------PDVQTHSV------LI 624

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
            GL K  KL+ A  +F  L   GL+P+V TY  LI  LC +G +      +  F L   +
Sbjct: 625 HGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDL------KAAFELHDDM 678

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              G+ P++ TYN LIN  CK+G ++    +F  I       ++VT++++I
Sbjct: 679 CKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTII 729



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 154/365 (42%), Gaps = 59/365 (16%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ +   M +   S P V  +N +     K    +   S    +   GL P+ YTY   
Sbjct: 495 EAIKILGVMKDQGLS-PDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAF 553

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ +C+ G +         +L S   P+ V  T LI   C +    +A A F  +   G 
Sbjct: 554 IHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGV 613

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV T++ LI+GL + G    A+ +F E+ +     G+V  PD  TY+++I  LCKE  
Sbjct: 614 LPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDK----GLV--PDVFTYTSLISNLCKEG- 666

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                     A+F   + M        +    + +  LI+GLCK+ ++  ARELF  +P 
Sbjct: 667 -------DLKAAFELHDDMCKK----GINPNIVTYNALINGLCKLGEIAKARELFDGIPE 715

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY--------- 362
            GL  N VTY+ +I G C    + E       F LF  +   G+ PD + Y         
Sbjct: 716 KGLARNSVTYSTIIAGYCKSANLTEA------FQLFHGMKLVGVPPDSFVYCALIDGCCK 769

Query: 363 -------------------------NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                                    N LI+ F K+G++   + +   ++ +  TP+ VT+
Sbjct: 770 AGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTY 829

Query: 398 TSLIK 402
           T LI+
Sbjct: 830 TILIE 834



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 119/267 (44%), Gaps = 27/267 (10%)

Query: 76  VFDYMLNMRPSRPPVTSF---NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
            F     M+    P  SF    ++ GC  K  + +  LSLF  +   G+      +N LI
Sbjct: 741 AFQLFHGMKLVGVPPDSFVYCALIDGC-CKAGNTEKALSLFLGMVEEGI-ASTPAFNALI 798

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + F K+G++   + ++  ++ +  TP+ VT+T LI+  C    I EA  LF +++     
Sbjct: 799 DGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVM 858

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            +V TY +L++G  R G      +LF+EM A G        +PD + +S ++D   KE  
Sbjct: 859 PNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARG-------IKPDDLAWSVMVDAHLKEG- 910

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN-FLCLIDGLCKISKLKIARELFQSLP 310
                  + + +   ++ M     L     +C N +  LID LCK + L    ++   + 
Sbjct: 911 -------NWIKALKLVDDM-----LSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVE 958

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDET 337
           + G   ++ T   L+      G+ DE 
Sbjct: 959 KQGSKLSLATCGTLVCCFHRAGRTDEA 985



 Score = 44.7 bits (104), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 57/141 (40%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P V ++  L     +      + SLF  +   G+ PD   ++++++   K G 
Sbjct: 852 MQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGN 911

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 ++  +L          +T LI  LC  + + E   +  ++   G +L + T  T
Sbjct: 912 WIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGT 971

Query: 201 LINGLCRTGHTIVALNLFEEM 221
           L+    R G T  AL + E M
Sbjct: 972 LVCCFHRAGRTDEALRVLESM 992


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 151/310 (48%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 145 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             +   +++M+ 
Sbjct: 265 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKG--------DLKQAHHLIDEMS- 309

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 310 ---VKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEG 366

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 367 RSVDAEK-------MLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHV 419

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 420 PSVVTYNVLM 429



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 135/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 161 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 219

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 220 NGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 279

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG------LKPDKITYTTLIDGCCKEG-- 331

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                    ++F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 332 ------DLDSAFEHRKRMI----QENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSV 381

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 382 GLKPDARTYTMIINEFCKKGDVWKGXK------LLKEMQRDGHVPSVVTYNVLMN 430



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+   S P + ++N L   L K         L   +++ GL PD+ TY  LI
Sbjct: 266 AMEIYKQMLSQSLS-PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 324

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E R ++A  +  ++   G +
Sbjct: 325 DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 193 LD-----------------------------------VFTYNTLING 204
            D                                   V TYN L+NG
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQS------VFD 166

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 219


>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
 gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 166/362 (45%), Gaps = 32/362 (8%)

Query: 67  SITPNEALCVFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           S+  +   CV     +M  +R  P   +FN+L   L +  + +    +F +++  G  P+
Sbjct: 128 SLKESRVDCVIWLYKDMAVARVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPN 187

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            ++  IL+  +C+ G  SHG  +L  +  S   P+ V + ++I  LC E + +EA  L  
Sbjct: 188 EFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVE 247

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           K+R  G   D+ T+N  I  LC++G  + A  +F +M   + E G+  +P+ +TY+ +++
Sbjct: 248 KMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDM-QIDEEMGLP-KPNTVTYNLMLE 305

Query: 245 GLCKEA----GSANFLGFSCMASFSALNKMAFYFPLVRV-----QCLCLNFLC------- 288
           G C E       A F       + S  +   +   LVR        L LN +        
Sbjct: 306 GFCSEGMFEEARAIFDSMKNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPN 365

Query: 289 ------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
                 L+ GLCK      AR +   +  +G+ P+ VTY+ L+ G C  G++ E  +   
Sbjct: 366 LYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANY--- 422

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
              + + +   G FP++YT NIL++   K GR S    +   +    +  D VT  ++I 
Sbjct: 423 ---VLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMIN 479

Query: 403 IL 404
            L
Sbjct: 480 GL 481



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 37/333 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + S+NIL   L K   +    S+   +  +G+ PD  TY+ L++ +C+ G++     
Sbjct: 363 KPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANY 422

Query: 147 VLGRILR-SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           VL  +++  CF P+  T   L+  L  E R  EA  L   +   G  LD  T NT+INGL
Sbjct: 423 VLREMIQVGCF-PNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGL 481

Query: 206 CRTGHTIVALNLFEEM-ANGNGEFGVV----------------CEPDAITYSTIIDGLCK 248
           C+ G+   A+ +   M   G+   G +                C PD+ITY+TII GLCK
Sbjct: 482 CKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCK 541

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                       +       K        ++    L F   I   CK  KL  A  + + 
Sbjct: 542 ------------VGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKE 589

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + + G   ++ TYN LI+GL ++ Q+ E      ++ L   +   G+FP++YTYN +I+C
Sbjct: 590 MEKKGCNKSLRTYNSLIQGLGSENQIFE------IYGLMDEMKERGIFPNVYTYNNIISC 643

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             + G++     +   +L    +P+  TF  LI
Sbjct: 644 LSEGGKLKDATCLLDEMLQKGISPNIYTFRILI 676



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 158/400 (39%), Gaps = 89/400 (22%)

Query: 78  DYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           D +  MR S   P   ++N +   L           L +++   GL PD  T+N  I   
Sbjct: 209 DLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAAL 268

Query: 136 CKMGRVSHGFVVLGRILRSCF--------TPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           CK G++    +   RI R            P+ VT+  +++  C+E    EA A+F  ++
Sbjct: 269 CKSGQI----LEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMK 324

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN------------------GEF- 228
                L + +YN  + GL R+G  + A  +  EMA  N                  G F 
Sbjct: 325 NSET-LSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFS 383

Query: 229 ------GVVCE----PDAITYSTIIDGLCKEAG--SANFLGFSCMASFSALNKMAFYFPL 276
                 G++ E    PD +TYST++ G C+      AN++          L +M      
Sbjct: 384 DARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYV----------LREM------ 427

Query: 277 VRVQCLCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
           ++V C    + C  L+  L K  +   A +L Q +   G   + VT N +I GLC  G +
Sbjct: 428 IQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNL 487

Query: 335 DETKHYETVFLLFKRL-------------------NSTGLFPDLYTYNILINCFCKIGRV 375
           D  K  E V  ++ R                    N     PD  TY  +I   CK+GRV
Sbjct: 488 D--KAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRV 545

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI----KILEINSFFR 411
                    ++    +PD++ F + I    K  +++S FR
Sbjct: 546 DEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFR 585



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 121/303 (39%), Gaps = 34/303 (11%)

Query: 107 DTVLSLFK-RLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           ++ + LF  R N     PD  TY  +I   CK+GRV      L  ++    +PD++ F +
Sbjct: 510 NSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDT 569

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
            I + C + ++  A  +  ++   GC   + TYN+LI GL           L +EM    
Sbjct: 570 FIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMK--- 626

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN 285
            E G+   P+  TY+ II               SC++    L         +  + +  N
Sbjct: 627 -ERGIF--PNVYTYNNII---------------SCLSEGGKLKDATCLLDEMLQKGISPN 668

Query: 286 ---FLCLIDGLCKISKLKIARELFQ-SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
              F  LI    K      A+ELF+ +L   G   ++  Y+ +   L   G+  + K   
Sbjct: 669 IYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESL--YSFMFNELLAGGETLKAKE-- 724

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               LF+      L    + Y  LI   CK G++     I  +++   ++ D  +F  +I
Sbjct: 725 ----LFEAALDRSLALKNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDPASFMPVI 780

Query: 402 KIL 404
             L
Sbjct: 781 DEL 783



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 122/284 (42%), Gaps = 30/284 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N  + +FD   N +   P   ++  + G L K    D        +    L PD   ++ 
Sbjct: 510 NSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDT 569

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I  +CK G++S  F VL  + +        T+ SLI+ L +E++I E   L  +++  G
Sbjct: 570 FIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERG 629

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
              +V+TYN +I+ L   G    A  L +EM     + G+   P+  T+  +I    K  
Sbjct: 630 IFPNVYTYNNIISCLSEGGKLKDATCLLDEML----QKGI--SPNIYTFRILIGAFFKAC 683

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ- 307
           + G+A  L F    S     +  + F              + + L    +   A+ELF+ 
Sbjct: 684 DFGAAQEL-FEIALSLCGHKESLYSF--------------MFNELLAGGETLKAKELFEA 728

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           +L R+  + N + Y  LI  LC DG++D+       F+L K ++
Sbjct: 729 ALDRSLALKNFL-YRDLIEKLCKDGKLDDAS-----FILHKMMD 766


>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 158/340 (46%), Gaps = 30/340 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   +FN+L   L +  + +    +F +++  G  P+ ++  IL+  +C+ G  SHG  
Sbjct: 150 KPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGID 209

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +  S   P+ V + ++I  LC E + +EA  L  K+R  G   D+ T+N  I  LC
Sbjct: 210 LLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALC 269

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA----GSANFLGFSCMA 262
           ++G  + A  +F +M   + E G+  +P+ +TY+ +++G C E       A F       
Sbjct: 270 KSGQILEASRIFRDM-QIDEEMGLP-KPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSE 327

Query: 263 SFSALNKMAFYFPLVRV-----QCLCLNFLC-------------LIDGLCKISKLKIARE 304
           + S  +   +   LVR        L LN +              L+ GLCK      AR 
Sbjct: 328 TLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARS 387

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +   +  +G+ P+ VTY+ L+ G C  G++ E  +      + + +   G FP++YT NI
Sbjct: 388 ILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANY------VLREMIQVGCFPNMYTCNI 441

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           L++   K GR S    +   +    +  D VT  ++I  L
Sbjct: 442 LLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGL 481



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 37/333 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + S+NIL   L K   +    S+   +  +G+ PD  TY+ L++ +C+ G++     
Sbjct: 363 KPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANY 422

Query: 147 VLGRILR-SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           VL  +++  CF P+  T   L+  L  E R  EA  L   +   G  LD  T NT+INGL
Sbjct: 423 VLREMIQVGCF-PNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGL 481

Query: 206 CRTGHTIVALNLFEEM-ANGNGEFGVV----------------CEPDAITYSTIIDGLCK 248
           C+ G+   A+ +   M   G+   G +                C PD+ITY+TII GLCK
Sbjct: 482 CKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCK 541

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                       +       K        ++    L F   I   CK  KL  A  + + 
Sbjct: 542 ------------VGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKE 589

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + + G   ++ TYN LI+GL ++ Q+ E      ++ L   +   G+FP++YTYN +I+C
Sbjct: 590 MEKKGCNKSLRTYNSLIQGLGSENQIFE------IYGLMDEMKERGIFPNVYTYNNIISC 643

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             + G++     +   +L    +P+  TF  LI
Sbjct: 644 LSEGGKLKDATCLLDEMLQKGISPNIYTFRILI 676



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 158/400 (39%), Gaps = 89/400 (22%)

Query: 78  DYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           D +  MR S   P   ++N +   L           L +++   GL PD  T+N  I   
Sbjct: 209 DLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAAL 268

Query: 136 CKMGRVSHGFVVLGRILRSCF--------TPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           CK G++    +   RI R            P+ VT+  +++  C+E    EA A+F  ++
Sbjct: 269 CKSGQI----LEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMK 324

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN------------------GEF- 228
                L + +YN  + GL R+G  + A  +  EMA  N                  G F 
Sbjct: 325 NSET-LSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFS 383

Query: 229 ------GVVCE----PDAITYSTIIDGLCKEAG--SANFLGFSCMASFSALNKMAFYFPL 276
                 G++ E    PD +TYST++ G C+      AN++          L +M      
Sbjct: 384 DARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYV----------LREM------ 427

Query: 277 VRVQCLCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
           ++V C    + C  L+  L K  +   A +L Q +   G   + VT N +I GLC  G +
Sbjct: 428 IQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNL 487

Query: 335 DETKHYETVFLLFKRL-------------------NSTGLFPDLYTYNILINCFCKIGRV 375
           D  K  E V  ++ R                    N     PD  TY  +I   CK+GRV
Sbjct: 488 D--KAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRV 545

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI----KILEINSFFR 411
                    ++    +PD++ F + I    K  +++S FR
Sbjct: 546 DEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFR 585



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 121/303 (39%), Gaps = 34/303 (11%)

Query: 107 DTVLSLFK-RLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           ++ + LF  R N     PD  TY  +I   CK+GRV      L  ++    +PD++ F +
Sbjct: 510 NSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDT 569

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
            I + C + ++  A  +  ++   GC   + TYN+LI GL           L +EM    
Sbjct: 570 FIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMK--- 626

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN 285
            E G+   P+  TY+ II               SC++    L         +  + +  N
Sbjct: 627 -ERGIF--PNVYTYNNII---------------SCLSEGGKLKDATCLLDEMLQKGISPN 668

Query: 286 ---FLCLIDGLCKISKLKIARELFQ-SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
              F  LI    K      A+ELF+ +L   G   ++  Y+ +   L   G+  + K   
Sbjct: 669 IYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESL--YSFMFNELLAGGETLKAKE-- 724

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               LF+      L    + Y  LI   CK G++     I  +++   ++ D  +F  +I
Sbjct: 725 ----LFEAALDRSLALKNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSFDPASFMPVI 780

Query: 402 KIL 404
             L
Sbjct: 781 DEL 783



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 122/284 (42%), Gaps = 30/284 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N  + +FD   N +   P   ++  + G L K    D        +    L PD   ++ 
Sbjct: 510 NSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDT 569

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I  +CK G++S  F VL  + +        T+ SLI+ L +E++I E   L  +++  G
Sbjct: 570 FIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERG 629

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
              +V+TYN +I+ L   G    A  L +EM     + G+   P+  T+  +I    K  
Sbjct: 630 IFPNVYTYNNIISCLSEGGKLKDATCLLDEML----QKGI--SPNIYTFRILIGAFFKAC 683

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ- 307
           + G+A  L F    S     +  + F              + + L    +   A+ELF+ 
Sbjct: 684 DFGAAQEL-FEIALSLCGHKESLYSF--------------MFNELLAGGETLKAKELFEA 728

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           +L R+  + N + Y  LI  LC DG++D+       F+L K ++
Sbjct: 729 ALDRSLALKNFL-YRDLIEKLCKDGKLDDAS-----FILHKMMD 766


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 151/310 (48%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 185

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 245

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             +   +++M+ 
Sbjct: 246 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKG--------DLKQAHHLIDEMS- 290

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 291 ---MKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEG 347

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + + GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 348 RSVDAEK-------MLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 400

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 401 PSVVTYNVLM 410



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 130/281 (46%), Gaps = 24/281 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V S+N L     +    D    L   +  +G+ PD YTY++LIN  CK  ++     
Sbjct: 155 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 214

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L     P+ VTFT+LI   C   R+  A  ++ ++       D+ TYNTLI GLC
Sbjct: 215 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLC 274

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A +L +EM+          +PD ITY+T+IDG CKE            ++F  
Sbjct: 275 KKGDLKQAHHLIDEMSMKE------LKPDKITYTTLIDGCCKEG--------DLDSAFEH 320

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +M        ++   + +  LI GLC+  +   A ++ + +   GL P+  TY ++I 
Sbjct: 321 RKRMI----QENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIIN 376

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
             C  G + +         L K +   G  P + TYN+L+N
Sbjct: 377 EFCKKGDVWKGSK------LLKEMQRDGHVPSVVTYNVLMN 411



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 56/124 (45%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++M+  +P   ++  L     K    D+     KR+    +  D   Y  LI+  C+ GR
Sbjct: 289 MSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGR 348

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +L  +L     PD+ T+T +I + C +  + + + L  +++  G    V TYN 
Sbjct: 349 SVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNV 408

Query: 201 LING 204
           L+NG
Sbjct: 409 LMNG 412



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 94  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 147

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI
Sbjct: 148 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 200


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 165/351 (47%), Gaps = 30/351 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+C+F  M +    +P   ++  L    +   H D V  ++  +   G  PD  T+ I
Sbjct: 316 DDAMCLFTKMKS-SSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTI 374

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  CK GR++  F +L  + +    P+  T+ +LI  L   +R+ +A  LF+ +   G
Sbjct: 375 LVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLG 434

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGN--------------GEFGVVCEPD 235
            E   +TY  LI+   ++GH   AL  FE+M A G                E G + E  
Sbjct: 435 VEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAK 494

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNK-MAFYFPLVRVQC----LCLNFLCLI 290
           A+       GL  ++ + N +   C +    +++ +     + +VQC    + +N   LI
Sbjct: 495 AMFNELKSSGLAPDSVTYNMM-MKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVIN--SLI 551

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           D L K  +++ A ++F  +    L P VVTYNIL+ GL  +GQ+      +    LF+ +
Sbjct: 552 DTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQI------QKAVQLFESM 605

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N  G  P+  T+N L++C CK   V     +F ++      PD +TF ++I
Sbjct: 606 NGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTII 656



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 159/358 (44%), Gaps = 40/358 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL V+  M++    +P + +F+ L     K ++  TV+ L + +   GL P+ YTY I 
Sbjct: 212 EALEVYRRMVS-EGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTIC 270

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I    + G++   + ++ R+      PD VT+T LI  LC   ++ +A  LFTK++    
Sbjct: 271 IRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSH 330

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           + D  TY TL++     GH      ++ EM A+G         PD +T++ +++ LCK A
Sbjct: 331 KPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYA-------PDVVTFTILVNALCK-A 382

Query: 251 GSAN--FLGFSCMASFSALNKMAFYFPLVR----------------------VQCLCLNF 286
           G  N  F     M     L  +  Y  L+                       V+     +
Sbjct: 383 GRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTY 442

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
           + LID   K      A E F+ +   G+ PN+V  N  +  L   G++ E K       +
Sbjct: 443 ILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAK------AM 496

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           F  L S+GL PD  TYN+++ C+ K+G+V     +   +      PD +   SLI  L
Sbjct: 497 FNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTL 554



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 165/365 (45%), Gaps = 36/365 (9%)

Query: 40   RLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGC 99
            R   KD + L   +K  CK       TS+  N    VF         +P +  +N+L   
Sbjct: 748  RAICKDDSVLIPIIKVLCKHKK----TSVARN----VFVKFTKELGVKPTLKVYNLLIDG 799

Query: 100  LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
              +  + +   +LF+ +   G  PD +TYN LI+   K G+++  F +   +L     P+
Sbjct: 800  FLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPN 859

Query: 160  AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
             +T+  +I +L   +R+ +A  L+  L          T+  LI+GL ++G     L+   
Sbjct: 860  TITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGR----LDDAH 915

Query: 220  EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR- 278
            EM +G   +G  C P++  Y+ +++G     G    +  +C           F+  +V+ 
Sbjct: 916  EMFDGMVHYG--CRPNSAIYNILVNGY----GKLGHVDTAC----------EFFKRMVKE 959

Query: 279  -VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
             ++    ++  L+D LC   ++  A   F+ L +AGL P++V YN++I GL        +
Sbjct: 960  GIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGL------GRS 1013

Query: 338  KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
            +  E    LF  + + G+ PDLYTYN LI     +G +     I+  +      P+  T+
Sbjct: 1014 QRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTY 1073

Query: 398  TSLIK 402
             +LI+
Sbjct: 1074 NALIR 1078



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 146/340 (42%), Gaps = 38/340 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V   N L   L K    +    +F R+    L P   TYNIL+    K G++     
Sbjct: 541 EPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQ 600

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +     +P+ +TF +L+  LC    +  A  +F K+    C  DV T+NT+I+G  
Sbjct: 601 LFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFI 660

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-------SANF---L 256
           +      A+ LF +M         +  PD +T  T++ G+ K          + +F   +
Sbjct: 661 KQNQIKNAIWLFHQMKK-------LLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQV 713

Query: 257 GFSCMASF-----------SALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIA 302
           G +   SF           +   K   +   +  + +C +    + +I  LCK  K  +A
Sbjct: 714 GSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCKHKKTSVA 773

Query: 303 RELFQSLPRA-GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           R +F    +  G+ P +  YN+LI G        E  + E  + LF+ + S G  PD +T
Sbjct: 774 RNVFVKFTKELGVKPTLKVYNLLIDGFL------EVHNVEVAWNLFEEMKSAGCAPDTFT 827

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           YN LI+   K G+++  F ++  +L     P+ +T+  +I
Sbjct: 828 YNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVI 867



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 125/268 (46%), Gaps = 20/268 (7%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P +AL  F+ M   R   P + + N     LA+        ++F  L  +GL PD  TYN
Sbjct: 455 PGKALETFEKM-KARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYN 513

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +++ C+ K+G+V     +L  + +    PD +   SLI  L    R+ EA  +F ++   
Sbjct: 514 MMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEM 573

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
                V TYN L+ GL + G    A+ LFE M NG+G     C P+ IT++T++D LCK 
Sbjct: 574 NLAPTVVTYNILLAGLGKEGQIQKAVQLFESM-NGHG-----CSPNTITFNTLLDCLCKN 627

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                 L            KM +    +  +   L F  +I G  K +++K A  LF  +
Sbjct: 628 DEVDLAL------------KMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQM 675

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDET 337
            +  L P+ VT   L+ G+   GQ+++ 
Sbjct: 676 KKL-LRPDHVTLCTLLPGVIKSGQIEDA 702



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 132/297 (44%), Gaps = 28/297 (9%)

Query: 120  GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
            G+ P    YN+LI+ F ++  V   + +   +  +   PD  T+ SLI       +I E 
Sbjct: 785  GVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINEL 844

Query: 180  AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
              L+ ++   GC+ +  TYN +I+ L ++     A++L+  + +G+        P   T+
Sbjct: 845  FDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGD------FSPTPCTF 898

Query: 240  STIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
              +IDGL K      A+ + F  M  +      A Y               L++G  K+ 
Sbjct: 899  GPLIDGLLKSGRLDDAHEM-FDGMVHYGCRPNSAIYN-------------ILVNGYGKLG 944

Query: 298  KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
             +  A E F+ + + G+ P++ +Y IL+  LC  G++D+  HY      F++L   GL P
Sbjct: 945  HVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHY------FEKLKQAGLDP 998

Query: 358  DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
            DL  YN++IN   +  R      +F  +      PD  T+ SLI  L I     +  
Sbjct: 999  DLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAG 1055



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 136/313 (43%), Gaps = 24/313 (7%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P   ++N L     K+   + +  L+  +   G  P+  TYN++I+   K  R+     +
Sbjct: 823  PDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDL 882

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
               ++   F+P   TF  LI  L    R+ +A  +F  +  +GC  +   YN L+NG  +
Sbjct: 883  YYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGK 942

Query: 208  TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
             GH   A   F+ M            PD  +Y+ ++D LC  AG  +      +  F  L
Sbjct: 943  LGHVDTACEFFKRMVKEG------IRPDLKSYTILVDILCI-AGRVD----DALHYFEKL 991

Query: 268  NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             +      LV        +  +I+GL +  + + A  LF  +   G++P++ TYN LI  
Sbjct: 992  KQAGLDPDLVA-------YNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILN 1044

Query: 328  LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            L   G ++E         +++ L   GL P+++TYN LI  +   G     + I+ +++ 
Sbjct: 1045 LGIVGMIEEAGK------IYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMV 1098

Query: 388  SCFTPDAVTFTSL 400
                P+  TF  L
Sbjct: 1099 GGCDPNTGTFAQL 1111



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 136/326 (41%), Gaps = 25/326 (7%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VFD M   +  R  V ++ I+F  L          S  +++   G   + Y+YN LI+  
Sbjct: 146 VFDLM-QRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFL 204

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            + G       V  R++     P   TF++L+        I     L  ++   G   ++
Sbjct: 205 LQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNI 264

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           +TY   I  L R G    A  + + M +        C PD +TY+ +ID LC    +A  
Sbjct: 265 YTYTICIRVLGRDGKIDEAYRIMKRMDDDG------CGPDVVTYTVLIDALC----TARK 314

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L    M  F+ + K + + P        + ++ L+D       L    +++  +   G  
Sbjct: 315 LD-DAMCLFTKM-KSSSHKPDK------VTYVTLLDKFSDCGHLDKVEKIWTEMEADGYA 366

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+VVT+ IL+  LC  G+++E       F L   +   G+ P+L+TYN LI+   +  R+
Sbjct: 367 PDVVTFTILVNALCKAGRINEA------FDLLDTMRKQGVLPNLHTYNTLISGLLRANRL 420

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
                +F  +      P A T+  LI
Sbjct: 421 DDALDLFSNMESLGVEPTAYTYILLI 446



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 7/184 (3%)

Query: 62   EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
            +G + S   ++A  +FD M++    RP    +NIL     K  H DT    FKR+   G+
Sbjct: 903  DGLLKSGRLDDAHEMFDGMVHY-GCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGI 961

Query: 122  FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
             PD  +Y IL++  C  GRV        ++ ++   PD V +  +I  L    R  EA +
Sbjct: 962  RPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALS 1021

Query: 182  LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
            LF +++  G   D++TYN+LI  L   G    A  ++EE+     +F +  +P+  TY+ 
Sbjct: 1022 LFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEEL-----QF-IGLKPNVFTYNA 1075

Query: 242  IIDG 245
            +I G
Sbjct: 1076 LIRG 1079



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 6/156 (3%)

Query: 87   RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            RP + S+ IL   L      D  L  F++L   GL PD   YN++IN   +  R      
Sbjct: 962  RPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALS 1021

Query: 147  VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            +   +      PD  T+ SLI +L     I EA  ++ +L+  G + +VFTYN LI G  
Sbjct: 1022 LFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYT 1081

Query: 207  RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             +G++ +A  ++++M  G       C+P+  T++ +
Sbjct: 1082 LSGNSELAYGIYKKMMVGG------CDPNTGTFAQL 1111



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 103/262 (39%), Gaps = 59/262 (22%)

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           RV     V   + R     +  T+  + K L     + +A +   K+R  G  L+ ++YN
Sbjct: 139 RVEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYN 198

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LI+ L ++G    AL ++  M +         +P   T+S ++                
Sbjct: 199 GLIHFLLQSGFCKEALEVYRRMVSEG------LKPSLKTFSALM---------------- 236

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            +AS    N                              +K    L + +   GL PN+ 
Sbjct: 237 -VASGKRRN------------------------------IKTVMGLLEEMESMGLRPNIY 265

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY I IR L  DG++DE       + + KR++  G  PD+ TY +LI+  C   ++    
Sbjct: 266 TYTICIRVLGRDGKIDEA------YRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAM 319

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F ++  S   PD VT+ +L+
Sbjct: 320 CLFTKMKSSSHKPDKVTYVTLL 341



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 32/170 (18%)

Query: 267 LNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +  MAF F L++ Q +  N   +L +   L     L+ A    + +  AG + N  +YN 
Sbjct: 140 VEDMAFVFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNG 199

Query: 324 LIRGLCNDGQMDET-----------------------------KHYETVFLLFKRLNSTG 354
           LI  L   G   E                              ++ +TV  L + + S G
Sbjct: 200 LIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMG 259

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           L P++YTY I I    + G++   + I  R+      PD VT+T LI  L
Sbjct: 260 LRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDAL 309


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 169/399 (42%), Gaps = 72/399 (18%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGD+     N+A  +F+ M+  R   P ++++N +   L K +  D   ++ +++   G+
Sbjct: 229 EGDV-----NKACDLFNEMVQ-RGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGV 282

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD +TYN LI  +   G+      V  ++      PD VT  SL+  LC   +I +A  
Sbjct: 283 LPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARD 342

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA------------------- 222
           +F  + + G + D+F+Y  ++NG    G  +    LF  M                    
Sbjct: 343 VFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYA 402

Query: 223 ------------NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL-GFSCMASFSALNK 269
                       N   E GV  EPD +TYST+I  LC+     + +  F+ M        
Sbjct: 403 KCGMLDRATIIFNEMREQGV--EPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPS 460

Query: 270 MAFYFPLVRVQCL------------------------CLNFLCLIDGLCKISKLKIAREL 305
           ++ Y  L++  C                         C NF  +I+ LCK+ ++  A+ +
Sbjct: 461 ISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNF--IINNLCKLGRVMDAQNI 518

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F      GL PNV+ YN L+ G C  G+M      E    +F  + S G+ P++  Y  L
Sbjct: 519 FDFTISIGLHPNVMVYNTLMDGYCLVGKM------ENALRVFDVMVSAGIQPNVVVYGTL 572

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +N +CK+GR+  G  +F  IL     P    +  ++  L
Sbjct: 573 VNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGL 611



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 170/407 (41%), Gaps = 55/407 (13%)

Query: 5   YKINGRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGD 64
           Y   G+ + A R+S+K TS                +  + D  +L   +   CK    G 
Sbjct: 296 YSSTGQWKEAVRVSKKMTS----------------QGILPDVVTLNSLMASLCK---HGK 336

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           I      +A  VFD M  M+  +  + S+ I+    A       +  LF  +   G+ PD
Sbjct: 337 I-----KDARDVFDSMA-MKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPD 390

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            + +N+LI  + K G +    ++   +      PD VT++++I  LC   ++ +A   F 
Sbjct: 391 SHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFN 450

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           ++   G    + TY+ LI G C  G  + A +L  +M N          PD   ++ II+
Sbjct: 451 QMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKG------MRPDIGCFNFIIN 504

Query: 245 GLCKEA---GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
            LCK      + N   F+               P V V      +  L+DG C + K++ 
Sbjct: 505 NLCKLGRVMDAQNIFDFTISIGL---------HPNVMV------YNTLMDGYCLVGKMEN 549

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  +F  +  AG+ PNVV Y  L+ G C  G++DE         LF+ +   G+ P    
Sbjct: 550 ALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEG------LSLFREILHKGIKPSTTL 603

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
           YNI+++   + GR     V F  +  S    D  T++ ++  L  NS
Sbjct: 604 YNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNS 650



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 128/279 (45%), Gaps = 27/279 (9%)

Query: 109 VLSLFKRLNLTG----LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
            ++LF R++       L P  +TY IL++C  +  R        G++L++    D +  +
Sbjct: 88  AVALFNRVSRAHGPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMIS 147

Query: 165 SLIKDLCAESRIMEA-AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           +L++ LC   R  EA   L  ++   GC  DVF+Y  ++  LC    +  A  L   MA 
Sbjct: 148 NLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAE 207

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
           G    G VC P+A+ Y+T+IDG  KE G  N         F+ + +      L       
Sbjct: 208 G----GAVCLPNAVAYNTVIDGFFKE-GDVN----KACDLFNEMVQRGISPDLS------ 252

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             + C+++ LCK   +  A  + + +   G++P+  TYN LI G  + GQ  E       
Sbjct: 253 -TYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVS-- 309

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
               K++ S G+ PD+ T N L+   CK G++     +F
Sbjct: 310 ----KKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVF 344



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 155/338 (45%), Gaps = 27/338 (7%)

Query: 69  TPNEALCVFDYMLNM--RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           T  + L   D +L M  +  RP +  FN +   L K        ++F      GL P+  
Sbjct: 473 THGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVM 532

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
            YN L++ +C +G++ +   V   ++ +   P+ V + +L+   C   RI E  +LF ++
Sbjct: 533 VYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREI 592

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G +     YN +++GL + G T+ A   F EM     E G+    D  TYS ++ GL
Sbjct: 593 LHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMT----ESGIAM--DRYTYSIVLGGL 646

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            K + S   +       F  L+ M      V++    LN   +I G+ +I +++ A++LF
Sbjct: 647 FKNSCSDEAILL-----FKELHAMN-----VKIDITTLNI--MIAGMFQIRRVEEAKDLF 694

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL-FPDLYTYNIL 365
            S+ R+GL+P+VVTY+I++  L  +G ++E         +F  + + G   P+    N +
Sbjct: 695 ASISRSGLVPSVVTYSIMMTNLIKEGLVEEADD------MFSSMENAGCEQPNSQLLNHV 748

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           +    +   +        +I    F+ D  T T LI +
Sbjct: 749 VRELLEKREIVRAGTYLSKIDERSFSLDHSTTTLLIDL 786



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 160/367 (43%), Gaps = 47/367 (12%)

Query: 70  PNEALCVFDYMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           P  A+ +F+ +      R   P + ++ IL  C  +       L+ F ++  TGL  D  
Sbjct: 85  PALAVALFNRVSRAHGPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTI 144

Query: 127 TYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
             + L+   C+  R +    ++L R+      PD  ++  ++K LC++ +  +A  L   
Sbjct: 145 MISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRM 204

Query: 186 LRVFG--CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
           +   G  C  +   YNT+I+G  + G    A +LF EM     + G+   PD  TY+ ++
Sbjct: 205 MAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMV----QRGI--SPDLSTYNCVV 258

Query: 244 DGLCK-------EAGSANFLGFSCMASFSALNKMAF-------YFPLVRV---------- 279
           + LCK       EA     +    +      N + +       +   VRV          
Sbjct: 259 NALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGIL 318

Query: 280 -QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG-QMDET 337
              + LN   L+  LCK  K+K AR++F S+   G   ++ +Y I++ G    G  +D T
Sbjct: 319 PDVVTLN--SLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLT 376

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
           +       LF  + S G+ PD + +N+LI  + K G +    +IF  +      PD VT+
Sbjct: 377 E-------LFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTY 429

Query: 398 TSLIKIL 404
           +++I  L
Sbjct: 430 STVIAAL 436



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 144/336 (42%), Gaps = 29/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  +F+ M   +   P V +++ +   L +    D  +  F ++   G+ P   TY+ 
Sbjct: 408 DRATIIFNEMRE-QGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHF 466

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  FC  G +     ++ +++     PD   F  +I +LC   R+M+A  +F      G
Sbjct: 467 LIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIG 526

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +V  YNTL++G C  G    AL +F+ M +         +P+ + Y T+++G CK  
Sbjct: 527 LHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAG------IQPNVVVYGTLVNGYCKVG 580

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L          +      + ++            + GL +  +   A+  F  + 
Sbjct: 581 RIDEGLSLFREILHKGIKPSTTLYNII------------LHGLFQAGRTVPAKVKFHEMT 628

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            +G+  +  TY+I++ GL  +   DE        LLFK L++  +  D+ T NI+I    
Sbjct: 629 ESGIAMDRYTYSIVLGGLFKNSCSDEA------ILLFKELHAMNVKIDITTLNIMIAGMF 682

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTF----TSLIK 402
           +I RV     +F  I  S   P  VT+    T+LIK
Sbjct: 683 QIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIK 718



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 142/332 (42%), Gaps = 29/332 (8%)

Query: 76  VFDYMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL--FPDRYTYNI 130
             D +L+  P     P V S+ I+   L   +       L + +   G    P+   YN 
Sbjct: 162 ALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNT 221

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+ F K G V+    +   +++   +PD  T+  ++  LC    + +A A+  ++   G
Sbjct: 222 VIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKG 281

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D +TYN+LI G   TG    A+ + ++M +     G++  PD +T ++++  LCK  
Sbjct: 282 VLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQ----GIL--PDVVTLNSLMASLCKHG 335

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              +        +    + MA       +     ++  +++G      L    ELF  + 
Sbjct: 336 KIKD--------ARDVFDSMAMKGQKTDI----FSYKIMLNGYATKGCLVDLTELFNLML 383

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+   +N+LI+     G +D         ++F  +   G+ PD+ TY+ +I   C
Sbjct: 384 SDGIAPDSHIFNVLIKAYAKCGMLDRAT------IIFNEMREQGVEPDVVTYSTVIAALC 437

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +IG++      F +++     P   T+  LI+
Sbjct: 438 RIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQ 469


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 144/305 (47%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G  +
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVV 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYV 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 130/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P+ VTFT+LI   C   R++ A  ++ ++      
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGSCKEGDL 327

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
              L +          +       +R+  +   +  LI GLC+  +   A ++ + +   
Sbjct: 328 ETALEY----------RKRMIKENIRLDDVA--YTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLLKEMQRDGYVPSVVT 418


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 145/310 (46%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 127 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 186

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 187 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 246

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+       G     S   L    F
Sbjct: 247 LAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKF 300

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L  A E  + + +  +  + V Y  +I GLC +G
Sbjct: 301 ------------TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEG 348

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +  +   
Sbjct: 349 RPVDAEK-------MLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHV 401

Query: 392 PDAVTFTSLI 401
           P   T+  L+
Sbjct: 402 PSVXTYNVLM 411



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 128/281 (45%), Gaps = 24/281 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V S+N L     +    D    L   +  +G+ PD YTY++LIN  CK  ++     
Sbjct: 156 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 215

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L     P+ VTFT+LI   C   R+  A  ++ ++       D+ TYNTLI GLC
Sbjct: 216 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLC 275

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A  L +EM+          +PD  TY+T+IDG CKE            A+F  
Sbjct: 276 KKGDLNQAHGLIDEMSMKG------LKPDKFTYTTLIDGCCKEG--------DLDAAFEH 321

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +M        ++   + +  +I GLC+  +   A ++ + +   GL P+  TY ++I 
Sbjct: 322 RKRMI----QENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIIN 377

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
             C  G + +         L K +   G  P + TYN+L+N
Sbjct: 378 EFCKKGDVWKGSK------LLKEMQRNGHVPSVXTYNVLMN 412



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 191 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 250

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L     PD +T+ +LI  LC +  + +A  L  ++ + G + D FTY TLI+G C
Sbjct: 251 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCC 310

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ II GLC+E    +            
Sbjct: 311 KEGDLDAAFEHRKRMIQEN------IRLDDVAYTAIISGLCQEGRPVD------------ 352

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G +P+V TYN+L+ 
Sbjct: 353 AEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMN 412

Query: 327 G 327
           G
Sbjct: 413 G 413



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+ +   P + ++N L   L K    +    L   +++ GL PD++TY  LI
Sbjct: 248 AMEIYKQMLS-QSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLI 306

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T++I  LC E R ++A  +  ++   G +
Sbjct: 307 DGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLK 366

Query: 193 LD-----------------------------------VFTYNTLING 204
            D                                   V TYN L+NG
Sbjct: 367 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 95  VLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 148

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI------- 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI       
Sbjct: 149 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 208

Query: 402 KILEINSFFRQV 413
           K+ + N  F ++
Sbjct: 209 KMDDANELFDEM 220


>gi|255661008|gb|ACU25673.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 369

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 155/324 (47%), Gaps = 30/324 (9%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R     V SFNI+   L      D V S+++ +   G   D  TY IL++ FCK G ++ 
Sbjct: 53  REGNRSVASFNIMMRGLFDNGRVDEVNSIWELMKKGGYVEDSITYGILVHGFCKNGYINK 112

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              VL    R     DA  ++++I  LC E+++ +A ++   +   GC+ +   YN LIN
Sbjct: 113 SLRVLETAERKGGVLDAFAYSAMINGLCKETKLEKAISVLNGMIKSGCKPNTHVYNALIN 172

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVV-CEPDAITYSTIIDGLCKEAGSANFLGFSCMA 262
           GL     +  A+ +F EM       G+  C P  +TY+ +I+GLCK   S  F       
Sbjct: 173 GLIGASKSEDAIRVFREM-------GITHCSPTIVTYNILINGLCK---SERF-----GE 217

Query: 263 SFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           ++  + +M      P V      + +  L+ GLC   K+++A +L+  + + G  P+V  
Sbjct: 218 AYDLVKEMLEKGLTPSV------ITYSLLMKGLCLGHKIEMALQLWNQVTKNGFKPDVQM 271

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           +N LI GLC+ G+       +    L+  +N     P+L T N L+  F K G + +  V
Sbjct: 272 HNTLIHGLCSVGKT------QLALSLYLDMNYWNCAPNLVTQNTLMEGFYKDGDMRNALV 325

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           I+ RIL +   PD +++   +K L
Sbjct: 326 IWARILKNELQPDIISYNITLKGL 349



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 133/300 (44%), Gaps = 29/300 (9%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N F + GR+   F +   + R        +F  +
Sbjct: 7   DGAERVYKDIVDSKVSPDAVVYNAMLNGFYRAGRIKDCFELWEMMGREG-NRSVASFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    R+ E  +++  ++  G   D  TY  L++G C+ G+   +L + E      G
Sbjct: 66  MRGLFDNGRVDEVNSIWELMKKGGYVEDSITYGILVHGFCKNGYINKSLRVLETAERKGG 125

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCL 284
                   DA  YS +I+GLCKE             + S LN M  +   P   V     
Sbjct: 126 VL------DAFAYSAMINGLCKET--------KLEKAISVLNGMIKSGCKPNTHV----- 166

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  LI+GL   SK + A  +F+ +      P +VTYNILI GLC      +++ +   +
Sbjct: 167 -YNALINGLIGASKSEDAIRVFREMGITHCSPTIVTYNILINGLC------KSERFGEAY 219

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L K +   GL P + TY++L+   C   ++     ++ ++  + F PD     +LI  L
Sbjct: 220 DLVKEMLEKGLTPSVITYSLLMKGLCLGHKIEMALQLWNQVTKNGFKPDVQMHNTLIHGL 279



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 112/258 (43%), Gaps = 54/258 (20%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ V + M+     +P    +N L   L      +  + +F+ + +T   P   TYNIL
Sbjct: 147 KAISVLNGMIK-SGCKPNTHVYNALINGLIGASKSEDAIRVFREMGITHCSPTIVTYNIL 205

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK  R    + ++  +L    TP  +T++ L+K LC   +I  A  L+ ++   G 
Sbjct: 206 INGLCKSERFGEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKIEMALQLWNQVTKNGF 265

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + DV  +NTLI+GLC  G T +AL+L+ +M   N      C P+ +T +T          
Sbjct: 266 KPDVQMHNTLIHGLCSVGKTQLALSLYLDMNYWN------CAPNLVTQNT---------- 309

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                L++G  K   ++ A  ++  + +
Sbjct: 310 -------------------------------------LMEGFYKDGDMRNALVIWARILK 332

Query: 312 AGLMPNVVTYNILIRGLC 329
             L P++++YNI ++GLC
Sbjct: 333 NELQPDIISYNITLKGLC 350



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V   N L   L         LSL+  +N     P+  T N L+  F K G + +  V
Sbjct: 266 KPDVQMHNTLIHGLCSVGKTQLALSLYLDMNYWNCAPNLVTQNTLMEGFYKDGDMRNALV 325

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           +  RIL++   PD +++   +K LC+ +RI +A
Sbjct: 326 IWARILKNELQPDIISYNITLKGLCSCNRISDA 358


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 153/310 (49%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G ++ GF +   +L
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVD 262

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             +   +++M+ 
Sbjct: 263 LAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKG--------DLKQAHDLIDEMS- 307

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 308 ---MKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEG 364

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +  +   
Sbjct: 365 RSVDAEK-------MLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNGHA 417

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 418 PSVVTYNVLM 427



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD +      RP V S+N L     +    +    L   +  +G+ PD YTY++LI
Sbjct: 159 AQSVFDAIAKW-GLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLI 217

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 218 NGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 277

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          + D ITY+T+IDG CKE   
Sbjct: 278 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG------LKXDKITYTTLIDGCCKEG-- 329

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                    A+F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 330 ------DLDAAFEHRKRMI----QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 379

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 380 GLKPDTXTYTMIINEFCKKGDVWKGSK------LLKDMQRNGHAPSVVTYNVLMN 428



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 207 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAME 266

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L     PD +T+ +LI  LC +  + +A  L  ++ + G + D  TY TLI+G C
Sbjct: 267 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCC 326

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 327 KEGDLDAAFEHRKRMIQEN------IRLDDVAYTALISGLCQEGRSVD------------ 368

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G  P+VVTYN+L+ 
Sbjct: 369 AEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMN 428

Query: 327 G 327
           G
Sbjct: 429 G 429



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+       +   G       +NIL+   C DG +   +       +F 
Sbjct: 111 VLEHLMKLKYFKLVWGFXXXIXXXGXXXXXXFFNILMHRFCKDGDIRIAQS------VFD 164

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G ++ GF +   +L S   PD  T++ LI
Sbjct: 165 AIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLI 217


>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
 gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
          Length = 439

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 153/318 (48%), Gaps = 27/318 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGL--FPDRYTYNILINCFCKMGRVSHG 144
           P +  FN +   +AK + YD V++L+KR+ N  G+   PD YT NIL+NCFC+  + S  
Sbjct: 8   PSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSA 67

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
              LG++++    PD VT +SL+   C  + I +A  +  ++   G + DV     LI+ 
Sbjct: 68  LSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDT 127

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           LC+    + AL + + M +          P+ +TYS++I GLCK    A+        + 
Sbjct: 128 LCKNRLVVPALEVLKRMKDRG------ISPNVVTYSSLITGLCKSGRLAD--------AE 173

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             L++M       ++    + F  LID   K  KL     +++ + +  + PNV TY+ L
Sbjct: 174 RRLHEMDSK----KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSL 229

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I GLC   ++DE         +   + S G  P++ TY+ L N F K  RV  G  +   
Sbjct: 230 IYGLCMHNRVDEA------IKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDD 283

Query: 385 ILPSCFTPDAVTFTSLIK 402
           +       + V+  +LIK
Sbjct: 284 MPQRGVAANTVSCNTLIK 301



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 115/276 (41%), Gaps = 18/276 (6%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + ++ +   P V +F+ L    AK      V S++K +    + P+ +TY+ LI   C  
Sbjct: 177 HEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMH 236

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
            RV     +L  ++    TP+ VT+++L       SR+ +   L   +   G   +  + 
Sbjct: 237 NRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSC 296

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           NTLI G  + G   +AL +F  M +     G++  P+  +Y+ ++ GL      AN    
Sbjct: 297 NTLIKGYFQAGKIDLALGVFGYMTSN----GLI--PNIRSYNIVLAGLF-----ANGEVE 345

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
             ++ F  + K        R     + +  +I G+CK   +K A +LF  L    + P+ 
Sbjct: 346 KALSRFEHMQK-------TRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDF 398

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
             Y I+I  L   G   E       +    R N + 
Sbjct: 399 KAYTIMIAELNRAGMRTEADALNRFYQKHVRQNESA 434



 Score = 39.7 bits (91), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL VF YM +     P + S+NI+   L      +  LS F+ +  T    D  TY I+I
Sbjct: 312 ALGVFGYMTS-NGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMI 370

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           +  CK   V   + +  ++      PD   +T +I +L       EA AL
Sbjct: 371 HGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEADAL 420


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 155/347 (44%), Gaps = 36/347 (10%)

Query: 79  YMLNMRPSR----PPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILIN 133
           ++L+  P R    P   S+N++   LA+   +   L+L++R+ +   + P  +T+ +   
Sbjct: 124 HLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAAR 183

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             C++GR      +L  + R    PDAV + ++I  LC +  + EAA L  ++ + GC  
Sbjct: 184 ALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAA 243

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAG 251
           DV T++ ++ G+C  G    A  L + M          C P  +TY  ++ GLC  ++A 
Sbjct: 244 DVNTFDDVVRGMCGLGRVREAARLVDRMMTKG------CMPGVMTYGFLLQGLCRVRQAD 297

Query: 252 SA---------------NFLGFSCMASFSALNKMAFY--FPLVRVQCLCLNFLCLIDGLC 294
            A               N +   C+A          Y    L   Q     +  L+ GLC
Sbjct: 298 EARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLC 357

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K+ ++  A  L + + + G  PNVVTY I++   C +G  D+T+       L + +++ G
Sbjct: 358 KLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTR------ALLEEMSAKG 411

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L  +   YN +I   CK GR+     +   +      PD  ++ ++I
Sbjct: 412 LTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTII 458



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 156/338 (46%), Gaps = 41/338 (12%)

Query: 90  VTSFN-ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           V  FN ++ GCLA+ K  +    L++ + L G  PD +TY+IL++  CK+GR+     +L
Sbjct: 311 VVLFNTVIGGCLAEGKLAEAT-ELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLL 369

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
             + +  F P+ VT+T ++   C      +  AL  ++   G  L+   YN +I  LC+ 
Sbjct: 370 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKD 429

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----------------KEAGS 252
           G    A+ L +EM +        C PD  +Y+TII  LC                +E   
Sbjct: 430 GRMDEAMGLIQEMRSQG------CNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVV 483

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC---------LIDGLCKISKLKIAR 303
           AN + ++ +    AL +   +   VR+    +   C         LI  +CK   +  + 
Sbjct: 484 ANGITYNTI--IHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSL 541

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            L + +   G+ PN V+YNILI  LC +      +       L K++ + GL PD+ TYN
Sbjct: 542 VLLEEMAEKGIKPNNVSYNILISELCKE------RRVRDALELSKQMLNQGLAPDIVTYN 595

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            LIN  CK+G + +   +  ++      PD +T+  LI
Sbjct: 596 TLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 633



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 142/300 (47%), Gaps = 26/300 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++ I+     K   +D   +L + ++  GL  +   YN +I   CK GR+     +
Sbjct: 379 PNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGL 438

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +      PD  ++ ++I  LC   ++ EA  +F  L   G   +  TYNT+I+ L R
Sbjct: 439 IQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLR 498

Query: 208 TGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            G    A+ L +EM  +G       C  D ++Y+ +I  +CK+         +   S   
Sbjct: 499 DGRWQDAVRLAKEMILHG-------CSLDVVSYNGLIKAMCKDG--------NVDRSLVL 543

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L +MA       ++   +++  LI  LCK  +++ A EL + +   GL P++VTYN LI 
Sbjct: 544 LEEMAEKG----IKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLIN 599

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G M           L ++L++  + PD+ TYNILI+  CK+  +    ++  R +
Sbjct: 600 GLCKMGWM------HAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAM 653



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 163/411 (39%), Gaps = 79/411 (19%)

Query: 72  EALCVFDYMLNMRPSRPPVT-SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +AL ++  M++ R   PP T +F +    L +    D  L+L + +   G  PD   Y  
Sbjct: 157 DALALYRRMVH-RDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQT 215

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  C  G V+    +L  +L      D  TF  +++ +C   R+ EAA L  ++   G
Sbjct: 216 VIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKG 275

Query: 191 CELDVFTYNTLINGLCRTGHT---------IVALN--LFEEMANG---NGEFGVV----- 231
           C   V TY  L+ GLCR             +  LN  LF  +  G    G+         
Sbjct: 276 CMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYE 335

Query: 232 ------CEPDAITYSTIIDGLCK--EAGSANFL-------GFS--------CMASF---S 265
                 C+PDA TYS ++ GLCK    GSA  L       GF+         + SF    
Sbjct: 336 TMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNG 395

Query: 266 ALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
             +        +  + L LN   +  +I  LCK  ++  A  L Q +   G  P++ +YN
Sbjct: 396 MWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYN 455

Query: 323 ILIRGLCNDGQMDETKH-----------------------------YETVFLLFKRLNST 353
            +I  LCN+ QM+E +H                             ++    L K +   
Sbjct: 456 TIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 515

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G   D+ +YN LI   CK G V    V+   +      P+ V++  LI  L
Sbjct: 516 GCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISEL 566



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 10/139 (7%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  S    +K  CK   +G++     + +L + + M   +  +P   S+NIL   L K +
Sbjct: 520 DVVSYNGLIKAMCK---DGNV-----DRSLVLLEEMAE-KGIKPNNVSYNILISELCKER 570

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
                L L K++   GL PD  TYN LIN  CKMG +     +L ++      PD +T+ 
Sbjct: 571 RVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYN 630

Query: 165 SLIKDLCAESRIMEAAALF 183
            LI   C + R+++ AA+ 
Sbjct: 631 ILISWHC-KVRLLDDAAML 648


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 138/290 (47%), Gaps = 24/290 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +  V ++N+      K       + +F  +   G+ P+  TYN LI+C CK G VS  + 
Sbjct: 322 KRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWE 381

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  + RS  TPD VT   L+  LC   R+ +A  LF +L   G   DV++Y  LI+G C
Sbjct: 382 IVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCC 441

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            +     A+NL  +M   N        P  +TYS +IDGLC+    +N        ++  
Sbjct: 442 TSRRMGEAMNLLRDMHLKN------LVPHIVTYSCLIDGLCRSGRISN--------AWRL 487

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           LN+M    PL       + +  L+D L K   L  A  LF  + + GL P+V+ Y I+I 
Sbjct: 488 LNEMHVKGPLPDT----ITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMID 543

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           G C   ++DE  +      LF+ ++   L PD+ TY IL N   K G  S
Sbjct: 544 GYCKSERIDEAIN------LFREMHMKNLVPDIVTYTILFNAVFKSGSNS 587



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 149/331 (45%), Gaps = 29/331 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD M+N R   P + +   L G      + D    LF  +   G   D +TYN+ 
Sbjct: 273 EAREMFDEMVN-RGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVF 331

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ +CK+GRV     V   + R    P+ VT+ SLI  LC    +  A  +   +   G 
Sbjct: 332 IHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGL 391

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KE 249
             D+ T   L++GLC++     A+ LF ++     E G+   PD  +Y+ +I G C  + 
Sbjct: 392 TPDIVTCCILLDGLCKSKRLDQAILLFNQLV----ESGLT--PDVWSYTILIHGCCTSRR 445

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
            G A           + L  M     +  +    + + CLIDGLC+  ++  A  L   +
Sbjct: 446 MGEA----------MNLLRDMHLKNLVPHI----VTYSCLIDGLCRSGRISNAWRLLNEM 491

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G +P+ +TY+IL+  L     +DE         LF ++   GL PD+  Y I+I+ +
Sbjct: 492 HVKGPLPDTITYSILLDALWKKQHLDEA------VFLFNQMIKRGLEPDVMCYTIMIDGY 545

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           CK  R+     +F  +      PD VT+T L
Sbjct: 546 CKSERIDEAINLFREMHMKNLVPDIVTYTIL 576



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 142/275 (51%), Gaps = 24/275 (8%)

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           Y+I+I+C C+ G V  GF     ++ +   P+  T+ SLI+ LC   + +E   L  ++ 
Sbjct: 188 YSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMI 247

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G ++ V+ +  LI+GLC+ G  + A  +F+EM N         EP+ +T + ++ G C
Sbjct: 248 RRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRG------YEPNIVTCTALMGGYC 301

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
            + G+ +         F A+ +  F   +         +   I G CK+ +++ A  +F 
Sbjct: 302 LK-GNVDM----ARELFDAIGEWGFKRDV-------WTYNVFIHGYCKVGRVRDAVRVFD 349

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            + R G++PN+VTYN LI  LC  G++  +  +E V    K ++ +GL PD+ T  IL++
Sbjct: 350 EMCREGVVPNIVTYNSLIDCLCKAGEV--SGAWEIV----KTMHRSGLTPDIVTCCILLD 403

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             CK  R+    ++F +++ S  TPD  ++T LI 
Sbjct: 404 GLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIH 438



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 148/350 (42%), Gaps = 32/350 (9%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN-CFCKMG 139
           +N   S   +  FN    CL KT  + T ++LF +               +I  CF  +G
Sbjct: 27  INSFHSHSSLAHFNKHLTCLMKTNQHSTAIALFNQNEYNNFITPCIITLTIIITCFFHLG 86

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            VS  F + G+IL+  +  D V   +++K LC    +++A     ++   G  L+  +Y 
Sbjct: 87  HVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYG 146

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEF--GVVCEPDAITYSTIIDGLCKEA-GSANFL 256
            LINGLC  G    A+NL   +     +   G   + + + YS +ID LC+       F 
Sbjct: 147 ILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFE 206

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFL----------------------CLIDGLC 294
            ++ M           Y  L+R  C    FL                       LIDGLC
Sbjct: 207 FYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLC 266

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K   L  ARE+F  +   G  PN+VT   L+ G C  G +D  +       LF  +   G
Sbjct: 267 KNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARE------LFDAIGEWG 320

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              D++TYN+ I+ +CK+GRV     +F  +      P+ VT+ SLI  L
Sbjct: 321 FKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCL 370



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 152/350 (43%), Gaps = 59/350 (16%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  ++I+  CL +    D     +  +   G+ P+ +TY  LI   C +G+   GF ++ 
Sbjct: 185 VVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVD 244

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL----------------------- 186
            ++R         FT LI  LC    ++EA  +F ++                       
Sbjct: 245 EMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKG 304

Query: 187 ------------RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234
                         +G + DV+TYN  I+G C+ G    A+ +F+EM       GVV  P
Sbjct: 305 NVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCRE----GVV--P 358

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           + +TY+++ID LCK    +           S L       P +   C+      L+DGLC
Sbjct: 359 NIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLT------PDIVTCCI------LLDGLC 406

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K  +L  A  LF  L  +GL P+V +Y ILI G C   +M E  +      L + ++   
Sbjct: 407 KSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMN------LLRDMHLKN 460

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           L P + TY+ LI+  C+ GR+S+ + +   +      PD +T++ L+  L
Sbjct: 461 LVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDAL 510



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 128/277 (46%), Gaps = 29/277 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ VFD M       P + ++N L  CL K         + K ++ +GL PD  T  IL
Sbjct: 343 DAVRVFDEMCR-EGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCIL 401

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK  R+    ++  +++ S  TPD  ++T LI   C   R+ EA  L   + +   
Sbjct: 402 LDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNL 461

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              + TY+ LI+GLCR+G    A  L  EM +  G       PD ITYS ++D L K+  
Sbjct: 462 VPHIVTYSCLIDGLCRSGRISNAWRLLNEM-HVKGPL-----PDTITYSILLDALWKK-- 513

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC---LIDGLCKISKLKIARELFQS 308
                          L++  F F  +  + L  + +C   +IDG CK  ++  A  LF+ 
Sbjct: 514 -------------QHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFRE 560

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +    L+P++VTY IL   +   G    +  YE  F+
Sbjct: 561 MHMKNLVPDIVTYTILFNAVFKSG----SNSYEWKFV 593



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 17/115 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F+ M+  R   P V  + I+     K++  D  ++LF+ +++  L PD  TY I
Sbjct: 517 DEAVFLFNQMIK-RGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTI 575

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           L N   K G  S+ +                 F ++I+D+    R+++  A   K
Sbjct: 576 LFNAVFKSGSNSYEW----------------KFVNVIRDINPPPRVLKYLAALCK 614


>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 156/336 (46%), Gaps = 26/336 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F+  +      P V SFN+    + +       L L +R+   G  PD  T NI
Sbjct: 209 QDAVALFEGWIQGGAYSPDVWSFNVAIKGVCQVGDVQKALELVERMAEFGCSPDTVTNNI 268

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           L+   C++  VS G  VL R+ R     P+ VT+TS+I   C   R+ +A A++  +   
Sbjct: 269 LVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGC 328

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +  TYN LING  + G+   A+ ++++M          C PD +T+ST+IDG C+ 
Sbjct: 329 GTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRR------CPPDVVTFSTLIDGYCR- 381

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
            G  +      M +++ +++        ++Q     F  +I   CK ++   A    + L
Sbjct: 382 CGQLD----DAMRTWTEMSQY-------QIQPNAHTFSIIILSFCKQNRSAEALRFLKEL 430

Query: 310 P-RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
             R  + P     N +I  LC  G++DE        L+   +   G  PD YTY ILI  
Sbjct: 431 NMRTDIAPRAFICNPVIDVLCKGGKVDEAN------LILMEMEGKGCRPDKYTYTILIIG 484

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            C  GR+S     F +++ +  +PD++T  S I  L
Sbjct: 485 HCMKGRISEAITFFNKMVDTGCSPDSITVNSFIGCL 520



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 141/313 (45%), Gaps = 37/313 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL-FPDRYTYNILINCFCKMGRVSHGFV 146
           P   + NIL G L + K       + +RL   G+  P+  TY  +I+ +CK GR+     
Sbjct: 261 PDTVTNNILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMA 320

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   ++    TP+AVT+  LI        +  A A++ ++ +  C  DV T++TLI+G C
Sbjct: 321 VYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYC 380

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G    A+  + EM+    ++ +  +P+A T+S II   CK+  SA  L F        
Sbjct: 381 RCGQLDDAMRTWTEMS----QYQI--QPNAHTFSIIILSFCKQNRSAEALRF-----LKE 429

Query: 267 LNKMAFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           LN        +R       F+C  +ID LCK  K+  A  +   +   G  P+  TY IL
Sbjct: 430 LN--------MRTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGCRPDKYTYTIL 481

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG---------RV 375
           I G C  G++ E          F ++  TG  PD  T N  I C  K G         ++
Sbjct: 482 IIGHCMKGRISEA------ITFFNKMVDTGCSPDSITVNSFIGCLLKAGMPSEVDRIMKI 535

Query: 376 SSGFVIFGRILPS 388
           +SG     + +PS
Sbjct: 536 ASGSTSSSQEVPS 548



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 131/317 (41%), Gaps = 62/317 (19%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           P   S+  +   L ++  +   L LF ++ + +G FP+    + L       G +     
Sbjct: 119 PSAHSYRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAAAA 178

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC-ELDVFTYNTLINGL 205
           +L +  +     +A  +  L+       R+ +A ALF      G    DV+++N  I G+
Sbjct: 179 LLSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGV 238

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G    AL L E MA    EFG  C PD +T + ++ GLC                  
Sbjct: 239 CQVGDVQKALELVERMA----EFG--CSPDTVTNNILVGGLC------------------ 274

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL-MPNVVTYNIL 324
                                        ++ ++   RE+ + L R G+ MPNVVTY  +
Sbjct: 275 -----------------------------RVKEVSRGREVLRRLQRDGVCMPNVVTYTSV 305

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I G C  G+M      E    ++  +   G  P+  TYN+LIN + K G + S   ++ +
Sbjct: 306 ISGYCKSGRM------EDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQ 359

Query: 385 ILPSCFTPDAVTFTSLI 401
           ++     PD VTF++LI
Sbjct: 360 MILRRCPPDVVTFSTLI 376


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 161/333 (48%), Gaps = 27/333 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL + + ML  +   P V ++NI+   L K       L + + +      PD  TYN L
Sbjct: 335 EALQLLNLMLQ-KDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSL 393

Query: 132 INCFCKMGRVSHGFVVLGRILR-SCFT-PDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +   C  G +     +L  +L+ S +T PD ++F +LI  LC  +R+ +A  ++  L   
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVEK 453

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
               D+ T N L+N   ++G    A+ L+++++N      +V  P++ TY+T+IDG CK 
Sbjct: 454 LGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSK----IV--PNSDTYTTMIDGFCKT 507

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                  G  C    S L    F            ++ CL+  LCK   L  A  LF+ +
Sbjct: 508 GMLNVAKGLLCKMRLSELPPSVF------------DYNCLLSSLCKKGTLDQAWRLFEEM 555

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            R    P+V+++NI+I G    G +   K  E++ +    ++  GL PDL+TY+ LIN F
Sbjct: 556 QRDDSFPDVISFNIMIDGSLKAGDI---KSAESLLV---GMSHAGLSPDLFTYSKLINRF 609

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            K+G +      F +++ S F PDA    S++K
Sbjct: 610 LKLGYLDEAISFFDKMIDSGFEPDAHICDSVLK 642



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 146/315 (46%), Gaps = 26/315 (8%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
            + ++ IL     K    D  + L K +   GL  D   Y  LI  FC  G +  G  + 
Sbjct: 211 SLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALF 270

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
             +L    +P A+T+ +LI+  C   R+ EA+ +F  +   G   +V+TY  LI+GLC  
Sbjct: 271 DEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGV 330

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
           G T  AL L   M   +       EP+ +TY+ II+ LCK++  A+ L            
Sbjct: 331 GKTKEALQLLNLMLQKDE------EPNVVTYNIIINKLCKDSLVADAL------------ 372

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM--PNVVTYNILIR 326
           ++       R +   + +  L+ GLC    L  A +L   + +      P+V+++N LI 
Sbjct: 373 EIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIH 432

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC   ++ +    +   LL ++L +     D+ T NIL+N   K G V+    ++ +I 
Sbjct: 433 GLCKGNRLHQA--LDIYDLLVEKLGA----GDIVTTNILLNSTLKSGDVNKAMELWKQIS 486

Query: 387 PSCFTPDAVTFTSLI 401
            S   P++ T+T++I
Sbjct: 487 NSKIVPNSDTYTTMI 501



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 144/316 (45%), Gaps = 30/316 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++NIL   L +   +   +SL + +    L PD  +YN +I  FC+   +     +  
Sbjct: 142 VYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLAN 201

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +  S  +   VT+  LI   C   ++ EA  L  +++  G E D+  Y +LI G C  G
Sbjct: 202 EMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCG 261

Query: 210 HTIVALNLFEE-MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                  LF+E +  G+        P AITY+T+I G CK       LG    AS     
Sbjct: 262 ELDRGKALFDEVLERGDS-------PCAITYNTLIRGFCK-------LGRLKEAS----- 302

Query: 269 KMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
              F F + R V+     +  LIDGLC + K K A +L   + +    PNVVTYNI+I  
Sbjct: 303 -EIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINK 361

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC D  + +    E V L+ KR       PD  TYN L+   C  G +     +   +L 
Sbjct: 362 LCKDSLVADA--LEIVELMKKRRTR----PDNITYNSLLGGLCAKGDLDEASKLLYLMLK 415

Query: 388 -SCFT-PDAVTFTSLI 401
            S +T PD ++F +LI
Sbjct: 416 DSSYTDPDVISFNALI 431



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 145/331 (43%), Gaps = 35/331 (10%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N L   L ++++++   S ++++  T  F +  + + L+ CF +M +      VL  +L+
Sbjct: 76  NNLMATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLK 135

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
             F  +   +  L+K LC      +A +L  ++R      DV +YNT+I G C       
Sbjct: 136 RGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEK 195

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN-KMAF 272
           AL L  EM  G+G     C    +T+  +ID  CK       +G         L   +  
Sbjct: 196 ALQLANEM-QGSG-----CSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIV 249

Query: 273 YFPLVRVQCLC----------------------LNFLCLIDGLCKISKLKIARELFQSLP 310
           Y  L+R  C C                      + +  LI G CK+ +LK A E+F+ + 
Sbjct: 250 YTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMM 309

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ PNV TY  LI GLC  G+  E    + + L+ ++       P++ TYNI+IN  C
Sbjct: 310 ERGVRPNVYTYTGLIDGLCGVGKTKEA--LQLLNLMLQKDEE----PNVVTYNIIINKLC 363

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K   V+    I   +      PD +T+ SL+
Sbjct: 364 KDSLVADALEIVELMKKRRTRPDNITYNSLL 394



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 151/334 (45%), Gaps = 29/334 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+N +     + K  +  L L   +  +G      T+ ILI+ FCK G++     +
Sbjct: 175 PDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMGL 234

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +       D + +TSLI+  C    +    ALF ++   G      TYNTLI G C+
Sbjct: 235 LKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  +FE M     E GV   P+  TY+ +IDGLC    +   L          L
Sbjct: 295 LGRLKEASEIFEFMM----ERGV--RPNVYTYTGLIDGLCGVGKTKEALQL--------L 340

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N M        V    + +  +I+ LCK S +  A E+ + + +    P+ +TYN L+ G
Sbjct: 341 NLMLQKDEEPNV----VTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGG 396

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G +DE    + ++L+ K  +S+   PD+ ++N LI+  CK  R+     I+  ++ 
Sbjct: 397 LCAKGDLDEAS--KLLYLMLK--DSSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVE 452

Query: 388 SCFTPDAVT----FTSLIKILEIN---SFFRQVA 414
                D VT      S +K  ++N     ++Q++
Sbjct: 453 KLGAGDIVTTNILLNSTLKSGDVNKAMELWKQIS 486



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 152/349 (43%), Gaps = 34/349 (9%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD +L  R   P   ++N L     K         +F+ +   G+ P+ YTY  LI+  
Sbjct: 269 LFDEVLE-RGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGL 327

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C +G+      +L  +L+    P+ VT+  +I  LC +S + +A  +   ++      D 
Sbjct: 328 CGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDN 387

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK------- 248
            TYN+L+ GLC  G    A  L   M   +       +PD I+++ +I GLCK       
Sbjct: 388 ITYNSLLGGLCAKGDLDEASKLLYLMLKDSS----YTDPDVISFNALIHGLCKGNRLHQA 443

Query: 249 -----------EAG---SANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDG 292
                       AG   + N L  S + S      M  +  +   + +     +  +IDG
Sbjct: 444 LDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDG 503

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
            CK   L +A+ L   +  + L P+V  YN L+  LC  G +D+       + LF+ +  
Sbjct: 504 FCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTLDQ------AWRLFEEMQR 557

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              FPD+ ++NI+I+   K G + S   +   +  +  +PD  T++ LI
Sbjct: 558 DDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTYSKLI 606



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T ++A  +F+ M     S P V SFNI+     K     +  SL   ++  GL PD +TY
Sbjct: 544 TLDQAWRLFEEM-QRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGMSHAGLSPDLFTY 602

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
           + LIN F K+G +        +++ S F PDA    S++K
Sbjct: 603 SKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLK 642


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 158/332 (47%), Gaps = 32/332 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL + D ML  R  +P V ++ +L   + K+  +   + +   +   G  P+  TYN++
Sbjct: 155 DALSLLDDMLR-RECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVI 213

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  C+  RV     +L R+    F PD V++T+++K LCA  R  +   LF ++    C
Sbjct: 214 INGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNC 273

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T++ L+   CR G    A+ + + M+    E G  C  +    + +I+ +CK+  
Sbjct: 274 VPNEVTFDMLVRFFCRGGMVERAIEVLDRMS----EHG--CTANTTLCNIVINSICKQGR 327

Query: 252 SANFLGFSCMASFSALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
             +        +F  LN M  Y   P        +++  ++ GLC+  + + A+EL   +
Sbjct: 328 VDD--------AFEFLNNMGSYGCSPDT------ISYTTVLKGLCRAGRWEDAKELLNEM 373

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            R    PN VT+N  I  LC  G +D+        LL +++   G    + TYN L+N F
Sbjct: 374 VRKNCPPNEVTFNTFICILCQKGLIDQ------AILLIEQMPEYGCSVGIVTYNALVNGF 427

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           C  GRV S   +F   LP    P+ +T+T+L+
Sbjct: 428 CVQGRVDSALELFNS-LPC--EPNTITYTTLL 456



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 138/351 (39%), Gaps = 54/351 (15%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           NI+   + K    D        +   G  PD  +Y  ++   C+ GR      +L  ++R
Sbjct: 316 NIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVR 375

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
               P+ VTF + I  LC +  I +A  L  ++  +GC + + TYN L+NG C  G    
Sbjct: 376 KNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDS 435

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMA 271
           AL LF  +          CEP+ ITY+T++ GLC  +   +A  L    M +   LN + 
Sbjct: 436 ALELFNSLP---------CEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVT 486

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL--- 328
           F                L+   C+   ++ A EL Q +   G  PN++T+N L+ G+   
Sbjct: 487 FNV--------------LVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITED 532

Query: 329 CNDGQMDETKH--------------------------YETVFLLFKRLNSTGLFPDLYTY 362
           CN  +  E  H                           E    +F  +   G+ P    Y
Sbjct: 533 CNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMY 592

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           N +++  CK          F  ++ +   P+  T+  LI+ L      ++ 
Sbjct: 593 NKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLAREGLLKEA 643



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 113/248 (45%), Gaps = 31/248 (12%)

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
            PD    T LI++LC   R  +AA +       G  +DVF YNTL+ G CR G    A  
Sbjct: 67  APDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARR 126

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           L   M            PDA TY+ +I GLC      + L        S L+ M      
Sbjct: 127 LIASMP---------VPPDAYTYTPLIRGLCDRGRVGDAL--------SLLDDM------ 163

Query: 277 VRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
           +R +C    + +  L++ +CK S    A ++   +   G  PN+VTYN++I G+C + ++
Sbjct: 164 LRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRV 223

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           D+ +       +  RL+S G  PD  +Y  ++   C   R     V+F  ++ +   P+ 
Sbjct: 224 DDARQ------ILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNE 277

Query: 395 VTFTSLIK 402
           VTF  L++
Sbjct: 278 VTFDMLVR 285



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 158/399 (39%), Gaps = 58/399 (14%)

Query: 52  FLKERCKSSGEGDITSI---------TPN--------EALCVFDYMLNMRPS-------- 86
            L+  CKSSG G    +         TPN          +C  D + + R          
Sbjct: 178 LLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYG 237

Query: 87  -RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
            +P   S+  +   L   K ++ V  LF  +      P+  T+++L+  FC+ G V    
Sbjct: 238 FQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAI 297

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            VL R+     T +      +I  +C + R+ +A      +  +GC  D  +Y T++ GL
Sbjct: 298 EVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGL 357

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA-GSANFLGFSCMASF 264
           CR G    A  L  EM   N      C P+ +T++T I  LC++       L    M  +
Sbjct: 358 CRAGRWEDAKELLNEMVRKN------CPPNEVTFNTFICILCQKGLIDQAILLIEQMPEY 411

Query: 265 SALNKMAFYFPLVRVQCL-------------------CLNFLCLIDGLCKISKLKIAREL 305
                +  Y  LV   C+                    + +  L+ GLC   +L  A EL
Sbjct: 412 GCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCEPNTITYTTLLTGLCHAERLDAAAEL 471

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
              + +     NVVT+N+L+   C  G ++E         L +++   G  P+L T+N L
Sbjct: 472 LAEMMQNDCPLNVVTFNVLVSFFCQKGFVEE------AIELVQQMMEHGCTPNLITFNTL 525

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++   +         +   ++    + D +T++S++ +L
Sbjct: 526 LDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVL 564



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 138/326 (42%), Gaps = 58/326 (17%)

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL----------------------- 148
           L +R    G  PD Y    LI   C+ GR S    VL                       
Sbjct: 57  LVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYC 116

Query: 149 --GR-------ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
             GR       I      PDA T+T LI+ LC   R+ +A +L   +    C+  V TY 
Sbjct: 117 RYGRLDAARRLIASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYT 176

Query: 200 TLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
            L+  +C++     A+ + +EM A G       C P+ +TY+ II+G+C+E    +    
Sbjct: 177 VLLEAVCKSSGFGQAMKVLDEMRAKG-------CTPNIVTYNVIINGMCREDRVDD---- 225

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
               +   LN+++ Y      Q   +++  ++ GLC   + +    LF  +     +PN 
Sbjct: 226 ----ARQILNRLSSYG----FQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNE 277

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           VT+++L+R  C  G +      E    +  R++  G   +    NI+IN  CK GRV   
Sbjct: 278 VTFDMLVRFFCRGGMV------ERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDA 331

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKIL 404
           F     +     +PD +++T+++K L
Sbjct: 332 FEFLNNMGSYGCSPDTISYTTVLKGL 357



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 121/282 (42%), Gaps = 46/282 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FN     L +    D  + L +++   G      TYN L+N FC  GRV     +
Sbjct: 380 PNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALEL 439

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +   C  P+ +T+T+L+  LC   R+  AA L  ++    C L+V T+N L++  C+
Sbjct: 440 FNSL--PC-EPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQ 496

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL---------GF 258
            G    A+ L ++M     E G  C P+ IT++T++DG+ ++  S   L         G 
Sbjct: 497 KGFVEEAIELVQQMM----EHG--CTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGI 550

Query: 259 S---------------------CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           S                      +  F A+  M      +R + +  N +  +  LCK  
Sbjct: 551 SLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMG-----MRPKAVMYNKI--LSALCKRC 603

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
           +   A + F  +     MPN  TY ILI GL  +G + E ++
Sbjct: 604 ETDRAIDFFAHMVSNSCMPNESTYVILIEGLAREGLLKEARY 645



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 20/237 (8%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           + N  P  P   ++  L   L   +  D    L   +       +  T+N+L++ FC+ G
Sbjct: 439 LFNSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKG 498

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V     ++ +++    TP+ +TF +L+  +  +    EA  L   L   G  LD  TY+
Sbjct: 499 FVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYS 558

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-F 258
           ++++ L R      A+ +F  + +     G+   P A+ Y+ I+  LCK   +   +  F
Sbjct: 559 SIVDVLSREDRIEEAVQMFHAVQD----MGM--RPKAVMYNKILSALCKRCETDRAIDFF 612

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           + M S S +   + Y             + LI+GL +   LK AR +   L   G++
Sbjct: 613 AHMVSNSCMPNESTY-------------VILIEGLAREGLLKEARYVLSELCSRGVL 656



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 286 FLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           +LC  LI  LC+  +   A  + ++   +G   +V  YN L+ G C  G++D  +     
Sbjct: 71  YLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAAR----- 125

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
               + + S  + PD YTY  LI   C  GRV     +   +L     P  VT+T L++ 
Sbjct: 126 ----RLIASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEA 181

Query: 404 LEINSFFRQV 413
           +  +S F Q 
Sbjct: 182 VCKSSGFGQA 191


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 135/318 (42%), Gaps = 28/318 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   +FN L     +T   D    LF ++ L G   D  +Y  LI  FC+ GR+     
Sbjct: 43  RPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVE 102

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           + G + +    PD   + +L+K LC   R  E   +  +++  G       Y  +++  C
Sbjct: 103 LFGEMDQ----PDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRC 158

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A  + +EM      F     P  +T + +I+  CKE   ++ L          
Sbjct: 159 WERKAKEAEEMLQEM------FEKGLAPCVVTCTAVINAYCKEGRMSDAL------RVLE 206

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L K+    P V        +  L+ G C   K+  A  L   +   G+ P+ VTYN+LIR
Sbjct: 207 LMKLRGCKPNV------WTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIR 260

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C DG      H E+ F L + +   GL  D YTYN LIN  CK GR      +F  + 
Sbjct: 261 GQCIDG------HIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLE 314

Query: 387 PSCFTPDAVTFTSLIKIL 404
                P+AVTF SLI  L
Sbjct: 315 TRGIKPNAVTFNSLINGL 332



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 151/334 (45%), Gaps = 25/334 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL V + M  +R  +P V ++N L             ++L  ++ + G+ PD  TYN+
Sbjct: 199 SDALRVLELM-KLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNL 257

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   C  G +   F +L  +       D  T+ +LI  LC + R  +A +LF  L   G
Sbjct: 258 LIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRG 317

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + +  T+N+LINGLC++G   +A    E+M +        C PD  TYS+ I+ LCK  
Sbjct: 318 IKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAG------CTPDTYTYSSFIEHLCKMK 371

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           GS   L F        L K         V+   +N+  +I  L K     +    +  + 
Sbjct: 372 GSQEGLSFIG----EMLQK--------DVKPSTVNYTIVIHKLLKERNYGLVARTWGEMV 419

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            +G  P+VVTY   +R  C +G+++E ++      +   ++  G+  D   YN L++   
Sbjct: 420 SSGCNPDVVTYTTSMRAYCIEGRLNEAEN------VLMEMSKNGVTVDTMAYNTLMDGHA 473

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            IG+      I  ++      P+  T+  L++ L
Sbjct: 474 SIGQTDHAVSILKQMTSVASVPNQFTYFILLRHL 507



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 146/336 (43%), Gaps = 33/336 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F  M      +P +  +  L   L K    +  L + +R+   G  P    Y  
Sbjct: 98  DEAVELFGEM-----DQPDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAA 152

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++  C   +      +L  +      P  VT T++I   C E R+ +A  +   +++ G
Sbjct: 153 VVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 212

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC--EPDAITYSTIIDGLCK 248
           C+ +V+TYN L+ G C  G    A+ L  +M         VC   PDA+TY+ +I G C 
Sbjct: 213 CKPNVWTYNALVQGFCNEGKVHKAMALLNKMR--------VCGVNPDAVTYNLLIRGQCI 264

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           +            ++F  L  M     L+  Q     +  LI+ LCK  +   A  LF S
Sbjct: 265 DG--------HIESAFRLLRLMEG-DGLIADQ---YTYNALINALCKDGRTDQACSLFDS 312

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   G+ PN VT+N LI GLC  G++D        +   +++ S G  PD YTY+  I  
Sbjct: 313 LETRGIKPNAVTFNSLINGLCKSGKVD------IAWKFLEKMVSAGCTPDTYTYSSFIEH 366

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            CK+     G    G +L     P  V +T +I  L
Sbjct: 367 LCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKL 402



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 146/336 (43%), Gaps = 18/336 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD  L  R  +P   +FN L   L K+   D      +++   G  PD YTY+ 
Sbjct: 304 DQACSLFDS-LETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSS 362

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I   CKM     G   +G +L+    P  V +T +I  L  E      A  + ++   G
Sbjct: 363 FIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSG 422

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  DV TY T +   C  G    A N+  EM+      GV    D + Y+T++DG     
Sbjct: 423 CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKN----GVTV--DTMAYNTLMDGHASIG 476

Query: 251 GSANFLG-FSCMASFSALNKMAFYFPLVRVQC---LCLNFLCLI-DGLCKISKLKIAREL 305
            + + +     M S +++     YF L+R      L  + L L   G+ K  +L     L
Sbjct: 477 QTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGL 536

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  + +   +PN  TY+ ++ G   DG+ +E     T  +   + +S  L  D+YT   L
Sbjct: 537 FDVMKKNEFLPNSGTYSSILEGFSEDGRTEEA----TSLVSLMKEDSISLNEDIYT--AL 590

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + CFCK  R    +V+   ++   F P  +++  L+
Sbjct: 591 VTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLL 626



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 156/353 (44%), Gaps = 56/353 (15%)

Query: 81  LNMRPSRPPVTSFNILFGCLA-KTKHYDTVLS-LFKRLNLTGLFPDRYTYNILINCFCKM 138
           L  RPS     +  + F C   K K  + +L  +F++    GL P   T   +IN +CK 
Sbjct: 141 LGWRPSTRAYAAV-VDFRCWERKAKEAEEMLQEMFEK----GLAPCVVTCTAVINAYCKE 195

Query: 139 GRVSHGFVVLGRI-LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFT 197
           GR+S    VL  + LR C  P+  T+ +L++  C E ++ +A AL  K+RV G   D  T
Sbjct: 196 GRMSDALRVLELMKLRGC-KPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVT 254

Query: 198 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
           YN LI G C  GH   A  L   M  G+G        D  TY+ +I+ LCK+  +     
Sbjct: 255 YNLLIRGQCIDGHIESAFRLLRLM-EGDGLIA-----DQYTYNALINALCKDGRTDQ--- 305

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
            +C + F +L           ++   + F  LI+GLCK  K+ IA +  + +  AG  P+
Sbjct: 306 -AC-SLFDSLETRG-------IKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPD 356

Query: 318 VVTYNILIRGLC-----NDG--------QMD----------------ETKHYETVFLLFK 348
             TY+  I  LC      +G        Q D                + ++Y  V   + 
Sbjct: 357 TYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWG 416

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + S+G  PD+ TY   +  +C  GR++    +   +  +  T D + + +L+
Sbjct: 417 EMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLM 469



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/344 (20%), Positives = 137/344 (39%), Gaps = 44/344 (12%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  +   F++  CK  G          E L     ML  +  +P   ++ I+   L K +
Sbjct: 356 DTYTYSSFIEHLCKMKG--------SQEGLSFIGEMLQ-KDVKPSTVNYTIVIHKLLKER 406

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
           +Y  V   +  +  +G  PD  TY   +  +C  GR++    VL  + ++  T D + + 
Sbjct: 407 NYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYN 466

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE----- 219
           +L+    +  +   A ++  ++       + FTY  L+  L R       L L       
Sbjct: 467 TLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWK 526

Query: 220 --EMANGNGEFGVVCE----PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
             E+ +  G F V+ +    P++ TYS+I++G  ++  +                     
Sbjct: 527 AIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSL--------------- 571

Query: 274 FPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
             L++   + LN   +  L+   CK  +   A  L  S+ + G +P++++Y  L+ GL  
Sbjct: 572 VSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLIC 631

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
           +GQ D+ K       +F         PD   + ++I+   K G 
Sbjct: 632 EGQTDKAKE------IFMNSRWKDYSPDEIVWKVIIDGLIKKGH 669



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 11/186 (5%)

Query: 63  GDITSITPNEALCVFDYMLNMR--PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG 120
           G   +I   +   +FD M      P+    +S    F    +T+   +++SL K  +++ 
Sbjct: 523 GVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSIS- 581

Query: 121 LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180
           L  D YT   L+ CFCK  R    +V++  +++  F P  +++  L+  L  E +  +A 
Sbjct: 582 LNEDIYT--ALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAK 639

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
            +F   R      D   +  +I+GL + GH+ ++  +   +   N      C P   TY+
Sbjct: 640 EIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMN------CRPSHQTYA 693

Query: 241 TIIDGL 246
            + + L
Sbjct: 694 MLTEEL 699



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 6/144 (4%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
           V  LF  +      P+  TY+ ++  F + GR      ++  +     + +   +T+L+ 
Sbjct: 533 VFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVT 592

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
             C   R ++A  L   +   G    + +Y  L++GL   G T  A  +F  M +   ++
Sbjct: 593 CFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIF--MNSRWKDY 650

Query: 229 GVVCEPDAITYSTIIDGLCKEAGS 252
                PD I +  IIDGL K+  S
Sbjct: 651 S----PDEIVWKVIIDGLIKKGHS 670


>gi|255661038|gb|ACU25688.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 375

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 151/328 (46%), Gaps = 29/328 (8%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + L  R     V SFNI+   L      D V+S+++ +   G   D  TY IL++  CK 
Sbjct: 48  WELMGRKGSRNVASFNIMMRGLFDNGEVDQVISIWELMIENGFGEDSITYGILVDGLCKN 107

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G  +    VL          DA +++++I  LC E+++ EA ++ + +   GC+ +   Y
Sbjct: 108 GYANKSLHVLEIAEGKGGVLDAFSYSAMINGLCKEAKLDEAVSVLSGMVKNGCKPNTHVY 167

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           N LING         A  +F EM       G  C P+ +TY+T+I+GLCK        G 
Sbjct: 168 NALINGFVGASKFEDATRVFREM-------GTHCSPNIVTYNTLINGLCK--------GE 212

Query: 259 SCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
               ++  + +M    + P V    L      L+ GLC   KL +A  L+  +   G  P
Sbjct: 213 RFGEAYDLVKEMLEKGWKPGVSTYSL------LMKGLCLGHKLDMAINLWNQVIAKGFKP 266

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           +V  +NILI GLC+ G+       +    L+  +N     P+L TYN L+  F K G + 
Sbjct: 267 DVQMHNILIHGLCSVGKT------QLALSLYFNMNXWNCAPNLVTYNTLMEGFYKDGDLR 320

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +   I+  IL +   PD +++   +K L
Sbjct: 321 NALAIWAHILRNGLQPDIISYNITLKGL 348



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 149/321 (46%), Gaps = 41/321 (12%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++  +    + PD   YN ++N + ++GR+ + F  L  ++    + +  +F  +
Sbjct: 7   DGAERVYNEMAENKVSPDAVVYNAMLNGYFRVGRIKNCFE-LWELMGRKGSRNVASFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L     + +  +++  +   G   D  TY  L++GLC+ G+   +L++  E+A G G
Sbjct: 66  MRGLFDNGEVDQVISIWELMIENGFGEDSITYGILVDGLCKNGYANKSLHVL-EIAEGKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAG-----------------------SANFLGFSCMAS 263
             GV+   DA +YS +I+GLCKEA                        +A   GF   + 
Sbjct: 125 --GVL---DAFSYSAMINGLCKEAKLDEAVSVLSGMVKNGCKPNTHVYNALINGFVGASK 179

Query: 264 FSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
           F    ++   F  +   C    + +  LI+GLCK  +   A +L + +   G  P V TY
Sbjct: 180 FEDATRV---FREMGTHCSPNIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWKPGVSTY 236

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           ++L++GLC   ++D          L+ ++ + G  PD+  +NILI+  C +G+      +
Sbjct: 237 SLLMKGLCLGHKLD------MAINLWNQVIAKGFKPDVQMHNILIHGLCSVGKTQLALSL 290

Query: 382 FGRILPSCFTPDAVTFTSLIK 402
           +  +      P+ VT+ +L++
Sbjct: 291 YFNMNXWNCAPNLVTYNTLME 311



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 55/259 (21%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ V   M+     +P    +N L         ++    +F+ +  T   P+  TYN 
Sbjct: 146 DEAVSVLSGMVK-NGCKPNTHVYNALINGFVGASKFEDATRVFREMG-THCSPNIVTYNT 203

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK  R    + ++  +L   + P   T++ L+K LC   ++  A  L+ ++   G
Sbjct: 204 LINGLCKGERFGEAYDLVKEMLEKGWKPGVSTYSLLMKGLCLGHKLDMAINLWNQVIAKG 263

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV  +N LI+GLC  G T +AL+L+  M   N      C P+ +TY+T+++G  K+ 
Sbjct: 264 FKPDVQMHNILIHGLCSVGKTQLALSLYFNMNXWN------CAPNLVTYNTLMEGFYKDG 317

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                                           L+ A  ++  + 
Sbjct: 318 -----------------------------------------------DLRNALAIWAHIL 330

Query: 311 RAGLMPNVVTYNILIRGLC 329
           R GL P++++YNI ++GLC
Sbjct: 331 RNGLQPDIISYNITLKGLC 349


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 160/351 (45%), Gaps = 33/351 (9%)

Query: 52  FLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
           +++  CK SG G        +A+ + D M N + S+P V ++N+L   + K    D  + 
Sbjct: 88  YVQTTCKESGVG--------QAMKLLDEMRN-KGSKPDVVTYNVLINGICKEGRLDEAIK 138

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
               +   G  P+  T+NI++   C  GR      +L  +LR   +P  VTF  LI  LC
Sbjct: 139 FLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLC 198

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
            +  +  A  +  K+ + GC  +  +YN L++G C+      A+   + M +        
Sbjct: 199 RQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG------ 252

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
           C PD +TY+T++  LCK+             +   LN+++          + + +  +ID
Sbjct: 253 CYPDIVTYNTLLTALCKDG--------KVDVAVEILNQLSSK----GCSPVLITYNTVID 300

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GL K+ K + A +L   + R GL P+++TY+ L+ GL  +G++DE   +      F  L 
Sbjct: 301 GLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKF------FHDLE 354

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             G+ P+  TYN ++   CK  +          ++     P   T+T LI+
Sbjct: 355 GLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIE 405



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 20/251 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FNIL   L +       + + +++ + G  P+  +YN L++ FCK  ++      
Sbjct: 185 PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 244

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  ++ R C+ PD VT+ +L+  LC + ++  A  +  +L   GC   + TYNT+I+GL 
Sbjct: 245 LDIMVSRGCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLS 303

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G T  A+ L +EM           +PD ITYS+++ GL +E      + F     F  
Sbjct: 304 KVGKTERAIKLLDEMRRKG------LKPDIITYSSLVSGLSREGKVDEAIKF-----FHD 352

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L  +      +R   +  N + L  GLCK  +   A +    +      P   TY ILI 
Sbjct: 353 LEGLG-----IRPNAITYNSIML--GLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIE 405

Query: 327 GLCNDGQMDET 337
           G+  +G   E 
Sbjct: 406 GIAYEGLAKEA 416



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK S +  A +L   +   G  P+VVTYN+LI G+C +G++DE   +         + S 
Sbjct: 93  CKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF------LNNMPSY 146

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G  P++ T+NI++   C  GR      +   +L    +P  VTF  LI  L
Sbjct: 147 GCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFL 197



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 60/142 (42%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
            L+ +   P + ++N +   L+K    +  + L   +   GL PD  TY+ L++   + G
Sbjct: 282 QLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREG 341

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           +V         +      P+A+T+ S++  LC   +   A      +    C+    TY 
Sbjct: 342 KVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYT 401

Query: 200 TLINGLCRTGHTIVALNLFEEM 221
            LI G+   G    AL+L  E+
Sbjct: 402 ILIEGIAYEGLAKEALDLLNEL 423


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 147/309 (47%), Gaps = 19/309 (6%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     ++   ++ + +   G  PD  TY+ +I   C   +V   F +   + R+  TP
Sbjct: 96  CLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITP 155

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T+L+   C    I +A   F +++  GC  +V TY  LI+   +T     A  +F
Sbjct: 156 DVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIF 215

Query: 219 EEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN--KMAFYFP 275
           E M +NG       C P+ +TY+ +IDG CK   +              ++   +  YF 
Sbjct: 216 EMMLSNG-------CVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFR 268

Query: 276 LVRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
           +V  +    N +    L+DGLCK  K+K AR+L +++   G  PN + Y+ LI G C  G
Sbjct: 269 IVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVG 328

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           ++DE +       +F ++   G  P++YTY+ LI+   K  R+     +  ++L +   P
Sbjct: 329 KLDEAQE------VFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAP 382

Query: 393 DAVTFTSLI 401
           + V +T ++
Sbjct: 383 NVVIYTEMV 391



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 134/321 (41%), Gaps = 31/321 (9%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
             P V ++  L   L K         L + ++L G  P++  Y+ LI+ FCK+G++    
Sbjct: 275 KEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQ 334

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            V  ++L    +P+  T++SLI  L  + R+  A  + TK+    C  +V  Y  +++GL
Sbjct: 335 EVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGL 394

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G T  A  L   M          C P+ +TY+ +IDG  K AG  +     C+    
Sbjct: 395 CKVGKTDEAYRLMLMMEEKG------CYPNVVTYTAMIDGFGK-AGRVD----RCLELLQ 443

Query: 266 ALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            +     A  F   RV         LI+  C    L  A +L + + +     ++  Y  
Sbjct: 444 LMTSKGCAPNFITYRV---------LINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRK 494

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +I G  ++        +     L   L+  G  P L  Y +LI+ F K GR+     +  
Sbjct: 495 VIEGFSHE--------FVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHE 546

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
             L S       T+ SLI+ L
Sbjct: 547 E-LSSFSAAYQNTYVSLIESL 566



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 112/260 (43%), Gaps = 37/260 (14%)

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           I   C+ P  + F SL+   C       A  L  K+ + G +     YN LI G+C T  
Sbjct: 3   ITEGCY-PSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 211 --TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
             ++  + L E   N   E GVV   + +        LC            C+  F    
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVL--NKVNVCNFTRCLC------------CIGKFEKA- 106

Query: 269 KMAFYFPLVRVQCLCLNFL-------CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
                + ++R + +   F+        +I  LC  SK++ A +LFQ + R G+ P+V TY
Sbjct: 107 -----YNVIR-EMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTY 160

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
             L+   C  G +++ +++      F  +   G  P++ TY  LI+ + K  ++S    I
Sbjct: 161 TTLLDRFCKVGLIEQARNW------FDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEI 214

Query: 382 FGRILPSCFTPDAVTFTSLI 401
           F  +L +   P+ VT+T+LI
Sbjct: 215 FEMMLSNGCVPNIVTYTALI 234



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 111/272 (40%), Gaps = 30/272 (11%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI--M 177
           G +P    +N L++ +C+ G   + + +L +++   + P  V +  LI  +C+   +  M
Sbjct: 6   GCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSM 65

Query: 178 EAAAL----FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
           E   L    + ++   G  L+          LC  G    A N+  EM +     G +  
Sbjct: 66  EVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSK----GFI-- 119

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
           PD+ TYS +I  LC  +             F  + +     P V        +  L+D  
Sbjct: 120 PDSSTYSKVIGYLCNASKVEKAFQL-----FQEMKRNGI-TPDV------YTYTTLLDRF 167

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK+  ++ AR  F  + + G  PNVVTY  LI       ++           +F+ + S 
Sbjct: 168 CKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANE------IFEMMLSN 221

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           G  P++ TY  LI+  CK G       I+ R+
Sbjct: 222 GCVPNIVTYTALIDGHCKAGETEKACQIYARM 253



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 131/333 (39%), Gaps = 48/333 (14%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +++    P    ++ L     K    D    +F ++   G  P+ YTY+ LI+   K  R
Sbjct: 305 MSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKR 364

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     VL ++L +   P+ V +T ++  LC   +  EA  L   +   GC  +V TY  
Sbjct: 365 LDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTA 424

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFL-- 256
           +I+G  + G     L L + M +        C P+ ITY  +I+  C       A+ L  
Sbjct: 425 MIDGFGKAGRVDRCLELLQLMTSKG------CAPNFITYRVLINHCCAAGLLDDAHKLLE 478

Query: 257 -------------------GFSC--MASFSALNKMAF--YFPLVRVQCLCLNFLCLIDGL 293
                              GFS   +AS   L +++     P++ V      +  LID  
Sbjct: 479 EMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSEDGSVPILPV------YKLLIDNF 532

Query: 294 CKISKLKIARELFQSLPR-AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
            K  +L++A EL + L   +    N  TY  LI  L    ++D+       F L+  +  
Sbjct: 533 IKAGRLEMALELHEELSSFSAAYQN--TYVSLIESLTLACKVDKA------FKLYSDMTR 584

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G  P+L     LI    ++G+      +   I
Sbjct: 585 RGFVPELSMLVCLIKGLLRVGKWEEALQLSDSI 617



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 93/233 (39%), Gaps = 27/233 (11%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  +   P V ++  +     K    D  L L + +   G  P+  TY +LIN  C  G
Sbjct: 409 MMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAG 468

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            +     +L  + ++ +      +  +I+    E   + +  L  +L   G    +  Y 
Sbjct: 469 LLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHE--FVASLGLLAELSEDGSVPILPVYK 526

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL---CKEAGSANFL 256
            LI+   + G   +AL L EE+++ +  +         TY ++I+ L   CK   +    
Sbjct: 527 LLIDNFIKAGRLEMALELHEELSSFSAAY-------QNTYVSLIESLTLACKVDKAFKL- 578

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                  +S + +  F   L  +       +CLI GL ++ K + A +L  S+
Sbjct: 579 -------YSDMTRRGFVPELSML-------VCLIKGLLRVGKWEEALQLSDSI 617



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/119 (21%), Positives = 48/119 (40%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  L+   C+      A +L + +   G  P  V YNILI G+C+   +   +       
Sbjct: 14  FNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEVIGLAER 73

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +  +   G+  +         C C IG+    + +   ++   F PD+ T++ +I  L
Sbjct: 74  AYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYL 132


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 156/338 (46%), Gaps = 41/338 (12%)

Query: 90  VTSFN-ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           V  FN ++ GCLA+ K  +    L++ + L G  PD +TY+IL++  CK+GR+     +L
Sbjct: 295 VVLFNTVIGGCLAEGKLAEAT-ELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLL 353

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
             + +  F P+ VT+T ++   C      +  AL  ++   G  L+   YN +I  LC+ 
Sbjct: 354 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKD 413

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----------------KEAGS 252
           G    A+ L +EM +        C PD  +Y+TII  LC                +E   
Sbjct: 414 GRMDEAMGLIQEMRSQG------CNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVV 467

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC---------LIDGLCKISKLKIAR 303
           AN + ++ +    AL +   +   VR+    +   C         LI  +CK   +  + 
Sbjct: 468 ANGITYNTI--IHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSL 525

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            L + +   G+ PN V+YNILI  LC +      +       L K++ + GL PD+ TYN
Sbjct: 526 VLLEEMAEKGIKPNNVSYNILISELCKE------RRVRDALELSKQMLNQGLAPDIVTYN 579

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            LIN  CK+G + +   +  ++      PD +T+  LI
Sbjct: 580 TLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILI 617



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 132/317 (41%), Gaps = 33/317 (10%)

Query: 88  PPVT-SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           PP T +F +    L +    D  L+L + +   G  PD   Y  +I+  C  G V+    
Sbjct: 156 PPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAAT 215

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +L      D  TF  +++ +C   R+ EAA L  ++   GC   V TY  L+ GLC
Sbjct: 216 LLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLC 275

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R            +        G V E + + ++T+I G              C+A    
Sbjct: 276 R----------VRQADEARAMLGRVPELNVVLFNTVIGG--------------CLAEGKL 311

Query: 267 LNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
                 Y    L   Q     +  L+ GLCK+ ++  A  L + + + G  PNVVTY I+
Sbjct: 312 AEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIV 371

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           +   C +G  D+T+       L + +++ GL  +   YN +I   CK GR+     +   
Sbjct: 372 LHSFCKNGMWDDTR------ALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQE 425

Query: 385 ILPSCFTPDAVTFTSLI 401
           +      PD  ++ ++I
Sbjct: 426 MRSQGCNPDICSYNTII 442



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 57/118 (48%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V S+N L   + K  + D  L L + +   G+ P+  +YNILI+  CK  RV     +  
Sbjct: 505 VVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSK 564

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           ++L     PD VT+ +LI  LC    +  A  L  KL       D+ TYN LI+  C+
Sbjct: 565 QMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCK 622



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 10/139 (7%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  S    +K  CK   +G++     + +L + + M   +  +P   S+NIL   L K +
Sbjct: 504 DVVSYNGLIKAMCK---DGNV-----DRSLVLLEEMAE-KGIKPNNVSYNILISELCKER 554

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
                L L K++   GL PD  TYN LIN  CKMG +     +L ++      PD +T+ 
Sbjct: 555 RVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYN 614

Query: 165 SLIKDLCAESRIMEAAALF 183
            LI   C + R+++ AA+ 
Sbjct: 615 ILISWHC-KVRLLDDAAML 632


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 145/324 (44%), Gaps = 28/324 (8%)

Query: 81  LNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           L MR  R  P   S N L   L+K    D     FK +   G+    +TYNI+I+  CK 
Sbjct: 209 LKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKE 268

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G +     +  ++  + FTPD VT+ SLI        + E   +F +++   C+ DV TY
Sbjct: 269 GDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITY 328

Query: 199 NTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
           N LIN  C+      A     EM ANG        +P+ +TYST ID  CKE      + 
Sbjct: 329 NALINCFCKFERMPKAFEFLHEMKANG-------LKPNVVTYSTFIDAFCKEGMLQEAIK 381

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
           F       AL    F             +  LID  CK   L  A +L + + +AG+  N
Sbjct: 382 FFVDMRRVALTPNEF------------TYTSLIDANCKAGNLAEALKLVEEILQAGIKLN 429

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           VVTY  L+ GLC +G+M E +       +F+ + + G+ P+  TY  L++ F K   +  
Sbjct: 430 VVTYTALLDGLCEEGRMKEAEE------VFRAMLNAGVAPNQETYTALVHGFIKAKEMEY 483

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
              I   +   C  PD + + +++
Sbjct: 484 AKDILKEMKEKCIKPDLLLYGTIL 507



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 145/316 (45%), Gaps = 28/316 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L     K    D  + +F+++      PD  TYN LINCFCK  R+   F  
Sbjct: 288 PDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEF 347

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +  +   P+ VT+++ I   C E  + EA   F  +R      + FTY +LI+  C+
Sbjct: 348 LHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCK 407

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFS 265
            G+   AL L EE+     +  VV      TY+ ++DGLC+E     A  +  + + +  
Sbjct: 408 AGNLAEALKLVEEILQAGIKLNVV------TYTALLDGLCEEGRMKEAEEVFRAMLNAGV 461

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           A N+                +  L+ G  K  +++ A+++ + +    + P+++ Y  ++
Sbjct: 462 APNQE--------------TYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 507

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLCN+ +++E K      LL   +  +G+  +   Y  L++ + K G+ +    +   +
Sbjct: 508 WGLCNESRLEEAK------LLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEM 561

Query: 386 LPSCFTPDAVTFTSLI 401
           L        VT+ +LI
Sbjct: 562 LDLGLIATEVTYCALI 577



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 143/315 (45%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +  V ++NI+   L K    +   SLF ++   G  PD  TYN LI+   K+G +     
Sbjct: 252 KRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECIC 311

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++  +   PD +T+ +LI   C   R+ +A     +++  G + +V TY+T I+  C
Sbjct: 312 IFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFC 371

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A+  F +M        V   P+  TY+++ID  CK    A  L          
Sbjct: 372 KEGMLQEAIKFFVDMRR------VALTPNEFTYTSLIDANCKAGNLAEAL---------- 415

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             K+        ++   + +  L+DGLC+  ++K A E+F+++  AG+ PN  TY  L+ 
Sbjct: 416 --KLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVH 473

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G     +M+  K       + K +    + PDL  Y  ++   C   R+    ++ G I 
Sbjct: 474 GFIKAKEMEYAKD------ILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIK 527

Query: 387 PSCFTPDAVTFTSLI 401
            S    +AV +T+L+
Sbjct: 528 ESGINTNAVIYTTLM 542



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 142/313 (45%), Gaps = 24/313 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++  L   L +         +F+ +   G+ P++ TY  L++ F K   + +   +L 
Sbjct: 430 VVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILK 489

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +   C  PD + + +++  LC ESR+ EA  L  +++  G   +   Y TL++   ++G
Sbjct: 490 EMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSG 549

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               AL L EEM +     G++     +TY  +IDGLCK       L    M  F  +++
Sbjct: 550 QATEALTLLEEMLD----LGLIATE--VTYCALIDGLCKSG-----LVQEAMHHFGRMSE 598

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           +    P V V      +  L+DGLCK +  ++A++LF  +   G+MP+ + Y  LI G  
Sbjct: 599 IGLQ-PNVAV------YTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNM 651

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
             G + E  +      L  R+   G+  DL+ Y  LI      G+V     +   ++   
Sbjct: 652 KHGNLQEALN------LRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKG 705

Query: 390 FTPDAVTFTSLIK 402
             PD V +  LIK
Sbjct: 706 VLPDEVVYMCLIK 718



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 140/328 (42%), Gaps = 26/328 (7%)

Query: 76  VFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
            F+++  M+ +  +P V +++       K       +  F  +    L P+ +TY  LI+
Sbjct: 344 AFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLID 403

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK G ++    ++  IL++    + VT+T+L+  LC E R+ EA  +F  +   G   
Sbjct: 404 ANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAP 463

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           +  TY  L++G  +      A ++ +EM           +PD + Y TI+ GLC E+   
Sbjct: 464 NQETYTALVHGFIKAKEMEYAKDILKEMKEK------CIKPDLLLYGTILWGLCNESRLE 517

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
                      S +N  A  +              L+D   K  +   A  L + +   G
Sbjct: 518 EAKLLIGEIKESGINTNAVIYT------------TLMDAYFKSGQATEALTLLEEMLDLG 565

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           L+   VTY  LI GLC  G + E  H+      F R++  GL P++  Y  L++  CK  
Sbjct: 566 LIATEVTYCALIDGLCKSGLVQEAMHH------FGRMSEIGLQPNVAVYTALVDGLCKNN 619

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                  +F  +L     PD + +T+LI
Sbjct: 620 CFEVAKKLFDEMLDKGMMPDKIAYTALI 647


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 144/305 (47%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+         +   S   L     
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYV 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 129/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG------LKPDKITYTTLIDGSCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------HLETAFEYRKRMI----KENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLLKEMQRDGYVPSVVT 418



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 139/315 (44%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R P  +   +   L K K++  V   ++     G     Y +NIL++ F K G +     
Sbjct: 98  RVPFDTXRKVIEHLMKLKYFKLVWGFYEESLEYGYPASLYFFNILMHSFVKEGEIRLAQS 157

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   I +    P  V+F +L+        + E   L   ++  G + DV+TY+ LINGLC
Sbjct: 158 VFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLC 217

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      A  LF+EM N     G+V  P+ +T++T+IDG CK  G  +      M  +  
Sbjct: 218 KESKMEDANELFDEMLNN----GLV--PNGVTFTTLIDGHCKN-GRVDL----AMEIYKQ 266

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +   +    L+        +  LI GLCK   LK A++L   +   GL P+ +TY  LI 
Sbjct: 267 MLSQSLSPDLI-------TYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLID 319

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C +G      H ET F   KR+    +  D   Y  LI+  C+ GR      +   +L
Sbjct: 320 GSCKEG------HLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREML 373

Query: 387 PSCFTPDAVTFTSLI 401
                P+  T+T +I
Sbjct: 374 SVGLKPEIGTYTMII 388


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 141/319 (44%), Gaps = 34/319 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++NIL    ++    D  L LFK L+  G  P+  TY  +I       R+      
Sbjct: 297 PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAF 356

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
               L      D +++T++IK L    RI EA  LF KL+  GC  +V  Y  +I+GL +
Sbjct: 357 FDEAL------DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLK 410

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G     L  FE+M+      G  C P   TY+ +IDGLCK    A  L  +C       
Sbjct: 411 AGRIEDGLKNFEDMS------GSSCVPTRTTYTVVIDGLCK----AQMLPDAC------- 453

Query: 268 NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                +  +V+  C+   + +  LIDG  K SK+  AR+L   +   G  P  VTY  ++
Sbjct: 454 ---KVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIV 510

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C    ++E K       +  ++   G  P L+ +  L++ +   GR    + +   +
Sbjct: 511 HGFCKLDMINEAKE------VIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEM 564

Query: 386 LPSCFTPDAVTFTSLIKIL 404
                 PD + +TSLI +L
Sbjct: 565 TARGCAPDVILYTSLIDLL 583



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 148/331 (44%), Gaps = 26/331 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  VF+ M+  +   P   ++  L    +K    D    L   +   G  P   TY  +
Sbjct: 451 DACKVFEQMVQ-KGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSI 509

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ FCK+  ++    V+ ++      P    FTSL+    ++ R  EA  + T++   GC
Sbjct: 510 VHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGC 569

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV  Y +LI+ L  TG    A ++F+ M          C PDA+TY TII        
Sbjct: 570 APDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG------CAPDALTYGTIIQ------- 616

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                 FS + +  A  ++        V   C  +  L+DG  K+ ++  A  ++  +  
Sbjct: 617 -----NFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVA 671

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR-LNSTGLFPDLYTYNILINCFC 370
           +G+ PN VT+N+L+ GL  DG+ D        F LFK  L    + P L +Y ILI+   
Sbjct: 672 SGIKPNAVTFNVLMHGLFKDGKTDRA------FSLFKEMLEKDEVPPTLVSYTILIDGLG 725

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K GRVS  F  F  ++     P+  T+TSLI
Sbjct: 726 KAGRVSEAFSQFQEMIDRGIIPECHTYTSLI 756



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 152/359 (42%), Gaps = 46/359 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA   FD  L+       V S+  +   LA +K  D    LF++L   G  P+   Y  
Sbjct: 351 EEAKAFFDEALD-------VISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTA 403

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+   K GR+  G      +  S   P   T+T +I  LC    + +A  +F ++   G
Sbjct: 404 VIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKG 463

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
           C  D  TY TLI+G  +      A  L + M           EP A+TY +I+ G CK  
Sbjct: 464 CVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGP------EPTAVTYGSIVHGFCKLD 517

Query: 249 ---EAGS--ANFLGFSCMAS---FSALNKMAFYFPLVRVQ-------------CL--CLN 285
              EA    A      C      F++L  +++Y    R +             C    + 
Sbjct: 518 MINEAKEVIAQMRERGCEPGLFIFTSL--LSYYLSKGRAEEAYQVLTEMTARGCAPDVIL 575

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  LID L    ++  AR +F S+   G  P+ +TY  +I+     G +      E    
Sbjct: 576 YTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNV------EAAGE 629

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + + +  +G+ PD + YN L++ + K+ RV   F ++ R++ S   P+AVTF  L+  L
Sbjct: 630 ILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGL 688



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 143/334 (42%), Gaps = 32/334 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P + S+N +   LA     D     F  +   G  PD   +  LI+ FCK G+   G +
Sbjct: 52  EPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHM 111

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L + L+  F PD   +TS+I   C    +     +  ++   GC  D   Y  LI+ LC
Sbjct: 112 LLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLC 170

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A  LFE M          C  D +T+ T+I+ L         L  +C      
Sbjct: 171 KLGRVDEAYELFERMRKSG------CLGDYVTFMTLIEALSNHGK----LDEACELYREM 220

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           + +   Y P + VQ        LI  LCK  K+  A E++Q++    +  + V YN L+ 
Sbjct: 221 IER--GYEPYLEVQD------SLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMD 272

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C  G++D+         L  ++     FPD+ TYNIL+  F +  R+     +F  + 
Sbjct: 273 GYCKLGRVDDG------LKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLS 326

Query: 387 PSCFTPDAVTFTSLIKIL-------EINSFFRQV 413
                P+A T+T++I+ L       E  +FF + 
Sbjct: 327 SYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEA 360



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 159/380 (41%), Gaps = 54/380 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA   F+ M++     P V +F  L     K      V  +     L    PD + Y  
Sbjct: 72  DEAYKFFNSMID-NGCEPDVIAFTTLIHGFCKAGQ-PQVGHMLLNQALKRFRPDVFLYTS 129

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+ +CK G +  GF +L  +L +   PDA  +  LI  LC   R+ EA  LF ++R  G
Sbjct: 130 VIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSG 189

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
           C  D  T+ TLI  L   G    A  L+ EM     E G   EP      ++I  LCK  
Sbjct: 190 CLGDYVTFMTLIEALSNHGKLDEACELYREMI----ERGY--EPYLEVQDSLIFALCKAG 243

Query: 249 EAGSANFLGFSCMASFSALNKMAF------YFPLVRVQ---------CLCLNFL------ 287
           +   AN +  + +A   A +++A+      Y  L RV            C NF       
Sbjct: 244 KVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYN 303

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK--------- 338
            L+ G  + ++L  A ELF+ L   G  PN  TY  +I+GL +  +M+E K         
Sbjct: 304 ILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDV 363

Query: 339 -HYETVFL-------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
             Y TV               LF++L + G  P++  Y  +I+   K GR+  G   F  
Sbjct: 364 ISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFED 423

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           +  S   P   T+T +I  L
Sbjct: 424 MSGSSCVPTRTTYTVVIDGL 443



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 131/298 (43%), Gaps = 31/298 (10%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           +  L   K ++ TGL PD    NI++N  CK  ++     +   +      P  V++ ++
Sbjct: 2   EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTV 61

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           I  L +  ++ EA   F  +   GCE DV  + TLI+G C+ G   V   L  +      
Sbjct: 62  ISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALK--- 118

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA---LNKMAFYFPLVRVQCLC 283
            F     PD   Y+++I G CK AG  +  GF  +    A   +   A YF         
Sbjct: 119 RF----RPDVFLYTSVIHGYCK-AGDLD-TGFKILEEMLAAGCIPDAAAYF--------- 163

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
                LID LCK+ ++  A ELF+ + ++G + + VT+  LI  L N G++DE       
Sbjct: 164 ----VLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACE---- 215

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             L++ +   G  P L   + LI   CK G+V     I+  ++        V + SL+
Sbjct: 216 --LYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLM 271



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 145/359 (40%), Gaps = 47/359 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + D ML   P    VT  +I+ G   K    +    +  ++   G  P  + +  
Sbjct: 485 DEARKLLDVMLTKGPEPTAVTYGSIVHG-FCKLDMINEAKEVIAQMRERGCEPGLFIFTS 543

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +   GR    + VL  +      PD + +TSLI  L +  R+ EA  +F  +   G
Sbjct: 544 LLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 603

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANG----------------------NGEF 228
           C  D  TY T+I    + G+   A  + E MA                        +  F
Sbjct: 604 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 663

Query: 229 GVV-------CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
           GV         +P+A+T++ ++ GL K+  +          +FS   +M        V  
Sbjct: 664 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDR--------AFSLFKEM---LEKDEVPP 712

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             +++  LIDGL K  ++  A   FQ +   G++P   TY  LI  L   G++ E K   
Sbjct: 713 TLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKK-- 770

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
               L + +   G+ PD+  Y+ LI        V + + +F  ++     P+ VT+  L
Sbjct: 771 ----LVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 825



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 129/295 (43%), Gaps = 23/295 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P V  +  L   L  T        +F  +   G  PD  TY  +I  F K+G 
Sbjct: 564 MTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGN 623

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V     +L  + +S   PD   + SL+       R+ +A  ++ ++   G + +  T+N 
Sbjct: 624 VEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNV 683

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           L++GL + G T  A +LF+EM   +        P  ++Y+ +IDGL K AG  +      
Sbjct: 684 LMHGLFKDGKTDRAFSLFKEMLEKDE-----VPPTLVSYTILIDGLGK-AGRVS------ 731

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             +FS   +M     +      C  +  LI  L K  ++  A++L + + + G+ P+V  
Sbjct: 732 -EAFSQFQEMIDRGIIPE----CHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQA 786

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           Y+ LI GL +   +D      T + +F+ +   G  P+  TY +L   F   GR 
Sbjct: 787 YSALITGLIDSSMVD------TAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRA 835



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 33/231 (14%)

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           EA     ++   G   DV   N ++NGLC+      A+ LF EM +      + CEP  +
Sbjct: 3   EALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPS------MGCEPTIV 56

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKM-AFYFPLVRVQCL--CLNFLCLIDGLC 294
           +Y+T+I GL               AS   +++   F+  ++   C    + F  LI G C
Sbjct: 57  SYNTVISGL---------------ASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFC 101

Query: 295 KISKLKIARELF-QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           K  + ++   L  Q+L R    P+V  Y  +I G C  G +D      T F + + + + 
Sbjct: 102 KAGQPQVGHMLLNQALKR--FRPDVFLYTSVIHGYCKAGDLD------TGFKILEEMLAA 153

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G  PD   Y +LI+  CK+GRV   + +F R+  S    D VTF +LI+ L
Sbjct: 154 GCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEAL 204



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 60/142 (42%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  +F  ML      P + S+ IL   L K        S F+ +   G+ P+ +TY  
Sbjct: 695 DRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTS 754

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI    K GR+     ++  +++    PD   +++LI  L   S +  A  +F ++   G
Sbjct: 755 LIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRG 814

Query: 191 CELDVFTYNTLINGLCRTGHTI 212
           C  +  TY  L  G    G  +
Sbjct: 815 CAPNEVTYKVLRRGFRAAGRAL 836


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 148/328 (45%), Gaps = 29/328 (8%)

Query: 78  DYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           D +L MR    P  V + N +     +T  +     +F  +   G+ PD  ++  L+   
Sbjct: 124 DMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVC 183

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G+V     +L  + R  F+ D  T T +++ LC + R  + +  F ++   G   +V
Sbjct: 184 CREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNV 243

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             Y   I+GLC+  +   A ++ EEM  G G      +P+  T++T+IDGLCK       
Sbjct: 244 VNYTAWIDGLCKRRYVKQAFHVLEEMV-GRG-----LKPNVYTHTTLIDGLCK------- 290

Query: 256 LGFSCMA--SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
           +G++  A   F  L K + Y P V        +  +I G C+  KL  A  L   +   G
Sbjct: 291 IGWTERAFRLFLKLIKSSSYKPNVH------TYTVMIGGYCREGKLARAEMLLVRMVEQG 344

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           L PN  TY  LI G C  G  D        F L  ++   G  P++YTYN +I+ FCK G
Sbjct: 345 LKPNTNTYTTLIGGHCKGGSFDR------AFELMNKMKQEGFLPNIYTYNAVIDGFCKKG 398

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++   + +           D +T+T LI
Sbjct: 399 KIQEAYKVLRMATSQGLKFDKITYTILI 426



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 140/317 (44%), Gaps = 27/317 (8%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           F  ML M  + P V ++      L K ++      + + +   GL P+ YT+  LI+  C
Sbjct: 231 FRRMLEM-GTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLC 289

Query: 137 KMGRVSHGFVVLGRILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           K+G     F +  ++++S  + P+  T+T +I   C E ++  A  L  ++   G + + 
Sbjct: 290 KIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNT 349

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            TY TLI G C+ G    A  L  +M     + G +  P+  TY+ +IDG CK+      
Sbjct: 350 NTYTTLIGGHCKGGSFDRAFELMNKMK----QEGFL--PNIYTYNAVIDGFCKKGKIQEA 403

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                MA+   L      F  +        +  LI   CK   +  A +LF  +   G  
Sbjct: 404 YKVLRMATSQGLK-----FDKI-------TYTILITEHCKQGHITYALDLFDRMVENGCC 451

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P++  Y  LI   C   QM+E++ +      F +    GL P   TY  +I  +CK+GR 
Sbjct: 452 PDIEAYTSLISTYCQQRQMEESQKF------FDKCLMIGLLPTKQTYTSMIAGYCKVGRS 505

Query: 376 SSGFVIFGRILPS-CFT 391
           +    +F R++ + CF 
Sbjct: 506 TMALRVFERMVQNGCFA 522



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 29/255 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++ ++ G   +         L  R+   GL P+  TY  LI   CK G     F 
Sbjct: 311 KPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFE 370

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++ ++ +  F P+  T+ ++I   C + +I EA  +       G + D  TY  LI   C
Sbjct: 371 LMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHC 430

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF--SCMASF 264
           + GH   AL+LF+ M   NG     C PD   Y+++I   C++        F   C+   
Sbjct: 431 KQGHITYALDLFDRMVE-NG-----CCPDIEAYTSLISTYCQQRQMEESQKFFDKCL--- 481

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
                M    P  +       +  +I G CK+ +  +A  +F+ + + G   + +     
Sbjct: 482 -----MIGLLPTKQ------TYTSMIAGYCKVGRSTMALRVFERMVQNGCFADSIL---- 526

Query: 325 IRGLCNDGQMDETKH 339
              +C++  +  T+H
Sbjct: 527 ---MCSNNVVSATRH 538



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 46/257 (17%)

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
            R+ EAA +  ++R  G  L V T N ++     TG  + A  +F+ M         VC 
Sbjct: 117 GRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG-----VC- 170

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP----LVRVQCLC------ 283
           PD  ++  ++   C+E            A  +A+ +  F        V V+ LC      
Sbjct: 171 PDERSFRALVVVCCREGKVEEV-----DALLAAMWRYGFSLDNATCTVVVRSLCEKGRFK 225

Query: 284 ------------------LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                             +N+   IDGLCK   +K A  + + +   GL PNV T+  LI
Sbjct: 226 DVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLI 285

Query: 326 RGLCNDGQMDETKHYETVFLLF-KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
            GLC  G        E  F LF K + S+   P+++TY ++I  +C+ G+++   ++  R
Sbjct: 286 DGLCKIGWT------ERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVR 339

Query: 385 ILPSCFTPDAVTFTSLI 401
           ++     P+  T+T+LI
Sbjct: 340 MVEQGLKPNTNTYTTLI 356


>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
          Length = 514

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 153/318 (48%), Gaps = 27/318 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGL--FPDRYTYNILINCFCKMGRVSHG 144
           P +  FN +   +AK + YD V++L+KR+ N  G+   PD YT NIL+NCFC+  + S  
Sbjct: 83  PSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSA 142

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
              LG++++    PD VT +SL+   C  + I +A  +  ++   G + DV     LI+ 
Sbjct: 143 LSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDT 202

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           LC+    + AL + + M +          P+ +TYS++I GLCK    A+        + 
Sbjct: 203 LCKNRLVVPALEVLKRMKDRG------ISPNVVTYSSLITGLCKSGRLAD--------AE 248

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             L++M       ++    + F  LID   K  KL     +++ + +  + PNV TY+ L
Sbjct: 249 RRLHEM----DSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSL 304

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I GLC   ++DE         +   + S G  P++ TY+ L N F K  RV  G  +   
Sbjct: 305 IYGLCMHNRVDEA------IKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDD 358

Query: 385 ILPSCFTPDAVTFTSLIK 402
           +       + V+  +LIK
Sbjct: 359 MPQRGVAANTVSCNTLIK 376



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 115/276 (41%), Gaps = 18/276 (6%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + ++ +   P V +F+ L    AK      V S++K +    + P+ +TY+ LI   C  
Sbjct: 252 HEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMH 311

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
            RV     +L  ++    TP+ VT+++L       SR+ +   L   +   G   +  + 
Sbjct: 312 NRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSC 371

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           NTLI G  + G   +AL +F  M +     G++  P+  +Y+ ++ GL      AN    
Sbjct: 372 NTLIKGYFQAGKIDLALGVFGYMTSN----GLI--PNIRSYNIVLAGLF-----ANGEVE 420

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
             ++ F  + K        R     + +  +I G+CK   +K A +LF  L    + P+ 
Sbjct: 421 KALSRFEHMQK-------TRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLKFKRVEPDF 473

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
             Y I+I  L   G   E       +    R N + 
Sbjct: 474 KAYTIMIAELNRAGMRTEADALNRFYQKHVRQNESA 509



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL VF YM +     P + S+NI+   L      +  LS F+ +  T    D  TY I+I
Sbjct: 387 ALGVFGYMTS-NGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMI 445

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           +  CK   V   + +  ++      PD   +T +I +L       EA AL
Sbjct: 446 HGMCKACMVKEAYDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEADAL 495


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 149/330 (45%), Gaps = 25/330 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA   F  M N R + P   S N L   L+K+ +   V   F  +   G+ P  +TYN++
Sbjct: 237 EANECFSRMRNFR-TLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVM 295

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK G + +   +  ++     +PD VT+ SLI        + E A+LF +++  GC
Sbjct: 296 IDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGC 355

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+ TYN LIN  C+      A   F EM N NG      +P+ +TYST+ID  CKE  
Sbjct: 356 VPDIITYNGLINCYCKFEKMPRAFEYFSEMKN-NG-----LKPNVVTYSTLIDAFCKEGM 409

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
               +        + L    F             +  LID  CK   L  A +L   + +
Sbjct: 410 MQGAIKLFVDMRRTGLLPNEF------------TYTSLIDANCKAGNLTEAWKLLNDMLQ 457

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           AG+  N+VTY  L+ GLC  G+M E +       +F+ +   G+ P+   Y  L++ + K
Sbjct: 458 AGVKLNIVTYTALLDGLCKAGRMIEAEE------VFRSMLKDGISPNQQVYTALVHGYIK 511

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             R+     I  ++      PD + + S+I
Sbjct: 512 AERMEDAMKILKQMTECNIKPDLILYGSII 541



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 156/353 (44%), Gaps = 43/353 (12%)

Query: 77  FDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           F+Y   M+ +  +P V +++ L     K       + LF  +  TGL P+ +TY  LI+ 
Sbjct: 379 FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDA 438

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            CK G ++  + +L  +L++    + VT+T+L+  LC   R++EA  +F  +   G   +
Sbjct: 439 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 498

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG--- 251
              Y  L++G  +      A+ + ++M   N       +PD I Y +II G C +     
Sbjct: 499 QQVYTALVHGYIKAERMEDAMKILKQMTECN------IKPDLILYGSIIWGHCSQRKLEE 552

Query: 252 -------------SANFL--------GFSCMASFSALNKMAFYFPL--VRVQCLCLNFLC 288
                        SAN +         F    S  ALN   F+  +  V V+   + +  
Sbjct: 553 TKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALN---FFQEMQDVGVEATIVTYCV 609

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LIDGLCK   +++A + F  +   GL PNV  Y  LI GLC +  ++  K       LF 
Sbjct: 610 LIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKK------LFD 663

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   G+ PD+  +  LI+   K G +    V+  R+       D   +TSL+
Sbjct: 664 EMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLV 716



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 144/343 (41%), Gaps = 47/343 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L     K    + V SLF  +   G  PD  TYN LINC+CK  ++   F  
Sbjct: 322 PDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEY 381

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +  +   P+ VT+++LI   C E  +  A  LF  +R  G   + FTY +LI+  C+
Sbjct: 382 FSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCK 441

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+   A  L  +M     +  +V      TY+ ++DGLCK AG            F ++
Sbjct: 442 AGNLTEAWKLLNDMLQAGVKLNIV------TYTALLDGLCK-AGRM----IEAEEVFRSM 490

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K     P  +V      +  L+ G  K  +++ A ++ + +    + P+++ Y  +I G
Sbjct: 491 LKDGIS-PNQQV------YTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 543

Query: 328 LCNDGQMDETK-----------------------------HYETVFLLFKRLNSTGLFPD 358
            C+  +++ETK                                     F+ +   G+   
Sbjct: 544 HCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEAT 603

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + TY +LI+  CK G V      F R+L     P+   +TSLI
Sbjct: 604 IVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLI 646



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 131/296 (44%), Gaps = 35/296 (11%)

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
            +++L + F ++G +        R+      P A +   L+  L            F  +
Sbjct: 221 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDM 280

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G    VFTYN +I+ LC+ G    +  LF +M     E G+   PD +TY+++IDG 
Sbjct: 281 IGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMR----EMGL--SPDVVTYNSLIDGY 334

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARE 304
            K  GS   +        S  N+M        V C+   + +  LI+  CK  K+  A E
Sbjct: 335 GK-VGSLEEVA-------SLFNEMK------DVGCVPDIITYNGLINCYCKFEKMPRAFE 380

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
            F  +   GL PNVVTY+ LI   C +G M      +    LF  +  TGL P+ +TY  
Sbjct: 381 YFSEMKNNGLKPNVVTYSTLIDAFCKEGMM------QGAIKLFVDMRRTGLLPNEFTYTS 434

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           LI+  CK G ++  + +   +L +    + VT+T+L+       +++E    FR +
Sbjct: 435 LIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSM 490



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 119/289 (41%), Gaps = 30/289 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  VF  ML    S P    +  L     K +  +  + + K++    + PD   Y  +
Sbjct: 482 EAEEVFRSMLKDGIS-PNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSI 540

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I   C   ++    ++L  +     + + V  T++I       +  +A   F +++  G 
Sbjct: 541 IWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGV 600

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--- 248
           E  + TY  LI+GLC+ G   +A++ F  M        +  +P+   Y+++IDGLCK   
Sbjct: 601 EATIVTYCVLIDGLCKAGIVELAVDYFCRM------LSLGLQPNVAVYTSLIDGLCKNNC 654

Query: 249 -EAGSANFLGFSC------MASFSAL--------NKMAFYFPLVRVQCLCLNF-----LC 288
            E+    F    C      + +F+AL        N       + R+  L + F       
Sbjct: 655 IESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTS 714

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           L+ G  +  +L  AR+ F  +   G++P  V    L+R     GQ+DE 
Sbjct: 715 LVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEA 763



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 101/251 (40%), Gaps = 23/251 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           E   + + M +   S  PV S  I+       K  D  L+ F+ +   G+     TY +L
Sbjct: 552 ETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDA-LNFFQEMQDVGVEATIVTYCVL 610

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK G V        R+L     P+   +TSLI  LC  + I  A  LF +++  G 
Sbjct: 611 IDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGM 670

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--CKE 249
             D+  +  LI+G  + G+   AL L   M     EF      D   Y++++ G   C E
Sbjct: 671 TPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEF------DLHVYTSLVSGFSQCGE 724

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              A    F+ M     L +          + LC   +CL+    K  +L  A EL   +
Sbjct: 725 LHQARKF-FNEMIEKGILPE----------EVLC---ICLLREYYKRGQLDEAIELKNEM 770

Query: 310 PRAGLMPNVVT 320
            R GL+    T
Sbjct: 771 ERMGLITESAT 781


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 144/305 (47%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+         +   S   L     
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYA 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 130/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K  + D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG------LKPDKITYTTLIDGSCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------HLETAFEYRKRMI----KENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLLKEMQRDGYAPSVVT 418



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 139/315 (44%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R P  +   +   L K K++  V   ++     G     Y +NIL++ F K G +     
Sbjct: 98  RVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQS 157

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   I +    P  V+F +L+        + E   L   ++  G + DV+TY+ LINGLC
Sbjct: 158 VFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLC 217

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      A  LF+EM +     G+V  P+ +T++T+IDG CK  G  +      M  +  
Sbjct: 218 KESKMDDANELFDEMLDN----GLV--PNGVTFTTLIDGHCKN-GRVDL----AMEIYKQ 266

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +   +    L+        +  LI GLCK   LK A++L   +   GL P+ +TY  LI 
Sbjct: 267 MLSQSLSPDLI-------TYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLID 319

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C +G      H ET F   KR+    +  D   Y  LI+  C+ GR      +   +L
Sbjct: 320 GSCKEG------HLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREML 373

Query: 387 PSCFTPDAVTFTSLI 401
                P+  T+T +I
Sbjct: 374 SVGLKPEIGTYTMII 388


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 151/326 (46%), Gaps = 25/326 (7%)

Query: 78   DYMLNMRPSRPPVTS--FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
            D +L+MR     +T+   N +    A+ +  +   ++F  ++  G++PD  TY  +I  +
Sbjct: 782  DMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGY 841

Query: 136  CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            C+ G V      +  ++   F  D  T T +I   C +S +  A   F K+   G   ++
Sbjct: 842  CRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNL 901

Query: 196  FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
              Y+++I+GLC+ G    A  L EEM   NG      +P+  T++++I GLCK+  +   
Sbjct: 902  INYSSMISGLCKRGSVKQAFELLEEMVK-NG-----WKPNVYTHTSLIHGLCKKGWTERA 955

Query: 256  LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                    F  L +   Y P V        +  +I G CK  KL  A  LF+ +   GL+
Sbjct: 956  FRL-----FLKLIRSDNYKPNVHT------YTAMISGYCKEEKLSRAEMLFERMKEQGLV 1004

Query: 316  PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            PN  TY  LI G C  G    +K YE    L + +++ G FP+  TYN +++  CK GR 
Sbjct: 1005 PNTNTYTTLIDGHCKAGNF--SKAYE----LMELMSNEGFFPNTCTYNSIVDGLCKRGRA 1058

Query: 376  SSGFVIFGRILPSCFTPDAVTFTSLI 401
               F +      +    D VT+T LI
Sbjct: 1059 EEAFKLLNTGFQNQIEADGVTYTILI 1084



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 151/335 (45%), Gaps = 26/335 (7%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            N A+  F  +  M  S P + +++ +   L K         L + +   G  P+ YT+  
Sbjct: 883  NRAVWFFHKVTKMGLS-PNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTS 941

Query: 131  LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI+  CK G     F +  +++RS  + P+  T+T++I   C E ++  A  LF +++  
Sbjct: 942  LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQ 1001

Query: 190  GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            G   +  TY TLI+G C+ G+   A  L E M+N  G F     P+  TY++I+DGLCK 
Sbjct: 1002 GLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSN-EGFF-----PNTCTYNSIVDGLCKR 1055

Query: 250  AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              +          +F  LN   F     +++   + +  LI   CK + +  A      +
Sbjct: 1056 GRAEE--------AFKLLN-TGFQ---NQIEADGVTYTILISEQCKRADMNQALVFLNKM 1103

Query: 310  PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             + G  P++  Y  LI   C    M +++       LF  +   GL P   TY  +I  +
Sbjct: 1104 FKVGFQPDIHLYTTLIAAFCRQNMMKDSEK------LFDEVIKLGLAPTKETYTSMICGY 1157

Query: 370  CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            C+  +VS     F ++      PD++++ +LI  L
Sbjct: 1158 CREKKVSLAVKFFQKMSDHGCAPDSISYGALISGL 1192



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 138/314 (43%), Gaps = 31/314 (9%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P   ++  L     K  ++     L + ++  G FP+  TYN +++  CK GR    F +
Sbjct: 1005 PNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKL 1064

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            L    ++    D VT+T LI + C  + + +A     K+   G + D+  Y TLI   CR
Sbjct: 1065 LNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCR 1124

Query: 208  TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                  +  LF+E+     + G+   P   TY+++I G C+E   +  + F         
Sbjct: 1125 QNMMKDSEKLFDEVI----KLGLA--PTKETYTSMICGYCREKKVSLAVKF--------F 1170

Query: 268  NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             KM+ +       C    +++  LI GLCK S+L  AR+L+ ++   GL P  VT   L 
Sbjct: 1171 QKMSDH------GCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLT 1224

Query: 326  RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
               C      +T+ + +  ++ +RLN       ++T   LI   C   +V+   + F ++
Sbjct: 1225 YEYC------KTEDFASAMVILERLNKKLWIRTVHT---LIRKLCCEKKVALAALFFHKL 1275

Query: 386  LPSCFTPDAVTFTS 399
            L      D VT  +
Sbjct: 1276 LDKEVNVDRVTLAA 1289



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 64/181 (35%)

Query: 288 CLIDGLCKISKLKIAREL-----------------------------------FQSLPRA 312
           C++    +I KLK A ++                                   F  +   
Sbjct: 766 CMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSAR 825

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHY-----ETVFLL--------------------- 346
           G+ P+  TY  +I G C +G + E   +     E  F++                     
Sbjct: 826 GVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRA 885

Query: 347 ---FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
              F ++   GL P+L  Y+ +I+  CK G V   F +   ++ + + P+  T TSLI  
Sbjct: 886 VWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHG 945

Query: 404 L 404
           L
Sbjct: 946 L 946


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 149/331 (45%), Gaps = 25/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA   F  M N R + P   S N L   L+K+ +   V   F  +   G+ P  +TYN+
Sbjct: 177 EEANECFSRMRNFR-TLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNV 235

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK G + +   +  ++     +PD VT+ SLI        + E A+LF +++  G
Sbjct: 236 MIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVG 295

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  D+ TYN LIN  C+      A   F EM N NG      +P+ +TYST+ID  CKE 
Sbjct: 296 CVPDIITYNGLINCYCKFEKMPRAFEYFSEMKN-NG-----LKPNVVTYSTLIDAFCKEG 349

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                +        + L    F             +  LID  CK   L  A +L   + 
Sbjct: 350 MMQGAIKLLXDMRRTGLLPNEF------------TYTSLIDANCKAGNLTEAWKLLNDML 397

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           +AG+  N+VTY  L+ GLC  G+M E +       +F+ +   G+ P+   Y  L++ + 
Sbjct: 398 QAGVKLNIVTYTALLDGLCKAGRMIEAEE------VFRSMLKDGISPNQQVYTALVHGYI 451

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K  R+     I  ++      PD + + S+I
Sbjct: 452 KAERMEDAMKILKQMTECNIKPDLILYGSII 482



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 155/353 (43%), Gaps = 43/353 (12%)

Query: 77  FDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           F+Y   M+ +  +P V +++ L     K       + L   +  TGL P+ +TY  LI+ 
Sbjct: 320 FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDA 379

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            CK G ++  + +L  +L++    + VT+T+L+  LC   R++EA  +F  +   G   +
Sbjct: 380 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 439

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG--- 251
              Y  L++G  +      A+ + ++M   N       +PD I Y +II G C +     
Sbjct: 440 QQVYTALVHGYIKAERMEDAMKILKQMTECN------IKPDLILYGSIIWGHCSQRKLEE 493

Query: 252 -------------SANFL--------GFSCMASFSALNKMAFYFPL--VRVQCLCLNFLC 288
                        SAN +         F    S  ALN   F+  +  V V+   + +  
Sbjct: 494 TKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALN---FFQEMQDVGVEATIVTYCV 550

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LIDGLC+   +++A + F  +   GL PNV  Y  LI GLC +  ++  K       LF 
Sbjct: 551 LIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKK------LFD 604

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   G+ PD+  +  LI+   K G +    V+  R+       D   +TSL+
Sbjct: 605 EMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLV 657



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 143/343 (41%), Gaps = 47/343 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L     K    + V SLF  +   G  PD  TYN LINC+CK  ++   F  
Sbjct: 263 PDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEY 322

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +  +   P+ VT+++LI   C E  +  A  L   +R  G   + FTY +LI+  C+
Sbjct: 323 FSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCK 382

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+   A  L  +M     +  +V      TY+ ++DGLCK AG            F ++
Sbjct: 383 AGNLTEAWKLLNDMLQAGVKLNIV------TYTALLDGLCK-AGRM----IEAEEVFRSM 431

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K     P  +V      +  L+ G  K  +++ A ++ + +    + P+++ Y  +I G
Sbjct: 432 LKDGIS-PNQQV------YTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 484

Query: 328 LCNDGQMDETK-----------------------------HYETVFLLFKRLNSTGLFPD 358
            C+  +++ETK                                     F+ +   G+   
Sbjct: 485 HCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEAT 544

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + TY +LI+  C+ G V      F R+L     P+   +TSLI
Sbjct: 545 IVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLI 587



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 131/297 (44%), Gaps = 37/297 (12%)

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
            +++L + F ++G +        R+      P A +   L+  L            F  +
Sbjct: 162 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDM 221

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G    VFTYN +I+ LC+ G    +  LF +M     E G+   PD +TY+++IDG 
Sbjct: 222 IGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMR----EMGL--SPDVVTYNSLIDGY 275

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVR-VQCL--CLNFLCLIDGLCKISKLKIAR 303
            K                 +L ++A  F  ++ V C+   + +  LI+  CK  K+  A 
Sbjct: 276 GK---------------VGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAF 320

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           E F  +   GL PNVVTY+ LI   C +G M      +    L   +  TGL P+ +TY 
Sbjct: 321 EYFSEMKNNGLKPNVVTYSTLIDAFCKEGMM------QGAIKLLXDMRRTGLLPNEFTYT 374

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
            LI+  CK G ++  + +   +L +    + VT+T+L+       +++E    FR +
Sbjct: 375 SLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSM 431



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 117/289 (40%), Gaps = 30/289 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  VF  ML    S P    +  L     K +  +  + + K++    + PD   Y  +
Sbjct: 423 EAEEVFRSMLKDGIS-PNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSI 481

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I   C   ++    ++L  +     + + V  T++I       +  +A   F +++  G 
Sbjct: 482 IWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGV 541

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--- 248
           E  + TY  LI+GLC  G   +A++ F  M        +  +P+   Y+++IDGLC    
Sbjct: 542 EATIVTYCVLIDGLCEAGIVELAVDYFCRM------LSLGLQPNVAVYTSLIDGLCXNNC 595

Query: 249 -EAGSANFLGFSC------MASFSAL--------NKMAFYFPLVRVQCLCLNF-----LC 288
            E+    F    C      + +F+AL        N       + R+  L + F       
Sbjct: 596 IESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTS 655

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           L+ G  +  +L  AR+ F  +   G++P  V    L+R     GQ+DE 
Sbjct: 656 LVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEA 704


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 148/352 (42%), Gaps = 63/352 (17%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L    +     +    L   +   G  P  YTYN +IN  CK G+      V
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV---------FGCELDVFT- 197
              +LRS  +PD+ T+ SL+ + C +  ++E   +F+ +R          F   + +FT 
Sbjct: 328 FAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTR 387

Query: 198 -------------------------YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
                                    Y  LI G CR G   VA+NL  EM          C
Sbjct: 388 SGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQG------C 441

Query: 233 EPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
             D +TY+TI+ GLCK    G A+ L       F+ + + A  FP             LI
Sbjct: 442 AMDVVTYNTILHGLCKRKMLGEADKL-------FNEMTERAL-FPD------SYTLTILI 487

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           DG CK+  L+ A ELFQ +    +  +VVTYN L+ G    G +D  K       ++  +
Sbjct: 488 DGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKE------IWADM 541

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            S  + P   +Y+IL+N  C  G ++  F ++  ++     P  +   S+IK
Sbjct: 542 VSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIK 593



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 147/331 (44%), Gaps = 35/331 (10%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N L G L +    +    +++ ++ +G+  + YT NI++N  CK G++      L ++  
Sbjct: 204 NALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQE 263

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
               PD VT+ +LI    ++  + EA  L   +   G    V+TYNT+INGLC+ G    
Sbjct: 264 KGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYER 323

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA----------------NFLG 257
           A  +F EM            PD+ TY +++   CK+                    + + 
Sbjct: 324 AKEVFAEMLRSG------LSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVC 377

Query: 258 FSCMASF----SALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLP 310
           FS M S       L+K   YF  V+   L  +   +  LI G C+   + +A  L   + 
Sbjct: 378 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEML 437

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           + G   +VVTYN ++ GLC    + E         LF  +    LFPD YT  ILI+  C
Sbjct: 438 QQGCAMDVVTYNTILHGLCKRKMLGEADK------LFNEMTERALFPDSYTLTILIDGHC 491

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K+G + +   +F ++       D VT+ +L+
Sbjct: 492 KLGNLQNAMELFQKMKEKRIRLDVVTYNTLL 522



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 166/394 (42%), Gaps = 53/394 (13%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  +    L E CK   +GD+      E   VF  M + R   P +  F+ +     ++ 
Sbjct: 339 DSTTYRSLLMEACK---KGDVV-----ETEKVFSDMRS-RDVVPDLVCFSSMMSLFTRSG 389

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
           + D  L  F  +   GL PD   Y ILI  +C+ G +S    +   +L+     D VT+ 
Sbjct: 390 NLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYN 449

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           +++  LC    + EA  LF ++       D +T   LI+G C+ G+   A+ LF++M   
Sbjct: 450 TILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEK 509

Query: 225 NGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFSALNKMAFYFPLVRVQC- 281
                     D +TY+T++DG  K  +  +A  + ++ M S   L     Y  LV   C 
Sbjct: 510 R------IRLDVVTYNTLLDGFGKVGDIDTAKEI-WADMVSKEILPTPISYSILVNALCS 562

Query: 282 ---LCLNF----------------LC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
              L   F                +C  +I G C+           + +   G +P+ ++
Sbjct: 563 KGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCIS 622

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNST--GLFPDLYTYNILINCFCKIGRVSSG 378
           YN LI G   +  M +       F L K++     GL PD++TYN +++ FC+  ++   
Sbjct: 623 YNTLIYGFVREENMSKA------FGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEA 676

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            V+  +++     PD  T+T +     IN F  Q
Sbjct: 677 EVVLRKMIERGVNPDRSTYTCM-----INGFVSQ 705



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 3/152 (1%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  V+D M++ +  +P V   N +     ++ +     S  +++   G  PD  +YN L
Sbjct: 568 EAFRVWDEMIS-KNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTL 626

Query: 132 INCFCKMGRVSHGFVVLGRIL--RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           I  F +   +S  F ++ ++   +    PD  T+ S++   C ++++ EA  +  K+   
Sbjct: 627 IYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIER 686

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           G   D  TY  +ING     +   A  + +EM
Sbjct: 687 GVNPDRSTYTCMINGFVSQDNLTEAFRIHDEM 718


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 148/328 (45%), Gaps = 29/328 (8%)

Query: 78  DYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           D +L MR    P  V + N +     +T  +     +F  +   G+ PD  ++  L+   
Sbjct: 132 DMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDERSFRALVVVC 191

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G+V     +L  + R  F+ D  T T +++ LC + R  + +  F ++   G   +V
Sbjct: 192 CREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNV 251

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             Y   I+GLC+  +   A ++ EEM  G G      +P+  T++T+IDGLCK       
Sbjct: 252 VNYTAWIDGLCKRRYVKQAFHVLEEMV-GRG-----LKPNVYTHTTLIDGLCK------- 298

Query: 256 LGFSCMA--SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
           +G++  A   F  L K + Y P V        +  +I G C+  KL  A  L   +   G
Sbjct: 299 IGWTERAFRLFLKLIKSSSYKPNVH------TYTVMIGGYCREGKLARAEMLLVRMVEQG 352

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           L PN  TY  LI G C  G  D        F L  ++   G  P++YTYN +I+ FCK G
Sbjct: 353 LKPNTNTYTTLIGGHCKGGSFDR------AFELMNKMKQEGFLPNIYTYNAVIDGFCKKG 406

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++   + +           D +T+T LI
Sbjct: 407 KIQEAYKVLRMATSQGLKFDKITYTILI 434



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 142/343 (41%), Gaps = 48/343 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++ ++ G   +         L  R+   GL P+  TY  LI   CK G     F 
Sbjct: 319 KPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFE 378

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++ ++ +  F P+  T+ ++I   C + +I EA  +       G + D  TY  LI   C
Sbjct: 379 LMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHC 438

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF--SCMASF 264
           + GH   AL+LF+ M   NG     C PD   Y+++I   C++        F   C+   
Sbjct: 439 KQGHITYALDLFDRMVE-NG-----CCPDIEAYTSLISTYCQQRQMEESQKFFDKCL--- 489

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
                M    P  +       +  +I G CK+ +  +A  +F+ + + G   + +TY  L
Sbjct: 490 -----MIGLLPTKQ------TYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGAL 538

Query: 325 IRGLCNDGQMDETKH-YE-------------TVFLLFK--RLNSTGLF----------PD 358
           I GLC + +++E K  YE              V L F+  R   T +             
Sbjct: 539 ISGLCKESRLEEAKALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQQ 598

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++T ++++     +G V +  +   ++L   +  D  T+T  I
Sbjct: 599 VHTVDVVVRKLSALGDVDAASLFLKKVLDEDYAVDHATYTGFI 641



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 46/257 (17%)

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
            R+ EAA +  ++R  G  L V T N ++     TG  + A  +F+ M         VC 
Sbjct: 125 GRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG-----VC- 178

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP----LVRVQCLC------ 283
           PD  ++  ++   C+E            A  +A+ +  F        V V+ LC      
Sbjct: 179 PDERSFRALVVVCCREGKVEEV-----DALLAAMWRYGFSLDNATCTVVVRSLCEKGRFK 233

Query: 284 ------------------LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                             +N+   IDGLCK   +K A  + + +   GL PNV T+  LI
Sbjct: 234 DVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLI 293

Query: 326 RGLCNDGQMDETKHYETVFLLF-KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
            GLC  G        E  F LF K + S+   P+++TY ++I  +C+ G+++   ++  R
Sbjct: 294 DGLCKIGWT------ERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVR 347

Query: 385 ILPSCFTPDAVTFTSLI 401
           ++     P+  T+T+LI
Sbjct: 348 MVEQGLKPNTNTYTTLI 364


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 147/326 (45%), Gaps = 29/326 (8%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  R   P V ++N+L   L K       L+L K ++  G+ PD  TYN LI     + 
Sbjct: 253 MMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVL 312

Query: 140 RVSHGFVVLGRILR--SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFT 197
            +      L  +++  +   PD VTF S+I  LC   R+ +A  +   +   GC  ++ T
Sbjct: 313 EMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVT 372

Query: 198 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
           YN LI G  R     +A+NL +E+A          EPD+ TYS +I+G  K         
Sbjct: 373 YNYLIGGFLRVHKVKMAMNLMDELAISG------LEPDSFTYSILINGFSKMWEVDRAEK 426

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA-GLMP 316
           F C      +    F++            + L+  +C+   ++ A  LF  + +  GL  
Sbjct: 427 FLCTMRQRGIKAELFHY------------IPLLAAMCQQGMMERAMGLFNEMDKNCGL-- 472

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           + + Y+ +I G C  G M      +TV  L + +   GL PD  TY++LIN + K+G + 
Sbjct: 473 DAIAYSTMIHGACKSGDM------KTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLE 526

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIK 402
               +  ++  S F PD   F SLIK
Sbjct: 527 EAERVLKQMTASGFVPDVAVFDSLIK 552



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 136/288 (47%), Gaps = 31/288 (10%)

Query: 124 DRYTYNILINCFCKMG----RVSHGFVV-LGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
           D  +YN ++   C+ G    R +   +V + R       P+AV++T++++ LCA  R  E
Sbjct: 82  DAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGE 141

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A AL   ++  G   DV TY TLI GLC       AL L +EM  G+G      +P+ + 
Sbjct: 142 AVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMC-GSG-----VQPNVVV 195

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           YS ++ G C+ +G    +G      F  +++      ++        F  LID LCK  K
Sbjct: 196 YSCLLRGYCR-SGRWQDVG----KVFEDMSRRGIKPDVIM-------FTGLIDDLCKEGK 243

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
              A ++   + + GL PNVVTYN+LI  LC +G + E         L K ++  G+ PD
Sbjct: 244 TGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREA------LTLRKEMDDKGVAPD 297

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILP--SCFTPDAVTFTSLIKIL 404
           + TYN LI     +  +         ++   +   PD VTF S+I  L
Sbjct: 298 VVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGL 345



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 134/290 (46%), Gaps = 22/290 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R  V ++  L   L      D  L L   +  +G+ P+   Y+ L+  +C+ GR      
Sbjct: 155 RADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGK 214

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   + R    PD + FT LI DLC E +  +AA +   +   G E +V TYN LIN LC
Sbjct: 215 VFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLC 274

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    AL L +EM +     GV   PD +TY+T+I GL      +  L      SF  
Sbjct: 275 KEGSVREALTLRKEMDDK----GVA--PDVVTYNTLIAGL------SGVLEMDEAMSF-- 320

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L +M     +V    +  N   +I GLCKI ++  A ++ + +   G M N+VTYN LI 
Sbjct: 321 LEEMIQGDTVVEPDVVTFN--SVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIG 378

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           G             +    L   L  +GL PD +TY+ILIN F K+  V 
Sbjct: 379 GFLR------VHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVD 422



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 152/349 (43%), Gaps = 52/349 (14%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  ++ L     ++  +  V  +F+ ++  G+ PD   +  LI+  CK G+      
Sbjct: 190 QPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAK 249

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   +++    P+ VT+  LI  LC E  + EA  L  ++   G   DV TYNTLI GL 
Sbjct: 250 VKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLS 309

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A++  EEM  G+     V EPD +T++++I GLCK            M     
Sbjct: 310 GVLEMDEAMSFLEEMIQGD----TVVEPDVVTFNSVIHGLCK---------IGRMTQAVK 356

Query: 267 LNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           + +M     +    C+C  + +  LI G  ++ K+K+A  L   L  +GL P+  TY+IL
Sbjct: 357 VREM-----MAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSIL 411

Query: 325 IRGLCNDGQMDETK----------------HY-------------ETVFLLFKRLNST-G 354
           I G     ++D  +                HY             E    LF  ++   G
Sbjct: 412 INGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMDKNCG 471

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           L  D   Y+ +I+  CK G + +   +   +L     PDAVT++ LI +
Sbjct: 472 L--DAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINM 518



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 132/307 (42%), Gaps = 27/307 (8%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKT-----KHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           +L+  P      S+N +   L +      +   ++L    R       P+  +Y  ++  
Sbjct: 73  LLSALPDVRDAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRG 132

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            C   R      +L  +  S    D VT+ +LI+ LC  S +  A  L  ++   G + +
Sbjct: 133 LCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPN 192

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           V  Y+ L+ G CR+G       +FE+M+          +PD I ++ +ID LCKE  +  
Sbjct: 193 VVVYSCLLRGYCRSGRWQDVGKVFEDMSRRG------IKPDVIMFTGLIDDLCKEGKTGK 246

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                 M     L       P V      + +  LI+ LCK   ++ A  L + +   G+
Sbjct: 247 AAKVKDMMVQRGLE------PNV------VTYNVLINSLCKEGSVREALTLRKEMDDKGV 294

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            P+VVTYN LI GL    +MDE       FL       T + PD+ T+N +I+  CKIGR
Sbjct: 295 APDVVTYNTLIAGLSGVLEMDEAMS----FLEEMIQGDTVVEPDVVTFNSVIHGLCKIGR 350

Query: 375 VSSGFVI 381
           ++    +
Sbjct: 351 MTQAVKV 357



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +++ +     K+    TV  L + +   GL PD  TY++LIN + K+G +     VL ++
Sbjct: 476 AYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQM 535

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
             S F PD   F SLIK   AE +  +   L  ++R      D    +T+I
Sbjct: 536 TASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRAKNVAFDPKIISTII 586



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 9/149 (6%)

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLT-GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS 154
           L   + +    +  + LF  ++   GL  D   Y+ +I+  CK G +     ++  +L  
Sbjct: 446 LLAAMCQQGMMERAMGLFNEMDKNCGL--DAIAYSTMIHGACKSGDMKTVKQLIQDMLDE 503

Query: 155 CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA 214
              PDAVT++ LI        + EA  +  ++   G   DV  +++LI G    G T   
Sbjct: 504 GLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKV 563

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTII 243
           L L  EM   N  F    +P  I  STII
Sbjct: 564 LKLIHEMRAKNVAF----DPKII--STII 586


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 145/334 (43%), Gaps = 60/334 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A   FD M+  +   P + +FN +     K    +TV  L+  +    +    YT+NI
Sbjct: 183 DDAFECFD-MMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNI 241

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK G++      +G +      P+ VT+ ++I   C+  R+  A  +   ++  G
Sbjct: 242 MINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRG 301

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            E D +TY +LI+G+C+ G    A  + E+M     E G++  P A+TY+T+IDG C + 
Sbjct: 302 VEPDSYTYGSLISGMCKGGKLEEASGILEKMK----EIGLL--PTAVTYNTLIDGYCNKG 355

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                 G+                                                  + 
Sbjct: 356 DLVKAFGYR-----------------------------------------------DEMV 368

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R  ++P V TYN+LI  L  +G+MDE         + K +  +G+ PD  TYNILIN +C
Sbjct: 369 RRAILPTVSTYNLLIHALFLEGKMDEADG------MIKDMGDSGIVPDSITYNILINGYC 422

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + G     F +   ++     P  VT+TSLI +L
Sbjct: 423 RCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVL 456



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 156/346 (45%), Gaps = 51/346 (14%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +  V +FNI+   L K             +   G+ P+  TYN +I+ +C  GRV    +
Sbjct: 233 KSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARM 292

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL  +      PD+ T+ SLI  +C   ++ EA+ +  K++  G      TYNTLI+G C
Sbjct: 293 VLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYC 352

Query: 207 RTGHTIVALNLFEEM---------------------------ANG----NGEFGVVCEPD 235
             G  + A    +EM                           A+G     G+ G+V  PD
Sbjct: 353 NKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIV--PD 410

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
           +ITY+ +I+G C+  G+A         +F+  ++M        +Q   + +  LI  L K
Sbjct: 411 SITYNILINGYCR-CGNAK-------KAFNLHDEMISK----GIQPTLVTYTSLIYVLSK 458

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
            +++K A +LF+ + R G  P+++ +N LI G C +G +D        F L K ++   +
Sbjct: 459 RNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDR------AFALLKEMDKRNI 512

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            PD  TYN L+   C+ G+V     +   +      PD +++ +LI
Sbjct: 513 VPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLI 558



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 152/353 (43%), Gaps = 36/353 (10%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  V D M N R   P   ++  L   + K    +    + +++   GL P   TYN LI
Sbjct: 290 ARMVLDIMKN-RGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLI 348

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + +C  G +   F     ++R    P   T+  LI  L  E ++ EA  +   +   G  
Sbjct: 349 DGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIV 408

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII--------- 243
            D  TYN LING CR G+   A NL +EM +         +P  +TY+++I         
Sbjct: 409 PDSITYNILINGYCRCGNAKKAFNLHDEMISKG------IQPTLVTYTSLIYVLSKRNRM 462

Query: 244 -------DGLCKEAGSANFLGFSCMASFSALN-KMAFYFPLVR------VQCLCLNFLCL 289
                  + + +E  S + + F+ +      N  +   F L++      +    + +  L
Sbjct: 463 KAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTL 522

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           + G C+  K++ AREL + + R G+ P+ ++YN LI G    G +++       F +   
Sbjct: 523 MQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDIND------AFTIRDE 576

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           + S G  P L TYN LI   CK  +      +   ++    TPD  T+ SLI+
Sbjct: 577 MLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIE 629



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 119/285 (41%), Gaps = 56/285 (19%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V+++N+L   L      D    + K +  +G+ PD  TYNILIN +C+ G     F +
Sbjct: 374 PTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNL 433

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF----------- 196
              ++     P  VT+TSLI  L   +R+  A  LF K+   G   D+            
Sbjct: 434 HDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCA 493

Query: 197 ------------------------TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
                                   TYNTL+ G CR G    A  L +EM           
Sbjct: 494 NGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRG------I 547

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
            PD I+Y+T+I G  K  G  N        +F+  ++M      +      L +  LI G
Sbjct: 548 RPDHISYNTLISGYSKR-GDIN-------DAFTIRDEMLS----IGFNPTLLTYNALIQG 595

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           LCK  +  +A EL + +   G+ P+  TY  LI G+   G++D++
Sbjct: 596 LCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGI---GKVDDS 637


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 144/305 (47%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+         +   S   L     
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYV 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 129/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG------LKPDKITYTTLIDGSCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------HLETAFEYRKRMI----KENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLLKEMQRDGYVPSVVT 418



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 139/315 (44%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R P  +   +   L K K++  V   ++     G     Y +NIL++ F K G +     
Sbjct: 98  RVPFDTCRKVJEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQS 157

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   I +    P  V+F +L+        + E   L   ++  G + DV+TY+ LINGLC
Sbjct: 158 VFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLC 217

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      A  LF+EM +     G+V  P+ +T++T+IDG CK  G  +      M  +  
Sbjct: 218 KESKMDDANELFDEMLDN----GLV--PNGVTFTTLIDGHCKN-GRVDL----AMEIYKQ 266

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +   +    L+        +  LI GLCK   LK A++L   +   GL P+ +TY  LI 
Sbjct: 267 MLSQSLSPDLI-------TYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLID 319

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C +G      H ET F   KR+    +  D   Y  LI+  C+ GR      +   +L
Sbjct: 320 GSCKEG------HLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREML 373

Query: 387 PSCFTPDAVTFTSLI 401
                P+  T+T +I
Sbjct: 374 SVGLKPEIGTYTMII 388


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 161/322 (50%), Gaps = 28/322 (8%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM---GR 140
           R  +P V +FN++   L KT   +    + + + + G  P+  +YN LI+ +CK+   G+
Sbjct: 217 RKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGK 276

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     VL  ++ +  +P+  TF  LI     +  +  +  +F ++     + +V +YN+
Sbjct: 277 MYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNS 336

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LINGLC  G    A+++ ++M +     GV  +P+ ITY+ +I+G CK     N +    
Sbjct: 337 LINGLCNGGKISEAISMRDKMVSA----GV--QPNLITYNALINGFCK-----NDMLKEA 385

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           +  F ++ K     P  R+      +  LID  CK+ K+     L + + R G++P+V T
Sbjct: 386 LDMFGSV-KGQGAVPTTRM------YNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGT 438

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN LI GLC +G ++  K       LF +L S GL PDL T++IL+  +C+ G      +
Sbjct: 439 YNCLIAGLCRNGNIEAAKK------LFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAM 491

Query: 381 IFGRILPSCFTPDAVTFTSLIK 402
           +   +      P  +T+  ++K
Sbjct: 492 LLKEMSKMGLKPRHLTYNIVMK 513



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 154/343 (44%), Gaps = 34/343 (9%)

Query: 57  CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
           CK  G G +      +A  V   M+    S P +T+FNIL     K  +    + +FK +
Sbjct: 269 CKLGGNGKMY-----KADAVLKEMVENDVS-PNLTTFNILIDGFWKDDNLPGSMKVFKEM 322

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
               + P+  +YN LIN  C  G++S    +  +++ +   P+ +T+ +LI   C    +
Sbjct: 323 LDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDML 382

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
            EA  +F  ++  G       YN LI+  C+ G       L EEM       G+V  PD 
Sbjct: 383 KEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEME----REGIV--PDV 436

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLC 294
            TY+ +I GLC+              +  A  K+   F  +  + L   + F  L++G C
Sbjct: 437 GTYNCLIAGLCRN------------GNIEAAKKL---FDQLTSKGLPDLVTFHILMEGYC 481

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           +  + + A  L + + + GL P  +TYNI+++G C +G +    +  T     +RL    
Sbjct: 482 RKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRM-- 539

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
              ++ +YN+L+  + + G++    ++   +L     P+ +T+
Sbjct: 540 ---NVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 149/307 (48%), Gaps = 28/307 (9%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
            L K      V  ++K +    + P+ +T+N++IN  CK G+++    V+  +     +P
Sbjct: 197 ALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSP 256

Query: 159 DAVTFTSLIKDLC---AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           + V++ +LI   C      ++ +A A+  ++       ++ T+N LI+G  +  +   ++
Sbjct: 257 NVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSM 316

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            +F+EM + +       +P+ I+Y+++I+GLC         G     + S  +KM     
Sbjct: 317 KVFKEMLDQD------VKPNVISYNSLINGLCN--------GGKISEAISMRDKMVS--- 359

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
              VQ   + +  LI+G CK   LK A ++F S+   G +P    YN+LI   C  G++D
Sbjct: 360 -AGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKID 418

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           +       F L + +   G+ PD+ TYN LI   C+ G + +   +F + L S   PD V
Sbjct: 419 DG------FALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQ-LTSKGLPDLV 471

Query: 396 TFTSLIK 402
           TF  L++
Sbjct: 472 TFHILME 478



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 135/297 (45%), Gaps = 34/297 (11%)

Query: 88  PPVTSFNIL------FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           P V S+N L       G   K    D VL   K +    + P+  T+NILI+ F K   +
Sbjct: 256 PNVVSYNTLIDGYCKLGGNGKMYKADAVL---KEMVENDVSPNLTTFNILIDGFWKDDNL 312

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                V   +L     P+ +++ SLI  LC   +I EA ++  K+   G + ++ TYN L
Sbjct: 313 PGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNAL 372

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           ING C+      AL++F  +  G G       P    Y+ +ID  CK     +  GF+  
Sbjct: 373 INGFCKNDMLKEALDMFGSVK-GQGAV-----PTTRMYNMLIDAYCKLGKIDD--GFALK 424

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
                  +     P V        + CLI GLC+   ++ A++LF  L   GL P++VT+
Sbjct: 425 EEM----EREGIVPDVGT------YNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTF 473

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           +IL+ G C  G+           +L K ++  GL P   TYNI++  +CK G + + 
Sbjct: 474 HILMEGYCRKGE------SRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAA 524



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 135/311 (43%), Gaps = 27/311 (8%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           ++L    A    ++     FKR    G      +   L+    K  R +    V   ++R
Sbjct: 157 DMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIR 216

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR---TGH 210
               P+  TF  +I  LC   ++ +A  +   ++V+GC  +V +YNTLI+G C+    G 
Sbjct: 217 RKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGK 276

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A  + +EM   +        P+  T++ +IDG  K+    N  G   M  F  +   
Sbjct: 277 MYKADAVLKEMVEND------VSPNLTTFNILIDGFWKD---DNLPG--SMKVFKEMLDQ 325

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                   V+   +++  LI+GLC   K+  A  +   +  AG+ PN++TYN LI G C 
Sbjct: 326 D-------VKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCK 378

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
           +  + E         +F  +   G  P    YN+LI+ +CK+G++  GF +   +     
Sbjct: 379 NDMLKEA------LDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGI 432

Query: 391 TPDAVTFTSLI 401
            PD  T+  LI
Sbjct: 433 VPDVGTYNCLI 443



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 137/309 (44%), Gaps = 32/309 (10%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           ++ VF  ML+ +  +P V S+N L   L         +S+  ++   G+ P+  TYN LI
Sbjct: 315 SMKVFKEMLD-QDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALI 373

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N FCK   +     + G +      P    +  LI   C   +I +  AL  ++   G  
Sbjct: 374 NGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIV 433

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            DV TYN LI GLCR G+   A  LF+++ +     G+   PD +T+  +++G C++  S
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSK----GL---PDLVTFHILMEGYCRKGES 486

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                         ++KM        ++   L +  ++ G CK   LK A  +   + + 
Sbjct: 487 R-----KAAMLLKEMSKMG-------LKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKE 534

Query: 313 -GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
             L  NV +YN+L++G    G++++        +L   +   GL P+  TY I+     K
Sbjct: 535 RRLRMNVASYNVLLQGYSQKGKLEDAN------MLLNEMLEKGLVPNRITYEIV-----K 583

Query: 372 IGRVSSGFV 380
              V  GFV
Sbjct: 584 EEMVDQGFV 592


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 168/411 (40%), Gaps = 98/411 (23%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + +FN++   L + + +   L+++ ++    L PD  TY ILI+  CK  +     V
Sbjct: 160 KPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALV 219

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +      P+ + ++ ++  LC   +I +A  LF+K+R  GC  D+ TYN L+NG C
Sbjct: 220 LFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFC 279

Query: 207 RTGHTIVALNLFEEMANGNGEFGVV-----------------------------CEPDAI 237
           ++G+   A  L + +       GV+                              +PD +
Sbjct: 280 KSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVM 339

Query: 238 TYSTIIDGLCKEAGSANFL-----------------------GFSCMASFSALNKMAFYF 274
            Y+ +I GL +E      L                       GF  M        +    
Sbjct: 340 LYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRL-- 397

Query: 275 PLVRVQCLCLN--FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
            + +  C   N  +  LI G+CK   +  A+ +F+ + + G +P+VVT+N LI GLC   
Sbjct: 398 EISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKAN 457

Query: 333 QMDETK----HYETV--------------------------------------FLLFKRL 350
           +++E +      E V                                      + L  +L
Sbjct: 458 RLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQL 517

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +G+ PD+ TYNILIN FCK G ++  F +F  +      PD+VT+ +LI
Sbjct: 518 VDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLI 568



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 149/326 (45%), Gaps = 39/326 (11%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  +  L   L + + Y+     ++++    + PD   Y I+I    + GRV+    +LG
Sbjct: 303 VIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLG 362

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      PD + + +LIK  C    + EA +L  ++    C  +  TY+ LI G+C+ G
Sbjct: 363 EMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNG 422

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A ++F+EM        + C P  +T++++I+GLCK    AN L  +         +
Sbjct: 423 LINKAQHIFKEMEK------LGCLPSVVTFNSLINGLCK----ANRLEEA---------R 463

Query: 270 MAFY-FPLVRVQCLCLNFLCLIDGLCKISKLKI-------------ARELFQSLPRAGLM 315
           + FY   +VR   L L      D +  I+ L++             A +L   L  +G++
Sbjct: 464 LLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVL 523

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P++ TYNILI G C  G ++        F LFK +   G  PD  TY  LI+   + GR 
Sbjct: 524 PDIRTYNILINGFCKFGNIN------GAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRN 577

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
                IF +++     P++ T+ +++
Sbjct: 578 EDALEIFEQMVKKGCVPESSTYKTIM 603



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 170/388 (43%), Gaps = 33/388 (8%)

Query: 18  SRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVF 77
           SR  + +I+      P T    RL +    S       RC++  +  I  +    A  ++
Sbjct: 57  SRIRSYTITSVLQEQPDTRLGFRLFIWSLKSWHL----RCRTVQDLIIGKLIKENAFELY 112

Query: 78  DYMLN-MRPSRPPVTS--FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
             +L  ++ S   ++S  F++L    ++    +  +  F  +      PD + +N++++ 
Sbjct: 113 WKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLILHF 172

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
             +         V  ++L+    PD VT+  LI  LC   +  +A  LF ++   G   +
Sbjct: 173 LVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPN 232

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
              Y+ +++GLC+      A  LF +M A+G       C  D ITY+ +++G CK    +
Sbjct: 233 QIIYSIVLSGLCQAKKIFDAQRLFSKMRASG-------CNRDLITYNVLLNGFCK----S 281

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
            +L      +F+ L  +     ++ V    + + CLI+GL +  + + A   +Q + R  
Sbjct: 282 GYLD----DAFTLLQLLTKDGHILGV----IGYGCLINGLFRARRYEEAHMWYQKMLREN 333

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           + P+V+ Y I+IRGL  +G++ E         L   +   GL PD   YN LI  FC +G
Sbjct: 334 IKPDVMLYTIMIRGLSQEGRVTEA------LTLLGEMTERGLRPDTICYNALIKGFCDMG 387

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +     +   I      P+  T++ LI
Sbjct: 388 YLDEAESLRLEISKHDCFPNNHTYSILI 415



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 132/312 (42%), Gaps = 24/312 (7%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
           T  +++ G L K   ++    + + L  + +      +++LI  + + G           
Sbjct: 94  TVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSL 153

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +      PD   F  ++  L  +   + A A++ ++       DV TY  LI+GLC+T  
Sbjct: 154 MRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCK 213

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
           T  AL LF+EM +     G++  P+ I YS ++ GLC+         F     FS +   
Sbjct: 214 TQDALVLFDEMTDR----GIL--PNQIIYSIVLSGLCQAKKI-----FDAQRLFSKMRAS 262

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                L+        +  L++G CK   L  A  L Q L + G +  V+ Y  LI GL  
Sbjct: 263 GCNRDLI-------TYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLF- 314

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
                  + YE   + ++++    + PD+  Y I+I    + GRV+    + G +     
Sbjct: 315 -----RARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGL 369

Query: 391 TPDAVTFTSLIK 402
            PD + + +LIK
Sbjct: 370 RPDTICYNALIK 381



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 126/290 (43%), Gaps = 41/290 (14%)

Query: 60  SGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT 119
           S EG +T     EAL +   M   R  RP    +N L        + D   SL   ++  
Sbjct: 349 SQEGRVT-----EALTLLGEMTE-RGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKH 402

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
             FP+ +TY+ILI   CK G ++    +   + +    P  VTF SLI  LC  +R+ EA
Sbjct: 403 DCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEA 462

Query: 180 AALFTKLRVF-----------GCE--LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
             LF ++ +            G +   D+ +   ++  LC +G  + A  L  ++ +   
Sbjct: 463 RLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDS-- 520

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF--YFPLVRVQCLCL 284
             GV+  PD  TY+ +I+G CK  G+ N        +F    +M    + P        +
Sbjct: 521 --GVL--PDIRTYNILINGFCK-FGNIN-------GAFKLFKEMQLKGHMP------DSV 562

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
            +  LIDGL +  + + A E+F+ + + G +P   TY  ++   C +  +
Sbjct: 563 TYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNI 612



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 65/129 (50%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + S  ++   L ++        L  +L  +G+ PD  TYNILIN FCK G ++  F +  
Sbjct: 491 IASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFK 550

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      PD+VT+ +LI  L    R  +A  +F ++   GC  +  TY T++   CR  
Sbjct: 551 EMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCREN 610

Query: 210 HTIVALNLF 218
           +  +AL+++
Sbjct: 611 NISLALSVW 619



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++NIL     K  + +    LFK + L G  PD  TY  LI+   + GR      +
Sbjct: 524 PDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEI 583

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK-LRVF 189
             ++++    P++ T+ +++   C E+ I  A +++ K LR F
Sbjct: 584 FEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDF 626


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 143/310 (46%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 185

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++  A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 245

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L    F
Sbjct: 246 LAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 299

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 300 ------------TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 347

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY +++N FCK G V  G  +   +      
Sbjct: 348 RSVDAEK-------MLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHA 400

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 401 PSVVTYNVLM 410



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 133/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 142 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 200

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 201 NGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 260

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD  TY+T+IDG CKE   
Sbjct: 261 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG------LKPDKFTYTTLIDGCCKEG-- 312

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 313 ------DLDTAFEHRKRMI----QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 362

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY +++   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 363 GLKPDTGTYTMIVNEFCKKGDVWKGSK------LLKEMQRDGHAPSVVTYNVLMN 411



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 190 QPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 249

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L     PD +T+ +LI  LC +  + +A  L  ++ + G + D FTY TLI+G C
Sbjct: 250 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCC 309

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 310 KEGDLDTAFEHRKRMIQEN------IRLDDVAYTALISGLCQEGRSVD------------ 351

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +++  CK   +    +L + + R G  P+VVTYN+L+ 
Sbjct: 352 AEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMN 411

Query: 327 G 327
           G
Sbjct: 412 G 412



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+ +   P + ++N L   L K         L   +++ GL PD++TY  LI
Sbjct: 247 AMEIYKQMLS-QSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 305

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E R ++A  +  ++   G +
Sbjct: 306 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 365

Query: 193 LD-----------------------------------VFTYNTLING 204
            D                                   V TYN L+NG
Sbjct: 366 PDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 94  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 147

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI
Sbjct: 148 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 200


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 146/337 (43%), Gaps = 35/337 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   L +    + + SL   +    L P+   YN +I+  CK    S   VV
Sbjct: 327 PTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVV 386

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++      PDA+TF++LI  LC E R+ EA  L  +   +    ++ +Y +LI+G C 
Sbjct: 387 LKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCV 446

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFSA 266
            G  IVA NL  EM     E G    PD +T+  +I GL      S   L    MA+   
Sbjct: 447 RGEVIVASNLLVEMM----ERGHT--PDVVTFGALIHGLVVAGQVSEALLVREKMAARQL 500

Query: 267 LNKMAFYFPLVRVQC---------------LCLN-------FLCLIDGLCKISKLKIARE 304
           L     Y  L+   C               L  N       +  LIDG  +   L  AR+
Sbjct: 501 LPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARK 560

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +F+ + + G+ P+VV YN +I+G C  G M+E             +   G  PD +TY  
Sbjct: 561 IFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVE------CMSTMRKVGRIPDEFTYTT 614

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LI  + K G +S    +   ++     P+ V ++SLI
Sbjct: 615 LIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLI 651



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 132/283 (46%), Gaps = 24/283 (8%)

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
            G  P+   YN+LI+ +C+ G V  G ++LG +      P  VT+ +L+  L  +  + +
Sbjct: 288 AGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEK 347

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
            A+L +++R      +V  YN++I+ LC+      AL + ++M  G       C+PDAIT
Sbjct: 348 IASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGG------CDPDAIT 401

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           +ST+I GLC+E             +   LN                ++  LI G C   +
Sbjct: 402 FSTLISGLCQEGRVQEAERLLRETTRWELNPNLS------------SYTSLIHGFCVRGE 449

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           + +A  L   +   G  P+VVT+  LI GL   GQ+ E        L+ +++ +  L PD
Sbjct: 450 VIVASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEA------LLVREKMAARQLLPD 503

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              YN+LI+  CK   + +   +   +L     PD   +T+LI
Sbjct: 504 ANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLI 546



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 133/331 (40%), Gaps = 34/331 (10%)

Query: 50  EQFLKERCKSSGEGDITSITP--------NEALCVFDYMLNM--RPSRPPVTSFNILFGC 99
           E+ L+E  +     +++S T          E +   + ++ M  R   P V +F  L   
Sbjct: 419 ERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHG 478

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L         L + +++    L PD   YN+LI+  CK   +     ++  +L     PD
Sbjct: 479 LVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPD 538

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
              +T+LI        + EA  +F  +   G   DV  YN +I G C+ G    A+    
Sbjct: 539 KYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMS 598

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
            M     + G +  PD  TY+T+I G  K+   +  L   C      + +        R 
Sbjct: 599 TMR----KVGRI--PDEFTYTTLIGGYAKQGNISGALSLLC----DMMKR--------RC 640

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
           Q   + +  LI+G CK+     A  LF S+   GL PNV+TY ILI  L    ++     
Sbjct: 641 QPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAM 700

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           Y    LL +        P+ YT + L+   C
Sbjct: 701 YFEYMLLNQ------CSPNDYTLHSLVTGLC 725



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 135/336 (40%), Gaps = 49/336 (14%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P    +  L     + +  D    +F+ +   G+ PD   YN +I  +C+ G ++    
Sbjct: 536 HPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVE 595

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            +  + +    PD  T+T+LI     +  I  A +L   +    C+ +V  Y++LING C
Sbjct: 596 CMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYC 655

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G T  A  LF  M +  G F     P+ ITY+ +I  L K+                 
Sbjct: 656 KLGDTDAAECLFGSMES-QGLF-----PNVITYTILIGSLFKK---------------DK 694

Query: 267 LNKMAFYFPLVRV-QCLCLNFL--CLIDGLCKISKLKIAR---------------ELFQS 308
           + + A YF  + + QC   ++    L+ GLC      I+                ++F++
Sbjct: 695 VVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRA 754

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L      P    YN +I  LC    + E         L  ++ + G  PD  T+  L+  
Sbjct: 755 LVNDRCDPRNSAYNAIIFSLCIHNMLGEA------LDLKNKMANKGYKPDSATFLSLLYG 808

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           FC +G+       +  ILP+ F  D +   S  KIL
Sbjct: 809 FCSVGKSRE----WRTILPNEFQRDELEVASRYKIL 840



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 41/151 (27%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           ++ GLC    ++   +L ++   AG +PN V YN+LI G C  G +          LL  
Sbjct: 265 MVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRG------ILLLG 318

Query: 349 RLNSTGLFPDLYT-----------------------------------YNILINCFCKIG 373
            + + GL P + T                                   YN +I+  CK  
Sbjct: 319 EMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCR 378

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             S   V+  ++      PDA+TF++LI  L
Sbjct: 379 SASQALVVLKQMFAGGCDPDAITFSTLISGL 409



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           +++RGLC +G +      E    L +     G  P+   YN+LI+ +C+ G V  G ++ 
Sbjct: 264 VMVRGLCLEGLV------EKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLL 317

Query: 383 GRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
           G +      P  VT+ +L+  L       ++A
Sbjct: 318 GEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIA 349


>gi|147789723|emb|CAN67400.1| hypothetical protein VITISV_025966 [Vitis vinifera]
          Length = 550

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 144/314 (45%), Gaps = 26/314 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N+L G L K     T + L   ++L+G  PD  TYN ++ C    G        
Sbjct: 198 PDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGFDQAIGF 257

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
               LR       +T+T LI+ +C     ++A  +   + + GC  D+ TYN+L+N  C+
Sbjct: 258 WKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCK 317

Query: 208 TG-HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            G +   AL ++  +++G G       P+ +TY+T++  LC                +  
Sbjct: 318 QGKYEDTALIIYNLLSHGMG-------PNTVTYNTLLHSLCTHG------------YWDE 358

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           ++++     +       + +  LI+GLCK   L  A   F  +     +P+++TYN L+ 
Sbjct: 359 VDEILLIMNMTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLA 418

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC +G +DE  H      L   LN T   P L TYNI+I+   K G +     ++G ++
Sbjct: 419 ALCKEGMVDEALH------LLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMGLYGEMI 472

Query: 387 PSCFTPDAVTFTSL 400
              F PD +T  +L
Sbjct: 473 ERGFAPDDITHRTL 486



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 122/276 (44%), Gaps = 28/276 (10%)

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI    K+        VL  ++ S   PD +T+  L+  LC +  +  A  L  ++ + G
Sbjct: 171 LIRGLIKLESTERATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSG 230

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  D  TYNT++  +   G    A+  +++           C    ITY+ +I+ +CK  
Sbjct: 231 CPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKG------CPAYLITYTVLIELVCKHC 284

Query: 251 GSANFLGFSCMASFSALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           G+        + +   L  MA    +P +      + +  L++  CK  K +    +  +
Sbjct: 285 GT--------VQAMEVLEDMAIEGCYPDI------VTYNSLVNYTCKQGKYEDTALIIYN 330

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   G+ PN VTYN L+  LC  G  DE    + + L+   +N T   P + TYNILIN 
Sbjct: 331 LLSHGMGPNTVTYNTLLHSLCTHGYWDEV---DEILLI---MNMTSQPPTVVTYNILING 384

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            CK G +      F +++     PD +T+ +L+  L
Sbjct: 385 LCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAAL 420



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 6/159 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   L    ++D V  +   +N+T   P   TYNILIN  CK G +      
Sbjct: 338 PNTVTYNTLLHSLCTHGYWDEVDEILLIMNMTSQPPTVVTYNILINGLCKYGLLDRAINF 397

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++     PD +T+ +L+  LC E  + EA  L   L    C   + TYN +I+GL +
Sbjct: 398 FDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAK 457

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
            G    A+ L+ EM     E G    PD IT+ T+  GL
Sbjct: 458 KGCMEKAMGLYGEMI----ERGFA--PDDITHRTLFWGL 490



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 29/154 (18%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET----------- 337
           L+ GLCK   LK A EL   +  +G  P+ +TYN ++R + + G  D+            
Sbjct: 206 LVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKG 265

Query: 338 ----------------KHYETV--FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                           KH  TV    + + +   G +PD+ TYN L+N  CK G+     
Sbjct: 266 CPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTA 325

Query: 380 VIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           +I   +L     P+ VT+ +L+  L  + ++ +V
Sbjct: 326 LIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEV 359



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 9/174 (5%)

Query: 61  GEGDITSITPNEALCVFDY---------MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
           G   +T  T   +LC   Y         ++NM    P V ++NIL   L K    D  ++
Sbjct: 337 GPNTVTYNTLLHSLCTHGYWDEVDEILLIMNMTSQPPTVVTYNILINGLCKYGLLDRAIN 396

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
            F ++      PD  TYN L+   CK G V     +L  +  +  +P  +T+  +I  L 
Sbjct: 397 FFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLA 456

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
            +  + +A  L+ ++   G   D  T+ TL  GL R      AL + +EM   N
Sbjct: 457 KKGCMEKAMGLYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRN 510



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           ++  LC   KL  A  L   + R   +P   +   LIRGL    +++ T   E    + K
Sbjct: 136 ILQNLCSKGKLVNASRLIDVMARRNQIPYFPSCINLIRGLI---KLEST---ERATRVLK 189

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            +  +G  PD+ TYN+L+   CK G + +   +   +  S   PDA+T+ ++++ +  + 
Sbjct: 190 IMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHG 249

Query: 409 FFRQV 413
            F Q 
Sbjct: 250 GFDQA 254


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 149/361 (41%), Gaps = 51/361 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  +FD M     S P V ++ I+          +T + L   +   GL  +   Y  
Sbjct: 270 KDAHQLFDEM----ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTS 325

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I   C  G+VS    V+  ++      DA  FT+++   C +  +  A   F +++  G
Sbjct: 326 VIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRG 385

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  TY  LINGLCR G    A  + +EM +   +       DA+TY+ +IDG CK  
Sbjct: 386 LAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDV------DAVTYTVLIDGYCKVG 439

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                       +F   NKM       RV    + +  L DGLCK   +  A EL   + 
Sbjct: 440 --------KMTEAFLVHNKMVQK----RVTPNVVTYTALSDGLCKQGDVCAANELLHEMC 487

Query: 311 RAGLMPNVVTYNILIRGLCNDG----------QMDE-------------------TKHYE 341
             GL  N+ TYN LI GLC  G           MDE                   +K  +
Sbjct: 488 SKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELD 547

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               L + +   G+ P + TYN+L+N FC  GRV  G  +   +L     P+  T+ SL+
Sbjct: 548 RAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLM 607

Query: 402 K 402
           K
Sbjct: 608 K 608



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 154/324 (47%), Gaps = 28/324 (8%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++  L   L +         + + +   GL  D  TY +LI+ +CK+G+++  F+V  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           ++   TP+ VT+T+L   LC +  +  A  L  ++   G EL++FTYN+LINGLC+ G+ 
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNK 269
             A+    +M     E G+  +PD  TY+TII  LC  KE   A+ L          L +
Sbjct: 512 EQAMRTMIDM----DEAGL--KPDVYTYTTIIGALCQSKELDRAHSL----------LQE 555

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           M        ++   + +  L++G C   +++  + L + +    + PN  TYN L++  C
Sbjct: 556 MLDKG----IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC 611

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
            +  M  T        ++K + S  + P+  TYNILI   CK   +         ++   
Sbjct: 612 IEKNMKSTTE------IYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKG 665

Query: 390 FTPDAVTFTSLIKILEINSFFRQV 413
           F   A ++ +LI++L     F + 
Sbjct: 666 FRLTASSYNALIRLLNKKKKFTEA 689



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 119/295 (40%), Gaps = 27/295 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  V + M+  R + P V ++  L   L K         L   +   GL  + +TYN L
Sbjct: 443 EAFLVHNKMVQKRVT-PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSL 501

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK G +      +  +  +   PD  T+T++I  LC    +  A +L  ++   G 
Sbjct: 502 INGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGI 561

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           +  + TYN L+NG C +G       L E M   N        P+  TY++++   C E  
Sbjct: 562 KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN------IHPNTTTYNSLMKQYCIEKN 615

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                    M S + + K      +V  +     +  LI G CK   +K A      +  
Sbjct: 616 ---------MKSTTEIYKGMLSQEVVPNEN---TYNILIKGHCKARNMKEALYFHSEMIE 663

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF--PDLYTYNI 364
            G      +YN LIR L      ++ K +     LF+++    L   PD+Y + I
Sbjct: 664 KGFRLTASSYNALIRLL------NKKKKFTEARRLFEKMRKERLTAEPDVYNFYI 712



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LC++  L  A +LFQ LP      N  +YNIL++ LC  G++ +         LF  + S
Sbjct: 233 LCRLP-LDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQ------LFDEMAS 281

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               PD+ TY I+++ +C +  + +   +   +       + V +TS+I +L
Sbjct: 282 P---PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALL 330


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 146/310 (47%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC E+++ +A  LF ++ V     +  T+ TLI+G C+ G   
Sbjct: 205 ASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+                  N +  
Sbjct: 265 LAMEIYKQMLSQS------LLPDLITYNTLIYGLCKK------------GDLKQANDLID 306

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  +Q   + +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 307 EMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 366

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 367 RSVDAEK-------MLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 419

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 420 PSVVTYNVLM 429



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 129/281 (45%), Gaps = 24/281 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V S+N L     +    D    L   +  +G+ PD YTY++LIN  CK  ++     
Sbjct: 174 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANK 233

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L     P+ VTFT+LI   C   R+  A  ++ ++       D+ TYNTLI GLC
Sbjct: 234 LFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLC 293

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A +L +EM+          +PD ITY+T+IDG CKE             +F  
Sbjct: 294 KKGDLKQANDLIDEMSMKG------LQPDKITYTTLIDGCCKEG--------DLDTAFEH 339

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +M        ++   + +  LI GLC+  +   A ++ + +   GL P+  TY ++I 
Sbjct: 340 RKRMI----QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIIN 395

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
             C  G + +         L K +   G  P + TYN+L+N
Sbjct: 396 EFCKKGDVWKGSK------LLKEMQRDGHVPSVVTYNVLMN 430



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 28/304 (9%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L K K++  V   ++ +   G     Y +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V++ +L+        + E   L + +   G + DV+TY+ LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFD 236

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM            P+ +T++T+IDG CK  G  +               M  Y  ++  
Sbjct: 237 EM------LVKALVPNGVTFTTLIDGHCKN-GRVDL-------------AMEIYKQMLSQ 276

Query: 280 QCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
             L   + +  LI GLCK   LK A +L   +   GL P+ +TY  LI G C +G +D  
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLD-- 334

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
               T F   KR+    +  D   Y  LI+  C+ GR      +   +L     PDA T+
Sbjct: 335 ----TAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTY 390

Query: 398 TSLI 401
           T +I
Sbjct: 391 TMII 394



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 56/124 (45%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++M+  +P   ++  L     K    DT     KR+    +  D   Y  LI+  C+ GR
Sbjct: 308 MSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 367

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +L  +L     PDA T+T +I + C +  + + + L  +++  G    V TYN 
Sbjct: 368 SVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNV 427

Query: 201 LING 204
           L+NG
Sbjct: 428 LMNG 431



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 274 FPLVRVQCLCLNFLC---LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
           + L R   LC+ F     +++ L K+   K+    ++ +   G   ++  +NIL+   C 
Sbjct: 95  YRLTRENKLCVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCK 154

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
           DG +   +       +F  +   GL P + +YN L+N + ++G +  GF +   +L S  
Sbjct: 155 DGDIRVAQS------VFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGV 208

Query: 391 TPDAVTFTSLI 401
            PD  T++ LI
Sbjct: 209 QPDVYTYSVLI 219


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 144/310 (46%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 127 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 186

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            +   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 187 ANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVD 246

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ +++ M + +        PD ITY+T+I GLCK              S   L    F
Sbjct: 247 LAMEIYKRMLSQS------LLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKF 300

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L  A +  + + +  +  + V Y  LI GLC +G
Sbjct: 301 ------------TYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEG 348

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           Q +D  K       + + + S GL PD+ TY ++IN FCK G V  G  +   +  +   
Sbjct: 349 QSVDAEK-------MLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHA 401

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 402 PSVVTYNVLM 411



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 128/281 (45%), Gaps = 24/281 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V S+N L     +    D    L   +   G+ PD YTY++LIN  CK  ++     
Sbjct: 156 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANE 215

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L     P+ VTFT+LI   C   R+  A  ++ ++       D+ TYNTLI GLC
Sbjct: 216 LFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLC 275

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A +L +EM+          +PD  TY+T+IDG CKE             +F  
Sbjct: 276 KNGDLKQAHDLIDEMSMKG------LKPDKFTYTTLIDGCCKEG--------DLDTAFKH 321

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +M        ++   + +  LI GLC+  +   A ++ + +   GL P++ TY ++I 
Sbjct: 322 RKRMI----QENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIIN 377

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
             C  G + +         L K +   G  P + TYN+L+N
Sbjct: 378 EFCKKGDVWKGSK------LLKEMQRNGHAPSVVTYNVLMN 412



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 191 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAME 250

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  R+L     PD +T+ +LI  LC    + +A  L  ++ + G + D FTY TLI+G C
Sbjct: 251 IYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCC 310

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 311 KEGDLDTAFKHRKRMIQEN------IRLDDVAYTALISGLCQEGQSVD------------ 352

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G  P+VVTYN+L+ 
Sbjct: 353 AEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMN 412

Query: 327 G 327
           G
Sbjct: 413 G 413



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 6/125 (4%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L++G  ++  L     L  ++   G+ P+V TY++LI GLC + +MD+         LF 
Sbjct: 165 LMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANE------LFD 218

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            +   GL P+  T+  LI+  CK GRV     I+ R+L     PD +T+ +LI  L  N 
Sbjct: 219 EMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNG 278

Query: 409 FFRQV 413
             +Q 
Sbjct: 279 DLKQA 283



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+ +   P + ++N L   L K         L   +++ GL PD++TY  LI
Sbjct: 248 AMEIYKRMLS-QSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 306

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E + ++A  +  ++   G +
Sbjct: 307 DGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLK 366

Query: 193 LD-----------------------------------VFTYNTLING 204
            D                                   V TYN L+NG
Sbjct: 367 PDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 413



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 95  MLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 148

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI------- 401
            +   GL P + +YN L+N + ++G +  GF +   +L +   PD  T++ LI       
Sbjct: 149 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKES 208

Query: 402 KILEINSFFRQV 413
           K+ + N  F ++
Sbjct: 209 KMDDANELFDEM 220


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 149/361 (41%), Gaps = 51/361 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  +FD M     S P V ++ I+          +T + L   +   GL  +   Y  
Sbjct: 270 KDAHQLFDEM----ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTS 325

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I   C  G+VS    V+  ++      DA  FT+++   C +  +  A   F +++  G
Sbjct: 326 VIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRG 385

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  TY  LINGLCR G    A  + +EM +   +       DA+TY+ +IDG CK  
Sbjct: 386 LAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDV------DAVTYTVLIDGYCKVG 439

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                       +F   NKM       RV    + +  L DGLCK   +  A EL   + 
Sbjct: 440 --------KMTEAFLVHNKMV----QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMC 487

Query: 311 RAGLMPNVVTYNILIRGLCNDG----------QMDE-------------------TKHYE 341
             GL  N+ TYN LI GLC  G           MDE                   +K  +
Sbjct: 488 SKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELD 547

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               L + +   G+ P + TYN+L+N FC  GRV  G  +   +L     P+  T+ SL+
Sbjct: 548 RAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLM 607

Query: 402 K 402
           K
Sbjct: 608 K 608



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 154/324 (47%), Gaps = 28/324 (8%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++  L   L +         + + +   GL  D  TY +LI+ +CK+G+++  F+V  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           ++   TP+ VT+T+L   LC +  +  A  L  ++   G EL++FTYN+LINGLC+ G+ 
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNK 269
             A+    +M     E G+  +PD  TY+TII  LC  KE   A+ L          L +
Sbjct: 512 EQAMRTMIDM----DEAGL--KPDVYTYTTIIGALCQSKELDRAHSL----------LQE 555

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           M        ++   + +  L++G C   +++  + L + +    + PN  TYN L++  C
Sbjct: 556 MLDKG----IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC 611

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
            +  M  T        ++K + S  + P+  TYNILI   CK   +         ++   
Sbjct: 612 IEKNMKSTTE------IYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKG 665

Query: 390 FTPDAVTFTSLIKILEINSFFRQV 413
           F   A ++ +LI++L     F + 
Sbjct: 666 FRLTASSYNALIRLLNKKKKFTEA 689



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 118/295 (40%), Gaps = 27/295 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  V + M+  R + P V ++  L   L K         L   +   GL  + +TYN L
Sbjct: 443 EAFLVHNKMVQKRVT-PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSL 501

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK G +      +  +  +   PD  T+T++I  LC    +  A +L  ++   G 
Sbjct: 502 INGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGI 561

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           +  + TYN L+NG C +G       L E M   N        P+  TY++++   C E  
Sbjct: 562 KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN------IHPNTTTYNSLMKQYCIEKN 615

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                    M S + + K      +V  +     +  LI G CK   +K A      +  
Sbjct: 616 ---------MKSTTEIYKGMLSQEVVPNEN---TYNILIKGHCKARNMKEALYFHSEMIE 663

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF--PDLYTYNI 364
            G      +YN LIR L    +  E +       LF+++    L   PD+Y + I
Sbjct: 664 KGFRLTASSYNALIRLLNKKKKFTEARR------LFEKMRKDRLTAEPDVYNFYI 712



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LC++  L  A +LFQ LP      N  +YNIL++ LC  G++ +         LF  + S
Sbjct: 233 LCRLP-LDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQ------LFDEMAS 281

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               PD+ TY I+++ +C +  + +   +   +       + V +TS+I +L
Sbjct: 282 P---PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALL 330


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 149/361 (41%), Gaps = 51/361 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  +FD M     S P V ++ I+          +T + L   +   GL  +   Y  
Sbjct: 270 KDAHQLFDEM----ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTS 325

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I   C  G+VS    V+  ++      DA  FT+++   C +  +  A   F +++  G
Sbjct: 326 VIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRG 385

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  TY  LINGLCR G    A  + +EM +   +       DA+TY+ +IDG CK  
Sbjct: 386 LAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDV------DAVTYTVLIDGYCKVG 439

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                       +F   NKM       RV    + +  L DGLCK   +  A EL   + 
Sbjct: 440 --------KMTEAFLVHNKMV----QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMC 487

Query: 311 RAGLMPNVVTYNILIRGLCNDG----------QMDE-------------------TKHYE 341
             GL  N+ TYN LI GLC  G           MDE                   +K  +
Sbjct: 488 SKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELD 547

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               L + +   G+ P + TYN+L+N FC  GRV  G  +   +L     P+  T+ SL+
Sbjct: 548 RAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLM 607

Query: 402 K 402
           K
Sbjct: 608 K 608



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 154/324 (47%), Gaps = 28/324 (8%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++  L   L +         + + +   GL  D  TY +LI+ +CK+G+++  F+V  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           ++   TP+ VT+T+L   LC +  +  A  L  ++   G EL++FTYN+LINGLC+ G+ 
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNK 269
             A+    +M     E G+  +PD  TY+TII  LC  KE   A+ L          L +
Sbjct: 512 EQAMRTMIDM----DEAGL--KPDVYTYTTIIGALCQSKELDRAHSL----------LQE 555

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           M        ++   + +  L++G C   +++  + L + +    + PN  TYN L++  C
Sbjct: 556 MLDKG----IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYC 611

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
            +  M  T        ++K + S  + P+  TYNILI   CK   +         ++   
Sbjct: 612 IEKNMKSTTE------IYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKG 665

Query: 390 FTPDAVTFTSLIKILEINSFFRQV 413
           F   A ++ +LI++L     F + 
Sbjct: 666 FRLTASSYNALIRLLNKKKKFTEA 689



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 118/295 (40%), Gaps = 27/295 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  V + M+  R + P V ++  L   L K         L   +   GL  + +TYN L
Sbjct: 443 EAFLVHNKMVQKRVT-PNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSL 501

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK G +      +  +  +   PD  T+T++I  LC    +  A +L  ++   G 
Sbjct: 502 INGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGI 561

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           +  + TYN L+NG C +G       L E M   N        P+  TY++++   C E  
Sbjct: 562 KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN------IHPNTTTYNSLMKQYCIEKN 615

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                    M S + + K      +V  +     +  LI G CK   +K A      +  
Sbjct: 616 ---------MKSTTEIYKGMLSQEVVPNEN---TYNILIKGHCKARNMKEALYFHSEMIE 663

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF--PDLYTYNI 364
            G      +YN LIR L    +  E +       LF+++    L   PD+Y + I
Sbjct: 664 KGFRLTASSYNALIRLLNKKKKFTEARR------LFEKMRKERLTAEPDVYNFYI 712



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 14/112 (12%)

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LC++  L  A +LFQ LP      N  +YNIL++ LC  G++ +         LF  + S
Sbjct: 233 LCRLP-LDEAVQLFQELPEK----NTCSYNILLKALCTAGRIKDAHQ------LFDEMAS 281

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               PD+ TY I+++ +C +  + +   +   +       + V +TS+I +L
Sbjct: 282 P---PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALL 330


>gi|255660978|gb|ACU25658.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 373

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 149/316 (47%), Gaps = 38/316 (12%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFN +   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNXMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +     DA  ++++I  LC E+ +  A ++   +   GC+ +V  YNTLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        + C P  ITY+T+I+GLCK                   NK
Sbjct: 179 KFEDAIRVFREMGT------MHCSPTIITYNTLINGLCK-------------------NK 213

Query: 270 M-AFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
           M    + LV+      +    + +  L+ GLC    ++ A +L+  +   G  P+V  +N
Sbjct: 214 MFGEAYNLVKELLDKGLDPGVITYSMLMXGLCLDHXVERALQLWNQVTSKGFKPDVQMHN 273

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           ILI GLC+ G+M      +    L   +N     P+L ++N L+  F K G + +  VI+
Sbjct: 274 ILIHGLCSVGKM------QLALSLXFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIW 327

Query: 383 GRILPSCFTPDAVTFT 398
            RIL +   PD +++ 
Sbjct: 328 ARILRNGLEPDIISYN 343



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 144/326 (44%), Gaps = 34/326 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T + IL     K  + D  L + +     G   D + Y+ 
Sbjct: 76  DEVISIWELMKESGFVEDSIT-YGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+   + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A NL +E+ +         +P  ITYS ++ GLC + 
Sbjct: 195 CSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKG------LDPGVITYSMLMXGLCLDH 248

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                L       ++ +    F  P V++  +      LI GLC + K+++A  L   + 
Sbjct: 249 XVERALQL-----WNQVTSKGFK-PDVQMHNI------LIHGLCSVGKMQLALSLXFDMN 296

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R    PN+V++N L+ G   DG +          +++ R+   GL PD+ +YNI +   C
Sbjct: 297 RWKCAPNLVSHNTLMEGFYKDGDI------RNALVIWARILRNGLEPDIISYNITLEGLC 350

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVT 396
              R+S   +         F  DAVT
Sbjct: 351 SCNRISDAIL---------FLHDAVT 367



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 138/300 (46%), Gaps = 29/300 (9%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFE-LWEMMGSEGNRSVSSFNXM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++G C+ G+   +L++ E MA   G
Sbjct: 66  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE-MAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCL 284
             GV+   DA  YS +I+GLCKEA        +   + S LN M  +   P V V     
Sbjct: 125 --GVL---DAFAYSAMINGLCKEA--------NLDRAVSVLNGMIKSGCKPNVHV----- 166

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  LI+GL   SK + A  +F+ +      P ++TYN LI GLC      + K +   +
Sbjct: 167 -YNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLC------KNKMFGEAY 219

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L K L   GL P + TY++L+   C    V     ++ ++    F PD      LI  L
Sbjct: 220 NLVKELLDKGLDPGVITYSMLMXGLCLDHXVERALQLWNQVTSKGFKPDVQMHNILIHGL 279



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 111/266 (41%), Gaps = 25/266 (9%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV + +++      ++I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFELWEMMGSEG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     ++++E M     E G V   D+ITY  ++ G CK       
Sbjct: 60  SSFNXMMRGLFDNGKVDEVISIWELMK----ESGFV--EDSITYGILVHGFCKNGYIDKS 113

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L    MA        AF +              +I+GLCK + L  A  +   + ++G  
Sbjct: 114 LHVLEMAEQKGGVLDAFAYS------------AMINGLCKEANLDRAVSVLNGMIKSGCK 161

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           PNV  YN LI GL           +E    +F+ + +    P + TYN LIN  CK    
Sbjct: 162 PNVHVYNTLINGLVG------ASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNKMF 215

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
              + +   +L     P  +T++ L+
Sbjct: 216 GEAYNLVKELLDKGLDPGVITYSMLM 241


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 154/342 (45%), Gaps = 66/342 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ VF++M  +   +P + +  +L   LAK +  + V  ++K++   G+ P+ + +N+
Sbjct: 144 QDAIQVFEHM-RVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNV 202

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G V     +L  +      PD  T+ +LI   C +    EA  +  ++   G
Sbjct: 203 LIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGG 262

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ TYN+LI G CR G    AL LF E+ NG         P+ +TY+T+IDG C   
Sbjct: 263 VSPDIVTYNSLIYGFCREGRMREALRLFREI-NG-------ATPNHVTYTTLIDGYC--- 311

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                                       +++ L+ A  L + + 
Sbjct: 312 --------------------------------------------RVNDLEEALRLREVME 327

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL P VVTYN ++R LC +G++ +         L   ++   + PD  T N LIN +C
Sbjct: 328 VEGLHPGVVTYNSILRKLCEEGKIKDANR------LLNEMSERKVEPDNVTCNTLINAYC 381

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----KILEINS 408
           KIG + S   +  ++L +   PD  TF +LI    K+ E++S
Sbjct: 382 KIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDS 423



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 35/176 (19%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R   P   + N L     K     + + + K++   GL PD++T+  LI+ FCK+  
Sbjct: 361 MSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHE 420

Query: 141 VSHGFVVLGRILRSCFTP-----------------------------------DAVTFTS 165
           V      L  +L + F+P                                   D   + +
Sbjct: 421 VDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRA 480

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           LI+ LC   +I  A  +FT ++  G + D   Y +L     + G  I A ++ +EM
Sbjct: 481 LIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEM 536



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 6/162 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++N +   L +         L   ++   + PD  T N LIN +CK+G +     
Sbjct: 332 HPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMK 391

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V  ++L +   PD  TF +LI   C    +  A     ++   G      TY+ L++   
Sbjct: 392 VKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYY 451

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
              +    + L +E++   G F      D   Y  +I  LCK
Sbjct: 452 DQDNKEAVIRLPDELSR-KGLF-----VDISVYRALIRRLCK 487


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 154/342 (45%), Gaps = 66/342 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ VF++M  +   +P + +  +L   LAK +  + V  ++K++   G+ P+ + +N+
Sbjct: 144 QDAIQVFEHM-RVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNV 202

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G V     +L  +      PD  T+ +LI   C +    EA  +  ++   G
Sbjct: 203 LIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGG 262

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ TYN+LI G CR G    AL LF E+ NG         P+ +TY+T+IDG C   
Sbjct: 263 VSPDIVTYNSLIYGFCREGRMREALRLFREI-NG-------ATPNHVTYTTLIDGYC--- 311

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                                       +++ L+ A  L + + 
Sbjct: 312 --------------------------------------------RVNDLEEALRLREVME 327

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL P VVTYN ++R LC +G++ +         L   ++   + PD  T N LIN +C
Sbjct: 328 VEGLHPGVVTYNSILRKLCEEGKIKDANR------LLNEMSERKVEPDNVTCNTLINAYC 381

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----KILEINS 408
           KIG + S   +  ++L +   PD  TF +LI    K+ E++S
Sbjct: 382 KIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDS 423



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 35/176 (19%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R   P   + N L     K     + + + K++   GL PD++T+  LI+ FCK+  
Sbjct: 361 MSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHE 420

Query: 141 VSHGFVVLGRILRSCFTP-----------------------------------DAVTFTS 165
           V      L  +L + F+P                                   D   + +
Sbjct: 421 VDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRA 480

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           LI+ LC   +I  A  +FT ++  G + D   Y +L     + G  I A ++ +EM
Sbjct: 481 LIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEM 536



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 6/162 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++N +   L +         L   ++   + PD  T N LIN +CK+G +     
Sbjct: 332 HPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMK 391

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V  ++L +   PD  TF +LI   C    +  A     ++   G      TY+ L++   
Sbjct: 392 VKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYY 451

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
              +    + L +E++   G F      D   Y  +I  LCK
Sbjct: 452 DQDNKEAVIRLPDELSR-KGLF-----VDISVYRALIRRLCK 487


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 143/310 (46%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++  A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L    F
Sbjct: 265 LAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 318

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 319 ------------TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 366

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY +++N FCK G V  G  +   +      
Sbjct: 367 RSVDAEK-------MLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHA 419

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 420 PSVVTYNVLM 429



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 133/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 161 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 219

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 220 NGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD  TY+T+IDG CKE   
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG------LKPDKFTYTTLIDGCCKEG-- 331

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 332 ------DLDTAFEHRKRMI----QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 381

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY +++   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 382 GLKPDTGTYTMIVNEFCKKGDVWKGSK------LLKEMQRDGHAPSVVTYNVLMN 430



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 209 QPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L     PD +T+ +LI  LC +  + +A  L  ++ + G + D FTY TLI+G C
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCC 328

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 329 KEGDLDTAFEHRKRMIQEN------IRLDDVAYTALISGLCQEGRSVD------------ 370

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +++  CK   +    +L + + R G  P+VVTYN+L+ 
Sbjct: 371 AEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMN 430

Query: 327 G 327
           G
Sbjct: 431 G 431



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+ +   P + ++N L   L K         L   +++ GL PD++TY  LI
Sbjct: 266 AMEIYKQMLS-QSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 324

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E R ++A  +  ++   G +
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 193 LD-----------------------------------VFTYNTLING 204
            D                                   V TYN L+NG
Sbjct: 385 PDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 166

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 219


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 169/393 (43%), Gaps = 59/393 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           + L VFD M+  R S P V + N +   L         + +++ +   G+ P   TYN L
Sbjct: 182 QCLSVFDKMIKSRLS-PDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTL 240

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ +CK G+V  G  +L  + R    P+ VT+  LI  L  +    +A  L  ++   G 
Sbjct: 241 LDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGL 300

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           ++  +TYN LI G    G    AL+L EEM            P   TY++ I GLCK   
Sbjct: 301 KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKG------ASPTVATYNSFIYGLCKLGR 354

Query: 252 SANFL-GFSCMASFSALNKMAFYFPLVRVQCLCLNFL----------------------C 288
            ++ +   S M + + L  +  Y  L+   C   N +                       
Sbjct: 355 MSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNT 414

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-------DETKH-- 339
           L+DGLC+  +L++A++L   +   G+ P++VTY IL+ G C  G +       DE  H  
Sbjct: 415 LLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEG 474

Query: 340 -------YET-------------VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                  Y T              F L + + + G  PDL  YN++++  CK+G +    
Sbjct: 475 LELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEAS 534

Query: 380 VIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            +  +++     PD VT+TS+I     N   R+
Sbjct: 535 ELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRK 567



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 140/296 (47%), Gaps = 30/296 (10%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
            LSL + + L G  P   TYN  I   CK+GR+S     L  +L +   PD V++ +LI 
Sbjct: 323 ALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIY 382

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
             C    +M+A  LF +LR       + TYNTL++GLCR G   VA  L  EM N     
Sbjct: 383 GYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG--- 439

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN--- 285
                PD +TY+ +++G CK            M S S   +   +F  +  + L L+   
Sbjct: 440 ---IAPDIVTYTILVNGSCK------------MGSLSMAQE---FFDEMLHEGLELDSYA 481

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +   I G  K+     A  L + +   G  P+++ YN+++ GLC  G ++E         
Sbjct: 482 YATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASE------ 535

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L +++ S G+ PD  TY  +I+   + GR+  G  IF  +L    TP  VT+T LI
Sbjct: 536 LLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLI 591



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 141/315 (44%), Gaps = 26/315 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+N L     +  +      LF  L    LFP   TYN L++  C+ G +     +
Sbjct: 372 PDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQL 431

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++     PD VT+T L+   C    +  A   F ++   G ELD + Y T I G  +
Sbjct: 432 KVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELK 491

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            G T  A +L EEM A G         PD I Y+ ++DGLCK       LG    AS   
Sbjct: 492 LGDTSRAFSLQEEMLAKG-------FPPDLIIYNVVVDGLCK-------LGNLEEAS-EL 536

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L KM     +       + +  +I    +  +L+  RE+F  +   GL P+VVTY +LI 
Sbjct: 537 LQKMVSDGVIPDY----VTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIH 592

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G    G++      E  F+ F  +   G+ P++ TYN LIN  CK+ R+   +  F  ++
Sbjct: 593 GHAGKGRL------ERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMV 646

Query: 387 PSCFTPDAVTFTSLI 401
                P+  ++T LI
Sbjct: 647 EKGIFPNKYSYTILI 661



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 169/386 (43%), Gaps = 61/386 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL + + M+ ++ + P V ++N     L K       +     +    L PD  +YN L
Sbjct: 322 EALSLQEEMV-LKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTL 380

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFT-PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           I  +C++G +   F++    LRS +  P  VT+ +L+  LC +  +  A  L  ++   G
Sbjct: 381 IYGYCRLGNLMKAFLLFDE-LRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG 439

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG-------VVCE---------- 233
              D+ TY  L+NG C+ G   +A   F+EM +   E         +V E          
Sbjct: 440 IAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAF 499

Query: 234 ------------PDAITYSTIIDGLCK----EAGSA------------NFLGFSCMASFS 265
                       PD I Y+ ++DGLCK    E  S             +++ ++ +    
Sbjct: 500 SLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAH 559

Query: 266 ALN------KMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
             N      +  FY  L + +    + +  LI G     +L+ A   F  +   G++PNV
Sbjct: 560 LENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNV 619

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           +TYN LI GLC   +MD+  ++      F  +   G+FP+ Y+Y ILIN  C +G     
Sbjct: 620 ITYNSLINGLCKVRRMDQAYNF------FAEMVEKGIFPNKYSYTILINENCNMGNWQEA 673

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKIL 404
             ++ ++L     PD+ T ++L+K L
Sbjct: 674 LSLYKQMLDRGVQPDSCTHSALLKQL 699



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 35/296 (11%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           ++LI  + K   V     V  ++++S  +PD      +++ L  +  + +A  ++  +  
Sbjct: 168 DLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGE 227

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           FG +  + TYNTL++  C+ G     L+L  EM          C P+ +TY+ +I+GL K
Sbjct: 228 FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRG------CAPNDVTYNVLINGLSK 281

Query: 249 EAGSANFLGFSCMASFSALNKMAF-YFPLVR--------VQCLCLN-------------- 285
           +       G       + L   A+ Y PL+          + L L               
Sbjct: 282 KGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVAT 341

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +   I GLCK+ ++  A +    +    L+P+VV+YN LI G C  G + +       FL
Sbjct: 342 YNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMK------AFL 395

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LF  L S  LFP + TYN L++  C+ G +     +   ++     PD VT+T L+
Sbjct: 396 LFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILV 451



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 6/153 (3%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
            +F  +   GL P   TY +LI+     GR+   F+    +      P+ +T+ SLI  L
Sbjct: 570 EIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGL 629

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C   R+ +A   F ++   G   + ++Y  LIN  C  G+   AL+L+++M +       
Sbjct: 630 CKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRG----- 684

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
             +PD+ T+S ++  L K+       G S M +
Sbjct: 685 -VQPDSCTHSALLKQLGKDCKLQAVHGTSTMPT 716



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L   L K +  D   + F  +   G+FP++Y+Y ILIN  C MG       +
Sbjct: 617 PNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSL 676

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT----KLRVFGCELDVFTYNTLIN 203
             ++L     PD+ T ++L+K L  + ++       T    K+ +    +   T  T ++
Sbjct: 677 YKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVHGTSTMPTAKVDLLSQTVGAATALTSVS 736

Query: 204 GLCRTGH 210
            +   GH
Sbjct: 737 SIAENGH 743



 Score = 44.7 bits (104), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +F  + ++ L P+V   N ++R L +   M +         +++ +   G+ P + TYN 
Sbjct: 186 VFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVE------VYRTMGEFGIKPTIVTYNT 239

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           L++ +CK G+V  G  +   +      P+ VT+  LI  L     F Q 
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQA 288


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 143/310 (46%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++  A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L    F
Sbjct: 265 LAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 318

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 319 ------------TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 366

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 367 RSVDAEK-------MLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHA 419

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 420 PSVVTYNVLM 429



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 161 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 219

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 220 NGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD  TY+T+IDG CKE   
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG------LKPDKFTYTTLIDGCCKEG-- 331

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 332 ------DLDTAFEHRKRMI----QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 381

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +         L K ++  G  P + TYN+L+N
Sbjct: 382 GLKPDTGTYTMIINEFCKKGDVWKGSK------LLKEMHRDGHAPSVVTYNVLMN 430



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 209 QPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L     PD +T+ +LI  LC +  + +A  L  ++ + G + D FTY TLI+G C
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCC 328

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 329 KEGDLDTAFEHRKRMIQEN------IRLDDVAYTALISGLCQEGRSVD------------ 370

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G  P+VVTYN+L+ 
Sbjct: 371 AEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMN 430

Query: 327 G 327
           G
Sbjct: 431 G 431



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+ +   P + ++N L   L K         L   +++ GL PD++TY  LI
Sbjct: 266 AMEIYKQMLS-QSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 324

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E R ++A  +  ++   G +
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 193 LD-----------------------------------VFTYNTLING 204
            D                                   V TYN L+NG
Sbjct: 385 PDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 166

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 219


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 152/313 (48%), Gaps = 24/313 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +F +L   L K         LF+++ + GLFP+ YTYN L+N +C  G++   F +   +
Sbjct: 234 TFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEM 293

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                  + VT+ +LI  +C E R+ EA  L  +++      ++ TYNTLI G C  G+ 
Sbjct: 294 RERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNL 353

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A +L +++ + NG       P  +TY+ +I+G  K   + N+ G + +A       ++
Sbjct: 354 DKASSLLDQLKS-NG-----LSPSLVTYNILIEGYSK---AGNWKGVADLAREMEGRGIS 404

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
              P  +V C       LID   ++ +++ A +++ S+ + GL+P+V  Y +LI GLC  
Sbjct: 405 ---P-SKVTC-----TVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMK 455

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G M E+        LF+ +    + P    YN +I+ +CK         +   +      
Sbjct: 456 GNMKESSK------LFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLV 509

Query: 392 PDAVTFTSLIKIL 404
           P+  +++S+I +L
Sbjct: 510 PNVASYSSIIGVL 522



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 154/332 (46%), Gaps = 28/332 (8%)

Query: 71  NEALCVFDYMLNMRPS-RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           ++AL  F+ M++     RP +  FN L G L ++  ++     F  L     F D Y++ 
Sbjct: 110 DKALIFFNEMVDKGLVFRPNI--FNSLLGSLVRSNCFEKAWLFFNELKERVKF-DVYSFG 166

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           I+I   C+ G +   F +LG +     +P+ V +T+LI   C    I  A   F K+   
Sbjct: 167 IMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEM 226

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   + +T+  LINGL + G      +LFE+M   NG F     P+  TY+ +++  C E
Sbjct: 227 GLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKI-NGLF-----PNLYTYNCLMNEYCGE 280

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                  G  C A F   ++M        V+   + +  LI G+C+  ++  A +L   +
Sbjct: 281 -------GKICRA-FDLFDEMRER----GVEANVVTYNTLIGGMCREERVWEAEKLVDQM 328

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            +A + PN++TYN LI G C+ G +D+         L  +L S GL P L TYNILI  +
Sbjct: 329 KKAAVSPNLITYNTLIGGFCDVGNLDKASS------LLDQLKSNGLSPSLVTYNILIEGY 382

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            K G       +   +     +P  VT T LI
Sbjct: 383 SKAGNWKGVADLAREMEGRGISPSKVTCTVLI 414



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 132/312 (42%), Gaps = 24/312 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V SF I+     +  + D    L   L   GL P+   Y  LI+  CK G +    +   
Sbjct: 162 VYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFD 221

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           ++       +  TFT LI  L  +    +   LF K+++ G   +++TYN L+N  C  G
Sbjct: 222 KMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEG 281

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A +LF+EM     E GV  E + +TY+T+I G+C+E                   K
Sbjct: 282 KICRAFDLFDEMR----ERGV--EANVVTYNTLIGGMCRE------------ERVWEAEK 323

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           +        V    + +  LI G C +  L  A  L   L   GL P++VTYNILI G  
Sbjct: 324 LVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYS 383

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
             G      +++ V  L + +   G+ P   T  +LI+ + ++  +   F I+  +    
Sbjct: 384 KAG------NWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFG 437

Query: 390 FTPDAVTFTSLI 401
             PD   +  LI
Sbjct: 438 LVPDVYVYGVLI 449



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++NIL    +K  ++  V  L + +   G+ P + T  +LI+ + ++  +   F +
Sbjct: 370 PSLVTYNILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQI 429

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + +    PD   +  LI  LC +  + E++ LF  +     E     YNT+I+G C+
Sbjct: 430 YSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCK 489

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             ++  AL L  EM       G+V  P+  +YS+II  LCK+ 
Sbjct: 490 EDNSYRALRLLREMEAK----GLV--PNVASYSSIIGVLCKDG 526



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 56/138 (40%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P   +  +L     + +  +    ++  +   GL PD Y Y +LI+  C  G +  
Sbjct: 401 RGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKE 460

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   +      P  V + ++I   C E     A  L  ++   G   +V +Y+++I 
Sbjct: 461 SSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIG 520

Query: 204 GLCRTGHTIVALNLFEEM 221
            LC+ G    A  L ++M
Sbjct: 521 VLCKDGKWEEAEVLLDKM 538


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 24/310 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           SFN L   L K     +  +++ ++  +G+ P   T+N +IN  CK G+V    +V  +I
Sbjct: 164 SFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKI 223

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            +    PDA T+TSLI   C   ++ +A  +F ++   GC  +  TY+TLINGLC  G  
Sbjct: 224 FQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRI 283

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A+++ EEM     E G+  EP   TY+  I  LC + G  +        + + +  M 
Sbjct: 284 GEAMDMLEEMT----EKGI--EPTVYTYTVPISSLC-DIGRVD-------DAINLVRSMG 329

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
                  VQ     +  +I GL +  K+++A  ++  + + GL+PN VTYN LI  LC +
Sbjct: 330 KKGCSPSVQ----TYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTE 385

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G+      +     +F  +   G   +  TYN +I     +  +    V+F ++L    +
Sbjct: 386 GR------FGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPS 439

Query: 392 PDAVTFTSLI 401
           P  VT+ +LI
Sbjct: 440 PTVVTYNTLI 449



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 149/332 (44%), Gaps = 33/332 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ VF+ ML   PS P V ++N L     K  + +        +  +   PD  TY  L
Sbjct: 425 KAMVVFNKMLKDGPS-PTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCEL 483

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ FCK G++         +L+   +P+  T+T++I   C E +I  A +LF ++   GC
Sbjct: 484 ISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGC 543

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              + TYN +I+GL +      A     +M     E G+  +P+ ITY+++I+GLCK   
Sbjct: 544 SASIETYNAIISGLSKGNRFSEAEKFCAKMT----EQGL--QPNTITYTSLINGLCK--N 595

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSL 309
           +A  L F              +  + +  CL     +  LI GLC+  K+  A  L ++ 
Sbjct: 596 TATNLAFK------------IFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTEN- 642

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G  P + TY+ L+ GLC +G+ +E         L + +   GL P +  Y  L+   
Sbjct: 643 ---GCEPTIDTYSTLVSGLCREGRSNEASQ------LVENMKEKGLSPSMEIYCSLLVAH 693

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK  +V     IF  +    F P    +  LI
Sbjct: 694 CKSLKVDCALEIFNLMAVKGFQPHLFIYKVLI 725



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 141/329 (42%), Gaps = 29/329 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +FD+M     +     ++N +   L      +  + +F ++   G  P   TYN LI
Sbjct: 391 ALKIFDWM-EGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLI 449

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
               K G +++    L  +  S   PD  T+  LI   C   ++  A + F ++   G  
Sbjct: 450 VENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGIS 509

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            + +TY  +I+G C+ G   VAL+LFE M   NG     C     TY+ II GL K    
Sbjct: 510 PNQWTYTAMIDGYCKEGKIDVALSLFERMEE-NG-----CSASIETYNAIISGLSKG--- 560

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                      FS   K         +Q   + +  LI+GLCK +   +A ++F  + + 
Sbjct: 561 ---------NRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKK 611

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
             +PN  TY  LI GLC +G++D            +RL   G  P + TY+ L++  C+ 
Sbjct: 612 NCLPNAHTYTSLIYGLCQEGKVDAA----------ERLTENGCEPTIDTYSTLVSGLCRE 661

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           GR +    +   +     +P    + SL+
Sbjct: 662 GRSNEASQLVENMKEKGLSPSMEIYCSLL 690



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 129/310 (41%), Gaps = 39/310 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  +     K    D  LSLF+R+   G      TYN +I+   K  R S     
Sbjct: 510 PNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKF 569

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++      P+ +T+TSLI  LC  +    A  +F ++    C  +  TY +LI GLC+
Sbjct: 570 CAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQ 629

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  L E   NG       CEP   TYST++ GLC+E  S              L
Sbjct: 630 EGKVDAAERLTE---NG-------CEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGL 679

Query: 268 N-KMAFYFPLVRVQCLCLNFLC----------------------LIDGLCKISKLKIARE 304
           +  M  Y  L+   C  L   C                      LI  LC +S+ + A  
Sbjct: 680 SPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALN 739

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +FQSL +     +++ + +L+ GL  +G  D    +  ++L+  R N T   P L+TY I
Sbjct: 740 IFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKF--LYLMESR-NCT---PSLHTYII 793

Query: 365 LINCFCKIGR 374
           L     K+G+
Sbjct: 794 LARELSKVGK 803


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 150/351 (42%), Gaps = 59/351 (16%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++N +         ++    +FK +    L PD YTYN  I+  CK  R+     
Sbjct: 249 KPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASG 308

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCA---------------------------------- 172
           VL ++L S   P+AVT+ +LI   C                                   
Sbjct: 309 VLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALF 368

Query: 173 -ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
            E RI EA  +  ++R  G E DV TYN  ING CR G+   AL+LF+EM   N      
Sbjct: 369 LEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKN------ 422

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
             P   TY+++ID      G  N +       F    K      ++        F  LID
Sbjct: 423 IRPTVETYTSLIDVF----GKRNRMS-EAEEKFKKSIKEGMLPDIIM-------FNALID 470

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           G C    +  A +L + +  A ++P+ VT+N L++G C + +++E K       L   + 
Sbjct: 471 GHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKK------LLDEMK 524

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             G+ PD  +YN LI+ + K G +     +F  +L   F P  +T+ +LI+
Sbjct: 525 ERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQ 575



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 154/360 (42%), Gaps = 52/360 (14%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  V++ M+ M   +  + +FNI+   L +   +         + + G+ P+  TYN +I
Sbjct: 201 AWFVYEEMVKMN-IKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVI 259

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N +C  G+      +   +      PD  T+ S I  LC E RI EA+ +  KL   G  
Sbjct: 260 NGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLV 319

Query: 193 LDVFTYNTLINGLCRTGH------------------TIVALNLF-------------EEM 221
            +  TYN LI+G C  G                   ++   NL              E+M
Sbjct: 320 PNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDM 379

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
                E GV  EPD +TY+  I+G C+  G+A         + S  ++M        ++ 
Sbjct: 380 IKEMREKGV--EPDVVTYNIQINGYCR-CGNAK-------KALSLFDEMVEK----NIRP 425

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
               +  LID   K +++  A E F+   + G++P+++ +N LI G C +G +D      
Sbjct: 426 TVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDR----- 480

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             F L K +++  + PD  T+N L+  +C+  +V     +   +      PD +++ +LI
Sbjct: 481 -AFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLI 539



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 127/292 (43%), Gaps = 25/292 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A    D M+N R     V ++N+L   L   K  +    + K +   G+ PD  TYNI
Sbjct: 339 DKAFAYRDEMMN-RGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNI 397

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            IN +C+ G       +   ++     P   T+TSLI      +R+ EA   F K    G
Sbjct: 398 QINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEG 457

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+  +N LI+G C  G+   A  L +EM N      VV  PD +T++T++ G C+E 
Sbjct: 458 MLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAK----VV--PDEVTFNTLMQGYCRER 511

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                             K+        ++   +++  LI G  K   +K A E+F  + 
Sbjct: 512 ------------KVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEML 559

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
             G  P ++TYN LI+G    G+ D  +       L + + S G+ PD  TY
Sbjct: 560 SLGFDPTLLTYNALIQGYSKIGEADHAEE------LLREMQSKGITPDDSTY 605



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 135/311 (43%), Gaps = 24/311 (7%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           F++L     + +  D  L     +    + P   T N L++   K+ ++   + V   ++
Sbjct: 150 FDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMV 209

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           +       VTF  +I  LC E +  +A      + V+G + +V TYNT+ING C  G   
Sbjct: 210 KMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFE 269

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A  +F+ M + N       +PD  TY++ I  LCKE       G  C    S L   A 
Sbjct: 270 AASKIFKTMKDKN------LKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNA- 322

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG C    L  A      +   G++ +V TYN+LI  L  + 
Sbjct: 323 -----------VTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEK 371

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           +++E +       + K +   G+ PD+ TYNI IN +C+ G       +F  ++     P
Sbjct: 372 RIEEAED------MIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRP 425

Query: 393 DAVTFTSLIKI 403
              T+TSLI +
Sbjct: 426 TVETYTSLIDV 436



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 84/210 (40%), Gaps = 42/210 (20%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL +FD M+  +  RP V ++  L     K          FK+    G+ PD   +N L
Sbjct: 410 KALSLFDEMVE-KNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNAL 468

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  C  G +   F +L  +  +   PD VTF +L++  C E ++ EA  L  +++  G 
Sbjct: 469 IDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGI 528

Query: 192 E----------------------LDVF-------------TYNTLINGLCRTGHTIVALN 216
           +                      L+VF             TYN LI G  + G    A  
Sbjct: 529 KPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEE 588

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           L  EM +     G+   PD  TY  +I+ +
Sbjct: 589 LLREMQSK----GIT--PDDSTYLYVIEAM 612



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 123/319 (38%), Gaps = 66/319 (20%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYT---YNILINCFCKMGRVSHGF 145
           P  SF+IL   L    H  T   +F  L+L     +  T   +++L++ +C+  +     
Sbjct: 112 PKPSFHILQPIL----HTTTPTVIFNELSLARNRLNVKTTLVFDLLLSAYCQFRKPDEAL 167

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
             L  +  +   P   T  SL+  L   ++I  A  ++ ++     +  + T+N +IN L
Sbjct: 168 ECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINIL 227

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           CR G    A +    M      +GV  +P+ +TY+T+I+                     
Sbjct: 228 CREGKWKKAKDFIGHME----VYGV--KPNVVTYNTVIN--------------------- 260

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                                     G C   K + A ++F+++    L P+  TYN  I
Sbjct: 261 --------------------------GYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFI 294

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
             LC + +++E        +L K L S GL P+  TYN LI+  C  G +   F     +
Sbjct: 295 SRLCKERRIEEASG-----VLCKLLES-GLVPNAVTYNALIDGCCNKGDLDKAFAYRDEM 348

Query: 386 LPSCFTPDAVTFTSLIKIL 404
           +         T+  LI  L
Sbjct: 349 MNRGIVASVFTYNLLIHAL 367



 Score = 44.7 bits (104), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 1/107 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + D M   R  +P   S+N L    +K       L +F  +   G  P   TYN L
Sbjct: 515 EAKKLLDEM-KERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNAL 573

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
           I  + K+G   H   +L  +     TPD  T+  +I+ +     ++E
Sbjct: 574 IQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTNDDLVE 620


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 146/307 (47%), Gaps = 28/307 (9%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           ++  + +   GL PD   Y ++I  FC+ G +S    V   ++     PD VT+ +L+  
Sbjct: 1   MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 60

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
           LC E R+++A  L  ++R  G   D+ T+ TLI+G C  G    AL LF+ M N      
Sbjct: 61  LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR---- 116

Query: 230 VVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
               PD +TY+T+IDG+C++     AN L +  M S          FP        + + 
Sbjct: 117 --LRPDIVTYNTLIDGMCRQGDLDKANDL-WDDMHSREI-------FP------NHVTYS 160

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LID  C+  +++ A      +   G++PN++TYN +I+G C  G + + + +       
Sbjct: 161 ILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKF------L 214

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
           +++    + PDL TYN LI+ + K  ++   F +   +      PD VT+  LI    ++
Sbjct: 215 QKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVH 274

Query: 408 SFFRQVA 414
              ++  
Sbjct: 275 GNVQEAG 281



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 134/306 (43%), Gaps = 24/306 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L   L K +       L   +   G+ PD  T+  LI+ +C  G++     +
Sbjct: 49  PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 108

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L     PD VT+ +LI  +C +  + +A  L+  +       +  TY+ LI+  C 
Sbjct: 109 FDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 168

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A    +EM N     G++  P+ +TY++II G C+    +    F        L
Sbjct: 169 KGQVEDAFGFLDEMINK----GIL--PNIMTYNSIIKGYCRSGNVSKGQKF--------L 214

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            KM     + +V    + +  LI G  K  K+  A +L   + +  + P+VVTYN+LI G
Sbjct: 215 QKMM----VNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLING 270

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
               G + E         +F+++ + G+ PD YTY  +IN     G     F +   +L 
Sbjct: 271 FSVHGNVQEAG------WIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQ 324

Query: 388 SCFTPD 393
             F PD
Sbjct: 325 RGFAPD 330



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 12/186 (6%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +FD MLN R  RP + ++N L   + +    D    L+  ++   +FP+  TY+I
Sbjct: 103 DKALQLFDTMLNQR-LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI 161

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C+ G+V   F  L  ++     P+ +T+ S+IK  C    + +      K+ V  
Sbjct: 162 LIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 221

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL---- 246
              D+ TYNTLI+G  +      A  L   M           +PD +TY+ +I+G     
Sbjct: 222 VSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEK------VQPDVVTYNMLINGFSVHG 275

Query: 247 -CKEAG 251
             +EAG
Sbjct: 276 NVQEAG 281



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 1/150 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A    D M+N +   P + ++N +     ++ +        +++ +  + PD  TYN L
Sbjct: 174 DAFGFLDEMIN-KGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTL 232

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ + K  ++   F +L  + +    PD VT+  LI        + EA  +F K+   G 
Sbjct: 233 IHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGI 292

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           E D +TY ++ING    G++  A  L +EM
Sbjct: 293 EPDRYTYMSMINGHVTAGNSKEAFQLHDEM 322


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 145/329 (44%), Gaps = 38/329 (11%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++ +L   L K    D    +F+ +   G+ PD ++Y +LIN F K+G +     +   +
Sbjct: 594 TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +    TP+ + +  L+   C    I +A  L  ++ V G   +  TY T+I+G C++G  
Sbjct: 654 VEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF---------SCMA 262
             A  LF+EM       G+V  PD+  Y+T++DG C+       +           S  A
Sbjct: 714 AEAFRLFDEMKLK----GLV--PDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTA 767

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFL-----------------CLIDGLCKISKLKIAREL 305
            F+AL    F F    ++   LN L                  +ID LCK   L+ A+EL
Sbjct: 768 PFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKEL 827

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  +  A LMP V+TY  L+ G    G+  E      +F +F    + G+ PD   Y+++
Sbjct: 828 FHQMQNANLMPTVITYTSLLNGYDKMGRRAE------MFPVFDEAIAAGIEPDHIMYSVI 881

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           IN F K G  +   V+  ++       D 
Sbjct: 882 INAFLKEGMTTKALVLVDQMFAKNAVDDG 910



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 137/328 (41%), Gaps = 43/328 (13%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
           S ++ +   G+  D  TY +L+N   K  +V     +   +      PD  ++  LI   
Sbjct: 578 SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGF 637

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
                + +A+++F ++   G   +V  YN L+ G CR+G    A  L +EM+        
Sbjct: 638 SKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG----- 692

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN----- 285
              P+A+TY TIIDG CK    A             L   +F +  +   C  LN     
Sbjct: 693 -LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERA 751

Query: 286 -----------------FLCLIDGLCKISKLKIARELFQSLPRAGL----MPNVVTYNIL 324
                            F  LI+ + K  K ++  E+   L          PN VTYNI+
Sbjct: 752 ITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIM 811

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I  LC +G ++  K       LF ++ +  L P + TY  L+N + K+GR +  F +F  
Sbjct: 812 IDYLCKEGNLEAAKE------LFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDE 865

Query: 385 ILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            + +   PD + ++ +     IN+F ++
Sbjct: 866 AIAAGIEPDHIMYSVI-----INAFLKE 888



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 135/318 (42%), Gaps = 30/318 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V  +  L     +   +   + + K +   G+ PD + YN LI    K  R+     
Sbjct: 449 RPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARS 508

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L  ++ +   P+A T+ + I      S    A     ++R  G   +      LIN  C
Sbjct: 509 FLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYC 568

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +    I A + +  M +  G  G     DA TY+ +++GL K                  
Sbjct: 569 KKEKVIEACSAYRSMVD-QGILG-----DAKTYTVLMNGLFKN---------------DK 607

Query: 267 LNKMAFYFPLVRVQCLC---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           ++     F  +R + +     ++  LI+G  K+  ++ A  +F  +   GL PNV+ YN+
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L+ G C  G++++ K       L   ++  GL P+  TY  +I+ +CK G ++  F +F 
Sbjct: 668 LLGGFCRSGEIEKAKE------LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFD 721

Query: 384 RILPSCFTPDAVTFTSLI 401
            +      PD+  +T+L+
Sbjct: 722 EMKLKGLVPDSFVYTTLV 739



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 158/366 (43%), Gaps = 66/366 (18%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++++L   L K ++ D    L   +   G+    Y Y+  I    K G +     +   +
Sbjct: 314 TYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGM 373

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           + S   P A  + SLI+  C E  + +   L  +++     +  +TY T++ G+C +G  
Sbjct: 374 IASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDL 433

Query: 212 IVALNLFEEM-ANG-----------------NGEFG----VVCE-------PDAITYSTI 242
             A N+ +EM A+G                 N  FG    V+ E       PD   Y+++
Sbjct: 434 DGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSL 493

Query: 243 IDGLCK-----EAGS------------------ANFLGFSCMASFSALNKMAFYFPLVRV 279
           I GL K     EA S                  A   G+   + F++ +K   Y   +R 
Sbjct: 494 IIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADK---YVKEMR- 549

Query: 280 QCLCL--NFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
           +C  L    LC  LI+  CK  K+  A   ++S+   G++ +  TY +L+ GL  + ++D
Sbjct: 550 ECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVD 609

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           + +       +F+ +   G+ PD+++Y +LIN F K+G +     IF  ++    TP+ +
Sbjct: 610 DAEE------IFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVI 663

Query: 396 TFTSLI 401
            +  L+
Sbjct: 664 IYNMLL 669



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 69/390 (17%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G I      EA+ VF   + +    P ++   +L   L +    D    ++K +    +
Sbjct: 159 DGYIAKGYIEEAVFVFSSSMGLELV-PRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNV 217

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT---------------------PDA 160
             D  TY++LI   C+ G V  G  VL +  +   T                     P  
Sbjct: 218 VFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLK 277

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220
            T+  LI  LC   R+ +A +L  ++   G  LD  TY+ LI+GL +  +   A  L  E
Sbjct: 278 YTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 221 MANG-----------------------------NGEFGVVCEPDAITYSTIIDGLCKEAG 251
           M +                              +G       P A  Y+++I+G C+E  
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                G+  +      N +   +           +  ++ G+C    L  A  + + +  
Sbjct: 398 VRQ--GYELLVEMKKRNIVISPY----------TYGTVVKGMCSSGDLDGAYNIVKEMIA 445

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           +G  PNVV Y  LI+    + +  +         + K +   G+ PD++ YN LI    K
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMR------VLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             R+         ++ +   P+A T+ + I
Sbjct: 500 AKRMDEARSFLVEMVENGLKPNAFTYGAFI 529



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 108/290 (37%), Gaps = 57/290 (19%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY------------ 128
           ++++   P   ++  +     K+        LF  + L GL PD + Y            
Sbjct: 688 MSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLND 747

Query: 129 ----------------------NILINCFCKMGRVSHGFVVLGRILRSCF----TPDAVT 162
                                 N LIN   K G+      VL R++   F     P+ VT
Sbjct: 748 VERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVT 807

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE-M 221
           +  +I  LC E  +  A  LF +++       V TY +L+NG  + G       +F+E +
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI 867

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
           A G        EPD I YS II+   KE  +   L          L    F    V   C
Sbjct: 868 AAG-------IEPDHIMYSVIINAFLKEGMTTKAL---------VLVDQMFAKNAVDDGC 911

Query: 282 LCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                 C  L+ G  K+ ++++A ++ +++ R   +P+  T   LI   C
Sbjct: 912 KLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 167/383 (43%), Gaps = 62/383 (16%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYN 129
           + AL + D M   R  +P V  +N L G   K   ++ V+ ++ +L    G  P+  TYN
Sbjct: 210 DHALDLLDEMPRSR-VQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYN 268

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           ++++  CK GR      V  R++ +   PD +T+  LI  LC    +  AA +++++   
Sbjct: 269 VMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKT 328

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEE--------------MANGNGEFGVV---- 231
           G  +D   YN+L+ G C+ G    A   ++               M  G  + G+V    
Sbjct: 329 GLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAI 388

Query: 232 -----------CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV- 279
                      C PD +T+ T+I GLC+        GF+        NK    F   RV 
Sbjct: 389 ELWDLLEKDVACIPDTVTFGTLIHGLCQN-------GFA--------NKAFTIFEEARVS 433

Query: 280 --QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
             Q    ++  +I+GLC + +L  A ++++ + + G  PN   YN LI G C      + 
Sbjct: 434 GKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFC------QV 487

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   ++ ++   G  P + TYN LI+  CK  +      +   ++ + FTPD  T+
Sbjct: 488 YRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTY 547

Query: 398 TSLI-------KILEINSFFRQV 413
            SLI       KI +  S ++Q+
Sbjct: 548 GSLIRGLFSDKKIDDALSIWKQI 570



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 150/333 (45%), Gaps = 25/333 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ ++D +       P   +F  L   L +    +   ++F+   ++G   D ++Y+ 
Sbjct: 385 DEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSS 444

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  C +GR+     V  ++ +    P++  + +LI   C   R  +A  +++K+   G
Sbjct: 445 MINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNG 504

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   V TYNTLI+GLC+      A ++  EM   NG       PD  TY ++I GL  + 
Sbjct: 505 CSPTVITYNTLIDGLCKAEKYQEASSVAREMVE-NG-----FTPDITTYGSLIRGLFSDK 558

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL- 309
              + L         ++ K   Y  L +V  +  N   LI GLC   K+  A  +F  + 
Sbjct: 559 KIDDAL---------SIWKQILYKGL-KVDVMMHNI--LIHGLCSAGKVDEALHVFSDMK 606

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            +    PN+VTYN L+ GL   G +D+         L+  +   GL PD+ +YN  I   
Sbjct: 607 EKKNCPPNLVTYNTLMDGLYETGYIDKAA------TLWTSITEDGLEPDIISYNTRIKGL 660

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           C   R+  G  +   +L     P  +T+  L++
Sbjct: 661 CSCDRIHEGIQLLDEVLSRGIIPTVITWNILVR 693



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 148/351 (42%), Gaps = 35/351 (9%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF---- 122
           +I P+ AL  F  + ++    P + S N L     + + +    + F  L+  G F    
Sbjct: 96  AIMPDAALDAFRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLS-HGAFGRRI 154

Query: 123 -PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+  TYNI++   C  G +     +   + R    PD +T+++L+  L  + R+  A  
Sbjct: 155 APNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALD 214

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L  ++     + DV  YN L+ G  + G     + +++++    G       P+  TY+ 
Sbjct: 215 LLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPG-----ARPNLATYNV 269

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           ++DGLCK               F  + ++        +Q   + +  LI GLC+   +  
Sbjct: 270 MLDGLCK------------FGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDG 317

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL--FPDL 359
           A  ++  + + GL+ +   YN L++G C  G++ E          +K  +S G     +L
Sbjct: 318 AARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEA---------WKFWDSAGFAGLRNL 368

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCF-TPDAVTFTSLIKILEINSF 409
            TYNI+I      G V     ++  +       PD VTF +LI  L  N F
Sbjct: 369 RTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGF 419



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 137/305 (44%), Gaps = 59/305 (19%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ V++ M +    +P    +N L     +       + ++ ++   G  P   TYN L
Sbjct: 457 DAVKVYEKM-DKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTL 515

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK  +      V   ++ + FTPD  T+ SLI+ L ++ +I +A +++ ++   G 
Sbjct: 516 IDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGL 575

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           ++DV  +N LI+GLC  G    AL++F +M          C P+ +TY+T++DGL +   
Sbjct: 576 KVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKN-----CPPNLVTYNTLMDGLYET-- 628

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                G+                                        +  A  L+ S+  
Sbjct: 629 -----GY----------------------------------------IDKAATLWTSITE 643

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL P++++YN  I+GLC+  ++     +E + LL + L S G+ P + T+NIL+    K
Sbjct: 644 DGLEPDIISYNTRIKGLCSCDRI-----HEGIQLLDEVL-SRGIIPTVITWNILVRAVIK 697

Query: 372 IGRVS 376
            G + 
Sbjct: 698 YGPIQ 702


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 145/329 (44%), Gaps = 38/329 (11%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++ +L   L K    D    +F+ +   G+ PD ++Y +LIN F K+G +     +   +
Sbjct: 594 TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +    TP+ + +  L+   C    I +A  L  ++ V G   +  TY T+I+G C++G  
Sbjct: 654 VEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF---------SCMA 262
             A  LF+EM       G+V  PD+  Y+T++DG C+       +           S  A
Sbjct: 714 AEAFRLFDEMKLK----GLV--PDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTA 767

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFL-----------------CLIDGLCKISKLKIAREL 305
            F+AL    F F    ++   LN L                  +ID LCK   L+ A+EL
Sbjct: 768 PFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKEL 827

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  +  A LMP V+TY  L+ G    G+  E      +F +F    + G+ PD   Y+++
Sbjct: 828 FHQMQNANLMPTVITYTSLLNGYDKMGRRAE------MFPVFDEAIAAGIEPDHIMYSVI 881

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           IN F K G  +   V+  ++       D 
Sbjct: 882 INAFLKEGMTTKALVLVDQMFAKNAVDDG 910



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 137/328 (41%), Gaps = 43/328 (13%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
           S ++ +   G+  D  TY +L+N   K  +V     +   +      PD  ++  LI   
Sbjct: 578 SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGF 637

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
                + +A+++F ++   G   +V  YN L+ G CR+G    A  L +EM+        
Sbjct: 638 SKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG----- 692

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN----- 285
              P+A+TY TIIDG CK    A             L   +F +  +   C  LN     
Sbjct: 693 -LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERA 751

Query: 286 -----------------FLCLIDGLCKISKLKIARELFQSLPRAGL----MPNVVTYNIL 324
                            F  LI+ + K  K ++  E+   L          PN VTYNI+
Sbjct: 752 ITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIM 811

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I  LC +G ++  K       LF ++ +  L P + TY  L+N + K+GR +  F +F  
Sbjct: 812 IDYLCKEGNLEAAKE------LFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDE 865

Query: 385 ILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            + +   PD + ++ +     IN+F ++
Sbjct: 866 AIAAGIEPDHIMYSVI-----INAFLKE 888



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 136/318 (42%), Gaps = 30/318 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V  +  L     +   +   + + K +   G+ PD + YN LI    K  R+     
Sbjct: 449 RPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARS 508

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L  ++ +   P+A T+ + I      S    A     ++R  G   +      LIN  C
Sbjct: 509 FLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYC 568

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G  I A + +  M +  G  G     DA TY+ +++GL K                  
Sbjct: 569 KKGKVIEACSAYRSMVD-QGILG-----DAKTYTVLMNGLFKN---------------DK 607

Query: 267 LNKMAFYFPLVRVQCLC---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           ++     F  +R + +     ++  LI+G  K+  ++ A  +F  +   GL PNV+ YN+
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L+ G C  G++++ K       L   ++  GL P+  TY  +I+ +CK G ++  F +F 
Sbjct: 668 LLGGFCRSGEIEKAKE------LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFD 721

Query: 384 RILPSCFTPDAVTFTSLI 401
            +      PD+  +T+L+
Sbjct: 722 EMKLKGLVPDSFVYTTLV 739



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 158/366 (43%), Gaps = 66/366 (18%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++++L   L K ++ D    L   +   G+    Y Y+  I    K G +     +   +
Sbjct: 314 TYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGM 373

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           + S   P A  + SLI+  C E  + +   L  +++     +  +TY T++ G+C +G  
Sbjct: 374 IASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDL 433

Query: 212 IVALNLFEEM-ANG-----------------NGEFG----VVCE-------PDAITYSTI 242
             A N+ +EM A+G                 N  FG    V+ E       PD   Y+++
Sbjct: 434 DGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSL 493

Query: 243 IDGLCK-----EAGS------------------ANFLGFSCMASFSALNKMAFYFPLVRV 279
           I GL K     EA S                  A   G+   + F++ +K   Y   +R 
Sbjct: 494 IIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADK---YVKEMR- 549

Query: 280 QCLCL--NFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
           +C  L    LC  LI+  CK  K+  A   ++S+   G++ +  TY +L+ GL  + ++D
Sbjct: 550 ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVD 609

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           + +       +F+ +   G+ PD+++Y +LIN F K+G +     IF  ++    TP+ +
Sbjct: 610 DAEE------IFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVI 663

Query: 396 TFTSLI 401
            +  L+
Sbjct: 664 IYNMLL 669



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 69/390 (17%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G I      EA+ VF   + +    P ++   +L   L +    D    ++K +    +
Sbjct: 159 DGYIAKEYIEEAVFVFSSSMGLELV-PRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNV 217

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT---------------------PDA 160
             D  TY++LI   C+ G V  G  VL +  +   T                     P  
Sbjct: 218 VFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLK 277

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220
            T+  LI  LC   R+ +A +L  ++   G  LD  TY+ LI+GL +  +   A  L  E
Sbjct: 278 YTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 221 MANG-----------------------------NGEFGVVCEPDAITYSTIIDGLCKEAG 251
           M +                              +G       P A  Y+++I+G C+E  
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                G+  +      N +   +           +  ++ G+C    L  A  + + +  
Sbjct: 398 VRQ--GYELLVEMKKRNIVISPY----------TYGTVVKGMCSSGDLDGAYNIVKEMIA 445

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           +G  PNVV Y  LI+    + +  +         + K +   G+ PD++ YN LI    K
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMR------VLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             R+         ++ +   P+A T+ + I
Sbjct: 500 AKRMDEARSFLVEMVENGLKPNAFTYGAFI 529



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 108/290 (37%), Gaps = 57/290 (19%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY------------ 128
           ++++   P   ++  +     K+        LF  + L GL PD + Y            
Sbjct: 688 MSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLND 747

Query: 129 ----------------------NILINCFCKMGRVSHGFVVLGRILRSCF----TPDAVT 162
                                 N LIN   K G+      VL R++   F     P+ VT
Sbjct: 748 VERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVT 807

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE-M 221
           +  +I  LC E  +  A  LF +++       V TY +L+NG  + G       +F+E +
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI 867

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
           A G        EPD I YS II+   KE  +   L          L    F    V   C
Sbjct: 868 AAG-------IEPDHIMYSVIINAFLKEGMTTKAL---------VLVDQMFAKNAVDDGC 911

Query: 282 LCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                 C  L+ G  K+ ++++A ++ +++ R   +P+  T   LI   C
Sbjct: 912 KLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 150/331 (45%), Gaps = 62/331 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ VF++M  +   RP + +  +L   LAK +  DTV  ++K++   G+  + + YN+
Sbjct: 153 HEAIQVFEHM-RVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNV 211

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G V     VL  +   C  PD  T+ +LI   C +    EA ++  ++ + G
Sbjct: 212 LLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAG 271

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+FTYN+LI G CR G    A+ LF ++ +          P+ +TY+++IDG C   
Sbjct: 272 ISPDIFTYNSLIYGFCREGRMREAVQLFRDIKD--------VTPNHVTYTSLIDGYC--- 320

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                                       +++ L  A  L + + 
Sbjct: 321 --------------------------------------------RVNDLDEALRLKEVMS 336

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL P V+TYN ++R LC  G++ +        +L   ++   + PD  T N LIN +C
Sbjct: 337 EKGLYPTVITYNSILRKLCEGGRLRDAN------ILLNEMSERKIEPDNVTCNTLINAYC 390

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           KIG + S   +  +++ +    D  T+ +LI
Sbjct: 391 KIGDMRSALKVKDKMVGAGLKLDQFTYKALI 421



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 134/345 (38%), Gaps = 87/345 (25%)

Query: 57  CKSSGEGDITS----ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSL 112
           CKS   GD+      ++  E  CVF          P + ++N L     K   +   LS+
Sbjct: 217 CKS---GDVEKAEKVLSEMELKCVF----------PDLFTYNTLISLYCKKGMHYEALSV 263

Query: 113 FKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI----- 167
             R+ + G+ PD +TYN LI  FC+ GR+    V L R ++   TP+ VT+TSLI     
Sbjct: 264 QDRMEMAGISPDIFTYNSLIYGFCREGRMREA-VQLFRDIKDV-TPNHVTYTSLIDGYCR 321

Query: 168 ------------------------------KDLCAESRIMEAAALFTKLRVFGCELDVFT 197
                                         + LC   R+ +A  L  ++     E D  T
Sbjct: 322 VNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVT 381

Query: 198 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANF 255
            NTLIN  C+ G    AL + ++M       G   + D  TY  +I G CK  E   A  
Sbjct: 382 CNTLINAYCKIGDMRSALKVKDKMV------GAGLKLDQFTYKALIHGFCKAKEIDKAKE 435

Query: 256 LGFSCM-ASFSALNKMAFYFPLVRVQC-------------------LCLN---FLCLIDG 292
           L F  M A FS       Y  LV   C                   LC++   +  LI  
Sbjct: 436 LLFGMMDAGFSP--SYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRR 493

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            CKI K+  A+ +   +   G+  + V Y  L  G    G+++ T
Sbjct: 494 FCKIEKIDCAQRVLGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVT 538



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 8/125 (6%)

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           V    L++L ++ G  K++   I  ++F+ +   G  P++    +L+  L  D   D   
Sbjct: 134 VNSHVLSWLVIVYGNSKMTHEAI--QVFEHMRVNGFRPHLHACTVLLNSLAKDRLTD--- 188

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
              TV+ ++K++   G+  +++ YN+L++  CK G V     +   +   C  PD  T+ 
Sbjct: 189 ---TVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYN 245

Query: 399 SLIKI 403
           +LI +
Sbjct: 246 TLISL 250



 Score = 37.7 bits (86), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 28/130 (21%), Positives = 50/130 (38%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++  L     K K  D    L   +   G  P   TY+ L++ +CK         +   +
Sbjct: 416 TYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDEL 475

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +R     D   + +LI+  C   +I  A  +   ++  G   D   Y +L  G  + G  
Sbjct: 476 VRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKGIFGDSVVYTSLAYGYWKVGKV 535

Query: 212 IVALNLFEEM 221
            V  ++ +EM
Sbjct: 536 NVTSDILDEM 545


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 152/328 (46%), Gaps = 28/328 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + + + +   L + + +   L LF  +  +GL PD Y Y  ++   C++        V
Sbjct: 178 PQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREV 237

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +GR+  S       T+   I+ LC   R+ EA  +   L   G   DV TY TL+ GLC+
Sbjct: 238 IGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCK 297

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
               +      EEM N   EFG V  P     S ++DGL K+            ++F  +
Sbjct: 298 ----VEEFEAGEEMMNEMIEFGFV--PSEAAVSNLVDGLRKKGNIG--------SAFDLV 343

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           NK+  +     V      +  LI+ +CK  KL  A  LF ++   GL PN VTY+ILI  
Sbjct: 344 NKVKKF----GVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDS 399

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  G++D   H+        ++   G+   +Y Y+ LI+  CK+G++ +   +F  ++ 
Sbjct: 400 FCKRGKLDVALHF------LGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIA 453

Query: 388 SCFTPDAVTFTSLI----KILEINSFFR 411
           +   P+ V +TSLI    K  E+++ FR
Sbjct: 454 NGLKPNVVIYTSLISGYCKEGELHNAFR 481



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 132/295 (44%), Gaps = 29/295 (9%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           PS   V++   L   L K  +  +   L  ++   G+ P  + YN LIN  CK G++   
Sbjct: 318 PSEAAVSN---LVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEA 374

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             +   +      P+ VT++ LI   C   ++  A     K+   G +  V+ Y++LI+G
Sbjct: 375 ESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISG 434

Query: 205 LCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
            C+ G    A +LF+EM ANG        +P+ + Y+++I G CKE    N        +
Sbjct: 435 HCKLGKLRAAKSLFDEMIANG-------LKPNVVIYTSLISGYCKEGELHNAFRLYHEMT 487

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              ++   +             F  LI GLC  +++  A +LF  +    ++PN VTYN+
Sbjct: 488 GKGISPNTY------------TFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           LI G C +G           F L   +   GL PD YTY  LI+  C  GRVS  
Sbjct: 536 LIEGHCKEGNTVRA------FELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEA 584



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 151/365 (41%), Gaps = 60/365 (16%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +FD +++    RP V  +  +   L + K +     +  R+  +G      TYN+ I
Sbjct: 199 ALHLFDEIVS-SGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFI 257

Query: 133 NCFCKMGRVSH-----------------------------------GFVVLGRILRSCFT 157
              CK  RV                                     G  ++  ++   F 
Sbjct: 258 RGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFV 317

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P     ++L+  L  +  I  A  L  K++ FG    +F YN LIN +C+ G    A +L
Sbjct: 318 PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESL 377

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
           F  M +  G F     P+ +TYS +ID  CK       L F  +   + +   A  +P  
Sbjct: 378 FNNMGH-KGLF-----PNDVTYSILIDSFCKRGKLDVALHF--LGKMTEVGIKATVYP-- 427

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                   +  LI G CK+ KL+ A+ LF  +   GL PNVV Y  LI G C +G++   
Sbjct: 428 --------YSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGEL--- 476

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                 F L+  +   G+ P+ YT+  LI+  C   R++    +FG ++     P+ VT+
Sbjct: 477 ---HNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTY 533

Query: 398 TSLIK 402
             LI+
Sbjct: 534 NVLIE 538



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 154/375 (41%), Gaps = 70/375 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P +  +N L   + K    D   SLF  +   GLFP+  TY+ILI+ FCK G++      
Sbjct: 353 PSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHF 412

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG++           ++SLI   C   ++  A +LF ++   G + +V  Y +LI+G C+
Sbjct: 413 LGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCK 472

Query: 208 TGHTIVALNLFEE-------------------------MANGNGEFGVVCE----PDAIT 238
            G    A  L+ E                         MA  N  FG + E    P+ +T
Sbjct: 473 EGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVT 532

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+ +I+G CKE  +        + +F  L++M     +         +  LI GLC   +
Sbjct: 533 YNVLIEGHCKEGNT--------VRAFELLDEMVEKGLVPDT----YTYRPLISGLCSTGR 580

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET--------------------- 337
           +  ARE    L       N + ++ L+ G C +G++D+                      
Sbjct: 581 VSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSV 640

Query: 338 --------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                   +   ++  L K+++  GL PD   Y  +I+   K G +   F ++  ++   
Sbjct: 641 LIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEG 700

Query: 390 FTPDAVTFTSLIKIL 404
             P+ VT+T+LI  L
Sbjct: 701 CLPNVVTYTALINGL 715



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 140/347 (40%), Gaps = 56/347 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +F  L   L           LF  +    + P+  TYN+LI   CK G     F +
Sbjct: 493 PNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFEL 552

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     PD  T+  LI  LC+  R+ EA      L+    +L+   ++ L++G C+
Sbjct: 553 LDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCK 612

Query: 208 TGHTIVALNLFEEMANGNGEFGVVC-----------------------------EPDAIT 238
            G    AL+   EM        +VC                              PD + 
Sbjct: 613 EGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVL 672

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL----NFLCLIDGLC 294
           Y+T+ID   K AG+                KMAF    + V   CL     +  LI+GLC
Sbjct: 673 YTTMIDANAK-AGNL---------------KMAFGLWDIMVSEGCLPNVVTYTALINGLC 716

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           KI  +  A  L + +  +  +PN  TY   +  L ++G +++      V L        G
Sbjct: 717 KIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLL-------EG 769

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              +  TYNILI  FCK+GR+     +   ++ S  +PD ++++++I
Sbjct: 770 FLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTII 816



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 39/319 (12%)

Query: 106 YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           +++ L  +++ N    F     +++LI  + +  R   G VV+  ++     P   T + 
Sbjct: 130 FESFLDSYRKCN----FSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSG 185

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
           ++  L    +   A  LF ++   G   DV+ Y  ++  LC     I A  +   M +  
Sbjct: 186 VLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSG 245

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN-KMAFYFPLVRVQCLCL 284
                 C+    TY+  I GLCK       +    + S+  L   +  Y  LV   C   
Sbjct: 246 ------CDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVE 299

Query: 285 NFLC----------------------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
            F                        L+DGL K   +  A +L   + + G+ P++  YN
Sbjct: 300 EFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYN 359

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            LI  +C DG++DE +       LF  +   GLFP+  TY+ILI+ FCK G++       
Sbjct: 360 ALINSMCKDGKLDEAES------LFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFL 413

Query: 383 GRILPSCFTPDAVTFTSLI 401
           G++           ++SLI
Sbjct: 414 GKMTEVGIKATVYPYSSLI 432



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 104/256 (40%), Gaps = 21/256 (8%)

Query: 76  VFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           + D +  M     RP    +  +    AK  +      L+  +   G  P+  TY  LIN
Sbjct: 654 IIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALIN 713

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK+G +    ++   +L S   P+  T+   +  L +E  I +A  L   L + G   
Sbjct: 714 GLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVL-LEGFLA 772

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           +  TYN LI G C+ G    A  +   M +          PD I+YSTII   C+     
Sbjct: 773 NTVTYNILIRGFCKLGRIQEAAEVLVNMIDSG------ISPDCISYSTIIYEYCRRGD-- 824

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
             L  +     S LN+       V    +  NF  LI G C   +L  A EL   + R G
Sbjct: 825 --LKEAIKLWESMLNRG------VNPDTVAYNF--LIYGCCVTGELTKAFELRDDMMRRG 874

Query: 314 LMPNVVTYNILIRGLC 329
           + PN  TYN LI G C
Sbjct: 875 VKPNRATYNSLIHGTC 890


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 168/411 (40%), Gaps = 98/411 (23%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + +FN++   L + + +   L+++ ++    L PD  TY ILI+  CK  +     V
Sbjct: 160 KPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALV 219

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +      P+ + ++ ++  LC   +I +A  LF+K+R  GC  D+ TYN L+NG C
Sbjct: 220 LFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFC 279

Query: 207 RTGHTIVALNLFEEMANGNGEFGVV-----------------------------CEPDAI 237
           ++G+   A  L + +       GV+                              +PD +
Sbjct: 280 KSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVM 339

Query: 238 TYSTIIDGLCKEAGSANFL-----------------------GFSCMASFSALNKMAFYF 274
            Y+ +I GL +E      L                       GF  M        +    
Sbjct: 340 LYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRL-- 397

Query: 275 PLVRVQCLCLN--FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
            + +  C   N  +  LI G+CK   +  A+ +F+ + + G +P+VVT+N LI GLC   
Sbjct: 398 EISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKAN 457

Query: 333 QMDETK----HYETV--------------------------------------FLLFKRL 350
           +++E +      E V                                      + L  +L
Sbjct: 458 RLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQL 517

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +G+ PD+ TYNILIN FCK G ++  F +F  +      PD+VT+ +LI
Sbjct: 518 VDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLI 568



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 150/326 (46%), Gaps = 39/326 (11%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  +  L   L + + Y+     ++++    + PD   Y I+I    + GRV+    +LG
Sbjct: 303 VIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLG 362

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      PD + + +LIK  C    + EA +L  ++    C  +  TY+ LI G+C+ G
Sbjct: 363 EMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNG 422

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A ++F+EM        + C P  +T++++I+GLCK    AN L  +         +
Sbjct: 423 LINKAQHIFKEMEK------LGCLPSVVTFNSLINGLCK----ANRLEEA---------R 463

Query: 270 MAFY-FPLVRVQCLCL-------------NFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           + FY   +VR   L L             +   +++ LC+   +  A +L   L  +G++
Sbjct: 464 LLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVL 523

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P++ TYNILI G C  G ++        F LFK +   G  PD  TY  LI+   + GR 
Sbjct: 524 PDIRTYNILINGFCKFGNIN------GAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRN 577

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
                IF +++     P++ T+ +++
Sbjct: 578 EDALEIFEQMVKKGCVPESSTYKTIM 603



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 133/312 (42%), Gaps = 24/312 (7%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
           T  +++ G L K   ++    + + L  + +      +++LI  + + G         G 
Sbjct: 94  TVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGL 153

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +      PD   F  ++  L  +   + A A++ ++       DV TY  LI+GLC+T  
Sbjct: 154 MRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCK 213

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
           T  AL LF+EM +     G++  P+ I YS ++ GLC+         F     FS +   
Sbjct: 214 TQDALVLFDEMTDR----GIL--PNQIIYSIVLSGLCQAKKI-----FDAQRLFSKMRAS 262

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                L+        +  L++G CK   L  A  L Q L + G +  V+ Y  LI GL  
Sbjct: 263 GCNRDLI-------TYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLF- 314

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
                  + YE   + ++++    + PD+  Y I+I    + GRV+    + G +     
Sbjct: 315 -----RARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGL 369

Query: 391 TPDAVTFTSLIK 402
            PD + + +LIK
Sbjct: 370 RPDTICYNALIK 381



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 126/290 (43%), Gaps = 41/290 (14%)

Query: 60  SGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT 119
           S EG +T     EAL +   M   R  RP    +N L        + D   SL   ++  
Sbjct: 349 SQEGRVT-----EALTLLGEMTE-RGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKH 402

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
             FP+ +TY+ILI   CK G ++    +   + +    P  VTF SLI  LC  +R+ EA
Sbjct: 403 DCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEA 462

Query: 180 AALFTKLRVF-----------GCE--LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
             LF ++ +            G +   D+ +   ++  LC +G  + A  L  ++ +   
Sbjct: 463 RLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDS-- 520

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF--YFPLVRVQCLCL 284
             GV+  PD  TY+ +I+G CK  G+ N        +F    +M    + P        +
Sbjct: 521 --GVL--PDIRTYNILINGFCK-FGNIN-------GAFKLFKEMQLKGHMP------DSV 562

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
            +  LIDGL +  + + A E+F+ + + G +P   TY  ++   C +  +
Sbjct: 563 TYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNI 612



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 65/129 (50%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + S  ++   L ++        L  +L  +G+ PD  TYNILIN FCK G ++  F +  
Sbjct: 491 IASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFK 550

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      PD+VT+ +LI  L    R  +A  +F ++   GC  +  TY T++   CR  
Sbjct: 551 EMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCREN 610

Query: 210 HTIVALNLF 218
           +  +AL+++
Sbjct: 611 NISLALSVW 619



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++NIL     K  + +    LFK + L G  PD  TY  LI+   + GR      +
Sbjct: 524 PDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEI 583

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK-LRVF 189
             ++++    P++ T+ +++   C E+ I  A +++ K LR F
Sbjct: 584 FEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDF 626


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 150/350 (42%), Gaps = 50/350 (14%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           +  +P   +F IL   L ++   +    L  R+   G  PD   YN LI+ + K      
Sbjct: 4   KSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQ 63

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
            F  L  ++++   P  VT+T+++  LC   R  +A  L  ++R  GC  +++TYN ++ 
Sbjct: 64  AFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVE 123

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GLC       A  + EEMA   G F     PD +TY++ I GLCK               
Sbjct: 124 GLCEERKLDEAKKMLEEMAV-RGYF-----PDVVTYNSFIKGLCK--------------- 162

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              +++   +   + V    +++  +I+GLCK   L  A  +   +   G  P+VVTY+ 
Sbjct: 163 CDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSS 222

Query: 324 LIRGLCNDGQMDETK----------------HYETVFLLFKRLNST-------------G 354
           LI G C  G+++                    Y ++     RL                G
Sbjct: 223 LIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRG 282

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             PD+ +YN  I+  CK  RV     +F R++    TP+A +++ L++ L
Sbjct: 283 FTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEEL 332



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 156/354 (44%), Gaps = 47/354 (13%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ + D ML +   RP + ++N L G L +  H      +   +   G  PD  +YN  I
Sbjct: 236 AMGLLDSMLKL-GCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACI 294

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK  RV     V  R++    TP+A +++ L+++LC +  + +A  L  + R     
Sbjct: 295 DGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQI 354

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           +D+  Y  L++GLC+ G    A  LF ++ +       +CEPD   Y+ ++D  CK    
Sbjct: 355 VDILLYTVLLDGLCKGGRFDEACALFSKVLDEK-----ICEPDVFFYNVMLDSHCKRRQI 409

Query: 253 ANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLN------------------------FL 287
              L     M   +  N + +    + V  LC++                        + 
Sbjct: 410 DKALQIHKQMLERNCCNVVTWN---ILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYG 466

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L+D +CK  K   A ELF+   + G +P+VVTY+ LI GL ++   +E       +LLF
Sbjct: 467 TLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEA------YLLF 520

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +L       D+  +N +I  + + G    G  +F  ++ S   P+A TF   I
Sbjct: 521 TKL-------DVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEI 567



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 158/345 (45%), Gaps = 33/345 (9%)

Query: 57  CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
           CKS   GD+ S +      + D M N R   P V +++ L     K    +  + L   +
Sbjct: 193 CKS---GDLDSASR-----MLDQMTN-RGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSM 243

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
              G  P+   YN L+    ++G +     +L  + R  FTPD V++ + I  LC   R+
Sbjct: 244 LKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERV 303

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
            +A A+F ++   GC  +  +Y+ L+  LC+      A+ L E+      ++ +V   D 
Sbjct: 304 KKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQ---AREKYQIV---DI 357

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           + Y+ ++DGLCK          +C A FS +       P V        +  ++D  CK 
Sbjct: 358 LLYTVLLDGLCK----GGRFDEAC-ALFSKVLDEKICEPDV------FFYNVMLDSHCKR 406

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            ++  A ++ + +       NVVT+NIL+ GLC D ++ +    ET+ L    +   G  
Sbjct: 407 RQIDKALQIHKQMLERNCC-NVVTWNILVHGLCVDDRLSDA---ETMLLT---MVDEGFI 459

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           PD  TY  L++  CK G+ ++   +F   +     PD VT+++LI
Sbjct: 460 PDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALI 504



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 106/275 (38%), Gaps = 58/275 (21%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL-----------NL- 118
           +EA  +F  +L+ +   P V  +N++     K +  D  L + K++           N+ 
Sbjct: 374 DEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNIL 433

Query: 119 ----------------------TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF 156
                                  G  PD  TY  L++  CK G+ +    +    ++   
Sbjct: 434 VHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGC 493

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
            PD VT+++LI  L  E+   EA  LFTK       LDV  +N +I G    G   + L 
Sbjct: 494 VPDVVTYSALITGLVHENMAEEAYLLFTK-------LDVALWNAMILGYAENGSGDLGLK 546

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           LF E+   +       EP+A T+   I G   +A S   LG      F    K  F+  L
Sbjct: 547 LFVELIESD------VEPNARTFGKEISGKLVKAES---LG-KARGLFDRAVKGGFFPDL 596

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                       LID   K   L+ AR +F S+ +
Sbjct: 597 FVAN-------TLIDVFAKCGDLEEARRIFYSMKQ 624


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 145/329 (44%), Gaps = 38/329 (11%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++ +L   L K    D    +F+ +   G+ PD ++Y +LIN F K+G +     +   +
Sbjct: 594 TYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEM 653

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +    TP+ + +  L+   C    I +A  L  ++ V G   +  TY T+I+G C++G  
Sbjct: 654 VEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF---------SCMA 262
             A  LF+EM       G+V  PD+  Y+T++DG C+       +           S  A
Sbjct: 714 AEAFRLFDEMKLK----GLV--PDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTA 767

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFL-----------------CLIDGLCKISKLKIAREL 305
            F+AL    F F    ++   LN L                  +ID LCK   L+ A+EL
Sbjct: 768 PFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKEL 827

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  +  A LMP V+TY  L+ G    G+  E      +F +F    + G+ PD   Y+++
Sbjct: 828 FHQMQNANLMPTVITYTSLLNGYDKMGRRAE------MFPVFDEAIAAGIEPDHIMYSVI 881

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           IN F K G  +   V+  ++       D 
Sbjct: 882 INAFLKEGMTTKALVLVDQMFAKNAVDDG 910



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 137/328 (41%), Gaps = 43/328 (13%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
           S ++ +   G+  D  TY +L+N   K  +V     +   +      PD  ++  LI   
Sbjct: 578 SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGF 637

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
                + +A+++F ++   G   +V  YN L+ G CR+G    A  L +EM+        
Sbjct: 638 SKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG----- 692

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN----- 285
              P+A+TY TIIDG CK    A             L   +F +  +   C  LN     
Sbjct: 693 -LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERA 751

Query: 286 -----------------FLCLIDGLCKISKLKIARELFQSLPRAGL----MPNVVTYNIL 324
                            F  LI+ + K  K ++  E+   L          PN VTYNI+
Sbjct: 752 ITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIM 811

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I  LC +G ++  K       LF ++ +  L P + TY  L+N + K+GR +  F +F  
Sbjct: 812 IDYLCKEGNLEAAKE------LFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDE 865

Query: 385 ILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            + +   PD + ++ +     IN+F ++
Sbjct: 866 AIAAGIEPDHIMYSVI-----INAFLKE 888



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 136/318 (42%), Gaps = 30/318 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V  +  L     +   +   + + K +   G+ PD + YN LI    K  R+     
Sbjct: 449 RPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARS 508

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L  ++ +   P+A T+ + I      S    A     ++R  G   +      LIN  C
Sbjct: 509 FLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYC 568

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G  I A + +  M +  G  G     DA TY+ +++GL K                  
Sbjct: 569 KKGKVIEACSAYRSMVD-QGILG-----DAKTYTVLMNGLFKN---------------DK 607

Query: 267 LNKMAFYFPLVRVQCLC---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           ++     F  +R + +     ++  LI+G  K+  ++ A  +F  +   GL PNV+ YN+
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L+ G C  G++++ K       L   ++  GL P+  TY  +I+ +CK G ++  F +F 
Sbjct: 668 LLGGFCRSGEIEKAKE------LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFD 721

Query: 384 RILPSCFTPDAVTFTSLI 401
            +      PD+  +T+L+
Sbjct: 722 EMKLKGLVPDSFVYTTLV 739



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 158/366 (43%), Gaps = 66/366 (18%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++++L   L K ++ D    L   +   G+    Y Y+  I    K G +     +   +
Sbjct: 314 TYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGM 373

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           + S   P A  + SLI+  C E  + +   L  +++     +  +TY T++ G+C +G  
Sbjct: 374 IASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDL 433

Query: 212 IVALNLFEEM-ANG-----------------NGEFG----VVCE-------PDAITYSTI 242
             A N+ +EM A+G                 N  FG    V+ E       PD   Y+++
Sbjct: 434 DGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSL 493

Query: 243 IDGLCK-----EAGS------------------ANFLGFSCMASFSALNKMAFYFPLVRV 279
           I GL K     EA S                  A   G+   + F++ +K   Y   +R 
Sbjct: 494 IIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADK---YVKEMR- 549

Query: 280 QCLCL--NFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
           +C  L    LC  LI+  CK  K+  A   ++S+   G++ +  TY +L+ GL  + ++D
Sbjct: 550 ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVD 609

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           + +       +F+ +   G+ PD+++Y +LIN F K+G +     IF  ++    TP+ +
Sbjct: 610 DAEE------IFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVI 663

Query: 396 TFTSLI 401
            +  L+
Sbjct: 664 IYNMLL 669



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 69/390 (17%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G I      EA+ VF   + +    P ++   +L   L +    D    ++K +    +
Sbjct: 159 DGYIAKGYIEEAVFVFSSSMGLELV-PRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNV 217

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT---------------------PDA 160
             D  TY++LI   C+ G V  G  VL +  +   T                     P  
Sbjct: 218 VFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLK 277

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220
            T+  LI  LC   R+ +A +L  ++   G  LD  TY+ LI+GL +  +   A  L  E
Sbjct: 278 YTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 221 MANG-----------------------------NGEFGVVCEPDAITYSTIIDGLCKEAG 251
           M +                              +G       P A  Y+++I+G C+E  
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                G+  +      N +   +           +  ++ G+C    L  A  + + +  
Sbjct: 398 VRQ--GYELLVEMKKRNIVISPY----------TYGTVVKGMCSSGDLDGAYNIVKEMIA 445

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           +G  PNVV Y  LI+    + +  +         + K +   G+ PD++ YN LI    K
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMR------VLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             R+         ++ +   P+A T+ + I
Sbjct: 500 AKRMDEARSFLVEMVENGLKPNAFTYGAFI 529



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 108/290 (37%), Gaps = 57/290 (19%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY------------ 128
           ++++   P   ++  +     K+        LF  + L GL PD + Y            
Sbjct: 688 MSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLND 747

Query: 129 ----------------------NILINCFCKMGRVSHGFVVLGRILRSCF----TPDAVT 162
                                 N LIN   K G+      VL R++   F     P+ VT
Sbjct: 748 VERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVT 807

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE-M 221
           +  +I  LC E  +  A  LF +++       V TY +L+NG  + G       +F+E +
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI 867

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
           A G        EPD I YS II+   KE  +   L          L    F    V   C
Sbjct: 868 AAG-------IEPDHIMYSVIINAFLKEGMTTKAL---------VLVDQMFAKNAVDDGC 911

Query: 282 LCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                 C  L+ G  K+ ++++A ++ +++ R   +P+  T   LI   C
Sbjct: 912 KLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESC 961


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 155/330 (46%), Gaps = 28/330 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL + D ML  R  +P V ++ +L   + K   ++  +++   +   G  P+  TYN++
Sbjct: 160 DALSLLDDMLR-RGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVI 218

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  C+ GRV     +L R+      PD V++T+L+K LCA  R  +   LF ++    C
Sbjct: 219 INGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNC 278

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T++ LI   CR G    A+ + ++M          C  +    + +I+ +CK+  
Sbjct: 279 MPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHE------CATNTTLCNIVINSICKQGR 332

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +        +F  LN M  Y          +++  ++ GLC+  +   A+EL + + R
Sbjct: 333 VDD--------AFKFLNNMGSY----GCNPDTISYTTVLKGLCRAERWNDAKELLKEMVR 380

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
               PN VT+N  I  LC  G +      E   +L +++   G    + TYN L+N FC 
Sbjct: 381 NNCPPNEVTFNTFICILCQKGLI------EQAIMLIEQMQEHGCTVGVVTYNALVNGFCV 434

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G + S   +F R +P    P+ +T+T+L+
Sbjct: 435 QGHIDSALELF-RSMPC--KPNTITYTTLL 461



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 139/338 (41%), Gaps = 32/338 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   S+  L   L  +K +D V  LF  +      P+  T+++LI  FC+ G V     
Sbjct: 244 QPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQ 303

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL ++       +      +I  +C + R+ +A      +  +GC  D  +Y T++ GLC
Sbjct: 304 VLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLC 363

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA-GSANFLGFSCMASFS 265
           R      A  L +EM   N      C P+ +T++T I  LC++       +    M    
Sbjct: 364 RAERWNDAKELLKEMVRNN------CPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHG 417

Query: 266 ALNKMAFYFPLVRVQCL-------------------CLNFLCLIDGLCKISKLKIARELF 306
               +  Y  LV   C+                    + +  L+ GLC   +L  A EL 
Sbjct: 418 CTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDAAAELV 477

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +      PNVVT+N+L+   C  G +DE         L +++   G  P+L TYN L 
Sbjct: 478 AEMLHRDCPPNVVTFNVLVNFFCQKGFLDEA------IELVEQMMEHGCTPNLITYNTLF 531

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +   K         +   ++    +PD +TF+S+I IL
Sbjct: 532 DGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGIL 569



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 112/252 (44%), Gaps = 31/252 (12%)

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           R    PD    T LI++LC   R  +AA +       G  +DVF YNTL+ G CR GH  
Sbjct: 68  RDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLD 127

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A  L   M            PDA TY+ +I  LC     A+ L        S L+ M  
Sbjct: 128 AARRLIGSMP---------VAPDAYTYTPLIRVLCDRGRVADAL--------SLLDDM-- 168

Query: 273 YFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
               +R  C    + +  L++ +CK S  + A  +   +   G  PN+VTYN++I G+C 
Sbjct: 169 ----LRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCR 224

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
           +G++D+ +       L  RL S G  PD  +Y  L+   C   R      +F  ++    
Sbjct: 225 EGRVDDARD------LLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNC 278

Query: 391 TPDAVTFTSLIK 402
            P+ VTF  LI+
Sbjct: 279 MPNEVTFDMLIR 290



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 141/343 (41%), Gaps = 38/343 (11%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           NI+   + K    D        +   G  PD  +Y  ++   C+  R +    +L  ++R
Sbjct: 321 NIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVR 380

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
           +   P+ VTF + I  LC +  I +A  L  +++  GC + V TYN L+NG C  GH   
Sbjct: 381 NNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDS 440

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGS---ANFLGFSCMASFSA 266
           AL LF  M          C+P+ ITY+T++ GLC     +A +   A  L   C  +   
Sbjct: 441 ALELFRSMP---------CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVT 491

Query: 267 LNKMAFYF--------------PLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLP 310
            N +  +F               ++   C    + +  L DG+ K    + A EL   L 
Sbjct: 492 FNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLV 551

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+V+T++ +I      G + +    E    +F      G+ P    YN ++   C
Sbjct: 552 SKGVSPDVITFSSII------GILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLC 605

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           K   + +       ++ +   P+  T+  LI+ L      ++ 
Sbjct: 606 KRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEA 648



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 133/322 (41%), Gaps = 66/322 (20%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC------------------------ 155
           G  PD Y    LI   C+ GR S       R+LR+                         
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDA----ARVLRAAEGSGSPVDVFAYNTLVAGYCRYGH 125

Query: 156 ------------FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
                         PDA T+T LI+ LC   R+ +A +L   +   GC+ +V TY  L+ 
Sbjct: 126 LDAARRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLE 185

Query: 204 GLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA 262
            +C+      A+ + +EM A G       C P+ +TY+ II+G+C+E    +        
Sbjct: 186 AMCKNSGFEQAMAVLDEMRAKG-------CTPNIVTYNVIINGMCREGRVDD-------- 230

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
           +   LN++  Y      Q   +++  L+ GLC   +     ELF  +     MPN VT++
Sbjct: 231 ARDLLNRLFSY----GCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFD 286

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           +LIR  C  G +      E    + +++       +    NI+IN  CK GRV   F   
Sbjct: 287 MLIRFFCRGGMV------ERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFL 340

Query: 383 GRILPSCFTPDAVTFTSLIKIL 404
             +      PD +++T+++K L
Sbjct: 341 NNMGSYGCNPDTISYTTVLKGL 362



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 120/277 (43%), Gaps = 38/277 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FN     L +    +  + L +++   G      TYN L+N FC  G +      
Sbjct: 385 PNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSAL-- 442

Query: 148 LGRILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
              + RS    P+ +T+T+L+  LC   R+  AA L  ++    C  +V T+N L+N  C
Sbjct: 443 --ELFRSMPCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFC 500

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-------- 258
           + G    A+ L E+M     E G  C P+ ITY+T+ DG+ K+  S + L          
Sbjct: 501 QKGFLDEAIELVEQMM----EHG--CTPNLITYNTLFDGITKDCSSEDALELLHGLVSKG 554

Query: 259 ---------SCMASFSALNKMAFYFPL--------VRVQCLCLNFLCLIDGLCKISKLKI 301
                    S +   S  +++     +        +R + L  N + L  GLCK  ++  
Sbjct: 555 VSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILL--GLCKRHEIDN 612

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           A +    +   G MPN  TY ILI GL  +G + E +
Sbjct: 613 AIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQ 649



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 6/167 (3%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +FN+L     +    D  + L +++   G  P+  TYN L +   K      
Sbjct: 483 RDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSED 542

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +L  ++    +PD +TF+S+I  L  E R+ EA  +F   +  G       YN ++ 
Sbjct: 543 ALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILL 602

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           GLC+      A++    M + NG     C P+  TY  +I+GL +E 
Sbjct: 603 GLCKRHEIDNAIDFLAYMVS-NG-----CMPNESTYIILIEGLAREG 643



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 103/241 (42%), Gaps = 24/241 (9%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P +P   ++  L   L   +  D    L   +      P+  T+N+L+N FC+ G +   
Sbjct: 449 PCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEA 508

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             ++ +++    TP+ +T+ +L   +  +    +A  L   L   G   DV T++++I  
Sbjct: 509 IELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGI 568

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-SCMAS 263
           L +      A+ +F  +A   G       P A+ Y+ I+ GLCK     N + F + M S
Sbjct: 569 LSKEDRVEEAIQMF-HLAQDIG-----MRPKALVYNKILLGLCKRHEIDNAIDFLAYMVS 622

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              +   + Y             + LI+GL +   LK A++L   L   G    VV+ N+
Sbjct: 623 NGCMPNESTY-------------IILIEGLAREGLLKEAQDLLSMLCSRG----VVSKNL 665

Query: 324 L 324
           +
Sbjct: 666 I 666



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 286 FLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           +LC  LI  LC+  +   A  + ++   +G   +V  YN L+ G C  G +D  +     
Sbjct: 76  YLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAAR----- 130

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
               + + S  + PD YTY  LI   C  GRV+    +   +L     P+ VT+T L++ 
Sbjct: 131 ----RLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEA 186

Query: 404 LEINSFFRQV 413
           +  NS F Q 
Sbjct: 187 MCKNSGFEQA 196


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 147/310 (47%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 205 ASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ +++ M + +        PD ITY+T+I GLCK+                  N +  
Sbjct: 265 LAMEIYKRMLSQS------LLPDLITYNTLIYGLCKK------------GDLKQANDLID 306

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 307 EMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 366

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +  +   
Sbjct: 367 RSVDAEK-------MLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHV 419

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 420 PSVVTYNVLM 429



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 134/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 161 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLI 219

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C + R+  A  ++ ++      
Sbjct: 220 NGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLL 279

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM           +PD ITY+T+IDG CKE   
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQANDLIDEMVMKG------LKPDKITYTTLIDGCCKEG-- 331

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 332 ------DLDTAFEHRKRMI----QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 381

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 382 GLKPDTGTYTMIINEFCKKGDVWKGSR------LLKEMQRNGHVPSVVTYNVLMN 430



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 53/122 (43%)

Query: 83  MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142
           M+  +P   ++  L     K    DT     KR+    +  D   Y  LI+  C+ GR  
Sbjct: 310 MKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSV 369

Query: 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
               +L  +L     PD  T+T +I + C +  + + + L  +++  G    V TYN L+
Sbjct: 370 DAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLM 429

Query: 203 NG 204
           NG
Sbjct: 430 NG 431



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 166

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLI 219


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 142/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++ +M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMEIYXQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYV 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 129/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKG------LKPDKITYTTLIDGSCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLETAFEYRKRMI----KENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLLKEMQRDGYVPSVVT 418


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 145/341 (42%), Gaps = 41/341 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           PP+   N L   LA+      + SL  R+ +  L    +TY  LIN +C  G +      
Sbjct: 41  PPIRCLNTLLMALARHGMLSDMESLAARMPVRNL----HTYTTLINAYCHAGDLPAAKRH 96

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +LR+   PD+  +TS +   C       A  LF  +   GC    FTY  L+ GLC 
Sbjct: 97  LSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCG 156

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFS 265
            G    A+ +F  M          C PD+  YS ++ GLC    AG A  L    M    
Sbjct: 157 AGMVREAMAVFAGMWPDG------CAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGF 210

Query: 266 ALNKMAFYFPLVRVQCL------------------CL----NFLCLIDGLCKISKLKIAR 303
             N +A Y  L+   C                   CL     +  LI G CK  K++ A 
Sbjct: 211 VPN-VAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAM 269

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            L+  +  AGL PNVVTY  LI+G C++G      H E  F L   + + GL P+ +T  
Sbjct: 270 VLYSRMIEAGLAPNVVTYTTLIQGQCSEG------HLEHAFRLLHSMEACGLAPNEWTCL 323

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +LI+  CK GR+       G ++      + V +TS+I  L
Sbjct: 324 VLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDAL 364



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 162/363 (44%), Gaps = 60/363 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  +N L      T   +  + +FK +   G  P+  TY  LI  FCK G+V    V+
Sbjct: 212 PNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVL 271

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAE---------------------------------- 173
             R++ +   P+ VT+T+LI+  C+E                                  
Sbjct: 272 YSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCK 331

Query: 174 -SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
             RI EA      L   G +++   Y ++I+ LC++G    A NL +++       G V 
Sbjct: 332 HGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITE----GFV- 386

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
            PDA  YS++IDGLC+E    N L    + + S LN M        VQ   + F  LID 
Sbjct: 387 -PDAHMYSSLIDGLCRE----NKL----LEAISLLNDMIE----SGVQANAVPFTILIDK 433

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
             +  +    + +   +  AG+ P+VVTY + IR  C DG+M++ +       +  ++  
Sbjct: 434 HLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAES------MMIQMID 487

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-ILEINSFFR 411
            G+ P+L TYN LI  +  +G VS  F     ++ +   P+  ++T L+  +L+ NS+  
Sbjct: 488 HGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSYHD 547

Query: 412 QVA 414
            VA
Sbjct: 548 LVA 550



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 143/316 (45%), Gaps = 25/316 (7%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           +R P T   +L G L         +++F  +   G  PD + Y+I+++  C  GR     
Sbjct: 141 ARTPFTYAALLQG-LCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAV 199

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +L   +   F P+   + +LI   C+   +  A  +F  ++  GC  +V TY  LI G 
Sbjct: 200 ALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGF 259

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C++G    A+ L+  M     E G+   P+ +TY+T+I G C E    +   F  + S  
Sbjct: 260 CKSGKVERAMVLYSRMI----EAGLA--PNVVTYTTLIQGQCSEGHLEH--AFRLLHSME 311

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           A         L   +  C   L LID LCK  +++ A++   SL + G+  N V Y  +I
Sbjct: 312 ACG-------LAPNEWTC---LVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMI 361

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
             LC  G+ D   +      L +++ + G  PD + Y+ LI+  C+  ++     +   +
Sbjct: 362 DALCKSGKFDGAHN------LMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDM 415

Query: 386 LPSCFTPDAVTFTSLI 401
           + S    +AV FT LI
Sbjct: 416 IESGVQANAVPFTILI 431



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 6/150 (4%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           ++    CL+K    +   S    +    L P    Y  +I C  +M  +      L  ++
Sbjct: 583 YDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMV 642

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           +  + P   ++  +I  LC E     A ++F  +       D   +  LI+GL + G+T 
Sbjct: 643 KRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEYNRDEIAWKILIDGLLQKGNTA 702

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTI 242
               L   M   N      C P +  YS +
Sbjct: 703 DCSRLLSFMEEQN------CRPGSAIYSRL 726


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 171/395 (43%), Gaps = 68/395 (17%)

Query: 47  ASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY 106
           AS     +ER ++    ++  I  ++A  +F  ML  RP  P +  F  +   +AK   +
Sbjct: 41  ASHHHHYRERLRN----ELHCIKFDDAFSLFCEMLQSRPI-PSIVDFTRVLTVIAKMNKF 95

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D V+ L+ ++   G+  D Y++ ILI+CFC+  R+S    +LG++++  F P  VT  SL
Sbjct: 96  DIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSL 155

Query: 167 IKDLCAESRIMEAAALFTKLRVFG-----------------------------------C 191
           +   C  +R  EA +L   +  FG                                    
Sbjct: 156 LNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGI 215

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D  TYNTLI+GL  +G    A  L  +M           +P+ I ++ +ID   KE  
Sbjct: 216 RADAVTYNTLISGLSNSGRWTDAARLLRDMVKRK------IDPNVIFFTALIDTFVKEG- 268

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSL 309
                        + L     Y  ++R   +     +  LI+G C    L  A+ +F  +
Sbjct: 269 -------------NLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM 315

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G  P+VVTYN LI G C      ++K  E    LF  +   GL  D +TYN LI+ +
Sbjct: 316 VSKGCFPDVVTYNTLITGFC------KSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 369

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           C+ G+++    +F R++    +PD VT+  L+  L
Sbjct: 370 CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCL 404



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 152/350 (43%), Gaps = 59/350 (16%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK--------- 137
           RP + +   L     +   +   +SL   ++  G  P+   YN +IN  CK         
Sbjct: 146 RPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALE 205

Query: 138 --------------------------MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
                                      GR +    +L  +++    P+ + FT+LI    
Sbjct: 206 VFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFV 265

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
            E  ++EA  L+ ++       +VFTYN+LING C  G    A  +F+ M +        
Sbjct: 266 KEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG------ 319

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
           C PD +TY+T+I G CK     + +   C  ++  L   AF +              LI 
Sbjct: 320 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYN------------TLIH 367

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           G C+  KL +A+++F  +   G+ P++VTYNIL+  LCN+G++      E   ++ + L 
Sbjct: 368 GYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKI------EKALVMVEDLQ 421

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + +  D+ TYNI+I   C+  ++   + +F  +      PDA+ + ++I
Sbjct: 422 KSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMI 471



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 126/283 (44%), Gaps = 30/283 (10%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK---MGR 140
           R   P V  F  L     K  +     +L+K +    + P+ +TYN LIN FC    +G 
Sbjct: 248 RKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD 307

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
             + F ++  + + CF PD VT+ +LI   C   R+ +   LF ++   G   D FTYNT
Sbjct: 308 AKYMFDLM--VSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 364

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+G C+ G   VA  +F  M     + GV   PD +TY+ ++D LC        L    
Sbjct: 365 LIHGYCQAGKLNVAQKVFNRMV----DCGV--SPDIVTYNILLDCLCNNGKIEKAL---- 414

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                 L K      ++        +  +I GLC+  KLK A  LF+SL R G+ P+ + 
Sbjct: 415 -VMVEDLQKSEMDVDII-------TYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIA 466

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           Y  +I GLC  G   E         L +R+   G  P    Y+
Sbjct: 467 YITMISGLCRKGLQREADK------LCRRMKEDGFMPSERIYD 503



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 9/175 (5%)

Query: 79  YMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           YM ++  S+   P V ++N L     K+K  +  + LF  +   GL  D +TYN LI+ +
Sbjct: 310 YMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 369

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G+++    V  R++    +PD VT+  L+  LC   +I +A  +   L+    ++D+
Sbjct: 370 CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDI 429

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            TYN +I GLCRT     A  LF  +       GV  +PDAI Y T+I GLC++ 
Sbjct: 430 ITYNIIIQGLCRTDKLKEAWCLFRSLTRK----GV--KPDAIAYITMISGLCRKG 478



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A  VF+ M++   S P + ++NIL  CL      +  L + + L  + +  D  TYNI
Sbjct: 376 NVAQKVFNRMVDCGVS-PDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNI 434

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I   C+  ++   + +   + R    PDA+ + ++I  LC +    EA  L  +++  G
Sbjct: 435 IIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDG 494



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 19/139 (13%)

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
           SFS  +    Y   +R +  C+ F       C         E+ QS P    +P++V + 
Sbjct: 37  SFSGASHHHHYRERLRNELHCIKFDDAFSLFC---------EMLQSRP----IPSIVDFT 83

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
              R L    +M++   ++ V  L+ ++ + G+  DLY++ ILI+CFC+  R+S    + 
Sbjct: 84  ---RVLTVIAKMNK---FDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALL 137

Query: 383 GRILPSCFTPDAVTFTSLI 401
           G+++   F P  VT  SL+
Sbjct: 138 GKMMKLGFRPSIVTLGSLL 156


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 151/326 (46%), Gaps = 25/326 (7%)

Query: 78  DYMLNMRPSRPPVTS--FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           D +L+MR     +T+   N +    A+ +  +   ++F  ++  G++PD  TY  +I  +
Sbjct: 195 DMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGY 254

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G V      +  ++   F  D  T T +I   C +S +  A   F K+   G   ++
Sbjct: 255 CRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNL 314

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             Y+++I+GLC+ G    A  L EEM   NG      +P+  T++++I GLCK+  +   
Sbjct: 315 INYSSMISGLCKRGSVKQAFELLEEMVK-NG-----WKPNVYTHTSLIHGLCKKGWTERA 368

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                   F  L +   Y P V        +  +I G CK  KL  A  LF+ +   GL+
Sbjct: 369 FRL-----FLKLIRSDNYKPNVHT------YTAMISGYCKEEKLSRAEMLFERMKEQGLV 417

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           PN  TY  LI G C  G    +K YE    L + +++ G FP+  TYN +++  CK GR 
Sbjct: 418 PNTNTYTTLIDGHCKAGNF--SKAYE----LMELMSNEGFFPNTCTYNSIVDGLCKRGRA 471

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
              F +      +    D VT+T LI
Sbjct: 472 EEAFKLLNTGFQNQIEADGVTYTILI 497



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 150/332 (45%), Gaps = 26/332 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A+  F  +  M  S P + +++ +   L K         L + +   G  P+ YT+  
Sbjct: 296 NRAVWFFHKVTKMGLS-PNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTS 354

Query: 131 LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           LI+  CK G     F +  +++RS  + P+  T+T++I   C E ++  A  LF +++  
Sbjct: 355 LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQ 414

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +  TY TLI+G C+ G+   A  L E M+N  G F     P+  TY++I+DGLCK 
Sbjct: 415 GLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSN-EGFF-----PNTCTYNSIVDGLCKR 468

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
             +          +F  LN   F     +++   + +  LI   CK + +  A      +
Sbjct: 469 GRAEE--------AFKLLN-TGFQ---NQIEADGVTYTILISEQCKRADMNQALVFLNKM 516

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            + G  P++  Y  LI   C    M +++       LF  +   GL P   TY  +I  +
Sbjct: 517 FKVGFQPDIHLYTTLIAAFCRQNMMKDSEK------LFDEVIKLGLAPTKETYTSMICGY 570

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           C+  +VS     F ++      PD++++ +LI
Sbjct: 571 CREKKVSLAVKFFQKMSDHGCAPDSISYGALI 602



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 138/314 (43%), Gaps = 31/314 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  L     K  ++     L + ++  G FP+  TYN +++  CK GR    F +
Sbjct: 418 PNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKL 477

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L    ++    D VT+T LI + C  + + +A     K+   G + D+  Y TLI   CR
Sbjct: 478 LNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCR 537

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 +  LF+E+     + G+   P   TY+++I G C+E   +  + F         
Sbjct: 538 QNMMKDSEKLFDEVI----KLGLA--PTKETYTSMICGYCREKKVSLAVKF--------F 583

Query: 268 NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            KM+ +       C    +++  LI GLCK S+L  AR+L+ ++   GL P  VT   L 
Sbjct: 584 QKMSDH------GCAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLT 637

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
              C      +T+ + +  ++ +RLN       ++T   LI   C   +V+   + F ++
Sbjct: 638 YEYC------KTEDFASAMVILERLNKKLWIRTVHT---LIRKLCCEKKVALAALFFHKL 688

Query: 386 LPSCFTPDAVTFTS 399
           L      D VT  +
Sbjct: 689 LDKEVNVDRVTLAA 702



 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 64/181 (35%)

Query: 288 CLIDGLCKISKLKIAREL-----------------------------------FQSLPRA 312
           C++    +I KLK A ++                                   F  +   
Sbjct: 179 CMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSAR 238

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHY-----ETVFLL--------------------- 346
           G+ P+  TY  +I G C +G + E   +     E  F++                     
Sbjct: 239 GVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRA 298

Query: 347 ---FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
              F ++   GL P+L  Y+ +I+  CK G V   F +   ++ + + P+  T TSLI  
Sbjct: 299 VWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHG 358

Query: 404 L 404
           L
Sbjct: 359 L 359


>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 48/308 (15%)

Query: 108 TVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167
            ++  FK    +G+F D   YNI+++  CK+G+V     +L  +     + D V +T+LI
Sbjct: 366 NLVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLI 425

Query: 168 KDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 227
              C + ++++A  +F +++  G E D+ TYN L+ G  R G    AL L + +    G 
Sbjct: 426 AGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCI----GT 481

Query: 228 FGVVCEPDAITYSTIIDGLC-----KEAGS-ANFLGFSCMASFSALNKMAFYFPLVRVQC 281
            G+  +P++ T++ II+GLC     KEA +  N L   C+ ++SA               
Sbjct: 482 QGL--KPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLENYSA--------------- 524

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM--------PNVVTYNILIRGLCNDGQ 333
                  ++DG CK +  + A ELF  L + G++        PN + Y  LI   C DG 
Sbjct: 525 -------MVDGYCKANFTRKAYELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGD 577

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           M   +      L+F  L   G+ PD+ TY ++IN +C++  +     IF  +      PD
Sbjct: 578 MKRAQ------LVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPD 631

Query: 394 AVTFTSLI 401
            +T+T ++
Sbjct: 632 VITYTVVL 639



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 136/321 (42%), Gaps = 16/321 (4%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S N L   L +    D  +++++ L   GL P+ YTY I I   C+ G       V
Sbjct: 190 PHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDV 249

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +  +   P+AVT ++ I+ LC+  R          LR     +D F Y  +I G C 
Sbjct: 250 FREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCS 309

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-SCMASFSA 266
                 A ++F +M N     G+   PD   Y  +I   CK       +   + M S   
Sbjct: 310 EMKLKEAEDVFIDMVNE----GIA--PDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGI 363

Query: 267 LNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              +   F   R   + L+   +  ++D LCK+ K++ A EL   +    +  +VV Y  
Sbjct: 364 KTNLVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTT 423

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI G C  G++ + K+      +F+ +   G+ PD+ TYNIL+  F + G       +  
Sbjct: 424 LIAGYCLQGKLVDAKN------MFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLD 477

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            I      P++ T   +I+ L
Sbjct: 478 CIGTQGLKPNSATHNRIIEGL 498



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 126/283 (44%), Gaps = 28/283 (9%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           ++L+  + ++G        L +  R  F P  ++   L+  L    +I  A A++  L+ 
Sbjct: 161 DMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKR 220

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   + +TY   I  LCR G+   A+++F EM     E GV   P+A+T ST I+GLC 
Sbjct: 221 LGLNPNDYTYGIFIKALCRKGNFEEAVDVFREME----EAGV--NPNAVTCSTYIEGLCS 274

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
              S   LG+  + +  A N     +P+         +  +I G C   KLK A ++F  
Sbjct: 275 HKRSD--LGYEALRALRAAN-----WPID-----TFAYTAVIRGFCSEMKLKEAEDVFID 322

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETK--HYETV--------FLLFKRLNSTGLFPD 358
           +   G+ P+   Y  LI   C  G + +    H + V           FK    +G+F D
Sbjct: 323 MVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNLVDQFKEFRDSGIFLD 382

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              YNI+++  CK+G+V     +   +     + D V +T+LI
Sbjct: 383 EVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLI 425



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 133/307 (43%), Gaps = 31/307 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ + + M   R S   V    ++ G   + K  D   ++F+ +   G+ PD  TYNIL
Sbjct: 401 EAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAK-NMFEEMKERGIEPDIVTYNIL 459

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +  F + G       +L  I      P++ T   +I+ LC   ++ EA A    L     
Sbjct: 460 VGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCL 519

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN--GEFGVVCEPDAITYSTIIDGLCKE 249
           E     Y+ +++G C+   T  A  LF  ++         +  EP+ I Y  +I   C++
Sbjct: 520 E----NYSAMVDGYCKANFTRKAYELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRD 575

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELF 306
                            + +    F ++  + +    + +  +I+G C+++ L+ AR++F
Sbjct: 576 GD---------------MKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIF 620

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G+ P+V+TY +++ G        +T + +    L+  + + GL PD+ TY  L+
Sbjct: 621 NDMKERGIKPDVITYTVVLDG------HSKTNNLQDAINLYDEMIARGLQPDIVTYTALL 674

Query: 367 NCFCKIG 373
              C  G
Sbjct: 675 PGKCNFG 681



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 17/154 (11%)

Query: 111 SLFKRLNLTGLF--------PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
            LF RL+  G+         P++  Y  LI  FC+ G +    +V   ++    TPD +T
Sbjct: 540 ELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVIT 599

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM- 221
           +T +I   C  + + EA  +F  ++  G + DV TY  +++G  +T +   A+NL++EM 
Sbjct: 600 YTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMI 659

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           A G        +PD +TY+ ++ G C   GS +F
Sbjct: 660 ARG-------LQPDIVTYTALLPGKCN-FGSRHF 685



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 84/226 (37%), Gaps = 33/226 (14%)

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A + FT+L+  G + +V TY  LI  LCR        +L  E+                 
Sbjct: 80  AWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIV---------------- 123

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
                          + LGF   A F  L +            L L    L+    ++  
Sbjct: 124 -----------GSKESVLGFDITALFDVLREGGGEVEGEHSSVLILVLDMLVKAYVRVGM 172

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
              A +      R G +P++++ N L+  L   G++D          +++ L   GL P+
Sbjct: 173 FDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKID------MAVAIYRHLKRLGLNPN 226

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            YTY I I   C+ G       +F  +  +   P+AVT ++ I+ L
Sbjct: 227 DYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGL 272


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 143/316 (45%), Gaps = 24/316 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   L +    D+ L +F  +   G  P+  +YN LI  +C +G       +
Sbjct: 398 PNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSM 457

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L+   TP  VT+  +IK  C       A  +   ++  GC+ D ++Y  LI+G C+
Sbjct: 458 LTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCK 517

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                +A  +F EM +       +C P+ +TY+ +I G CK+          C A     
Sbjct: 518 ISKMELASGMFNEMMDRG-----LC-PNEVTYTALISGYCKDE------KLDCAARMLER 565

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K +   P V+       +  LI GL K +    A EL + +    + P+VVTY+ +I G
Sbjct: 566 MKRSGCRPNVQT------YNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVING 619

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LCN+G +           +F ++   G  P+L+TY+ LI    + GRV     +F  +  
Sbjct: 620 LCNNGAI------PLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKK 673

Query: 388 SCFTPDAVTFTSLIKI 403
               PD VT+  +I++
Sbjct: 674 QGLIPDEVTYVKMIEV 689



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 163/380 (42%), Gaps = 58/380 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL   D M + R  +  + ++  L   L K     TV+  + ++   GL P+   YN +
Sbjct: 176 QALNYLD-MFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSV 234

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  CK G V     ++ ++ +S   PD  T+TS+I   C    +  A  +F ++   GC
Sbjct: 235 INALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGC 294

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-------------------- 231
           E +  TY+TLINGLC +G    AL+   EM   +G    V                    
Sbjct: 295 EPNAATYSTLINGLCNSGRVNEALDFISEMTR-HGVLPTVHTFTAPIVALCDMGRIEDAW 353

Query: 232 ----------CEPDAITYSTII------------------DGLCKEAGSANFLGFSCMAS 263
                     C+P+  TY+++I                  DG+     + N L    M +
Sbjct: 354 KIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMEN 413

Query: 264 FSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
               + +  +  + +  CL    ++  LI G C I   + A  +  ++ +    P +VTY
Sbjct: 414 MEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTY 473

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           NI+I+G C+ G  D          + + + + G  PD ++Y  LI+ FCKI ++     +
Sbjct: 474 NIIIKGYCDSGDTD------VAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGM 527

Query: 382 FGRILPSCFTPDAVTFTSLI 401
           F  ++     P+ VT+T+LI
Sbjct: 528 FNEMMDRGLCPNEVTYTALI 547



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 135/300 (45%), Gaps = 32/300 (10%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
            + LF R++  G+ P+  TYN L+N   +   +    +V   + +    P+  ++  LI+
Sbjct: 384 AIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIR 443

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGE 227
             C      +A ++ T +        + TYN +I G C +G T VA+ + E M ANG   
Sbjct: 444 GYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANG--- 500

Query: 228 FGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN-- 285
               C+PD  +Y+ +I G CK                S +   +  F  +  + LC N  
Sbjct: 501 ----CQPDEWSYTELISGFCK---------------ISKMELASGMFNEMMDRGLCPNEV 541

Query: 286 -FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  LI G CK  KL  A  + + + R+G  PNV TYN+LI GL         +    V 
Sbjct: 542 TYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM 601

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           L  K      + PD+ TY+ +IN  C  G +     +F +++     P+  T++SLI+ L
Sbjct: 602 LEEK------ISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQAL 655



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 128/297 (43%), Gaps = 49/297 (16%)

Query: 106 YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           Y T+L    +LN+T    DRY                       +ILR    P+ + + S
Sbjct: 196 YTTLLIQLNKLNMTSTVMDRYH----------------------QILREGLQPNLLIYNS 233

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
           +I  LC +  + +A ++  K+   G + D FTY ++I G CR      A  +F  M    
Sbjct: 234 VINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRM---- 289

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN 285
            E G  CEP+A TYST+I+GLC        L F        +++M  +  L  V      
Sbjct: 290 DEEG--CEPNAATYSTLINGLCNSGRVNEALDF--------ISEMTRHGVLPTVH----T 335

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F   I  LC + +++ A ++F  + + G  PNV TY  LI G          +       
Sbjct: 336 FTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG---------QRVSRMAIG 386

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           LF R++  G+ P+  TYN L+N   +   + S  ++F  +      P+  ++  LI+
Sbjct: 387 LFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIR 443



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 133/332 (40%), Gaps = 30/332 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V ++N+L   L K  ++     L K +    + PD  TY+ +IN  C  G +     
Sbjct: 572 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALE 631

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++++    P+  T++SLI+ L  E R+ EA  +F++L+  G   D  TY  +I    
Sbjct: 632 MFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCV 691

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            +G    A +   EM N        C+P   TY  +I GL  E      +     AS S 
Sbjct: 692 MSGKVDRAFDFLGEMINAG------CQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTST 745

Query: 267 LNKMAFYFPLVRVQCLCLNFL----------CLIDGLCKISKLKIARELFQSLPRAGLMP 316
            +       ++ V    L  L           L+  L +  +   A  L++S+      P
Sbjct: 746 FDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCP 805

Query: 317 NVVTYN----ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           N  TY      L+R L  D  MD          +FK ++       L  Y  LI   C++
Sbjct: 806 NQDTYKHFLISLLRALKVDLAMD----------VFKHMSDQRCELHLTGYKELICTLCQL 855

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            R      +F ++L      D + +T LI  L
Sbjct: 856 HRRKEARFVFEKMLSRALNADEIVWTILINGL 887



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 106/251 (42%), Gaps = 30/251 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   S+  L     K    +    +F  +   GL P+  TY  LI+ +CK  ++     
Sbjct: 502 QPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAAR 561

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L R+ RS   P+  T+  LI  L  ++    A  L   +       DV TY+T+INGLC
Sbjct: 562 MLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLC 621

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G   +AL +F +M          C P+  TYS++I  L +E              FS 
Sbjct: 622 NNGAIPLALEMFNKMVKHG------CLPNLHTYSSLIQALGQEGRVE-----EAEEMFSE 670

Query: 267 LNKMAF------YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           L K         Y  ++ V        C++ G     K+  A +    +  AG  P + T
Sbjct: 671 LKKQGLIPDEVTYVKMIEV--------CVMSG-----KVDRAFDFLGEMINAGCQPTLQT 717

Query: 321 YNILIRGLCND 331
           Y++LI+GL N+
Sbjct: 718 YDVLIKGLQNE 728



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 108/257 (42%), Gaps = 26/257 (10%)

Query: 147 VLGRILRSCFTPDAV--TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           V  R+L S   P AV      +IK    ++ + +A          G ++ +FTY TL+  
Sbjct: 143 VAMRLLESRDRPAAVGRARIHMIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQ 202

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           L +   T   ++ + ++           +P+ + Y+++I+ LCK+    +          
Sbjct: 203 LNKLNMTSTVMDRYHQILREG------LQPNLLIYNSVINALCKDGNVRDAESIINKVFK 256

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           S +    F             +  +I G C+   L  A E+F  +   G  PN  TY+ L
Sbjct: 257 SGMKPDTF------------TYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTL 304

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I GLCN G+++E   +         +   G+ P ++T+   I   C +GR+   + IF  
Sbjct: 305 INGLCNSGRVNEALDF------ISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFID 358

Query: 385 ILPSCFTPDAVTFTSLI 401
           +      P+  T+TSLI
Sbjct: 359 MKKKGCKPNVYTYTSLI 375



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 8/137 (5%)

Query: 270 MAFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           M  Y  ++R  +Q   L +  +I+ LCK   ++ A  +   + ++G+ P+  TY  +I G
Sbjct: 213 MDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILG 272

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C +  +D      + F +F R++  G  P+  TY+ LIN  C  GRV+        +  
Sbjct: 273 YCRNRDLD------SAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTR 326

Query: 388 SCFTPDAVTFTSLIKIL 404
               P   TFT+ I  L
Sbjct: 327 HGVLPTVHTFTAPIVAL 343


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 152/328 (46%), Gaps = 28/328 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + + + +   L + + +   L LF  +  +GL PD Y Y  ++   C++        V
Sbjct: 178 PQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREV 237

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +GR+  S       T+   I+ LC   R+ EA  +   L   G   DV TY TL+ GLC+
Sbjct: 238 IGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCK 297

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
               +      EEM N   EFG V  P     S ++DGL K+            ++F  +
Sbjct: 298 ----VEEFEAGEEMMNEMIEFGFV--PSEAAVSNLVDGLRKKGNIG--------SAFDLV 343

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           NK+  +     V      +  LI+ +CK  KL  A  LF ++   GL PN VTY+ILI  
Sbjct: 344 NKVKKF----GVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDS 399

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  G++D   H+        ++   G+   +Y Y+ LI+  CK+G++ +   +F  ++ 
Sbjct: 400 FCKRGKLDVALHF------LGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIA 453

Query: 388 SCFTPDAVTFTSLI----KILEINSFFR 411
           +   P+ V +TSLI    K  E+++ FR
Sbjct: 454 NGLKPNVVIYTSLISGYCKEGELHNAFR 481



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 157/379 (41%), Gaps = 77/379 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P +  +N L   + K    D   SLF  +   GLFP+  TY+ILI+ FCK G++      
Sbjct: 353 PSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHF 412

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG++           ++SLI   C   ++  A +LF ++   G + +V  Y +LI+G C+
Sbjct: 413 LGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCK 472

Query: 208 TGHTIVALNLFEE-------------------------MANGNGEFGVVCE----PDAIT 238
            G    A  L+ E                         MA  N  FG + E    P+ +T
Sbjct: 473 EGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVT 532

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+ +I+G CKE  +        + +F  L++M     +         +  LI GLC   +
Sbjct: 533 YNVLIEGHCKEGNT--------VRAFELLDEMVEKGLVPDT----YTYRPLISGLCSTGR 580

Query: 299 LKIARELFQSLPR--------AGLMPNVVTYNILIRGLCNDGQMDETK------------ 338
           +  ARE    L           G +PNVVTY  LI GLC  G MD+ +            
Sbjct: 581 VSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSL 640

Query: 339 -HYETVFLLFKRLNS---------------TGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            +  T       L S                G   +  TYNILI  FCK+GR+     + 
Sbjct: 641 PNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVL 700

Query: 383 GRILPSCFTPDAVTFTSLI 401
             ++ S  +PD ++++++I
Sbjct: 701 VNMIDSGISPDCISYSTII 719



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 145/330 (43%), Gaps = 39/330 (11%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           PS   V++   L   L K  +  +   L  ++   G+ P  + YN LIN  CK G++   
Sbjct: 318 PSEAAVSN---LVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEA 374

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             +   +      P+ VT++ LI   C   ++  A     K+   G +  V+ Y++LI+G
Sbjct: 375 ESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISG 434

Query: 205 LCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
            C+ G    A +LF+EM ANG        +P+ + Y+++I G CKE    N        +
Sbjct: 435 HCKLGKLRAAKSLFDEMIANG-------LKPNVVIYTSLISGYCKEGELHNAFRLYHEMT 487

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              ++   +             F  LI GLC  +++  A +LF  +    ++PN VTYN+
Sbjct: 488 GKGISPNTY------------TFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI G C +G           F L   +   GL PD YTY  LI+  C  GRVS       
Sbjct: 536 LIEGHCKEGNTVRA------FELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMN 589

Query: 384 RI---------LPSCFTPDAVTFTSLIKIL 404
            +         +  C  P+ VT+T+LI  L
Sbjct: 590 DLQGEQQKLNEIEGCL-PNVVTYTALINGL 618



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 151/365 (41%), Gaps = 60/365 (16%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +FD +++    RP V  +  +   L + K +     +  R+  +G      TYN+ I
Sbjct: 199 ALHLFDEIVS-SGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFI 257

Query: 133 NCFCKMGRVSH-----------------------------------GFVVLGRILRSCFT 157
              CK  RV                                     G  ++  ++   F 
Sbjct: 258 RGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFV 317

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P     ++L+  L  +  I  A  L  K++ FG    +F YN LIN +C+ G    A +L
Sbjct: 318 PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESL 377

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
           F  M +  G F     P+ +TYS +ID  CK       L F  +   + +   A  +P  
Sbjct: 378 FNNMGH-KGLF-----PNDVTYSILIDSFCKRGKLDVALHF--LGKMTEVGIKATVYP-- 427

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                   +  LI G CK+ KL+ A+ LF  +   GL PNVV Y  LI G C +G++   
Sbjct: 428 --------YSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGEL--- 476

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                 F L+  +   G+ P+ YT+  LI+  C   R++    +FG ++     P+ VT+
Sbjct: 477 ---HNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTY 533

Query: 398 TSLIK 402
             LI+
Sbjct: 534 NVLIE 538



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 145/333 (43%), Gaps = 26/333 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  +FD M+     +P V  +  L     K         L+  +   G+ P+ YT+  LI
Sbjct: 444 AKSLFDEMI-ANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALI 502

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  C   R++    + G ++     P+ VT+  LI+  C E   + A  L  ++   G  
Sbjct: 503 SGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLV 562

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV--CEPDAITYSTIIDGLCKEA 250
            D +TY  LI+GLC TG    A     ++     +   +  C P+ +TY+ +I+GLCK  
Sbjct: 563 PDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIG 622

Query: 251 --GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
               A  L    +AS S  N+                + C +D L     ++ A +L   
Sbjct: 623 LMDKAELLCREMLASNSLPNQNT--------------YACFLDYLTSEGNIEKAIQLHDV 668

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   G + N VTYNILIRG C  G++ E        +L   ++S G+ PD  +Y+ +I  
Sbjct: 669 LLE-GFLANTVTYNILIRGFCKLGRIQEAAE-----VLVNMIDS-GISPDCISYSTIIYE 721

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +C+ G +     ++  +L     PD V +  LI
Sbjct: 722 YCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLI 754



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 134/333 (40%), Gaps = 42/333 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +F  L   L           LF  +    + P+  TYN+LI   CK G     F +
Sbjct: 493 PNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFEL 552

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR--------VFGCELDVFTYN 199
           L  ++     PD  T+  LI  LC+  R+ EA      L+        + GC  +V TY 
Sbjct: 553 LDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYT 612

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LINGLC+ G    A  L  EM   N        P+  TY+  +D L  E      +   
Sbjct: 613 ALINGLCKIGLMDKAELLCREMLASNSL------PNQNTYACFLDYLTSEGNIEKAIQLH 666

Query: 260 CMASFSALNKMAFYFPLVRVQCL----------------------CLNFLCLIDGLCKIS 297
            +     L     Y  L+R  C                       C+++  +I   C+  
Sbjct: 667 DVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRG 726

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
            LK A +L++S+   G+ P+ V YN LI G C  G++  TK +E    + +R    G+ P
Sbjct: 727 DLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGEL--TKAFELRDDMMRR----GVKP 780

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
           +  TYN LI+  C +  VSS    F   L  CF
Sbjct: 781 NRATYNSLIHGTCLMSSVSSTADYFSCKLNWCF 813



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 129/319 (40%), Gaps = 39/319 (12%)

Query: 106 YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           +++ L  +++ N    F     +++LI  + +  R   G VV+  ++     P   T + 
Sbjct: 130 FESFLDSYRKCN----FSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSG 185

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
           ++  L    +   A  LF ++   G   DV+ Y  ++  LC     I A  +   M +  
Sbjct: 186 VLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSG 245

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN-KMAFYFPLVRVQCLCL 284
                 C+    TY+  I GLCK       +    + S+  L   +  Y  LV   C   
Sbjct: 246 ------CDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVE 299

Query: 285 NFLC----------------------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
            F                        L+DGL K   +  A +L   + + G+ P++  YN
Sbjct: 300 EFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYN 359

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            LI  +C DG++DE +       LF  +   GLFP+  TY+ILI+ FCK G++       
Sbjct: 360 ALINSMCKDGKLDEAES------LFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFL 413

Query: 383 GRILPSCFTPDAVTFTSLI 401
           G++           ++SLI
Sbjct: 414 GKMTEVGIKATVYPYSSLI 432


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 143/310 (46%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 142 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAML 201

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 202 ASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVD 261

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A+ +++ M + +        PD ITY+T+I GLCK+             S   L    F
Sbjct: 262 FAMEIYKRMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 315

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 316 ------------TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEG 363

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +  +   
Sbjct: 364 RSVDAEK-------MLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHA 416

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 417 PSVVTYNVLM 426



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 134/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +  H D    L   +  +G+ PD YTY++LI
Sbjct: 158 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLI 216

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 217 NGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLL 276

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD  TY+T+IDG CKE   
Sbjct: 277 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG------LKPDKFTYTTLIDGCCKEG-- 328

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 329 ------DLDTAFEHRKRMI----QENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSV 378

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 379 GLKPDTGTYTMIINEFCKKGDVWKGSK------LLKEMQRNGHAPSVVTYNVLMN 427



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 55/124 (44%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++M+  +P   ++  L     K    DT     KR+    +  D   Y  LI+  C+ GR
Sbjct: 305 MSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGR 364

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +L  +L     PD  T+T +I + C +  + + + L  +++  G    V TYN 
Sbjct: 365 SVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNV 424

Query: 201 LING 204
           L+NG
Sbjct: 425 LMNG 428



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 29/142 (20%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK---------- 338
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +          
Sbjct: 110 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 169

Query: 339 -------------------HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                              H +  F L   + ++G+ PD+YTY++LIN  CK  ++    
Sbjct: 170 LRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDAN 229

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  +L     P+ VTFT+LI
Sbjct: 230 ELFDEMLVKGLIPNGVTFTTLI 251


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 149/338 (44%), Gaps = 35/338 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+NIL   L      +  L     +   G+ PD  TYNIL N F  +G +S  + V
Sbjct: 303 PDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKV 362

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + R+L +   PD VT+T LI   C    I E+  L  K+   G +L + TY  L++ LC+
Sbjct: 363 VQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCK 422

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL----------- 256
           +G    A+ L  EM        +  +PD +TYS +I GLCK       +           
Sbjct: 423 SGRIDEAVILLHEMEV------IGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRI 476

Query: 257 ---GFSCMASFS------ALNKMAFYFPLVRVQCLCLNFL---CLIDGLCKISKLKIARE 304
               F C A  S      A+++   YF  V    +    +    +IDG  K+  +  A  
Sbjct: 477 YPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVR 536

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
            ++ +   G+ P +VT+N LI G C  G++ E         L   +   GL P   TY  
Sbjct: 537 SYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEA------VKLLDTIKVHGLVPTSVTYTT 590

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           L+N +C+ G + S F +   +      P  +T+T ++K
Sbjct: 591 LMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVK 628



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 152/332 (45%), Gaps = 37/332 (11%)

Query: 71  NEALCVFDYM--LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           ++AL V   M  LN++ S   + ++N L   L   +H D +  ++  +  +G+  + YT 
Sbjct: 185 HDALFVLAKMKVLNLQVS---IATYNSL---LYNLRHTDIMWDVYNEIKASGVPQNEYTN 238

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
            ILI+  C+  R+      L       F P  V+F +L+   C    +  A + F  +  
Sbjct: 239 PILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIK 298

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           +G   DV++YN L++GLC  G    AL    +M N     GV  EPD +TY+ + +    
Sbjct: 299 YGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMEN----HGV--EPDIVTYNILAN---- 348

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                   GF  +   S   K+     L  +    + +  LI G C++  ++ + +L + 
Sbjct: 349 --------GFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEK 400

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   GL  ++VTY +L+  LC  G++DE        +L   +   GL PDL TY++LI+ 
Sbjct: 401 MLSQGLKLSIVTYTVLLSSLCKSGRIDEA------VILLHEMEVIGLKPDLLTYSVLIHG 454

Query: 369 FCKIGRVSSGFVIF-----GRILPSCFTPDAV 395
            CK G V     ++      RI P+ F   A+
Sbjct: 455 LCKRGAVEEAIELYEEMCSKRIYPNSFVCSAI 486



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 143/348 (41%), Gaps = 59/348 (16%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF---- 145
           + ++ +L   L K+   D  + L   + + GL PD  TY++LI+  CK G V        
Sbjct: 410 IVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYE 469

Query: 146 ----------------VVLGRILRSCFTPDAVTFTSLIKDLCAESRIM------------ 177
                           ++ G   +   +   + F S+ K   AE  I+            
Sbjct: 470 EMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLG 529

Query: 178 ---EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234
              EA   + ++   G    + T+N+LI G C+ G    A+ L + +       G+V  P
Sbjct: 530 NIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIK----VHGLV--P 583

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
            ++TY+T+++G C+E    +         F  L++M        ++   + +  ++ GLC
Sbjct: 584 TSVTYTTLMNGYCEEGDMHSM--------FDMLHEM----EAKAIKPTQITYTVVVKGLC 631

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K  +L  + +L + +   GL P+ +TYN +I+  C    +      +  F L  ++    
Sbjct: 632 KEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDL------QKAFQLHNQMLQHS 685

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           L P   TYN+LIN  C  G +     +   +         V +T++IK
Sbjct: 686 LQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIK 733



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 133/319 (41%), Gaps = 29/319 (9%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +NI+    AK  +    +  +K++   G+ P   T+N LI  FCK G+++    +L  I 
Sbjct: 518 YNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIK 577

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                P +VT+T+L+   C E  +     +  ++     +    TY  ++ GLC+ G   
Sbjct: 578 VHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLH 637

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            ++ L + M    G F     PD ITY+T+I   CK              +F   N+M  
Sbjct: 638 ESVQLLKYMY-ARGLF-----PDQITYNTVIQSFCK--------AHDLQKAFQLHNQMLQ 683

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
           +     +Q   + +  LI+GLC    LK A  L  +L    +    V Y  +I+  C  G
Sbjct: 684 H----SLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKG 739

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
            +      +   + F ++   G    +  Y+ +IN  CK   ++     F  +L     P
Sbjct: 740 DV------QNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPP 793

Query: 393 DAVTFTSLIKILEINSFFR 411
           D       I ++ +N+F R
Sbjct: 794 D-----QDICLVMLNAFHR 807



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 123/305 (40%), Gaps = 24/305 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +FN L     K       + L   + + GL P   TY  L+N +C+ G +   F +
Sbjct: 548 PTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDM 607

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P  +T+T ++K LC E R+ E+  L   +   G   D  TYNT+I   C+
Sbjct: 608 LHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCK 667

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A  L  +M   +       +P  +TY+ +I+GLC               +    
Sbjct: 668 AHDLQKAFQLHNQMLQHS------LQPSPVTYNVLINGLC------------VYGNLKDA 709

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +++        ++   + +  +I   C    ++ A   F  +   G   ++  Y+ +I  
Sbjct: 710 DRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINR 769

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC    + + K +      F  + + G+ PD     +++N F + G  +S F IF  ++ 
Sbjct: 770 LCKRNLITDAKFF------FCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIK 823

Query: 388 SCFTP 392
               P
Sbjct: 824 CGLLP 828



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 119/270 (44%), Gaps = 61/270 (22%)

Query: 171 CAESR---IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNG 226
           CA SR   + +A  +  K++V   ++ + TYN+L+  L    HT +  +++ E+ A+G  
Sbjct: 176 CAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNL---RHTDIMWDVYNEIKASG-- 230

Query: 227 EFGVVCEPDAITYSTIIDGLCKEA---GSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
                   +  T   +IDGLC+++    +  FL  +    F          P V      
Sbjct: 231 -----VPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFG---------PSV------ 270

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET- 342
           ++F  L+ G CK+  + +A+  F  + + GL+P+V +YNIL+ GLC  G M+E   +   
Sbjct: 271 VSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTND 330

Query: 343 ----------------------------VFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
                                        + + +R+   GL PDL TY ILI   C++G 
Sbjct: 331 MENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGN 390

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +   F +  ++L        VT+T L+  L
Sbjct: 391 IEESFKLKEKMLSQGLKLSIVTYTVLLSSL 420



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 83/202 (41%), Gaps = 16/202 (7%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT 119
           EGD+ S+        FD +  M     +P   ++ ++   L K       + L K +   
Sbjct: 598 EGDMHSM--------FDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYAR 649

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           GLFPD+ TYN +I  FCK   +   F +  ++L+    P  VT+  LI  LC    + +A
Sbjct: 650 GLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDA 709

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L   L+     L    Y T+I   C  G    AL  F +M     E  +        Y
Sbjct: 710 DRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIR------DY 763

Query: 240 STIIDGLCKEAGSANFLGFSCM 261
           S +I+ LCK     +   F CM
Sbjct: 764 SAVINRLCKRNLITDAKFFFCM 785


>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
 gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
          Length = 866

 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 142/365 (38%), Gaps = 70/365 (19%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V S+N     L +         L + +   G+ P+ YTYNI+++  CK G+      V  
Sbjct: 316 VESYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVEN 375

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            I     +PD VT+TSL+   C++  I  A  +  ++   GC  + FTYN L+  L R G
Sbjct: 376 FIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAG 435

Query: 210 HTIVALNLFEEM------------------------------------ANGNGEFGVV-- 231
            T  A  L E M                                      G+G  G +  
Sbjct: 436 RTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGN 495

Query: 232 --------------CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
                         C PD ITYS +I  LCKE              F    K      + 
Sbjct: 496 SFLSVVSDSSISQRCLPDQITYSILISALCKEG------------RFDEAKKKLLEMIVK 543

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            +    + +   I G CK  K  +A ++ + + + G  P+  TYN+LIRG       +E 
Sbjct: 544 DISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGF------EEK 597

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
              E +  L   +   G+ P++ TYN LI  FC+ G V+    +   +L +   P+  +F
Sbjct: 598 HKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQNELVPNITSF 657

Query: 398 TSLIK 402
             LIK
Sbjct: 658 DLLIK 662



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 160/360 (44%), Gaps = 48/360 (13%)

Query: 73  ALCVFDYMLNMRPSRPPVTS-FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           A+  F  +  +  + PP T  +N L     +    D V +L+K L L+G  PD +T N+L
Sbjct: 92  AIPAFRSLRALTSAPPPTTPVYNRLILAALRESRLDLVEALYKDLLLSGAQPDVFTRNLL 151

Query: 132 INCFCKMGRV---------------------SHGFVVLGRILRSCFTPDA------VTFT 164
           +   C  GR+                     + G+   GR + +    D       V   
Sbjct: 152 LQALCDAGRMELAQRVFDAMPARNEFSFGILARGYCRAGRSIDALKVLDGMPSMNLVVCN 211

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           +++   C E  + EA  L  ++RV G   +V T+N  I+ LC+ G  + A  +F++M   
Sbjct: 212 TVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQE- 270

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL 284
           + + G+   PD +T+  ++ G C         GF   A    ++ M     L RV+    
Sbjct: 271 DWQHGLP-RPDQVTFDVMLSGFCDA-------GFVDEARV-LVDIMRCGGFLRRVE---- 317

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
           ++   + GL +  ++  A+EL + +   G+ PN  TYNI++ GLC +G+  + +  E   
Sbjct: 318 SYNRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVENF- 376

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                + S  + PD+ TY  L++ +C  G +++   I   +      P++ T+  L++ L
Sbjct: 377 -----IRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSL 431



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 134/342 (39%), Gaps = 47/342 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP   +F+++          D    L   +   G      +YN  ++   + GRV     
Sbjct: 278 RPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQE 337

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +      P++ T+  ++  LC E +  +A  +   +R      DV TY +L++  C
Sbjct: 338 LLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYC 397

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G+   A  + +EMA         C P++ TY+ ++  L +   +              
Sbjct: 398 SKGNIAAANRILDEMAQKG------CAPNSFTYNVLLQSLWRAGRTTEAERL-----LER 446

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL------------ 314
           +N+  +                +IDGLC+ S+L +A ++   +   G             
Sbjct: 447 MNEKGYSLDTAGCN-------IIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLS 499

Query: 315 -----------MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
                      +P+ +TY+ILI  LC +G+ DE K  + + ++ K ++     PD   Y+
Sbjct: 500 VVSDSSISQRCLPDQITYSILISALCKEGRFDEAKK-KLLEMIVKDIS-----PDSVIYD 553

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
             I+ +CK G+ S    +   +      P   T+  LI+  E
Sbjct: 554 TFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFE 595



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 151/374 (40%), Gaps = 78/374 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI-LINC--FCKMGRVSHG 144
           PP  S + L   +A+    D +L L  R  L+  FPD   + + L++C     +      
Sbjct: 38  PPPRSTSFLARLVAEHPAADALLPLLHRHILS--FPDPSPHLLALLSCSDVLPLRLAIPA 95

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           F  L R L S   P    +  LI     ESR+    AL+  L + G + DVFT N L+  
Sbjct: 96  FRSL-RALTSAPPPTTPVYNRLILAALRESRLDLVEALYKDLLLSGAQPDVFTRNLLLQA 154

Query: 205 LCRTGHTIVALNLFEEMANGNG-EFGVVCEP--------DAITY------------STII 243
           LC  G   +A  +F+ M   N   FG++           DA+              +T++
Sbjct: 155 LCDAGRMELAQRVFDAMPARNEFSFGILARGYCRAGRSIDALKVLDGMPSMNLVVCNTVV 214

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLK 300
            G CKE                 + +       +RVQ L  N   F   I  LCK  ++ 
Sbjct: 215 AGFCKEG---------------LVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVL 259

Query: 301 IARELFQSLP---RAGL-MPNVVTYNILIRGLCNDGQMDETKHYETV-----FL------ 345
            A  +FQ +    + GL  P+ VT+++++ G C+ G +DE +    +     FL      
Sbjct: 260 DAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESY 319

Query: 346 ------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
                             L + +   G+ P+ YTYNI+++  CK G+      +   I  
Sbjct: 320 NRWLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVENFIRS 379

Query: 388 SCFTPDAVTFTSLI 401
              +PD VT+TSL+
Sbjct: 380 GVMSPDVVTYTSLL 393



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 6/161 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++IL   L K   +D        + +  + PD   Y+  I+ +CK G+ S    V
Sbjct: 512 PDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKV 571

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  + +    P   T+  LI+    + +  E   L ++++  G   +V TYN+LI   C+
Sbjct: 572 LRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQ 631

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G    A+ L +EM            P+  ++  +I   CK
Sbjct: 632 QGMVNKAMPLLDEMLQNE------LVPNITSFDLLIKAYCK 666



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N+L     +    + ++ L   +   G+ P+  TYN LI  FC+ G V+    +
Sbjct: 582 PSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAMPL 641

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF-TKLRVFGCELDVFTYNTLINGLC 206
           L  +L++   P+  +F  LIK  C  +    A  +F   LR   C      Y  +   L 
Sbjct: 642 LDEMLQNELVPNITSFDLLIKAYCKITDFPSAQMVFDAALRT--CGQKEVLYCLMCTELT 699

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
             G  I A N+  EMA       +     +  Y  II GLC+
Sbjct: 700 TYGKWIEAKNIL-EMA-----LEMRVSIQSFPYKQIISGLCE 735


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 37/339 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V + N++   + K K  + V SLF+ ++  G+ P+  T+NILIN  C  G +     
Sbjct: 195 KPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGN 254

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L ++  + F P  VT+ +L+   C + R   A  L   +   G E DV TYN  I+ LC
Sbjct: 255 LLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLC 314

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASF 264
               +  A  L ++M         +  P+ +TY+T+I+G  KE   G A  + F+ M+ F
Sbjct: 315 TNHRSAKAYLLLKKMRK------EMISPNEVTYNTLINGFVKEGKIGVAAQV-FNEMSKF 367

Query: 265 SALNKMAFYFPLVRVQC-------------------LCLN---FLCLIDGLCKISKLKIA 302
                   Y  L+   C                   L LN   +  L++GLCK  K ++A
Sbjct: 368 DLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELA 427

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
           + L + +    ++   + Y +LI GLC +G +DE         L   +   G+ PD+ TY
Sbjct: 428 KRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQ------LVGNMYKDGVNPDVITY 481

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + LIN FC++G + S   I  R+  S    + + +++LI
Sbjct: 482 SSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLI 520



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 141/331 (42%), Gaps = 27/331 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL + D+M      R    ++  L   L K + ++    L +R+ +  +      Y +L
Sbjct: 391 EALRLLDHM-EAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVL 449

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK G +     ++G + +    PD +T++SLI   C    I  A  +  ++   G 
Sbjct: 450 IDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGL 509

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            L+   Y+TLI   C+ G+   A+ ++  M  NG+G        D  T + ++  LC++ 
Sbjct: 510 VLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHG-------ADHFTCNVLVSSLCRDG 562

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                  F C  S   L   +            + + C+I+G   I     A   F  + 
Sbjct: 563 KLGEAEKFLCHMSRIGLVPNS------------ITYDCIINGYGSIGDPLNAFSFFDDMI 610

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           + G  P+  TY  L++GLC  G + E K +        RL+      D   YN L+   C
Sbjct: 611 KCGQHPSFFTYGSLLKGLCKGGNLVEAKKF------LNRLHYIPGAVDSVMYNTLLAETC 664

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G +     +F +++ +   PD+ T++SL+
Sbjct: 665 KSGNLHEAVALFDKMVQNNVLPDSYTYSSLL 695



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 147/355 (41%), Gaps = 53/355 (14%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++ +L   L K    D  + L   +   G+ PD  TY+ LIN FC++G +     ++ R+
Sbjct: 445 AYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRM 504

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            RS    + + +++LI + C    + EA  ++  +   G   D FT N L++ LCR G  
Sbjct: 505 YRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKL 564

Query: 212 IVALNLFEEMA---------------NGNGEFG------------VVC--EPDAITYSTI 242
             A      M+               NG G  G            + C   P   TY ++
Sbjct: 565 GEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSL 624

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           + GLCK        G + + +   LN++  Y P   V  +  N   L+   CK   L  A
Sbjct: 625 LKGLCK--------GGNLVEAKKFLNRL-HYIPGA-VDSVMYN--TLLAETCKSGNLHEA 672

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
             LF  + +  ++P+  TY+ L+ GLC  G     K    V L    +    LFP+   Y
Sbjct: 673 VALFDKMVQNNVLPDSYTYSSLLTGLCRKG-----KAVTAVCLFGTAMGRGTLFPNHVMY 727

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFF 410
             L++   K G   + F  F  ++     PD V F ++I       ++++ N FF
Sbjct: 728 TCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFF 782



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 145/360 (40%), Gaps = 34/360 (9%)

Query: 57  CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
           C  +G G I    P  A   FD M+      P   ++  L   L K  +         RL
Sbjct: 588 CIINGYGSIGD--PLNAFSFFDDMIKC-GQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRL 644

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
           +      D   YN L+   CK G +     +  +++++   PD+ T++SL+  LC + + 
Sbjct: 645 HYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKA 704

Query: 177 MEAAALFTKLRVFGCEL-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
           + A  LF      G    +   Y  L++GL + GH   A   FEEM          C PD
Sbjct: 705 VTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKG-----TC-PD 758

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDG 292
            + ++ IID  C   G               + K   +F  +R   +C N   +  L+ G
Sbjct: 759 TVAFNAIIDS-CSRRGQ--------------MMKANDFFSTMRWWGVCPNLATYNILLHG 803

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
             K   L     L+ ++ R G+ P+ +T++ LI GL   G  D          L  ++  
Sbjct: 804 FSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPD------LGVKLLGKMIM 857

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            G   D +T+NILIN + + G++   F +   +      PD  T+  +   L   S FR+
Sbjct: 858 EGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRE 917



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 145/372 (38%), Gaps = 78/372 (20%)

Query: 100 LAKTKHYDTVLSLFKRL--------NLTGLFPDRY--------TYNILINCFCKMGRVSH 143
           L K + YD+  S+ + L        ++ G   D Y         +++LI  + K G + +
Sbjct: 122 LVKARMYDSAKSILRHLCQMGIGSKSIFGALMDTYPLCNSIPSVFDLLIRVYLKEGMIDY 181

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
                  +    F P   T   ++  +  + R     +LF ++   G   +V T+N LIN
Sbjct: 182 AVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILIN 241

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN--------- 254
           GLC  G+   A NL ++M     E G V  P  +TY+T+++  CK+              
Sbjct: 242 GLCVEGNLKKAGNLLKQME----ENGFV--PTIVTYNTLLNWYCKKGRYKAAIELIDYMI 295

Query: 255 -------------FLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISK 298
                        F+   C    SA  K       +R + +  N   +  LI+G  K  K
Sbjct: 296 CKGIEADVCTYNVFIDNLCTNHRSA--KAYLLLKKMRKEMISPNEVTYNTLINGFVKEGK 353

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET--------------------- 337
           + +A ++F  + +  L PN VTYN LI G C+ G  +E                      
Sbjct: 354 IGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGT 413

Query: 338 ------KH--YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                 KH  +E    L +R+    +      Y +LI+  CK G +     + G +    
Sbjct: 414 LLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDG 473

Query: 390 FTPDAVTFTSLI 401
             PD +T++SLI
Sbjct: 474 VNPDVITYSSLI 485



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 148/360 (41%), Gaps = 32/360 (8%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D       L E CKS   G++     +EA+ +FD M+         T  ++L G   K K
Sbjct: 652 DSVMYNTLLAETCKS---GNL-----HEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGK 703

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
               V      +    LFP+   Y  L++   K G     F     +++    PD V F 
Sbjct: 704 AVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFN 763

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           ++I       ++M+A   F+ +R +G   ++ TYN L++G  +    +  L+L+  M   
Sbjct: 764 AIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMR- 822

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL 284
            G F     PD +T+ ++I GL K +G  + LG   +        +A  F          
Sbjct: 823 EGIF-----PDKLTFHSLILGLSK-SGIPD-LGVKLLGKMIMEGTLADQF---------- 865

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            F  LI+   +  K++ A +L   +   G+ P+  TYN +  GL       E+    TV 
Sbjct: 866 TFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRES----TVV 921

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           L    +   G+ P    Y  LIN  C++G +   F +   +    F    V  +++++ L
Sbjct: 922 L--HEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGL 979



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 131/315 (41%), Gaps = 26/315 (8%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P + ++NIL    +K +     LSL+  +   G+FPD+ T++ LI    K G    G  +
Sbjct: 792  PNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKL 851

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            LG+++      D  TF  LI       ++ +A  L   +   G   D  TYN + NGL +
Sbjct: 852  LGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNK 911

Query: 208  TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                  +  +  EM     E GV+  P    Y T+I+G+C+              +F   
Sbjct: 912  KSAFRESTVVLHEML----ENGVI--PKHAQYITLINGMCRVG--------DIQGAFKLK 957

Query: 268  NKM-AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            ++M A  F    V         ++ GL    K + A  +   + R  L+P + T+  L+ 
Sbjct: 958  DEMEALGFGSHEVA-----ESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMH 1012

Query: 327  GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
              C D ++ E    + V  L       GL  D+  YN+LI   C  G  ++ F ++  + 
Sbjct: 1013 RFCRDAKIAEALKLKGVMEL------CGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMR 1066

Query: 387  PSCFTPDAVTFTSLI 401
                 P+  T+  L+
Sbjct: 1067 HRDLCPNITTYAVLV 1081



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 41/194 (21%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF-- 145
            P   ++N +F  L K   +     +   +   G+ P    Y  LIN  C++G +   F  
Sbjct: 897  PDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKL 956

Query: 146  ---------------------------------VVLGRILRSCFTPDAVTFTSLIKDLCA 172
                                             +VL  +LR    P   TFT+L+   C 
Sbjct: 957  KDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCR 1016

Query: 173  ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
            +++I EA  L   + + G +LDV  YN LI G+C  G +  A  L+EEM + +     +C
Sbjct: 1017 DAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRD-----LC 1071

Query: 233  EPDAITYSTIIDGL 246
             P+  TY+ ++D +
Sbjct: 1072 -PNITTYAVLVDAI 1084



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 1/119 (0%)

Query: 72   EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
            +A+ V D+ML MR   P + +F  L     +       L L   + L GL  D   YN+L
Sbjct: 987  DAMLVLDHMLRMRL-LPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVL 1045

Query: 132  INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I   C  G  +  F +   +      P+  T+  L+  + A + +++   L T L+  G
Sbjct: 1046 IMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQERG 1104


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 144/327 (44%), Gaps = 28/327 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDRYTYNILINCFCKMGRVSHGFV 146
           P V + NIL     + +  D  L LF  +     L P+  TY  +I C+CKM R+     
Sbjct: 68  PSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQ 127

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVFGCELDVFTYNTLINGL 205
           +L     SC + D +  TS+ +  C   R+ EA  L   +      + D+  +N +I+G 
Sbjct: 128 LLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGF 185

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G    A  + E + +        C P+A+TY+T+IDG CK    +  L       F 
Sbjct: 186 CKAGRVREAYEMLETLVSMG------CVPNAVTYTTLIDGFCKSGNLSEALQL-----FK 234

Query: 266 ALNKMAFYF-PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            L+    +  P V      + F  LI GLCK  +L+ A EL + +    L  +  TY  L
Sbjct: 235 VLSSRDHHAEPNV------VTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTL 288

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + GLC  G+  E      V  +F+ +   G  P + TY  L++  CK G +     +   
Sbjct: 289 MDGLCKQGRTSE------VSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRS 342

Query: 385 ILPSCFTPDAVTFTSLIKILEINSFFR 411
           ++     PD  T+T L++ L  N   R
Sbjct: 343 MVAKGIPPDVTTYTVLLEGLFENGKVR 369



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 30/286 (10%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD   +N++I+ FCK GRV   + +L  ++     P+AVT+T+LI   C    + EA  L
Sbjct: 173 PDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQL 232

Query: 183 FTKL--RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
           F  L  R    E +V T+N LI+GLC+      A  L ++M   +         D  TY+
Sbjct: 233 FKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARD------LRADTFTYT 286

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISK 298
           T++DGLCK+  ++                   +  ++R  C    + +  L+   CK   
Sbjct: 287 TLMDGLCKQGRTSEV--------------SRVFEEMLREGCNPSVVTYTTLVHAHCKAGS 332

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           L+ A+++ +S+   G+ P+V TY +L+ GL  +G++       T    F+++      P 
Sbjct: 333 LQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKV------RTATEFFEKILRERCPPC 386

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              Y+ L+   CK   V      +  +L     PD  T   L+++L
Sbjct: 387 AVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEML 432



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 137/332 (41%), Gaps = 61/332 (18%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+R+T+++LI   CK GR+        ++L     P+      L+  LC    + +A A+
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F   R   C   V T N LING C       AL LF EM      F +V  P+A TY+ I
Sbjct: 61  F---RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKN---FALV--PEATTYTAI 112

Query: 243 IDGLCK--------------EAGSANFLGFSCMA-SFSALNKMAFYFPLV-------RVQ 280
           I   CK                 S++ +  + +A  F    ++   + L+         +
Sbjct: 113 IKCYCKMDRLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAK 172

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET--- 337
              + +  +I G CK  +++ A E+ ++L   G +PN VTY  LI G C  G + E    
Sbjct: 173 PDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQL 232

Query: 338 -------KHY---------------------ETVFLLFKRLNSTGLFPDLYTYNILINCF 369
                   H+                     E  F L K++ +  L  D +TY  L++  
Sbjct: 233 FKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGL 292

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK GR S    +F  +L     P  VT+T+L+
Sbjct: 293 CKQGRTSEVSRVFEEMLREGCNPSVVTYTTLV 324



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 150/344 (43%), Gaps = 46/344 (13%)

Query: 30  PSYPTTTATLRLTVK-DR-ASLEQFLKER-CKSSGEGDITSITP--------NEALCVFD 78
           P   T TA ++   K DR     Q L+E  C SS    ITS+          +EA  +  
Sbjct: 104 PEATTYTAIIKCYCKMDRLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLL 163

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
            M+  + ++P + ++N++     K         + + L   G  P+  TY  LI+ FCK 
Sbjct: 164 DMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKS 223

Query: 139 GRVSHGFVVLGRILRS---CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           G +S    +  ++L S      P+ VTF +LI  LC   R+  A  L  +++      D 
Sbjct: 224 GNLSEALQLF-KVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADT 282

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS--- 252
           FTY TL++GLC+ G T     +FEEM          C P  +TY+T++   CK AGS   
Sbjct: 283 FTYTTLMDGLCKQGRTSEVSRVFEEMLREG------CNPSVVTYTTLVHAHCK-AGSLQD 335

Query: 253 ANFLGFSCMA--------SFSAL-----------NKMAFYFPLVRVQC--LCLNFLCLID 291
           A  +  S +A        +++ L               F+  ++R +C    + +  L+ 
Sbjct: 336 AQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVR 395

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
           G CK + +  A + +  +    L P+  T  +L+  LC  G+ D
Sbjct: 396 GCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 10/118 (8%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  LI GLCK  +L  A E +  +     +PN+   N+L+  LC  G MD+         
Sbjct: 6   FSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQA------MA 59

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS-CFTPDAVTFTSLIK 402
           +F+ +  +   P + T NILIN FC++  +     +F  +  +    P+A T+T++IK
Sbjct: 60  IFRGIQCS---PSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIK 114


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 144/327 (44%), Gaps = 28/327 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDRYTYNILINCFCKMGRVSHGFV 146
           P V + NIL     + +  D  L LF  +     L P+  TY  +I C+CKM R+     
Sbjct: 68  PSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQ 127

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVFGCELDVFTYNTLINGL 205
           +L     SC + D +  TS+ +  C   R+ EA  L   +      + D+  +N +I+G 
Sbjct: 128 LLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGF 185

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G    A  + E + +        C P+A+TY+T+IDG CK    +  L       F 
Sbjct: 186 CKAGRVREAYEMLETLVSMG------CVPNAVTYTTLIDGFCKSGNLSEALQL-----FK 234

Query: 266 ALNKMAFYF-PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            L+    +  P V      + F  LI GLCK  +L+ A EL + +    L  +  TY  L
Sbjct: 235 VLSSRDHHAEPNV------VTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTL 288

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + GLC  G+  E      V  +F+ +   G  P + TY  L++  CK G +     +   
Sbjct: 289 MDGLCKQGRTSE------VSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRS 342

Query: 385 ILPSCFTPDAVTFTSLIKILEINSFFR 411
           ++     PD  T+T L++ L  N   R
Sbjct: 343 MVAKGIPPDVTTYTVLLEGLFENGKVR 369



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 131/286 (45%), Gaps = 30/286 (10%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD   +N++I+ FCK GRV   + +L  ++     P+AVT+T+LI   C    + EA  L
Sbjct: 173 PDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQL 232

Query: 183 FTKL--RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
           F  L  R    E +V T+N LI+GLC+      A  L ++M   +         D  TY+
Sbjct: 233 FKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARD------LRADTFTYT 286

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISK 298
           T++DGLCK+  ++                   +  ++R  C    + +  L+   CK   
Sbjct: 287 TLMDGLCKQGRTSEV--------------SRVFEEMLREGCNPSVVTYTTLVHAHCKAGS 332

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           L+ A+++ +S+   G+ P+V TY +L+ GL  +G++       T    F+++      P 
Sbjct: 333 LQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKV------RTATEFFEKILRERCPPC 386

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              Y+ L+   CK   V      +  +L     PD  T   L+++L
Sbjct: 387 AVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEML 432



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 138/332 (41%), Gaps = 61/332 (18%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+R+T+++LI   CK GR+        ++L     P+      L+  LC   ++ +A A+
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F   R   C   V T N LING C       AL LF EM      F +V  P+A TY+ I
Sbjct: 61  F---RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKN---FALV--PEATTYTAI 112

Query: 243 IDGLCK--------------EAGSANFLGFSCMA-SFSALNKMAFYFPLV-------RVQ 280
           I   CK                 S++ +  + +A  F    ++   + L+         +
Sbjct: 113 IKCYCKMDRLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAK 172

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET--- 337
              + +  +I G CK  +++ A E+ ++L   G +PN VTY  LI G C  G + E    
Sbjct: 173 PDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQL 232

Query: 338 -------KHY---------------------ETVFLLFKRLNSTGLFPDLYTYNILINCF 369
                   H+                     E  F L K++ +  L  D +TY  L++  
Sbjct: 233 FKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGL 292

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK GR S    +F  +L     P  VT+T+L+
Sbjct: 293 CKQGRTSEVSRVFEEMLREGCNPSVVTYTTLV 324



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 150/344 (43%), Gaps = 46/344 (13%)

Query: 30  PSYPTTTATLRLTVK-DR-ASLEQFLKER-CKSSGEGDITSITP--------NEALCVFD 78
           P   T TA ++   K DR     Q L+E  C SS    ITS+          +EA  +  
Sbjct: 104 PEATTYTAIIKCYCKMDRLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLL 163

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
            M+  + ++P + ++N++     K         + + L   G  P+  TY  LI+ FCK 
Sbjct: 164 DMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKS 223

Query: 139 GRVSHGFVVLGRILRS---CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           G +S    +  ++L S      P+ VTF +LI  LC   R+  A  L  +++      D 
Sbjct: 224 GNLSEALQLF-KVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADT 282

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS--- 252
           FTY TL++GLC+ G T     +FEEM          C P  +TY+T++   CK AGS   
Sbjct: 283 FTYTTLMDGLCKQGRTSEVSRVFEEMLREG------CNPSVVTYTTLVHAHCK-AGSLQD 335

Query: 253 ANFLGFSCMA--------SFSAL-----------NKMAFYFPLVRVQC--LCLNFLCLID 291
           A  +  S +A        +++ L               F+  ++R +C    + +  L+ 
Sbjct: 336 AQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVR 395

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
           G CK + +  A + +  +    L P+  T  +L+  LC  G+ D
Sbjct: 396 GCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 10/118 (8%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  LI GLCK  +L  A E +  +     +PN+   N+L+  LC  G+MD+         
Sbjct: 6   FSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQA------MA 59

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS-CFTPDAVTFTSLIK 402
           +F+ +  +   P + T NILIN FC++  +     +F  +  +    P+A T+T++IK
Sbjct: 60  IFRGIQCS---PSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIK 114


>gi|302143623|emb|CBI22376.3| unnamed protein product [Vitis vinifera]
          Length = 554

 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 144/319 (45%), Gaps = 26/319 (8%)

Query: 83  MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142
           M    P + ++N+L G L K     T + L   ++L+G  PD  TYN ++ C    G   
Sbjct: 193 MSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGFD 252

Query: 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
                    LR       +T+T LI+ +C     ++A  +   + + GC  D+ TYN+L+
Sbjct: 253 QAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLV 312

Query: 203 NGLCRTG-HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           N  C+ G +   AL ++  +++G G       P+ +TY+T++  LC              
Sbjct: 313 NYTCKQGKYEDTALIIYNLLSHGMG-------PNTVTYNTLLHSLCTHG----------- 354

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
             +  ++++             + +  LI+GLCK   L  A   F  +     +P+++TY
Sbjct: 355 -YWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITY 413

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           N L+  LC +G +DE  H      L   LN T   P L TYNI+I+   K G +     +
Sbjct: 414 NTLLAALCKEGMVDEALH------LLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMEL 467

Query: 382 FGRILPSCFTPDAVTFTSL 400
           +G ++   F PD +T  +L
Sbjct: 468 YGEMIERGFAPDDITHRTL 486



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 121/277 (43%), Gaps = 26/277 (9%)

Query: 104 KHYDTV--LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           KH  TV  + + + + + G +PD  TYN L+N  CK G+     +++  +L     P+ V
Sbjct: 282 KHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTV 341

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           T+ +L+  LC      E   +   +        V TYN LINGLC+ G    A+N F++M
Sbjct: 342 TYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQM 401

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
            + N      C PD ITY+T++  LCKE      L         +LN         R   
Sbjct: 402 VSHN------CLPDIITYNTLLAALCKEGMVDEALHL-----LHSLND-------TRCSP 443

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             + +  +IDGL K   ++ A EL+  +   G  P+ +T+  L  GL    ++D     E
Sbjct: 444 GLITYNIVIDGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWGLF---RLDLV---E 497

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
              ++ K +N          +  +I+  C  G +   
Sbjct: 498 DALVILKEMNKRNQRIKNSAFRFVIHGLCAAGMIEEA 534



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 123/276 (44%), Gaps = 28/276 (10%)

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI    K+        VL  ++ S   PD +T+  L+  LC +  +  A  L  ++ + G
Sbjct: 171 LIRGLIKLESTERATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSG 230

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  D  TYNT++  +   G    A+  +++           C    ITY+ +I+ +CK  
Sbjct: 231 CPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKG------CPAYLITYTVLIELVCKHC 284

Query: 251 GSANFLGFSCMASFSALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           G+        + +   L  MA    +P +      + +  L++  CK  K +    +  +
Sbjct: 285 GT--------VQAMEVLEDMAIEGCYPDI------VTYNSLVNYTCKQGKYEDTALIIYN 330

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   G+ PN VTYN L+  LC  G  DE    + + L+   +N+T   P + TYNILIN 
Sbjct: 331 LLSHGMGPNTVTYNTLLHSLCTHGYWDEV---DEILLI---MNTTSQPPTVVTYNILING 384

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            CK G +      F +++     PD +T+ +L+  L
Sbjct: 385 LCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAAL 420



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 18/222 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   L    ++D V  +   +N T   P   TYNILIN  CK G +      
Sbjct: 338 PNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINF 397

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++     PD +T+ +L+  LC E  + EA  L   L    C   + TYN +I+GL +
Sbjct: 398 FDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAK 457

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A+ L+ EM     E G    PD IT+ T+  GL +       L    +     +
Sbjct: 458 KGCMEKAMELYGEMI----ERGFA--PDDITHRTLFWGLFRLD-----LVEDALVILKEM 506

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
           NK        R++     F  +I GLC    ++ A +L Q L
Sbjct: 507 NKRN-----QRIKNSAFRF--VIHGLCAAGMIEEANQLHQKL 541



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 29/154 (18%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET----------- 337
           L+ GLCK   LK A EL   +  +G  P+ +TYN ++R + + G  D+            
Sbjct: 206 LVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKG 265

Query: 338 ----------------KHYETV--FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                           KH  TV    + + +   G +PD+ TYN L+N  CK G+     
Sbjct: 266 CPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTA 325

Query: 380 VIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           +I   +L     P+ VT+ +L+  L  + ++ +V
Sbjct: 326 LIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEV 359



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 9/174 (5%)

Query: 61  GEGDITSITPNEALCVFDY---------MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
           G   +T  T   +LC   Y         ++N     P V ++NIL   L K    D  ++
Sbjct: 337 GPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAIN 396

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
            F ++      PD  TYN L+   CK G V     +L  +  +  +P  +T+  +I  L 
Sbjct: 397 FFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLA 456

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
            +  + +A  L+ ++   G   D  T+ TL  GL R      AL + +EM   N
Sbjct: 457 KKGCMEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRN 510



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           ++  LC   KL  A  L   + R   +P   +   LIRGL    +++ T   E    + K
Sbjct: 136 ILQNLCSKGKLVNASRLIDVMARRNQIPYFPSCINLIRGLI---KLEST---ERATRVLK 189

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            +  +G  PD+ TYN+L+   CK G + +   +   +  S   PDA+T+ ++++ +  + 
Sbjct: 190 IMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHG 249

Query: 409 FFRQV 413
            F Q 
Sbjct: 250 GFDQA 254


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 168/370 (45%), Gaps = 44/370 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL +F   +  R   P   ++ IL    +     D  + L + +  +G   +   +  
Sbjct: 39  QEALALFRNAM-ARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTT 97

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+   C  GRV         + + C  PD +T+T+L+  LC   +  EA  +  ++   G
Sbjct: 98  LMKGLCDAGRVVEALEHFRAMAKDC-APDVMTYTALVHALCKAGKFDEAQGMLREMVAQG 156

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEE-MANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           C  D  T++TLI+GLC+ G    A  + E+ +  G G        DA  + TII  LC +
Sbjct: 157 CAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMG------NSDA-AFETIIQRLCNK 209

Query: 250 AGS----ANFLGFSCMASFSALNKM----------------AFYFPLVRVQCLCL----N 285
             S    +  LG      F+    M                A+    V ++  C+     
Sbjct: 210 YNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFT 269

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  LI GLCK +++  A++L + +   G  PNVVTY+ +I GLC  GQ+D+   YE +F 
Sbjct: 270 FTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDA--YE-LFQ 326

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI---- 401
           L +R N     P++ T+NILI+  CK  R+     ++ R+  +   PD +T+ SLI    
Sbjct: 327 LMERRNCP---PNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLC 383

Query: 402 KILEINSFFR 411
           K  +++  F+
Sbjct: 384 KSFQVDEAFQ 393



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 147/358 (41%), Gaps = 57/358 (15%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++  R   P V + NIL   L K K  +    L+ R+  TG  PD  TYN LI+  CK  
Sbjct: 327 LMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSF 386

Query: 140 RVS--------------------------HGFVVLGRILRSC----------FTPDAVTF 163
           +V                           HG+  LGR+  +C          F+PD  T+
Sbjct: 387 QVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATY 446

Query: 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           TSLI + C  SR +E   L  ++   G    V T + ++ GL    HT  A+ LF+ MA 
Sbjct: 447 TSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAA 506

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
                   C  DA+ Y+ +++G+ +   S +    + +          F      V    
Sbjct: 507 RG------CTDDALIYNLVVEGMAR--ASKHDKALAVLEQVIDKRDRKFNPSSSAVD--- 555

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
                L++ LC++ K   A++L   +   G    V +YN L+ GL    + DE       
Sbjct: 556 ----ALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQ---- 607

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +F+ + S G  P++ T N++I+  C   +V   + +  R+      PD  T  +LI
Sbjct: 608 --VFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLI 663



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 135/315 (42%), Gaps = 60/315 (19%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  FN++     K K  D+   L + +   G  P+ +T+ ILI   CK  RV     +
Sbjct: 230 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQL 289

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L +++    +P+ VT++++I  LC + ++ +A  LF  +    C  +V T+N LI+GLC+
Sbjct: 290 LEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCK 349

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A  L+  M     E G  C PD ITY+++IDGLCK              SF   
Sbjct: 350 AKRIEEARQLYHRMR----ETG--CAPDIITYNSLIDGLCK--------------SF--- 386

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL-MPNVVTYNILIR 326
                                         ++  A +LFQ++P +G+   N VTY+ L  
Sbjct: 387 ------------------------------QVDEAFQLFQTIPESGVSAANAVTYSTLFH 416

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G    G+M +         +F  L   G  PDL TY  LI  +CK  R      +   + 
Sbjct: 417 GYAALGRMADACR------IFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMA 470

Query: 387 PSCFTPDAVTFTSLI 401
              F P   T ++++
Sbjct: 471 SKGFPPRVNTLSAVL 485



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT 119
           EG   +   ++AL V + +++ R  +  P  ++ + L   L +    D    L  +++  
Sbjct: 521 EGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSER 580

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G      +YN L++   ++ R      V   ++ +   P+  T   +I  LC+ +++ +A
Sbjct: 581 GFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDA 640

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L  ++   GC  D+ T NTLI G C++G   +A  L EEM     E G+  EP+  T+
Sbjct: 641 YELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMT----EAGL--EPNDTTH 694

Query: 240 S 240
            
Sbjct: 695 D 695



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 60/235 (25%)

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
           LC  +R  EA ALF       C  + FTY  LI G    G   +A+ L EEM +      
Sbjct: 32  LCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSG---- 87

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCL 289
              E +A+ ++T                                               L
Sbjct: 88  --FEGNAVVHTT-----------------------------------------------L 98

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           + GLC   ++  A E F+++ +    P+V+TY  L+  LC  G+ DE +       + + 
Sbjct: 99  MKGLCDAGRVVEALEHFRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQG------MLRE 151

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + + G  PD  T++ LI+  CK G     F +   ++          F ++I+ L
Sbjct: 152 MVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRL 206


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 147/329 (44%), Gaps = 28/329 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   + NI+     K    D   +   ++  +G  PD  TYN LIN +CK G +   F 
Sbjct: 380 KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFR 439

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            +  + R     D+VT  ++++ LC E ++ EA  L +  R  G  +D  +Y TLI G  
Sbjct: 440 TMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYF 499

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G+   AL L++EM     E  ++  P  +TY+ II GLC+           C  +  A
Sbjct: 500 KDGNVDRALKLWDEMK----EKEII--PSTVTYNCIIGGLCQ-----------CGKTEQA 542

Query: 267 LNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           ++K+     L+    L     +  ++ G C+   ++ A +    +      P+V T NIL
Sbjct: 543 ISKLN---ELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNIL 599

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           +RGLC +G +      E    LF    S G   D  TYN LI   CK GR+   F +   
Sbjct: 600 LRGLCMEGML------EKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSE 653

Query: 385 ILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           +      PD  T+ ++I  L  +   R+ 
Sbjct: 654 MEEKELGPDHYTYNAIITALTDSGRIREA 682



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 167/371 (45%), Gaps = 36/371 (9%)

Query: 37  ATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNIL 96
           + LRLT   +A L+  +    +S          P+ A  +F  M  +R  RP + + N L
Sbjct: 126 SILRLTSPSKALLDTAIGAYVQSG--------QPHHAFQIFKKMKRLRL-RPNLLTCNTL 176

Query: 97  FGCLAKTKHYDTV---LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
              L +     +V      F      G+ P+  T+NI+I  +C   +       L  + +
Sbjct: 177 LNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGK 236

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
              +PD VT+ +++  LC + R+ +A  L   ++  G   +  TYN L+ G C+ G    
Sbjct: 237 YNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKE 296

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
           A N+ E M   N        PD  TY+ +I+GLC E             +F   ++M   
Sbjct: 297 AANVIELMTQNN------LLPDVWTYNMLINGLCNEG--------RIEEAFKLRDEMENL 342

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
             L  V    +++  LI+G  + SK+  A +L + +   G+ PN VT+NI+++  C +G+
Sbjct: 343 KLLPDV----VSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGK 398

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           MD+  +  T      ++  +G  PD  TYN LIN +CK G +   F     +       D
Sbjct: 399 MDDASNTIT------KMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMD 452

Query: 394 AVTFTSLIKIL 404
           +VT  ++++ L
Sbjct: 453 SVTLNTILRTL 463



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 149/341 (43%), Gaps = 43/341 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N +   L K         L   +   GL P+R TYNIL+  +CKMG +     V
Sbjct: 241 PDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANV 300

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  + ++   PD  T+  LI  LC E RI EA  L  ++       DV +YNTLING   
Sbjct: 301 IELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLE 360

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---GSANFL------GF 258
                 A  L EEM+    E GV  +P+A+T++ ++   CKE     ++N +      GF
Sbjct: 361 WSKISEAFKLLEEMS----EKGV--KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGF 414

Query: 259 S-------------CMA-----SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           S             C A     +F  +++M      +++  + LN   ++  LC+  KL+
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMG--RKNMKMDSVTLN--TILRTLCREKKLE 470

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A +L  S  + G   + V+Y  LI G   DG +D          L+  +    + P   
Sbjct: 471 EAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDR------ALKLWDEMKEKEIIPSTV 524

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           TYN +I   C+ G+          +L S   PD  T+ +++
Sbjct: 525 TYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTIL 565



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 72/189 (38%), Gaps = 29/189 (15%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V + NIL   L      +  L LF      G   D  TYN LI   CK GR+   F 
Sbjct: 590 KPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFN 649

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG------CELD------ 194
           +L  +      PD  T+ ++I  L    RI EA    +K+   G       +LD      
Sbjct: 650 LLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQVLQLDXNETVV 709

Query: 195 -----------VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
                         Y+  I  LC  G    A+ +F E    + + G+    D  TY  ++
Sbjct: 710 TSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGE----SKQKGITV--DKSTYINLM 763

Query: 244 DGLCKEAGS 252
           DGL K   S
Sbjct: 764 DGLIKRRKS 772



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 24/164 (14%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL +F+  ++   +   VT +N L   L K    D   +L   +    L PD YTYN +
Sbjct: 611 KALKLFNTWVSKGKAIDTVT-YNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAI 669

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAV-----------------------TFTSLIK 168
           I      GR+      + ++L     P  V                        ++  IK
Sbjct: 670 ITALTDSGRIREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIK 729

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           +LC E +  +A  +F + +  G  +D  TY  L++GL +   +I
Sbjct: 730 ELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIKRRKSI 773


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 151/337 (44%), Gaps = 34/337 (10%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAK-TKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           AL  + YM  M    P V S N+L   L K +   D  L +F+ +   G  PD YTY  L
Sbjct: 139 ALRFYRYMREMGIP-PSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTL 197

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  C++G++     +   +     +P  VT+TSLI  LC    +  A  L  ++   G 
Sbjct: 198 INGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGI 257

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + +VFTY++L++G C++G +  AL L + M +          P+ ITYST++ GLCKE  
Sbjct: 258 KPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRH------LPNMITYSTLVHGLCKEGK 311

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
               +          L   A  +  +            I G C I K   A      +  
Sbjct: 312 LQEAVEILDRMKLQGLRPDAGLYGKI------------ISGFCDICKFHEAANFLDEMVL 359

Query: 312 AGLMPNVVTY-------NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
            G+ PN +T+       NI+++GLC       T+H    F L+  + + G+  D  T++ 
Sbjct: 360 GGISPNRLTWSLHVRIHNIVVQGLC-------TEHPNRAFQLYLSMRTRGISIDAKTFDS 412

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L+N FC  G +     +   ++     PD VT+ +++
Sbjct: 413 LVNYFCNKGDLHKAAHLVDEMVLDGCIPDEVTWNAVV 449



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 115/250 (46%), Gaps = 25/250 (10%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAA-ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
           P   +   LIK LC  S  M+AA  +F ++   GC  D +TY TLINGLCR G    A  
Sbjct: 153 PSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKE 212

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           LF+EM          C P  +TY+++I GLC+             ++   L +MA     
Sbjct: 213 LFKEMETK------ACSPTVVTYTSLIHGLCQSK--------DLDSAIRLLEEMASKG-- 256

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
             ++     +  L+DG CK      A EL   +     +PN++TY+ L+ GLC +G++ E
Sbjct: 257 --IKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQE 314

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                    +  R+   GL PD   Y  +I+ FC I +          ++    +P+ +T
Sbjct: 315 AVE------ILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLT 368

Query: 397 FTSLIKILEI 406
           ++  ++I  I
Sbjct: 369 WSLHVRIHNI 378



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 7/109 (6%)

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLC-NDGQMDETKHYETVFLLFKRLNSTGL 355
           ++LK+A   ++ +   G+ P+V + N+LI+ LC N G MD          +F+ + + G 
Sbjct: 134 NQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMD------AALRIFREMPNRGC 187

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            PD YTY  LIN  C++G++     +F  +     +P  VT+TSLI  L
Sbjct: 188 PPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGL 236


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 37/339 (10%)

Query: 87   RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            +P V + N++   + K K  + V SLF+ ++  G+ P+  T+NILIN  C  G +     
Sbjct: 946  KPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGN 1005

Query: 147  VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            +L ++  + F P  VT+ +L+   C + R   A  L   +   G E DV TYN  I+ LC
Sbjct: 1006 LLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLC 1065

Query: 207  RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASF 264
                +  A  L ++M         +  P+ +TY+T+I+G  KE   G A  + F+ M+ F
Sbjct: 1066 TNHRSAKAYLLLKKMRKE------MISPNEVTYNTLINGFVKEGKIGVAAQV-FNEMSKF 1118

Query: 265  SALNKMAFYFPLVRVQC-------------------LCLN---FLCLIDGLCKISKLKIA 302
                    Y  L+   C                   L LN   +  L++GLCK  K ++A
Sbjct: 1119 DLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELA 1178

Query: 303  RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            + L + +    ++   + Y +LI GLC +G +DE         L   +   G+ PD+ TY
Sbjct: 1179 KRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQ------LVGNMYKDGVNPDVITY 1232

Query: 363  NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + LIN FC++G + S   I  R+  S    + + +++LI
Sbjct: 1233 SSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLI 1271



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 140/331 (42%), Gaps = 27/331 (8%)

Query: 72   EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
            EAL + D+M      R    ++  L   L K + ++    L +R+ +  +      Y +L
Sbjct: 1142 EALRLLDHM-EAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVL 1200

Query: 132  INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
            I+  CK G +     ++G + +    PD +T++SLI   C    I  A  +  ++   G 
Sbjct: 1201 IDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGL 1260

Query: 192  ELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             L+   Y+TLI   C+ G+   A+ ++  M  NG+G        D  T + ++  LC++ 
Sbjct: 1261 VLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHG-------ADHFTCNVLVSSLCRDG 1313

Query: 251  GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                   F C  S   L   +  +             C+I+G   I     A   F  + 
Sbjct: 1314 KLGEAEKFLCHMSRIGLVPNSITYD------------CIINGYGSIGDPLNAFSFFDDMI 1361

Query: 311  RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            + G  P+  TY  L++GLC  G + E K +        RL+      D   YN L+   C
Sbjct: 1362 KCGQHPSFFTYGSLLKGLCKGGNLVEAKKF------LNRLHYIPGAVDSVMYNTLLAETC 1415

Query: 371  KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            K G +     +F +++ +   PD+ T++SL+
Sbjct: 1416 KSGNLHEAVALFDKMVQNNVLPDSYTYSSLL 1446



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 147/355 (41%), Gaps = 53/355 (14%)

Query: 92   SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
            ++ +L   L K    D  + L   +   G+ PD  TY+ LIN FC++G +     ++ R+
Sbjct: 1196 AYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRM 1255

Query: 152  LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
             RS    + + +++LI + C    + EA  ++  +   G   D FT N L++ LCR G  
Sbjct: 1256 YRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKL 1315

Query: 212  IVALNLFEEMA---------------NGNGEFG------------VVC--EPDAITYSTI 242
              A      M+               NG G  G            + C   P   TY ++
Sbjct: 1316 GEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSL 1375

Query: 243  IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
            + GLCK        G + + +   LN++  Y P   V  +  N   L+   CK   L  A
Sbjct: 1376 LKGLCK--------GGNLVEAKKFLNRL-HYIPGA-VDSVMYN--TLLAETCKSGNLHEA 1423

Query: 303  RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
              LF  + +  ++P+  TY+ L+ GLC  G     K    V L    +    LFP+   Y
Sbjct: 1424 VALFDKMVQNNVLPDSYTYSSLLTGLCRKG-----KAVTAVCLFGTAMGRGTLFPNHVMY 1478

Query: 363  NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFF 410
              L++   K G   + F  F  ++     PD V F ++I       ++++ N FF
Sbjct: 1479 TCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFF 1533



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 145/360 (40%), Gaps = 34/360 (9%)

Query: 57   CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
            C  +G G I    P  A   FD M+      P   ++  L   L K  +         RL
Sbjct: 1339 CIINGYGSIGD--PLNAFSFFDDMIKC-GQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRL 1395

Query: 117  NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
            +      D   YN L+   CK G +     +  +++++   PD+ T++SL+  LC + + 
Sbjct: 1396 HYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKA 1455

Query: 177  MEAAALFTKLRVFGCEL-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
            + A  LF      G    +   Y  L++GL + GH   A   FEEM          C PD
Sbjct: 1456 VTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKG-----TC-PD 1509

Query: 236  AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDG 292
             + ++ IID  C   G               + K   +F  +R   +C N   +  L+ G
Sbjct: 1510 TVAFNAIIDS-CSRRGQ--------------MMKANDFFSTMRWWGVCPNLATYNILLHG 1554

Query: 293  LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
              K   L     L+ ++ R G+ P+ +T++ LI GL   G  D          L  ++  
Sbjct: 1555 FSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPD------LGVKLLGKMIM 1608

Query: 353  TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
             G   D +T+NILIN + + G++   F +   +      PD  T+  +   L   S FR+
Sbjct: 1609 EGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRE 1668



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 145/372 (38%), Gaps = 78/372 (20%)

Query: 100  LAKTKHYDTVLSLFKRL--------NLTGLFPDRY--------TYNILINCFCKMGRVSH 143
            L K + YD+  S+ + L        ++ G   D Y         +++LI  + K G + +
Sbjct: 873  LVKARMYDSAKSILRHLCQMGIGSKSIFGALMDTYPLCNSIPSVFDLLIRVYLKEGMIDY 932

Query: 144  GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
                   +    F P   T   ++  +  + R     +LF ++   G   +V T+N LIN
Sbjct: 933  AVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILIN 992

Query: 204  GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN--------- 254
            GLC  G+   A NL ++M     E G V  P  +TY+T+++  CK+              
Sbjct: 993  GLCVEGNLKKAGNLLKQME----ENGFV--PTIVTYNTLLNWYCKKGRYKAAIELIDYMI 1046

Query: 255  -------------FLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISK 298
                         F+   C    SA  K       +R + +  N   +  LI+G  K  K
Sbjct: 1047 CKGIEADVCTYNVFIDNLCTNHRSA--KAYLLLKKMRKEMISPNEVTYNTLINGFVKEGK 1104

Query: 299  LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET--------------------- 337
            + +A ++F  + +  L PN VTYN LI G C+ G  +E                      
Sbjct: 1105 IGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGT 1164

Query: 338  ------KH--YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                  KH  +E    L +R+    +      Y +LI+  CK G +     + G +    
Sbjct: 1165 LLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDG 1224

Query: 390  FTPDAVTFTSLI 401
              PD +T++SLI
Sbjct: 1225 VNPDVITYSSLI 1236



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 147/360 (40%), Gaps = 32/360 (8%)

Query: 45   DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
            D       L E CKS   G++     +EA+ +FD M+         T  ++L G   K K
Sbjct: 1403 DSVMYNTLLAETCKS---GNL-----HEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGK 1454

Query: 105  HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
                V      +    LFP+   Y  L++   K G     F     +++    PD V F 
Sbjct: 1455 AVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFN 1514

Query: 165  SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
            ++I       ++M+A   F+ +R +G   ++ TYN L++G  +    +  L+L+  M   
Sbjct: 1515 AIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMR- 1573

Query: 225  NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL 284
             G F     PD +T+ ++I GL K +G  + LG   +        +A  F          
Sbjct: 1574 EGIF-----PDKLTFHSLILGLSK-SGIPD-LGVKLLGKMIMEGTLADQF---------- 1616

Query: 285  NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
             F  LI+   +  K++ A +L   +   G+ P+  TYN +  GL       E+       
Sbjct: 1617 TFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFREST------ 1670

Query: 345  LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            ++   +   G+ P    Y  LIN  C++G +   F +   +    F    V  +++++ L
Sbjct: 1671 VVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGL 1730



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 131/315 (41%), Gaps = 26/315 (8%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P + ++NIL    +K +     LSL+  +   G+FPD+ T++ LI    K G    G  +
Sbjct: 1543 PNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKL 1602

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            LG+++      D  TF  LI       ++ +A  L   +   G   D  TYN + NGL +
Sbjct: 1603 LGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNK 1662

Query: 208  TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                  +  +  EM     E GV+  P    Y T+I+G+C+              +F   
Sbjct: 1663 KSAFRESTVVLHEML----ENGVI--PKHAQYITLINGMCRVG--------DIQGAFKLK 1708

Query: 268  NKM-AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            ++M A  F    V         ++ GL    K + A  +   + R  L+P + T+  L+ 
Sbjct: 1709 DEMEALGFGSHEVA-----ESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMH 1763

Query: 327  GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
              C D ++ E    + V  L       GL  D+  YN+LI   C  G  ++ F ++  + 
Sbjct: 1764 RFCRDAKIAEALKLKGVMEL------CGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMR 1817

Query: 387  PSCFTPDAVTFTSLI 401
                 P+  T+  L+
Sbjct: 1818 HRDLCPNITTYAVLV 1832



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 41/194 (21%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF-- 145
            P   ++N +F  L K   +     +   +   G+ P    Y  LIN  C++G +   F  
Sbjct: 1648 PDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKL 1707

Query: 146  ---------------------------------VVLGRILRSCFTPDAVTFTSLIKDLCA 172
                                             +VL  +LR    P   TFT+L+   C 
Sbjct: 1708 KDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCR 1767

Query: 173  ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
            +++I EA  L   + + G +LDV  YN LI G+C  G +  A  L+EEM + +     +C
Sbjct: 1768 DAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRD-----LC 1822

Query: 233  EPDAITYSTIIDGL 246
             P+  TY+ ++D +
Sbjct: 1823 -PNITTYAVLVDAI 1835



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 1/119 (0%)

Query: 72   EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
            +A+ V D+ML MR   P + +F  L     +       L L   + L GL  D   YN+L
Sbjct: 1738 DAMLVLDHMLRMRL-LPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVL 1796

Query: 132  INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I   C  G  +  F +   +      P+  T+  L+  + A + +++   L T L+  G
Sbjct: 1797 IMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQERG 1855


>gi|359488082|ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Vitis vinifera]
          Length = 498

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 144/319 (45%), Gaps = 26/319 (8%)

Query: 83  MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142
           M    P + ++N+L G L K     T + L   ++L+G  PD  TYN ++ C    G   
Sbjct: 102 MSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGFD 161

Query: 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
                    LR       +T+T LI+ +C     ++A  +   + + GC  D+ TYN+L+
Sbjct: 162 QAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLV 221

Query: 203 NGLCRTG-HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           N  C+ G +   AL ++  +++G G       P+ +TY+T++  LC              
Sbjct: 222 NYTCKQGKYEDTALIIYNLLSHGMG-------PNTVTYNTLLHSLCTHG----------- 263

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
             +  ++++             + +  LI+GLCK   L  A   F  +     +P+++TY
Sbjct: 264 -YWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITY 322

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           N L+  LC +G +DE  H      L   LN T   P L TYNI+I+   K G +     +
Sbjct: 323 NTLLAALCKEGMVDEALH------LLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMEL 376

Query: 382 FGRILPSCFTPDAVTFTSL 400
           +G ++   F PD +T  +L
Sbjct: 377 YGEMIERGFAPDDITHRTL 395



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 123/276 (44%), Gaps = 28/276 (10%)

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI    K+        VL  ++ S   PD +T+  L+  LC +  +  A  L  ++ + G
Sbjct: 80  LIRGLIKLESTERATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSG 139

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  D  TYNT++  +   G    A+  +++           C    ITY+ +I+ +CK  
Sbjct: 140 CPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKG------CPAYLITYTVLIELVCKHC 193

Query: 251 GSANFLGFSCMASFSALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           G+        + +   L  MA    +P +      + +  L++  CK  K +    +  +
Sbjct: 194 GT--------VQAMEVLEDMAIEGCYPDI------VTYNSLVNYTCKQGKYEDTALIIYN 239

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   G+ PN VTYN L+  LC  G  DE    + + L+   +N+T   P + TYNILIN 
Sbjct: 240 LLSHGMGPNTVTYNTLLHSLCTHGYWDEV---DEILLI---MNTTSQPPTVVTYNILING 293

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            CK G +      F +++     PD +T+ +L+  L
Sbjct: 294 LCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAAL 329



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 18/252 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   L    ++D V  +   +N T   P   TYNILIN  CK G +      
Sbjct: 247 PNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINF 306

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++     PD +T+ +L+  LC E  + EA  L   L    C   + TYN +I+GL +
Sbjct: 307 FDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAK 366

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A+ L+ EM     E G    PD IT+ T+  GL +       L    +     +
Sbjct: 367 KGCMEKAMELYGEMI----ERGFA--PDDITHRTLFWGLFRLD-----LVEDALVILKEM 415

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           NK        R++     F  +I GLCK  K+ IA ++ + +  +   PN   Y+ +I+G
Sbjct: 416 NKRN-----QRIKNSAFRF--VIHGLCKKKKVDIAIQVLEMMVSSQCKPNEEIYSAIIKG 468

Query: 328 LCNDGQMDETKH 339
           +   G ++E   
Sbjct: 469 VGAAGMIEEANQ 480



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 29/154 (18%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET----------- 337
           L+ GLCK   LK A EL   +  +G  P+ +TYN ++R + + G  D+            
Sbjct: 115 LVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKG 174

Query: 338 ----------------KHYETV--FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                           KH  TV    + + +   G +PD+ TYN L+N  CK G+     
Sbjct: 175 CPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTA 234

Query: 380 VIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           +I   +L     P+ VT+ +L+  L  + ++ +V
Sbjct: 235 LIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEV 268



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           ++  LC   KL  A  L   + R   +P   +   LIRGL    +++ T   E    + K
Sbjct: 45  ILQNLCSKGKLVNASRLIDVMARRNQIPYFPSCINLIRGLI---KLEST---ERATRVLK 98

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            +  +G  PD+ TYN+L+   CK G + +   +   +  S   PDA+T+ ++++ +  + 
Sbjct: 99  IMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHG 158

Query: 409 FFRQ 412
            F Q
Sbjct: 159 GFDQ 162


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 151/345 (43%), Gaps = 51/345 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +   + ++ + +     F  +   GL PD  TYN LIN +CK G +     +
Sbjct: 335 PTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWL 394

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            G + R+   P  +T+  L+   C    + EA     ++   GC+ DV TY  L+NG  +
Sbjct: 395 FGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRK 454

Query: 208 TGHTIVALNLFEEMANGNGE---------------FGVVCEP--------------DAIT 238
             +  +    F+EM +   +                G   E               D +T
Sbjct: 455 VRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVT 514

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR--VQCLCLNFLCLIDGLCKI 296
           Y+  +DGLCK   S N             +    +  +V   +Q  C+ + CLI   C+ 
Sbjct: 515 YNIFLDGLCK---SGNL-----------KDAYVLWMKMVSDGLQPDCITYTCLIHAHCER 560

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            +L+ AR++F  +  +GL P+ VTY + I   C  G +       + +  F+++   G+ 
Sbjct: 561 GRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNL------YSAYGWFQKMLEEGVR 614

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           P+  TYN+LI+  C++GR +  +  F  +L    +P+  T+T LI
Sbjct: 615 PNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLI 659



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 144/322 (44%), Gaps = 38/322 (11%)

Query: 88  PP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           PP +   N++   L     +D + S++  +   G+ P   TYN L++ F + GRV     
Sbjct: 193 PPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAK 252

Query: 147 VLGRILR---SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
           +L  +      C  P  VT+  +I  L  +  + +AA L  ++R+   +   FT+N LI 
Sbjct: 253 LLREMEARPGGCL-PSDVTYNVVINGLARKGELEKAAQLVDRMRM-SKKASAFTFNPLIT 310

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFS 259
           G    G    A  L  EM N     G+V  P  +TY+TII G+ +    EA    F+   
Sbjct: 311 GYFARGSVEKAGALQLEMENE----GIV--PTVVTYNTIIHGMFRSGNVEAARMKFVEMR 364

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            M     L                + +  LI+G CK   LK A  LF  L RAGL P+V+
Sbjct: 365 AMGLLPDL----------------ITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVL 408

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TYNIL+ G C  G ++E + ++      + +   G  PD+ TY IL+N   K+  ++   
Sbjct: 409 TYNILLDGYCRLGDLEEARRFK------QEMVEQGCQPDVSTYTILMNGSRKVRNLAMVR 462

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
             F  +L     PD   + + I
Sbjct: 463 EFFDEMLSKGLQPDCFAYNTRI 484



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 120/283 (42%), Gaps = 24/283 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V+++ IL     K ++   V   F  +   GL PD + YN  I+    +G  S  F 
Sbjct: 439 QPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQ 498

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   ++    + D VT+   +  LC    + +A  L+ K+   G + D  TY  LI+  C
Sbjct: 499 LTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHC 558

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A ++F+ M            P A+TY+  I   C+         +S    F  
Sbjct: 559 ERGRLREARDIFDGMLVSG------LPPSAVTYTVFIHAYCRRGNL-----YSAYGWFQK 607

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           + +       VR   +  N   LI  LC++ +  +A + F  +   GL PN  TY +LI 
Sbjct: 608 MLEEG-----VRPNEVTYN--VLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLID 660

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
           G C +G      ++E    L+  ++  G+ PD  T+N L   F
Sbjct: 661 GNCKEG------NWEEAIRLYSEMHQHGIHPDHCTHNALFKGF 697



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 103/228 (45%), Gaps = 22/228 (9%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G+  D  TYNI ++  CK G +   +V+  +++     PD +T+T LI   C   R+ EA
Sbjct: 507 GISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREA 566

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             +F  + V G      TY   I+  CR G+   A   F++M     E GV   P+ +TY
Sbjct: 567 RDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKML----EEGV--RPNEVTY 620

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR-VQCLCLNFLCLIDGLCKISK 298
           + +I  LC+  G  N            L    F+  L R +      +  LIDG CK   
Sbjct: 621 NVLIHALCR-MGRTN------------LAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGN 667

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY-ETVFL 345
            + A  L+  + + G+ P+  T+N L +G  ++GQ      Y E V L
Sbjct: 668 WEEAIRLYSEMHQHGIHPDHCTHNALFKGF-DEGQSKHAIQYMENVVL 714



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 86/180 (47%), Gaps = 7/180 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + + M++   S   VT +NI    L K+ +      L+ ++   GL PD  TY  
Sbjct: 494 SEAFQLTEVMISRGISSDTVT-YNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTC 552

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C+ GR+     +   +L S   P AVT+T  I   C    +  A   F K+   G
Sbjct: 553 LIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEG 612

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +  TYN LI+ LCR G T +A   F EM     E G+   P+  TY+ +IDG CKE 
Sbjct: 613 VRPNEVTYNVLIHALCRMGRTNLAYQHFHEML----ERGL--SPNKYTYTLLIDGNCKEG 666


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 131/281 (46%), Gaps = 24/281 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V SFN L     +    D    L   ++ +G+ PD YTY++LIN  CK  ++     
Sbjct: 157 RPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANE 216

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L     P+ VTFT+LI   C   R+  A  ++ ++       D+ TYNTLI GLC
Sbjct: 217 LFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLC 276

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A +L +EM+          +PD ITY+T+IDG CKE             +F  
Sbjct: 277 KKGDLKQAHDLIDEMSMKG------LKPDKITYTTLIDGCCKEG--------DLETAFEH 322

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +M        ++   + +  LI GLC+  +   A ++ + +  AGL P+  TY ++I 
Sbjct: 323 RKRMI----QENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIIN 378

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
             C  G +       T   L K +   G  P + TYN+L+N
Sbjct: 379 EFCKKGDV------WTGSKLLKEMQRDGHVPSVVTYNVLMN 413



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 152/310 (49%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + ++G +  GF +   + 
Sbjct: 128 FNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 187

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C++G   
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVD 247

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             +   +++M+ 
Sbjct: 248 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKG--------DLKQAHDLIDEMS- 292

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 293 ---MKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEG 349

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V +G  +   +      
Sbjct: 350 RYLDAEK-------VLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHV 402

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 403 PSVVTYNVLM 412



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 138/302 (45%), Gaps = 24/302 (7%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           + K K++  V   ++ +   G     Y +NIL++ FCK G +     V   I +    P 
Sbjct: 100 MMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPS 159

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V+F +L+        + E   L + +   G + DV+TY+ LINGLC+      A  LF+
Sbjct: 160 VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 219

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM +     G+V  P+ +T++T+IDG CK +G  +      M  +  +   +    L+  
Sbjct: 220 EMLDK----GLV--PNGVTFTTLIDGHCK-SGRVDL----AMEIYKQMLSQSLSPDLI-- 266

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                 +  LI GLCK   LK A +L   +   GL P+ +TY  LI G C +G +     
Sbjct: 267 -----TYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDL----- 316

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
            ET F   KR+    +  D   Y  LI+  C+ GR      +   +L +   PD  T+T 
Sbjct: 317 -ETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTM 375

Query: 400 LI 401
           +I
Sbjct: 376 II 377



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 36/178 (20%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G   S   + A+ ++  ML+   S P + ++N L   L K         L   +++ GL
Sbjct: 238 DGHCKSGRVDLAMEIYKQMLSQSLS-PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGL 296

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD+ TY  LI+  CK G +   F    R+++     D V +T+LI  LC E R ++A  
Sbjct: 297 KPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEK 356

Query: 182 LFTKLRVFGCELD-----------------------------------VFTYNTLING 204
           +  ++   G + D                                   V TYN L+NG
Sbjct: 357 VLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 29/142 (20%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK---------- 338
           +++ + K+   K+    ++ +   G   ++  +NIL+   C +G +   +          
Sbjct: 96  VLEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWG 155

Query: 339 -------------------HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                                +  F L   ++++G+ PD+YTY++LIN  CK  ++    
Sbjct: 156 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 215

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  +L     P+ VTFT+LI
Sbjct: 216 ELFDEMLDKGLVPNGVTFTTLI 237


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 155/328 (47%), Gaps = 35/328 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N +     K     + L +   +   G+  D YTYNI+I+  CK+ R +  +++
Sbjct: 262 PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLL 321

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L R+     TPD  ++ +LI     E +I  A  +F ++     +  V TY  LI+G CR
Sbjct: 322 LKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCR 381

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G T  A  +  EM       GV   P  +TYS +++G CK +     LG        AL
Sbjct: 382 NGRTDEARRVLYEMQIT----GV--RPSELTYSALLNGYCKHSK----LG-------PAL 424

Query: 268 NKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           + + +    +R + + +N   +  LIDG C++ ++  A+++ + +   G+ P+V+TY+ L
Sbjct: 425 DLIKY----LRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSAL 480

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I G+C  G + ETK       +  R+  +G+ P+   Y  L+  FCK G        F  
Sbjct: 481 INGMCKMGMIHETKE------ILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVD 534

Query: 385 ILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           I  S    ++V   +L     + SF+R+
Sbjct: 535 IYRSGLVANSVIHNAL-----LCSFYRE 557



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 164/394 (41%), Gaps = 66/394 (16%)

Query: 61  GEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG 120
           GEG I     N A+ +F+ ML  +  +P V ++  L     +    D    +   + +TG
Sbjct: 346 GEGKI-----NLAIYIFNQMLR-QSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITG 399

Query: 121 LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180
           + P   TY+ L+N +CK  ++     ++  +     + +   +T LI   C    + +A 
Sbjct: 400 VRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAK 459

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
            +   +   G + DV TY+ LING+C+ G       +   M       GV+  P+ + Y+
Sbjct: 460 QILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKS----GVL--PNNVLYT 513

Query: 241 TIIDGLCKEAGSANFLGF-----------------SCMASF------SALNKMAFYFPLV 277
           T++   CK   +   L +                 + + SF      +   +   Y   +
Sbjct: 514 TLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRM 573

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           ++     +F C+ID  C+   +  A  ++ ++ R G  P++ TY  L+RGLC  G + + 
Sbjct: 574 KISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQA 633

Query: 338 KHYETVFLLFK------------------------------RLNSTGLFPDLYTYNILIN 367
           K +  V+LL K                              ++ +  + PD YTY IL++
Sbjct: 634 KEF-MVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLD 692

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            FCK G+V    ++   +L     PD + +T L+
Sbjct: 693 GFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLL 726



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 147/315 (46%), Gaps = 39/315 (12%)

Query: 112 LFKRLNLTGLFP-DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
           LF + +L   FP D  T NI++N  C  G++S    +L + +++C  P+AVT+ +++   
Sbjct: 216 LFLKESLDRKFPLDVTTCNIVLNSLCTQGKLSKAESMLQK-MKNCRLPNAVTYNTILNWY 274

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
             + R   A  +   +   G E D++TYN +I+ LC+   +  A  L + M   N     
Sbjct: 275 VKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVN----- 329

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGF-----------SCMASFSAL------------ 267
              PD  +Y+T+I G   E G  N   +             +A+++AL            
Sbjct: 330 -LTPDECSYNTLIHGFFGE-GKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDE 387

Query: 268 -NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             ++ +   +  V+   L +  L++G CK SKL  A +L + L    +  N   Y ILI 
Sbjct: 388 ARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILID 447

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C  G++ + K       + K + + G+ PD+ TY+ LIN  CK+G +     I  R+ 
Sbjct: 448 GFCQLGEVSKAKQ------ILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQ 501

Query: 387 PSCFTPDAVTFTSLI 401
            S   P+ V +T+L+
Sbjct: 502 KSGVLPNNVLYTTLV 516



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 146/342 (42%), Gaps = 47/342 (13%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++NI+   L K K       L KR+    L PD  +YN LI+ F   G+++    +  ++
Sbjct: 301 TYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQM 360

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           LR    P   T+T+LI   C   R  EA  +  ++++ G      TY+ L+NG C+    
Sbjct: 361 LRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKL 420

Query: 212 IVALNLFEE---------------MANGNGEFGVVC--------------EPDAITYSTI 242
             AL+L +                + +G  + G V               +PD ITYS +
Sbjct: 421 GPALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSAL 480

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           I+G+CK       +        S + K       V    L   F       CK    K A
Sbjct: 481 INGMCKMG-----MIHETKEILSRMQKSGVLPNNVLYTTLVFYF-------CKAGHAKEA 528

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            + F  + R+GL+ N V +N L+     +G + E + ++      + ++   +  D+ ++
Sbjct: 529 LKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFK------QYMSRMKISFDVASF 582

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           N +I+ +C+ G V   F ++  ++   + PD  T+ SL++ L
Sbjct: 583 NCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGL 624



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 142/323 (43%), Gaps = 33/323 (10%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           + N L   + K    D  L L +++    + PD YTY IL++ FCK G+V    ++L  +
Sbjct: 651 TLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMM 710

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV-FGCELDVFTYNTLINGLCRTGH 210
           L     PD + +T L+  L  E ++  A+ +F ++    G   D   YN+++NG  + G 
Sbjct: 711 LEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQ 770

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
               +N  E +     E  V   P + +Y+ ++ G  K+   +  L              
Sbjct: 771 ----INEIERLMRNMHENEVY--PSSASYNILMHGYIKKGQLSRTL-------------- 810

Query: 271 AFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
             Y  +V+  ++   + +  LI GLC+   ++IA +  + +   G+ P+ + ++ILI+  
Sbjct: 811 YLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAF 870

Query: 329 CNDGQMDETKHY----------ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
               +M                +  F L + + + G+ P     + ++   CK G+V   
Sbjct: 871 SEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEA 930

Query: 379 FVIFGRILPSCFTPDAVTFTSLI 401
            ++F  I+ +   P   TFT+L+
Sbjct: 931 IIVFSSIMRAGMVPTIATFTTLM 953



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 141/353 (39%), Gaps = 45/353 (12%)

Query: 67  SITPNEALCVF-------------DYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLF 113
           S+  N  LC F              YM  M+ S   V SFN +     +  +     S++
Sbjct: 544 SVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFD-VASFNCIIDSYCQRGNVLEAFSVY 602

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
             +   G  PD  TY  L+   C+ G +      +  +L      D  T  +L+  +C  
Sbjct: 603 DNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKH 662

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
             + EA  L  K+       D +TY  L++G C+ G  + AL L + M     E G+V  
Sbjct: 663 GTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMML----EKGLV-- 716

Query: 234 PDAITYSTIIDGLCKE----AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCL 289
           PD I Y+ +++GL  E    A S  F    C     A                C+ +  +
Sbjct: 717 PDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYA---------------DCIAYNSM 761

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           ++G  K  ++     L +++    + P+  +YNIL+ G    GQ+  T        L++ 
Sbjct: 762 MNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRT------LYLYRD 815

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +   G+ PD  TY +LI   C+ G +        +++     PD + F  LIK
Sbjct: 816 MVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIK 868



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 141/337 (41%), Gaps = 50/337 (14%)

Query: 80   MLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK 137
            M NM  +   P   S+NIL     K       L L++ +   G+ PD  TY +LI   C+
Sbjct: 778  MRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCE 837

Query: 138  MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFT 197
             G +      L +++     PD + F  LIK    +S++  A  LF+ ++  G       
Sbjct: 838  YGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGD------ 891

Query: 198  YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
                I+G         A  L E+M       GVV  P  +  S+I+ GLCK  G      
Sbjct: 892  ----IDG---------AFELKEDMK----ALGVV--PSEVAESSIVRGLCK-CGKVE--- 928

Query: 258  FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
               +  FS++ + A   P +        F  L+ GLCK  K+  A  L Q +   GL  +
Sbjct: 929  -EAIIVFSSIMR-AGMVPTIAT------FTTLMHGLCKEFKIDDAFHLKQLMESCGLKVD 980

Query: 318  VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
            VVTYN+LI GLCN       K       L++ + S GL P++ TY  L       G +  
Sbjct: 981  VVTYNVLITGLCN------KKCICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQD 1034

Query: 378  GFVIFGR-----ILPSCFTPDAVTFTSLIKILEINSF 409
            G  +        I+PS   P+++ +     I  +N+ 
Sbjct: 1035 GEKLLKDIEDRGIVPSYKHPESLEWRMENAIKRLNTI 1071



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 6/171 (3%)

Query: 76   VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
             FD ++     +  +++   LF  +      D    L + +   G+ P     + ++   
Sbjct: 862  AFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGL 921

Query: 136  CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            CK G+V    +V   I+R+   P   TFT+L+  LC E +I +A  L   +   G ++DV
Sbjct: 922  CKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDV 981

Query: 196  FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
             TYN LI GLC       AL+L+EEM +     G++  P+  TY T+   +
Sbjct: 982  VTYNVLITGLCNKKCICDALDLYEEMKSK----GLL--PNITTYITLTGAM 1026


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 154/340 (45%), Gaps = 56/340 (16%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N L   LA+    D +  L+  +    +  D YT+N++IN +CKMG V      + +++
Sbjct: 160 YNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMI 219

Query: 153 RSCFTPD-------------------------------AVTFTSLIKDLCAESRIMEAAA 181
           ++  +PD                                V++  LI  LC   RI EA +
Sbjct: 220 QAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVS 279

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           LF +++   C  +V+TY  LI GLCR  +   A+ L +EM   N        PD ITY++
Sbjct: 280 LFVRMKDDCCYPNVYTYTALIKGLCRK-NVHKAMGLLDEMLERN------LVPDLITYNS 332

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +I G C+ AG              +L K     P  R       + C ID LCK ++++ 
Sbjct: 333 LIAGQCR-AGH-----LDSAYRLLSLMKERGLVPDQRT------YGCFIDFLCKSNRVEE 380

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           AR LF SL   G+  NV+ Y++LI G C  G++DE         LF+++ S    P+ YT
Sbjct: 381 ARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAG------CLFEKMLSKNCSPNAYT 434

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +N LI+  C  G +     +F +++     P   TF  LI
Sbjct: 435 FNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILI 474



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 138/317 (43%), Gaps = 25/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++  L   L + K+    + L   +    L PD  TYN LI   C+ G +   + +
Sbjct: 291 PNVYTYTALIKGLCR-KNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRL 349

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      PD  T+   I  LC  +R+ EA  LF  L   G   +V  Y+ LI+G C+
Sbjct: 350 LSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCK 409

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  LFE+M + N      C P+A T++ +I GLC  AG+        ++ F  +
Sbjct: 410 VGKVDEAGCLFEKMLSKN------CSPNAYTFNALIHGLCS-AGNLK----EALSLFDQM 458

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            KM    P V        F  LI  + K      A +  Q +  +G  P   TYN  I  
Sbjct: 459 VKMGLK-PTV------YTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEV 511

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C+ G++ E +       +  ++   G+ PD +TY  LI  + K+G   S F +   +  
Sbjct: 512 YCSAGKVQEAED------MMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFD 565

Query: 388 SCFTPDAVTFTSLIKIL 404
           +   P   TF SLIK L
Sbjct: 566 ADCEPSHHTFLSLIKQL 582



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 139/331 (41%), Gaps = 31/331 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA C+F+ ML+   S P   +FN L   L    +    LSLF ++   GL P  YT+NI
Sbjct: 414 DEAGCLFEKMLSKNCS-PNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNI 472

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI    K G        L +++ S   P A T+ + I+  C+  ++ EA  +  +++  G
Sbjct: 473 LIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEG 532

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D FTY +LI    + G T  A ++ + M      F   CEP   T+ ++I  L  + 
Sbjct: 533 VPPDDFTYTSLIKAYGKLGLTYSAFDVLKSM------FDADCEPSHHTFLSLIKQLFDKR 586

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                 G + + S S    +                      + K+ +  I  ELF+ + 
Sbjct: 587 YVVEKSGETGVESVSNFGDVPG------------------SNMWKMMEFDIVIELFEEME 628

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           + G  P+   Y  LI G+C      + ++      L  ++   G+ P    +N +I+C C
Sbjct: 629 KHGCTPDSKCYEKLISGIC------KVENLGIALKLLDQMQKEGISPSEMVFNAVISCCC 682

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K+ +      I   ++ S  +P      +LI
Sbjct: 683 KLQKYGEAANIVEDMICSGHSPQLEHCKTLI 713



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 58/141 (41%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    +  L   + K ++    L L  ++   G+ P    +N +I+C CK+ +      +
Sbjct: 634 PDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANI 693

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  ++ S  +P      +LI  L  E       ++F KLR  G   D   +  LI+G+ +
Sbjct: 694 VEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLK 753

Query: 208 TGHTIVALNLFEEMANGNGEF 228
            G       LFEEM      F
Sbjct: 754 QGLVEEFSQLFEEMEKNGCNF 774



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  +I+  CK+  +K A++    + +AGL P+  T    I G C       +K  ++ F 
Sbjct: 195 FNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCR------SKDVDSAFR 248

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +F+ + +     +  +YN LI+  C+ GR+     +F R+   C  P+  T+T+LIK L
Sbjct: 249 VFEEMPNR----NEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGL 303


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 148/310 (47%), Gaps = 25/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N L   L K       + LFK        P+ +T+NILI   C++G V  GF +   + 
Sbjct: 166 YNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQ 225

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG-CELDVFTYNTLINGLCRTGHT 211
                PD VT+ +LI  LC  + +  A  L  +++    C  DV TY ++I+G  + G  
Sbjct: 226 SFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKL 285

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A  LFEEM           EP  +T++ +IDG  K       +G + +A+ +   KMA
Sbjct: 286 EAASVLFEEMIRSG------IEPTVVTFNVLIDGFGK-------IG-NMVAAEAMHEKMA 331

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
            Y  +  V    + F  LIDG C+   +++  +++  +    + PN+ TY+++I  LC D
Sbjct: 332 SYSCIPDV----VTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKD 387

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
            ++ E +       L ++L  + +FP  + YN +I+ FCK G V    VI   +      
Sbjct: 388 NRIHEARD------LLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCR 441

Query: 392 PDAVTFTSLI 401
           PD VTFT LI
Sbjct: 442 PDKVTFTILI 451



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 152/331 (45%), Gaps = 26/331 (7%)

Query: 76  VFDYMLNMRPSRPPVT-SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           +F +  N+    PP T +FNIL   L +    +    LF  +   G  PD  TYN LI+ 
Sbjct: 183 IFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISG 242

Query: 135 FCKMGRVSHGFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
            CK   +     +L  +  R+  +PD +T+TS+I       ++  A+ LF ++   G E 
Sbjct: 243 LCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEP 302

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
            V T+N LI+G  + G+ + A  + E+MA+ +      C PD +T++++IDG C+     
Sbjct: 303 TVVTFNVLIDGFGKIGNMVAAEAMHEKMASYS------CIPDVVTFTSLIDGYCRTGDIR 356

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
             LG        A N          V      +  +I+ LCK +++  AR+L + L  + 
Sbjct: 357 --LGLKVWDVMKARN----------VSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSD 404

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           + P    YN +I G C  G +DE        ++   +      PD  T+ ILI   C  G
Sbjct: 405 VFPKPFIYNPVIDGFCKAGNVDEAN------VIVTEMEEKRCRPDKVTFTILIIGHCMKG 458

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           R+     IF ++L     PD +T +SL+  L
Sbjct: 459 RMVEALDIFKKMLAIGCAPDNITISSLVACL 489



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 133/302 (44%), Gaps = 39/302 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           P V ++N L   L K    D    L K + +     PD  TY  +I+ F K+G++    V
Sbjct: 231 PDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASV 290

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   ++RS   P  VTF  LI        ++ A A+  K+  + C  DV T+ +LI+G C
Sbjct: 291 LFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYC 350

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           RTG   + L +++ M   N        P+  TYS II+ LCK+                 
Sbjct: 351 RTGDIRLGLKVWDVMKARN------VSPNIYTYSVIINALCKD----------------- 387

Query: 267 LNKMAFYFPLVRVQCLCLN-------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            N++     L+R Q  C +       +  +IDG CK   +  A  +   +      P+ V
Sbjct: 388 -NRIHEARDLLR-QLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKV 445

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           T+ ILI G C  G+M E         +FK++ + G  PD  T + L+ C  K G+ S  F
Sbjct: 446 TFTILIIGHCMKGRMVEA------LDIFKKMLAIGCAPDNITISSLVACLLKAGKPSEAF 499

Query: 380 VI 381
            I
Sbjct: 500 HI 501



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 142/331 (42%), Gaps = 69/331 (20%)

Query: 127 TYNILINCFCKMG-----------RVSHGFVVLGRILRSCFTP----------------- 158
           TY +LI   C+MG             S G ++  R+L    T                  
Sbjct: 95  TYELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEV 154

Query: 159 -------DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                   +  +  L+ +L    ++ EA  LF +   F    + +T+N LI GLCR G  
Sbjct: 155 QGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEV 214

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC--MASFSALNK 269
                LF  M +    FG  C PD +TY+T+I GLCK    AN L  +C  +    + N 
Sbjct: 215 EKGFELFNAMQS----FG--CLPDVVTYNTLISGLCK----ANELDRACDLLKEVQSRND 264

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
            +   P V      + +  +I G  K+ KL+ A  LF+ + R+G+ P VVT+N+LI G  
Sbjct: 265 CS---PDV------MTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFG 315

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
             G M   +       + +++ S    PD+ T+  LI+ +C+ G +  G  ++  +    
Sbjct: 316 KIGNMVAAE------AMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARN 369

Query: 390 FTPDAVTFTSLI-------KILEINSFFRQV 413
            +P+  T++ +I       +I E     RQ+
Sbjct: 370 VSPNIYTYSVIINALCKDNRIHEARDLLRQL 400



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 1/147 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
            L V+D M   R   P + +++++   L K         L ++L  + +FP  + YN +I
Sbjct: 358 GLKVWDVM-KARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVI 416

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + FCK G V    V++  +      PD VTFT LI   C + R++EA  +F K+   GC 
Sbjct: 417 DGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGCA 476

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFE 219
            D  T ++L+  L + G    A ++ +
Sbjct: 477 PDNITISSLVACLLKAGKPSEAFHIVQ 503


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 173/412 (41%), Gaps = 99/412 (24%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD++   +  +  V ++N     LAK          F+++   G  PD +TY+I++   
Sbjct: 24  LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGL 83

Query: 136 CKMGRVSHGFVVLGRILRSCF------------------------------------TPD 159
           CK G +     +LG++  S                                       PD
Sbjct: 84  CKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPD 143

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            VTF SL+K LC+  R+ EA  LF  +   GCE +V +Y+TL++GLC+ G    A  L+E
Sbjct: 144 VVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWE 203

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC------MASFSALNKMAFY 273
           EM   +      C PD + Y++ + GLCK    AN +  +C      +   S  + +AF 
Sbjct: 204 EMVEKS------CVPDLVAYTSFVTGLCK----ANRVAEACDCCRKMVTKGSKADAVAFS 253

Query: 274 FPL---------VRVQCLCLNFLC---LIDGLCKISKLKIAR------ELFQSLPRA--- 312
             +            Q   +  LC   ++D  CK  +  I+R      ELF +L  A   
Sbjct: 254 TVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCK 313

Query: 313 ------GLM--------------PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
                 G++              PN+ TYNI++  LC   Q+DE +       L   + +
Sbjct: 314 SKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQE------LVNEMAN 367

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            GL PD+ TY+ L++  CK+G++     +   +      PD+ T  S++  L
Sbjct: 368 YGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNAL 419



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 158/375 (42%), Gaps = 51/375 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F  M +     P V +FN L   L   +       LF+ +   G  P+  +Y+ 
Sbjct: 125 DDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYST 184

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK GR+     +   ++     PD V +TS +  LC  +R+ EA     K+   G
Sbjct: 185 LLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKG 244

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE-----------PDAITY 239
            + D   ++T+I  LC+ GH   A N   E    +G     C+           P A  +
Sbjct: 245 SKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELF 304

Query: 240 STIIDGLCKEAGSAN-FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           +T+I  +CK     +  L F  M S        FY P          +  ++D LCK  +
Sbjct: 305 NTLIHAVCKSKRLPDGVLLFQRMKSMK-----EFYCPPNLE-----TYNIMVDNLCKAKQ 354

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD------ETKHYETVF-------- 344
           L  A+EL   +   GL P+VVTY+ L+ GLC  G++D      E    E VF        
Sbjct: 355 LDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDAS 414

Query: 345 ---------------LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                             + + + G  PDL TYN L++  CK GR+        +++ + 
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 390 FTPDAVTFTSLIKIL 404
            TPD  ++T +I  L
Sbjct: 475 CTPDVFSYTIIITAL 489



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 158/340 (46%), Gaps = 37/340 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF---PDRYT 127
           +EA   F+ M++ R   P    FN L   + K+K     + LF+R+     F   P+  T
Sbjct: 283 DEACKTFEEMIS-RNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLET 341

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           YNI+++  CK  ++     ++  +     +PD VT+++L+  LC   ++  A  L  ++ 
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMS 401

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGL 246
             G   D FT  +++N L + G    AL+  E M A G+        PD +TY+T++DGL
Sbjct: 402 KEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGS-------TPDLVTYNTLLDGL 454

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARE 304
           CK AG  +               + F   +V  +C     ++  +I  LC+  +   A  
Sbjct: 455 CK-AGRID-------------EAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHA 500

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +FQ + + G++P+ V Y+ L+ GL  +G  D         L  + L ++   PD   + +
Sbjct: 501 IFQEMVKRGVLPDTVLYHSLLDGLARNGLED---------LALELLKTSLCKPDFVMHKM 551

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +++  CK G+      +  R+  + F  DA T+ S++  L
Sbjct: 552 VLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGL 591



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 128/273 (46%), Gaps = 30/273 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + + M N   S P V +++ L   L K    D    L + ++  G+FPD +T   
Sbjct: 356 DEAQELVNEMANYGLS-PDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDAS 414

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++N   K G+V +    L  +     TPD VT+ +L+  LC   RI EA     K+    
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
           C  DVF+Y  +I  LCR+G    A  +F+EM     + GV+  PD + Y +++DGL +  
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMV----KRGVL--PDTVLYHSLLDGLARNG 528

Query: 249 -EAGSANFLGFS-CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            E  +   L  S C   F  ++KM                  ++DGLCK  K + A E+ 
Sbjct: 529 LEDLALELLKTSLCKPDF-VMHKM------------------VLDGLCKAGKAEDACEVV 569

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
           + +  AG   +  TY  ++ GL   G++D+ + 
Sbjct: 570 ERMADAGFPADAFTYISVVSGLRKLGKVDKARQ 602



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 32/175 (18%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R S P + ++N L   L K    D  ++   ++      PD ++Y I+I   C+ G+
Sbjct: 435 MKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQ 494

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDL------------------------------ 170
            +    +   +++    PD V + SL+  L                              
Sbjct: 495 AAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVLD 554

Query: 171 --CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
             C   +  +A  +  ++   G   D FTY ++++GL + G    A  L ++ + 
Sbjct: 555 GLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASE 609



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 11/109 (10%)

Query: 296 ISKLKIARELFQSLPRA-GLMPNVVTYNILIRGLC--NDGQMDETKHYETVFLLFKRLNS 352
           + K+     LF  L R  G   +V TYN  +  L   N GQ+     YE     F+++  
Sbjct: 15  LGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQL----AYEK----FQQMQR 66

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G  PD +TY+I++   CK G +     + G++  S    + +T++ +I
Sbjct: 67  RGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVI 115


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 155/330 (46%), Gaps = 28/330 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL + D ML  R  +P V ++ +L   + K+  +   +++   +   G  P+  TYN++
Sbjct: 159 DALALLDDMLQ-RGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVI 217

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN  C+ GRV     +L R+    F PD V++T+++K LCA  R  +   LF ++    C
Sbjct: 218 INGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKC 277

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T++ L+   CR G    A+ + ++M+         C P+    + +I+ +CK+  
Sbjct: 278 VPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHG------CTPNTTLCNIVINAICKQGR 331

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +   F        LN M  Y          +++  ++ GLC+  + + A+EL   + R
Sbjct: 332 VDDAYDF--------LNNMGMY----GCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVR 379

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
               PN VT+N  I  LC  G +      E    L + +   G    + TYN L++ FC 
Sbjct: 380 KNCPPNEVTFNTFICILCQKGLI------EQAIKLIELMPEYGCSVGIVTYNALVHGFCV 433

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            GRV S   +F   LP    P+ +T+T+L+
Sbjct: 434 QGRVDSALELFNN-LPC--EPNTITYTTLL 460



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 135/296 (45%), Gaps = 34/296 (11%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD YTY  +I   C  GRV     +L  +L+    P  VT+T L++ +C  S   EA  +
Sbjct: 139 PDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNV 198

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             ++R  GC  ++ TYN +ING+CR G    A    +E+ N    +G   +PD ++Y+T+
Sbjct: 199 LDEMRAKGCTPNIVTYNVIINGMCREGRVDDA----KEILNRLSSYGF--QPDIVSYTTV 252

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLK 300
           + GLC              A+    +    +  +V  +C+   + F  L+   C+   ++
Sbjct: 253 LKGLC--------------AARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVE 298

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF---P 357
            A ++ Q + + G  PN    NI+I  +C  G++D+   +         LN+ G++   P
Sbjct: 299 RAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDF---------LNNMGMYGCNP 349

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           D  +Y  ++   C+ GR      +   ++     P+ VTF + I IL       Q 
Sbjct: 350 DTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQA 405



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 111/247 (44%), Gaps = 29/247 (11%)

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
            PD    T LI++LC   R  +AA +       G  +DVF YNTL+ G CR G    A  
Sbjct: 71  APDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARR 130

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           L   M            PDA TY+ II GLC      + L          L+ M     L
Sbjct: 131 LIASMP---------VPPDAYTYTPIIRGLCDRGRVGDALAL--------LDDM-----L 168

Query: 277 VR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
            R  Q   + +  L++ +CK S    A  +   +   G  PN+VTYN++I G+C +G++D
Sbjct: 169 QRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 228

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           + K       +  RL+S G  PD+ +Y  ++   C   R     V+F  ++     P+ V
Sbjct: 229 DAKE------ILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEV 282

Query: 396 TFTSLIK 402
           TF  L++
Sbjct: 283 TFDMLVR 289



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 142/338 (42%), Gaps = 32/338 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + S+  +   L   + +D V  LF  +      P+  T+++L+  FC+ G V     
Sbjct: 243 QPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQ 302

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL ++ +   TP+      +I  +C + R+ +A      + ++GC  D  +Y T++ GLC
Sbjct: 303 VLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLC 362

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-SCMASFS 265
           R G    A  L  EM   N      C P+ +T++T I  LC++      +     M  + 
Sbjct: 363 RAGRWEHAKELLPEMVRKN------CPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYG 416

Query: 266 ALNKMAFYFPLVRVQCL-------------------CLNFLCLIDGLCKISKLKIARELF 306
               +  Y  LV   C+                    + +  L+ GLC   +L  A EL 
Sbjct: 417 CSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLLTGLCHAERLDAAAELL 476

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             + +     N VT+N+L+   C  G ++E         L  ++   G  P+L T+N L+
Sbjct: 477 AGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAME------LVNQMMEHGCTPNLITFNTLL 530

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +   K         +   ++    + D +T++S++ +L
Sbjct: 531 DGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVL 568



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 138/318 (43%), Gaps = 58/318 (18%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVL-------------------------GR---- 150
           G  PD Y    LI   C+ GR S    VL                         GR    
Sbjct: 69  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAA 128

Query: 151 ---ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              I      PDA T+T +I+ LC   R+ +A AL   +   GC+  V TY  L+  +C+
Sbjct: 129 RRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCK 188

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +     A+N+ +EM A G       C P+ +TY+ II+G+C+E    +        +   
Sbjct: 189 SSGFGEAMNVLDEMRAKG-------CTPNIVTYNVIINGMCREGRVDD--------AKEI 233

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           LN+++ Y      Q   +++  ++ GLC   +    + LF  +     +PN VT+++L+R
Sbjct: 234 LNRLSSY----GFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVR 289

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             C  G +      E    + ++++  G  P+    NI+IN  CK GRV   +     + 
Sbjct: 290 FFCRGGMV------ERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMG 343

Query: 387 PSCFTPDAVTFTSLIKIL 404
                PD +++T++++ L
Sbjct: 344 MYGCNPDTISYTTVLRGL 361



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 142/349 (40%), Gaps = 38/349 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T  NI+   + K    D        + + G  PD  +Y  ++   C+ GR  H   +
Sbjct: 314 PNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKEL 373

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++R    P+ VTF + I  LC +  I +A  L   +  +GC + + TYN L++G C 
Sbjct: 374 LPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCV 433

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSA---------- 253
            G    AL LF  +          CEP+ ITY+T++ GLC     +A +           
Sbjct: 434 QGRVDSALELFNNLP---------CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDC 484

Query: 254 --NFLGFSCMASFS-----ALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARE 304
             N + F+ + SF          M     ++   C    + F  L+DG+ K    + A E
Sbjct: 485 PLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALE 544

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L   L   G+  + +TY+ ++  L  + + +E         +   +   G+ P +  YN 
Sbjct: 545 LLHGLVSKGVSLDTITYSSVVDVLSREDRTEEA------IQMLHAVQDMGMRPKVGMYNK 598

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           ++   CK          F  ++ +   P+  T+  LI+ L      ++ 
Sbjct: 599 ILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 647



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 53/260 (20%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           + N  P  P   ++  L   L   +  D    L   +       +  T+N+L++ FC+ G
Sbjct: 443 LFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKG 502

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V     ++ +++    TP+ +TF +L+  +  +    EA  L   L   G  LD  TY+
Sbjct: 503 FVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYS 562

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           ++++ L R   T  A+    +M +   + G+   P    Y+ I+  LCK   +   + F 
Sbjct: 563 SVVDVLSREDRTEEAI----QMLHAVQDMGM--RPKVGMYNKILFALCKRCETDQAIDF- 615

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
                                                         F  +   G MPN  
Sbjct: 616 ----------------------------------------------FAYMVSNGCMPNES 629

Query: 320 TYNILIRGLCNDGQMDETKH 339
           TY ILI GL ++G + E ++
Sbjct: 630 TYIILIEGLAHEGLLKEARY 649



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 286 FLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           +LC  LI  LC+  +   A  + ++   +G   +V  YN L+ G C  G++D  +     
Sbjct: 75  YLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAAR----- 129

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
               + + S  + PD YTY  +I   C  GRV     +   +L     P  VT+T L++ 
Sbjct: 130 ----RLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEA 185

Query: 404 LEINSFFRQV 413
           +  +S F + 
Sbjct: 186 VCKSSGFGEA 195


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 147/333 (44%), Gaps = 42/333 (12%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPD--RYTYNILINCFCKMGRVSHGFVVLGRI 151
           N L   L K + +     +F R  L G   D    TYN LI  FCK G +   F +L  +
Sbjct: 73  NCLLRTLVKARRHHQAYQIF-RDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEM 131

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                +PD VT +S+++ LC    +  A   F +     C  D   +N L++GLC+    
Sbjct: 132 KERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRE--SVECAPDSVLFNILVHGLCKANQL 189

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFSALNK 269
             A  + EEM+    E G+V  PD +TY+++IDGLCK      A  L    M        
Sbjct: 190 SEARQMIEEMS----ERGIV--PDVVTYNSLIDGLCKSYRMEEARQL-LETMVKRKVRPN 242

Query: 270 MAFYFPLVRVQCL----------------------CLNFLCLIDGLCKISKLKIARELFQ 307
           +  Y  L+   C                        + F  LI G C+ SK+  A E+  
Sbjct: 243 LVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLH 302

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            + +    PN+VTYN+LI GLC+ G+ +E         L   ++  G+ PD+ TYN LI 
Sbjct: 303 LMKKGLCAPNLVTYNVLISGLCDAGRANEACE------LLSEMDGRGILPDIITYNSLIG 356

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
            FC+  ++   F I   ++     PD +++ +L
Sbjct: 357 IFCRNFQIEQAFQIQNLMVERGVIPDGISYCTL 389



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 141/317 (44%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L   L K+   +    L + +    + P+  TYN LI  +CK G       +
Sbjct: 206 PDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQL 265

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + R+++S   PD VTF SLI   C +S+I +A  +   ++   C  ++ TYN LI+GLC 
Sbjct: 266 IERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCD 325

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  L  EM +G G       PD ITY+++I   C+         F    +F   
Sbjct: 326 AGRANEACELLSEM-DGRGIL-----PDIITYNSLIGIFCR--------NFQIEQAFQIQ 371

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N M     +       +++  L   L K  +   A  L  ++  AG +PN+ T+N L+ G
Sbjct: 372 NLMVERGVIPD----GISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEG 427

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC   ++DE +H      L   +   G  P   TY +L+   CK GRV     +   ++ 
Sbjct: 428 LCCSRRLDEARH------LLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVS 481

Query: 388 SCFTPDAVTFTSLIKIL 404
               P   +  +++  L
Sbjct: 482 EGIQPLVSSSGTIVHTL 498



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 147/329 (44%), Gaps = 29/329 (8%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G   S    EA  + + M+  R  RP + ++N L     KT        L +R+  +G 
Sbjct: 216 DGLCKSYRMEEARQLLETMVK-RKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGT 274

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  T+N LI+ FC+  ++     VL  + +    P+ VT+  LI  LC   R  EA  
Sbjct: 275 HPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACE 334

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L +++   G   D+ TYN+LI   CR      A  +   M     E GV+  PD I+Y T
Sbjct: 335 LLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMV----ERGVI--PDGISYCT 388

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           +   L K   S  F       +F+ L+ M  A   P +        F  L++GLC   +L
Sbjct: 389 LAVALLK---SERF-----DEAFALLDNMFDAGAIPNL------FTFNSLMEGLCCSRRL 434

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             AR L   + R G  P   TY +L+ GLC  G++D+ K  E + ++     S G+ P +
Sbjct: 435 DEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAK--EVLVMMV----SEGIQPLV 488

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPS 388
            +   +++   + G+       F +++ +
Sbjct: 489 SSSGTIVHTLAREGKQDLALHYFDQVVAA 517


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 149/340 (43%), Gaps = 62/340 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL + + M + +  +  + + NI+   L +    +  L   K +   GL PD  TYN 
Sbjct: 368 SDALNLLEEMRD-KGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNT 426

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ +CK   V+  FV++  ++RS    D  T  +L+ +LC E R  EA  L       G
Sbjct: 427 LIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRG 486

Query: 191 CELD-----------------------------------VFTYNTLINGLCRTGHTIVAL 215
              D                                   ++TYNTLI GLC  G    A+
Sbjct: 487 FVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAI 546

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM-AFYF 274
           +   E+       G+V  PD  TY+ II   CKE             +F   NKM   YF
Sbjct: 547 DKLNELMKK----GLV--PDDTTYNIIIHAYCKEG--------DLEKAFQFHNKMLENYF 592

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
               V C       L++GLC   KL+ A +LF+S    G   +V+TYN LI+ LC DG +
Sbjct: 593 KPDVVTC-----NTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDV 647

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
           D   H+      F  + + GL PD +TYN++++   + GR
Sbjct: 648 DTALHF------FADMEARGLQPDAFTYNVVLSALSEAGR 681



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 140/335 (41%), Gaps = 59/335 (17%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           S +P  +L VF  ++ +R   P   +FN+L             LS    +   GL PD  
Sbjct: 188 STSPQASLDVFRSLIALR-LHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVV 246

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           TYN L+   C+ G +     +L R+ +    P   T+ +L+        I +A  +   +
Sbjct: 247 TYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAM 306

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
             FG E D++TYN L  GLC+ G    A  L +EM     E   +  PD +TY+T++D  
Sbjct: 307 TAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEM-----EHLSIVSPDVVTYNTLVDA- 360

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
           C          F    S  ALN                                    L 
Sbjct: 361 C----------FKYQRSSDALN------------------------------------LL 374

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           + +   G+  ++VT+NI+++GLC +GQ++E           K +   GL PD+ TYN LI
Sbjct: 375 EEMRDKGVKSSLVTHNIVVKGLCREGQLEE------ALGRLKMMTEEGLAPDVITYNTLI 428

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + +CK   V+  FV+   ++ S    D  T  +L+
Sbjct: 429 DAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLL 463



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 122/284 (42%), Gaps = 33/284 (11%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P  AL ++D M + R   P + ++N L   L         +     L   GL PD  TYN
Sbjct: 507 PEPALYLWDEM-SKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYN 565

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           I+I+ +CK G +   F    ++L + F PD VT  +L+  LC   ++ +A  LF      
Sbjct: 566 IIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEK 625

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCK 248
           G ++DV TYNTLI  LC+ G    AL+ F +M A G        +PDA TY+ ++  L +
Sbjct: 626 GKKVDVITYNTLIQALCKDGDVDTALHFFADMEARG-------LQPDAFTYNVVLSALSE 678

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVR-------------VQCLC-----------L 284
              S            S      F +PL++             V+  C            
Sbjct: 679 AGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGGDQE 738

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
           ++   +  LC   +LK A+ +   + + G+  +  TY  L+ GL
Sbjct: 739 SYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGL 782



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 133/330 (40%), Gaps = 26/330 (7%)

Query: 78  DYMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           + +L   P R   P   S+  +     K    +  L L+  ++   L P  YTYN LI  
Sbjct: 476 EELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKG 535

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            C +G+++     L  +++    PD  T+  +I   C E  + +A     K+     + D
Sbjct: 536 LCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPD 595

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           V T NTL+NGLC  G    A+ LFE  A    +       D ITY+T+I  LCK+     
Sbjct: 596 VVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKV------DVITYNTLIQALCKDGDVDT 649

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
            L F        L   AF + +V            +  L +  + + A+ +   L  +G 
Sbjct: 650 ALHFFADMEARGLQPDAFTYNVV------------LSALSEAGRSEEAQNMLHKLDESGK 697

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
           +    +Y  LI+      ++   K  E         N+ G   D  +YN  +   C  G+
Sbjct: 698 LSERFSYP-LIKSSAE--EVKTGKDPEVKSDCESGGNAKG--GDQESYNKSVKELCVGGQ 752

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +     +   ++    + D+ T+ +L++ L
Sbjct: 753 LKEAKAVLDEMMQKGMSVDSSTYITLMEGL 782



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 301 IARELFQSLPRAG-LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
           +A +L  S  R G + P++   N ++  L            +    +F+ L +  L P+ 
Sbjct: 155 LAAQLLHSFRRRGHVRPSLQAANAVLSALARSPSTSP----QASLDVFRSLIALRLHPNH 210

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           YT+N+L++  C  G ++        +     +PD VT+ +L+K
Sbjct: 211 YTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLK 253


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 147/329 (44%), Gaps = 28/329 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   + NI+     K    D   +   ++  +G  PD  TYN LIN +CK G +   F 
Sbjct: 380 KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFR 439

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            +  + R     D+VT  ++++ LC E ++ EA  L +  R  G  +D  +Y TLI G  
Sbjct: 440 TMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYF 499

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G+   AL L++EM     E  ++  P  +TY+ II GLC+           C  +  A
Sbjct: 500 KDGNVDRALKLWDEMK----EKEII--PSTVTYNCIIGGLCQ-----------CGKTEQA 542

Query: 267 LNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           ++K+     L+    L     +  ++ G C+   ++ A +    +      P+V T NIL
Sbjct: 543 ISKLN---ELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNIL 599

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           +RGLC +G +      E    LF    S G   D  TYN LI   CK GR+   F +   
Sbjct: 600 LRGLCMEGVL------EKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSE 653

Query: 385 ILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           +      PD  T+ ++I  L  +   R+ 
Sbjct: 654 MEEKELGPDHYTYNAIITALTDSGRIREA 682



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N+L   L      +    L   +    L PD  +YN LIN   +  ++S  F +
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P+AVT   ++K  C E ++ +A+   TK+   G   D  TYNTLING C+
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCK 430

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+   A    +EM   N +       D++T +TI+  LC+E               S+ 
Sbjct: 431 AGNMGEAFRTMDEMGRKNMKM------DSVTLNTILRTLCREKKLEEAYKL-----LSSA 479

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K  ++   V       ++  LI G  K   +  A +L+  +    ++P+ VTYN +I G
Sbjct: 480 RKRGYFIDEV-------SYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGG 532

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G+       E        L  +GL PD  TYN +++ +C+ G V   F    +++ 
Sbjct: 533 LCQCGKT------EQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVE 586

Query: 388 SCFTPDAVTFTSLIKIL 404
           + F PD  T   L++ L
Sbjct: 587 NSFKPDVFTCNILLRGL 603



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 167/371 (45%), Gaps = 36/371 (9%)

Query: 37  ATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNIL 96
           + LRLT   +A L+  +    +S          P+ A  +F  M  +R  RP + + N L
Sbjct: 126 SILRLTSPSKALLDTAIGAYVQSG--------QPHHAFQIFKKMKRLRL-RPNLLTCNTL 176

Query: 97  FGCLAKTKHYDTV---LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
              L +     +V      F      G+ P+  T+NI+I  +C   +       L  + +
Sbjct: 177 LNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGK 236

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
              +PD VT+ +++  LC + R+ +A  L   ++  G   +  TYN L+ G C+ G    
Sbjct: 237 YNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKE 296

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
           A N+ E M   N        PD  TY+ +I+GLC E             +F   ++M   
Sbjct: 297 AANVIELMTQNN------LLPDVWTYNMLINGLCNEG--------RIEEAFKLRDEMENL 342

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
             L  V    +++  LI+G  + SK+  A +L + +   G+ PN VT+NI+++  C +G+
Sbjct: 343 KLLPDV----VSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGK 398

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           MD+  +  T      ++  +G  PD  TYN LIN +CK G +   F     +       D
Sbjct: 399 MDDASNTIT------KMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMD 452

Query: 394 AVTFTSLIKIL 404
           +VT  ++++ L
Sbjct: 453 SVTLNTILRTL 463



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 149/341 (43%), Gaps = 43/341 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N +   L K         L   +   GL P+R TYNIL+  +CKMG +     V
Sbjct: 241 PDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANV 300

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  + ++   PD  T+  LI  LC E RI EA  L  ++       DV +YNTLING   
Sbjct: 301 IELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLE 360

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---GSANFL------GF 258
                 A  L EEM+    E GV  +P+A+T++ ++   CKE     ++N +      GF
Sbjct: 361 WSKISEAFKLLEEMS----EKGV--KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGF 414

Query: 259 S-------------CMA-----SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           S             C A     +F  +++M      +++  + LN   ++  LC+  KL+
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMG--RKNMKMDSVTLN--TILRTLCREKKLE 470

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A +L  S  + G   + V+Y  LI G   DG +D          L+  +    + P   
Sbjct: 471 EAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDR------ALKLWDEMKEKEIIPSTV 524

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           TYN +I   C+ G+          +L S   PD  T+ +++
Sbjct: 525 TYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTIL 565



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 72/189 (38%), Gaps = 29/189 (15%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V + NIL   L      +  L LF      G   D  TYN LI   CK GR+   F 
Sbjct: 590 KPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFN 649

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG------CELD------ 194
           +L  +      PD  T+ ++I  L    RI EA    +K+   G       +LD      
Sbjct: 650 LLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVV 709

Query: 195 -----------VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
                         Y+  I  LC  G    A+ +F E    + + G+    D  TY  ++
Sbjct: 710 TSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGE----SKQKGITV--DKSTYINLM 763

Query: 244 DGLCKEAGS 252
           DGL K   S
Sbjct: 764 DGLIKRRKS 772



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 24/164 (14%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL +F+  ++   +   VT +N L   L K    D   +L   +    L PD YTYN +
Sbjct: 611 KALKLFNTWVSKGKAIDTVT-YNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAI 669

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAV-----------------------TFTSLIK 168
           I      GR+      + ++L     PD V                        ++  IK
Sbjct: 670 ITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIK 729

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           +LC E +  +A  +F + +  G  +D  TY  L++GL +   +I
Sbjct: 730 ELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIKRRKSI 773


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 151/333 (45%), Gaps = 26/333 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA+ +   M N   S P   + N +     ++   D   ++F  +++ G+ PD  ++ +
Sbjct: 187 NEAVGMVMDMQNQGLS-PSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKL 245

Query: 131 L-INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           + I CF + G++      L  +++  F PD  T T ++  LC    +  A   F K+   
Sbjct: 246 MVIGCF-RDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDL 304

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G + ++  + +LI+GLC+ G    A  + EEM   NG      +P+  T++ +IDGLCK 
Sbjct: 305 GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVR-NG-----WKPNVYTHTALIDGLCKR 358

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
             +           F  L +   Y P V        +  +I G CK  KL  A  LF  +
Sbjct: 359 GWTEKAFRL-----FLKLVRSDIYKPNVHT------YTSMIGGYCKEDKLNRAEMLFSRM 407

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              GL PNV TY  LI G C  G  D  + YE    L   ++  G  P++YTYN +I+  
Sbjct: 408 KEQGLFPNVNTYTTLINGHCKAGNFD--RAYE----LMNLMDDEGFRPNIYTYNAVIDSL 461

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           CK  R    + +  +        D VT+T LI+
Sbjct: 462 CKKSRAPEAYELLNKAFSCGLEADGVTYTILIQ 494



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 153/358 (42%), Gaps = 45/358 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A+  F  M+++   +P + +F  L   L K         + + +   G  P+ YT+  
Sbjct: 292 NRAIWYFRKMIDL-GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTA 350

Query: 131 LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           LI+  CK G     F +  +++RS  + P+  T+TS+I   C E ++  A  LF++++  
Sbjct: 351 LIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQ 410

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +V TY TLING C+ G+   A  L   M +          P+  TY+ +ID LCK+
Sbjct: 411 GLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEG------FRPNIYTYNAVIDSLCKK 464

Query: 250 AGSANFL-----GFSCMASFSALNKMAFYFPLVRVQC------LCLNFLC---------- 288
           + +          FSC      +     Y  L++ QC        L F C          
Sbjct: 465 SRAPEAYELLNKAFSCGLEADGVT----YTILIQEQCKQSDIKQALAFFCRMNKTGFEAD 520

Query: 289 ------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
                 LI   C+  K+K +  LFQ +   GL+P   TY  +I G C +G  D    Y  
Sbjct: 521 MRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKY-- 578

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
               F  +   G  PD +TY  LI+  CK   V     ++  ++    +P  VT  +L
Sbjct: 579 ----FHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTL 632



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 155/362 (42%), Gaps = 61/362 (16%)

Query: 76  VFDYMLNMRPSRPPVTSFNIL-FGCL--AKTKHYDTVLS-LFKRLNLTGLFPDRYTYNIL 131
           VFD M ++R   P  +SF ++  GC    K +  D  LS + +R    G  PD  T  ++
Sbjct: 227 VFDEM-SVRGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQR----GFIPDNATCTLI 281

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  C+ G V+       +++   F P+ + FTSLI  LC +  I +A  +  ++   G 
Sbjct: 282 LSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGW 341

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + +V+T+  LI+GLC+ G T  A  LF ++   +     + +P+  TY+++I G CKE  
Sbjct: 342 KPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD-----IYKPNVHTYTSMIGGYCKE-- 394

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
                          LN+    F  ++ Q L  N   +  LI+G CK      A EL   
Sbjct: 395 -------------DKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNL 441

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDET-----------------------------KH 339
           +   G  PN+ TYN +I  LC   +  E                                
Sbjct: 442 MDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSD 501

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
            +     F R+N TG   D+   NILI  FC+  ++     +F  ++     P   T+TS
Sbjct: 502 IKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTS 561

Query: 400 LI 401
           +I
Sbjct: 562 MI 563



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 120/297 (40%), Gaps = 26/297 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++  + G   K    +    LF R+   GLFP+  TY  LIN  CK G     + 
Sbjct: 378 KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYE 437

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  +    F P+  T+ ++I  LC +SR  EA  L  K    G E D  TY  LI   C
Sbjct: 438 LMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQC 497

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      AL  F  M N  G      E D    + +I   C++           M     
Sbjct: 498 KQSDIKQALAFFCRM-NKTG-----FEADMRLNNILIAAFCRQKK---------MKESER 542

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L ++     LV  +     +  +I G CK     +A + F ++ R G +P+  TY  LI 
Sbjct: 543 LFQLVVSLGLVPTK---ETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLIS 599

Query: 327 GLCNDGQMDET-KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           GLC    +DE  K YE +          GL P   T   L   +CK    +S  ++ 
Sbjct: 600 GLCKKSMVDEACKLYEAMI-------DRGLSPPEVTRVTLAYEYCKRNDSASAMIVL 649



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 29/288 (10%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           GL P   T N ++    + G + +   V   +      PD+ +F  ++     + +I EA
Sbjct: 200 GLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQEA 259

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
               + +   G   D  T   +++ LC  G    A+  F +M +      +  +P+ I +
Sbjct: 260 DRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMID------LGFKPNLINF 313

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAF--YFPLVRVQCLCLNFLCLIDGLCKIS 297
           +++IDGLCK+         S   +F  L +M    + P V           LIDGLCK  
Sbjct: 314 TSLIDGLCKKG--------SIKQAFEMLEEMVRNGWKPNVYTHT------ALIDGLCKRG 359

Query: 298 KLKIARELFQSLPRAGL-MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
             + A  LF  L R+ +  PNV TY  +I G C + +++  +      +LF R+   GLF
Sbjct: 360 WTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAE------MLFSRMKEQGLF 413

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           P++ TY  LIN  CK G     + +   +    F P+  T+ ++I  L
Sbjct: 414 PNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSL 461



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 120/260 (46%), Gaps = 36/260 (13%)

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
           ++++     R+ EA  +   ++  G      T N ++     +G    A N+F+EM+   
Sbjct: 176 MLRNFSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMS--- 232

Query: 226 GEFGVVCEPDAITYSTII-----DGLCKEAG-------SANFL--GFSCMASFSAL---- 267
                VC PD+ ++  ++     DG  +EA           F+    +C    SAL    
Sbjct: 233 --VRGVC-PDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENG 289

Query: 268 --NKMAFYFPLV---RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
             N+  +YF  +     +   +NF  LIDGLCK   +K A E+ + + R G  PNV T+ 
Sbjct: 290 LVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHT 349

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF-PDLYTYNILINCFCKIGRVSSGFVI 381
            LI GLC  G        E  F LF +L  + ++ P+++TY  +I  +CK  +++   ++
Sbjct: 350 ALIDGLCKRGWT------EKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEML 403

Query: 382 FGRILPSCFTPDAVTFTSLI 401
           F R+      P+  T+T+LI
Sbjct: 404 FSRMKEQGLFPNVNTYTTLI 423



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 9/168 (5%)

Query: 52  FLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
            ++E+CK S   DI      +AL  F  M N       +   NIL     + K       
Sbjct: 492 LIQEQCKQS---DI-----KQALAFFCRM-NKTGFEADMRLNNILIAAFCRQKKMKESER 542

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           LF+ +   GL P + TY  +I+ +CK G           + R    PD+ T+ SLI  LC
Sbjct: 543 LFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLC 602

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            +S + EA  L+  +   G      T  TL    C+   +  A+ + E
Sbjct: 603 KKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSASAMIVLE 650


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 159/344 (46%), Gaps = 39/344 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +FN+L G L  + H +    LF ++   G  P+ +T+ IL+  +C+ G  S G  +
Sbjct: 145 PEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLEL 204

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG++      P+ V + +LI   C E +  +A  L  K+R  G    V T+N+ I+ LC 
Sbjct: 205 LGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCG 264

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA-------------GSAN 254
           +G  + A  +F +M   + E G+   P+ ITY  ++ G CKE               +AN
Sbjct: 265 SGKILEASRIFRDMQI-DEELGLP-HPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNAN 322

Query: 255 FLGFSC--------------MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           F+                  + ++  L +M      + ++    ++  ++DGLCK   L 
Sbjct: 323 FINLESYNIWLLGLIRNGKLLEAWIVLKEMLG----IGIEPDIYSYNIVMDGLCKNGMLS 378

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            AR L   + R G++P+ VTY+ L+ G C+ G++ E  +      L   + S    P+ Y
Sbjct: 379 DARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANN------LLHEMISNNCSPNTY 432

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           T N+L++   K GR+S    +  ++    +  D VT   +I  L
Sbjct: 433 TCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINAL 476



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 151/350 (43%), Gaps = 40/350 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  V   ML +    P + S+NI+   L K         L   +   G+ PD  TY+ L
Sbjct: 344 EAWIVLKEMLGI-GIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTL 402

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ +C  G+V     +L  ++ +  +P+  T   L+  L  E RI EA  L  K+   G 
Sbjct: 403 LHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGY 462

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMAN---------GNGEFGVV--------CEP 234
            +D  T N +IN LC  G    A+ +   M           GN   G+V        C P
Sbjct: 463 GVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTP 522

Query: 235 DAITYSTIIDGLCKEAGSANFL--GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
           D +TYSTII GLCK AG  +     F  M S       A Y                I  
Sbjct: 523 DLVTYSTIISGLCK-AGRLDDAKKKFIEMMSKGLQPDSAIYD-------------TFIHS 568

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
            C+  K+  A ++ + + + G    + TYN LI GL +  Q+ E      ++ L   +  
Sbjct: 569 FCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFE------LYGLIDEMRE 622

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            G+ PD+ TYN ++NC C+ GR++    +   +L    +P+  +F  LIK
Sbjct: 623 KGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIK 672



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 163/352 (46%), Gaps = 30/352 (8%)

Query: 71  NEALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           N+A+  F  + +  P + P +  +N+L     +    + V  L+K + L  + P+ YT+N
Sbjct: 92  NKAISHFKSLRSNFPEKQPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSPEAYTFN 151

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +LI   C  G +     +  ++      P+  TF  L++  C      +   L  ++R  
Sbjct: 152 LLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTM 211

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +   YNTLI+  C+ G T  A  L ++M     E G+V  P   T+++ I  LC  
Sbjct: 212 GILPNNVLYNTLISSFCKEGKTHDAEKLVDKMR----EDGLV--PHVETFNSRISALC-- 263

Query: 250 AGSANFLGFS-CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
            GS   L  S          ++    P V      + +  ++ G CK   L+ A+ L  +
Sbjct: 264 -GSGKILEASRIFRDMQIDEELGLPHPNV------ITYKLMLMGFCKEGMLEEAKTLVDT 316

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + R     N+ +YNI + GL  +G++ E       +++ K +   G+ PD+Y+YNI+++ 
Sbjct: 317 MKRNANFINLESYNIWLLGLIRNGKLLE------AWIVLKEMLGIGIEPDIYSYNIVMDG 370

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
            CK G +S   ++ G ++ +   PD VT+++L+       K+ E N+   ++
Sbjct: 371 LCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEM 422



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 135/305 (44%), Gaps = 29/305 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N  + + D  ++ +   P + +++ +   L K    D     F  +   GL PD   Y+ 
Sbjct: 505 NSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDT 564

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I+ FC+ G++S  F VL  + +        T+ SLI  L ++++I E   L  ++R  G
Sbjct: 565 FIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKG 624

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV TYN ++N LC  G    A ++ +EM     + G+   P+  ++  +I   CK  
Sbjct: 625 VSPDVCTYNHMLNCLCEGGRINDAPSVLDEML----QKGI--SPNISSFRILIKAFCKAC 678

Query: 251 G-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ-S 308
              A+   F    +    +K A Y        L  N L L+ G     K+  A+ELF+ +
Sbjct: 679 DFKASHEVFEIALNVCG-HKEALY-------TLMFNEL-LVGG-----KVAEAKELFETA 724

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L R+  + N + Y  LI  LC D ++      E    +  RL   G   D  ++  +I+ 
Sbjct: 725 LDRSFDIGNFL-YKDLIDRLCKDEKL------EAASDVLHRLIDKGYQFDPASFMPVIDG 777

Query: 369 FCKIG 373
           F K+G
Sbjct: 778 FGKMG 782



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 107/268 (39%), Gaps = 34/268 (12%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D A  + F+   C+   EG I+S     A  V   M   R     + ++N L   L    
Sbjct: 558 DSAIYDTFIHSFCR---EGKISS-----AFQVLKDM-EKRGCNKTLQTYNSLILGLGSKN 608

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
               +  L   +   G+ PD  TYN ++NC C+ GR++    VL  +L+   +P+  +F 
Sbjct: 609 QIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFR 668

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
            LIK  C       +  +F ++ +  C      Y  + N L   G    A  LFE   + 
Sbjct: 669 ILIKAFCKACDFKASHEVF-EIALNVCGHKEALYTLMFNELLVGGKVAEAKELFETALDR 727

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM---AFYFPLVRVQC 281
           + + G         Y  +ID LCK+            A+   L+++    + F       
Sbjct: 728 SFDIG------NFLYKDLIDRLCKDE--------KLEAASDVLHRLIDKGYQFDPA---- 769

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSL 309
              +F+ +IDG  K+    +A EL + +
Sbjct: 770 ---SFMPVIDGFGKMGNKHVADELAERM 794


>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
          Length = 662

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 151/363 (41%), Gaps = 56/363 (15%)

Query: 83  MRPSRPPVT---SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           MR SR       S+  +   L K    D    +   L   GL P   TYN+L++  CK G
Sbjct: 1   MRESRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSG 60

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           RV   F + GR+ +   TP  VTF  LI  L    R  E   +  ++   G   +   YN
Sbjct: 61  RVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYN 120

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--------- 250
            LI   CR GH   AL LF+EM           +P A+TY+ I   LCKE          
Sbjct: 121 ELIGWHCRKGHCSQALRLFDEMVLKK------MKPTAVTYNLIAKALCKEGEMERAERIL 174

Query: 251 ------GSANFLG-FSCMASF------------SALNKMAF--YFPLVRVQCLCLNFLC- 288
                 G     G F+ + ++            S  N+M      P   +   C+  LC 
Sbjct: 175 EDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCK 234

Query: 289 ----------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                         L K   +K A ++ Q++   G+  + +TYNI+IRG C D +M+E  
Sbjct: 235 GGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEE-- 292

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  L   +   G  PDL+T+N L++ +C +G++   F +  ++      PD V++ 
Sbjct: 293 ----AIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYG 348

Query: 399 SLI 401
           ++I
Sbjct: 349 TII 351



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 135/324 (41%), Gaps = 26/324 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F IL   LA+ + +  V  + + +   G+ P+   YN LI   C+ G  S    +
Sbjct: 79  PSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRL 138

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC- 206
              ++     P AVT+  + K LC E  +  A  +   +   G  +    +NT++  L  
Sbjct: 139 FDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQ 198

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           RT      +++  EM            P+    +  +  LCK       +G      F  
Sbjct: 199 RTRRLESVVSITNEMVTRG------MRPNDPLMTACMRELCKGGKHQEAVGI----WFKT 248

Query: 267 LNKMAFYFPLVRVQCLCLN---------FLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
           LNK  +     +V    LN         +  +I G CK SK++ A +L   + R G  P+
Sbjct: 249 LNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPD 308

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           + T+N L+   CN G+M+ET      F L  ++ + GL PD+ +Y  +I+  CK   +  
Sbjct: 309 LFTFNTLLHAYCNLGKMEET------FHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRK 362

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
                  ++     P+   + +LI
Sbjct: 363 AKEYLTELMDRGLKPNVFIYNALI 386



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 133/310 (42%), Gaps = 32/310 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  V   MLN       +T +NI+     K    +  + L   +   G  PD +T+N L
Sbjct: 257 EATKVIQTMLNKGIELDSIT-YNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTL 315

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ +C +G++   F +L ++      PD V++ ++I   C    I +A    T+L   G 
Sbjct: 316 LHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGL 375

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + +VF YN LI G  R G    A++  E M + NG      +P  +TY +++  +C  AG
Sbjct: 376 KPNVFIYNALIGGYGRNGDISGAIDAVETMKS-NG-----IQPTNVTYGSLMYWMC-HAG 428

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVR---VQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                          + +    F   R   V    + +  +I G CK+ K+  A   F+ 
Sbjct: 429 --------------LVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEE 474

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI-N 367
           +   G+ PN +TY  L+      G  +E         LF  +  +G+ PD  TY  LI  
Sbjct: 475 MRSRGISPNKLTYTTLMYAYSKSGNSEEASK------LFDEMVGSGVIPDNITYGTLIAR 528

Query: 368 CFCKIGRVSS 377
           C  K G+ + 
Sbjct: 529 CSEKGGKTTQ 538



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 136/334 (40%), Gaps = 40/334 (11%)

Query: 83  MRPSRPPVTS--------------FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           MRP+ P +T+                I F  L K K+      + + +   G+  D  TY
Sbjct: 218 MRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITY 277

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NI+I   CK  ++     + G + R  F PD  TF +L+   C   ++ E   L  +++ 
Sbjct: 278 NIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKT 337

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + D+ +Y T+I+G C+      A     E+ +         +P+   Y+ +I G  +
Sbjct: 338 EGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRG------LKPNVFIYNALIGGYGR 391

Query: 249 EAG-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
               S        M S               +Q   + +  L+  +C    ++ A+ +F 
Sbjct: 392 NGDISGAIDAVETMKSNG-------------IQPTNVTYGSLMYWMCHAGLVEEAKTIFS 438

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
                 +   V+ Y I+I+G C  G+M E   Y      F+ + S G+ P+  TY  L+ 
Sbjct: 439 QARENNVDLGVIGYTIMIQGYCKLGKMVEAVAY------FEEMRSRGISPNKLTYTTLMY 492

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            + K G       +F  ++ S   PD +T+ +LI
Sbjct: 493 AYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLI 526



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 29/149 (19%)

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET------- 337
           ++  +I  LCK  K+    E+   L RAGL P VVTYN+L+  LC  G+++E        
Sbjct: 13  SYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRM 72

Query: 338 ----------------------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
                                 + +  V ++ + +   G+ P+   YN LI   C+ G  
Sbjct: 73  EQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHC 132

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           S    +F  ++     P AVT+  + K L
Sbjct: 133 SQALRLFDEMVLKKMKPTAVTYNLIAKAL 161



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 6/98 (6%)

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           N  +Y  +I+ LC  G++D        F +   L   GL P + TYN+L++  CK GRV 
Sbjct: 10  NEYSYTAMIKALCKAGKVDAG------FEMLAELWRAGLQPTVVTYNVLMDALCKSGRVE 63

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
             F + GR+     TP  VTF  LI  L     F +V 
Sbjct: 64  EAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVG 101


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 165/373 (44%), Gaps = 43/373 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD ML  +   P + ++ I+   L      D  L L + +    L P  +  N+
Sbjct: 54  SKARKIFDDML-YKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNM 112

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++C CK G+V   + +  R+   C + D +++  L   LC   +I  A A+F ++    
Sbjct: 113 LVSCLCKNGKVDAAYELYKRLSDEC-SLDRISYNMLTYGLCKADQIDRALAVFGEMEENA 171

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
               + TYN L+ G CR G    A+ L EEM  G     VV  PD  +Y+T+I G CK  
Sbjct: 172 VVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVV--PDMYSYNTVISGFCKAR 229

Query: 249 -------------EAG-SANFLGFSCM-------ASFSALNKMAFYFPLVRVQCLCLNFL 287
                        ++G S N + F+ +             N M  Y      +   + + 
Sbjct: 230 QLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYT 289

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI G  +  ++  A + F  + R G+ PNV TY  LI GLC+  ++      E    + 
Sbjct: 290 VLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKV------EDALEIL 343

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT---PDAVTFTSLI--- 401
           KR++STG  P++ TY  +I   CK G++     +F   + S      PD+  ++++I   
Sbjct: 344 KRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIIYWL 403

Query: 402 ----KILEINSFF 410
               K LE   +F
Sbjct: 404 CRQSKFLEAYEYF 416



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 144/322 (44%), Gaps = 31/322 (9%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S+N+L   L K    D  L++F  +    + P   TYN L+  +C+ GR+     +L  +
Sbjct: 143 SYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEM 202

Query: 152 LR----SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +     S   PD  ++ ++I   C   ++  A  +  ++   GC  +V T+NTL++GLC 
Sbjct: 203 IEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCL 262

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           TG    A  +FE M   N      CEP A+TY+ +I G                A    +
Sbjct: 263 TGKLDEANAMFEYMVERN------CEPTAVTYTVLITG---------------HARALRI 301

Query: 268 NKMAFYF-PLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           +K   YF  ++R  V+     +  LI GLC  +K++ A E+ + +   G  PNVVTY  +
Sbjct: 302 DKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRV 361

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I  LC  GQ++       +F       +    PD Y Y+ +I   C+  +    +  F R
Sbjct: 362 IGALCKGGQIERATK---LFNDAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLR 418

Query: 385 ILPSCFTPDAVTFTSLIKILEI 406
           ++ S        + ++   LE+
Sbjct: 419 MVESKLVAKPHIYKAMADGLEL 440



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 118/280 (42%), Gaps = 25/280 (8%)

Query: 71  NEALCVFDYMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYT 127
            +A+ + + M+  +      P + S+N +     K +   T   + +R+  +G  P+  T
Sbjct: 193 EQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVT 252

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           +N L++  C  G++     +   ++     P AVT+T LI       RI +A   F  + 
Sbjct: 253 FNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDML 312

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G E +V+TY  LI GLC       AL + + M++         EP+ +TY+ +I  LC
Sbjct: 313 RRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGR------EPNVVTYTRVIGALC 366

Query: 248 K--EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           K  +   A  L    M S +A  K   Y            +  +I  LC+ SK   A E 
Sbjct: 367 KGGQIERATKLFNDAMGSRTAKCKPDSY-----------AYSTIIYWLCRQSKFLEAYEY 415

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  +  + L+     Y  +  GL     + ET+  E V L
Sbjct: 416 FLRMVESKLVAKPHIYKAMADGL---ELVQETEKVERVCL 452


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 145/311 (46%), Gaps = 18/311 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     ++   S+ + +   G  PD  TY+ +I   C   +V + F++   +  +   P
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVP 513

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T LI   C    + +A   F ++   GC  +V TY  LI+   +      A  LF
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPL- 276
           E M +        C P+ +TY+ +IDG CK          ++ M   + +  +  YF + 
Sbjct: 574 EMMLSEG------CIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKID 627

Query: 277 ---VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
              +R   +   +  L+DGLCK  K+K AR+L   +   G  PN + Y+ LI G C  G+
Sbjct: 628 DGNIRDPNI-FTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK 686

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           +DE +      ++F +++  G  P++YTY+ LI+   K  R+     +  R+L +   P+
Sbjct: 687 LDEAQ------MVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPN 740

Query: 394 AVTFTSLIKIL 404
            + +T +I  L
Sbjct: 741 VIIYTEMIDGL 751



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 140/325 (43%), Gaps = 30/325 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  ++++ + G L      D    LF+ +    + PD +TY ILI+ FCK+G +      
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++R    P+ VT+T+LI       ++  A  LF  +   GC  +V TY  LI+G C+
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 208 TGHTIVALNLFEEMANGNGEF-----------GVVCEPDAITYSTIIDGLCKEAGSANFL 256
           +G    A  ++  M  GN +            G + +P+  TY  ++DGLCK        
Sbjct: 598 SGQIEKACQIYARM-RGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEAR 656

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
               + S          +              LIDG CK+ KL  A+ +F  +   G  P
Sbjct: 657 DLLDVMSVEGCEPNHIVYD------------ALIDGFCKVGKLDEAQMVFTKMSERGYGP 704

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           NV TY+ LI  L  D ++D          +  R+      P++  Y  +I+  CK+G+  
Sbjct: 705 NVYTYSSLIDRLFKDKRLD------LALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTD 758

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
             + +   +      P+ VT+T++I
Sbjct: 759 EAYRLMSMMEEKGCHPNVVTYTAMI 783



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 153/358 (42%), Gaps = 63/358 (17%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L  +PSR    ++N L     +    DT   + + ++ +G   D YT    ++  CK GR
Sbjct: 226 LGYKPSR---LTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGR 282

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY-- 198
                  L  I +  F  D V +T +I  LC  S   EA    +++R   C  +V TY  
Sbjct: 283 WREA---LALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRI 339

Query: 199 ---------------------------------NTLINGLCRTGHTIVALNLFEEMANGN 225
                                            N+LI+  CR+G    A  L ++M    
Sbjct: 340 LLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM---- 395

Query: 226 GEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
           G+ G  C+P  + Y+ +I G+C  ++  S + L  +  A    L+    +  L +V    
Sbjct: 396 GDCG--CQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDA---HVVLNKV---- 446

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
            N   L   LC   K + A  + + +   G +P+  TY+ +I  LCN  ++D        
Sbjct: 447 -NVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVD------NA 499

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           FLLF+ + S  + PD++TY ILI+ FCK+G +      F  ++     P+ VT+T+LI
Sbjct: 500 FLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALI 557



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 138/328 (42%), Gaps = 36/328 (10%)

Query: 76  VFDYMLNMRPSR--PPVTSFNILF-GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
             D++  MR S   P V ++ IL  GCL K +       +   +   G +P R  +N LI
Sbjct: 318 AMDFLSRMRSSSCIPNVVTYRILLCGCLRK-RQLGRCKRILSMMITEGCYPSRRIFNSLI 376

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + +C+ G  S+ + +L ++      P  V +  LI  +C   ++     L    + +G  
Sbjct: 377 HAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEM 436

Query: 193 LDVFT------YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           LD          + L   LC  G    A ++  EM +     G +  PD  TYS +I  L
Sbjct: 437 LDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSK----GFI--PDTSTYSKVIGLL 490

Query: 247 CKEAGSAN-FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           C  +   N FL F  M S   +       P V        +  LID  CK+  L+ AR+ 
Sbjct: 491 CNASKVDNAFLLFEEMKSNHVV-------PDV------FTYTILIDSFCKVGLLQQARKW 537

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  + R G  PNVVTY  LI       +M           LF+ + S G  P++ TY  L
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANE------LFEMMLSEGCIPNVVTYTAL 591

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPD 393
           I+  CK G++     I+ R+  +   PD
Sbjct: 592 IDGHCKSGQIEKACQIYARMRGNADIPD 619



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 139/351 (39%), Gaps = 84/351 (23%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++  L   L K         L   +++ G  P+   Y+ LI+ FCK+G++    +V
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++    + P+  T++SLI  L  + R+  A  + +++    C  +V  Y  +I+GLC+
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G T  A  L   M          C P+ +TY+ +IDG  K AG  +             
Sbjct: 754 VGKTDEAYRLMSMMEEKG------CHPNVVTYTAMIDGFGK-AGKVD------------- 793

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                       +CL                     EL + +   G  PN VTY +LI  
Sbjct: 794 ------------KCL---------------------ELMRQMGAKGCAPNFVTYRVLINH 820

Query: 328 LCNDGQMDET-------------KH---YETVFLLFKR--LNSTGLF---------PDLY 360
            C  G +D+              KH   Y  V   F R  + S GL          P + 
Sbjct: 821 CCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIP 880

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFT---PDAVTFTSLIKILEINS 408
            Y ILI+ FCK GR+     +  + + SC +    D   ++SLI+ L + S
Sbjct: 881 AYRILIDSFCKAGRLELALELH-KXMSSCTSYSAADKDLYSSLIESLSLAS 930



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 140/341 (41%), Gaps = 32/341 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  + D M ++    P    ++ L     K    D    +F +++  G  P+ YTY+ 
Sbjct: 653 KEARDLLDVM-SVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSS 711

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+   K  R+     VL R+L +   P+ + +T +I  LC   +  EA  L + +   G
Sbjct: 712 LIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKG 771

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V TY  +I+G  + G     L L  +M          C P+ +TY  +I+  C   
Sbjct: 772 CHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKG------CAPNFVTYRVLINHCC--- 822

Query: 251 GSANFLGFSCMASFSALNKM-AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
            +A  L      +   L++M   Y+P          +  +I+G  +  +  I+  L   +
Sbjct: 823 -AAGLLD----DAHQLLDEMKQTYWPKHMA-----GYRKVIEGFNR--EFIISLGLLDEI 870

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF--PDLYTYNILIN 367
                +P +  Y ILI   C  G++      E    L K ++S   +   D   Y+ LI 
Sbjct: 871 AENVAVPIIPAYRILIDSFCKAGRL------ELALELHKXMSSCTSYSAADKDLYSSLIE 924

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-ILEIN 407
                 +V   F ++  ++     P+   F  L+K ++ IN
Sbjct: 925 SLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRIN 965


>gi|255661002|gb|ACU25670.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 376

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 149/317 (47%), Gaps = 28/317 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L      D V+S+++ +  +    D  T+ IL++ FCK G ++    VL 
Sbjct: 59  VSSFNIMMRGLFDKGKVDEVISIWELMKKSDFVEDSITFGILVHGFCKNGYINKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
                    DA  ++++I  LC E+ + +A  +   +   GC+ +   YNTLINGL    
Sbjct: 119 MAZXKGGVLDAFAYSAMINGLCKEANLDKAVXVLNDMIKSGCKPNAHVYNTLINGLVGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSAL 267
               A+ +F EM        V C P  ITY+T+I+GLCK    G A  L    +     L
Sbjct: 179 KFEDAIRVFREMGX------VRCSPTIITYNTLINGLCKNEMFGEAYDLVKDMLE--KGL 230

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N     + +            L+ GLC   K++ A +L+  +   G  P+V  +NILI G
Sbjct: 231 NPSVITYSM------------LMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHG 278

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC+ G+       +    L+  +N     P+L T+N L+  F K G + +  VI+ R L 
Sbjct: 279 LCSVGKT------QLALSLYFDMNRWKCAPNLVTHNTLMEGFYKDGDIRNALVIWARXLR 332

Query: 388 SCFTPDAVTFTSLIKIL 404
           +   PD +++   +K L
Sbjct: 333 NGLEPDIISYNITLKGL 349



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 143/328 (43%), Gaps = 29/328 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E + +++ M         +T F IL     K  + +  L + +     G   D + Y+ 
Sbjct: 76  DEVISIWELMKKSDFVEDSIT-FGILVHGFCKNGYINKSLHVLEMAZXKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK   +     VL  +++S   P+A  + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINGLCKEANLDKAVXVLNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGXVR 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A +L ++M     E G+   P  ITYS ++ GLC   
Sbjct: 195 CSPTIITYNTLINGLCKNEMFGEAYDLVKDML----EKGL--NPSVITYSMLMKGLC--- 245

Query: 251 GSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                L      +    N++    + P V++  +      LI GLC + K ++A  L+  
Sbjct: 246 -----LDHKVERALQLWNQVISKGFKPDVQMHNI------LIHGLCSVGKTQLALSLYFD 294

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + R    PN+VT+N L+ G   DG +          +++ R    GL PD+ +YNI +  
Sbjct: 295 MNRWKCAPNLVTHNTLMEGFYKDGDI------RNALVIWARXLRNGLEPDIISYNITLKG 348

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVT 396
            C   R+    +     +     P  +T
Sbjct: 349 LCSCNRICDAILFLHDAVRKKIVPTKIT 376



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 60/113 (53%), Gaps = 7/113 (6%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++G  +++K+K   EL++ +   G   +V ++NI++RGL + G++DE      V  +++
Sbjct: 31  MLNGYFRVAKIKDCFELWEMMGNEG-NRSVSSFNIMMRGLFDKGKVDE------VISIWE 83

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +  +    D  T+ IL++ FCK G ++    +           DA  ++++I
Sbjct: 84  LMKKSDFVEDSITFGILVHGFCKNGYINKSLHVLEMAZXKGGVLDAFAYSAMI 136



 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 84/220 (38%), Gaps = 27/220 (12%)

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMAN-GNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           D   +N ++NG  R         L+E M N GN            +++ ++ GL  + G 
Sbjct: 24  DAVVHNAMLNGYFRVAKIKDCFELWEMMGNEGNRSVS--------SFNIMMRGLF-DKGK 74

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
            +      ++ +  + K  F           + F  L+ G CK   +  +  + +     
Sbjct: 75  VD----EVISIWELMKKSDFVED-------SITFGILVHGFCKNGYINKSLHVLEMAZXK 123

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G + +   Y+ +I GLC +  +D+         +   +  +G  P+ + YN LIN     
Sbjct: 124 GGVLDAFAYSAMINGLCKEANLDKA------VXVLNDMIKSGCKPNAHVYNTLINGLVGA 177

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            +      +F  +     +P  +T+ +LI  L  N  F +
Sbjct: 178 SKFEDAIRVFREMGXVRCSPTIITYNTLINGLCKNEMFGE 217


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 145/311 (46%), Gaps = 18/311 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     ++   S+ + +   G  PD  TY+ +I   C   +V + F++   +  +   P
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVP 513

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T LI   C    + +A   F ++   GC  +V TY  LI+   +      A  LF
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPL- 276
           E M +        C P+ +TY+ +IDG CK          ++ M   + +  +  YF + 
Sbjct: 574 EMMLSEG------CIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKID 627

Query: 277 ---VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
              +R   +   +  L+DGLCK  K+K AR+L   +   G  PN + Y+ LI G C  G+
Sbjct: 628 DGNIRDPNI-FTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK 686

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           +DE +      ++F +++  G  P++YTY+ LI+   K  R+     +  R+L +   P+
Sbjct: 687 LDEAQ------MVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPN 740

Query: 394 AVTFTSLIKIL 404
            + +T +I  L
Sbjct: 741 VIIYTEMIDGL 751



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 140/325 (43%), Gaps = 30/325 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  ++++ + G L      D    LF+ +    + PD +TY ILI+ FCK+G +      
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++R    P+ VT+T+LI       ++  A  LF  +   GC  +V TY  LI+G C+
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 208 TGHTIVALNLFEEMANGNGEF-----------GVVCEPDAITYSTIIDGLCKEAGSANFL 256
           +G    A  ++  M  GN +            G + +P+  TY  ++DGLCK        
Sbjct: 598 SGQIEKACQIYARM-RGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEAR 656

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
               + S          +              LIDG CK+ KL  A+ +F  +   G  P
Sbjct: 657 DLLDVMSVEGCEPNHIVYD------------ALIDGFCKVGKLDEAQMVFTKMSERGYGP 704

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           NV TY+ LI  L  D ++D          +  R+      P++  Y  +I+  CK+G+  
Sbjct: 705 NVYTYSSLIDRLFKDKRLD------LALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTD 758

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
             + +   +      P+ VT+T++I
Sbjct: 759 EAYRLMSMMEEKGCHPNVVTYTAMI 783



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 153/358 (42%), Gaps = 63/358 (17%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L  +PSR    ++N L     +    DT   + + ++ +G   D YT    ++  CK GR
Sbjct: 226 LGYKPSR---LTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGR 282

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY-- 198
                  L  I +  F  D V +T +I  LC  S   EA    +++R   C  +V TY  
Sbjct: 283 WREA---LALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRI 339

Query: 199 ---------------------------------NTLINGLCRTGHTIVALNLFEEMANGN 225
                                            N+LI+  CR+G    A  L ++M    
Sbjct: 340 LLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM---- 395

Query: 226 GEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
           G+ G  C+P  + Y+ +I G+C  ++  S + L  +  A    L+    +  L +V    
Sbjct: 396 GDCG--CQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDA---HVVLNKV---- 446

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
            N   L   LC   K + A  + + +   G +P+  TY+ +I  LCN  ++D        
Sbjct: 447 -NVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVD------NA 499

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           FLLF+ + S  + PD++TY ILI+ FCK+G +      F  ++     P+ VT+T+LI
Sbjct: 500 FLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALI 557



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 138/328 (42%), Gaps = 36/328 (10%)

Query: 76  VFDYMLNMRPSR--PPVTSFNILF-GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
             D++  MR S   P V ++ IL  GCL K +       +   +   G +P R  +N LI
Sbjct: 318 AMDFLSRMRSSSCIPNVVTYRILLCGCLRK-RQLGRCKRILSMMITEGCYPSRRIFNSLI 376

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + +C+ G  S+ + +L ++      P  V +  LI  +C   ++     L    + +G  
Sbjct: 377 HAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEM 436

Query: 193 LDVFT------YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           LD          + L   LC  G    A ++  EM +     G +  PD  TYS +I  L
Sbjct: 437 LDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSK----GFI--PDTSTYSKVIGLL 490

Query: 247 CKEAGSAN-FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           C  +   N FL F  M S   +       P V        +  LID  CK+  L+ AR+ 
Sbjct: 491 CNASKVDNAFLLFEEMKSNHVV-------PDV------FTYTILIDSFCKVGLLQQARKW 537

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  + R G  PNVVTY  LI       +M           LF+ + S G  P++ TY  L
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANE------LFEMMLSEGCIPNVVTYTAL 591

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPD 393
           I+  CK G++     I+ R+  +   PD
Sbjct: 592 IDGHCKSGQIEKACQIYARMRGNADIPD 619



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 139/351 (39%), Gaps = 84/351 (23%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++  L   L K         L   +++ G  P+   Y+ LI+ FCK+G++    +V
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++    + P+  T++SLI  L  + R+  A  + +++    C  +V  Y  +I+GLC+
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G T  A  L   M          C P+ +TY+ +IDG  K AG  +             
Sbjct: 754 VGKTDEAYRLMSMMEEKG------CHPNVVTYTAMIDGFGK-AGKVD------------- 793

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                       +CL                     EL + +   G  PN VTY +LI  
Sbjct: 794 ------------KCL---------------------ELMRQMGAKGCAPNFVTYRVLINH 820

Query: 328 LCNDGQMDET-------------KH---YETVFLLFKR--LNSTGLF---------PDLY 360
            C  G +D+              KH   Y  V   F R  + S GL          P + 
Sbjct: 821 CCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIP 880

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFT---PDAVTFTSLIKILEINS 408
            Y ILI+ FCK GR+     +  + + SC +    D   ++SLI+ L + S
Sbjct: 881 AYRILIDSFCKAGRLELALELH-KEMSSCTSYSAADKDLYSSLIESLSLAS 930



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 141/343 (41%), Gaps = 32/343 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  + D M ++    P    ++ L     K    D    +F +++  G  P+ YTY+ 
Sbjct: 653 KEARDLLDVM-SVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSS 711

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+   K  R+     VL R+L +   P+ + +T +I  LC   +  EA  L + +   G
Sbjct: 712 LIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKG 771

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V TY  +I+G  + G     L L  +M          C P+ +TY  +I+  C   
Sbjct: 772 CHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKG------CAPNFVTYRVLINHCC--- 822

Query: 251 GSANFLGFSCMASFSALNKM-AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
            +A  L      +   L++M   Y+P          +  +I+G  +  +  I+  L   +
Sbjct: 823 -AAGLLD----DAHQLLDEMKQTYWPKHMA-----GYRKVIEGFNR--EFIISLGLLDEI 870

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF--PDLYTYNILIN 367
                +P +  Y ILI   C  G++      E    L K ++S   +   D   Y+ LI 
Sbjct: 871 AENVAVPIIPAYRILIDSFCKAGRL------ELALELHKEMSSCTSYSAADKDLYSSLIE 924

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-ILEINSF 409
                 +V   F ++  ++     P+   F  L+K ++ IN +
Sbjct: 925 SLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRW 967



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 115/299 (38%), Gaps = 48/299 (16%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  VF  M + R   P V +++ L   L K K  D  L +  R+      P+   Y  
Sbjct: 688 DEAQMVFTKM-SERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTE 746

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK+G+    + ++  +      P+ VT+T++I       ++ +   L  ++   G
Sbjct: 747 MIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKG 806

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANG----------------NGEFGV---- 230
           C  +  TY  LIN  C  G    A  L +EM                   N EF +    
Sbjct: 807 CAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGL 866

Query: 231 -------VCEPDAITYSTIIDGLCKEAGSANFL-----GFSCMASFSALNKMAFYFPLVR 278
                  V  P    Y  +ID  CK AG            S   S+SA +K  +      
Sbjct: 867 LDEIAENVAVPIIPAYRILIDSFCK-AGRLELALELHKEMSSCTSYSAADKDLYS----- 920

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                     LI+ L   SK+  A EL+  + + G +P +  +  L++GL    + +E 
Sbjct: 921 ---------SLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEA 970


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 155/337 (45%), Gaps = 39/337 (11%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  +N L     +    + V  LF  + + G+ PD  TY+ +IN   +MG V     VL 
Sbjct: 243 VPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLA 302

Query: 150 RI-LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
           ++ LR C +P+  TFTSL+K      R+ EA  L+ ++   G E +   YNTLI+GLC  
Sbjct: 303 KMFLRGC-SPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSY 361

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---GSA------------ 253
           G  + A+++ ++M   NG F     P+  TYST+IDG  K     G++            
Sbjct: 362 GKMVEAVSVSQKMER-NGVF-----PNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCL 415

Query: 254 -NFLGFSCMASFSALNKMAFYFPLVRVQCLC--------LNFLCLIDGLCKISKLKIARE 304
            N + ++CM      N M F   L  ++ +         + F   I GLC   K + A +
Sbjct: 416 PNVVVYTCMVDVLCRNSM-FNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMK 474

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +   + + G  PNV TYN ++ GL N       K       +   +    +  +L TYN 
Sbjct: 475 VLNQMRQYGCAPNVTTYNEVLDGLFN------AKRTREALQIVGEIEEMEIKSNLVTYNT 528

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +++ FC  G       I G++L     PD++T+ ++I
Sbjct: 529 ILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVI 565



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 150/326 (46%), Gaps = 29/326 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N +   L     +  +  ++  +   G+  + YTYN+L+   CK  RV     
Sbjct: 140 KPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARK 199

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +      PDAV++T+++  +C   ++ EA  L  +++ F     V  YN LING C
Sbjct: 200 LLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKSF-----VPVYNALINGFC 254

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R         LF EMA          +PD ITYST+I+ L  E G+          + + 
Sbjct: 255 REHKMEEVFELFNEMAVEG------IDPDVITYSTVINTL-SEMGNVEM-------ALAV 300

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L KM        V      F  L+ G     +L  A +L+  + + G  PN V YN LI 
Sbjct: 301 LAKMFLRGCSPNVH----TFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIH 356

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC+ G+M E         + +++   G+FP+  TY+ LI+ F K G +     I+ +++
Sbjct: 357 GLCSYGKMVEA------VSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMI 410

Query: 387 PSCFTPDAVTFTSLIKILEINSFFRQ 412
            +   P+ V +T ++ +L  NS F  
Sbjct: 411 TNGCLPNVVVYTCMVDVLCRNSMFNH 436



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 150/334 (44%), Gaps = 26/334 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +++ M+    S P   ++N L   L         +S+ +++   G+FP+  TY+ L
Sbjct: 331 EALDLWNRMIQ-EGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTL 389

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ F K G +     +  +++ +   P+ V +T ++  LC  S    A  L   +    C
Sbjct: 390 IDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNC 449

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T+NT I GLC +G T  A+ +  +M     ++G  C P+  TY+ ++DGL     
Sbjct: 450 PPNTITFNTFIKGLCCSGKTEWAMKVLNQMR----QYG--CAPNVTTYNEVLDGL----- 498

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                 F+   +  AL ++      + ++   + +  ++ G C     K A ++   L  
Sbjct: 499 ------FNAKRTREAL-QIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLV 551

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL-FPDLYTYNILINCFC 370
            G  P+ +TYN +I   C  G++      +T   L  RL   G  +PD++TY  L+   C
Sbjct: 552 GGTKPDSITYNTVIYAYCKQGEV------KTAIQLVDRLTKKGEGYPDVFTYTSLLWGVC 605

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
               V    V   +++     P+  T+ +L++ L
Sbjct: 606 NWIGVDEAVVHLDKMINEGICPNRATWNALVRGL 639


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 144/310 (46%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI G C+ G   
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ +++ M + +        PD ITY+T+I GLCK+             S   L    F
Sbjct: 265 LAMEIYKXMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKF 318

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L  A +  + + +  +  + V Y  LI GLC +G
Sbjct: 319 ------------TYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEG 366

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD+ TY ++IN FCK G V  G  +   +  +   
Sbjct: 367 RSVDAEK-------MLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHV 419

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 420 PSVVTYNVLM 429



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 132/295 (44%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 161 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 219

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++  +      
Sbjct: 220 NGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLL 279

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A  L +EM+          +PD  TY+T+IDG CKE   
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKG------LKPDKFTYTTLIDGCCKEG-- 331

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 332 ------DLDTAFKHRKRMI----QGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 381

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P++ TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 382 GLKPDIGTYTMIINEFCKKGDVWKGSK------LLKEMQRNGHVPSVVTYNVLMN 430



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 111/241 (46%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI   CK GRV     
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAME 268

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L     PD +T+ +LI  LC +  + +A  L  ++ + G + D FTY TLI+G C
Sbjct: 269 IYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCC 328

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M  GN         D + Y+ +I GLC+E  S +            
Sbjct: 329 KEGDLDTAFKHRKRMIQGN------IRLDDVAYTALISGLCQEGRSVD------------ 370

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G +P+VVTYN+L+ 
Sbjct: 371 AEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMN 430

Query: 327 G 327
           G
Sbjct: 431 G 431



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+ +   P + ++N L   L K         L   +++ GL PD++TY  LI
Sbjct: 266 AMEIYKXMLS-QSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLI 324

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E R ++A  +  ++   G +
Sbjct: 325 DGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 193 LD-----------------------------------VFTYNTLING 204
            D                                   V TYN L+NG
Sbjct: 385 PDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 113 VLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 166

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 219


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 144/308 (46%), Gaps = 18/308 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     ++   S+ + +   G  PD  TY+ +I   C   +V + F++   +  +   P
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVP 513

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T LI   C    + +A   F ++   GC  +V TY  LI+   +      A  LF
Sbjct: 514 DVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF 573

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPL- 276
           E M +        C P+ +TY+ +IDG CK          ++ M   + +  +  YF + 
Sbjct: 574 EMMLSEG------CIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKID 627

Query: 277 ---VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
              +R   +   +  L+DGLCK  K+K AR+L   +   G  PN + Y+ LI G C  G+
Sbjct: 628 DGNIRDPNI-FTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK 686

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           +DE +      ++F +++  G  P++YTY+ LI+   K  R+     +  R+L +   P+
Sbjct: 687 LDEAQ------MVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPN 740

Query: 394 AVTFTSLI 401
            + +T +I
Sbjct: 741 VIIYTEMI 748



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 140/325 (43%), Gaps = 30/325 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  ++++ + G L      D    LF+ +    + PD +TY ILI+ FCK+G +      
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++R    P+ VT+T+LI       ++  A  LF  +   GC  +V TY  LI+G C+
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 208 TGHTIVALNLFEEMANGNGEF-----------GVVCEPDAITYSTIIDGLCKEAGSANFL 256
           +G    A  ++  M  GN +            G + +P+  TY  ++DGLCK        
Sbjct: 598 SGQIEKACQIYARM-RGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEAR 656

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
               + S          +              LIDG CK+ KL  A+ +F  +   G  P
Sbjct: 657 DLLDVMSVEGCEPNHIVYD------------ALIDGFCKVGKLDEAQMVFTKMSERGYGP 704

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           NV TY+ LI  L  D ++D          +  R+      P++  Y  +I+  CK+G+  
Sbjct: 705 NVYTYSSLIDRLFKDKRLD------LALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTD 758

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
             + +   +      P+ VT+T++I
Sbjct: 759 EAYRLMSMMEEKGCHPNVVTYTAMI 783



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 153/358 (42%), Gaps = 63/358 (17%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L  +PSR    ++N L     +    DT   + + ++ +G   D YT    ++  CK GR
Sbjct: 226 LGYKPSR---LTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGR 282

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY-- 198
                  L  I +  F  D V +T +I  LC  S   EA    +++R   C  +V TY  
Sbjct: 283 WREA---LALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRI 339

Query: 199 ---------------------------------NTLINGLCRTGHTIVALNLFEEMANGN 225
                                            N+LI+  CR+G    A  L ++M    
Sbjct: 340 LLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKM---- 395

Query: 226 GEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
           G+ G  C+P  + Y+ +I G+C  ++  S + L  +  A    L+    +  L +V    
Sbjct: 396 GDCG--CQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDA---HVVLNKV---- 446

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
            N   L   LC   K + A  + + +   G +P+  TY+ +I  LCN  ++D        
Sbjct: 447 -NVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVD------NA 499

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           FLLF+ + S  + PD++TY ILI+ FCK+G +      F  ++     P+ VT+T+LI
Sbjct: 500 FLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALI 557



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 138/328 (42%), Gaps = 36/328 (10%)

Query: 76  VFDYMLNMRPSR--PPVTSFNILF-GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
             D++  MR S   P V ++ IL  GCL K +       +   +   G +P R  +N LI
Sbjct: 318 AMDFLSRMRSSSCIPNVVTYRILLCGCLRK-RQLGRCKRILSMMITEGCYPSRRIFNSLI 376

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + +C+ G  S+ + +L ++      P  V +  LI  +C   ++     L    + +G  
Sbjct: 377 HAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEM 436

Query: 193 LDVFT------YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           LD          + L   LC  G    A ++  EM +     G +  PD  TYS +I  L
Sbjct: 437 LDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSK----GFI--PDTSTYSKVIGLL 490

Query: 247 CKEAGSAN-FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           C  +   N FL F  M S   +       P V        +  LID  CK+  L+ AR+ 
Sbjct: 491 CNASKVDNAFLLFEEMKSNHVV-------PDV------FTYTILIDSFCKVGLLQQARKW 537

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  + R G  PNVVTY  LI       +M           LF+ + S G  P++ TY  L
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANE------LFEMMLSEGCIPNVVTYTAL 591

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPD 393
           I+  CK G++     I+ R+  +   PD
Sbjct: 592 IDGHCKSGQIEKACQIYARMRGNADIPD 619



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 139/351 (39%), Gaps = 84/351 (23%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++  L   L K         L   +++ G  P+   Y+ LI+ FCK+G++    +V
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++    + P+  T++SLI  L  + R+  A  + +++    C  +V  Y  +I+GLC+
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G T  A  L   M          C P+ +TY+ +IDG  K AG  +             
Sbjct: 754 VGKTDEAYRLMSMMEEKG------CHPNVVTYTAMIDGFGK-AGKVD------------- 793

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                       +CL                     EL + +   G  PN VTY +LI  
Sbjct: 794 ------------KCL---------------------ELMRQMGAKGCAPNFVTYRVLINH 820

Query: 328 LCNDGQMDET-------------KH---YETVFLLFKR--LNSTGLF---------PDLY 360
            C  G +D+              KH   Y  V   F R  + S GL          P + 
Sbjct: 821 CCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPIIP 880

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFT---PDAVTFTSLIKILEINS 408
            Y ILI+ FCK GR+     +  + + SC +    D   ++SLI+ L + S
Sbjct: 881 AYRILIDSFCKAGRLELALELH-KEMSSCTSYSAADKDLYSSLIESLSLAS 930



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 143/343 (41%), Gaps = 32/343 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  + D M ++    P    ++ L     K    D    +F +++  G  P+ YTY+ 
Sbjct: 653 KEARDLLDVM-SVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSS 711

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+   K  R+     VL R+L +   P+ + +T +I  LC   +  EA  L + +   G
Sbjct: 712 LIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKG 771

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V TY  +I+G  + G     L L  +M    G  G  C P+ +TY  +I+  C   
Sbjct: 772 CHPNVVTYTAMIDGFGKAGKVDKCLELMRQM----GAKG--CAPNFVTYRVLINHCC--- 822

Query: 251 GSANFLGFSCMASFSALNKM-AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
            +A  L      +   L++M   Y+P          +  +I+G  +  +  I+  L   +
Sbjct: 823 -AAGLLD----DAHQLLDEMKQTYWPKHMA-----GYRKVIEGFNR--EFIISLGLLDEI 870

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF--PDLYTYNILIN 367
                +P +  Y ILI   C  G++      E    L K ++S   +   D   Y+ LI 
Sbjct: 871 AENVAVPIIPAYRILIDSFCKAGRL------ELALELHKEMSSCTSYSAADKDLYSSLIE 924

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-ILEINSF 409
                 +V   F ++  ++     P+   F  L+K ++ IN +
Sbjct: 925 SLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRW 967



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 115/299 (38%), Gaps = 48/299 (16%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  VF  M + R   P V +++ L   L K K  D  L +  R+      P+   Y  
Sbjct: 688 DEAQMVFTKM-SERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTE 746

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK+G+    + ++  +      P+ VT+T++I       ++ +   L  ++   G
Sbjct: 747 MIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKG 806

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANG----------------NGEFGV---- 230
           C  +  TY  LIN  C  G    A  L +EM                   N EF +    
Sbjct: 807 CAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGL 866

Query: 231 -------VCEPDAITYSTIIDGLCKEAGSANFL-----GFSCMASFSALNKMAFYFPLVR 278
                  V  P    Y  +ID  CK AG            S   S+SA +K  +      
Sbjct: 867 LDEIAENVAVPIIPAYRILIDSFCK-AGRLELALELHKEMSSCTSYSAADKDLYS----- 920

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                     LI+ L   SK+  A EL+  + + G +P +  +  L++GL    + +E 
Sbjct: 921 ---------SLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEA 970


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 150/310 (48%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 141 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 200

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 201 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 260

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ +++ M + +        PD ITY+T+I GLCK+             +   +++M+ 
Sbjct: 261 LAMEIYKRMLSQS------LLPDLITYNTLIYGLCKKG--------DLKQAHHLIDEMS- 305

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 306 ---MKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEG 362

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P+  TY ++IN FCK G V  G  +   +      
Sbjct: 363 RSVDAEK-------MLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 415

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 416 PSVVTYNVLM 425



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 128/281 (45%), Gaps = 24/281 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V S+N L     +    D    L   +  +G+ PD YTY++LIN  CK  ++     
Sbjct: 170 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANE 229

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L     P+ VTFT+LI   C   R+  A  ++ ++       D+ TYNTLI GLC
Sbjct: 230 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLC 289

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A +L +EM+          +PD ITY+T+IDG CKE             +F  
Sbjct: 290 KKGDLKQAHHLIDEMSMKG------LKPDKITYTTLIDGCCKEG--------DLDTAFEH 335

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +M        +    + +  LI GLC+  +   A ++ + +   GL PN  TY ++I 
Sbjct: 336 RKRMI----QENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIIN 391

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
             C  G + +         L K +   G  P + TYN+L+N
Sbjct: 392 EFCKKGDVWKGSK------LLKEMQRDGHVPSVVTYNVLMN 426



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 205 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 264

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  R+L     PD +T+ +LI  LC +  + +A  L  ++ + G + D  TY TLI+G C
Sbjct: 265 IYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCC 324

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 325 KEGDLDTAFEHRKRMIQEN------IXLDDVAYTALISGLCQEGRSVD------------ 366

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G +P+VVTYN+L+ 
Sbjct: 367 AEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 426

Query: 327 G 327
           G
Sbjct: 427 G 427



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 55/124 (44%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++M+  +P   ++  L     K    DT     KR+    +  D   Y  LI+  C+ GR
Sbjct: 304 MSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGR 363

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +L  +L     P+  T+T +I + C +  + + + L  +++  G    V TYN 
Sbjct: 364 SVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNV 423

Query: 201 LING 204
           L+NG
Sbjct: 424 LMNG 427



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 109 VLEHLMKLKYFKLVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 162

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI
Sbjct: 163 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 215


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 169/394 (42%), Gaps = 59/394 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            + L VFD M+  R S P V + N +   L         + +++ +   G+ P   TYN 
Sbjct: 181 EQCLSVFDKMIKSRLS-PDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNT 239

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +CK G+V  G  +L  + R    P+ VT+  LI  L  +    +A  L  ++   G
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            ++  +TYN LI G    G    AL+L EEM            P   TY++ I GLCK  
Sbjct: 300 LKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKG------ASPTVATYNSFIYGLCKLG 353

Query: 251 GSANFL-GFSCMASFSALNKMAFYFPLVRVQCLCLNFL---------------------- 287
             ++ +   S M + + L  +  Y  L+   C   N +                      
Sbjct: 354 RMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYN 413

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-------DETKH- 339
            L+DGLC+  +L++A++L   +   G+ P++VTY IL+ G C  G +       DE  H 
Sbjct: 414 TLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHE 473

Query: 340 --------YET-------------VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
                   Y T              F L + + + G  PDL  YN++++  CK+G +   
Sbjct: 474 GLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEA 533

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
             +  +++     PD VT+TS+I     N   R+
Sbjct: 534 SELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRK 567



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 142/296 (47%), Gaps = 30/296 (10%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
            LSL + + L G  P   TYN  I   CK+GR+S     L  +L +   PD V++ +LI 
Sbjct: 323 ALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIY 382

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
             C    +M+A  LF +LR       + TYNTL++GLCR G   VA  L  EM N     
Sbjct: 383 GYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINE---- 438

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN--- 285
           G+   PD +TY+ +++G CK            M S S   +   +F  +  + L L+   
Sbjct: 439 GIA--PDIVTYTILVNGSCK------------MGSLSMAQE---FFDEMLHEGLELDSYA 481

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +   I G  K+     A  L + +   G  P+++ YN+++ GLC  G ++E         
Sbjct: 482 YATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASE------ 535

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L +++ S G+ PD  TY  +I+   + GR+  G  IF  +L    TP  VT+T LI
Sbjct: 536 LLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLI 591



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 141/315 (44%), Gaps = 26/315 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+N L     +  +      LF  L    LFP   TYN L++  C+ G +     +
Sbjct: 372 PDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQL 431

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++     PD VT+T L+   C    +  A   F ++   G ELD + Y T I G  +
Sbjct: 432 KVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELK 491

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            G T  A +L EEM A G         PD I Y+ ++DGLCK       LG    AS   
Sbjct: 492 LGDTSRAFSLQEEMLAKG-------FPPDLIIYNVVVDGLCK-------LGNLEEAS-EL 536

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L KM     +       + +  +I    +  +L+  RE+F  +   GL P+VVTY +LI 
Sbjct: 537 LQKMVSDGVIPDY----VTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIH 592

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G    G++      E  F+ F  +   G+ P++ TYN LIN  CK+ R+   +  F  ++
Sbjct: 593 GHAGKGRL------ERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMV 646

Query: 387 PSCFTPDAVTFTSLI 401
                P+  ++T LI
Sbjct: 647 EKGIFPNKYSYTILI 661



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 166/385 (43%), Gaps = 59/385 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL + + M+ ++ + P V ++N     L K       +     +    L PD  +YN L
Sbjct: 322 EALSLQEEMV-LKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTL 380

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  +C++G +   F++   +      P  VT+ +L+  LC +  +  A  L  ++   G 
Sbjct: 381 IYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI 440

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG-------VVCE----------- 233
             D+ TY  L+NG C+ G   +A   F+EM +   E         +V E           
Sbjct: 441 APDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFS 500

Query: 234 -----------PDAITYSTIIDGLCK----EAGSA------------NFLGFSCMASFSA 266
                      PD I Y+ ++DGLCK    E  S             +++ ++ +     
Sbjct: 501 LQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHL 560

Query: 267 LN------KMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            N      +  FY  L + +    + +  LI G     +L+ A   F  +   G++PNV+
Sbjct: 561 ENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVI 620

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TYN LI GLC   +MD+  ++      F  +   G+FP+ Y+Y ILIN  C +G      
Sbjct: 621 TYNSLINGLCKVRRMDQAYNF------FAEMVEKGIFPNKYSYTILINENCNMGNWQEAL 674

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            ++ ++L     PD+ T ++L+K L
Sbjct: 675 SLYKQMLDRGVQPDSCTHSALLKQL 699



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 35/296 (11%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           ++LI  + K   V     V  ++++S  +PD      +++ L  +  + +A  ++  +  
Sbjct: 168 DLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGE 227

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           FG +  + TYNTL++  C+ G     L+L  EM          C P+ +TY+ +I+GL K
Sbjct: 228 FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRG------CAPNDVTYNVLINGLSK 281

Query: 249 EAGSANFLGFSCMASFSALNKMAF-YFPLVR--------VQCLCLN-------------- 285
           +       G       + L   A+ Y PL+          + L L               
Sbjct: 282 KGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVAT 341

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +   I GLCK+ ++  A +    +    L+P+VV+YN LI G C  G + +       FL
Sbjct: 342 YNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKA------FL 395

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LF  L S  LFP + TYN L++  C+ G +     +   ++     PD VT+T L+
Sbjct: 396 LFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILV 451



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
            +F  +   GL P   TY +LI+     GR+   F+    +      P+ +T+ SLI  L
Sbjct: 570 EIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGL 629

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C   R+ +A   F ++   G   + ++Y  LIN  C  G+   AL+L+++M +       
Sbjct: 630 CKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRG----- 684

Query: 231 VCEPDAITYSTIIDGLCKE 249
             +PD+ T+S ++  L K+
Sbjct: 685 -VQPDSCTHSALLKQLGKD 702



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L   L K +  D   + F  +   G+FP++Y+Y ILIN  C MG       +
Sbjct: 617 PNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSL 676

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
             ++L     PD+ T ++L+K L  + ++     L
Sbjct: 677 YKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVRQL 711



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +F  + ++ L P+V   N ++R L +   M +         +++ +   G+ P + TYN 
Sbjct: 186 VFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVE------VYRTMGEFGIKPTIVTYNT 239

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           L++ +CK G+V  G  +   +      P+ VT+  LI  L     F Q 
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQA 288


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 173/412 (41%), Gaps = 99/412 (24%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD++   +  +  V ++N     LAK          F+++   G  PD +TY+I++   
Sbjct: 24  LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGL 83

Query: 136 CKMGRVSHGFVVLGRILRSCF------------------------------------TPD 159
           CK G +     +LG++  S                                       PD
Sbjct: 84  CKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPD 143

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            VTF SL+K LC+  R+ EA  LF  +   GCE +V +Y+TL++GLC+ G    A  L+E
Sbjct: 144 VVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWE 203

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC------MASFSALNKMAFY 273
           EM   +      C PD + Y++ + GLCK    AN +  +C      +   S  + +AF 
Sbjct: 204 EMVEKS------CVPDLVAYTSFVTGLCK----ANRVAEACDCCRKMVTKGSKADAVAFS 253

Query: 274 FPL---------VRVQCLCLNFLC---LIDGLCKISKLKIAR------ELFQSLPRA--- 312
             +            Q   +  LC   ++D  CK  +  I+R      ELF +L  A   
Sbjct: 254 TVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCK 313

Query: 313 ------GLM--------------PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
                 G++              PN+ TYNI++  LC   Q+DE +       L   + +
Sbjct: 314 SKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQE------LVNEMAN 367

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            GL PD+ TY+ L++  CK+G++     +   +      PD+ T  S++  L
Sbjct: 368 YGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNAL 419



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 157/375 (41%), Gaps = 51/375 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F  M       P V +FN L   L   +       LF+ +   G  P+  +Y+ 
Sbjct: 125 DDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYST 184

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK GR+     +   ++     PD V +TS +  LC  +R+ EA     K+   G
Sbjct: 185 LLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKG 244

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE-----------PDAITY 239
            + D   ++T+I  LC+ GH   A N   E    +G     C+           P A  +
Sbjct: 245 SKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELF 304

Query: 240 STIIDGLCKEAGSAN-FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           +T+I  +CK     +  L F  M S        FY P          +  ++D LCK  +
Sbjct: 305 NTLIHAVCKSKRLPDGVLLFQRMKSMK-----EFYCPPN-----LETYNIMVDNLCKAKQ 354

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD------ETKHYETVF-------- 344
           L  A+EL   +   GL P+VVTY+ L+ GLC  G++D      E    E VF        
Sbjct: 355 LDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDAS 414

Query: 345 ---------------LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                             + + + G  PDL TYN L++  CK GR+        +++ + 
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 390 FTPDAVTFTSLIKIL 404
            TPD  ++T +I  L
Sbjct: 475 CTPDVFSYTIIITAL 489



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 159/340 (46%), Gaps = 37/340 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF---PDRYT 127
           +EA   F+ M++ R   P    FN L   + K+K     + LF+R+     F   P+  T
Sbjct: 283 DEACKTFEEMIS-RNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLET 341

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           YNI+++  CK  ++     ++  +     +PD VT+++L+  LC   ++  A  L  ++ 
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMS 401

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGL 246
             G   D FT  +++N L + G    AL+  E M A G+        PD +TY+T++DGL
Sbjct: 402 KEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGS-------TPDLVTYNTLLDGL 454

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARE 304
           CK AG  +               + F   +V  +C     ++  +I  LC+  +   A  
Sbjct: 455 CK-AGRID-------------EAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHA 500

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +FQ + + G++P+ V Y+ L+ GL  +G  D         L  + L ++   PD   + +
Sbjct: 501 IFQEMVKRGVLPDTVLYHSLLDGLARNGLED---------LALELLKTSLCKPDFVMHKM 551

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +++  CK G+      +  R+  + F  DA T+ ++++ L
Sbjct: 552 VVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGL 591



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 129/273 (47%), Gaps = 30/273 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + + M N   S P V +++ L   L K    D    L + ++  G+FPD +T   
Sbjct: 356 DEAQELVNEMANYGLS-PDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDAS 414

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++N   K G+V +    L  +     TPD VT+ +L+  LC   RI EA     K+    
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
           C  DVF+Y  +I  LCR+G    A  +F+EM     + GV+  PD + Y +++DGL +  
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMV----KRGVL--PDTVLYHSLLDGLARNG 528

Query: 249 -EAGSANFLGFS-CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            E  +   L  S C   F  ++KM                  ++DGLCK  K + A E+ 
Sbjct: 529 LEDLALELLKTSLCKPDF-VMHKM------------------VVDGLCKAGKAEDACEVV 569

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
           + +  AG   +  TY  ++RGL   G++D+ + 
Sbjct: 570 ERMADAGFPADAFTYINVVRGLRKLGKVDKARQ 602



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/175 (18%), Positives = 64/175 (36%), Gaps = 32/175 (18%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R S P + ++N L   L K    D  ++   ++      PD ++Y I+I   C+ G+
Sbjct: 435 MKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQ 494

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSL--------------------------------IK 168
            +    +   +++    PD V + SL                                + 
Sbjct: 495 AAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVD 554

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
            LC   +  +A  +  ++   G   D FTY  ++ GL + G    A  L ++ + 
Sbjct: 555 GLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASE 609



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 11/109 (10%)

Query: 296 ISKLKIARELFQSLPRA-GLMPNVVTYNILIRGLC--NDGQMDETKHYETVFLLFKRLNS 352
           + K+     LF  L R  G   +V TYN  +  L   N GQ+     YE     F+++  
Sbjct: 15  LGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQL----AYEK----FQQMQR 66

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G  PD +TY+I++   CK G +     + G++  S    + +T++ +I
Sbjct: 67  RGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVI 115


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 147/310 (47%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +   + TLI+G C+ G   
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+                 ++ +  
Sbjct: 265 LAMEIYKQMLSQS------LLPDLITYNTLIYGLCKK------------GDLKQVHHLID 306

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 307 EMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEG 366

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + + GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 367 RSVDAEK-------MLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 419

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 420 PSVVTYNVLM 429



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 132/295 (44%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 161 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 219

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ V FT+LI   C   R+  A  ++ ++      
Sbjct: 220 NGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G      +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKG------LKPDKITYTTLIDGCCKEG-- 331

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 332 ------DLDTAFEHRKQMI----QENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNV 381

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 382 GLKPDARTYTMIINEFCKKGDVWKGSK------LLKEMQRDGHVPSVVTYNVLMN 430



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 28/304 (9%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L K K++  V   +K +   G     Y +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V++ +L+        + E   L + +   G + DV+TY+ LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 236

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM       G+V  P+ + ++T+IDG CK  G  +               M  Y  ++  
Sbjct: 237 EMLVK----GLV--PNGVIFTTLIDGHCKN-GRVDL-------------AMEIYKQMLSQ 276

Query: 280 QCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
             L   + +  LI GLCK   LK    L   +   GL P+ +TY  LI G C +G +D  
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLD-- 334

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
               T F   K++    +  D   Y  LI+  C+ GR      +   +L     PDA T+
Sbjct: 335 ----TAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTY 390

Query: 398 TSLI 401
           T +I
Sbjct: 391 TMII 394



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+   +  LI+  CK GRV     
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAME 268

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L     PD +T+ +LI  LC +  + +   L  ++ + G + D  TY TLI+G C
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCC 328

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    ++M   N         D + Y+ +I GLC+E  S +            
Sbjct: 329 KEGDLDTAFEHRKQMIQEN------IRLDEVAYTALISGLCQEGRSVD------------ 370

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G +P+VVTYN+L+ 
Sbjct: 371 AEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430

Query: 327 G 327
           G
Sbjct: 431 G 431



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 56/124 (45%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++M+  +P   ++  L     K    DT     K++    +  D   Y  LI+  C+ GR
Sbjct: 308 MSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGR 367

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +L  +L     PDA T+T +I + C +  + + + L  +++  G    V TYN 
Sbjct: 368 SVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNV 427

Query: 201 LING 204
           L+NG
Sbjct: 428 LMNG 431



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 113 VLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 166

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 219


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 32/313 (10%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K       LS+F  +   GL P   ++N L+N + ++G +  GF +   + 
Sbjct: 143 FNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 202

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 262

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+                 L +   
Sbjct: 263 LAMEVYKQMLSQS------LSPDLITYNTLIYGLCKKGD---------------LKQAQD 301

Query: 273 YFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
               +R++ L    +++  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC
Sbjct: 302 LIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLC 361

Query: 330 NDGQ-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
            +G+ +D  K       + + + S GL PD  TY ++IN FCK G V +G  +   +   
Sbjct: 362 QEGRSIDAEK-------MLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRD 414

Query: 389 CFTPDAVTFTSLI 401
              P  VT+  L+
Sbjct: 415 GHVPSVVTYNVLM 427



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 139/306 (45%), Gaps = 30/306 (9%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGDI       AL VFD  +     RP V SFN L     +    D    L   ++ +G+
Sbjct: 153 EGDIRV-----ALSVFD-AITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGV 206

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD YTY++LIN  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  
Sbjct: 207 QPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 266

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           ++ ++       D+ TYNTLI GLC+ G    A +L +EM           +PD I+Y+T
Sbjct: 267 VYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKG------LKPDKISYTT 320

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +IDG CKE             +F    +M        ++   + +  LI GLC+  +   
Sbjct: 321 LIDGCCKEG--------DLETAFEHRKRMI----QENIRLDDVAYTALISGLCQEGRSID 368

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A ++ + +   GL P+  TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 369 AEKMLREMLSVGLRPDTGTYTMIINEFCKKGDV------WTGSKLLKEMQRDGHVPSVVT 422

Query: 362 YNILIN 367
           YN+L+N
Sbjct: 423 YNVLMN 428



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ V+  ML+   S P + ++N L   L K         L   + + GL PD+ +Y  LI
Sbjct: 264 AMEVYKQMLSQSLS-PDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLI 322

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E R ++A  +  ++   G  
Sbjct: 323 DGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLR 382

Query: 193 LD-----------------------------------VFTYNTLING 204
            D                                   V TYN L+NG
Sbjct: 383 PDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 96/244 (39%), Gaps = 45/244 (18%)

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVCEPDAITYSTI--IDGL 246
           + +Y T+I+ LC       A NL + + +  G+      F  + E      S I    GL
Sbjct: 17  LHSYCTMIHFLCTHQMLPEAKNLIQVVVSRKGKNSASAVFAAILETQGTQRSDIYVFSGL 76

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
                 + FL    +  +    +  F+ P    + +       ++ L K+   K+    +
Sbjct: 77  ITAYLESGFLR-DAIECYRLTREHKFWVPFDTCRKV-------LEHLMKLKYFKLVWXFY 128

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQM-------DETKHY------------------- 340
           + +   G   ++  +NIL+   C +G +       D    +                   
Sbjct: 129 KEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRL 188

Query: 341 ---ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
              +  F L   ++++G+ PD+YTY++LIN  CK  ++     +F  +L     P+ VTF
Sbjct: 189 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTF 248

Query: 398 TSLI 401
           T+LI
Sbjct: 249 TTLI 252


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 143/317 (45%), Gaps = 38/317 (11%)

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           LF+ + + G+ PD  +Y +++  +CK+G +      L  +L   F  D  TFT +I    
Sbjct: 192 LFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFS 251

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
            +     A   F +L   G E ++  +  +I GLC+ G    A  + EEM  G G     
Sbjct: 252 GKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMV-GKG----- 305

Query: 232 CEPDAITYSTIIDGLCK-----------------EAGSANFLGFSCMAS----FSALNKM 270
            +P+  T++++IDGLCK                 E    N L ++ M S       LN+ 
Sbjct: 306 WKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRA 365

Query: 271 AFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                 ++ Q L  N   +  LIDG CK    + A +L   +   G  PN+ TYN ++ G
Sbjct: 366 EMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNG 425

Query: 328 LCNDGQMDET-KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           LC  G++ E  K  E  F         GL PD +TYNIL++  CK   +     +F ++L
Sbjct: 426 LCKRGRVQEAYKMLEDGF-------QNGLKPDKFTYNILMSEHCKQENIRQALALFNKML 478

Query: 387 PSCFTPDAVTFTSLIKI 403
                PD  ++T+LI +
Sbjct: 479 KIGIQPDIHSYTTLIAV 495



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 145/302 (48%), Gaps = 30/302 (9%)

Query: 104 KHYDT-VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
           K Y T  L  F+RL   GL P+   +  +I   CK G +   F +L  ++   + P+  T
Sbjct: 253 KGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYT 312

Query: 163 FTSLIKDLCAESRIMEAAALFTKL-RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            TSLI  LC +    +A  LF KL R    + +V TY  +I+G CR       LN  E +
Sbjct: 313 HTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRED----KLNRAEML 368

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF--YFPLVRV 279
            +   E G+V  P+  TY+T+IDG CK   + NF       ++  +N M+   + P    
Sbjct: 369 LSRMKEQGLV--PNTNTYTTLIDGHCK---AGNF-----ERAYDLMNLMSSEGFSP---- 414

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
             LC  +  +++GLCK  +++ A ++ +   + GL P+  TYNIL+   C    + +   
Sbjct: 415 -NLC-TYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQ--- 469

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
                 LF ++   G+ PD+++Y  LI  FC+  R+    + F   +     P   T+TS
Sbjct: 470 ---ALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTS 526

Query: 400 LI 401
           +I
Sbjct: 527 MI 528



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 130/303 (42%), Gaps = 28/303 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  +F  ++     +P V ++  +     +    +    L  R+   GL P+  TY  
Sbjct: 327 EKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTT 386

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G     + ++  +    F+P+  T+ +++  LC   R+ EA  +       G
Sbjct: 387 LIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNG 446

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D FTYN L++  C+  +   AL LF +M        +  +PD  +Y+T+I   C+E 
Sbjct: 447 LKPDKFTYNILMSEHCKQENIRQALALFNKM------LKIGIQPDIHSYTTLIAVFCRE- 499

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN--FLCLIDGLCKISKLKIARELFQS 308
              N +  S M          F+   VR+  +  N  +  +I G C+   L +A + F  
Sbjct: 500 ---NRMKESEM----------FFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHR 546

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   G  P+ +TY  +I GLC   + DE +       L+  +   GL P   T   L   
Sbjct: 547 LSDHGCAPDSITYGAIISGLCKQSKRDEARS------LYDSMIEKGLVPCEVTRITLAYE 600

Query: 369 FCK 371
           +CK
Sbjct: 601 YCK 603



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 160/365 (43%), Gaps = 42/365 (11%)

Query: 60  SGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT 119
           SG+G  T      AL  F  +++M    P + +F  +   L K         + + +   
Sbjct: 251 SGKGYTT-----RALWYFRRLVDM-GLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGK 304

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIME 178
           G  P+ YT+  LI+  CK G     F +  +++RS    P+ +T+T++I   C E ++  
Sbjct: 305 GWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNR 364

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A  L ++++  G   +  TY TLI+G C+ G+   A +L   M++          P+  T
Sbjct: 365 AEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEG------FSPNLCT 418

Query: 239 YSTIIDGLCK-----------EAGSANFLG-----FSCMASFSALNK-----MAFYFPLV 277
           Y+ I++GLCK           E G  N L      ++ + S     +     +A +  ++
Sbjct: 419 YNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKML 478

Query: 278 RV--QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
           ++  Q    ++  LI   C+ +++K +   F+   R G++P   TY  +I G C +G + 
Sbjct: 479 KIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLT 538

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
               +      F RL+  G  PD  TY  +I+  CK  +      ++  ++     P  V
Sbjct: 539 LAMKF------FHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEV 592

Query: 396 TFTSL 400
           T  +L
Sbjct: 593 TRITL 597



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 118/272 (43%), Gaps = 25/272 (9%)

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++  F ++GR+     ++  +      P+  T   +IK       +  A  LF ++ V G
Sbjct: 141 MVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRG 200

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D  +Y  ++   C+ G+ + A      M     E G V   D  T++ II     + 
Sbjct: 201 VQPDSISYRVMVVMYCKIGNILEADKWLSVML----ERGFVV--DNATFTLIISRFSGKG 254

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            +   L +     F  L  M     L+       NF C+I+GLCK   +K A E+ + + 
Sbjct: 255 YTTRALWY-----FRRLVDMGLEPNLI-------NFTCMIEGLCKRGSIKQAFEMLEEMV 302

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL-NSTGLFPDLYTYNILINCF 369
             G  PNV T+  LI GLC  G        E  F LF +L  S    P++ TY  +I+ +
Sbjct: 303 GKGWKPNVYTHTSLIDGLCKKGWT------EKAFRLFLKLVRSENHKPNVLTYTAMISGY 356

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           C+  +++   ++  R+      P+  T+T+LI
Sbjct: 357 CREDKLNRAEMLLSRMKEQGLVPNTNTYTTLI 388



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%)

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
           C    C+++   ++ +LK A E+   +   GL+PN  T N +I+     G ++  +    
Sbjct: 135 CEVMRCMVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAE---- 190

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             LLF+ +   G+ PD  +Y +++  +CKIG +         +L   F  D  TFT +I
Sbjct: 191 --LLFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLII 247


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 142/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVX 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A    + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYV 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 129/292 (44%), Gaps = 31/292 (10%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGSCKEGD- 326

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSL 309
                         L     Y   +  + + L+   +  LI GLC+  +   A ++ + +
Sbjct: 327 --------------LETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
              GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDV------WTGSKLLKEMQRDGYVPSVVT 418


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 139/308 (45%), Gaps = 18/308 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     Y+   S+ + +   G  PD  TY+ ++N  C   ++   F++   + R     
Sbjct: 416 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA 475

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T ++   C    I +A   F ++R  GC  +V TY  LI+   +      A  LF
Sbjct: 476 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 535

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG--FSCMASFSALNKMAFYFPL 276
           E M +        C P+ +TYS +IDG CK AG        F  M     +  +  YF  
Sbjct: 536 ETMLSEG------CLPNIVTYSALIDGHCK-AGQVEKACQIFERMCGSKDVPDVDMYFKQ 588

Query: 277 VRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
                   N +    L+DG CK  +++ AR+L  ++   G  PN + Y+ LI GLC  G+
Sbjct: 589 YDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGK 648

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           +DE +  +T       ++  G    LYTY+ LI+ + K+ R      +  ++L +   P+
Sbjct: 649 LDEAQEVKT------EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 702

Query: 394 AVTFTSLI 401
            V +T +I
Sbjct: 703 VVIYTEMI 710



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 141/360 (39%), Gaps = 76/360 (21%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP  +++N L     K    D+   + + ++L  L  D +T        CK+G+      
Sbjct: 191 RPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALT 250

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY-------- 198
           +   +    F PD V +T LI  LC  S   EA     ++R   C  +V TY        
Sbjct: 251 L---VETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCL 307

Query: 199 ---------------------------NTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
                                      N+L++  C +G    A  L ++M        V 
Sbjct: 308 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKM--------VK 359

Query: 232 CE--PDAITYSTIIDGLCKEAGSANF-------LGFSCM-ASFSALNKMAFYFPLVRVQC 281
           C   P  + Y+ +I  +C +  S NF         +S M A+   LNK            
Sbjct: 360 CGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNK------------ 407

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             +N       LC   K + A  + + +   G +P+  TY+ ++  LCN  +M      E
Sbjct: 408 --INVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM------E 459

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             FLLF+ +   GL  D+YTY I+++ FCK G +      F  +     TP+ VT+T+LI
Sbjct: 460 LAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALI 519



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 158/383 (41%), Gaps = 79/383 (20%)

Query: 76  VFDYMLNMRPSR--PPVTSFNILF-GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
             D++  MR +   P V +++ L  GCL K K       +   + + G +P    +N L+
Sbjct: 280 AMDFLNRMRATSCLPNVVTYSTLLCGCLNK-KQLGRCKRVLNMMMMEGCYPSPKIFNSLV 338

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE----------------SRI 176
           + +C  G  S+ + +L ++++    P  V +  LI  +C +                S +
Sbjct: 339 HAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEM 398

Query: 177 MEAAALFTKLRVF-------------------------GCELDVFTYNTLINGLCRTGHT 211
           + A  +  K+ V                          G   D  TY+ ++N LC     
Sbjct: 399 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 458

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
            +A  LFEEM  G    G+V   D  TY+ ++D  CK AG               + +  
Sbjct: 459 ELAFLLFEEMKRG----GLVA--DVYTYTIMVDSFCK-AG--------------LIEQAR 497

Query: 272 FYFPLVR-VQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
            +F  +R V C    + +  LI    K  K+  A ELF+++   G +PN+VTY+ LI G 
Sbjct: 498 KWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGH 557

Query: 329 CNDGQMDE----------TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           C  GQ+++          +K    V + FK+ +     P++ TY  L++ FCK  RV   
Sbjct: 558 CKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEA 617

Query: 379 FVIFGRILPSCFTPDAVTFTSLI 401
             +   +      P+ + + +LI
Sbjct: 618 RKLLDAMSMEGCEPNQIVYDALI 640



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 139/358 (38%), Gaps = 59/358 (16%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
            RP V ++  L     K+   +    L   +++ G  P++  Y+ LI+  CK+G++    
Sbjct: 594 ERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ 653

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            V   +    F     T++SLI       R   A+ + +K+    C  +V  Y  +I+GL
Sbjct: 654 EVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGL 713

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G T  A  L + M          C+P+ +TY+ +IDG                  F 
Sbjct: 714 CKVGKTDEAYKLMQMMEEKG------CQPNVVTYTAMIDG------------------FG 749

Query: 266 ALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            + K+     L+       V    + +  LID  CK   L +A  L + + +     +  
Sbjct: 750 MIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTA 809

Query: 320 TYNILIR----------GLCNDGQMDETKHYETVFLLF-------KRLN----------- 351
            Y  +I           GL ++   D+T  + +V+ L        +RL            
Sbjct: 810 GYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT 869

Query: 352 -STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            S  L     TYN LI   C   +V + F +F  +      P+  +F SLIK L  NS
Sbjct: 870 FSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNS 927



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 134/338 (39%), Gaps = 47/338 (13%)

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
           +F  +  +K    V   FK+ +     P+  TY  L++ FCK  RV     +L  +    
Sbjct: 569 IFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG 628

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             P+ + + +LI  LC   ++ EA  + T++   G    ++TY++LI+   +     +A 
Sbjct: 629 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 688

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            +  +M   +      C P+ + Y+ +IDGLCK   +        M              
Sbjct: 689 KVLSKMLENS------CAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG--------- 733

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
               Q   + +  +IDG   I K++   EL + +   G+ PN VTY +LI   C +G +D
Sbjct: 734 ---CQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALD 790

Query: 336 ----------------ETKHYETVFLLFKR--LNSTGLF---------PDLYTYNILINC 368
                            T  Y  V   F +  + S GL          P L  Y +LI+ 
Sbjct: 791 VAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDN 850

Query: 369 FCKIGRVSSGFVIFGRI--LPSCFTPDAVTFTSLIKIL 404
             K  R+     +   +    +     + T+ SLI+ L
Sbjct: 851 LIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESL 888



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 115/302 (38%), Gaps = 38/302 (12%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N+L+   C+ G  S     LGR+    F P   T+  LI+      R+  A+ +  ++ +
Sbjct: 163 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 222

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
               +D FT       LC+ G    AL L E       E  V   PD + Y+ +I GLC+
Sbjct: 223 ANLRMDGFTLRCFAYSLCKVGKWREALTLVET------ENFV---PDTVFYTKLISGLCE 273

Query: 249 EAGSANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLN---------------------- 285
            +     + F + M + S L  +  Y  L+   C CLN                      
Sbjct: 274 ASLFEEAMDFLNRMRATSCLPNVVTYSTLL---CGCLNKKQLGRCKRVLNMMMMEGCYPS 330

Query: 286 ---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
              F  L+   C       A +L + + + G MP  V YNILI  +C D         + 
Sbjct: 331 PKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDL 390

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
               +  + + G+  +    +    C C  G+    F +   ++   F PD  T++ ++ 
Sbjct: 391 AEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLN 450

Query: 403 IL 404
            L
Sbjct: 451 YL 452



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 18/223 (8%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  +  +P V ++  +          +T L L +R+   G+ P+  TY +LI+  CK G
Sbjct: 728 MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNG 787

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            +     +L  + ++ +      +  +I+    E   +E+  L  ++        +  Y 
Sbjct: 788 ALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDEIGQDDTAPFLSVYR 845

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LI+ L +     +AL L EE+A     F       + TY+++I+ LC        L   
Sbjct: 846 LLIDNLIKAQRLEMALRLLEEVAT----FSATLVDYSSTYNSLIESLC--------LANK 893

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
              +F   ++M     +  +Q  C     LI GL + SK+  A
Sbjct: 894 VETAFQLFSEMTKKGVIPEMQSFC----SLIKGLFRNSKISEA 932



 Score = 38.9 bits (89), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 74/201 (36%), Gaps = 36/201 (17%)

Query: 2   YPTYKI-------NGRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLK 54
           Y TY++       NG +  A  L  +        +  +PT TA  R  +      E F K
Sbjct: 773 YVTYRVLIDHCCKNGALDVAHNLLEEM------KQTHWPTHTAGYRKVI------EGFNK 820

Query: 55  ERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFK 114
           E  +S G  D                +    + P ++ + +L   L K +  +  L L +
Sbjct: 821 EFIESLGLLD---------------EIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLE 865

Query: 115 RLNL--TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
            +      L     TYN LI   C   +V   F +   + +    P+  +F SLIK L  
Sbjct: 866 EVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFR 925

Query: 173 ESRIMEAAALFTKLRVFGCEL 193
            S+I EA  L   +    C L
Sbjct: 926 NSKISEALLLLDFISHMVCPL 946


>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1385

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 160/363 (44%), Gaps = 47/363 (12%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           F  M+  R S P V +FNIL   L +   + +   L ++++ TG FP   TYN L+N +C
Sbjct: 167 FKEMIANRVS-PNVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWYC 225

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           K GR      ++  +       D  T+  LI DLC +SR  +   +  ++R      +  
Sbjct: 226 KKGRYKAASELIDAMASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEI 285

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE--PDAITYSTIIDGLCKEAGSAN 254
           TYNTLINGL + G   VA  +FEEM+        +C   P+++TY+T+I G C       
Sbjct: 286 TYNTLINGLVKEGKIGVATKVFEEMS--------LCNLLPNSVTYNTLIFGHCSNGNIEE 337

Query: 255 FL-----------------------GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
            L                       G S  A F  ++ +     +  V+   +++  +ID
Sbjct: 338 ALRLCDVMVSHGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMID 397

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL------ 345
           GLCK   L+ A +L   + +  + P++VT+++L+ G    G +     + T+        
Sbjct: 398 GLCKNGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIYNYCKMG 457

Query: 346 -------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                   +  +N +G   D +T ++L+  FC+ GR+         +      P +VTF 
Sbjct: 458 NLKEALNAYAVMNQSGHVSDHFTSSVLVASFCRCGRLEEAEYFVDHMSRMGLAPSSVTFD 517

Query: 399 SLI 401
            +I
Sbjct: 518 CII 520



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 139/322 (43%), Gaps = 24/322 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++  R   P V + N++ G L K +  D   S FK +    + P+  T+NIL+N  C+ G
Sbjct: 134 LMGFRGFSPSVFTCNMVLGSLVKDREVDLFWSFFKEMIANRVSPNVATFNILLNALCERG 193

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           +     V+L ++  +   P AVT+ +L+   C + R   A+ L   +   G   DV TYN
Sbjct: 194 KFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCKKGRYKAASELIDAMASKGIAADVCTYN 253

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LI+ LCR   +     +   M         +  P+ ITY+T+I+GL KE          
Sbjct: 254 VLIDDLCRKSRSAKGYLILRRMRKN------MVYPNEITYNTLINGLVKE---------- 297

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
                    K+     L  +    + +  LI G C    ++ A  L   +   GL PN V
Sbjct: 298 --GKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHGLRPNEV 355

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY  L+ G+    Q      +  V  + +R+   G+     +Y  +I+  CK G +    
Sbjct: 356 TYGALLNGISKHAQ------FGLVSSVLERMRMDGVRVGHISYTTMIDGLCKNGLLEEAV 409

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +   +L    +PD VTF+ L+
Sbjct: 410 QLLDDMLKVSVSPDIVTFSVLV 431



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 146/357 (40%), Gaps = 56/357 (15%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   L K         +F+ ++L  L P+  TYN LI   C  G +     +
Sbjct: 282 PNEITYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRL 341

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++     P+ VT+ +L+  +   ++    +++  ++R+ G  +   +Y T+I+GLC+
Sbjct: 342 CDVMVSHGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCK 401

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC------- 260
            G    A+ L ++M        V   PD +T+S +++G  K     N +  S        
Sbjct: 402 NGLLEEAVQLLDDM------LKVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIYNYCK 455

Query: 261 MASF-SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
           M +   ALN  A       V     + + L+   C+  +L+ A      + R GL P+ V
Sbjct: 456 MGNLKEALNAYAVMNQSGHVSDHFTSSV-LVASFCRCGRLEEAEYFVDHMSRMGLAPSSV 514

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY----------------- 362
           T++ +I    N G  D  K     F +F ++NS G  P  +TY                 
Sbjct: 515 TFDCIIDTYGNSG--DALK----AFSVFDKMNSLGHLPSQFTYEGLLKGLLIGGHINEAK 568

Query: 363 ------------------NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                             N ++    + G +S+   +   ++ + F PD+ T+TSLI
Sbjct: 569 IFMHRPSSIPYAIGSTFYNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSFTYTSLI 625



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 142/330 (43%), Gaps = 27/330 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +F+ MLN    +P   +FN+L    ++      V  +   +    L  +  TYNIL+
Sbjct: 673 ALYMFEDMLN-EGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILL 731

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + + K   ++    +   ++   F PD +T+ SLI   C    +  A     K+ V G +
Sbjct: 732 HGYSKRHGMARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEGFK 791

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           +D FT N L++ LC      +A +L +++       GV   P+  TY+++ +G  +   +
Sbjct: 792 VDCFTLNVLVSKLCERNEIKMAFDLVKQL----NMLGVT--PNVDTYNSLFNGFVR---T 842

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
            +F    C+      N    Y P       C  F  LI G+C++  +K A EL   +   
Sbjct: 843 CSFDEARCILHALLENG---YAP------TCKQFTTLIRGMCRMGNVKGAMELQDEMKIL 893

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+    V  + +IRGL    + DE      + L  +      + P + T+  L++ +CK 
Sbjct: 894 GVSSQGVAMSAIIRGLARSRKTDEATRILGIMLEMQ------IIPTVATFTTLMHTYCKE 947

Query: 373 GRVSSGFVIFGRILPSCFTP-DAVTFTSLI 401
           G V+    +   ++  C    D   +  LI
Sbjct: 948 GNVAKALELRS-VMEQCHVKLDVAAYNVLI 976



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 153/387 (39%), Gaps = 84/387 (21%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-------------------HYDTVLSL 112
           EA+ + D ML +  S P + +F++L     KT                    +    L+ 
Sbjct: 407 EAVQLLDDMLKVSVS-PDIVTFSVLVNGFLKTGLVPNRVLHSTLIYNYCKMGNLKEALNA 465

Query: 113 FKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
           +  +N +G   D +T ++L+  FC+ GR+      +  + R    P +VTF  +I     
Sbjct: 466 YAVMNQSGHVSDHFTSSVLVASFCRCGRLEEAEYFVDHMSRMGLAPSSVTFDCIIDTYGN 525

Query: 173 ESRIMEAAALFTKLRVFGCELDVFT----------------------------------- 197
               ++A ++F K+   G     FT                                   
Sbjct: 526 SGDALKAFSVFDKMNSLGHLPSQFTYEGLLKGLLIGGHINEAKIFMHRPSSIPYAIGSTF 585

Query: 198 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
           YNT++    R+G+   A+ L +EM   N        PD+ TY+++I GLC++      L 
Sbjct: 586 YNTMLTLTSRSGNLSNAVALLDEMVMNN------FVPDSFTYTSLIAGLCRKGKMVPALL 639

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGL 314
            S  A    L              L  N   +  L+DGL K    K A  +F+ +   G+
Sbjct: 640 LSGRAIEKGL--------------LSPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNEGV 685

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            P+ + +N+L+      G+M +         +   + S  L  +L TYNIL++ + K   
Sbjct: 686 QPDAIAFNVLLDRYSRKGKMSKVND------ILSTMRSRSLCFNLATYNILLHGYSKRHG 739

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++    ++  ++   F PD +T+ SLI
Sbjct: 740 MARCSKLYNEMIIHGFAPDRLTWHSLI 766



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 131/338 (38%), Gaps = 49/338 (14%)

Query: 56   RCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKR 115
            + K S   DI S   + +LC              + ++NIL    +K         L+  
Sbjct: 702  KGKMSKVNDILSTMRSRSLCF------------NLATYNILLHGYSKRHGMARCSKLYNE 749

Query: 116  LNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175
            + + G  PDR T++ LI  +CK G +      L +I    F  D  T   L+  LC  + 
Sbjct: 750  MIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEGFKVDCFTLNVLVSKLCERNE 809

Query: 176  IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE-MANGNGEFGVVCEP 234
            I  A  L  +L + G   +V TYN+L NG  RT     A  +    + NG         P
Sbjct: 810  IKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALLENGYA-------P 862

Query: 235  DAITYSTIIDGLCKEAGSANFL--------------GFSCMASFSALNKMAFYFPLVRVQ 280
                ++T+I G+C+       +              G +  A    L +        R+ 
Sbjct: 863  TCKQFTTLIRGMCRMGNVKGAMELQDEMKILGVSSQGVAMSAIIRGLARSRKTDEATRIL 922

Query: 281  CLCLN---------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
             + L          F  L+   CK   +  A EL   + +  +  +V  YN+LI GLC D
Sbjct: 923  GIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRSVMEQCHVKLDVAAYNVLISGLCAD 982

Query: 332  GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            G +      +  F L++ +    ++P+   Y +LI+ F
Sbjct: 983  GDI------QAAFKLYEEMEQRDIWPNTSIYIVLIDSF 1014



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/383 (21%), Positives = 150/383 (39%), Gaps = 58/383 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA    D+M  M  + P   +F+ +      +       S+F ++N  G  P ++TY  L
Sbjct: 496 EAEYFVDHMSRMGLA-PSSVTFDCIIDTYGNSGDALKAFSVFDKMNSLGHLPSQFTYEGL 554

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +      G ++   + + R     +   +  + +++        +  A AL  ++ +   
Sbjct: 555 LKGLLIGGHINEAKIFMHRPSSIPYAIGSTFYNTMLTLTSRSGNLSNAVALLDEMVMNNF 614

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D FTY +LI GLCR G  + AL     + +G      +  P+   Y++++DGL KE  
Sbjct: 615 VPDSFTYTSLIAGLCRKGKMVPAL-----LLSGRAIEKGLLSPNPAMYTSLVDGLLKEGH 669

Query: 252 SA----------------NFLGFSCM----ASFSALNKMAFYFPLVRVQCLCLN---FLC 288
           S                 + + F+ +    +    ++K+      +R + LC N   +  
Sbjct: 670 SKAALYMFEDMLNEGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNI 729

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD------------- 335
           L+ G  K   +    +L+  +   G  P+ +T++ LI G C  G +D             
Sbjct: 730 LLHGYSKRHGMARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEG 789

Query: 336 ----------------ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                           E    +  F L K+LN  G+ P++ TYN L N F +        
Sbjct: 790 FKVDCFTLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEAR 849

Query: 380 VIFGRILPSCFTPDAVTFTSLIK 402
            I   +L + + P    FT+LI+
Sbjct: 850 CILHALLENGYAPTCKQFTTLIR 872



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 113/260 (43%), Gaps = 26/260 (10%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           F+P   T   ++  L  +  +    + F ++       +V T+N L+N LC  G    A 
Sbjct: 140 FSPSVFTCNMVLGSLVKDREVDLFWSFFKEMIANRVSPNVATFNILLNALCERGKFKSAG 199

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            L  +M +  G F     P A+TY+T+++  CK+              + A +++     
Sbjct: 200 VLLRKM-DETGHF-----PTAVTYNTLLNWYCKKG------------RYKAASELIDAMA 241

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
              +      +  LID LC+ S+      + + + +  + PN +TYN LI GL  +G++ 
Sbjct: 242 SKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEITYNTLINGLVKEGKIG 301

Query: 336 -ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
             TK       +F+ ++   L P+  TYN LI   C  G +     +   ++     P+ 
Sbjct: 302 VATK-------VFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHGLRPNE 354

Query: 395 VTFTSLIKILEINSFFRQVA 414
           VT+ +L+  +  ++ F  V+
Sbjct: 355 VTYGALLNGISKHAQFGLVS 374


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 147/331 (44%), Gaps = 35/331 (10%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N L G L +    +    +++ ++ +G+  + YT NI++N  CK G++      L  +  
Sbjct: 194 NALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQE 253

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
               PD VT+ +LI    ++  + EA  L   +   G    V+TYNT+INGLC+ G    
Sbjct: 254 KGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYER 313

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA----------------NFLG 257
           A  +F EM            PD+ TY +++   CK+  +                 + + 
Sbjct: 314 AKEVFAEMLRSG------LSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVC 367

Query: 258 FSCMASF----SALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLP 310
           FS M S       L+K   YF  V+   L  +   +  LI G C+   +  A  L   + 
Sbjct: 368 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEML 427

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           + G   +VVTYN ++ GLC    + E         LF  +   GLFPD YT  ILI+  C
Sbjct: 428 QQGCAMDVVTYNTILHGLCKRKMLGEADK------LFNEMTERGLFPDSYTLTILIDGHC 481

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K+G + +   +F ++       D VT+ +L+
Sbjct: 482 KLGNLQNAMELFKKMKEKRIKLDVVTYNTLL 512



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 145/352 (41%), Gaps = 63/352 (17%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L    +     +    L   +   G  P  YTYN +IN  CK G+      V
Sbjct: 258 PDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEV 317

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV---------FGCELDVFT- 197
              +LRS  +PD+ T+ SL+ + C +   +E   +F+ +R          F   + +FT 
Sbjct: 318 FAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTR 377

Query: 198 -------------------------YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
                                    Y  LI G CR G    A+NL  EM          C
Sbjct: 378 SGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQG------C 431

Query: 233 EPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
             D +TY+TI+ GLCK    G A+ L       F+ + +    FP             LI
Sbjct: 432 AMDVVTYNTILHGLCKRKMLGEADKL-------FNEMTERGL-FPD------SYTLTILI 477

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           DG CK+  L+ A ELF+ +    +  +VVTYN L+ G    G +D  K       ++  +
Sbjct: 478 DGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKE------IWADM 531

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            S  + P   +++IL+N  C  G +S  F ++  ++     P  +   S+IK
Sbjct: 532 VSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIK 583



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 167/394 (42%), Gaps = 53/394 (13%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  +    L E CK   +GD       E   +F  M + R   P +  F+ +     ++ 
Sbjct: 329 DSTTYRSLLMEACK---KGDAV-----ETENIFSDMRS-RDVVPDLVCFSSMMSLFTRSG 379

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
           + D  L  F  +   GL PD   Y ILI  +C+ G +S    +   +L+     D VT+ 
Sbjct: 380 NLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYN 439

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           +++  LC    + EA  LF ++   G   D +T   LI+G C+ G+   A+ LF++M   
Sbjct: 440 TILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEK 499

Query: 225 NGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFSALNKMAFYFPLVRVQC- 281
                   + D +TY+T++DG  K  +  +A  + ++ M S   L     +  LV   C 
Sbjct: 500 R------IKLDVVTYNTLLDGFGKVGDIDTAKEI-WADMVSKEILPTPISFSILVNALCS 552

Query: 282 ---LCLNF----------------LC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
              L   F                +C  +I G C+           + +   G +P+ ++
Sbjct: 553 KGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCIS 612

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNST--GLFPDLYTYNILINCFCKIGRVSSG 378
           YN LI G   +  M +       F L K++     GL PD++TYN +++ FC+  ++   
Sbjct: 613 YNTLIYGFVKEENMSKA------FGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEA 666

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
             +  +++     PD  T+TSL     IN F  Q
Sbjct: 667 EAVLRKMIERGVNPDRSTYTSL-----INGFVSQ 695



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 123/317 (38%), Gaps = 46/317 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + + ML    +   VT   IL G L K K       LF  +   GLFPD YT  I
Sbjct: 417 SEAMNLRNEMLQQGCAMDVVTYNTILHG-LCKRKMLGEADKLFNEMTERGLFPDSYTLTI 475

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK+G + +   +  ++       D VT+ +L+        I  A  ++  +    
Sbjct: 476 LIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 535

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM--------------------ANGNGEFG- 229
                 +++ L+N LC  GH   A  +++EM                     +GN   G 
Sbjct: 536 ILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGE 595

Query: 230 -----VVCE---PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
                ++ E   PD I+Y+T+I G  KE   +   G           K     P V    
Sbjct: 596 IFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKME----EKQGGLVPDV---- 647

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
               +  ++ G C+ +++K A  + + +   G+ P+  TY  LI G  +   + E     
Sbjct: 648 --FTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEA---- 701

Query: 342 TVFLLFKRLNSTGLFPD 358
             F     +   G  PD
Sbjct: 702 --FRFHDEMLQRGFSPD 716


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 139/300 (46%), Gaps = 41/300 (13%)

Query: 116 LNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175
           ++L GL PD +T NIL NC C + RVS G   +  ILR  + PD VT+ +LIK LC   R
Sbjct: 1   MHLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHR 60

Query: 176 IM-----------------EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           I                  EA  +F +++  G   +V +Y++L++G C  G    +  LF
Sbjct: 61  ISVATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLF 120

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
            EM +     GV  +P+ + ++ +ID LCKE                   +      LV 
Sbjct: 121 NEMVDQ----GV--QPNLVQFNVLIDILCKEGKV-----IEAKKLLEVTIQRGIILDLV- 168

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                  +  LIDG CKI  L  AR+LF S+P  G   N ++Y ILI G C   +++E  
Sbjct: 169 ------TYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAM 222

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
           +      L+  +   G  P++ TY+ L+    + G+V     +FG +  S  + D+  + 
Sbjct: 223 N------LYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYV 276



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 150/340 (44%), Gaps = 51/340 (15%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNIL---FGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
            +EA  +F+ M   +   P V S++ L   F C  K +       LF  +   G+ P+  
Sbjct: 78  EDEAKEIFEEM-KAQGMIPNVISYSSLVHGFCCAGKLEESK---RLFNEMVDQGVQPNLV 133

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
            +N+LI+  CK G+V     +L   ++     D VT+ SLI   C    +  A  LF  +
Sbjct: 134 QFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSM 193

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM------------------------- 221
              GCE +  +Y  LING C+      A+NL+ EM                         
Sbjct: 194 PSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKV 253

Query: 222 ANGNGEFGVV----CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
            + N  FGV+       D+  Y   +DGLCK     N + F  M  F+ L    F     
Sbjct: 254 GDANKLFGVMKASGISVDSCIYVIFLDGLCK-----NGVLFEAMELFNELKSYNFKLDFE 308

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                  ++  LIDGLCK  K++IA E F+ L + GL PNVVT NI+I G C   Q+D+ 
Sbjct: 309 -------SYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKA 361

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
                +F   +++   G  PD+ TYN L+  FC+  ++  
Sbjct: 362 N---ILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEE 398



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 161/348 (46%), Gaps = 45/348 (12%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  R  V +  I+ G L K  H D    +F+ +   G+ P+  +Y+ L++ FC  G++  
Sbjct: 57  RVHRISVATCIIIDG-LCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEE 115

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   ++     P+ V F  LI  LC E +++EA  L       G  LD+ TYN+LI+
Sbjct: 116 SKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLID 175

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--------------- 248
           G C+ G    A  LF  M +        CE + I+Y+ +I+G CK               
Sbjct: 176 GFCKIGDLSSARKLFLSMPSKG------CEHNEISYTILINGYCKIWKVEEAMNLYNEMP 229

Query: 249 EAG--------SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKIS 297
           + G        S    G          NK+   F +++   + ++   ++  +DGLCK  
Sbjct: 230 QVGKRPNVKTYSTLLTGLLQTGKVGDANKL---FGVMKASGISVDSCIYVIFLDGLCKNG 286

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
            L  A ELF  L       +  +Y+ LI GLC  G++      E  +  FK+L+  GL P
Sbjct: 287 VLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKV------EIAWEFFKQLSQEGLQP 340

Query: 358 DLYTYNILINCFCKIGRVSSGFVIF---GRILPSCFTPDAVTFTSLIK 402
           ++ T NI+I+ FC++ +V    ++F    ++  +  TPD +T+ +L++
Sbjct: 341 NVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLR 388



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 155/351 (44%), Gaps = 48/351 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS----- 142
           P + + NIL  CL         L+    +   G  PD  TYN LI   C++ R+S     
Sbjct: 8   PDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVATCI 67

Query: 143 --HGFVVLGR----------ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
              G   +G           +      P+ ++++SL+   C   ++ E+  LF ++   G
Sbjct: 68  IIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQG 127

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + ++  +N LI+ LC+ G  I A  L E       + G++   D +TY+++IDG CK  
Sbjct: 128 VQPNLVQFNVLIDILCKEGKVIEAKKLLEVTI----QRGIIL--DLVTYNSLIDGFCK-- 179

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                     +   S+  K+    P    +   +++  LI+G CKI K++ A  L+  +P
Sbjct: 180 ----------IGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMP 229

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           + G  PNV TY+ L+ GL   G++ +         LF  + ++G+  D   Y I ++  C
Sbjct: 230 QVGKRPNVKTYSTLLTGLLQTGKVGDANK------LFGVMKASGISVDSCIYVIFLDGLC 283

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQVA 414
           K G +     +F  +    F  D  +++ LI       K+     FF+Q++
Sbjct: 284 KNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLS 334



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 33/55 (60%)

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++  GL PDL+T NIL NC C + RVS G      IL   + PD VT+ +LIK L
Sbjct: 1   MHLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGL 55


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 164/377 (43%), Gaps = 59/377 (15%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           FD M+   PS P + +F+ L     K    D   SL+  +   G+ PD   Y+ILIN   
Sbjct: 263 FDMMVRSGPS-PNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLF 321

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           + G++  G  +    L      D V F+S++        + +A  ++T++   G   +V 
Sbjct: 322 RAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           TY+ LINGLCR G  + A  +F ++           EP  +TYS++IDG CK     +  
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQG------LEPSVLTYSSLIDGFCKSENLRDGF 435

Query: 257 GF--------------SCMASFSALNKMA-------FYFPLVRVQCLCLNFL--CLIDGL 293
           G                C    + L++         F+F  V+      N+L   LIDG 
Sbjct: 436 GLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGC 495

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET---------------- 337
            ++ + +   +++  +    ++P+VVTY +L++GL   G++DE                 
Sbjct: 496 FRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDH 555

Query: 338 -------------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
                        +   T   +FK + S G+FPD+  YN+LIN F + G V +   +   
Sbjct: 556 IIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLRE 615

Query: 385 ILPSCFTPDAVTFTSLI 401
           I+     PD VT+ ++I
Sbjct: 616 IIKYGLEPDIVTYNTMI 632



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 151/323 (46%), Gaps = 24/323 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++ M    P V ++ +L   LA+    D  L+LF +L   G  PD   Y  LI+ FCK  
Sbjct: 510 LMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKR 569

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
             + G  +   +  +   PD   +  LI     E  +     L  ++  +G E D+ TYN
Sbjct: 570 DPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYN 629

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           T+I G C       A+ LFE +  G        +P+AIT++ +ID  CK+    +     
Sbjct: 630 TMICGYCSLKIFSKAIKLFEVLKCGR------TQPNAITFTILIDAYCKDGRMDD----- 678

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            M  FS++ +     P   +    L + CLIDG  K    + A EL++ +    + PN+V
Sbjct: 679 AMLIFSSMLERG---PEPNI----LTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIV 731

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           +Y+ILI GLC  G M+E        L F+      L PD+  Y ILI  +CK+GR++   
Sbjct: 732 SYSILIDGLCKKGLMEEAS------LAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAM 785

Query: 380 VIFGRILPSCFTPDAVTFTSLIK 402
           +++  +L +   PD +   +L +
Sbjct: 786 MLYDHMLVNGIMPDDLLQKALAE 808



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 151/330 (45%), Gaps = 25/330 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ V+  ML    S P V +++IL   L +         +F ++   GL P   TY+ L
Sbjct: 363 KAIEVYTRMLKEGIS-PNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSL 421

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ FCK   +  GF + G +LR    PD V  + LI  L  +  + EA   F +    G 
Sbjct: 422 IDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGL 481

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            L+ + +N LI+G  R   T   L ++  M    G + V+  PD +TY+ ++ GL  E G
Sbjct: 482 TLNNYLFNALIDGCFRLKRTRDGLKMYILM----GMYKVI--PDVVTYTVLVKGLA-EQG 534

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +      +A F  L K  F  P   + C       LIDG CK        ++F+ +  
Sbjct: 535 RLD----EALALFFQLLKKGFS-PDHIIYC------TLIDGFCKKRDPATGLQIFKLMQS 583

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+ P++  YN+LI     +G +      E V  L + +   GL PD+ TYN +I  +C 
Sbjct: 584 NGIFPDICIYNVLINMFFREGCV------ENVLELLREIIKYGLEPDIVTYNTMICGYCS 637

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +   S    +F  +      P+A+TFT LI
Sbjct: 638 LKIFSKAIKLFEVLKCGRTQPNAITFTILI 667



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 144/318 (45%), Gaps = 29/318 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F + L  +   P    +  L     K +   T L +FK +   G+FPD   YN+
Sbjct: 537 DEALALF-FQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNV 595

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN F + G V +   +L  I++    PD VT+ ++I   C+     +A  LF  L+   
Sbjct: 596 LINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGR 655

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + +  T+  LI+  C+ G    A+ +F  M     E G   EP+ +TYS +IDG  K  
Sbjct: 656 TQPNAITFTILIDAYCKDGRMDDAMLIFSSML----ERG--PEPNILTYSCLIDGYFKTE 709

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            +         ++F    KM       RV    +++  LIDGLCK   ++ A   FQ   
Sbjct: 710 NTE--------SAFELYEKMLG----DRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAI 757

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
              L+P+V+ Y ILIRG C  G++ E        +L+  +   G+ PD    ++L     
Sbjct: 758 GRHLLPDVIAYGILIRGYCKVGRLAEA------MMLYDHMLVNGIMPD----DLLQKALA 807

Query: 371 KIGRVSSGFVIFGRILPS 388
           + G   S   I+  + P 
Sbjct: 808 EYGFQDSQASIYSTVFPE 825



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 149/369 (40%), Gaps = 74/369 (20%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +  +F    K    +  L+  + L   GL P     N ++   C   ++         ++
Sbjct: 208 YEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMV 267

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           RS  +P+ VTF++LI   C E R+ EA +L+  +   G   D+  Y+ LINGL R G   
Sbjct: 268 RSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLE 327

Query: 213 VALNLFE-EMANG-----------------NGEFGVVCE-----------PDAITYSTII 243
              +LF   +A G                  G+ G   E           P+ +TYS +I
Sbjct: 328 EGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILI 387

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           +GLC+        G      F  + K         ++   L +  LIDG CK   L+   
Sbjct: 388 NGLCRNGRVLEACGV-----FGQILKQG-------LEPSVLTYSSLIDGFCKSENLRDGF 435

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR---LNS-------- 352
            L+  + R G +P+VV  ++LI GL   G MDE   +   F   KR   LN+        
Sbjct: 436 GLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRF--FFQAVKRGLTLNNYLFNALID 493

Query: 353 -----------------TGLF---PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
                             G++   PD+ TY +L+    + GR+     +F ++L   F+P
Sbjct: 494 GCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSP 553

Query: 393 DAVTFTSLI 401
           D + + +LI
Sbjct: 554 DHIIYCTLI 562



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 154/405 (38%), Gaps = 81/405 (20%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKR-------LNLTGL 121
            P  AL  F++  N      PV SF  +   L + + +D    +F R       L + G 
Sbjct: 68  NPTSALRFFEWAENFLGLCHPVQSFCGIAHVLLRHRMFDPATRVFDRMVGQFGNLEVLGE 127

Query: 122 FPDRY---------TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
           F   +          Y+ L++C+C+ G V         + +   +      + ++  L  
Sbjct: 128 FHGSFRNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLID 187

Query: 173 ESRI-----------------------------MEAAALFTKLRVF-GCELDVFTYNTLI 202
             RI                             +E    F +  V  G    +   N ++
Sbjct: 188 SDRIDVILENYEEMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKIL 247

Query: 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCM 261
            GLC      VA + F+ M            P+ +T+ST+I+  CKE      F  ++ M
Sbjct: 248 KGLCMGNQIGVASDFFDMMVRSG------PSPNLVTFSTLINVYCKELRLDEAFSLYNLM 301

Query: 262 ASFSALNKMAFYFPLVR----------------------VQCLCLNFLCLIDGLCKISKL 299
                +  +  Y  L+                       V+   + F  ++D   ++  L
Sbjct: 302 IEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDL 361

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A E++  + + G+ PNVVTY+ILI GLC +G++ E         +F ++   GL P +
Sbjct: 362 GKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACG------VFGQILKQGLEPSV 415

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            TY+ LI+ FCK   +  GF ++G +L     PD V  + LI  L
Sbjct: 416 LTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGL 460


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 142/310 (45%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 131 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 190

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 191 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVD 250

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ +++ M + +        PD ITY+T+I GLCK+             S   L    F
Sbjct: 251 LAMEIYKRMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 304

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 305 ------------TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 352

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S  L PD  TY ++IN FCK G V  G  +   +      
Sbjct: 353 RSVDAEK-------MLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHA 405

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 406 PSVVTYNVLM 415



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 132/295 (44%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 147 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 205

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 206 NGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLL 265

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD  TY+T+IDG CKE   
Sbjct: 266 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG------LKPDKFTYTTLIDGCCKEG-- 317

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 318 ------DLDTAFEHRKRMI----QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 367

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            L P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 368 DLKPDTGTYTMIINEFCKKGDVWKGSK------LLKEMQRDGHAPSVVTYNVLMN 416



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 134/304 (44%), Gaps = 28/304 (9%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L K K++  V   ++ +   G     Y +NIL++ FCK G +     V   I +    P 
Sbjct: 103 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 162

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V++ +L+        + E   L + +   G + DV+TY+ LINGLC+      A  LF+
Sbjct: 163 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 222

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM       G++  P+ +T++T+IDG CK  G  +               M  Y  ++  
Sbjct: 223 EMLVK----GLI--PNGVTFTTLIDGRCKN-GRVDL-------------AMEIYKRMLSQ 262

Query: 280 QCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
             L   + +  LI GLCK   LK A +L   +   GL P+  TY  LI G C +G +D  
Sbjct: 263 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLD-- 320

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
               T F   KR+    +  D   Y  LI+  C+ GR      +   +L     PD  T+
Sbjct: 321 ----TAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTY 376

Query: 398 TSLI 401
           T +I
Sbjct: 377 TMII 380



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 111/241 (46%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 195 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAME 254

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  R+L     PD +T+ +LI  LC +  + +A  L  ++ + G + D FTY TLI+G C
Sbjct: 255 IYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCC 314

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 315 KEGDLDTAFEHRKRMIQEN------IRLDDVAYTALISGLCQEGRSVD------------ 356

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G  P+VVTYN+L+ 
Sbjct: 357 AEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMN 416

Query: 327 G 327
           G
Sbjct: 417 G 417



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 55/124 (44%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++M+  +P   ++  L     K    DT     KR+    +  D   Y  LI+  C+ GR
Sbjct: 294 MSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 353

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +L  +L     PD  T+T +I + C +  + + + L  +++  G    V TYN 
Sbjct: 354 SVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNV 413

Query: 201 LING 204
           L+NG
Sbjct: 414 LMNG 417



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 99  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 152

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI------- 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI       
Sbjct: 153 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 212

Query: 402 KILEINSFFRQV 413
           K+ + N  F ++
Sbjct: 213 KMDDANELFDEM 224


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 152/338 (44%), Gaps = 35/338 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   ++ IL     K    +   ++F ++   G+ P  YT+N +IN  CK+GRVS    
Sbjct: 498 KPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARD 557

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L   ++  F P ++T+  +I     E  I  A +++ ++       +V TY +LING C
Sbjct: 558 KLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFC 617

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK---------------EAG 251
           ++    +AL + ++M     E       D   Y+T+I G CK               E G
Sbjct: 618 KSNKMDLALKMHDDMKRKGLEL------DITVYATLIAGFCKMQDMENACKFFSKLLEVG 671

Query: 252 -SANFLGFSCMAS-FSALNKMAFYFPLV------RVQCLCLNFLCLIDGLCKISKLKIAR 303
            + N + ++ M S +  LN M     L       ++ C    +  LIDGL K  KL  A 
Sbjct: 672 LTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFAL 731

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           +L+  +   G++P++  YN+LI GLCN GQ+      E    + K ++   + P +  YN
Sbjct: 732 DLYSEMLCRGIVPDIFMYNVLINGLCNHGQL------ENAGKILKEMDGNNITPTVLLYN 785

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            LI    K G +   F +   +L     PD  T+  L+
Sbjct: 786 TLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILV 823



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 157/368 (42%), Gaps = 66/368 (17%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++NI+   L +    +   +L+ ++   G+ P   +YN +I   CK G +     V+ 
Sbjct: 431 VVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMN 490

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            I+ S   P+A+T+T L++    +     A  +F ++   G     +T+N++INGLC+ G
Sbjct: 491 GIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVG 550

Query: 210 HTIVA---LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG--------------- 251
               A   LN F + +           P ++TY+ IIDG  KE                 
Sbjct: 551 RVSEARDKLNTFIKQS---------FIPTSMTYNCIIDGYVKEGAIDSAESVYREMCRSE 601

Query: 252 -SANFLGF-SCMASFSALNKMAFYFPL---VRVQCLCLN---FLCLIDGLCKISKLKIAR 303
            S N + + S +  F   NKM     +   ++ + L L+   +  LI G CK+  ++ A 
Sbjct: 602 ISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENAC 661

Query: 304 ELFQSLPRAGLMPNVVTYNILI---RGLCN---------------------------DGQ 333
           + F  L   GL PN + YNI+I   R L N                           DG 
Sbjct: 662 KFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGL 721

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           + E K       L+  +   G+ PD++ YN+LIN  C  G++ +   I   +  +  TP 
Sbjct: 722 LKEGK-LSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPT 780

Query: 394 AVTFTSLI 401
            + + +LI
Sbjct: 781 VLLYNTLI 788



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 117/282 (41%), Gaps = 47/282 (16%)

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  +C  G V+    +   ++    TP+   F+ LI+       + +A  L+T+++  G
Sbjct: 333 LIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMG 392

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEE---MANGNGEFGVVCEPDAITYSTIIDGLC 247
            +  VF  N L+ G  +        NL E    + +G  E G+      +TY+ ++  LC
Sbjct: 393 LQPTVFILNFLLKGFRKQ-------NLLENAYLLLDGAVENGIA---SVVTYNIVLLWLC 442

Query: 248 KEAGSAN--------FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
            E G  N         +G     S  + N M                   I G CK   +
Sbjct: 443 -ELGKVNEACNLWDKMIGKGITPSLVSYNHM-------------------ILGHCKKGCM 482

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A E+   +  +GL PN +TY IL+ G    G        E  F +F ++ + G+ P  
Sbjct: 483 DDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDC------EHAFNMFDQMVAAGIVPTD 536

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           YT+N +IN  CK+GRVS         +   F P ++T+  +I
Sbjct: 537 YTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCII 578



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 28/334 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V   N+L   + +    +    LF  +    ++ D YT  +L+    K G+       
Sbjct: 185 PWVPFVNVLLTAMIRRNMVEDAHRLFDEMAERRIYGDCYTLQVLMRACLKGGKFVEAERY 244

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            G+        DA +++ +I+ +C  S +  A+ L       G      TY  +I    R
Sbjct: 245 FGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVEGDEELGWVPSEGTYAAVIGACVR 304

Query: 208 TGHTIVALNLFEEMANGNGEFGVVC----------EPDAITYSTIIDGLCKEAGSANFLG 257
            G+   AL L +EM +      V              D  +   + D + +   + N   
Sbjct: 305 LGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAI 364

Query: 258 FSCMASF-SALNKMAFYFPL-VRVQCL-------CLNFLCLIDGLCKISKLKIARELFQS 308
           FS +  + S +  +     L  R++C+        LNFL  + G  K + L+ A  L   
Sbjct: 365 FSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFL--LKGFRKQNLLENAYLLLDG 422

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
               G+  +VVTYNI++  LC  G+++E  +      L+ ++   G+ P L +YN +I  
Sbjct: 423 AVENGI-ASVVTYNIVLLWLCELGKVNEACN------LWDKMIGKGITPSLVSYNHMILG 475

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            CK G +     +   I+ S   P+A+T+T L++
Sbjct: 476 HCKKGCMDDAHEVMNGIIESGLKPNAITYTILME 509



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +  L   L K       L L+  +   G+ PD + YN+LIN  C  G++ +   +L  + 
Sbjct: 714 YTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMD 773

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
            +  TP  + + +LI     E  + EA  L  ++   G   D  TY+ L+NG
Sbjct: 774 GNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 825


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 160/332 (48%), Gaps = 25/332 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ VF+ M ++    P V ++  L     K++  D  + LF R+   GL P+  TY  LI
Sbjct: 231 AVDVFERM-DVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALI 289

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              C  G++   + +L  +  S   P+  T + LI  LC   R+ EA  L   L   G +
Sbjct: 290 QGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIK 349

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           ++   Y +LI+GLC+ G    A  L + + +     G V  PDA TYS++IDGLC++   
Sbjct: 350 VNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQ----GFV--PDAHTYSSLIDGLCRQ--- 400

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
              L  + +     + K         VQ   + +  +ID L +      ++++   +  A
Sbjct: 401 -KELSEAMLVLDDMMEK--------GVQPSPVTYTIIIDELVREVGADGSKKILDKMIAA 451

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+ P+V TY I +R  C++G+M++ +H      +   +   G+ P+L TYN LI  +  +
Sbjct: 452 GIKPDVFTYTIFVRSYCHEGRMEDAEH------MMLHMVDHGVCPNLVTYNALICGYANL 505

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G  S  F  F  ++ +   P+  ++T L+++L
Sbjct: 506 GLTSQAFSTFKHMVANGCKPNEESYTVLLRLL 537



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 141/300 (47%), Gaps = 39/300 (13%)

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           TY  LIN +C  G +      L  +LR+ F PD+  +TS +   C    +  A  LF  +
Sbjct: 74  TYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLM 133

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDG 245
            + GC    FTY  L++GLC  G    A+++F  M A+G       C PD   Y+T++ G
Sbjct: 134 PLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADG-------CAPDPHVYATMVHG 186

Query: 246 LCKEAGS--ANFLGFSCMASFSALNKMAFYFPLVRVQC------LCLN------------ 285
           LC    +  A  L    MA     N +  Y  L+   C      L ++            
Sbjct: 187 LCGAGRTREAETLLSDAMAEGFEPN-VVVYNALIDGYCNVGDLELAVDVFERMDVNGCSP 245

Query: 286 ----FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
               +  LI G CK  KL  A  LF  +  AGL+PNVVTY  LI+G C+DGQ+D      
Sbjct: 246 NVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLD------ 299

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             + L + + ++GL P+ +T ++LI+  CK  RV    ++ G ++      + + +TSLI
Sbjct: 300 CAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLI 359



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 134/319 (42%), Gaps = 18/319 (5%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++ L   L + K     + +   +   G+ P   TY I+I+   +         +
Sbjct: 385 PDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKI 444

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L +++ +   PD  T+T  ++  C E R+ +A  +   +   G   ++ TYN LI G   
Sbjct: 445 LDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYAN 504

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGS----ANFLGFSCMA 262
            G T  A + F+ M ANG       C+P+  +Y+ ++  L K+  S    AN +    +A
Sbjct: 505 LGLTSQAFSTFKHMVANG-------CKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIA 557

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
               L+ +      +++      + C +  LC++ +L  A+ L   +  A L P+   Y 
Sbjct: 558 EMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYT 617

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            +I   C    + E             +  +G  P L +Y  +I+  C+ G + +   +F
Sbjct: 618 SIIACCCRLKMLTEA------LTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVF 671

Query: 383 GRILPSCFTPDAVTFTSLI 401
           G +L   +  + + +  LI
Sbjct: 672 GDMLSKEYNYEEIAWRILI 690



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 127/316 (40%), Gaps = 16/316 (5%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +  L   L K   +     L + L   G  PD +TY+ LI+  C+   +S   +VL  ++
Sbjct: 355 YTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMM 414

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                P  VT+T +I +L  E     +  +  K+   G + DVFTY   +   C  G   
Sbjct: 415 EKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRME 474

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA-GSANFLGFSCMASFSALNKMA 271
            A ++   M +       VC P+ +TY+ +I G       S  F  F  M +        
Sbjct: 475 DAEHMMLHMVDHG-----VC-PNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEE 528

Query: 272 FYFPLVRV---QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
            Y  L+R+   +    N       + KI+++K    L + + +  L   +  YN  +  L
Sbjct: 529 SYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSL 588

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C   ++DE K      +L   + S  L P    Y  +I C C++  ++        ++ S
Sbjct: 589 CRVDRLDEAK------ILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKS 642

Query: 389 CFTPDAVTFTSLIKIL 404
            + P   ++  +I  L
Sbjct: 643 GYIPQLESYRHIISSL 658



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/133 (20%), Positives = 51/133 (38%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N     L +    D    L   +    L P    Y  +I C C++  ++     +  ++
Sbjct: 581 YNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMV 640

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           +S + P   ++  +I  LC E  I  A  +F  +       +   +  LI+GL + G+  
Sbjct: 641 KSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVA 700

Query: 213 VALNLFEEMANGN 225
              +L   M   N
Sbjct: 701 ECSSLLSVMEEKN 713


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 143/339 (42%), Gaps = 35/339 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V ++ +L   L K +      +L   +   G+ P+  TYN LI   C+ GR      
Sbjct: 193 RPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTK 252

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L ++     +PD  T+T ++  LC   ++   A +  +    G  L+V TYN LING C
Sbjct: 253 LLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYC 312

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    AL++ + M            P   T++ +I G C        + F    + + 
Sbjct: 313 KGGDMKAALDVLQLMKRNR------VNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAG 366

Query: 267 LNKMAFYF-PLVRVQC------LCLNFLCL----------------IDGLCKISKLKIAR 303
           L+     F  L+  QC      + L  L L                ID LC   +L+ A 
Sbjct: 367 LSPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAH 426

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            LF  LP  G+  + V Y  L+ G C  G +D      + F L +++ S    PD++TYN
Sbjct: 427 SLFSCLPMKGIKAHNVIYTSLVHGYCQVGDID------SAFGLMEKMASENCMPDVHTYN 480

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            LI+  CK+ R+     +  ++      P   TF  LIK
Sbjct: 481 TLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIK 519



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 146/323 (45%), Gaps = 30/323 (9%)

Query: 83  MRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           ++   PP   ++N L     K        +   R+   GL PD +TYN L+   C+ G +
Sbjct: 82  LKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLL 141

Query: 142 SHG---FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           +     FV + R   +C+  D  ++T LIK LCA  RI +A  +F K+    C   V TY
Sbjct: 142 AAACGLFVQMPRRWGACY--DRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTY 199

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
             L++GLC+      A  L  EM N     GVV  P+ +TY+ +I GLC+E         
Sbjct: 200 TVLLDGLCKVRRVGEAEALLGEMVNK----GVV--PNVVTYNALIGGLCQE--------- 244

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                F  + K+     + R    C  +  ++ GLCK  K+    ++       G+   V
Sbjct: 245 ---GRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEV 301

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           +TYN LI G C  G M   K    V  L KR     + P + T+N +I+ FC  G+V   
Sbjct: 302 LTYNALINGYCKGGDM---KAALDVLQLMKR---NRVNPGVQTFNEVIHGFCCGGKVHKA 355

Query: 379 FVIFGRILPSCFTPDAVTFTSLI 401
                ++  +  +P+ VTF SLI
Sbjct: 356 MAFLTQMAGAGLSPNTVTFNSLI 378



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 166/424 (39%), Gaps = 98/424 (23%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  +   M+N +   P V ++N L G L +   +D V  L +++ +    PD +TY  
Sbjct: 213 GEAEALLGEMVN-KGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQ 271

Query: 131 LINCFCKMGRVSHGFVVLGRIL-----------------------------------RSC 155
           +++  CK G+V HG  VL   +                                   R+ 
Sbjct: 272 VVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNR 331

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             P   TF  +I   C   ++ +A A  T++   G   +  T+N+LI+G C  G   +AL
Sbjct: 332 VNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIAL 391

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG--SANFLGFSCMASFSALNKMAFY 273
            L + M     E+GV+  PD  TY+  ID LC E     A+ L FSC+           Y
Sbjct: 392 RLLDLME----EYGVL--PDRQTYAIFIDALCDEGQLEEAHSL-FSCLPMKGIKAHNVIY 444

Query: 274 FPLVRVQCL------------------CL----NFLCLIDGLCKISKLKIARELFQSLPR 311
             LV   C                   C+     +  LIDGLCK+ +L  A +L   + +
Sbjct: 445 TSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKK 504

Query: 312 AGLMPNVVTYNILIRGLCNDGQ-MDETKHYETVF-------------------------- 344
            G+ P   T+NILI+ +  D +  D  K YE +                           
Sbjct: 505 QGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKE 564

Query: 345 ----LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
               +    ++  G+FPD+ TYN +I  +   G     F    ++L     PD  T++ L
Sbjct: 565 ENIDMAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSIL 624

Query: 401 IKIL 404
           +  +
Sbjct: 625 LNYM 628



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 133/318 (41%), Gaps = 25/318 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           P   ++N L   L +         LF ++    G   DRY+Y ILI   C  GR+     
Sbjct: 123 PDTFTYNCLMLGLCRAGLLAAACGLFVQMPRRWGACYDRYSYTILIKGLCAAGRIDDACR 182

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V  ++ R    P   T+T L+  LC   R+ EA AL  ++   G   +V TYN LI GLC
Sbjct: 183 VFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLC 242

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G       L E+M            PD  TY+ ++ GLCK       +G        A
Sbjct: 243 QEGRFDDVTKLLEKMEIQRH------SPDCWTYTQVVHGLCKHGK----VGHGAKVLHEA 292

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           + K         V    L +  LI+G CK   +K A ++ Q + R  + P V T+N +I 
Sbjct: 293 IGK--------GVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNRVNPGVQTFNEVIH 344

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C  G++    H    FL   ++   GL P+  T+N LI+  C +G       +   + 
Sbjct: 345 GFCCGGKV----HKAMAFL--TQMAGAGLSPNTVTFNSLISGQCSVGERKIALRLLDLME 398

Query: 387 PSCFTPDAVTFTSLIKIL 404
                PD  T+   I  L
Sbjct: 399 EYGVLPDRQTYAIFIDAL 416



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 129/262 (49%), Gaps = 23/262 (8%)

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           R++H     G +L+S   P+  T+ +LI   C  + + +A A   ++R  G   D FTYN
Sbjct: 70  RLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYN 129

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            L+ GLCR G    A  LF +M    G     C  D  +Y+ +I GLC    +A  +  +
Sbjct: 130 CLMLGLCRAGLLAAACGLFVQMPRRWG----ACY-DRYSYTILIKGLC----AAGRIDDA 180

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
           C   F+ +++  +  P V        +  L+DGLCK+ ++  A  L   +   G++PNVV
Sbjct: 181 CRV-FAKMSR-GWCRPGVHT------YTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVV 232

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TYN LI GLC +G+ D+      V  L +++      PD +TY  +++  CK G+V  G 
Sbjct: 233 TYNALIGGLCQEGRFDD------VTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGA 286

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +    +      + +T+ +LI
Sbjct: 287 KVLHEAIGKGVALEVLTYNALI 308



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 137/320 (42%), Gaps = 38/320 (11%)

Query: 90  VTSFNILFGCLA----KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           + + N+++  L     +    D+   L +++      PD +TYN LI+  CK+ R+    
Sbjct: 437 IKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAI 496

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +L ++ +    P   TF  LIK +  + +  +AA ++ ++   GC+ D  TY   I+  
Sbjct: 497 DLLDKMKKQGIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTD 556

Query: 206 CRTGHTI---VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA 262
              G T    + + + E       E GV   PD  TY+ II             G    A
Sbjct: 557 WFEGATKEENIDMAVVEMH-----EAGVF--PDVETYNAIIKAYVDA-------GLKEKA 602

Query: 263 SFSALNKMAFYF-PLVRVQCLCLNFLCLIDG--------LCKISKLKIARELFQSLPRAG 313
            F+ +  ++    P      + LN++C  D         + K+  ++  +ELF+ +  + 
Sbjct: 603 FFAHVKMLSVPIDPDCTTYSILLNYMCNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESD 662

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK-RLNSTGLFPDLYTYNILINCFCKI 372
             P + TY  L+RGLCN  +++E +     +LL K + NS  L  D+  Y  L+ C+C +
Sbjct: 663 AAPGISTYKALLRGLCNQCRLEEVE-----WLLLKMQGNSILLDEDMSDY--LLGCYCNL 715

Query: 373 GRVSSGFVIFGRILPSCFTP 392
                    F  +    F P
Sbjct: 716 EMYREACEQFRSMAHQSFQP 735


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 176/407 (43%), Gaps = 43/407 (10%)

Query: 9   GRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSI 68
           GR  F + L RK    +S N  +Y      L  T + R + E  LK+        D+ + 
Sbjct: 239 GRELFDEMLRRK----VSPNVVTYSCLMQGLGRTGRWREASE-MLKDMTARGVRPDVVAY 293

Query: 69  T-----------PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLN 117
           T             +A+ V D M+  +   P   ++N++   L K    D    + + + 
Sbjct: 294 TVLADGLCKNGRAGDAIKVLDLMVQ-KGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMV 352

Query: 118 LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF--TPDAVTFTSLIKDLCAESR 175
             G  PD  TYN L+   C  G++     +   +L   F   PD  T  +LI+ LC E R
Sbjct: 353 KKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGR 412

Query: 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
           + +AA + + +   G + ++ TYN LI G       I AL L++       E G    P+
Sbjct: 413 VHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAV----ESGF--SPN 466

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
           ++TYS +I+GLCK    +   G  C    S +       P V      +++  L+  LC+
Sbjct: 467 SMTYSVMINGLCKMQMLSVARGLFCKMKDSGIR------PTV------IDYNALMTSLCR 514

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
              L+ AR LFQ +       +VV++NI+I G    G +   K       L   +    L
Sbjct: 515 EDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKE------LLSEMFMMDL 568

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            PD  T++ILIN F K+G +     ++ +++     P  V F SL+K
Sbjct: 569 VPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLK 615



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 159/358 (44%), Gaps = 37/358 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F+ M      RP + ++++L  C  K+      L L + +   GL  D + Y+ L
Sbjct: 167 EARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSL 226

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ FC  G +  G  +   +LR   +P+ VT++ L++ L    R  EA+ +   +   G 
Sbjct: 227 ISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGV 286

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV  Y  L +GLC+ G    A+ + + M    GE     EP  +TY+ +++GLCKE  
Sbjct: 287 RPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQ-KGE-----EPGTLTYNVVVNGLCKEDR 340

Query: 252 SANFLGFSCMASFSALNKMAF-YFPLVRVQC-------------LCLN---------FLC 288
             +  G   M         A  Y  L++  C             L L+         F C
Sbjct: 341 MDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTC 400

Query: 289 --LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LI GLCK  ++  A  +  S+   GL  N+VTYN LI G     ++ E         L
Sbjct: 401 NNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEA------LKL 454

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +K    +G  P+  TY+++IN  CK+  +S    +F ++  S   P  + + +L+  L
Sbjct: 455 WKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSL 512



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 161/360 (44%), Gaps = 37/360 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVT-SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           ++A+ +F   ++  P+ PP   + + L   L K + YD V+S++ ++    + P   + +
Sbjct: 22  SDAVSLFHRTIDNDPTSPPSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLS 81

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RV 188
            L   F      S  F VL  + +  F  +      ++K  C   +  +A +LF+++ R 
Sbjct: 82  ALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRN 141

Query: 189 FGCEL-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
           + C + D  TYNTL+NG C+      A  LFE M  G       C P+ +TYS +ID  C
Sbjct: 142 YDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGD-----CRPNLVTYSVLIDCYC 196

Query: 248 KEAGSANFLGFSCMASFSALNKMAF-YFPLV----------------------RVQCLCL 284
           K       LG         L    F Y  L+                      +V    +
Sbjct: 197 KSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVV 256

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            + CL+ GL +  + + A E+ + +   G+ P+VV Y +L  GLC +G+  +    + + 
Sbjct: 257 TYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDA--IKVLD 314

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           L+ ++    G  P   TYN+++N  CK  R+   F +   ++     PDAVT+ +L+K L
Sbjct: 315 LMVQK----GEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGL 370



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 138/331 (41%), Gaps = 33/331 (9%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMR-PSRPPVTSFNILFGCLAKT 103
           D  +    LK  C   G G I     +EA+ ++  +L+ +   +P V + N L   L K 
Sbjct: 359 DAVTYNTLLKGLC---GAGKI-----HEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKE 410

Query: 104 KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTF 163
                   +   +   GL  +  TYN LI  +    ++     +    + S F+P+++T+
Sbjct: 411 GRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTY 470

Query: 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           + +I  LC    +  A  LF K++  G    V  YN L+  LCR      A +LF+EM N
Sbjct: 471 SVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRN 530

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
            N         D ++++ IIDG  K AG         + S   L    F   LV      
Sbjct: 531 VNHNV------DVVSFNIIIDGTLK-AGD--------VKSAKELLSEMFMMDLVPD---A 572

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           + F  LI+   K+  L  A  L++ +   G +P VV ++ L++G    G+       E +
Sbjct: 573 VTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGET------EKI 626

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
             L  ++    +  D    + ++ C C + R
Sbjct: 627 ISLLHQMADKDVVLDSKLTSTILACLCHMSR 657


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 139/308 (45%), Gaps = 18/308 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     Y+   S+ + +   G  PD  TY+ ++N  C   ++   F++   + R     
Sbjct: 457 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA 516

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T ++   C    I +A   F ++R  GC  +V TY  LI+   +      A  LF
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG--FSCMASFSALNKMAFYFPL 276
           E M +        C P+ +TYS +IDG CK AG        F  M     +  +  YF  
Sbjct: 577 ETMLSEG------CLPNIVTYSALIDGHCK-AGQVEKACQIFERMCGSKDVPDVDMYFKQ 629

Query: 277 VRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
                   N +    L+DG CK  +++ AR+L  ++   G  PN + Y+ LI GLC  G+
Sbjct: 630 YDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGK 689

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           +DE +  +T       ++  G    LYTY+ LI+ + K+ R      +  ++L +   P+
Sbjct: 690 LDEAQEVKT------EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 743

Query: 394 AVTFTSLI 401
            V +T +I
Sbjct: 744 VVIYTEMI 751



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 140/360 (38%), Gaps = 76/360 (21%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP  +++N L     K    D+   + + ++L  L  D +T        CK+G+      
Sbjct: 232 RPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALT 291

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY-------- 198
           +   +    F PD V +T LI  LC  S   EA     ++R   C  +V TY        
Sbjct: 292 L---VETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCL 348

Query: 199 ---------------------------NTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
                                      N+L++  C +G    A  L ++M        V 
Sbjct: 349 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKM--------VK 400

Query: 232 CE--PDAITYSTIIDGLCKEAGSAN--FLGFS------CMASFSALNKMAFYFPLVRVQC 281
           C   P  + Y+ +I  +C +  S N   L  +       +A+   LNK            
Sbjct: 401 CGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNK------------ 448

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             +N       LC   K + A  + + +   G +P+  TY+ ++  LCN  +M      E
Sbjct: 449 --INVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM------E 500

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             FLLF+ +   GL  D+YTY I+++ FCK G +      F  +     TP+ VT+T+LI
Sbjct: 501 LAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALI 560



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 158/383 (41%), Gaps = 79/383 (20%)

Query: 76  VFDYMLNMRPSR--PPVTSFNILF-GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
             D++  MR +   P V +++ L  GCL K K       +   + + G +P    +N L+
Sbjct: 321 AMDFLNRMRATSCLPNVVTYSTLLCGCLNK-KQLGRCKRVLNMMMMEGCYPSPKIFNSLV 379

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE----------------SRI 176
           + +C  G  S+ + +L ++++    P  V +  LI  +C +                S +
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEM 439

Query: 177 MEAAALFTKLRVF-------------------------GCELDVFTYNTLINGLCRTGHT 211
           + A  +  K+ V                          G   D  TY+ ++N LC     
Sbjct: 440 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 499

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
            +A  LFEEM  G    G+V   D  TY+ ++D  CK AG               + +  
Sbjct: 500 ELAFLLFEEMKRG----GLVA--DVYTYTIMVDSFCK-AG--------------LIEQAR 538

Query: 272 FYFPLVR-VQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
            +F  +R V C    + +  LI    K  K+  A ELF+++   G +PN+VTY+ LI G 
Sbjct: 539 KWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGH 598

Query: 329 CNDGQMDE----------TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           C  GQ+++          +K    V + FK+ +     P++ TY  L++ FCK  RV   
Sbjct: 599 CKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEA 658

Query: 379 FVIFGRILPSCFTPDAVTFTSLI 401
             +   +      P+ + + +LI
Sbjct: 659 RKLLDAMSMEGCEPNQIVYDALI 681



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 139/358 (38%), Gaps = 59/358 (16%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
            RP V ++  L     K+   +    L   +++ G  P++  Y+ LI+  CK+G++    
Sbjct: 635 ERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ 694

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            V   +    F     T++SLI       R   A+ + +K+    C  +V  Y  +I+GL
Sbjct: 695 EVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGL 754

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G T  A  L + M          C+P+ +TY+ +IDG                  F 
Sbjct: 755 CKVGKTDEAYKLMQMMEEKG------CQPNVVTYTAMIDG------------------FG 790

Query: 266 ALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            + K+     L+       V    + +  LID  CK   L +A  L + + +     +  
Sbjct: 791 MIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTA 850

Query: 320 TYNILIR----------GLCNDGQMDETKHYETVFLLF-------KRLN----------- 351
            Y  +I           GL ++   D+T  + +V+ L        +RL            
Sbjct: 851 GYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT 910

Query: 352 -STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            S  L     TYN LI   C   +V + F +F  +      P+  +F SLIK L  NS
Sbjct: 911 FSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNS 968



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 134/338 (39%), Gaps = 47/338 (13%)

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
           +F  +  +K    V   FK+ +     P+  TY  L++ FCK  RV     +L  +    
Sbjct: 610 IFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG 669

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             P+ + + +LI  LC   ++ EA  + T++   G    ++TY++LI+   +     +A 
Sbjct: 670 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 729

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            +  +M   +      C P+ + Y+ +IDGLCK   +        M              
Sbjct: 730 KVLSKMLENS------CAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG--------- 774

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
               Q   + +  +IDG   I K++   EL + +   G+ PN VTY +LI   C +G +D
Sbjct: 775 ---CQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALD 831

Query: 336 ----------------ETKHYETVFLLFKR--LNSTGLF---------PDLYTYNILINC 368
                            T  Y  V   F +  + S GL          P L  Y +LI+ 
Sbjct: 832 VAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDN 891

Query: 369 FCKIGRVSSGFVIFGRI--LPSCFTPDAVTFTSLIKIL 404
             K  R+     +   +    +     + T+ SLI+ L
Sbjct: 892 LIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESL 929



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 115/302 (38%), Gaps = 38/302 (12%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N+L+   C+ G  S     LGR+    F P   T+  LI+      R+  A+ +  ++ +
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 263

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
               +D FT       LC+ G    AL L E       E  V   PD + Y+ +I GLC+
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREALTLVE------TENFV---PDTVFYTKLISGLCE 314

Query: 249 EAGSANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLN---------------------- 285
            +     + F + M + S L  +  Y  L+   C CLN                      
Sbjct: 315 ASLFEEAMDFLNRMRATSCLPNVVTYSTLL---CGCLNKKQLGRCKRVLNMMMMEGCYPS 371

Query: 286 ---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
              F  L+   C       A +L + + + G MP  V YNILI  +C D         + 
Sbjct: 372 PKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDL 431

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
               +  + + G+  +    +    C C  G+    F +   ++   F PD  T++ ++ 
Sbjct: 432 AEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLN 491

Query: 403 IL 404
            L
Sbjct: 492 YL 493



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 18/223 (8%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  +  +P V ++  +          +T L L +R+   G+ P+  TY +LI+  CK G
Sbjct: 769 MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNG 828

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            +     +L  + ++ +      +  +I+    E   +E+  L  ++        +  Y 
Sbjct: 829 ALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDEIGQDDTAPFLSVYR 886

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LI+ L +     +AL L EE+A     F       + TY+++I+ LC        L   
Sbjct: 887 LLIDNLIKAQRLEMALRLLEEVAT----FSATLVDYSSTYNSLIESLC--------LANK 934

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
              +F   ++M     +  +Q  C     LI GL + SK+  A
Sbjct: 935 VETAFQLFSEMTKKGVIPEMQSFC----SLIKGLFRNSKISEA 973



 Score = 38.5 bits (88), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 71/191 (37%), Gaps = 36/191 (18%)

Query: 2   YPTYKI-------NGRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLK 54
           Y TY++       NG +  A  L  +        +  +PT TA  R  +      E F K
Sbjct: 814 YVTYRVLIDHCCKNGALDVAHNLLEEM------KQTHWPTHTAGYRKVI------EGFNK 861

Query: 55  ERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFK 114
           E  +S G  D                +    + P ++ + +L   L K +  +  L L +
Sbjct: 862 EFIESLGLLD---------------EIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLE 906

Query: 115 RLNL--TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
            +      L     TYN LI   C   +V   F +   + +    P+  +F SLIK L  
Sbjct: 907 EVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFR 966

Query: 173 ESRIMEAAALF 183
            S+I EA  L 
Sbjct: 967 NSKISEALLLL 977


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 165/373 (44%), Gaps = 43/373 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD ML  +   P + ++ I+   L      D  L L + +    L P  +  N+
Sbjct: 54  SKARKIFDDML-YKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNM 112

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++C CK G+V   + +  R+   C + D +++  L   LC   +I  A A+F ++    
Sbjct: 113 LVSCLCKNGKVDAAYELYKRLSDEC-SLDRISYNMLTYGLCKADQIDRALAVFGEMEENA 171

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
               + TYN L+ G CR G    A+ L EEM  G     VV  PD  +Y+T+I G CK  
Sbjct: 172 VVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVV--PDMYSYNTVISGFCKAR 229

Query: 249 -------------EAG-SANFLGFSCM-------ASFSALNKMAFYFPLVRVQCLCLNFL 287
                        ++G S N + F+ +             N M  Y      +   + + 
Sbjct: 230 QLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYT 289

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI G  +  ++  A + F  + R G+ PNV TY  LI GLC+  ++      E    + 
Sbjct: 290 VLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKV------EDALEIL 343

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT---PDAVTFTSLI--- 401
           KR++STG  P++ TY  +I   CK G++     +F   + S      PD+  +++++   
Sbjct: 344 KRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAYSTIVYWL 403

Query: 402 ----KILEINSFF 410
               K LE   +F
Sbjct: 404 CRQSKFLEAYEYF 416



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 144/322 (44%), Gaps = 31/322 (9%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S+N+L   L K    D  L++F  +    + P   TYN L+  +C+ GR+     +L  +
Sbjct: 143 SYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEM 202

Query: 152 LR----SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +     S   PD  ++ ++I   C   ++  A  +  ++   GC  +V T+NTL++GLC 
Sbjct: 203 IEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCL 262

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           TG    A  +FE M   N      CEP A+TY+ +I G                A    +
Sbjct: 263 TGKLDEANAMFEYMVERN------CEPTAVTYTVLITG---------------HARALRI 301

Query: 268 NKMAFYF-PLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           +K   YF  ++R  V+     +  LI GLC  +K++ A E+ + +   G  PNVVTY  +
Sbjct: 302 DKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRV 361

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I  LC  GQ++       +F       +    PD Y Y+ ++   C+  +    +  F R
Sbjct: 362 IGALCKGGQIERATK---LFNDAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLR 418

Query: 385 ILPSCFTPDAVTFTSLIKILEI 406
           ++ S        + ++   LE+
Sbjct: 419 MVESKLVAKPHIYKAMADGLEL 440



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 19/243 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S+N +     K +   T   + +R+  +G  P+  T+N L++  C  G++     +
Sbjct: 213 PDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAM 272

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++     P AVT+T LI       RI +A   F  +   G E +V+TY  LI GLC 
Sbjct: 273 FEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCD 332

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFS 265
                 AL + + M++         EP+ +TY+ +I  LCK  +   A  L    M S +
Sbjct: 333 ANKVEDALEILKRMSSTGR------EPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRT 386

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           A  K   Y            +  ++  LC+ SK   A E F  +  + L+     Y  + 
Sbjct: 387 AKCKPDSY-----------AYSTIVYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMA 435

Query: 326 RGL 328
            GL
Sbjct: 436 DGL 438



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 10/179 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F+YM+  R   P   ++ +L    A+    D     F  +   G+ P+ YTY  
Sbjct: 267 DEANAMFEYMVE-RNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTA 325

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL---R 187
           LI   C   +V     +L R+  +   P+ VT+T +I  LC   +I  A  LF      R
Sbjct: 326 LIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATKLFNDAMGSR 385

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              C+ D + Y+T++  LCR    + A   F  M     E  +V +P    Y  + DGL
Sbjct: 386 TAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMV----ESKLVAKPH--IYKAMADGL 438


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 137/307 (44%), Gaps = 16/307 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     Y+   S+ + +   G  PD  TY+ ++N  C   ++   F++   + R     
Sbjct: 457 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA 516

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T ++   C    I +A   F ++R  GC  +V TY  LI+   +      A  LF
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLV 277
           E M +        C P+ +TYS +IDG CK          F  M     +  +  YF   
Sbjct: 577 ETMLSEG------CLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQY 630

Query: 278 RVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
                  N +    L+DG CK  +++ AR+L  ++   G  PN + Y+ LI GLC  G++
Sbjct: 631 DDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKL 690

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           DE +  +T       ++  G    LYTY+ LI+ + K+ R      +  ++L +   P+ 
Sbjct: 691 DEAQEVKT------EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNV 744

Query: 395 VTFTSLI 401
           V +T +I
Sbjct: 745 VIYTEMI 751



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 138/358 (38%), Gaps = 72/358 (20%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP  +++N L     K    D+   + + ++L  L  D +T        CK+G+      
Sbjct: 232 RPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALT 291

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY-------- 198
           +   +    F PD V +T LI  LC  S   EA     ++R   C  +V TY        
Sbjct: 292 L---VETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCL 348

Query: 199 ---------------------------NTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
                                      N+L++  C +G    A  L ++M          
Sbjct: 349 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH----- 403

Query: 232 CEPDAITYSTIIDGLCKEAGSAN--FLGFS------CMASFSALNKMAFYFPLVRVQCLC 283
             P  + Y+ +I  +C +  S N   L  +       +A+   LNK              
Sbjct: 404 -MPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNK-------------- 448

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           +N       LC   K + A  + + +   G +P+  TY+ ++  LCN  +M      E  
Sbjct: 449 INVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM------ELA 502

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           FLLF+ +   GL  D+YTY I+++ FCK G +      F  +     TP+ VT+T+LI
Sbjct: 503 FLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALI 560



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 158/383 (41%), Gaps = 79/383 (20%)

Query: 76  VFDYMLNMRPSR--PPVTSFNILF-GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
             D++  MR +   P V +++ L  GCL K K       +   + + G +P    +N L+
Sbjct: 321 AMDFLNRMRATSCLPNVVTYSTLLCGCLNK-KQLGRCKRVLNMMMMEGCYPSPKIFNSLV 379

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE----------------SRI 176
           + +C  G  S+ + +L ++++    P  V +  LI  +C +                S +
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEM 439

Query: 177 MEAAALFTKLRVF-------------------------GCELDVFTYNTLINGLCRTGHT 211
           + A  +  K+ V                          G   D  TY+ ++N LC     
Sbjct: 440 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 499

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
            +A  LFEEM  G    G+V   D  TY+ ++D  CK AG               + +  
Sbjct: 500 ELAFLLFEEMKRG----GLV--ADVYTYTIMVDSFCK-AG--------------LIEQAR 538

Query: 272 FYFPLVR-VQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
            +F  +R V C    + +  LI    K  K+  A ELF+++   G +PN+VTY+ LI G 
Sbjct: 539 KWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGH 598

Query: 329 CNDGQMDE----------TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           C  GQ+++          +K    V + FK+ +     P++ TY  L++ FCK  RV   
Sbjct: 599 CKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEA 658

Query: 379 FVIFGRILPSCFTPDAVTFTSLI 401
             +   +      P+ + + +LI
Sbjct: 659 RKLLDAMSMEGCEPNQIVYDALI 681



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 139/358 (38%), Gaps = 59/358 (16%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
            RP V ++  L     K+   +    L   +++ G  P++  Y+ LI+  CK+G++    
Sbjct: 635 ERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ 694

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            V   +    F     T++SLI       R   A+ + +K+    C  +V  Y  +I+GL
Sbjct: 695 EVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGL 754

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G T  A  L + M          C+P+ +TY+ +IDG                  F 
Sbjct: 755 CKVGKTDEAYKLMQMMEEKG------CQPNVVTYTAMIDG------------------FG 790

Query: 266 ALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            + K+     L+       V    + +  LID  CK   L +A  L + + +     +  
Sbjct: 791 MIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTA 850

Query: 320 TYNILIR----------GLCNDGQMDETKHYETVFLLF-------KRLN----------- 351
            Y  +I           GL ++   D+T  + +V+ L        +RL            
Sbjct: 851 GYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT 910

Query: 352 -STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            S  L     TYN LI   C   +V + F +F  +      P+  +F SLIK L  NS
Sbjct: 911 FSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNS 968



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 134/338 (39%), Gaps = 47/338 (13%)

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
           +F  +  +K    V   FK+ +     P+  TY  L++ FCK  RV     +L  +    
Sbjct: 610 IFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEG 669

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             P+ + + +LI  LC   ++ EA  + T++   G    ++TY++LI+   +     +A 
Sbjct: 670 CEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLAS 729

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            +  +M   +      C P+ + Y+ +IDGLCK   +        M              
Sbjct: 730 KVLSKMLENS------CAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG--------- 774

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
               Q   + +  +IDG   I K++   EL + +   G+ PN VTY +LI   C +G +D
Sbjct: 775 ---CQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALD 831

Query: 336 ----------------ETKHYETVFLLFKR--LNSTGLF---------PDLYTYNILINC 368
                            T  Y  V   F +  + S GL          P L  Y +LI+ 
Sbjct: 832 VAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDN 891

Query: 369 FCKIGRVSSGFVIFGRI--LPSCFTPDAVTFTSLIKIL 404
             K  R+     +   +    +     + T+ SLI+ L
Sbjct: 892 LIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESL 929



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 115/302 (38%), Gaps = 38/302 (12%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N+L+   C+ G  S     LGR+    F P   T+  LI+      R+  A+ +  ++ +
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 263

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
               +D FT       LC+ G    AL L E       E  V   PD + Y+ +I GLC+
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREALTLVET------ENFV---PDTVFYTKLISGLCE 314

Query: 249 EAGSANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLN---------------------- 285
            +     + F + M + S L  +  Y  L+   C CLN                      
Sbjct: 315 ASLFEEAMDFLNRMRATSCLPNVVTYSTLL---CGCLNKKQLGRCKRVLNMMMMEGCYPS 371

Query: 286 ---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
              F  L+   C       A +L + + + G MP  V YNILI  +C D         + 
Sbjct: 372 PKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDL 431

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
               +  + + G+  +    +    C C  G+    F +   ++   F PD  T++ ++ 
Sbjct: 432 AEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLN 491

Query: 403 IL 404
            L
Sbjct: 492 YL 493



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 18/223 (8%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  +  +P V ++  +          +T L L +R+   G+ P+  TY +LI+  CK G
Sbjct: 769 MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNG 828

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            +     +L  + ++ +      +  +I+    E   +E+  L  ++        +  Y 
Sbjct: 829 ALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDEIGQDDTAPFLSVYR 886

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LI+ L +     +AL L EE+A     F       + TY+++I+ LC        L   
Sbjct: 887 LLIDNLIKAQRLEMALRLLEEVAT----FSATLVDYSSTYNSLIESLC--------LANK 934

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
              +F   ++M     +  +Q  C     LI GL + SK+  A
Sbjct: 935 VETAFQLFSEMTKKGVIPEMQSFC----SLIKGLFRNSKISEA 973



 Score = 38.9 bits (89), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 74/201 (36%), Gaps = 36/201 (17%)

Query: 2   YPTYKI-------NGRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLK 54
           Y TY++       NG +  A  L  +        +  +PT TA  R  +      E F K
Sbjct: 814 YVTYRVLIDHCCKNGALDVAHNLLEEM------KQTHWPTHTAGYRKVI------EGFNK 861

Query: 55  ERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFK 114
           E  +S G  D                +    + P ++ + +L   L K +  +  L L +
Sbjct: 862 EFIESLGLLD---------------EIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLE 906

Query: 115 RLNL--TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
            +      L     TYN LI   C   +V   F +   + +    P+  +F SLIK L  
Sbjct: 907 EVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFR 966

Query: 173 ESRIMEAAALFTKLRVFGCEL 193
            S+I EA  L   +    C L
Sbjct: 967 NSKISEALLLLDFISHMVCPL 987


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 139/317 (43%), Gaps = 25/317 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P + ++N L      T   D+ L L + +  TG  PD  TYN LI+  CK GRV     
Sbjct: 7   EPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVNR 66

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           + G +      PD +T++ LI   C   RI  A  LF  +       DV T+ TL+ G C
Sbjct: 67  LFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYC 126

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A  L EE+   +      C PD  TY++++DG CK            + +   
Sbjct: 127 NAGLVDDAERLLEEIVASD------CSPDVYTYTSLVDGFCKVK--------RMVEAHRV 172

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L +MA        Q   + +  LID  C   K  +A +L + +   G+ PN +TY  LI 
Sbjct: 173 LKRMAKG----ECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIG 228

Query: 327 GLCNDGQMDETKHYETVFLLFKRLN-STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           G C  G ++E         + +RL  +     D++ Y ++++  C+ GR+S+   +   I
Sbjct: 229 GFCGTGDLEEAHK------MLERLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAI 282

Query: 386 LPSCFTPDAVTFTSLIK 402
             S   P    + +LI+
Sbjct: 283 KQSGTPPRHDIYVALIR 299



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 118/265 (44%), Gaps = 21/265 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++ L G   K    +   +LF  +      PD  T+  L+  +C  G V     +
Sbjct: 78  PDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERL 137

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  I+ S  +PD  T+TSL+   C   R++EA  +  ++    C+ +V  Y  LI+  C 
Sbjct: 138 LEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCS 197

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G   VA  L EEM  GNG      +P+AITY ++I G C   G+ +      M      
Sbjct: 198 AGKPTVAYKLLEEMV-GNG-----VQPNAITYRSLIGGFC---GTGDLEEAHKMLERLER 248

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N+          +     +  ++DGLC+  ++  A EL +++ ++G  P    Y  LIRG
Sbjct: 249 NE--------NCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRG 300

Query: 328 ---LCNDGQMDETKHYETVFLLFKR 349
              L   G+ +  K YE V     R
Sbjct: 301 EMTLSRKGRPN-AKVYEAVIQELAR 324



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+ PN+VTYN LI G C    +D T       LL + + +TG  PD+ TYN LI+  CK 
Sbjct: 5   GIEPNMVTYNSLIHGFCMTNGVDST------LLLMEEMTATGCLPDINTYNTLIDGLCKT 58

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           GRV     +FG +      PD +T++ LI
Sbjct: 59  GRVPEVNRLFGEMKAKFCNPDVITYSCLI 87


>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
 gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
          Length = 694

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 147/315 (46%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V S+NI    L + +  +  +S+++ L   G   D  TY +LI+  CK G ++    +L 
Sbjct: 359 VVSYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILK 418

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
                    DA  ++S++  L  + R+ EA  +  ++  +GCEL     N LING  R  
Sbjct: 419 EAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRAS 478

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+  F EM          C P  ++Y+T+I+GLCK         FS   SF     
Sbjct: 479 KLEEAICFFREMETKG------CSPTVVSYNTLINGLCKAE------RFSDAYSFVKEML 526

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
              + P +      + +  L+DGLC+  K+ +A  L++ +   GL P+V  +NIL+ GLC
Sbjct: 527 EKDWKPDM------ITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLC 580

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G++      E   LL+  +  +   P+L T+N L++   K        VI+  +  + 
Sbjct: 581 SAGKI------EDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNG 634

Query: 390 FTPDAVTFTSLIKIL 404
           F PD +++   +K L
Sbjct: 635 FQPDIISYNITLKGL 649



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 158/338 (46%), Gaps = 46/338 (13%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF---VVL 148
           +++ L   L    + D  + ++K +    +  D  TYN L+N FC+ G++   F   V++
Sbjct: 292 TYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMM 351

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
           G+   +C   + V++   I+ L    ++ EA +++  LR  G   D  TY  LI+GLC+ 
Sbjct: 352 GK--ENCH--NVVSYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKN 407

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-------FSCM 261
           GH   AL + +E  +G  +       DA  YS+I+DGL K+      LG       + C 
Sbjct: 408 GHLNKALKILKEAKDGGDKL------DAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCE 461

Query: 262 ASFSALNKMAFYFPLVRV----QCLC--------------LNFLCLIDGLCKISKLKIAR 303
            S    N +   F  VR     + +C              +++  LI+GLCK  +   A 
Sbjct: 462 LSPHVCNPLINGF--VRASKLEEAICFFREMETKGCSPTVVSYNTLINGLCKAERFSDAY 519

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
              + +      P+++TY++L+ GLC   ++D          L++++   GL PD+  +N
Sbjct: 520 SFVKEMLEKDWKPDMITYSLLMDGLCQGKKID------MALNLWRQVLVKGLEPDVTMHN 573

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           IL++  C  G++    +++  +  S   P+ VT  +L+
Sbjct: 574 ILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLM 611



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 165/417 (39%), Gaps = 94/417 (22%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + D+M + +  +P V S+  +   + K+    + L +F  +   GL PD   YNI+
Sbjct: 167 EAKGLLDWMWS-KDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIM 225

Query: 132 INCFCKMGRVSHGFVVLGRILR-SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           I+ F K G    G  +  R+++ SC  P+ VT+  +I  LC   R  E+  ++ +++   
Sbjct: 226 IDGFFKRGDYVQGKEIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNE 285

Query: 191 CELDVFTY-----------------------------------NTLINGLCRTG------ 209
           CE+D+FTY                                   N L+NG CR G      
Sbjct: 286 CEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESF 345

Query: 210 -----------HTIVALNLFEE--MANGNGEFGV-VCE--------PDAITYSTIIDGLC 247
                      H +V+ N+F      N   E  + V E         D+ TY  +I GLC
Sbjct: 346 ELWVMMGKENCHNVVSYNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLC 405

Query: 248 KEA--------------GSANFLGFSCMASFSALNK-------MAFYFPLVRVQCLCLNF 286
           K                G      F+  +    L+K       +     + +  C     
Sbjct: 406 KNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPH 465

Query: 287 LC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
           +C  LI+G  + SKL+ A   F+ +   G  P VV+YN LI GLC      + + +   +
Sbjct: 466 VCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTLINGLC------KAERFSDAY 519

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              K +      PD+ TY++L++  C+  ++     ++ ++L     PD      L+
Sbjct: 520 SFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILM 576



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 155/358 (43%), Gaps = 35/358 (9%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
           S  PNEAL  F  M  +   +P + S+N L     +    +   S        G+ P+  
Sbjct: 91  SKMPNEALDCFQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFETVGILPNLQ 150

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           TYNILI    K  +      +L  +      PD  ++ ++I  +     ++ A  +F ++
Sbjct: 151 TYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEM 210

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G   DV  YN +I+G  + G  +    ++E +  G+  +     P+ +TY+ +I+GL
Sbjct: 211 FERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVKGSCVY-----PNVVTYNVMINGL 265

Query: 247 CKEAGSANFLGF-------SC---MASFSAL-----------NKMAFYFPLVR--VQCLC 283
           CK       L          C   + ++S+L             +  Y  +V+  V    
Sbjct: 266 CKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDV 325

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           + +  L++G C+  K+K + EL+  + +     NVV+YNI IRGL  + +++E     +V
Sbjct: 326 VTYNALLNGFCRAGKIKESFELWVMMGKENCH-NVVSYNIFIRGLFENRKVEEAI---SV 381

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           + L +R  S     D  TY +LI+  CK G ++    I           DA  ++S++
Sbjct: 382 WELLRRRGSGA---DSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIV 436



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 22/244 (9%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N L     +    +  +  F+ +   G  P   +YN LIN  CK  R S  +  +  +L 
Sbjct: 468 NPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLE 527

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
             + PD +T++ L+  LC   +I  A  L+ ++ V G E DV  +N L++GLC  G    
Sbjct: 528 KDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIED 587

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFSALNKMA 271
           AL L+  M   N      C P+ +T++T++DGL K  E   A+ + ++CM       K  
Sbjct: 588 ALLLYSNMKQSN------CLPNLVTHNTLMDGLYKARECEMASVI-WACMF------KNG 634

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F       Q   +++   + GLC   ++     LF    + G++P  +T+ IL+R +   
Sbjct: 635 F-------QPDIISYNITLKGLCSCGRISDGIALFDDALKNGILPTSITWYILVRAVLKL 687

Query: 332 GQMD 335
           G +D
Sbjct: 688 GPLD 691



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 135/286 (47%), Gaps = 30/286 (10%)

Query: 101 AKTKHYDTVLSLFKRLN-LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           AK+K  +  L  F+++  + G  P   +YN L+N F +   +      L         P+
Sbjct: 89  AKSKMPNEALDCFQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFETVGILPN 148

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
             T+  LIK    + + +EA  L   +     + DV++Y T+ING+ ++G  + AL +F+
Sbjct: 149 LQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALEVFD 208

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM     E G+V  PD + Y+ +IDG  K                  +     +  LV+ 
Sbjct: 209 EMF----ERGLV--PDVMCYNIMIDGFFKRG--------------DYVQGKEIWERLVKG 248

Query: 280 QCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
            C+  N +    +I+GLCK+ +   + E+++ + +     ++ TY+ LI GLC+ G +D 
Sbjct: 249 SCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDG 308

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
                    ++K +    +  D+ TYN L+N FC+ G++   F ++
Sbjct: 309 AVE------VYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELW 348



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 149/345 (43%), Gaps = 66/345 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA+ V++ +L  R S    T++ +L   L K  H +  L + K     G   D + Y+ 
Sbjct: 376 EEAISVWE-LLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSS 434

Query: 131 LINCFCKMGRVS-------------------------HGFVVLGRILRS-CF-------- 156
           +++   K GRV                          +GFV   ++  + CF        
Sbjct: 435 IVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKG 494

Query: 157 -TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
            +P  V++ +LI  LC   R  +A +   ++     + D+ TY+ L++GLC+     +AL
Sbjct: 495 CSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMAL 554

Query: 216 NLFEE-MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
           NL+ + +  G        EPD   ++ ++ GLC  AG                + +  Y 
Sbjct: 555 NLWRQVLVKG-------LEPDVTMHNILMHGLC-SAGKIE-------------DALLLYS 593

Query: 275 PLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
            + +  CL   +    L+DGL K  + ++A  ++  + + G  P++++YNI ++GLC+ G
Sbjct: 594 NMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNITLKGLCSCG 653

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           ++ +         LF      G+ P   T+ IL+    K+G + S
Sbjct: 654 RISDG------IALFDDALKNGILPTSITWYILVRAVLKLGPLDS 692


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 157/356 (44%), Gaps = 42/356 (11%)

Query: 52  FLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
           F+ + CK    G        +A+ V D M+  R   P V ++N+L  CL K       L+
Sbjct: 226 FIDDLCKKGRIG--------KAVKVKDIMVQ-RGLEPNVVTYNVLINCLCKEGSVREALA 276

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR--SCFTPDAVTFTSLIKD 169
           L   ++  G+ PD  TYN LI     +  +     +L  +++  +   PD VTF S+I  
Sbjct: 277 LRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHG 336

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
           LC   R+ +A ++   +   GC  ++ TYN LI G  R     +A+NL  E+ +      
Sbjct: 337 LCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSG---- 392

Query: 230 VVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
              EPD+ TYS +I+G  K  E   A       M       ++  Y PL           
Sbjct: 393 --LEPDSFTYSILINGFSKLWEVDRAEMF-LRTMTQRGIRAELFHYIPL----------- 438

Query: 288 CLIDGLCKISKLKIARELFQSLP-RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             +  LC++  ++ A  LF  +    GL  + V Y+ ++ G C  G +   K       L
Sbjct: 439 --LAALCQLGMMEQAMVLFNEMDMNCGL--DAVAYSTMMYGACKSGDIKAAKQ------L 488

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            + +   GL PD  TY+ILIN F K+G +     +  ++  S F PD   F SLIK
Sbjct: 489 LQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIK 544



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 136/290 (46%), Gaps = 22/290 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R  V ++  L   L      D  L L   +  +G+ P+   Y+ L+  +C+ GR      
Sbjct: 147 RADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSK 206

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   + R    PD + FT  I DLC + RI +A  +   +   G E +V TYN LIN LC
Sbjct: 207 VFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLC 266

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    AL L  EM +     GV   PD +TY+T+I GL   +G     G     +   
Sbjct: 267 KEGSVREALALRNEMDDK----GVA--PDVVTYNTLIAGL---SGVLEMDG-----AMGL 312

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L +M     LV    +  N   +I GLCKI +++ A  + + +   G M N+VTYN LI 
Sbjct: 313 LEEMIQGDTLVEPDVVTFN--SVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIG 370

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           G     +++   +      L   L S+GL PD +TY+ILIN F K+  V 
Sbjct: 371 GFLRVHKVNMAMN------LMSELISSGLEPDSFTYSILINGFSKLWEVD 414



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 26/214 (12%)

Query: 194 DVFTYNTLINGLCRTGHTI-VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEA 250
           D  +YN ++  LCR G  +  AL+L  +M+    E      P+A++Y+ ++ GLC  +  
Sbjct: 75  DAVSYNIVLAALCRRGGDLRQALSLLADMSR---EAHPAARPNAVSYTMVMRGLCASRRT 131

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             A  L  S  AS               V+   + +  LI GLC  ++L  A EL   + 
Sbjct: 132 DEAVALLRSMQASG--------------VRADVVTYGTLIRGLCDAAELDGALELLGEMC 177

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
            +G+ PNV+ Y+ L+RG C  G+      ++ V  +F+ ++  G+ PD+  +   I+  C
Sbjct: 178 GSGVHPNVIVYSCLLRGYCRSGR------WQDVSKVFEEMSRLGVEPDVIMFTGFIDDLC 231

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K GR+     +   ++     P+ VT+  LI  L
Sbjct: 232 KKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCL 265



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 2/124 (1%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F+ M +M      V    +++G   K+        L + +   GL PD  TY+I
Sbjct: 449 EQAMVLFNEM-DMNCGLDAVAYSTMMYGA-CKSGDIKAAKQLLQDMLDEGLAPDAVTYSI 506

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN F K+G +     VL ++  S F PD   F SLIK   AE +I +   L  ++R   
Sbjct: 507 LINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKILDLIHEMRAKN 566

Query: 191 CELD 194
             +D
Sbjct: 567 VAID 570



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 3/146 (2%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDRYTYNILINCFCKMG 139
           +  R  R  +  +  L   L +    +  + LF  +++  GL  D   Y+ ++   CK G
Sbjct: 423 MTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDMNCGL--DAVAYSTMMYGACKSG 480

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            +     +L  +L     PDAVT++ LI        + EA  +  ++   G   DV  ++
Sbjct: 481 DIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFD 540

Query: 200 TLINGLCRTGHTIVALNLFEEMANGN 225
           +LI G    G     L+L  EM   N
Sbjct: 541 SLIKGYSAEGQINKILDLIHEMRAKN 566


>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 148/344 (43%), Gaps = 35/344 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + + NI   CL K       L + +++   G  PD  TY  ++ C C   R S    +
Sbjct: 258 PDIWACNIYIDCLCKQNRLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGL 317

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +++    PD V   +LI  LC  S++ EA  L +++     EL V  YN LI+G  R
Sbjct: 318 WEEMVKMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWR 377

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--------------EAGSA 253
            G    A  +   M   NG     CEP  +TY+ +++  C               E    
Sbjct: 378 AGSIDKAYTIISFMRT-NG-----CEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGV 431

Query: 254 NFLGFSCMASFSALNK-------MAFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIARE 304
           N   +S       L K        AF    + V   C    C  LID  CK+ K+K A E
Sbjct: 432 NPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKVKKVKSALE 491

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           LF+ +   G+  + VTY  LI GL + G      +Y     LF+++    + P++  YNI
Sbjct: 492 LFKEMDYKGMQADAVTYGTLINGLFSVG------YYNLAEELFEQMLKAQIDPNVNLYNI 545

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
           +++  CK+G +     IF  ++     PD VT+ +LI  L  NS
Sbjct: 546 MLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNTLIYWLGKNS 589



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 153/354 (43%), Gaps = 36/354 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +  +  FD M+ M   R     +N   G L K   +D V   +      GL    +TY+ 
Sbjct: 172 DSVIGTFDEMV-MSGCREFGIDYNRYIGVLIKNCCFDLVEKYYGMALSKGLCLTPFTYSR 230

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I+  C+  R+     +L  + R  F+PD       I  LC ++R+ +A  +  K+R  G
Sbjct: 231 WISALCQSNRIELVEELLADMDRFGFSPDIWACNIYIDCLCKQNRLHDALQMVEKMRGKG 290

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV TY T++  LC       A+ L+EEM     + G+  +PD +    +I GLCK +
Sbjct: 291 TIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMV----KMGL--KPDVVACGALIFGLCKNS 344

Query: 251 G-------SANFLGFSCMASFSALNKM--AFY-----------FPLVRV---QCLCLNFL 287
                   ++  L  +   S S  N +   F+              +R    +   + + 
Sbjct: 345 KVEEAFELASRMLSLNIELSVSIYNALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYN 404

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L++  C I  ++ A  L   +  +G+ P+  +YN L++GLC   Q+D+       F   
Sbjct: 405 ILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLLKGLCKTHQLDKA------FAFV 458

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                 G F D+ + NILI+ FCK+ +V S   +F  +       DAVT+ +LI
Sbjct: 459 SDHMEVGGFCDIVSCNILIDAFCKVKKVKSALELFKEMDYKGMQADAVTYGTLI 512



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 1/149 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +F  M + +  +    ++  L   L    +Y+    LF+++    + P+   YNI++
Sbjct: 489 ALELFKEM-DYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIML 547

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK+G +     +   +++    PD VT+ +LI  L   SR MEA  LF  +R  G E
Sbjct: 548 HHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVE 607

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            D  T+  LINGL   G + +A  ++E M
Sbjct: 608 PDSLTFKYLINGLLDEGRSTLAYEVWEYM 636



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 32/220 (14%)

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYSTIID 244
           +R  G  L    Y  L++G  R G     +  F+EM  +G  EFG       I Y+  I 
Sbjct: 146 VRSQGVALHRSLYRILLSGYVRAGKFDSVIGTFDEMVMSGCREFG-------IDYNRYIG 198

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL---NFLCLIDGLCKISKLKI 301
            L K               F  + K   Y+ +   + LCL    +   I  LC+ +++++
Sbjct: 199 VLIKN------------CCFDLVEK---YYGMALSKGLCLTPFTYSRWISALCQSNRIEL 243

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
             EL   + R G  P++   NI I  LC   ++ +         + +++   G  PD+ T
Sbjct: 244 VEELLADMDRFGFSPDIWACNIYIDCLCKQNRLHDA------LQMVEKMRGKGTIPDVVT 297

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           Y  ++ C C   R S    ++  ++     PD V   +LI
Sbjct: 298 YTTVVGCLCNNKRFSEAVGLWEEMVKMGLKPDVVACGALI 337



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY+  I  LC      ++   E V  L   ++  G  PD++  NI I+C CK  R+    
Sbjct: 227 TYSRWISALC------QSNRIELVEELLADMDRFGFSPDIWACNIYIDCLCKQNRLHDAL 280

Query: 380 VIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            +  ++      PD VT+T+++  L  N  F +
Sbjct: 281 QMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSE 313



 Score = 42.4 bits (98), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 53/135 (39%), Gaps = 1/135 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A  +F+ ML  +   P V  +NI+   L K         +F  +    + PD  TYN 
Sbjct: 522 NLAEELFEQMLKAQID-PNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNT 580

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI    K  R      +   +      PD++TF  LI  L  E R   A  ++  +   G
Sbjct: 581 LIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYLINGLLDEGRSTLAYEVWEYMMENG 640

Query: 191 CELDVFTYNTLINGL 205
             LD      LI+ L
Sbjct: 641 IILDREVSERLISVL 655


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 151/318 (47%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   ++N++     K    D   +  +++  +G  PD  T+N LIN +CK GR+S  F 
Sbjct: 384 KPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFR 443

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  + R     ++VT  +++  LC E ++ +A  L +     G  +D  +Y TLI G  
Sbjct: 444 MMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYF 503

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G ++ A+ L++EM     E  ++  P  ITY+T+I GLC  +G  +        S   
Sbjct: 504 KDGKSVEAMKLWDEMK----EKEII--PSIITYNTMIGGLC-HSGKTD-------QSIDK 549

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           LN++     LV  +     +  +I G C+  +++ A +    + +    P++ T NIL+R
Sbjct: 550 LNEL-LESGLVPDET---TYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLR 605

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC +G +D+         LF    S G   D  TYN +I+  CK  R    F +   + 
Sbjct: 606 GLCTEGMLDK------ALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEME 659

Query: 387 PSCFTPDAVTFTSLIKIL 404
                PD  T+ +++  L
Sbjct: 660 EKKLGPDCYTYNAILSAL 677



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 145/345 (42%), Gaps = 51/345 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   S+N +   L K    +    L   +   GL P+R T+NIL++ +CK+G +     V
Sbjct: 245 PDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQV 304

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  + ++   PD  T+  LI  LC + +I EA  L  ++       DV TYNTLING   
Sbjct: 305 IDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFD 364

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
              ++    L ++M       G   +P+A+TY+ ++    KE    N        + + L
Sbjct: 365 CSSSLKGFELIDKME------GKGVKPNAVTYNVVVKWYVKEGKMDN--------AGNEL 410

Query: 268 NKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            KM  + + P       C+ F  LI+G CK  +L  A  +   + R GL  N VT N ++
Sbjct: 411 RKMEESGFSP------DCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTIL 464

Query: 326 RGLCNDGQMDETKH----------------YETVFL-------------LFKRLNSTGLF 356
             LC + ++D+                   Y T+ +             L+  +    + 
Sbjct: 465 HTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEII 524

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           P + TYN +I   C  G+          +L S   PD  T+ ++I
Sbjct: 525 PSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTII 569



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 135/314 (42%), Gaps = 61/314 (19%)

Query: 92  SFNIL-FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
           +FNIL +GC  + K  + +  L  ++     FPD  +YN +++  CK G+++    +L  
Sbjct: 214 TFNILIYGCCIENKLSEAI-GLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLD 272

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +  +   P+  TF  L+   C    + EAA +   +       DV+TYN LI GLC+ G 
Sbjct: 273 MKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGK 332

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A  L +EM N      +   PD +TY+T+I+G C          F C +S       
Sbjct: 333 IDEAFRLKDEMEN------LKLLPDVVTYNTLING-C----------FDCSSSLKGF--- 372

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                                            EL   +   G+ PN VTYN++++    
Sbjct: 373 ---------------------------------ELIDKMEGKGVKPNAVTYNVVVKWYVK 399

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
           +G+MD   +        +++  +G  PD  T+N LIN +CK GR+S  F +   +     
Sbjct: 400 EGKMDNAGNE------LRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGL 453

Query: 391 TPDAVTFTSLIKIL 404
             ++VT  +++  L
Sbjct: 454 KMNSVTLNTILHTL 467



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 117/269 (43%), Gaps = 20/269 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ ++D M   +   P + ++N + G L  +   D  +     L  +GL PD  TYN +
Sbjct: 510 EAMKLWDEM-KEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTI 568

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  +C+ G+V   F    ++++  F PD  T   L++ LC E  + +A  LF      G 
Sbjct: 569 ILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGK 628

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            +D  TYNT+I+GLC+      A +L  EM     + G    PD  TY+ I+  L  +AG
Sbjct: 629 AIDAVTYNTIISGLCKEDRFEEAFDLLAEME--EKKLG----PDCYTYNAILSALA-DAG 681

Query: 252 ----SANFLGF-----SCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKL 299
               +  F+              +LNK          Q    N   F   I+ LC   K 
Sbjct: 682 RMKEAEEFMSRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKY 741

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGL 328
           K A  + Q   + G+  +  TY  L+ GL
Sbjct: 742 KDAMHMVQESTQKGITLHKSTYISLMEGL 770


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 135/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    +    L K +  +G+ PD YTY++LI
Sbjct: 159 AQSVFD-AITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLI 217

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 218 NGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 277

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 278 PDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGSCKEG-- 329

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 330 ------DLETAFEYRXRMI----KENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 379

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P + TY ++I   C  G +       T   L K +   G  P + TYN+L+N
Sbjct: 380 GLKPEIGTYTMIINEFCKKGDV------WTGSKLMKEMQRDGYVPSVVTYNVLMN 428



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 144/310 (46%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G ++  F +   + 
Sbjct: 143 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQ 202

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +   LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVD 262

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD +TY+T+I GLCK+             S   L     
Sbjct: 263 LAMEIYKQMLSQS------LSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK- 315

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E    + +  +  + V Y  LI GLC +G
Sbjct: 316 -----------ITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEG 364

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 365 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYV 417

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 418 PSVVTYNVLM 427



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+   S P + ++N L   L K         L   +++ GL PD+ TY  LI
Sbjct: 264 AMEIYKQMLSQSLS-PDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 322

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E R ++A  +  ++   G +
Sbjct: 323 DGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 382

Query: 193 LD-----------------------------------VFTYNTLING 204
            +                                   V TYN L+NG
Sbjct: 383 PEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMNG 429



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 29/142 (20%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-------DETKHY- 340
           +++ L K+   K+    ++     G   ++  +NIL+   C +G++       D    + 
Sbjct: 111 VLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWG 170

Query: 341 ---------------------ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                                   F L K + ++G+ PD+YTY++LIN  CK  ++    
Sbjct: 171 LRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXN 230

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  +L     P+ VTFT+LI
Sbjct: 231 ELFDEMLDXGLVPNGVTFTTLI 252


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 136/296 (45%), Gaps = 34/296 (11%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N L+N   K+ RV     +    LR     D  TF  LI+ LC   +  +A  L   +  
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSG 234

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           FGCE D+ TYNTLI G C++     A  +F+++ +G+     VC PD +TY+++I G CK
Sbjct: 235 FGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGS-----VCSPDVVTYTSMISGYCK 289

Query: 249 -----EAGSA----------------NFLGFSCMASFSALNKMAFYFPLVRVQCL--CLN 285
                EA S                 N L      +   L        ++   C    + 
Sbjct: 290 AGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVT 349

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  LIDG C++ ++     L++ +   G+ PN  TY+ILI  LCN+ ++ + +       
Sbjct: 350 FTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARE------ 403

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L  +L S  + P  + YN +I+ FCK G+V+   VI   +      PD +TFT LI
Sbjct: 404 LLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILI 459



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 156/333 (46%), Gaps = 42/333 (12%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + LN+R S     ++N+L   L K   +D    +F+ +   G+ P+      L++ F + 
Sbjct: 95  FKLNIRHS---FWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEK 151

Query: 139 GRVSHGFVVLGRILRSCFTPDA--VTFTSLIKDLCAESRIMEAAALFTK-LRVFGCELDV 195
           G++     +L   L+S F  +   +   SL+  L    R+ +A  LF + LR   C  D 
Sbjct: 152 GKLHFATALL---LQS-FEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCN-DT 206

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            T+N LI GLC  G    AL L   M+      G  CEPD +TY+T+I G CK       
Sbjct: 207 KTFNILIRGLCGVGKAEKALELLGVMS------GFGCEPDIVTYNTLIQGFCKS------ 254

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSLPR 311
                    + LNK +  F  V+   +C    + +  +I G CK  K++ A  L   + R
Sbjct: 255 ---------NELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLR 305

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+ P  VT+N+L+ G    G+M   +      + F      G FPD+ T+  LI+ +C+
Sbjct: 306 LGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISF------GCFPDVVTFTSLIDGYCR 359

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +G+VS GF ++  +      P+A T++ LI  L
Sbjct: 360 VGQVSQGFRLWEEMNARGMFPNAFTYSILINAL 392



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 150/334 (44%), Gaps = 26/334 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ +FD  L  +      T FNIL   L      +  L L   ++  G  PD  TYN L
Sbjct: 189 DAMKLFDEHLRFQSCNDTKT-FNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTL 247

Query: 132 INCFCKMGRVSHGFVVLGRILR-SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           I  FCK   ++    +   +   S  +PD VT+TS+I   C   ++ EA++L   +   G
Sbjct: 248 IQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLG 307

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
                 T+N L++G  + G  + A    EE+      FG  C PD +T++++IDG C+  
Sbjct: 308 IYPTNVTFNVLVDGYAKAGEMLTA----EEIRGKMISFG--CFPDVVTFTSLIDGYCRVG 361

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             +   GF      +A       FP          +  LI+ LC  ++L  AREL   L 
Sbjct: 362 QVSQ--GFRLWEEMNARG----MFPNA------FTYSILINALCNENRLLKARELLGQLA 409

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
              ++P    YN +I G C  G+++E        ++ + +      PD  T+ ILI   C
Sbjct: 410 SKDIIPQPFMYNPVIDGFCKAGKVNEAN------VIVEEMEKKKCKPDKITFTILIIGHC 463

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             GR+     IF +++    +PD +T +SL+  L
Sbjct: 464 MKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCL 497



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 135/297 (45%), Gaps = 31/297 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL-FPDRYTYNILINCFCKMGRVSHGF 145
            P + ++N L     K+   +    +FK +    +  PD  TY  +I+ +CK G++    
Sbjct: 238 EPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREAS 297

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +L  +LR    P  VTF  L+        ++ A  +  K+  FGC  DV T+ +LI+G 
Sbjct: 298 SLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGY 357

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---GSANFLGFSCMA 262
           CR G       L+EEM N  G F     P+A TYS +I+ LC E     +   LG   +A
Sbjct: 358 CRVGQVSQGFRLWEEM-NARGMF-----PNAFTYSILINALCNENRLLKARELLGQ--LA 409

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
           S   + +   Y P+             IDG CK  K+  A  + + + +    P+ +T+ 
Sbjct: 410 SKDIIPQPFMYNPV-------------IDGFCKAGKVNEANVIVEEMEKKKCKPDKITFT 456

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           ILI G C  G+M     +E V + F ++ + G  PD  T + L++C  K G     +
Sbjct: 457 ILIIGHCMKGRM-----FEAVSI-FHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAY 507



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 11/172 (6%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F  L     +         L++ +N  G+FP+ +TY+ILIN  C   R+     +
Sbjct: 345 PDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKAREL 404

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG++      P    +  +I   C   ++ EA  +  ++    C+ D  T+  LI G C 
Sbjct: 405 LGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCM 464

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID-----GLCKEAGSAN 254
            G    A+++F +M        + C PD IT S+++      G+ KEA   N
Sbjct: 465 KGRMFEAVSIFHKMV------AIGCSPDKITVSSLLSCLLKAGMAKEAYHLN 510



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 67/137 (48%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +N R   P   +++IL   L           L  +L    + P  + YN +I+ FCK G+
Sbjct: 373 MNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGK 432

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V+   V++  + +    PD +TFT LI   C + R+ EA ++F K+   GC  D  T ++
Sbjct: 433 VNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSS 492

Query: 201 LINGLCRTGHTIVALNL 217
           L++ L + G    A +L
Sbjct: 493 LLSCLLKAGMAKEAYHL 509


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 149/310 (48%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + + G +  GF +   +L
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXML 185

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 245

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             +   +++M+ 
Sbjct: 246 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKG--------DLKQAHHLIDEMS- 290

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LI+G CK   L  A E  + + +  +  + V Y  LI G C +G
Sbjct: 291 ---VKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEG 347

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 348 RSVDAEK-------MLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHV 400

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 401 PSVVTYNVLM 410



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 133/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 142 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLI 200

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 201 NGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 260

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+I+G CKE   
Sbjct: 261 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG------LKPDKITYTTLINGCCKEG-- 312

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                    ++F    +M        ++   + +  LI G C+  +   A ++ + +   
Sbjct: 313 ------DLDSAFEHRKRMI----QENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSV 362

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G +           L K +   G  P + TYN+L+N
Sbjct: 363 GLKPDARTYTMIINEFCKXGDVWXGSK------LLKEMQRDGHVPSVVTYNVLMN 411



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 111/241 (46%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 190 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 249

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L    +PD +T+ +LI  LC +  + +A  L  ++ V G + D  TY TLING C
Sbjct: 250 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCC 309

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I G C+E  S +            
Sbjct: 310 KEGDLDSAFEHRKRMIQEN------IRLDEVAYTALISGXCQEGRSVD------------ 351

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G +P+VVTYN+L+ 
Sbjct: 352 AEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMN 411

Query: 327 G 327
           G
Sbjct: 412 G 412



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+   S P + ++N L   L K         L   +++ GL PD+ TY  LI
Sbjct: 247 AMEIYKQMLSQSLS-PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 305

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK G +   F    R+++     D V +T+LI   C E R ++A  +  ++   G +
Sbjct: 306 NGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLK 365

Query: 193 LD-----------------------------------VFTYNTLING 204
            D                                   V TYN L+NG
Sbjct: 366 PDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 94  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 147

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + + G +  GF +   +L S   PD  T++ LI
Sbjct: 148 AITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLI 200


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 136/280 (48%), Gaps = 23/280 (8%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P   TY ILI+C C +G ++  F  LG+I+++    +A++FT +++ LCAE R  +A  +
Sbjct: 11  PTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCAEKRTSDAMNI 70

Query: 183 FTKLR-VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
             +     GC  DVF+Y  L+ GLC       A++L   MA    E G  C P+ ++Y+T
Sbjct: 71  VIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMA----EDGDHCPPNVVSYTT 126

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +I G  KE          C         +    P   V C       +IDGLCK+  +  
Sbjct: 127 VIHGFFKEDEVGKAYTLFC-------EMLDRGIPPDVVTC-----NSIIDGLCKVQAMDK 174

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A E+ + +    +MP+  TYN L+ G  + GQ+ E         + K+++  G  P+  T
Sbjct: 175 AEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEA------VRILKQMSRHGQPPNGVT 228

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           Y++LI+C CK G  +    I   ++ S   P+  T+  L+
Sbjct: 229 YSMLIDCLCKFGGHTEAREILNSMIQSRGNPNVATYGGLL 268



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 137/314 (43%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T++N L      +      + + K+++  G  P+  TY++LI+C CK G  +    +
Sbjct: 189 PDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREI 248

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +++S   P+  T+  L+     +  ++E   L   +   G   D   +N  I    +
Sbjct: 249 LNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVK 308

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A+  F +M     + G++  PD I+Y T+IDGLCK       +   C      L
Sbjct: 309 CGRLDEAMLTFNKMR----QQGLM--PDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGL 362

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +      P + V      F  LI G     K + A ELF  +   G+ P VV +  +I  
Sbjct: 363 S------PDIVV------FTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDK 410

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           L  +G++ E K       LF  +    + P++ +YN +I+ +   G++     +   +L 
Sbjct: 411 LFKEGKVTEAK------TLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLS 464

Query: 388 SCFTPDAVTFTSLI 401
               P+AVTF +L+
Sbjct: 465 VGLKPNAVTFNTLL 478



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 137/331 (41%), Gaps = 23/331 (6%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+  +     K        +LF  +   G+ PD  T N +I+  CK+  +     V
Sbjct: 119 PNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEV 178

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++      PD  T+ SL+    +  ++ EA  +  ++   G   +  TY+ LI+ LC+
Sbjct: 179 LRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCK 238

Query: 208 TGHTIVALNLFEEMANGNGE----------FGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
            G    A  +   M    G            G   + D +  + +ID + +     +   
Sbjct: 239 FGGHTEAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHI 298

Query: 258 FSCM----ASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLP 310
           F+           L++    F  +R Q L    +++  +IDGLCKI +L  A   F  + 
Sbjct: 299 FNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMI 358

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL P++V +  LI G    G+      +E    LF  +   G+ P +  +  +I+   
Sbjct: 359 DDGLSPDIVVFTNLIHGFSMYGK------WEKAEELFYEMMDRGIRPTVVVFTTMIDKLF 412

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G+V+    +F  +  +   P+ V++ ++I
Sbjct: 413 KEGKVTEAKTLFDLMPIASVKPNVVSYNAII 443



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 130/338 (38%), Gaps = 67/338 (19%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + + M+  R   P V ++  L    A       + +L   +   G+ PD + +NI 
Sbjct: 244 EAREILNSMIQSR-GNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQ 302

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  + K GR+    +   ++ +    PD +++ ++I  LC   R+  A + F ++   G 
Sbjct: 303 IYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGL 362

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D+  +  LI+G    G    A  LF EM +          P  + ++T+ID L KE  
Sbjct: 363 SPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRG------IRPTVVVFTTMIDKLFKEG- 415

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                         K+  A+ LF  +P 
Sbjct: 416 ----------------------------------------------KVTEAKTLFDLMPI 429

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDET-------------KHYETVFLLFKRLNSTGLFPD 358
           A + PNVV+YN +I G    G++DE               +  T   L   + S GL PD
Sbjct: 430 ASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLLDDMLSMGLKPD 489

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
           + T N LI+  C+ GR+     +F  +L      D VT
Sbjct: 490 VATCNTLIDSCCEDGRIEDVLTLFREMLSKAAKTDTVT 527



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 16/155 (10%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           Y +  R  RP V  F  +   L K        +LF  + +  + P+  +YN +I+ +   
Sbjct: 390 YEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLA 449

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G++     +L  +L     P+AVTF +L+ D+ +                 G + DV T 
Sbjct: 450 GKLDEVLKLLDDMLSVGLKPNAVTFNTLLDDMLS----------------MGLKPDVATC 493

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
           NTLI+  C  G     L LF EM +   +   V E
Sbjct: 494 NTLIDSCCEDGRIEDVLTLFREMLSKAAKTDTVTE 528



 Score = 39.3 bits (90), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           R  S  + P   TY ILI+C C +G ++  F   G+I+ +    +A++FT +++ L
Sbjct: 3   RAGSKKVAPTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTL 58


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 154/328 (46%), Gaps = 34/328 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V + NI+   L K K  D   S+F+ +N     PD  T+  LI+   K GRV   + +
Sbjct: 440 PNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRL 499

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++L S   P+AV +TSLIK      R  +   +F ++   GC  D+   N  ++ + +
Sbjct: 500 YEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFK 559

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G T     LFEE+ +     G +  PD ++YS +I GL K             A F+  
Sbjct: 560 AGETGKGRALFEEIKSR----GFI--PDVMSYSILIHGLVK-------------AGFARE 600

Query: 268 NKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
               FY   ++ Q   L+   +   IDG CK  K+  A +L + +   G  P VVTY  +
Sbjct: 601 TYELFY--AMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSV 658

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I GL    ++DE       ++LF+   S GL  ++  Y+ LI+ F K+GR+   ++I   
Sbjct: 659 IDGLAKIDRLDE------AYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEE 712

Query: 385 ILPSCFTPDAVTFT----SLIKILEINS 408
           ++    TP+  T+     +L+K  EIN 
Sbjct: 713 LMQKGLTPNVYTWNCLLDALVKAEEINE 740



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 151/352 (42%), Gaps = 38/352 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +++ ML+     P    +  L     K    +    +FK +   G  PD    N 
Sbjct: 494 DDAYRLYEQMLD-SDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNA 552

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            ++C  K G    G  +   I    F PD ++++ LI  L       E   LF  ++  G
Sbjct: 553 YMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQG 612

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C LD   YNT I+G C++G    A  L EEM           +P  +TY ++IDGL K  
Sbjct: 613 CVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGR------QPTVVTYGSVIDGLAK-- 664

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQ 307
                           L++    F   +   L LN   +  LIDG  K+ ++  A  + +
Sbjct: 665 -------------IDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIME 711

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            L + GL PNV T+N L+  L    +++E        + F+ + +    P+  TY+ILIN
Sbjct: 712 ELMQKGLTPNVYTWNCLLDALVKAEEINE------ALVCFQNMKNLKGTPNHITYSILIN 765

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQ 412
             C++ + +  FV +  +      P+ +T+T++I        I E +S F +
Sbjct: 766 GLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFER 817



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 161/353 (45%), Gaps = 38/353 (10%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           G ++S+  ++ +    + +        V  F  +    A+    D  LSL   +    L 
Sbjct: 206 GALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLH 265

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
            D   YN+ I+CF K G+V   +     I      PD VT+TS+I  LC  +R+ EA  +
Sbjct: 266 ADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEI 325

Query: 183 FTKL---RVFGCELDVFTYNTLINGLCRTGHTIVALNLFE-EMANGNGEFGVVCEPDAIT 238
           F ++   R   C    + YNT+I G    G    A +L E + A G       C P  I 
Sbjct: 326 FEQMEQNRNVPC---AYAYNTMIMGYGSAGKFDEAYSLLERQKARG-------CIPSVIA 375

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+ I+  L    G    LG   + +F  + K A   P +        +  LID LCK  +
Sbjct: 376 YNCILTCL----GKKGRLG-EALRTFEEMKKDA--APNLST------YNVLIDMLCKAGE 422

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           ++ A ++  ++  AGL PNV+T NI+I  LC   ++DE         +F+ +N     PD
Sbjct: 423 VEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACS------IFEGMNHKICSPD 476

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411
             T+  LI+   K GRV   + ++ ++L S   P+AV +TSLIK     SFF+
Sbjct: 477 EVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIK-----SFFK 524



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 137/328 (41%), Gaps = 26/328 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++IL   L K         LF  +   G   D + YN  I+ FCK G+V+  + +
Sbjct: 580 PDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQL 639

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P  VT+ S+I  L    R+ EA  LF + +  G EL+V  Y++LI+G  +
Sbjct: 640 LEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGK 699

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-EAGSANFLGFSCMASFSA 266
            G    A  + EE+            P+  T++ ++D L K E  +   + F  M +   
Sbjct: 700 VGRIDEAYLIMEELMQKG------LTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKG 753

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                            + +  LI+GLC++ K   A   +Q + + GL PN +TY  +I 
Sbjct: 754 TPNH-------------ITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIA 800

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL   G + E         LF+R  + G  PD  +YN +I       R    + IF    
Sbjct: 801 GLAKAGNIAEASS------LFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETR 854

Query: 387 PSCFTPDAVTFTSLIKILEINSFFRQVA 414
                    T  +L+  L+ +    Q A
Sbjct: 855 MKGCNIHTKTCIALLDALQKDECLEQAA 882



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 142/351 (40%), Gaps = 52/351 (14%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N+   C  K    D     F  +   GL PD  TY  +I   CK  R+     +  ++ 
Sbjct: 271 YNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQME 330

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           ++   P A  + ++I    +  +  EA +L  + +  GC   V  YN ++  L + G   
Sbjct: 331 QNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLG 390

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM-- 270
            AL  FEEM            P+  TY+ +ID LCK AG          A+F   + M  
Sbjct: 391 EALRTFEEMKKD-------AAPNLSTYNVLIDMLCK-AGEVE-------AAFKVRDAMKE 435

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
           A  FP V    + +N   +ID LCK  KL  A  +F+ +      P+ VT+  LI GL  
Sbjct: 436 AGLFPNV----MTVNI--MIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGK 489

Query: 331 DGQMDET-KHYETVF----------------------------LLFKRLNSTGLFPDLYT 361
            G++D+  + YE +                              +FK +   G  PDL  
Sbjct: 490 QGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRL 549

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            N  ++C  K G    G  +F  I    F PD ++++ LI  L    F R+
Sbjct: 550 LNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARE 600



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 159/385 (41%), Gaps = 63/385 (16%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A+  F +            +++ L   +AK   +D    +   +++ G  P   T   
Sbjct: 109 NQAISYFRWTERKTDQALCPEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIE 168

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA--ESRIMEAAALFTKLRV 188
           LI    K  ++  GF ++  + +  F P    +T+LI  L +  ES IM    LF +++ 
Sbjct: 169 LILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIM--LTLFHQMQE 226

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG------------------NGEFGV 230
            G E+ V  + T+I    R G    AL+L +EM +                    G+  +
Sbjct: 227 LGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDM 286

Query: 231 VCE-----------PDAITYSTIIDGLCK-----------EAGSAN------FLGFSCMA 262
             +           PD +TY+++I  LCK           E    N      +   + + 
Sbjct: 287 AWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIM 346

Query: 263 SFSALNKMAFYFPLVRVQ----CL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
            + +  K    + L+  Q    C+   + + C++  L K  +L  A   F+ + +    P
Sbjct: 347 GYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDA-AP 405

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           N+ TYN+LI  LC  G++      E  F +   +   GLFP++ T NI+I+  CK  ++ 
Sbjct: 406 NLSTYNVLIDMLCKAGEV------EAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLD 459

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
               IF  +     +PD VTF SLI
Sbjct: 460 EACSIFEGMNHKICSPDEVTFCSLI 484



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEAL  F  M N++ + P   +++IL   L + + ++     ++ +   GL P+  TY  
Sbjct: 739 NEALVCFQNMKNLKGT-PNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTT 797

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I    K G ++    +  R   +   PD+ ++ ++I+ L    R MEA  +F + R+ G
Sbjct: 798 MIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKG 857

Query: 191 CELDVFTYNTLINGLCR 207
           C +   T   L++ L +
Sbjct: 858 CNIHTKTCIALLDALQK 874


>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
 gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g39230, mitochondrial; AltName: Full=Protein LATERAL
           ORGAN JUNCTION; Flags: Precursor
 gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
 gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
          Length = 867

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 158/331 (47%), Gaps = 25/331 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A   F  M+  +   P V  +N +     + K+ D   S+F  +   GL P+ +TY+IL
Sbjct: 466 DAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSIL 525

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVFG 190
           I+ F K     + + V+ ++  S F  + V + ++I  LC   +  +A  +   L +   
Sbjct: 526 IDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKR 585

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             +   +YN++I+G  + G T  A+  + EM+  NG+      P+ +T++++I+G CK  
Sbjct: 586 YSMSCTSYNSIIDGFVKVGDTDSAVETYREMSE-NGK-----SPNVVTFTSLINGFCK-- 637

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             +N +  +         +M      + ++     +  LIDG CK + +K A  LF  LP
Sbjct: 638 --SNRMDLAL--------EMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELP 687

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GLMPNV  YN LI G  N G+MD          L+K++ + G+  DL+TY  +I+   
Sbjct: 688 ELGLMPNVSVYNSLISGFRNLGKMD------AAIDLYKKMVNDGISCDLFTYTTMIDGLL 741

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G ++    ++  +L     PD +    L+
Sbjct: 742 KDGNINLASDLYSELLDLGIVPDEILHMVLV 772



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 148/355 (41%), Gaps = 38/355 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +++ M+ +  +   VT+  ++   L + K  + V  +F+R+   G  PD   +++
Sbjct: 221 DEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAV-KIFRRVMSRGAEPDGLLFSL 279

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAV-TFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +   CK   +     +L  +      P +  T+TS+I     E  + EA  +  ++  F
Sbjct: 280 AVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGF 339

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G  + V    +L+NG C+      AL+LF  M     E G+   PD + +S +++  CK 
Sbjct: 340 GIPMSVIAATSLVNGYCKGNELGKALDLFNRME----EEGLA--PDKVMFSVMVEWFCKN 393

Query: 250 AGSANFLGF---------------------SCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
                 + F                      C+ + S    +  +        +   F+C
Sbjct: 394 MEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFE-SWIAHGFMC 452

Query: 289 --LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             +    CK  K+  A    + + + G+ PNVV YN ++   C    MD  +       +
Sbjct: 453 NKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARS------I 506

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           F  +   GL P+ +TY+ILI+ F K     + + +  ++  S F  + V + ++I
Sbjct: 507 FSEMLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTII 561



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 18/240 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F  L     K+   D  L +   +    L  D   Y  LI+ FCK   +   + +
Sbjct: 623 PNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTL 682

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      P+   + SLI       ++  A  L+ K+   G   D+FTY T+I+GL +
Sbjct: 683 FSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLK 742

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+  +A +L+ E+     + G+V  PD I +  +++GL K+              F   
Sbjct: 743 DGNINLASDLYSELL----DLGIV--PDEILHMVLVNGLSKK------------GQFLKA 784

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +KM        V    L +  +I G  +   L  A  L   +   G++ +   +N+L+ G
Sbjct: 785 SKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLVSG 844



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/318 (19%), Positives = 112/318 (35%), Gaps = 72/318 (22%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR-------YTYNILINCFCKMGRVSHG 144
           +FN L     + K  D  +  F      GL  DR       Y  N+L +   +   +   
Sbjct: 171 AFNYLLNAYIRNKRMDYAVDCF------GLMVDRKVVPFVPYVNNVL-SSLVRSNLIDEA 223

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             +  +++      D VT   L++    E +  EA  +F ++   G E D   ++  +  
Sbjct: 224 KEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMSRGAEPDGLLFSLAVQA 283

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
            C+T   ++AL+L  EM    G+ GV    +  TY+++I    KE               
Sbjct: 284 ACKTPDLVMALDLLREM---RGKLGVPASQE--TYTSVIVAFVKEGNMEE---------- 328

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
                       VRV    + F                          G+  +V+    L
Sbjct: 329 -----------AVRVMDEMVGF--------------------------GIPMSVIAATSL 351

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + G C   ++ +         LF R+   GL PD   +++++  FCK   +      + R
Sbjct: 352 VNGYCKGNELGKA------LDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKAIEFYMR 405

Query: 385 ILPSCFTPDAVTFTSLIK 402
           +      P +V   ++I+
Sbjct: 406 MKSVRIAPSSVLVHTMIQ 423


>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 149/335 (44%), Gaps = 37/335 (11%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S+NIL   L      D  L     +   G+ PD  TYN L   F  +G +S    V+ ++
Sbjct: 308 SYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKM 367

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           L     PD VT+T+LI   C    I EA  L  +    G +L+V  YN L++ LC+ G  
Sbjct: 368 LLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRI 427

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE---------------------- 249
             AL LF+EM        +  EPD I YS +I GLCKE                      
Sbjct: 428 EEALTLFDEMET------LRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHH 481

Query: 250 -AGSANFLGFSCMASFS-ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
            A  A  LG     + S A N    +  +  ++ + L +  +IDG  ++  +  A +L+ 
Sbjct: 482 FAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVL-YNIMIDGYVRLDGIAEAMQLYY 540

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +   G+ P+VVT+N LI G C  G + E +    V  L       GL P + TY  L+N
Sbjct: 541 KMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRL------KGLVPSVVTYTTLMN 594

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            +C++G +   F     +  +   P  VT+T LIK
Sbjct: 595 AYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIK 629



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 133/319 (41%), Gaps = 25/319 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ ++  M+  R   P V +FN L     +         + + + L GL P   TY  L
Sbjct: 534 EAMQLYYKMIE-RGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTL 592

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N +C++G +   F  L  +  +   P  VT+T LIK LC ++++ E+  L   +   G 
Sbjct: 593 MNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGL 652

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D  TYNT+I   C+      AL L+  M   N      C+P  +TY  +I+ LC    
Sbjct: 653 LPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHN------CDPTQVTYKVLINALC---- 702

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                          +++M        +      ++ +I   C   ++  A   F  +  
Sbjct: 703 --------IFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLA 754

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G + ++  Y+ +I  LC  G + E K++  + L      S G+ PD      ++N F +
Sbjct: 755 KGFVISIRDYSAVINRLCKRGLITEAKYFFVMML------SEGVTPDPEICKTVLNAFHQ 808

Query: 372 IGRVSSGFVIFGRILPSCF 390
            G  SS F     ++ S F
Sbjct: 809 QGNNSSVFEFLAMVVKSGF 827



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 139/332 (41%), Gaps = 25/332 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL +FD M  +R   P    ++IL   L K         L++++ L   FP  +    
Sbjct: 428 EEALTLFDEMETLRL-EPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRA 486

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++    K G +S          R     D V +  +I        I EA  L+ K+   G
Sbjct: 487 VLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERG 546

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
               V T+NTLING CR G  + A  + E +       G+V  P  +TY+T+++  C E 
Sbjct: 547 ITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLK----GLV--PSVVTYTTLMNAYC-EV 599

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G+   +       F  L++M        V    + +  LI GLC+ +K+  + +L + + 
Sbjct: 600 GNMQEM-------FHFLHEM----EANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMY 648

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL+P+ VTYN +I+  C   ++ +      + LL          P   TY +LIN  C
Sbjct: 649 AKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHN------CDPTQVTYKVLINALC 702

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             G +     +   I     T    T+ ++IK
Sbjct: 703 IFGDLKDVDRMVVSIEDRNITLKKXTYMTIIK 734



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 139/332 (41%), Gaps = 38/332 (11%)

Query: 71  NEALCVFDYM--LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           ++AL V   M  LN + S P   S       L   +H D +  ++  + ++G      T 
Sbjct: 187 HDALFVIAKMKDLNFQASVPTYNSL------LHNMRHTDIMWDVYNEIKVSGAPQSECTT 240

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           +ILI+  C+  ++      L         P  V+  +++   C    I  A + F  +  
Sbjct: 241 SILIHGLCEQSKLEDAISFLHDS-NKVVGPSIVSINTIMSKFCKVGLIDVARSXFCLMVK 299

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   D F+YN L++GLC  G    AL   ++M     + GV  EPD +TY+T+      
Sbjct: 300 NGLLHDSFSYNILLHGLCVAGSMDEALGFTDDME----KHGV--EPDVVTYNTLAK---- 349

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                   GF  +   S   K+     L  +    + +  LI G C++  ++ A +L Q 
Sbjct: 350 --------GFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQE 401

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
               G   NV+ YN+L+  LC  G+++E         LF  + +  L PD   Y+ILI+ 
Sbjct: 402 TLSRGFKLNVIFYNMLLSCLCKVGRIEEA------LTLFDEMETLRLEPDFIVYSILIHG 455

Query: 369 FCKIGRVSSGFVIF-----GRILPSCFTPDAV 395
            CK G V   + ++      R  P  F   AV
Sbjct: 456 LCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAV 487



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 122/307 (39%), Gaps = 93/307 (30%)

Query: 166 LIKDLCA-----ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220
           L+ D+ A        I +A  +  K++    +  V TYN+L++ +    HT +  +++ E
Sbjct: 171 LVWDMLAFAYSRHEMIHDALFVIAKMKDLNFQASVPTYNSLLHNM---RHTDIMWDVYNE 227

Query: 221 MANGNGEFGVVCEPDA-ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           +        V   P +  T S +I GLC+++   + + F         NK      +V  
Sbjct: 228 IK-------VSGAPQSECTTSILIHGLCEQSKLEDAISF-----LHDSNK------VVGP 269

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET-- 337
             + +N   ++   CK+  + +AR  F  + + GL+ +  +YNIL+ GLC  G MDE   
Sbjct: 270 SIVSIN--TIMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALG 327

Query: 338 ------KH--------YETV---FLLF----------KRLNSTGLFPDLYT--------- 361
                 KH        Y T+   FLL           +++   GL PDL T         
Sbjct: 328 FTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHC 387

Query: 362 --------------------------YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
                                     YN+L++C CK+GR+     +F  +      PD +
Sbjct: 388 QMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFI 447

Query: 396 TFTSLIK 402
            ++ LI 
Sbjct: 448 VYSILIH 454


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 136/296 (45%), Gaps = 34/296 (11%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N L+N   K+ RV     +    LR     D  TF  LI+ LC   +  +A  L   +  
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSG 234

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           FGCE D+ TYNTLI G C++     A  +F+++ +G+     VC PD +TY+++I G CK
Sbjct: 235 FGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGS-----VCSPDVVTYTSMISGYCK 289

Query: 249 -----EAGSA----------------NFLGFSCMASFSALNKMAFYFPLVRVQCL--CLN 285
                EA S                 N L      +   L        ++   C    + 
Sbjct: 290 AGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVT 349

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  LIDG C++ ++     L++ +   G+ PN  TY+ILI  LCN+ ++ + +       
Sbjct: 350 FTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARE------ 403

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L  +L S  + P  + YN +I+ FCK G+V+   VI   +      PD +TFT LI
Sbjct: 404 LLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILI 459



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 156/333 (46%), Gaps = 42/333 (12%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + LN+R S     ++N+L   L K   +D    +F+ +   G+ P+      L++ F + 
Sbjct: 95  FKLNIRHS---FWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEK 151

Query: 139 GRVSHGFVVLGRILRSCFTPDA--VTFTSLIKDLCAESRIMEAAALFTK-LRVFGCELDV 195
           G++     +L   L+S F  +   +   SL+  L    R+ +A  LF + LR   C  D 
Sbjct: 152 GKLHFATALL---LQS-FEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCN-DT 206

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            T+N LI GLC  G    AL L   M+      G  CEPD +TY+T+I G CK       
Sbjct: 207 KTFNILIRGLCGVGKAEKALELLGVMS------GFGCEPDIVTYNTLIQGFCKS------ 254

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSLPR 311
                    + LNK +  F  V+   +C    + +  +I G CK  K++ A  L   + R
Sbjct: 255 ---------NELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLR 305

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+ P  VT+N+L+ G    G+M   +      + F      G FPD+ T+  LI+ +C+
Sbjct: 306 LGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISF------GCFPDVVTFTSLIDGYCR 359

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +G+VS GF ++  +      P+A T++ LI  L
Sbjct: 360 VGQVSQGFRLWEEMNARGMFPNAFTYSILINAL 392



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 150/334 (44%), Gaps = 26/334 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ +FD  L  +      T FNIL   L      +  L L   ++  G  PD  TYN L
Sbjct: 189 DAMKLFDEHLRFQSCNDTKT-FNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTL 247

Query: 132 INCFCKMGRVSHGFVVLGRILR-SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           I  FCK   ++    +   +   S  +PD VT+TS+I   C   ++ EA++L   +   G
Sbjct: 248 IQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLG 307

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
                 T+N L++G  + G  + A    EE+      FG  C PD +T++++IDG C+  
Sbjct: 308 IYPTNVTFNVLVDGYAKAGEMLTA----EEIRGKMISFG--CFPDVVTFTSLIDGYCRVG 361

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
             +   GF      +A       FP          +  LI+ LC  ++L  AREL   L 
Sbjct: 362 QVSQ--GFRLWEEMNARG----MFPNA------FTYSILINALCNENRLLKARELLGQLA 409

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
              ++P    YN +I G C  G+++E        ++ + +      PD  T+ ILI   C
Sbjct: 410 SKDIIPQPFMYNPVIDGFCKAGKVNEAN------VIVEEMEKKKCKPDKITFTILIIGHC 463

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             GR+     IF +++    +PD +T +SL+  L
Sbjct: 464 MKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCL 497



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 135/297 (45%), Gaps = 31/297 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL-FPDRYTYNILINCFCKMGRVSHGF 145
            P + ++N L     K+   +    +FK +    +  PD  TY  +I+ +CK G++    
Sbjct: 238 EPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREAS 297

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +L  +LR    P  VTF  L+        ++ A  +  K+  FGC  DV T+ +LI+G 
Sbjct: 298 SLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGY 357

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---GSANFLGFSCMA 262
           CR G       L+EEM N  G F     P+A TYS +I+ LC E     +   LG   +A
Sbjct: 358 CRVGQVSQGFRLWEEM-NARGMF-----PNAFTYSILINALCNENRLLKARELLGQ--LA 409

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
           S   + +   Y P+             IDG CK  K+  A  + + + +    P+ +T+ 
Sbjct: 410 SKDIIPQPFMYNPV-------------IDGFCKAGKVNEANVIVEEMEKKKCKPDKITFT 456

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           ILI G C  G+M     +E V + F ++ + G  PD  T + L++C  K G     +
Sbjct: 457 ILIIGHCMKGRM-----FEAVSI-FHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAY 507



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 11/172 (6%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F  L     +         L++ +N  G+FP+ +TY+ILIN  C   R+     +
Sbjct: 345 PDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKAREL 404

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG++      P    +  +I   C   ++ EA  +  ++    C+ D  T+  LI G C 
Sbjct: 405 LGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCM 464

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID-----GLCKEAGSAN 254
            G    A+++F +M        + C PD IT S+++      G+ KEA   N
Sbjct: 465 KGRMFEAVSIFHKMV------AIGCSPDKITVSSLLSCLLKAGMAKEAYHLN 510



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 67/137 (48%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +N R   P   +++IL   L           L  +L    + P  + YN +I+ FCK G+
Sbjct: 373 MNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGK 432

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V+   V++  + +    PD +TFT LI   C + R+ EA ++F K+   GC  D  T ++
Sbjct: 433 VNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSS 492

Query: 201 LINGLCRTGHTIVALNL 217
           L++ L + G    A +L
Sbjct: 493 LLSCLLKAGMAKEAYHL 509


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 147/351 (41%), Gaps = 59/351 (16%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR------ 140
            P + S+N +   LA     D     F  +   G  PD   +  LI+ FCK G+      
Sbjct: 4   EPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHK 63

Query: 141 ------------------VSHGFVVLGRILRSCF---TP----DAVTFTSLIKDLCAESR 175
                             V HG+   G +    F   TP    D +++T++IK L    R
Sbjct: 64  LLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKR 123

Query: 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
           I EA  LF +L+  GC  +V  Y  +I+GL + G     L  FEEM+      G  C P 
Sbjct: 124 IDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMS------GSSCVPT 177

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGL 293
             TY+ +IDGLCK    A  L  +C            +  +V+  C+   + +  LIDG 
Sbjct: 178 RTTYTVVIDGLCK----AQMLPDAC----------KVFEQMVQKGCVPDTITYTTLIDGF 223

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
            K SK+  AR+L   +   G  P  VTY  ++ G C    ++E K       +  ++   
Sbjct: 224 SKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKE------VIAQMRER 277

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G  P L+ +  L++ +   GR    + +   +      PD + +TSLI +L
Sbjct: 278 GCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLL 328



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 149/331 (45%), Gaps = 26/331 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  VF+ M+  +   P   ++  L    +K    D    L   +   G  P   TY  +
Sbjct: 196 DACKVFEQMVQ-KGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSI 254

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ FCK+  ++    V+ ++      P    FTSL+    ++ R  EA  + T++   GC
Sbjct: 255 VHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGC 314

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV  Y +LI+ L  TG    A ++F+ M          C PDA+TY TII        
Sbjct: 315 APDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG------CAPDALTYGTIIQ------- 361

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                 FS + +  A  ++        V   C  +  L+DG  K+ ++  A  ++  +  
Sbjct: 362 -----NFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVA 416

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR-LNSTGLFPDLYTYNILINCFC 370
           +G+ PN VT+N+L+ GL  DG+ D        F LFK  L    + P L +Y ILI+   
Sbjct: 417 SGIKPNAVTFNVLMHGLFKDGKTDR------AFSLFKEMLEKEEVPPTLVSYTILIDGLG 470

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K GRVS  F+ F  ++     P+  T+TSLI
Sbjct: 471 KAGRVSEAFLQFQEMIDRGIIPECHTYTSLI 501



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 128/297 (43%), Gaps = 27/297 (9%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P V  +  L   L  T        +F  +   G  PD  TY  +I  F K+G 
Sbjct: 309 MTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGN 368

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V     +L  + +S   PD   + SL+       R+ +A  ++ ++   G + +  T+N 
Sbjct: 369 VEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNV 428

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG--SANFLGF 258
           L++GL + G T  A +LF+EM            P  ++Y+ +IDGL K AG  S  FL F
Sbjct: 429 LMHGLFKDGKTDRAFSLFKEMLEKE-----EVPPTLVSYTILIDGLGK-AGRVSEAFLQF 482

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
             M     + +             C  +  LI  L K  ++  A++L + + + G+ P+V
Sbjct: 483 QEMIDRGIIPE-------------CHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDV 529

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
             Y+ LI GL +   +D      T + +F+ +   G  P+  TY +L   F   GR 
Sbjct: 530 QAYSALITGLIDSSMVD------TAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRA 580



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 145/359 (40%), Gaps = 47/359 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + D ML   P    VT  +I+ G   K    +    +  ++   G  P  + +  
Sbjct: 230 DEARKLLDVMLTKGPEPTAVTYGSIVHG-FCKLDMINEAKEVIAQMRERGCEPGLFIFTS 288

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +   GR    + VL  +      PD + +TSLI  L +  R+ EA  +F  +   G
Sbjct: 289 LLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 348

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANG----------------------NGEF 228
           C  D  TY T+I    + G+   A  + E MA                        +  F
Sbjct: 349 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 408

Query: 229 GVV-------CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
           GV         +P+A+T++ ++ GL K+  +          +FS   +M        V  
Sbjct: 409 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDR--------AFSLFKEM---LEKEEVPP 457

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             +++  LIDGL K  ++  A   FQ +   G++P   TY  LI  L   G++ E K   
Sbjct: 458 TLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKK-- 515

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
               L + +   G+ PD+  Y+ LI        V + + +F  ++     P+ VT+  L
Sbjct: 516 ----LVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 570



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 59/142 (41%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  +F  ML      P + S+ IL   L K          F+ +   G+ P+ +TY  
Sbjct: 440 DRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTS 499

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI    K GR+     ++  +++    PD   +++LI  L   S +  A  +F ++   G
Sbjct: 500 LIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRG 559

Query: 191 CELDVFTYNTLINGLCRTGHTI 212
           C  +  TY  L  G    G  +
Sbjct: 560 CAPNEVTYKVLRRGFRAAGRAL 581


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 139 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             +   +++M+ 
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKG--------DLKQAHHLIDEMS- 303

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L  A E  + + +  +  + V Y  L  GLC +G
Sbjct: 304 ---VKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG------LKPDKITYTTLIDGCCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                    ++F    +M        ++   + +  L  GLC+  +   A ++ + +   
Sbjct: 326 ------DLDSAFEHRKRMI----QENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P+  TY ++I   C  G + +         L K +   G  P + T
Sbjct: 376 GLKPDARTYTMIINEFCKKGDVWKGSK------LLKEMQRDGHVPSVVT 418



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 134/302 (44%), Gaps = 24/302 (7%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L K K++  V   ++ +   G     Y +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 170

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V++ +L+        + E   L + +   G + DV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM       G+V  P+ +T++T+IDG CK  G  +      M  +  +   +    L+  
Sbjct: 231 EMLVK----GLV--PNGVTFTTLIDGHCKN-GRVDL----AMEIYKQMLSQSLSPDLI-- 277

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                 +  LI GLCK   LK A  L   +   GL P+ +TY  LI G C +G +D    
Sbjct: 278 -----TYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLD---- 328

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
             + F   KR+    +  D   Y  L +  C+ GR      +   +L     PDA T+T 
Sbjct: 329 --SAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTM 386

Query: 400 LI 401
           +I
Sbjct: 387 II 388



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 13/132 (9%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 107 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 160

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI------- 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI       
Sbjct: 161 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 220

Query: 402 KILEINSFFRQV 413
           K+ + N  F ++
Sbjct: 221 KMDDANELFDEM 232


>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Cucumis sativus]
          Length = 830

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 149/335 (44%), Gaps = 37/335 (11%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S+NIL   L      D  L     +   G+ PD  TYN L   F  +G +S    V+ ++
Sbjct: 308 SYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKM 367

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           L     PD VT+T+LI   C    I EA  L  +    G +L+V  YN L++ LC+ G  
Sbjct: 368 LLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRI 427

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE---------------------- 249
             AL LF+EM        +  EPD I YS +I GLCKE                      
Sbjct: 428 EEALTLFDEMET------LRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHH 481

Query: 250 -AGSANFLGFSCMASFS-ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
            A  A  LG     + S A N    +  +  ++ + L +  +IDG  ++  +  A +L+ 
Sbjct: 482 FAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVL-YNIMIDGYVRLDGIAEAMQLYY 540

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +   G+ P+VVT+N LI G C  G + E +    V  L       GL P + TY  L+N
Sbjct: 541 KMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRL------KGLVPSVVTYTTLMN 594

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            +C++G +   F     +  +   P  VT+T LIK
Sbjct: 595 AYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIK 629



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 134/319 (42%), Gaps = 25/319 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ ++  M+  R   P V +FN L     +         + + + L GL P   TY  L
Sbjct: 534 EAMQLYYKMIE-RGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTL 592

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N +C++G +   F  L  +  +   P  VT+T LIK LC ++++ E+  L   +   G 
Sbjct: 593 MNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGL 652

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D  TYNT+I   C+      AL L+  M   N      C+P  +TY  +I+ LC    
Sbjct: 653 LPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHN------CDPTQVTYKVLINALC---- 702

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                          +++M        +    + ++ +I   C   ++  A   F  +  
Sbjct: 703 --------IFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLA 754

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G + ++  Y+ +I  LC  G + E K++      F  + S G+ PD      ++N F +
Sbjct: 755 KGFVISIRDYSAVINRLCKRGLITEAKYF------FVMMLSEGVTPDPEICKTVLNAFHQ 808

Query: 372 IGRVSSGFVIFGRILPSCF 390
            G  SS F     ++ S F
Sbjct: 809 QGNNSSVFEFLAMVVKSGF 827



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 140/332 (42%), Gaps = 25/332 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL +FD M  +R   P    ++IL   L K         L++++ L   FP  +    
Sbjct: 428 EEALTLFDEMETLRL-EPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRA 486

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++    K G +S          R     D V +  +I        I EA  L+ K+   G
Sbjct: 487 VLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERG 546

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
               V T+NTLING CR G  + A  + E +       G+V  P  +TY+T+++  C E 
Sbjct: 547 ITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLK----GLV--PSVVTYTTLMNAYC-EV 599

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G+   +       F  L++M        V    + +  LI GLC+ +K+  + +L + + 
Sbjct: 600 GNMQEM-------FHFLHEM----EANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMY 648

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL+P+ VTYN +I+  C   ++ +      + LL          P   TY +LIN  C
Sbjct: 649 AKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHN------CDPTQVTYKVLINALC 702

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             G +     +   I     T   VT+ ++IK
Sbjct: 703 IFGDLKDVDRMVVSIEDRNITLKKVTYMTIIK 734



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 139/332 (41%), Gaps = 38/332 (11%)

Query: 71  NEALCVFDYM--LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           ++AL V   M  LN + S P   S       L   +H D +  ++  + ++G      T 
Sbjct: 187 HDALFVIAKMKDLNFQASVPTYNSL------LHNMRHTDIMWDVYNEIKVSGAPQSECTT 240

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           +ILI+  C+  ++      L         P  V+  +++   C    I  A + F  +  
Sbjct: 241 SILIHGLCEQSKLEDAISFLHDS-NKVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVK 299

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   D F+YN L++GLC  G    AL   ++M     + GV  EPD +TY+T+      
Sbjct: 300 NGLLHDSFSYNILLHGLCVAGSMDEALGFTDDME----KHGV--EPDVVTYNTLAK---- 349

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                   GF  +   S   K+     L  +    + +  LI G C++  ++ A +L Q 
Sbjct: 350 --------GFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQE 401

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
               G   NV+ YN+L+  LC  G+++E         LF  + +  L PD   Y+ILI+ 
Sbjct: 402 TLSRGFKLNVIFYNMLLSCLCKVGRIEEA------LTLFDEMETLRLEPDFIVYSILIHG 455

Query: 369 FCKIGRVSSGFVIF-----GRILPSCFTPDAV 395
            CK G V   + ++      R  P  F   AV
Sbjct: 456 LCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAV 487



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 69/331 (20%), Positives = 123/331 (37%), Gaps = 68/331 (20%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D +L  F+  +  GL      +++L   + +   +     V+ ++    F     T+ SL
Sbjct: 157 DLLLEKFRNWDSNGL-----VWDMLAFAYSRHEMIHDALFVIAKMKDLNFQASVPTYNSL 211

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           + ++   + IM    ++ +++V G      T + LI+GLC       A++   +      
Sbjct: 212 LHNM-RHTDIM--WDVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHDSNK--- 265

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
               V  P  ++ +TI+   CK         F C+   + L   +F + +          
Sbjct: 266 ----VVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNI---------- 311

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             L+ GLC    +  A      + + G+ P+VVTYN L +G    G M   +      LL
Sbjct: 312 --LLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLL 369

Query: 347 FKRLNSTGLFPDLYT-----------------------------------YNILINCFCK 371
                  GL PDL T                                   YN+L++C CK
Sbjct: 370 ------QGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCK 423

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +GR+     +F  +      PD + ++ LI 
Sbjct: 424 VGRIEEALTLFDEMETLRLEPDFIVYSILIH 454


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 166/378 (43%), Gaps = 61/378 (16%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           FD M+   PS P + +F+ L     K    D   SL+  +   G+ PD   Y+ILIN   
Sbjct: 263 FDMMVRSGPS-PNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLF 321

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           + G++  G  +    L      D V F+S++        + +A  ++T++   G   +V 
Sbjct: 322 RAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVV 381

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           TY+ LINGLCR G  + A  +F ++           EP  +TYS++IDG CK     +  
Sbjct: 382 TYSILINGLCRNGRVLEACGVFGQILKQG------LEPSVLTYSSLIDGFCKSENLRDGF 435

Query: 257 GF--------------SCMASFSALNKMA-------FYFPLVRVQCLCLN---FLCLIDG 292
           G                C    + L++         F+F  V+ + L LN   F  LIDG
Sbjct: 436 GLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVK-RGLTLNNYLFNALIDG 494

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET--------------- 337
             ++ + +   +++  +    ++P+VVTY +L++GL   G++DE                
Sbjct: 495 CFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPD 554

Query: 338 --------------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
                         +   T   +FK + S G+FPD+  YN+LIN F + G V +   +  
Sbjct: 555 HIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLR 614

Query: 384 RILPSCFTPDAVTFTSLI 401
            I+     PD VT+ ++I
Sbjct: 615 EIIKYGLEPDIVTYNTMI 632



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 150/321 (46%), Gaps = 24/321 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++ M    P V ++ +L   LA+    D  L+LF +L   G  PD   Y  LI+ FCK  
Sbjct: 510 LMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKR 569

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
             + G  +   +  +   PD   +  LI     E  +     L  ++  +G E D+ TYN
Sbjct: 570 DPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYN 629

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           T+I G C       A+ LFE +  G        +P+AIT++ +ID  CK+    +     
Sbjct: 630 TMICGYCSLKIFSKAIKLFEVLKCGR------TQPNAITFTILIDAYCKDGRMDD----- 678

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            M  FS++ +     P   +    L + CLIDG  K    + A EL++ +    + PN+V
Sbjct: 679 AMLIFSSMLERG---PEPNI----LTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIV 731

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           +Y+ILI GLC  G M+E        L F+      L PD+  Y ILI  +CK+GR++   
Sbjct: 732 SYSILIDGLCKKGLMEEAS------LAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAM 785

Query: 380 VIFGRILPSCFTPDAVTFTSL 400
           +++  +L +   PD +   +L
Sbjct: 786 MLYDHMLVNGIMPDDLLQKAL 806



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 151/330 (45%), Gaps = 25/330 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ V+  ML    S P V +++IL   L +         +F ++   GL P   TY+ L
Sbjct: 363 KAIEVYTRMLKEGIS-PNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSL 421

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ FCK   +  GF + G +LR    PD V  + LI  L  +  + EA   F +    G 
Sbjct: 422 IDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGL 481

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            L+ + +N LI+G  R   T   L ++  M    G + V+  PD +TY+ ++ GL  E G
Sbjct: 482 TLNNYLFNALIDGCFRLKRTRDGLKMYILM----GMYKVI--PDVVTYTVLVKGLA-EQG 534

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +      +A F  L K  F  P   + C       LIDG CK        ++F+ +  
Sbjct: 535 RLD----EALALFFQLLKKGFS-PDHIIYC------TLIDGFCKKRDPATGLQIFKLMQS 583

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+ P++  YN+LI     +G +      E V  L + +   GL PD+ TYN +I  +C 
Sbjct: 584 NGIFPDICIYNVLINMFFREGCV------ENVLELLREIIKYGLEPDIVTYNTMICGYCS 637

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +   S    +F  +      P+A+TFT LI
Sbjct: 638 LKIFSKAIKLFEVLKCGRTQPNAITFTILI 667



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 132/288 (45%), Gaps = 25/288 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F + L  +   P    +  L     K +   T L +FK +   G+FPD   YN+
Sbjct: 537 DEALALF-FQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNV 595

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN F + G V +   +L  I++    PD VT+ ++I   C+     +A  LF  L+   
Sbjct: 596 LINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGR 655

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + +  T+  LI+  C+ G    A+ +F  M           EP+ +TYS +IDG  K  
Sbjct: 656 TQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGP------EPNILTYSCLIDGYFKTE 709

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
            +         ++F    KM       RV    +++  LIDGLCK   ++ A   FQ   
Sbjct: 710 NTE--------SAFELYEKMLG----DRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAI 757

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
              L+P+V+ Y ILIRG C  G++ E        +L+  +   G+ PD
Sbjct: 758 GRHLLPDVIAYGILIRGYCKVGRLAEA------MMLYDHMLVNGIMPD 799



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 144/367 (39%), Gaps = 70/367 (19%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +  +F    K    +  L+  + L   GL P     N ++   C   ++         ++
Sbjct: 208 YEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMV 267

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           RS  +P+ VTF++LI   C E R+ EA +L+  +   G   D+  Y+ LINGL R G   
Sbjct: 268 RSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLE 327

Query: 213 VALNLFE-EMANG-----------------NGEFGVVCE-----------PDAITYSTII 243
              +LF   +A G                  G+ G   E           P+ +TYS +I
Sbjct: 328 EGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILI 387

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           +GLC+        G      F  + K         ++   L +  LIDG CK   L+   
Sbjct: 388 NGLCRNGRVLEACGV-----FGQILKQG-------LEPSVLTYSSLIDGFCKSENLRDGF 435

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET-------------------------- 337
            L+  + R G +P+VV  ++LI GL   G MDE                           
Sbjct: 436 GLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGC 495

Query: 338 ---KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
              K       ++  +    + PD+ TY +L+    + GR+     +F ++L   F+PD 
Sbjct: 496 FRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDH 555

Query: 395 VTFTSLI 401
           + + +LI
Sbjct: 556 IIYCTLI 562



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 153/402 (38%), Gaps = 81/402 (20%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKR-------LNLTGL 121
            P  AL  F++  N      PV SF  +   L + + +D    +F R       L + G 
Sbjct: 68  NPTSALRFFEWAENFLGLCHPVQSFCGIAHVLLRHRMFDPATRVFDRMVGQFGNLEVLGE 127

Query: 122 FPDRY---------TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
           F   +          Y+ L++C+C+ G V         + +   +      + ++  L  
Sbjct: 128 FHGSFRNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLID 187

Query: 173 ESRI-----------------------------MEAAALFTKLRV-FGCELDVFTYNTLI 202
             RI                             +E    F +  V  G    +   N ++
Sbjct: 188 SDRIDVILENYEEMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKIL 247

Query: 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCM 261
            GLC      VA + F+ M            P+ +T+ST+I+  CKE      F  ++ M
Sbjct: 248 KGLCMGNQIGVASDFFDMMVRSGP------SPNLVTFSTLINVYCKELRLDEAFSLYNLM 301

Query: 262 ASFSALNKMAFYFPLVR----------------------VQCLCLNFLCLIDGLCKISKL 299
                +  +  Y  L+                       V+   + F  ++D   ++  L
Sbjct: 302 IEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDL 361

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A E++  + + G+ PNVVTY+ILI GLC +G++ E         +F ++   GL P +
Sbjct: 362 GKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACG------VFGQILKQGLEPSV 415

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            TY+ LI+ FCK   +  GF ++G +L     PD V  + LI
Sbjct: 416 LTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLI 457


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 150/305 (49%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G ++ GF +   + 
Sbjct: 139 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  ++ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK              +   +N+M+ 
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKNG--------DLKQAQDLINEMS- 303

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 304 ---MKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYV 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 130/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    +    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P++V+FT+LI   C + R+  A  ++ ++      
Sbjct: 214 NGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L  EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKNGDLKQAQDLINEMSMKG------LKPDKITYTTLIDGSCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLETAFEYRKRMI----KENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLMKEMQRDGYVPSVVT 418



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 6/130 (4%)

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           ++F  L++G  K+  L     L  ++  +G+ P+V TY++LI GLC + ++D+       
Sbjct: 172 VSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANE---- 227

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
             LF  +   GL P+  ++  LI+  CK GRV     I+ ++L    +PD +T+ +LI  
Sbjct: 228 --LFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYG 285

Query: 404 LEINSFFRQV 413
           L  N   +Q 
Sbjct: 286 LCKNGDLKQA 295



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 29/142 (20%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-------DETKHY- 340
           +++ L K+   K+    ++     G   ++  +NIL+   C +G++       D    + 
Sbjct: 107 VLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWG 166

Query: 341 ---------------------ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                                   F L   + ++G+ PD+YTY++LIN  CK  ++    
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDAN 226

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  +L +   P++V+FT+LI
Sbjct: 227 ELFDEMLDNGLVPNSVSFTTLI 248


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 152/331 (45%), Gaps = 28/331 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL VF  +  +    P + + N +   L K +       LF  +   GL P   TYN 
Sbjct: 136 DEALYVFRRLRTL----PALPACNAVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNT 191

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN     G V+    V  +++     P+ VT+T++I  LC E  I +A  LF  ++  G
Sbjct: 192 LINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAG 251

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + + +TYN L++G C+      A+ L++E+            P+A+ ++T+IDG CK  
Sbjct: 252 MQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSG------LNPNAVIFTTLIDGFCKA- 304

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                        FS    M    P   V      +  L+DG  +    + A  L+Q + 
Sbjct: 305 -----------KRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMT 353

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R GL P+  T +I++RGLC+ GQM    H    FL  + +   G+  +   YN LI+ +C
Sbjct: 354 RLGLCPDEFTCSIVVRGLCDGGQM----HVADRFL--QGVQEDGVNLNAAAYNALIDEYC 407

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +IG +        R+      P+ V+++SLI
Sbjct: 408 RIGNLEEALATCTRMTEVGIEPNVVSYSSLI 438



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 29/338 (8%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           T  +A  V+D M+  +   P V ++  +   L +         LF  +   G+ P++YTY
Sbjct: 201 TVAKAQEVWDQMVAQQID-PNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTY 259

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N+L++  C+   V+   V+   +L+S   P+AV FT+LI   C   R  EA  +F ++  
Sbjct: 260 NVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPR 319

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           FG    V  YN+L++G  R+G+   AL L++EM       G+   PD  T S ++ GLC 
Sbjct: 320 FGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMT----RLGLC--PDEFTCSIVVRGLCD 373

Query: 249 --EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
             +   A+            LN  A+                LID  C+I  L+ A    
Sbjct: 374 GGQMHVADRFLQGVQEDGVNLNAAAYN--------------ALIDEYCRIGNLEEALATC 419

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G+ PNVV+Y+ LI G    G+M      +    ++  + + G+ P++ TY  LI
Sbjct: 420 TRMTEVGIEPNVVSYSSLIDGHSKRGKM------QIAMAIYTEMVAKGIEPNVVTYTALI 473

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +   K G + + F +   ++ +  +P+A+T + L+  L
Sbjct: 474 HGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGL 511



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 142/323 (43%), Gaps = 43/323 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  +N L     ++ +    L+L++ +   GL PD +T +I++   C  G++      
Sbjct: 324 PTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRF 383

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +       +A  + +LI + C    + EA A  T++   G E +V +Y++LI+G  +
Sbjct: 384 LQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSK 443

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            G   +A+ ++ EM A G        EP+ +TY+ +I G  K  G          A+F  
Sbjct: 444 RGKMQIAMAIYTEMVAKG-------IEPNVVTYTALIHGHAKNGG--------IDAAFRL 488

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA---------------RELFQ--SL 309
             +M        +    +    L+DGLC+ ++++ A                 +F   ++
Sbjct: 489 HKEMIEN----GISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTI 544

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
               L+PN V Y  LI GL  DGQ  E         LF  +  +G+ PD +TY +LI   
Sbjct: 545 EEECLIPNSVIYMTLIYGLYLDGQHCEAGK------LFSYMRKSGMIPDSFTYTLLIRGQ 598

Query: 370 CKIGRVSSGFVIFGRILPSCFTP 392
           C +G V +  +++  ++     P
Sbjct: 599 CMLGYVLNAMMLYADMMKIGVKP 621



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 18/166 (10%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  M+  +   P V ++  L    AK    D    L K +   G+ P+  T ++L+
Sbjct: 450 AMAIYTEMV-AKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLV 508

Query: 133 NCFCKMGRVS-----------------HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175
           +  C+  RV                  H       I   C  P++V + +LI  L  + +
Sbjct: 509 DGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQ 568

Query: 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
             EA  LF+ +R  G   D FTY  LI G C  G+ + A+ L+ +M
Sbjct: 569 HCEAGKLFSYMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMMLYADM 614



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 37/210 (17%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V S++ L    +K       ++++  +   G+ P+  TY  LI+   K G +   F 
Sbjct: 428 EPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFR 487

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE--LDVFT------- 197
           +   ++ +  +P+A+T + L+  LC E+R+ EA     +     C     VF+       
Sbjct: 488 LHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEE 547

Query: 198 --------YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
                   Y TLI GL   G    A  LF  M       G++  PD+ TY+ +I G C  
Sbjct: 548 CLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKS----GMI--PDSFTYTLLIRGQC-- 599

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRV 279
                 LG+        LN M  Y  ++++
Sbjct: 600 -----MLGY-------VLNAMMLYADMMKI 617



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 103/274 (37%), Gaps = 48/274 (17%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
             ++N L     +  + +  L+   R+   G+ P+  +Y+ LI+   K G++     +  
Sbjct: 396 AAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIYT 455

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P+ VT+T+LI        I  A  L  ++   G   +  T + L++GLCR  
Sbjct: 456 EMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCREN 515

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+    E                                  + G  C    S  + 
Sbjct: 516 RVQEAVRFVME----------------------------------YSGLKCSDIHSVFSN 541

Query: 270 MAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                  +  +CL  N   ++ LI GL    +   A +LF  + ++G++P+  TY +LIR
Sbjct: 542 FT-----IEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIR 596

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
           G C  G      +     +L+  +   G+ P  Y
Sbjct: 597 GQCMLG------YVLNAMMLYADMMKIGVKPTRY 624


>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
 gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
          Length = 484

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 144/315 (45%), Gaps = 23/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++N +   L K    D  + LF RL    + PD +TY+ L++  C+  R+     
Sbjct: 145 KPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIK 204

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   +L + +  DA  + ++    C E R+ EA  +   +   GC+  V TYN +ING+C
Sbjct: 205 VYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNCIINGVC 264

Query: 207 RTGHTI-VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           +  + I  A  LF++M       G  C P+A+TY T+I GL     S  +    C+  F 
Sbjct: 265 QYKNRIEEAYRLFQQMV------GSDCPPNAVTYGTMILGL-----SKIYEVQRCLELFK 313

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            ++K         +      +  LI    K+ KL  A+ + Q   R  + P+V  Y  LI
Sbjct: 314 GMSKAG-------LSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLI 366

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C           +   LLF+ +    ++P++ TYNI++   CK GR    + IF  +
Sbjct: 367 SGYCR----ARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEM 422

Query: 386 LPSCFTPDAVTFTSL 400
                +P+ +TF  +
Sbjct: 423 FKVKCSPNRMTFKVM 437



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 162/372 (43%), Gaps = 53/372 (14%)

Query: 63  GDITSITPNEALC--VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG 120
           G +    P+ AL    FD+       R  V  +  L   L + +     +  FKR     
Sbjct: 15  GSVIRRVPSLALARKFFDWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAH 74

Query: 121 LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180
             P  Y++ I+I CFC +      +  LG +      PD   +  ++K  C   R+  A 
Sbjct: 75  CRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRAL 134

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
             F K+    C+ +V TYNT+INGLC+ G    A++LF  + +       + +PD  TYS
Sbjct: 135 IKFGKMGK-TCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHD------LVDPDGFTYS 187

Query: 241 TIIDGLCK----EAG--------SANFLGFSCMASFSALNKMAFYFPLVR---------- 278
           T++ GLC+    EA          AN+ G +      A N MA  F   R          
Sbjct: 188 TLVHGLCQAERLEAAIKVYDMMLEANYDGDA-----GAYNAMADGFCKERRVDEALEVLK 242

Query: 279 --VQCLC----LNFLCLIDGLCKI-SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
             +Q  C    + + C+I+G+C+  ++++ A  LFQ +  +   PN VTY  +I GL   
Sbjct: 243 TMIQRGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGL--- 299

Query: 332 GQMDETKHYETV--FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                +K YE      LFK ++  GL PD Y Y+ LI  F K+ ++     I      + 
Sbjct: 300 -----SKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNH 354

Query: 390 FTPDAVTFTSLI 401
             PD   +T+LI
Sbjct: 355 VGPDVYMYTTLI 366



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 10/181 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFN-ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +EAL V   M+  R  +P V ++N I+ G        +    LF+++  +   P+  TY 
Sbjct: 235 DEALEVLKTMIQ-RGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYG 293

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +I    K+  V     +   + ++  +PD   + SLI       ++ EA ++       
Sbjct: 294 TMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARN 353

Query: 190 GCELDVFTYNTLINGLCRTGHTIV--ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
               DV+ Y TLI+G CR     V  AL LF+ M +          P+ ITY+ ++ GLC
Sbjct: 354 HVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRR------VWPNVITYNIVLRGLC 407

Query: 248 K 248
           K
Sbjct: 408 K 408



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 2/136 (1%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG--RVSHGF 145
           P   +++ L     K +  D   S+ +      + PD Y Y  LI+ +C+    RV    
Sbjct: 322 PDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEAL 381

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           ++   +      P+ +T+  +++ LC   R  EA  +F ++    C  +  T+  +  G+
Sbjct: 382 LLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGM 441

Query: 206 CRTGHTIVALNLFEEM 221
              G T     +F +M
Sbjct: 442 IHCGKTDKFERIFMDM 457


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 158/358 (44%), Gaps = 67/358 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN++   + K    D  + +F+ + +    PD YTY  L++  CK  R+     +
Sbjct: 197 PNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSL 256

Query: 148 LGRI-LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  + +  CF P  VTF  LI  LC +  +  AA L   + + GC  +  TYNTLI+GLC
Sbjct: 257 LDEMQIDGCF-PSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLC 315

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A++L + M +        C P+ +TY TII+GL K+  +   L  +C+     
Sbjct: 316 LKGKLEKAISLLDRMVSSK------CVPNVVTYGTIINGLVKQGRA---LDGACV----- 361

Query: 267 LNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
                    L+  +  C+N   +  LI GL K  K + A  LF+ +   G   N + Y+ 
Sbjct: 362 -------LALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSA 414

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT---------------------- 361
           +I GLC DG+ D+         +   + + G  P+ YT                      
Sbjct: 415 VIDGLCRDGKPDDAVE------VLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWK 468

Query: 362 -------------YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406
                        Y++LI+  CK G+V    +++ ++L     PD V ++S+I  L I
Sbjct: 469 DMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSI 526



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 159/359 (44%), Gaps = 38/359 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + D M  +    P   +FN+L   L K         L   + L G  P+  TYN 
Sbjct: 251 DEAVSLLDEM-QIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNT 309

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C  G++     +L R++ S   P+ VT+ ++I  L  + R ++ A +   +   G
Sbjct: 310 LIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERG 369

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             ++ + Y+TLI+GL + G +  A++LF+EM     E       + I YS +IDGLC++ 
Sbjct: 370 YCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYEL------NTIVYSAVIDGLCRDG 423

Query: 251 GSANFL--------------GFSCMASFSALNKMAFYFPLVRV------QCLCLNFLC-- 288
              + +               ++C +      +       V V           N +C  
Sbjct: 424 KPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYS 483

Query: 289 -LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI GLCK  K+K A  ++  +   G  P+VV Y+ +I GL   G +      E    L+
Sbjct: 484 VLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLV------EDAMQLY 537

Query: 348 KRLNSTG--LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             +   G    PD+ TYNIL+N  CK   +S    +   +L     PD VT T  +++L
Sbjct: 538 NEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRML 596


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 141/338 (41%), Gaps = 37/338 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L     K    + V  L   +   G  PD  TYN L+NCFCK GR+   +  
Sbjct: 227 PDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSY 286

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + R     + VTF++ +   C    + EA  LF ++R+ G + +  TY  L++G C+
Sbjct: 287 FAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCK 346

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSA 266
            G    AL L  EM        VV      TY+ ++DGLCKE   A     F  M     
Sbjct: 347 AGRLDDALVLTNEMVQQGVPLNVV------TYTVLVDGLCKEGKVAEAEDVFRLMERAGI 400

Query: 267 LNKMAFYFPLVRVQCLCLN----------------------FLCLIDGLCKISKLKIARE 304
                 Y  L+    +  N                      +  LI GLC + KL  A+ 
Sbjct: 401 RANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKS 460

Query: 305 LFQSLPRAGLMPNVVTY-NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           L   +   GL PN V Y NI+      D      K  E + LL K ++S G  P++ TY 
Sbjct: 461 LLNKMDECGLKPNNVIYTNIM------DACFKARKESEAIALLQKMMDS-GFRPNIVTYC 513

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            L++  CK G +      F +++     P+   +T+L+
Sbjct: 514 ALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALV 551



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 143/326 (43%), Gaps = 37/326 (11%)

Query: 81  LNMRPSRPPVTSF-NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           L + P R  + S  + L   LA     D  +    R+    + P+  T N ++ C  +  
Sbjct: 118 LALGPRRSALPSVVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLAR-- 175

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
                  +  R+      P+  TF  +I  LC E  + EA AL  +++  GC  DV TYN
Sbjct: 176 --ERSSELAWRLFEQLPAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYN 233

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEF-GVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           +LI+G  + G         EE+    GE  G  C PD +TY+ +++  CK          
Sbjct: 234 SLIDGYGKCGE-------LEEVEKLVGEMRGCGCRPDVVTYNALVNCFCK---------- 276

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                F  + +   YF  ++ + +  N   F   +D  CK   ++ A +LF  +   G+ 
Sbjct: 277 -----FGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMK 331

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           PN VTY  L+ G C  G++D+        +L   +   G+  ++ TY +L++  CK G+V
Sbjct: 332 PNEVTYTCLVDGTCKAGRLDDA------LVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKV 385

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
           +    +F  +  +    + + +T+LI
Sbjct: 386 AEAEDVFRLMERAGIRANELLYTTLI 411



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 150/361 (41%), Gaps = 52/361 (14%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ +F  M  M+  +P   ++  L     K    D  L L   +   G+  +  TY +L
Sbjct: 317 EAMKLFAQM-RMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVL 375

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G+V+    V   + R+    + + +T+LI           A +L ++++  G 
Sbjct: 376 VDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGM 435

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           ELDV  Y  LI GLC     +  L+  + + N   E G+  +P+ + Y+ I+D   K   
Sbjct: 436 ELDVSLYGALIWGLC----NLQKLDEAKSLLNKMDECGL--KPNNVIYTNIMDACFKARK 489

Query: 252 SANFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
            +  +          L KM  + + P +   C       L+DGLCK   +  A   F  +
Sbjct: 490 ESEAIAL--------LQKMMDSGFRPNIVTYC------ALVDGLCKAGSIDEAISHFNKM 535

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDET-----------------------------KHY 340
              GL PNV  Y  L+ GLC +G++D+                               + 
Sbjct: 536 VDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNL 595

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           +  F L  ++ ++GL  DLY Y   +  FC +  +     +   ++ +  TPDAV +  L
Sbjct: 596 QDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCL 655

Query: 401 I 401
           I
Sbjct: 656 I 656



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 112/249 (44%), Gaps = 20/249 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY-NILINCFCKMGRVSHGFVVL 148
           V+ +  L   L   +  D   SL  +++  GL P+   Y NI+  CF K  + S    +L
Sbjct: 439 VSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACF-KARKESEAIALL 497

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
            +++ S F P+ VT+ +L+  LC    I EA + F K+   G E +V  Y  L++GLC+ 
Sbjct: 498 QKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKN 557

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
           G    A+ L +EM +           D +  ++++DG  K+    +          S L 
Sbjct: 558 GRLDKAVLLLDEMIDKGMSL------DNVVCTSLMDGHLKQGNLQDAFALKAKMINSGL- 610

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
           ++  Y            + C + G C ++ ++ ARE+   +   G+ P+ V YN LI   
Sbjct: 611 QLDLY-----------GYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKC 659

Query: 329 CNDGQMDET 337
              G M+E 
Sbjct: 660 QKLGNMEEA 668



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 130/299 (43%), Gaps = 34/299 (11%)

Query: 104 KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTF 163
           K+ +  LSL   +   G+  D   Y  LI   C + ++     +L ++      P+ V +
Sbjct: 418 KNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIY 477

Query: 164 TSLIKDLCAESRI-MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
           T+ I D C ++R   EA AL  K+   G   ++ TY  L++GLC+ G    A++ F +M 
Sbjct: 478 TN-IMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMV 536

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
               + G+  EP+   Y+ ++DGLCK                  L+K       +  + +
Sbjct: 537 ----DLGL--EPNVQAYTALVDGLCKNG---------------RLDKAVLLLDEMIDKGM 575

Query: 283 CL-NFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
            L N +C  L+DG  K   L+ A  L   +  +GL  ++  Y   + G CN   + E + 
Sbjct: 576 SLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEARE 635

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI--LPSCFTPDAVT 396
                 +   +   G+ PD   YN LIN   K+G +    ++   +  L SC   DA +
Sbjct: 636 ------VLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEMESLLSCTNADAAS 688



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  +ID LCK   L  AR L   +   G  P+VVTYN LI G    G+++E +       
Sbjct: 197 FNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEK------ 250

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
           L   +   G  PD+ TYN L+NCFCK GR+   +  F  +       + VTF++ +    
Sbjct: 251 LVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFC 310

Query: 406 INSFFRQV 413
            N   R+ 
Sbjct: 311 KNGMVREA 318



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 8/182 (4%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +   M++    RP + ++  L   L K    D  +S F ++   GL P+   Y  
Sbjct: 491 SEAIALLQKMMD-SGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTA 549

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK GR+    ++L  ++    + D V  TSL+     +  + +A AL  K+   G
Sbjct: 550 LVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSG 609

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +LD++ Y   + G C       A  +  EM     E G+   PDA+ Y+ +I+  C++ 
Sbjct: 610 LQLDLYGYTCFVWGFCNLNMIQEAREVLSEMI----ENGIT--PDAVVYNCLINK-CQKL 662

Query: 251 GS 252
           G+
Sbjct: 663 GN 664


>gi|414888175|tpg|DAA64189.1| TPA: hypothetical protein ZEAMMB73_647521 [Zea mays]
          Length = 667

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 157/354 (44%), Gaps = 35/354 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL   + M  +R + P V ++  + GCL   K +   + L++ +   GL PD     +
Sbjct: 283 HDALKTLENMW-IRGTNPDVVTYTTVVGCLCDNKQFAEAVELWEEMVRRGLKPDIVACGV 341

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   CK  +V   F +  R+L      +   + +LI        I +A  + + +R  G
Sbjct: 342 LIFGLCKSDKVDEAFELALRMLSLNLELNVCIYNALISGFLRSGSINKAFKIISVMRTNG 401

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           CE DV TYN  +N  C TG    A  L EEM     E   +  PD  +Y+ ++ GLCK  
Sbjct: 402 CEPDVVTYNIRLNHYCNTGMIKEAEKLIEEM-----EMSGIVNPDRYSYNQMLKGLCKAH 456

Query: 251 GSANFLGF--------------SC---MASFSALNKMAFYFPLVR------VQCLCLNFL 287
                 GF              SC   + +F    K++    L +      +Q   + + 
Sbjct: 457 QLDRAFGFVSDHMEVGGFCDIVSCNILIDAFCKAKKVSSALKLFKEMGYKGIQADAVTYG 516

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI+GL  +    +A E+F+ + +A ++PNV  YNI++  LC  GQ ++ +       +F
Sbjct: 517 TLINGLYGVGYYYLAEEIFEQMLKARVVPNVNLYNIMLHNLCKAGQFEQAQK------IF 570

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            ++    + PD+ T+N LI    K  R      +F  +      PD++TF  LI
Sbjct: 571 LQMIQKEVSPDIITFNTLIYWLGKCSRAIEAIDLFRDMTARGIEPDSLTFRYLI 624



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 145/341 (42%), Gaps = 36/341 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + + NI   CL K       L   + + + G  PD  TY  ++ C C   + +    +
Sbjct: 264 PDIWACNIYVDCLCKHNRLHDALKTLENMWIRGTNPDVVTYTTVVGCLCDNKQFAEAVEL 323

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++R    PD V    LI  LC   ++ EA  L  ++     EL+V  YN LI+G  R
Sbjct: 324 WEEMVRRGLKPDIVACGVLIFGLCKSDKVDEAFELALRMLSLNLELNVCIYNALISGFLR 383

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID-----GLCKEA----------GS 252
           +G    A  +   M   NG     CEPD +TY+  ++     G+ KEA          G 
Sbjct: 384 SGSINKAFKIISVMRT-NG-----CEPDVVTYNIRLNHYCNTGMIKEAEKLIEEMEMSGI 437

Query: 253 ANFLGFSCMASFSALNK-------MAFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIAR 303
            N   +S       L K         F    + V   C    C  LID  CK  K+  A 
Sbjct: 438 VNPDRYSYNQMLKGLCKAHQLDRAFGFVSDHMEVGGFCDIVSCNILIDAFCKAKKVSSAL 497

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           +LF+ +   G+  + VTY  LI GL   G      +Y     +F+++    + P++  YN
Sbjct: 498 KLFKEMGYKGIQADAVTYGTLINGLYGVG------YYYLAEEIFEQMLKARVVPNVNLYN 551

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           I+++  CK G+      IF +++    +PD +TF +LI  L
Sbjct: 552 IMLHNLCKAGQFEQAQKIFLQMIQKEVSPDIITFNTLIYWL 592



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 121/323 (37%), Gaps = 45/323 (13%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK---MGRVSHGFVVLG 149
           + IL     +   +D+V+  F  +  +G       YN  I    K      V   + V  
Sbjct: 164 YRILLSGYVRAGKFDSVIHTFDEMVTSGCREFGVDYNRFIGVLVKNCCFDLVEKYYSV-- 221

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
             L   F   + T++  I  LC   RI     L   +  FGC  D++  N  ++ LC+  
Sbjct: 222 -ALDKGFCLTSFTYSRWISALCQSERIELVERLLADMDKFGCFPDIWACNIYVDCLCKHN 280

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               AL   E M            PD +TY+T++  LC     A                
Sbjct: 281 RLHDALKTLENMWIRG------TNPDVVTYTTVVGCLCDNKQFA--------------EA 320

Query: 270 MAFYFPLVR-------VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
           +  +  +VR       V C  L F     GLCK  K+  A EL   +    L  NV  YN
Sbjct: 321 VELWEEMVRRGLKPDIVACGVLIF-----GLCKSDKVDEAFELALRMLSLNLELNVCIYN 375

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            LI G    G +++       F +   + + G  PD+ TYNI +N +C  G +     + 
Sbjct: 376 ALISGFLRSGSINKA------FKIISVMRTNGCEPDVVTYNIRLNHYCNTGMIKEAEKLI 429

Query: 383 GRI-LPSCFTPDAVTFTSLIKIL 404
             + +     PD  ++  ++K L
Sbjct: 430 EEMEMSGIVNPDRYSYNQMLKGL 452



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 4/149 (2%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +    ++  L   L    +Y     +F+++    + P+   YNI+++  CK G+      
Sbjct: 509 QADAVTYGTLINGLYGVGYYYLAEEIFEQMLKARVVPNVNLYNIMLHNLCKAGQFEQAQK 568

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++++   +PD +TF +LI  L   SR +EA  LF  +   G E D  T+  LI+GL 
Sbjct: 569 IFLQMIQKEVSPDIITFNTLIYWLGKCSRAIEAIDLFRDMTARGIEPDSLTFRYLISGLL 628

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPD 235
             G    A  ++E M     E G++ + D
Sbjct: 629 EEGKATQAYEVWEYML----ENGIILDRD 653



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 111/306 (36%), Gaps = 74/306 (24%)

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           R  F         ++  L  +S     +    ++R  G  L    Y  L++G  R G   
Sbjct: 119 RPGFDHTQFAIAYVVSLLFVDSNFFLLSEFLERVRSQGVALHRSLYRILLSGYVRAGKFD 178

Query: 213 VALNLFEEMA-NGNGEFGV----------------VCEP------------DAITYSTII 243
             ++ F+EM  +G  EFGV                + E              + TYS  I
Sbjct: 179 SVIHTFDEMVTSGCREFGVDYNRFIGVLVKNCCFDLVEKYYSVALDKGFCLTSFTYSRWI 238

Query: 244 DGLCK-------EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC------------- 283
             LC+       E   A+   F C     A N        + V CLC             
Sbjct: 239 SALCQSERIELVERLLADMDKFGCFPDIWACN--------IYVDCLCKHNRLHDALKTLE 290

Query: 284 -----------LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  ++  LC   +   A EL++ + R GL P++V   +LI GLC   
Sbjct: 291 NMWIRGTNPDVVTYTTVVGCLCDNKQFAEAVELWEEMVRRGLKPDIVACGVLIFGLCKSD 350

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           ++DE       F L  R+ S  L  ++  YN LI+ F + G ++  F I   +  +   P
Sbjct: 351 KVDEA------FELALRMLSLNLELNVCIYNALISGFLRSGSINKAFKIISVMRTNGCEP 404

Query: 393 DAVTFT 398
           D VT+ 
Sbjct: 405 DVVTYN 410



 Score = 45.1 bits (105), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 1/128 (0%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F+ ML  R   P V  +NI+   L K   ++    +F ++    + PD  T+N LI   
Sbjct: 534 IFEQMLKARVV-PNVNLYNIMLHNLCKAGQFEQAQKIFLQMIQKEVSPDIITFNTLIYWL 592

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            K  R      +   +      PD++TF  LI  L  E +  +A  ++  +   G  LD 
Sbjct: 593 GKCSRAIEAIDLFRDMTARGIEPDSLTFRYLISGLLEEGKATQAYEVWEYMLENGIILDR 652

Query: 196 FTYNTLIN 203
              + LI+
Sbjct: 653 DVSDRLIS 660


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 148/315 (46%), Gaps = 24/315 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F IL   L K         L + +   G FP+   +N +++  CK GR +  +  
Sbjct: 8   PTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGF 67

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +     +P  VT+  LI   C E ++  A  +  ++   G E +  TYNT ++GLC+
Sbjct: 68  IETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCK 127

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    AL LF  M             D   Y+T+IDGLC+    A         ++S L
Sbjct: 128 YGKVDDALALFRAMTEKKIRL------DVYGYTTLIDGLCQAGKLAE--------AYSLL 173

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           ++M     + +  C    +  ++  LCK S++  A +LF+ +  +G++P+ +T+ +++ G
Sbjct: 174 DEMENSGCVPKPGC----YNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFG 229

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C   ++D+        LL +++ S GL P    YN LI+   + GRVS  + +   ++ 
Sbjct: 230 YCRGHRIDD------ALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMIS 283

Query: 388 SCFTPDAVTFTSLIK 402
              +P++ T+  + K
Sbjct: 284 RGLSPNSRTYALMRK 298



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 136/288 (47%), Gaps = 30/288 (10%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFV---VLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
           G  P   T+ IL++  CK  R++  F    V+G   R CF P+A+ F  ++  LC E R 
Sbjct: 5   GCIPTVVTFGILVDGLCKANRLTDAFELVEVMGE--RGCF-PNALVFNGIMDALCKEGRS 61

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
            EA      +R  G    + TYN LI+G C+      AL + +EM  G G      EP+ 
Sbjct: 62  AEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEM-TGRGH-----EPNH 115

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           +TY+T + GLCK     + L     A F A+ +        +++     +  LIDGLC+ 
Sbjct: 116 VTYNTFLHGLCKYGKVDDAL-----ALFRAMTEK-------KIRLDVYGYTTLIDGLCQA 163

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            KL  A  L   +  +G +P    YN ++  LC   +++E         LFKR+  +G+ 
Sbjct: 164 GKLAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHK------LFKRMTGSGIL 217

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           PD  T+ +++  +C+  R+    ++  ++  +   P  V + +LI  L
Sbjct: 218 PDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDAL 265



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 8/164 (4%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P   ++N     L K    D  L+LF+ +    +  D Y Y  LI+  C+ G+++ 
Sbjct: 109 RGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAE 168

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
            + +L  +  S   P    + +++  LC  SRI EA  LF ++   G   D  T+  ++ 
Sbjct: 169 AYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVF 228

Query: 204 GLCRTGHTI-VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           G CR GH I  AL L ++M +          P  + Y+T+ID L
Sbjct: 229 GYCR-GHRIDDALLLLQQMKSAG------LAPREVIYNTLIDAL 265



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F  M   +  R  V  +  L   L +        SL   +  +G  P    YN 
Sbjct: 132 DDALALFRAMTE-KKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNA 190

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++  CK  R++    +  R+  S   PD +TF  ++   C   RI +A  L  +++  G
Sbjct: 191 ILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAG 250

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
                  YNTLI+ L R G    A  L +EM
Sbjct: 251 LAPREVIYNTLIDALNRAGRVSEAYRLLQEM 281



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 1/149 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + D M N     P    +N +   L K    +    LFKR+  +G+ PD  T+ ++
Sbjct: 168 EAYSLLDEMEN-SGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMM 226

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +  +C+  R+    ++L ++  +   P  V + +LI  L    R+ EA  L  ++   G 
Sbjct: 227 VFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGL 286

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEE 220
             +  TY  +        + +V L+  +E
Sbjct: 287 SPNSRTYALMRKQQTDDSNLVVELDYRKE 315


>gi|255661018|gb|ACU25678.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 376

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 151/315 (47%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V SFNI+   L      + V+S+++ +  +G   D  TY IL++  CK G ++    +L 
Sbjct: 59  VASFNIMMRGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGLCKNGDINKSLHMLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
                    DA  ++++I  LC +S++ +A ++   +   GC  +   YN LINGL    
Sbjct: 119 IAEVKGGVLDAFAYSAMINWLCKDSKLDKAVSVLNGMIKXGCMPNAHVYNALINGLVGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F+EM N +      C P  ITY+T+I+GLCK    A   G +       L K
Sbjct: 179 KFEDAIRVFQEMGNTH------CSPTIITYNTLINGLCK----AERFGEAYDLVKEMLEK 228

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
              + P V      + +  LI GLC   K+++A  L+  +   G  P+V  +NILI GLC
Sbjct: 229 --GWNPCV------ITYSLLIKGLCLGRKVEMALHLWNQVINKGFKPDVQMHNILIHGLC 280

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G+       +    L+  +N     P+L T+N L+  F K G + +    + RIL + 
Sbjct: 281 SVGKT------QLALSLYFDMNRWNCAPNLVTHNTLMZGFYKDGDIRNALATWARILRNG 334

Query: 390 FTPDAVTFTSLIKIL 404
             PD +++   +K L
Sbjct: 335 VQPDIISYNITLKGL 349



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 144/328 (43%), Gaps = 29/328 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NE + +++ M         +T + IL   L K    +  L + +   + G   D + Y+ 
Sbjct: 76  NEVISIWELMKKSGFVEDSIT-YGILVHGLCKNGDINKSLHMLEIAEVKGGVLDAFAYSA 134

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK  ++     VL  +++    P+A  + +LI  L   S+  +A  +F ++    
Sbjct: 135 MINWLCKDSKLDKAVSVLNGMIKXGCMPNAHVYNALINGLVGASKFEDAIRVFQEMGNTH 194

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C   + TYNTLINGLC+      A +L +EM     E G    P  ITYS +I GLC   
Sbjct: 195 CSPTIITYNTLINGLCKAERFGEAYDLVKEML----EKG--WNPCVITYSLLIKGLC--- 245

Query: 251 GSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                LG     +    N++    + P V++  +      LI GLC + K ++A  L+  
Sbjct: 246 -----LGRKVEMALHLWNQVINKGFKPDVQMHNI------LIHGLCSVGKTQLALSLYFD 294

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + R    PN+VT+N L+ G   DG +            + R+   G+ PD+ +YNI +  
Sbjct: 295 MNRWNCAPNLVTHNTLMZGFYKDGDI------RNALATWARILRNGVQPDIISYNITLKG 348

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVT 396
            C   R+S   +     L     P  +T
Sbjct: 349 LCSCNRISGAILFLHDALTKKIFPTIIT 376



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 138/300 (46%), Gaps = 29/300 (9%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N F K+GR+   F  L  ++      +  +F  +
Sbjct: 7   DAAKMVYKEIVESEVSPDAVVYNAMLNGFFKVGRIKDCFE-LWELMGKEGGRNVASFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E  +++  ++  G   D  TY  L++GLC+ G    +L++  E+A   G
Sbjct: 66  MRGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGLCKNGDINKSLHML-EIAEVKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CL 284
             GV+   DA  YS +I+ LCK++            + S LN M      ++  C+    
Sbjct: 125 --GVL---DAFAYSAMINWLCKDS--------KLDKAVSVLNGM------IKXGCMPNAH 165

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  LI+GL   SK + A  +FQ +      P ++TYN LI GLC      + + +   +
Sbjct: 166 VYNALINGLVGASKFEDAIRVFQEMGNTHCSPTIITYNTLINGLC------KAERFGEAY 219

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L K +   G  P + TY++LI   C   +V     ++ +++   F PD      LI  L
Sbjct: 220 DLVKEMLEKGWNPCVITYSLLIKGLCLGRKVEMALHLWNQVINKGFKPDVQMHNILIHGL 279



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 101/265 (38%), Gaps = 52/265 (19%)

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG---- 226
           C    I  A  ++ ++       D   YN ++NG  + G       L+E M    G    
Sbjct: 1   CESGDIDAAKMVYKEIVESEVSPDAVVYNAMLNGFFKVGRIKDCFELWELMGKEGGRNVA 60

Query: 227 ----------EFGVVCE--------------PDAITYSTIIDGLCKEAGSANFLGFSCMA 262
                     + G V E               D+ITY  ++ GLCK              
Sbjct: 61  SFNIMMRGLFDNGKVNEVISIWELMKKSGFVEDSITYGILVHGLCKNG------------ 108

Query: 263 SFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
               +NK      +  V+   L+   +  +I+ LCK SKL  A  +   + + G MPN  
Sbjct: 109 ---DINKSLHMLEIAEVKGGVLDAFAYSAMINWLCKDSKLDKAVSVLNGMIKXGCMPNAH 165

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            YN LI GL           +E    +F+ + +T   P + TYN LIN  CK  R    +
Sbjct: 166 VYNALINGLVG------ASKFEDAIRVFQEMGNTHCSPTIITYNTLINGLCKAERFGEAY 219

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            +   +L   + P  +T++ LIK L
Sbjct: 220 DLVKEMLEKGWNPCVITYSLLIKGL 244


>gi|302755288|ref|XP_002961068.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
 gi|300172007|gb|EFJ38607.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
          Length = 461

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 152/316 (48%), Gaps = 26/316 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R  V++++IL   L   K  +  L L +++   GL  D+ TY+++I+  CK G V    V
Sbjct: 84  RASVSTYSILVAALTAAKRNNDALELLEQMESVGLEADKDTYSLIIHSLCKSGMVDKAKV 143

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++ R++     PDA  +  +I++L    R+ EA  +  +     C   V TYN+L+ G  
Sbjct: 144 LVERMISRNCVPDARIYDPVIEELSKTGRVDEAVEIAKEADAKHCT-SVVTYNSLVLGFL 202

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +       + +F  MA           PD  TY+ + +GL +  G   F       ++  
Sbjct: 203 KARRLKRGIKVFTRMARTGP------SPDIYTYNILFEGLSRH-GLWRF-------AYKL 248

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L +M     L  V    + F  LI+GL + ++   A  L Q +   G  PN +TY IL++
Sbjct: 249 LPRMNQDGVLPDV----VTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLK 304

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            L  + + DE         LF+RL    L P++YTYN +++  CK GR+     +FG +L
Sbjct: 305 WLARNARTDECVE------LFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVML 358

Query: 387 PS-CFTPDAVTFTSLI 401
            S C  P+A+T+ +LI
Sbjct: 359 ASDCTPPNAITYRALI 374



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 120/286 (41%), Gaps = 32/286 (11%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++N L     K +     + +F R+  TG  PD YTYNIL     + G     + +L 
Sbjct: 191 VVTYNSLVLGFLKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLP 250

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R+ +    PD VTF SLI  L  ++R   A  L  ++   GC+ +  TY  L+  L R  
Sbjct: 251 RMNQDGVLPDVVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNA 310

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---GSANFLGFSCMASFSA 266
            T   + LF+ + +          P+  TY+T++  LCK      +    G    +  + 
Sbjct: 311 RTDECVELFQRLLDRK------LAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTP 364

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            N               + +  LI GLC   +L+ A  L  ++ + G  P+V  Y  ++ 
Sbjct: 365 PN--------------AITYRALIHGLCLKMELERAVLLLDAMAKRGCAPDVACYGTIVA 410

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
             C  G++DE       F L +R+   G   D   +  L+   CK+
Sbjct: 411 AFCKQGRIDEA------FELLERMPFAG---DKVMFRTLVRALCKL 447



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 120/276 (43%), Gaps = 28/276 (10%)

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAV--TFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
            CK G V      L R  ++ F+  A   T++ L+  L A  R  +A  L  ++   G E
Sbjct: 61  LCKAGNVDGALEFL-REAKNSFSLRASVSTYSILVAALTAAKRNNDALELLEQMESVGLE 119

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D  TY+ +I+ LC++G    A  L E M + N      C PDA  Y  +I+ L K    
Sbjct: 120 ADKDTYSLIIHSLCKSGMVDKAKVLVERMISRN------CVPDARIYDPVIEELSKTGRV 173

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
              +  +  A       +  Y  LV      L FL       K  +LK   ++F  + R 
Sbjct: 174 DEAVEIAKEADAKHCTSVVTYNSLV------LGFL-------KARRLKRGIKVFTRMART 220

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  P++ TYNIL  GL   G       +   + L  R+N  G+ PD+ T+N LIN   + 
Sbjct: 221 GPSPDIYTYNILFEGLSRHGL------WRFAYKLLPRMNQDGVLPDVVTFNSLINGLVED 274

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            R      +   ++     P+A+T+T L+K L  N+
Sbjct: 275 NRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNA 310



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 3/101 (2%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +F  ML    + P   ++  L   L      +  + L   +   G  PD   Y  
Sbjct: 348 DQAHRLFGVMLASDCTPPNAITYRALIHGLCLKMELERAVLLLDAMAKRGCAPDVACYGT 407

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           ++  FCK GR+   F +L R+    F  D V F +L++ LC
Sbjct: 408 IVAAFCKQGRIDEAFELLERM---PFAGDKVMFRTLVRALC 445


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 143/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G ++ GF +   + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+                 L    F
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKF 312

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 313 ------------TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYK 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    +    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++    V+   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM           +PD  TY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG------LKPDKFTYTTLIDGNCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLETAFEYRKRMI----KENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLLKEMQRDGYKPSVVT 418


>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 154/333 (46%), Gaps = 26/333 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F+  +      P V SFN++   + +  +    L L +R+   G  PD  T NI
Sbjct: 63  QDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNI 122

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           L++  C++ +V+ G  VL R+ R     P+ VT+TS+I   C   R+ +A +++  +   
Sbjct: 123 LVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQS 182

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +  TYN LING  +      A+ ++ ++   +      C PD +T++++IDG C+ 
Sbjct: 183 GTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHS------CPPDVVTFNSLIDGYCR- 235

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                     C     A+ ++        +Q     F  +I  LC  ++   A  L + L
Sbjct: 236 ----------CGQLDDAM-RIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLREL 284

Query: 310 P-RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
             RA ++P    YN +I  LC  G++DE        L+   +   G  PD YTY ILI  
Sbjct: 285 NMRADIVPQTFIYNPIIDILCKGGKVDEAN------LIVTDMEEKGCHPDKYTYTILIIG 338

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            C  GR+     +F +++ +   PD +T  S I
Sbjct: 339 HCMKGRIPEAVTLFHKMVETGCRPDNITINSFI 371



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 138/339 (40%), Gaps = 36/339 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    F+ + G        D   +L  + +  G   + Y YN L+N     GR      +
Sbjct: 9   PDAGFFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQDAVAL 68

Query: 148 L-GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
               I    ++PD  +F  +IK +C    + +A  L  ++  FGC  D  T N L++GLC
Sbjct: 69  FESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLC 128

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK---------------EAG 251
           R         +   +         VC P+ +TY+++I G CK               ++G
Sbjct: 129 RVKQVNKGHEVLRRLQRDG-----VCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSG 183

Query: 252 SA------NFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIAR 303
           +       N L      +    + +  Y+ L+   C    + F  LIDG C+  +L  A 
Sbjct: 184 TRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDAM 243

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN-STGLFPDLYTY 362
            ++  + +  + PNV T++I+I  LC   +  E         L + LN    + P  + Y
Sbjct: 244 RIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEA------LSLLRELNMRADIVPQTFIY 297

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N +I+  CK G+V    +I   +      PD  T+T LI
Sbjct: 298 NPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILI 336



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 125/253 (49%), Gaps = 30/253 (11%)

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAA-LFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +S + PDA  F S +   C  + +++AAA L TK   FGC ++ + YN L+N L   G  
Sbjct: 4   QSGYVPDA-GFFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRA 62

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A+ LFE     +G +     PD  +++ +I G+C+          +   +   + +M 
Sbjct: 63  QDAVALFESWIQ-DGLY----SPDVWSFNVVIKGVCRVG--------NLQKALELVERMT 109

Query: 272 FY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL-MPNVVTYNILIRGL 328
            +   P    Q +      L+DGLC++ ++    E+ + L R G+ MPNVVTY  +I G 
Sbjct: 110 EFGCSPDTITQNI------LVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGY 163

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C  G+M +       F ++  +  +G  P+  TYN+LIN + K   + S   ++ +++  
Sbjct: 164 CKAGRMKDA------FSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILH 217

Query: 389 CFTPDAVTFTSLI 401
              PD VTF SLI
Sbjct: 218 SCPPDVVTFNSLI 230


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 157/357 (43%), Gaps = 45/357 (12%)

Query: 74  LCVFDYMLNMRPSRPPVTSFNILFGCL---AKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           L +F +M    P  P   ++N L   L   A  +H    LSL  R   +G  PD +T+N 
Sbjct: 113 LRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVR---SGWRPDAFTFNS 169

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  +C+  ++     +  ++    F+ DAV++ +LI+  C   RI EA  LF ++    
Sbjct: 170 LILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREM---- 225

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D++T+  L+ GLC  G     L + ++M     E G    P    Y+ ++D  C+E 
Sbjct: 226 TQPDMYTHAALVKGLCDAGRGEEGLCMLQKMK----ELG--WRPTTRAYAALVDLWCREQ 279

Query: 251 GSANFLGF--------------SCMASFSALNKMAFYFPLVRV---------QCLCLNFL 287
            +                    +C    +A  +       VRV         +     + 
Sbjct: 280 KAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYN 339

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            ++ G C   K+  A  L   +   G+ P+VVTYN+LIRG C DG      H  + F L 
Sbjct: 340 AIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDG------HIGSAFRLL 393

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + +   GL  D YTYN+LI+  CK G+V     +F  +      P++VTF ++I  L
Sbjct: 394 RLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGL 450



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 142/334 (42%), Gaps = 29/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F  M     ++P + +   L   L      +  L + +++   G  P    Y  
Sbjct: 216 DEALELFREM-----TQPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAA 270

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ +C+  +      +L  +  S   P  VT T ++   C E R+  A  +F  +R  G
Sbjct: 271 LVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKG 330

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           CE +V+TYN ++ G C  G    A+ L ++M     E GV  EPD +TY+ +I G C + 
Sbjct: 331 CEPNVWTYNAIVQGFCNAGKVYKAMALLDQMR----ECGV--EPDVVTYNLLIRGQCIDG 384

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              +      +   + L    + + +            LID LCK  K+  A  LF  L 
Sbjct: 385 HIGSAFRLLRLMEGNGLAADQYTYNV------------LIDALCKTGKVDEACSLFDGLE 432

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ PN VT+N +I GLC  G+ D            + + S G  PD YTY+  I   C
Sbjct: 433 YRGIRPNSVTFNTVINGLCKAGKFD------VACTFLENMISAGYAPDTYTYSPFIENLC 486

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K      G      +L     P  V +T +I  L
Sbjct: 487 KTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRL 520



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 139/325 (42%), Gaps = 25/325 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ VF+ M   +   P V ++N +             ++L  ++   G+ PD  TYN+LI
Sbjct: 319 AVRVFESM-RFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLI 377

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              C  G +   F +L  +  +    D  T+  LI  LC   ++ EA +LF  L   G  
Sbjct: 378 RGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIR 437

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            +  T+NT+INGLC+ G   VA    E M +          PD  TYS  I+ LCK  GS
Sbjct: 438 PNSVTFNTVINGLCKAGKFDVACTFLENMISAG------YAPDTYTYSPFIENLCKTKGS 491

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
              L F        +++M        V+   +N+  +I+ L       +A  ++  +   
Sbjct: 492 QEGLFF--------IDEML----QKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQ 539

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  P+VVTY   +R  CN+G++DE    E V    K+  +     D   YN LI+    I
Sbjct: 540 GCSPDVVTYTTSVRAYCNEGRLDEA---ENVVTEMKKCRT---IVDAMAYNTLIDGHTSI 593

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTF 397
           G+      I   +      P+  TF
Sbjct: 594 GQTDRAVTILKHMTGVASMPNHFTF 618



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 138/352 (39%), Gaps = 45/352 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD  L  R  RP   +FN +   L K   +D   +  + +   G  PD YTY+ 
Sbjct: 422 DEACSLFD-GLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSP 480

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I   CK      G   +  +L+    P  V +T +I  L  E     A  ++ ++   G
Sbjct: 481 FIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQG 540

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP--DAITYSTIIDG--- 245
           C  DV TY T +   C  G    A N+  EM          C    DA+ Y+T+IDG   
Sbjct: 541 CSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKK--------CRTIVDAMAYNTLIDGHTS 592

Query: 246 -------------LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
                        +   A   N   F  +       ++A + PL                
Sbjct: 593 IGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKAT------------S 640

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           + K  +L    ELF+ + +  +  +  TY  ++ G   + ++DE     T  +   +  +
Sbjct: 641 VWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEV----TSLVSLMKEEN 696

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             L  D+Y  N L+NCFCK+   S  + +   ++   F P+ + +  L+  L
Sbjct: 697 LPLNEDIY--NALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGL 746



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 83/207 (40%), Gaps = 27/207 (13%)

Query: 198 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
           + +L+    R   T + L LF  M            P   TY+ +I  LC+ A   +   
Sbjct: 96  FRSLLTHFSRYALTPLMLRLFAHMYRHAPP-----APTGATYNALIRALCRRADLRHAQR 150

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
           +  +   S     AF             F  LI G C+  +L++A +LF  +P  G   +
Sbjct: 151 YLSLMVRSGWRPDAF------------TFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQD 198

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
            V+Y  LI G C  G++DE         LF+ +      PD+YT+  L+   C  GR   
Sbjct: 199 AVSYAALIEGFCEAGRIDE------ALELFREMTQ----PDMYTHAALVKGLCDAGRGEE 248

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G  +  ++    + P    + +L+ + 
Sbjct: 249 GLCMLQKMKELGWRPTTRAYAALVDLW 275



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
           T  +IL G  ++ +  D V SL   +    L  +   YN L+NCFCK+   S  + +L  
Sbjct: 668 TYLSILEG-FSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLCS 726

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           ++   F P+ + +  L+  L AE +   A  +F   R      D   +  +I+G  R GH
Sbjct: 727 MIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVWKVIIDGFIRKGH 786

Query: 211 TIV---ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
             +    +++ E+M          C+P   TY+ + + L
Sbjct: 787 ADMCHDMISMLEQMK---------CKPSDETYAMLTEEL 816


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 145/329 (44%), Gaps = 29/329 (8%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VFD M+      P   SF  L     +    + V +L   +   G   D  T  +++  F
Sbjct: 171 VFDGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVF 230

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ GR      +  R+L     P+ V +T+ I  LC  + + +A  +  ++   G + +V
Sbjct: 231 CQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNV 290

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           +T+ +LINGLC+ G T  A  LF ++   +       +P+  TY+ +I G CKE      
Sbjct: 291 YTHTSLINGLCKIGWTERAFRLFLKLIKSSSY-----KPNVHTYTVMIGGYCKEG----- 340

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRA 312
                      L +       +  Q L  N   +  LI G CK      A EL   + R 
Sbjct: 341 ----------KLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRRE 390

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  PN+ TYN LI GLC  G++ E       + + +  N+ GL  D  TY ++I   CK 
Sbjct: 391 GFQPNIYTYNALIDGLCKKGKIQE------AYKVLRMANNQGLQLDKVTYTVMITEHCKQ 444

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G ++    +F R+  +   PD  T+T+LI
Sbjct: 445 GHITYALDLFNRMAENGCHPDIHTYTTLI 473



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 148/330 (44%), Gaps = 26/330 (7%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F  ML M  + P V ++      L K  +      + + +   GL P+ YT+  LIN  
Sbjct: 242 LFRRMLEM-GTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGL 300

Query: 136 CKMGRVSHGFVVLGRILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
           CK+G     F +  ++++S  + P+  T+T +I   C E ++  A  L  ++   G   +
Sbjct: 301 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPN 360

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
             TY TLI+G C+ G    A  L  +M           +P+  TY+ +IDGLCK+     
Sbjct: 361 TNTYTTLISGHCKEGSFNCAFELMNKMRREG------FQPNIYTYNALIDGLCKKGKIQE 414

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                 MA+   L            Q   + +  +I   CK   +  A +LF  +   G 
Sbjct: 415 AYKVLRMANNQGL------------QLDKVTYTVMITEHCKQGHITYALDLFNRMAENGC 462

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            P++ TY  LI   C   QM+E++       LF +  +  L P   TY  +I  +CK+G+
Sbjct: 463 HPDIHTYTTLIARYCQQRQMEESQK------LFDKCLAIELVPTKQTYTSMIAGYCKVGK 516

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +S   +F R++ +    D++T+ +LI  L
Sbjct: 517 STSALRVFERMVQNGCQADSITYGALISGL 546



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 142/343 (41%), Gaps = 48/343 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++ ++ G   K         L  R+   GL P+  TY  LI+  CK G  +  F 
Sbjct: 323 KPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFE 382

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++ ++ R  F P+  T+ +LI  LC + +I EA  +       G +LD  TY  +I   C
Sbjct: 383 LMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHC 442

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + GH   AL+LF  MA  NG     C PD  TY+T+I   C++           M     
Sbjct: 443 KQGHITYALDLFNRMAE-NG-----CHPDIHTYTTLIARYCQQRQ---------MEESQK 487

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L        LV  +     +  +I G CK+ K   A  +F+ + + G   + +TY  LI 
Sbjct: 488 LFDKCLAIELVPTK---QTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALIS 544

Query: 327 GLCNDGQMDETKH-YETVFLLFKRLNSTGLFP---------------------------D 358
           GLC + +++E +  YE   +L KRL    + P                            
Sbjct: 545 GLCKESRLEEARALYEG--MLDKRLVPCEVTPVTLAFEYCRREKAVVAVSILDRLDKRRK 602

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +T N+L+     IG V    +   + L      D + +TS I
Sbjct: 603 NHTVNVLVRKLSAIGHVEDASLFLKKALDVDLAVDRLAYTSFI 645



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 143/317 (45%), Gaps = 29/317 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF-PDRYTYNILINCFCKMGRVSHGF 145
           +P V +   L   L K    +    LF +L  +  + P+ +TY ++I  +CK G+++   
Sbjct: 287 KPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAE 346

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           ++LGR++     P+  T+T+LI   C E     A  L  K+R  G + +++TYN LI+GL
Sbjct: 347 MLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGL 406

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G    A  +   MAN  G      + D +TY+ +I   CK+ G   +       +  
Sbjct: 407 CKKGKIQEAYKVLR-MANNQG-----LQLDKVTYTVMITEHCKQ-GHITY-------ALD 452

Query: 266 ALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
             N+MA     P +        +  LI   C+  +++ +++LF       L+P   TY  
Sbjct: 453 LFNRMAENGCHPDIHT------YTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTS 506

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +I G C  G+        +   +F+R+   G   D  TY  LI+  CK  R+     ++ 
Sbjct: 507 MIAGYCKVGKS------TSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALYE 560

Query: 384 RILPSCFTPDAVTFTSL 400
            +L     P  VT  +L
Sbjct: 561 GMLDKRLVPCEVTPVTL 577



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 15/180 (8%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D+ +    + E CK   +G IT      AL +F+ M       P + ++  L     + +
Sbjct: 430 DKVTYTVMITEHCK---QGHITY-----ALDLFNRMAE-NGCHPDIHTYTTLIARYCQQR 480

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
             +    LF +     L P + TY  +I  +CK+G+ +    V  R++++    D++T+ 
Sbjct: 481 QMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYG 540

Query: 165 SLIKDLCAESRIMEAAALFTKL---RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           +LI  LC ESR+ EA AL+  +   R+  CE+   T  TL    CR    +VA+++ + +
Sbjct: 541 ALISGLCKESRLEEARALYEGMLDKRLVPCEV---TPVTLAFEYCRREKAVVAVSILDRL 597


>gi|255661026|gb|ACU25682.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 376

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 150/326 (46%), Gaps = 28/326 (8%)

Query: 75  CVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           C   + L        V SFN +   L      D V+S+++ +  +G   D  TY IL++ 
Sbjct: 44  CFXLWELMXXEGSXNVASFNXMMXGLFXNGEVDZVISIWELMKESGFVEDXTTYGILVHG 103

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
           FCK G  +    VL    +     DA  ++++I   C   +  +A ++   +   GC+ +
Sbjct: 104 FCKNGYNNKSLHVLEIAXQXGGVLDAFAYSAMINGXCKXGKXDKAVSVLNGMIXSGCKXN 163

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
              YN LINGL        A+ +F+E+   +      C P  +TY+T+I+GLCK      
Sbjct: 164 THVYNALINGLXXASKFEDAIRVFKELGTXH------CSPTIVTYNTLINGLCK------ 211

Query: 255 FLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
             G     ++  + +M    + P        + +  LI GLC+  K+++A +L+  +   
Sbjct: 212 --GERFAEAYDLVKEMLEKGWXPSX------ITYSLLIKGLCQDHKVEMALQLWNQVISK 263

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  P+V  +NIL  GLC+ G+ +          L+  +N     P+L T+N L+  F K 
Sbjct: 264 GFXPDVQMHNILXHGLCSVGKTZXASE------LYFDMNXWNCAPNLVTHNTLMEGFYKX 317

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFT 398
           G + +  VI+ RIL +   PD +++ 
Sbjct: 318 GDIRNALVIWXRILRNGLXPDIISYN 343



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 133/308 (43%), Gaps = 28/308 (9%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
           T++ IL     K  + +  L + +     G   D + Y+ +IN  CK G+      VL  
Sbjct: 95  TTYGILVHGFCKNGYNNKSLHVLEIAXQXGGVLDAFAYSAMINGXCKXGKXDKAVSVLNG 154

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           ++ S    +   + +LI  L   S+  +A  +F +L    C   + TYNTLINGLC+   
Sbjct: 155 MIXSGCKXNTHVYNALINGLXXASKFEDAIRVFKELGTXHCSPTIVTYNTLINGLCKGER 214

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A +L +EM     E G    P  ITYS +I GLC++             +    N++
Sbjct: 215 FAEAYDLVKEML----EKG--WXPSXITYSLLIKGLCQD--------HKVEMALQLWNQV 260

Query: 271 --AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
               + P V++  +      L  GLC + K + A EL+  +      PN+VT+N L+ G 
Sbjct: 261 ISKGFXPDVQMHNI------LXHGLCSVGKTZXASELYFDMNXWNCAPNLVTHNTLMEGF 314

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
              G +          +++ R+   GL PD+ +YNI +   C   R+S   +     +  
Sbjct: 315 YKXGDI------RNALVIWXRILRNGLXPDIISYNITLIGLCSCNRISVAILFLXDAVTK 368

Query: 389 CFTPDAVT 396
              P  +T
Sbjct: 369 NIVPTVIT 376



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 119/287 (41%), Gaps = 25/287 (8%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           B    ++K +  + + PD   YN ++N     GR    F  L  ++    + +  +F  +
Sbjct: 7   BXAERVYKEMAESKISPDAVVYNAMLNGXFXAGRXKBCF-XLWELMXXEGSXNVASFNXM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           +  L     + Z  +++  ++  G   D  TY  L++G C+ G+   +L++ E      G
Sbjct: 66  MXGLFXNGEVDZVISIWELMKESGFVEDXTTYGILVHGFCKNGYNNKSLHVLEIAXQXGG 125

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
                   DA  YS +I+G CK              + S LN M               +
Sbjct: 126 VL------DAFAYSAMINGXCKXGKXDK--------AVSVLNGMIXSGCKXNTHV----Y 167

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LI+GL   SK + A  +F+ L      P +VTYN LI GLC      + + +   + L
Sbjct: 168 NALINGLXXASKFEDAIRVFKELGTXHCSPTIVTYNTLINGLC------KGERFAEAYDL 221

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
            K +   G  P   TY++LI   C+  +V     ++ +++   F PD
Sbjct: 222 VKEMLEKGWXPSXITYSLLIKGLCQDHKVEMALQLWNQVISKGFXPD 268



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 108/269 (40%), Gaps = 25/269 (9%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   +  S  +PDAV + +++       R  +   L+  +   G   +V
Sbjct: 1   CESGDIBXAERVYKEMAESKISPDAVVYNAMLNGXFXAGRXKBCFXLWELMXXEG-SXNV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     ++++E M     E G V   D  TY  ++ G CK   +   
Sbjct: 60  ASFNXMMXGLFXNGEVDZVISIWELMK----ESGFV--EDXTTYGILVHGFCKNGYNNKS 113

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L    +A        AF +              +I+G CK  K   A  +   +  +G  
Sbjct: 114 LHVLEIAXQXGGVLDAFAYS------------AMINGXCKXGKXDKAVSVLNGMIXSGCK 161

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
            N   YN LI GL           +E    +FK L +    P + TYN LIN  CK  R 
Sbjct: 162 XNTHVYNALINGL------XXASKFEDAIRVFKELGTXHCSPTIVTYNTLINGLCKGERF 215

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +  + +   +L   + P  +T++ LIK L
Sbjct: 216 AEAYDLVKEMLEKGWXPSXITYSLLIKGL 244



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 8/161 (4%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L   L K + +     L K +   G  P   TY++LI   C+  +V     +
Sbjct: 197 PTIVTYNTLINGLCKGERFAEAYDLVKEMLEKGWXPSXITYSLLIKGLCQDHKVEMALQL 256

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++   F PD      L   LC+  +   A+ L+  +  + C  ++ T+NTL+ G  +
Sbjct: 257 WNQVISKGFXPDVQMHNILXHGLCSVGKTZXASELYFDMNXWNCAPNLVTHNTLMEGFYK 316

Query: 208 TGHTIVALNLFEE-MANGNGEFGVVCEPDAITYSTIIDGLC 247
            G    AL ++   + NG         PD I+Y+  + GLC
Sbjct: 317 XGDIRNALVIWXRILRNG-------LXPDIISYNITLIGLC 350



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 81/208 (38%), Gaps = 27/208 (12%)

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN-FLGFSCMASF 264
           C +G    A  +++EMA           PDA+ Y+ +++G        B F  +  M   
Sbjct: 1   CESGDIBXAERVYKEMAESK------ISPDAVVYNAMLNGXFXAGRXKBCFXLWELMXXE 54

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            + N  +F                ++ GL    ++     +++ +  +G + +  TY IL
Sbjct: 55  GSXNVASFNX--------------MMXGLFXNGEVDZVISIWELMKESGFVEDXTTYGIL 100

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + G C +G  +++ H      + +     G   D + Y+ +IN  CK G+      +   
Sbjct: 101 VHGFCKNGYNNKSLH------VLEIAXQXGGVLDAFAYSAMINGXCKXGKXDKAVSVLNG 154

Query: 385 ILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           ++ S    +   + +LI  L   S F  
Sbjct: 155 MIXSGCKXNTHVYNALINGLXXASKFED 182



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V   NIL   L      +    L+  +N     P+  T+N L+  F K G + +  V+
Sbjct: 267 PDVQMHNILXHGLCSVGKTZXASELYFDMNXWNCAPNLVTHNTLMEGFYKXGDIRNALVI 326

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
             RILR+   PD +++   +  LC+ +RI   A LF
Sbjct: 327 WXRILRNGLXPDIISYNITLIGLCSCNRI-SVAILF 361


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 163/354 (46%), Gaps = 36/354 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD M  +   RP   +++IL     +    DT LS    +  TGL    Y YN 
Sbjct: 384 HEAELLFDRMGKI-GLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNS 442

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK G +S     +  ++     P  VT+TSL+   C++ +I +A  L+ ++   G
Sbjct: 443 LINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKG 502

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
               ++T+ TL++GL R G    A+ LF EMA  N       +P+ +TY+ +I+G C+E 
Sbjct: 503 IAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWN------VKPNRVTYNVMIEGYCEEG 556

Query: 251 G-SANFLGFSCMASFSALNKMAFYFPLVRVQCLC-------------------LNFLC-- 288
             S  F     M     +     Y PL+   CL                    LN +C  
Sbjct: 557 DMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYT 616

Query: 289 -LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L+ G C+  KL+ A  + Q + + G+  ++V Y +LI     DG + + K  +  F L 
Sbjct: 617 GLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLI-----DGSL-KHKDRKLFFGLL 670

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K ++  GL PD   Y  +I+   K G     F I+  ++     P+ VT+T++I
Sbjct: 671 KEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVI 724



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 141/333 (42%), Gaps = 30/333 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           + + VF  M+      P V + + L   L K +H+   + LF  +   G+ PD Y Y  +
Sbjct: 174 DGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGV 233

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I   C++  +S    ++  +  +    + V +  LI  LC + ++ EA  +   L     
Sbjct: 234 IRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDL 293

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC---EPDAITYSTIIDGLCK 248
           + DV TY TL+ GLC+     + L + +EM         +C    P     S++++GL K
Sbjct: 294 KPDVVTYCTLVYGLCKVQEFEIGLEMMDEM---------LCLRFSPSEAAVSSLVEGLRK 344

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                  L          ++   F +              LID LCK  K   A  LF  
Sbjct: 345 RGKIEEALNLVKRVVDFGVSPNLFVYN------------ALIDSLCKGRKFHEAELLFDR 392

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + + GL PN VTY+ILI   C  G++D      T       +  TGL   +Y YN LIN 
Sbjct: 393 MGKIGLRPNDVTYSILIDMFCRRGKLD------TALSFLGEMVDTGLKLSVYPYNSLING 446

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            CK G +S+       ++     P  VT+TSL+
Sbjct: 447 HCKFGDISAAEGFMAEMINKKLEPTVVTYTSLM 479



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 150/357 (42%), Gaps = 36/357 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+AL ++  M   +   P + +F  L   L +       + LF  +    + P+R TYN+
Sbjct: 489 NKALRLYHEMTG-KGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNV 547

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I  +C+ G +S  F  L  +      PD  ++  LI  LC   +  EA      L    
Sbjct: 548 MIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGN 607

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           CEL+   Y  L++G CR G    AL++ +EM     +  +VC      Y  +IDG  K  
Sbjct: 608 CELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVC------YGVLIDGSLKHK 661

Query: 251 GSANFLG----------------FSCMASFSALN---KMAFYFPLVRVQCLCL----NFL 287
               F G                ++ M    +     K AF    + +   C+     + 
Sbjct: 662 DRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYT 721

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            +I+GLCK   +  A  L   +     +PN VTY   +  +   G++D  K  E    + 
Sbjct: 722 AVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFL-DILTKGEVDMQKAVELHNAIL 780

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K     GL  +  TYN+LI  FC+ GR+     +  R++    +PD +T+T++I  L
Sbjct: 781 K-----GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINEL 832



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 156/364 (42%), Gaps = 58/364 (15%)

Query: 72  EALCVFDYM--LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +A+ +F+ M   N++P+R    ++N++     +           K +   G+ PD Y+Y 
Sbjct: 525 DAVKLFNEMAEWNVKPNR---VTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYR 581

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI+  C  G+ S   V +  + +     + + +T L+   C E ++ EA ++  ++   
Sbjct: 582 PLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQR 641

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN------------------GNGEF--- 228
           G +LD+  Y  LI+G  +     +   L +EM +                    G+F   
Sbjct: 642 GVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEA 701

Query: 229 -GVV-------CEPDAITYSTIIDGLCKEAGSANFLGFSC--MASFSALNKMAFYFPLVR 278
            G+        C P+ +TY+ +I+GLCK AG  N     C  M   S++     Y     
Sbjct: 702 FGIWDLMINEGCVPNEVTYTAVINGLCK-AGFVNEAEVLCSKMQPVSSVPNQVTYG---- 756

Query: 279 VQCLCLNFLCLIDGLCKIS-KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                    C +D L K    ++ A EL  ++ + GL+ N  TYN+LIRG C  G+++E 
Sbjct: 757 ---------CFLDILTKGEVDMQKAVELHNAILK-GLLANTATYNMLIRGFCRQGRIEEA 806

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   L  R+   G+ PD  TY  +IN  C+   V     ++  +      PD V +
Sbjct: 807 SE------LITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAY 860

Query: 398 TSLI 401
            +LI
Sbjct: 861 NTLI 864



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 113/323 (34%), Gaps = 95/323 (29%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL V   M+  R     +  + +L     K K       L K ++  GL PD   Y  
Sbjct: 629 EEALSVCQEMVQ-RGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTS 687

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR--- 187
           +I+   K G     F +   ++     P+ VT+T++I  LC    + EA  L +K++   
Sbjct: 688 MIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVS 747

Query: 188 ------VFGCELDVFT--------------------------YNTLINGLCRTGHTIVAL 215
                  +GC LD+ T                          YN LI G CR G    A 
Sbjct: 748 SVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEAS 807

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            L   M  G+G       PD ITY+T+I+ LC+                           
Sbjct: 808 ELITRMI-GDG-----VSPDCITYTTMINELCRR-------------------------- 835

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                                + +K A EL+ S+   G+ P+ V YN LI G C  G+M 
Sbjct: 836 ---------------------NDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMG 874

Query: 336 ETKHYETVFLLFKRLNSTGLFPD 358
           +        L        GL P+
Sbjct: 875 KATELRNEML------RQGLIPN 891



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 126/337 (37%), Gaps = 80/337 (23%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P   L  F+++   R       SF IL   L K   +    SL + L L  L P    +N
Sbjct: 84  PKLGLRFFNFLGLHRGFDHSTASFCILIHALVKANLFWPASSLLQTLLLRALKPSD-VFN 142

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +L +C+ K                 C    + +F  LI+      R+++   +F K+ + 
Sbjct: 143 VLFSCYEK-----------------CKLSSSSSFDLLIQHYVRSRRVLDGVLVF-KMMIT 184

Query: 190 GCEL--DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
              L  +V T + L++GL +  H  +A+ LF +M +      V   PD   Y+ +I  L 
Sbjct: 185 KVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVS------VGIRPDVYIYTGVIRSL- 237

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
                                                         C++  L  A+E+  
Sbjct: 238 ----------------------------------------------CELKDLSRAKEMIA 251

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +   G   N+V YN+LI GLC      + K +E V +  K L    L PD+ TY  L+ 
Sbjct: 252 HMEATGCDVNIVPYNVLIDGLCK-----KQKVWEAVGIK-KDLAGKDLKPDVVTYCTLVY 305

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             CK+     G  +   +L   F+P     +SL++ L
Sbjct: 306 GLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGL 342


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 147/323 (45%), Gaps = 30/323 (9%)

Query: 83  MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142
           M  S   V  +N+L   L K K     + +   L   GL     TY  L+   CK+    
Sbjct: 254 MESSDLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFE 313

Query: 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
            G  V+  ++   F P     +SL++ L  + ++++A  L  +++  G    +F YN LI
Sbjct: 314 VGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALI 373

Query: 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG---SANFLGFS 259
           N LC+ G    A  LF+EM    GE G +C  D +TYS +ID  C+      + +FLG  
Sbjct: 374 NSLCKDGKFDEAELLFKEM----GEKG-LCAND-VTYSILIDSFCRRGKLDTAIHFLGKM 427

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            MA      K+  Y            +  LI+G CK+  L  A   F  +   GL P VV
Sbjct: 428 IMAGI----KITVY-----------PYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVV 472

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           +Y  LI G CN G++ E       F L+  +   G+ P+ YT+  LI+   +  R++  F
Sbjct: 473 SYTSLISGYCNKGKLHEA------FRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAF 526

Query: 380 VIFGRILPSCFTPDAVTFTSLIK 402
            +F  +L     P+ VT+  +I+
Sbjct: 527 RLFDEMLEQNMMPNEVTYNVMIE 549



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 146/348 (41%), Gaps = 58/348 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +F  L   L +         LF  +    + P+  TYN++I   CK G     F +
Sbjct: 504 PNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFEL 563

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++++    PD  T+  LI  LC+  R+ EA      L     +L+   Y+ L++G C+
Sbjct: 564 LNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCK 623

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    AL +  EM     +  +VC      Y+ +IDG  KE  ++        A F  L
Sbjct: 624 EGRLRDALGVCREMVKRGVDMDLVC------YAVLIDGTIKEQDTS--------AVFGLL 669

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             M       R++   + +  +IDG  K   +K A  ++  +   G  PN+VTY  LI  
Sbjct: 670 KNMHDQ----RLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINE 725

Query: 328 LCNDGQMDETKHYETVFLLFKRL---NST------------------------------- 353
           LC  G MD+ +      LL+K +   NST                               
Sbjct: 726 LCKAGLMDKAE------LLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK 779

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           GL  +  +YNIL+  FCK+GRV     +   ++ +   PD +T++++I
Sbjct: 780 GLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTII 827



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 156/345 (45%), Gaps = 51/345 (14%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            +++IL     +    DT +    ++ + G+    Y YN LIN  CK+G +S        
Sbjct: 402 VTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDE 461

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           ++     P  V++TSLI   C + ++ EA  L+ ++   G   + +T+ TLI+ L R   
Sbjct: 462 MIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANR 521

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A  LF+EM   N        P+ +TY+ +I+G CKE  +        + +F  LN+M
Sbjct: 522 MTDAFRLFDEMLEQN------MMPNEVTYNVMIEGHCKEGNT--------VKAFELLNQM 567

Query: 271 A---------FYFPLVRVQC----LC---------------LNFLC---LIDGLCKISKL 299
                      Y PL+   C    +C               LN +C   L+ G CK  +L
Sbjct: 568 VQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRL 627

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
           + A  + + + + G+  ++V Y +LI     DG + E +    VF L K ++   L PD 
Sbjct: 628 RDALGVCREMVKRGVDMDLVCYAVLI-----DGTIKE-QDTSAVFGLLKNMHDQRLRPDK 681

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             Y  +I+ + K G V   F I+  ++    TP+ VT+T+LI  L
Sbjct: 682 VIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINEL 726



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 145/331 (43%), Gaps = 31/331 (9%)

Query: 76  VFDYMLNMRPSR-----PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +FD +L  R  R     P V +   +   LAK +  D VL LF  +   G+ PD Y Y  
Sbjct: 174 MFDSVLIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVA 233

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I  FC++   +    ++ R+  S    + V +  LI  LC   R+ EA  +   L   G
Sbjct: 234 VIRSFCELKNFAKAKEMIQRMESSDL--NVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKG 291

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
                 TY TL+ GLC+     V   + +EM     E G V  P     S++++GL ++ 
Sbjct: 292 LTASEVTYCTLVLGLCKVQEFEVGAGVMDEMI----ELGFV--PTEAALSSLVEGLRRKG 345

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              +   F  +     +  M   F           +  LI+ LCK  K   A  LF+ + 
Sbjct: 346 KVVD--AFDLVNRVKKVGAMPSLFV----------YNALINSLCKDGKFDEAELLFKEMG 393

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL  N VTY+ILI   C  G++D   H+        ++   G+   +Y YN LIN  C
Sbjct: 394 EKGLCANDVTYSILIDSFCRRGKLDTAIHF------LGKMIMAGIKITVYPYNSLINGHC 447

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K+G +S+    F  ++     P  V++TSLI
Sbjct: 448 KLGNLSAAVSFFDEMIDKGLKPTVVSYTSLI 478



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 147/328 (44%), Gaps = 29/328 (8%)

Query: 76  VFDYMLNMR--PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           V D M+ +   P+   ++S  ++ G   K K  D    L  R+   G  P  + YN LIN
Sbjct: 318 VMDEMIELGFVPTEAALSS--LVEGLRRKGKVVDA-FDLVNRVKKVGAMPSLFVYNALIN 374

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK G+     ++   +       + VT++ LI   C   ++  A     K+ + G ++
Sbjct: 375 SLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKI 434

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
            V+ YN+LING C+ G+   A++ F+EM +         +P  ++Y+++I G C +    
Sbjct: 435 TVYPYNSLINGHCKLGNLSAAVSFFDEMIDKG------LKPTVVSYTSLISGYCNKG--- 485

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
                    +F   ++M        +      F  LI  L + +++  A  LF  +    
Sbjct: 486 -----KLHEAFRLYHEMTGK----GIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQN 536

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           +MPN VTYN++I G C +G  +  K +E    L  ++   GL PD YTY  LI+  C  G
Sbjct: 537 MMPNEVTYNVMIEGHCKEG--NTVKAFE----LLNQMVQKGLVPDTYTYRPLISSLCSTG 590

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           RV         +    F  + + +++L+
Sbjct: 591 RVCEAKKFIDDLHREHFKLNEMCYSALL 618



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 152/382 (39%), Gaps = 62/382 (16%)

Query: 72  EALCVFDYML--NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +A  +FD ML  NM P+     ++N++     K  +      L  ++   GL PD YTY 
Sbjct: 524 DAFRLFDEMLEQNMMPNE---VTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYR 580

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI+  C  GRV      +  + R  F  + + +++L+   C E R+ +A  +  ++   
Sbjct: 581 PLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKR 640

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN---------------GNGEFGVV--- 231
           G ++D+  Y  LI+G  +   T     L + M +               G  + G V   
Sbjct: 641 GVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKA 700

Query: 232 -----------CEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMA---FYFP 275
                      C P+ +TY+T+I+ LCK      A  L    + S S  N +    F   
Sbjct: 701 FGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDH 760

Query: 276 LVRVQCL-----------------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
           L R   +                  +++  L+ G CK+ +++ A +L   +    + P+ 
Sbjct: 761 LAREGSMEKAVQLHNDMLKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDC 820

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           +TY+ +I   C  G +D    +    L      + GL PD   YN LI   C  G +   
Sbjct: 821 ITYSTIIYQCCRRGNLDGAIEFWDTML------NKGLKPDTLAYNFLIYGCCIAGELGKA 874

Query: 379 FVIFGRILPSCFTPDAVTFTSL 400
           F +   ++     P+  T  SL
Sbjct: 875 FELRDDMIRRGVKPNQATHKSL 896



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 109/263 (41%), Gaps = 21/263 (7%)

Query: 67  SITPNEALCVFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           +I   +   VF  + NM   R  P    +  +    +K         ++  +   G  P+
Sbjct: 656 TIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPN 715

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
             TY  LIN  CK G +    ++   +L S  TP+ VT+   +  L  E  + +A  L  
Sbjct: 716 IVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHN 775

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
            + + G   +  +YN L+ G C+ G    A  L +EM + N  F     PD ITYSTII 
Sbjct: 776 DM-LKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMID-NAIF-----PDCITYSTIIY 828

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
             C+       + F      + LNK       ++   L  NFL  I G C   +L  A E
Sbjct: 829 QCCRRGNLDGAIEFW----DTMLNKG------LKPDTLAYNFL--IYGCCIAGELGKAFE 876

Query: 305 LFQSLPRAGLMPNVVTYNILIRG 327
           L   + R G+ PN  T+  L  G
Sbjct: 877 LRDDMIRRGVKPNQATHKSLSHG 899



 Score = 38.9 bits (89), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 14/132 (10%)

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLP-RAGLMPNVVTYNIL--------IRGLCND--- 331
           ++F  LI  L   +    A  L Q+L  R GL P  V   +L        I  L  D   
Sbjct: 106 MSFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLDCFEKCDFISSLGFDLLI 165

Query: 332 -GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
              + E + +++V L+F+ +    L P + T   ++N   KI RV    V+FG IL    
Sbjct: 166 QSYVQEKRMFDSV-LIFRLMRQCELMPQVRTLGEVLNGLAKIRRVDMVLVLFGEILSMGI 224

Query: 391 TPDAVTFTSLIK 402
            PD   + ++I+
Sbjct: 225 RPDIYIYVAVIR 236



 Score = 37.7 bits (86), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 46/117 (39%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            S+NIL     K    +    L   +    +FPD  TY+ +I   C+ G +         
Sbjct: 786 VSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDT 845

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +L     PD + +  LI   C    + +A  L   +   G + +  T+ +L +G  R
Sbjct: 846 MLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHGASR 902


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 162/362 (44%), Gaps = 45/362 (12%)

Query: 52  FLKERCKSSGEGDITSI-----TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY 106
            +K  CK+   GD  S+      P   +C    MLN           NI+ G     +  
Sbjct: 178 LVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLN-----------NIVDGLCKTGRLQ 226

Query: 107 DTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
             V  + +R+ ++ G  P+  TYN L + FC+ G V     ++ ++ +   TP+AVT  +
Sbjct: 227 QAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNT 286

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCEL--DVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           ++  LC   R+  A   F + R    E   +  TY+TL+     T +  VA+ LF EM +
Sbjct: 287 IVGGLCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVD 346

Query: 224 -GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
            GN        PDAI Y T+I GL  +AG  +       +  +++ K  F       Q  
Sbjct: 347 EGN-------SPDAIMYFTMISGLT-QAGRLD----DAWSMATSMKKAGF-------QLD 387

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
              +  LI G C+  +L  A EL   +  AGL P+V TYN L+ GLC  G       +  
Sbjct: 388 AKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGD------FLA 441

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           V  L  ++   G  P + T+  LI+ +CK+G++     IF  +  S   P+ V + +LI 
Sbjct: 442 VDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLID 501

Query: 403 IL 404
            L
Sbjct: 502 FL 503



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 155/358 (43%), Gaps = 46/358 (12%)

Query: 88  PPVTS-FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           PP TS FN L   LA+      +  LF  +    + P+  TY IL+   CK GRV     
Sbjct: 134 PPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALS 193

Query: 147 VLGRIL--RSCFTPDAVTFTSLIKDLCAESRIMEAAALF-TKLR-VFGCELDVFTYNTLI 202
           VL  +    S   PD V   +++  LC   R+ +A      ++R V GC  +  TYN L 
Sbjct: 194 VLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLA 253

Query: 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSA------- 253
           +  CR G+  +A  L  +M            P+A+T +TI+ GLC     G+A       
Sbjct: 254 HAFCRAGNVGMACELVAKMEKER------VTPNAVTLNTIVGGLCWVGRVGAALEFFREK 307

Query: 254 ---------NFLGFSCM-ASFSALNKMAFYFPLVRVQCLCLN------FLCLIDGLCKIS 297
                    N + +S +  +F   N +     L        N      +  +I GL +  
Sbjct: 308 RTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAG 367

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           +L  A  +  S+ +AG   +   YNILI G C   +++E   YE    L   +   GL P
Sbjct: 368 RLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEA--YE----LLGEMKEAGLQP 421

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----KILEINSFFR 411
           D+YTYN L++  CK G   +   + G+++     P  VTF +LI    K+ +I+   R
Sbjct: 422 DVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALR 479



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 128/289 (44%), Gaps = 24/289 (8%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           +R    +++ L G    T +    + LF  +   G  PD   Y  +I+   + GR+   +
Sbjct: 314 ARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAW 373

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +   + ++ F  DA  +  LI   C   R+ EA  L  +++  G + DV+TYNTL++GL
Sbjct: 374 SMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGL 433

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G  +    L  +M +G       C P  +T+ T+I G CK  G  +      +  F 
Sbjct: 434 CKAGDFLAVDELLGKMIDGG------CRPSVVTFGTLIHGYCK-VGQID----EALRIFR 482

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           ++++         +Q   + +  LID LCK     +A ELF  +    +  NV T+N L+
Sbjct: 483 SMDESG-------IQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALL 535

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
           +GL  D  M      E  F L   +      PD  T +IL+     IG 
Sbjct: 536 KGL-RDKNMP-----EKAFELMDLMREGRCTPDYVTIDILMEWLPVIGE 578



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 122/280 (43%), Gaps = 19/280 (6%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ +F  M++   S   +  F ++ G L +    D   S+   +   G   D   YNILI
Sbjct: 337 AMELFHEMVDEGNSPDAIMYFTMISG-LTQAGRLDDAWSMATSMKKAGFQLDAKAYNILI 395

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
             FC+  R++  + +LG +  +   PD  T+ +L+  LC     +    L  K+   GC 
Sbjct: 396 GGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCR 455

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
             V T+ TLI+G C+ G    AL +F  M     E G+  +P+ + Y+T+ID LCK   +
Sbjct: 456 PSVVTFGTLIHGYCKVGQIDEALRIFRSM----DESGI--QPNTVIYNTLIDFLCKSRDT 509

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
           +  +       F  + +         V      F  L+ GL   +  + A EL   +   
Sbjct: 510 SLAIEL-----FDEMREK-------HVPANVTTFNALLKGLRDKNMPEKAFELMDLMREG 557

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
              P+ VT +IL+  L   G+ D  KH+       KR+ +
Sbjct: 558 RCTPDYVTIDILMEWLPVIGETDRLKHFMQHDTTPKRMTT 597


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 149/340 (43%), Gaps = 36/340 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   + N +   + +    +   +LF  +   G+ P+  +Y +++  +CK+G V      
Sbjct: 165 PSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRW 224

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           LG ++   F  D  T + ++++ C +  +  A   F +    G   ++  +  +I GLC+
Sbjct: 225 LGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCK 284

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-----------------EA 250
            G    A  + EEM  G G      +P+  T++ +IDGLCK                 E 
Sbjct: 285 RGSVKQAFEMLEEMV-GRG-----WKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSEN 338

Query: 251 GSANFLGFSCMASF----SALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIAR 303
              N L ++ M S       +N+       ++ Q L  N   +  LIDG CK    + A 
Sbjct: 339 HKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAY 398

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           EL   +   G  PNV TYN ++ GLC  G++ E       + + K     GL  D  TY 
Sbjct: 399 ELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQE------AYKVLKSGFRNGLDADKVTYT 452

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
           ILI+  CK   +    V+F +++ S   PD  ++T+LI +
Sbjct: 453 ILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAV 492



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 164/360 (45%), Gaps = 34/360 (9%)

Query: 43  VKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAK 102
           V D A+L   ++E C+   +G +T      AL  F     M   RP + +F  +   L K
Sbjct: 234 VVDNATLSLIVREFCE---KGFVT-----RALWYFRRFCEM-GLRPNLINFTCMIEGLCK 284

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAV 161
                    + + +   G  P+ YT+  LI+  CK G     F +  +++RS    P+ +
Sbjct: 285 RGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVL 344

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           T+T++I   C + ++  A  L ++++  G   +  TY TLI+G C+ G+   A     E+
Sbjct: 345 TYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAY----EL 400

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
            N   E G    P+  TY+ I+DGLCK+             ++  L K  F   L   + 
Sbjct: 401 MNVMNEEGF--SPNVCTYNAIVDGLCKKG--------RVQEAYKVL-KSGFRNGLDADK- 448

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             + +  LI   CK +++K A  LF  + ++G+ P++ +Y  LI   C + +M E++   
Sbjct: 449 --VTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESE--- 503

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              + F+     GL P   TY  +I  +C+ G +      F R+       D++T+ +LI
Sbjct: 504 ---MFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALI 560



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 132/315 (41%), Gaps = 24/315 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  +F  ++     +P V ++  +     + +  +    L  R+   GL P+  TY  
Sbjct: 324 EKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTT 383

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G     + ++  +    F+P+  T+ +++  LC + R+ EA  +       G
Sbjct: 384 LIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNG 443

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D  TY  LI+  C+      AL LF +M       G+  +PD  +Y+T+I   C+E 
Sbjct: 444 LDADKVTYTILISEHCKQAEIKQALVLFNKMVKS----GI--QPDIHSYTTLIAVFCREK 497

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                     M       + A  F LV       + +C   G C+   L++A + F  + 
Sbjct: 498 R---------MKESEMFFEEAVRFGLVPTNKTYTSMIC---GYCREGNLRLALKFFHRMS 545

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G   + +TY  LI GLC   ++DE +       L+  +   GL P   T   L   +C
Sbjct: 546 DHGCASDSITYGALISGLCKQSKLDEAR------CLYDAMIEKGLTPCEVTRVTLAYEYC 599

Query: 371 KIGRVSSGFVIFGRI 385
           KI    S  V+  R+
Sbjct: 600 KIDDGCSAMVVLERL 614



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 136/316 (43%), Gaps = 31/316 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  L     K  +++    L   +N  G  P+  TYN +++  CK GRV   + V
Sbjct: 376 PNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKV 435

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L    R+    D VT+T LI + C ++ I +A  LF K+   G + D+ +Y TLI   CR
Sbjct: 436 LKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCR 495

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 +   FEE       FG+V  P   TY+++I G C+E      L F         
Sbjct: 496 EKRMKESEMFFEEAV----RFGLV--PTNKTYTSMICGYCREGNLRLALKF--------F 541

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           ++M+ +          + +  LI GLCK SKL  AR L+ ++   GL P  VT   L   
Sbjct: 542 HRMSDH----GCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYE 597

Query: 328 LC--NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            C  +DG         +  ++ +RL        + T N L+   C   +V    + F ++
Sbjct: 598 YCKIDDGC--------SAMVVLERLEKKLW---VRTVNTLVRKLCSERKVGMAALFFHKL 646

Query: 386 LPSCFTPDAVTFTSLI 401
           L      + VT  + +
Sbjct: 647 LDKDPNVNRVTIAAFM 662



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 113/261 (43%), Gaps = 38/261 (14%)

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANG 224
           ++K      R+ EA  +  ++   G      T N ++  +   G    A NLF+EM A G
Sbjct: 138 MVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARG 197

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAG---SANFLGFSCMASFSALN------------- 268
                   +P+ ++Y  ++ G CK      S  +LG      F   N             
Sbjct: 198 -------VQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEK 250

Query: 269 ----KMAFYFPL---VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
               +  +YF     + ++   +NF C+I+GLCK   +K A E+ + +   G  PNV T+
Sbjct: 251 GFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTH 310

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRL-NSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
             LI GLC  G        E  F LF +L  S    P++ TY  +I+ +C+  +++   +
Sbjct: 311 TALIDGLCKKGWT------EKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEM 364

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +  R+      P+  T+T+LI
Sbjct: 365 LLSRMKEQGLAPNTNTYTTLI 385


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 167/384 (43%), Gaps = 63/384 (16%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L  R   P V SFN +  CL K +  D  LSLF+ +      P+  TYNI+I+  C  GR
Sbjct: 79  LRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAE-PNSSTYNIIIDMLCLGGR 137

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V   + +L  +  +   P+ +T   ++  LC   ++ EA  +F      GC  D  TY +
Sbjct: 138 VEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS 197

Query: 201 LINGLCRTGHTIVALNLFEEMAN--------------------GNGEFGVV--------- 231
           LI+GL + G    A  LFE+M +                    G  E G           
Sbjct: 198 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRG 257

Query: 232 CEPDAITYSTIIDGLCK----EAGSANF-----LGF-SCMASFSAL----------NKMA 271
           C+PD    +T +D + K    E G   F      GF   + S+S L           + +
Sbjct: 258 CKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETS 317

Query: 272 FYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
             F  ++ Q   L+   +  ++DG CK  K+  A E+ + +    + P V TY  ++ GL
Sbjct: 318 NIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL 377

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
               ++DE       ++LF+   S G+  ++  Y+ LI+ F K+GR+   ++I   ++  
Sbjct: 378 AKIDRLDEA------YMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK 431

Query: 389 CFTPDAVTFTS----LIKILEINS 408
             TP+  T+ S    L+K  EIN 
Sbjct: 432 GLTPNVYTWNSLLDALVKAEEINE 455



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 153/364 (42%), Gaps = 54/364 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F+ ML+   +  PV   +++       +  D    +FK L   G  PD    N 
Sbjct: 209 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDG-HKIFKELIRRGCKPDLTLLNT 267

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            ++C  K G V  G ++   I    F PD  +++ LI  L    +  E + +F  ++  G
Sbjct: 268 YMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQG 327

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             LD   YN +++G C++G    A  + EEM           +P   TY  I+DGL K  
Sbjct: 328 FALDARAYNAVVDGFCKSGKVHKAYEILEEMKEK------CVQPTVATYGAIVDGLAK-- 379

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQ 307
                           L++    F   + + + LN   +  LIDG  K+ ++  A  + +
Sbjct: 380 -------------IDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILE 426

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDET-----------------------------K 338
            + + GL PNV T+N L+  L    +++E                              +
Sbjct: 427 EMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQ 486

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
            Y   F+ ++ +   GL P++ TY  +I+   K+G ++  + +F R   +   PDA +F 
Sbjct: 487 KYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFN 546

Query: 399 SLIK 402
           +LI+
Sbjct: 547 ALIE 550



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 132/292 (45%), Gaps = 24/292 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++IL   L K        ++F  +   G   D   YN +++ FCK G+V   + +
Sbjct: 295 PDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEI 354

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +   C  P   T+ +++  L    R+ EA  LF + +  G EL+V  Y++LI+G  +
Sbjct: 355 LEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGK 414

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  + EEM            P+  T+++++D L K A   N      +  F ++
Sbjct: 415 VGRIDEAYLILEEMMKKG------LTPNVYTWNSLLDALVK-AEEIN----EALVCFQSM 463

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +M       +       +  LI+GLC++ K   A   +Q + + GL+PNVVTY  +I G
Sbjct: 464 KEM-------KCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISG 516

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           L   G + +       + LF+R  + G  PD  ++N LI       R    +
Sbjct: 517 LAKVGNITDA------YSLFERFKANGGIPDAASFNALIEGMSNANRAMEAY 562



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 137/327 (41%), Gaps = 52/327 (15%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
               F  L   GL PD  +Y  +I   CK GR+     +  ++      P A  + ++I 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
              +  R  +A  L  +LR  GC   V ++N+++  L +      AL+LFE M       
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKD---- 117

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNF 286
               EP++ TY+ IID LC        LG     ++  L++M  A  FP      L +N 
Sbjct: 118 ---AEPNSSTYNIIIDMLC--------LGGRVEEAYRILDEMEHASLFP----NLLTVNI 162

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET--------- 337
             ++D LCK  KL+ A ++F+S  + G  P+ VTY  LI GL   GQ+DE          
Sbjct: 163 --MVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLD 220

Query: 338 --------------------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
                                  E    +FK L   G  PDL   N  ++C  K G V  
Sbjct: 221 AGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEK 280

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G +IF  I    F PD  +++ LI  L
Sbjct: 281 GRMIFEDIRSYGFLPDVRSYSILIHGL 307



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
           +A + F  L   GL P+ V+Y  +I  LC  G++ E +       LF ++ +    P  Y
Sbjct: 1   MAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEE------LFAQMEAERSVPCAY 54

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            YN +I  +   GR    + +  R+      P  V+F S++  L
Sbjct: 55  AYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL 98


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 158/322 (49%), Gaps = 28/322 (8%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM---GR 140
           R  +P V +FN++   L KT   +    + + + + G  P+  +YN LI+ +CK+   G+
Sbjct: 217 RKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGK 276

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     VL  ++ +  +P+  TF  LI     +  +  +  +F ++       +V TYN+
Sbjct: 277 MYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNS 336

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LINGLC  G    A+ + ++M +     GV  +P+ ITY ++I+G CK     N +    
Sbjct: 337 LINGLCNGGKINEAIGMRDKMVSA----GV--QPNLITYHSLINGFCK-----NGMMKEA 385

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           +  F ++ K     P  R+      +  LID  CK+ K+     L + + R G++P+V T
Sbjct: 386 LDMFDSV-KGQGTRPTTRM------YNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGT 438

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN LI GLC +G ++  K       LF +L + GL PDL T++IL+  +C  G      +
Sbjct: 439 YNCLIAGLCRNGNIEAAKK------LFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAM 491

Query: 381 IFGRILPSCFTPDAVTFTSLIK 402
           +   +      P  +T+  ++K
Sbjct: 492 LLKEMSKMGLKPRHLTYNIMMK 513



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 153/343 (44%), Gaps = 34/343 (9%)

Query: 57  CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
           CK  G G +      +A  V   M+    S P +T+FNIL     K  +    L +FK +
Sbjct: 269 CKLGGNGKMY-----KADAVLKEMVENEVS-PNLTTFNILIDGFWKDDNLPGSLKVFKEM 322

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
               + P+  TYN LIN  C  G+++    +  +++ +   P+ +T+ SLI   C    +
Sbjct: 323 LDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMM 382

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
            EA  +F  ++  G       YN LI+  C+ G       L EEM       G+V  PD 
Sbjct: 383 KEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEME----REGIV--PDV 436

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLC 294
            TY+ +I GLC+              +  A  K+   F  +  + L   + F  L++G C
Sbjct: 437 GTYNCLIAGLCRN------------GNIEAAKKL---FDQLTNKGLPDLVTFHILMEGYC 481

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
              + + A  L + + + GL P  +TYNI+++G C +G +    +  T     +RL    
Sbjct: 482 SRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRM-- 539

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
              ++ +YN+L+  + + G++    ++   +L     P+ +T+
Sbjct: 540 ---NVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 133/311 (42%), Gaps = 27/311 (8%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           ++L    A    ++     FKR    G      +   L+    K  R +    +   ++R
Sbjct: 157 DMLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIR 216

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR---TGH 210
               P+  TF  +I  LC   ++ +A  +   ++V+G   +V +YNTLI+G C+    G 
Sbjct: 217 RKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGK 276

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A  + +EM            P+  T++ +IDG  K+    N  G     S     +M
Sbjct: 277 MYKADAVLKEMVENE------VSPNLTTFNILIDGFWKD---DNLPG-----SLKVFKEM 322

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                +  V    + +  LI+GLC   K+  A  +   +  AG+ PN++TY+ LI G C 
Sbjct: 323 LDQDVIPNV----ITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCK 378

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
           +G M E         +F  +   G  P    YN+LI+ +CK+G++  GF +   +     
Sbjct: 379 NGMMKEA------LDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGI 432

Query: 391 TPDAVTFTSLI 401
            PD  T+  LI
Sbjct: 433 VPDVGTYNCLI 443



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 119/262 (45%), Gaps = 19/262 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA+ + D M++    +P + +++ L     K       L +F  +   G  P    YN+
Sbjct: 348 NEAIGMRDKMVSA-GVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNM 406

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ +CK+G++  GF +   + R    PD  T+  LI  LC    I  A  LF +L   G
Sbjct: 407 LIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKG 466

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ T++ L+ G C  G +  A  L +EM+    + G+  +P  +TY+ ++ G CKE 
Sbjct: 467 LP-DLVTFHILMEGYCSRGESRKAAMLLKEMS----KMGL--KPRHLTYNIMMKGYCKEG 519

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                         +A N         R++    ++  L+ G  +  KL+ A  L   + 
Sbjct: 520 NLK-----------AATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEML 568

Query: 311 RAGLMPNVVTYNILIRGLCNDG 332
             GL+PN +TY I+   + + G
Sbjct: 569 EKGLVPNRITYEIVKEEMVDKG 590


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 148/329 (44%), Gaps = 27/329 (8%)

Query: 74  LCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           L VFD M+      P V + N +   L          +++  +   G+ P   TYN +++
Sbjct: 165 LLVFDKMIR-NGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLD 223

Query: 134 CFCKMGRVSHGFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
            +CK GRV     +L  +  R C+ P+ VT+  L+  L  +  + +A  L  ++   G  
Sbjct: 224 SYCKEGRVDQALELLSEMQERGCY-PNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLN 282

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           +  +TYN LING C+ G  + A +L EEM N          P   TY+T++ GLCK    
Sbjct: 283 VSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRA------FPTLSTYNTLMYGLCKWVQV 336

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                      FS + K  F   +V       +F  L+ G C+   +  A  LF  L   
Sbjct: 337 T-----GVRLRFSDMLKSKFTPDIV-------SFNSLLYGYCRTGCISEAFLLFDELKCR 384

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
            L+P V+TYN LI GLC  G +D          L K +   GLFPD++TY IL+N   K+
Sbjct: 385 DLVPTVITYNTLIHGLCMWGYLD------AALRLKKEMTDQGLFPDIFTYTILVNGCFKL 438

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G VS     F  +L     PD   + + I
Sbjct: 439 GYVSMARGFFNEMLSKGLKPDRFAYNTRI 467



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 153/359 (42%), Gaps = 63/359 (17%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P   ++N+L   L+K    +    L + +  +GL    YTYN LIN FC+ G 
Sbjct: 241 MQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGL 300

Query: 141 VSHGFVVLGRI-----------------------------------LRSCFTPDAVTFTS 165
               F ++  +                                   L+S FTPD V+F S
Sbjct: 301 FVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNS 360

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
           L+   C    I EA  LF +L+       V TYNTLI+GLC  G+   AL L +EM +  
Sbjct: 361 LLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTD-Q 419

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR--VQCLC 283
           G F     PD  TY+ +++G  K       LG+  MA         F+  ++   ++   
Sbjct: 420 GLF-----PDIFTYTILVNGCFK-------LGYVSMAR-------GFFNEMLSKGLKPDR 460

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             +   I G  KI+   +A  + + +  AG  P+V+TYN+ +  LC  G  +E       
Sbjct: 461 FAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACD---- 516

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             L + + S GL PD  TY  +IN F K G +     +F  +L     P  VT+T LI 
Sbjct: 517 --LLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIH 573



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 147/338 (43%), Gaps = 31/338 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD  L  R   P V ++N L   L    + D  L L K +   GLFPD +TY I
Sbjct: 372 SEAFLLFDE-LKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTI 430

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT---KLR 187
           L+N   K+G VS        +L     PD   + + I     E +I + +  F+   ++ 
Sbjct: 431 LVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRI---VGEMKIADTSVAFSMQEEML 487

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G   DV TYN  ++ LC+ G+   A +L E M +     G++  PD +TY++II+G  
Sbjct: 488 AAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSD----GLI--PDHVTYTSIINGFV 541

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K              +    N+M        V    + +  LI        L +A   F 
Sbjct: 542 KNG--------HLRKAREVFNEMLSK----GVAPSVVTYTVLIHAHAAKQMLDLAFMYFS 589

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +    +  NV+TYN +I GLC   +MDE   Y      F  +   G+ P+ ++Y ILIN
Sbjct: 590 KMLEKSVPANVITYNAIINGLCMTRRMDEAYKY------FDEMEEKGILPNKFSYTILIN 643

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
             C +G       ++  +L     PD+ T +  +K L 
Sbjct: 644 ESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLH 681



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 153/370 (41%), Gaps = 45/370 (12%)

Query: 10  RMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFL---KERCKSSGEGDIT 66
           R+RF+D L  K T       P   +  + L    +     E FL   + +C+      IT
Sbjct: 340 RLRFSDMLKSKFT-------PDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVIT 392

Query: 67  SITPNEALCVFDYM---LNMRPSR------PPVTSFNILFGCLAKTKHYDTVLSLFKRLN 117
             T    LC++ Y+   L ++         P + ++ IL     K  +       F  + 
Sbjct: 393 YNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEML 452

Query: 118 LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177
             GL PDR+ YN  I    K+   S  F +   +L + F PD +T+   +  LC +    
Sbjct: 453 SKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFE 512

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           EA  L   +   G   D  TY ++ING  + GH   A  +F EM +     GV   P  +
Sbjct: 513 EACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSK----GVA--PSVV 566

Query: 238 TYSTIIDG-LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           TY+ +I     K+     F+ FS M   S             V    + +  +I+GLC  
Sbjct: 567 TYTVLIHAHAAKQMLDLAFMYFSKMLEKS-------------VPANVITYNAIINGLCMT 613

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            ++  A + F  +   G++PN  +Y ILI   CN G      ++E    L++ +    + 
Sbjct: 614 RRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMG------YWEEALRLYREMLDRKIQ 667

Query: 357 PDLYTYNILI 366
           PD +T+++ +
Sbjct: 668 PDSFTHSVFL 677



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 41/87 (47%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++N +   L  T+  D     F  +   G+ P++++Y ILIN  C MG       +  
Sbjct: 600 VITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYR 659

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRI 176
            +L     PD+ T +  +K+L  + ++
Sbjct: 660 EMLDRKIQPDSFTHSVFLKNLHRDYQV 686



 Score = 45.1 bits (105), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VF+ ML+ +   P V ++ +L    A  +  D     F ++    +  +  TYN +IN  
Sbjct: 552 VFNEMLS-KGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGL 610

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C   R+   +     +      P+  ++T LI + C      EA  L+ ++     + D 
Sbjct: 611 CMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDS 670

Query: 196 FTYNTLINGLCR 207
           FT++  +  L R
Sbjct: 671 FTHSVFLKNLHR 682


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 142/310 (45%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G ++ GF +   +L
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M            PD ITY+T+I GL K+             S   L    F
Sbjct: 265 LAMEIYKQM------LSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKF 318

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 319 ------------TYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 366

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 367 RSVDAEK-------MLREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 419

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 420 PSVVTYNVLM 429



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 134/296 (45%), Gaps = 27/296 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    +    L   +  +G+ PD YTY++LI
Sbjct: 161 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLI 219

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++ +  C 
Sbjct: 220 NGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQM-LSQCL 278

Query: 193 L-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           L D+ TYNTLI GL + G    A +L +EM+          +PD  TY T+IDG CKE  
Sbjct: 279 LPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKG------LKPDKFTYXTLIDGCCKEG- 331

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                      +F    +M        ++   + +  LI GLC+  +   A ++ + +  
Sbjct: 332 -------DLDTAFEHRKRMI----QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 380

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            GL P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 381 VGLKPDDRTYTMIINEFCKKGDVWKGSK------LLKEMQRDGHVPSVVTYNVLMN 430



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAME 268

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L  C  PD +T+ +LI  L  +  + +A  L  ++ + G + D FTY TLI+G C
Sbjct: 269 IYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCC 328

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 329 KEGDLDTAFEHRKRMIQEN------IRLDDVAYTALISGLCQEGRSVD------------ 370

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G +P+VVTYN+L+ 
Sbjct: 371 AEKMLREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430

Query: 327 G 327
           G
Sbjct: 431 G 431



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 166

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G ++ GF +   +L S   PD  T++ LI
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLI 219


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 144/325 (44%), Gaps = 29/325 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  ++++ + G L      +    LF+ +   G+ PD Y Y  LI+ FCK G +      
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNW 279

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + R    P+ VT+T+LI       ++ +A  ++  +   GC  ++ TY  LI+GLC+
Sbjct: 280 FDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCK 339

Query: 208 TGHTIVALNLFEEMANGNGEF-----------GVVCEPDAITYSTIIDGLCKEAGSANFL 256
            G    A  +++ M   N E            G   EP+  TY  ++DGLCK        
Sbjct: 340 AGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCK-------- 391

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
            +    +   L  M+    +   +   + +  LIDG CK  KL  A+E+F ++   G  P
Sbjct: 392 AYQVKEARDLLKSMS----VEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDP 447

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           NV TY+ LI  L  D ++D          +  ++      P++  Y  +I+  CK+G+  
Sbjct: 448 NVYTYSSLIDRLFKDKRLD------LALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTD 501

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLI 401
             + +   +      P+ VT+T++I
Sbjct: 502 EAYKLMVMMEEKGCNPNVVTYTAMI 526



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 155/359 (43%), Gaps = 55/359 (15%)

Query: 87  RPPVTSFNILFGCLAKTKH-----YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           +P    +NIL G +  ++       D     +  +   G+  ++   +    C C +G+ 
Sbjct: 144 QPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKF 203

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
              + V+  ++   F PD  T++ +I  LC  S++ +A  LF +++  G   DV+ Y TL
Sbjct: 204 EKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTL 263

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVV-----------------------------C 232
           I+  C+ G    A N F+EM        VV                             C
Sbjct: 264 IDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGC 323

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN------- 285
            P+ +TY+ +IDGLCK AG            +  + K     P V +    ++       
Sbjct: 324 TPNIVTYTALIDGLCK-AGKIE----KASQIYKIMKKENVEIPDVDMHFRVVDGASNEPN 378

Query: 286 ---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
              +  L+DGLCK  ++K AR+L +S+   G  PN V Y+ LI G C  G++DE +    
Sbjct: 379 VFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQE--- 435

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              +F  +   G  P++YTY+ LI+   K  R+     +  ++L +   P+ V +T +I
Sbjct: 436 ---VFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMI 491



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 126/322 (39%), Gaps = 59/322 (18%)

Query: 116 LNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175
           ++  G   D +T     +  CK G+      +L +     F PD V +T +I  LC  S 
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLEK---EEFVPDTVLYTKMISGLCEASL 57

Query: 176 IMEAAALFTKLRVFGCELDVFTY-----------------------------------NT 200
             EA    T++R   C  +V TY                                   N+
Sbjct: 58  FEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNS 117

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           L++  CR+G    A  L ++M          C+P  + Y+ +I G+C        +    
Sbjct: 118 LVHAYCRSGDYAYAYKLLKKMVQCG------CQPGYVVYNILIGGICSSEEPGKDVLDLA 171

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNF-LCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
             ++  + +       V +     NF  C    LC I K + A  + + +   G +P+  
Sbjct: 172 EKAYGEMLEAGVVLNKVNIS----NFSRC----LCGIGKFEKAYNVIREMMSKGFIPDTS 223

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY+ +I  LCN  ++      E  F LF+ +   G+ PD+Y Y  LI+ FCK G +    
Sbjct: 224 TYSKVIGYLCNASKV------EKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQAR 277

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
             F  +      P+ VT+T+LI
Sbjct: 278 NWFDEMERDGCAPNVVTYTALI 299



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 124/335 (37%), Gaps = 84/335 (25%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           + P V ++  L   L K         L K +++ G  P+   Y+ LI+  CK G++    
Sbjct: 375 NEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQ 434

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            V   +L   + P+  T++SLI  L  + R+  A  + +K+    C  +V  Y  +I+GL
Sbjct: 435 EVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGL 494

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G T  A  L   M          C P+ +TY+ +IDG  K                 
Sbjct: 495 CKVGKTDEAYKLMVMMEEKG------CNPNVVTYTAMIDGFGKSG--------------- 533

Query: 266 ALNKMAFYFPLVRVQ-CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
                       RV+ CL                     EL Q +   G  PN VTY +L
Sbjct: 534 ------------RVEKCL---------------------ELLQQMSSKGCAPNFVTYRVL 560

Query: 325 IRGLCNDGQMDET-------------KH---YETVFLLFKR-----------LNSTGLFP 357
           I   C+ G +DE              +H   Y  V   F R           ++     P
Sbjct: 561 INHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNREFIASLYLSFEISENDSVP 620

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
               Y +LI+ F K GR+     +   +  S F+P
Sbjct: 621 VAPVYRVLIDNFIKAGRLEIALELNEEL--SSFSP 653



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 116/291 (39%), Gaps = 32/291 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  VF  ML      P V +++ L   L K K  D  L +  ++      P+   Y  
Sbjct: 431 DEAQEVFTTMLEC-GYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTE 489

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+  CK+G+    + ++  +      P+ VT+T++I       R+ +   L  ++   G
Sbjct: 490 MIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKG 549

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +  TY  LIN  C TG    A  L EEM        V        Y  +I+G  +E 
Sbjct: 550 CAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVA------GYRKVIEGFNREF 603

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLV-------RVQ-CLCLN----------------F 286
            ++ +L F  ++   ++     Y  L+       R++  L LN                 
Sbjct: 604 IASLYLSFE-ISENDSVPVAPVYRVLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIH 662

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           + LI+ L    K   A EL+  +   G +P +     LI+GL    + +E 
Sbjct: 663 ITLIENLSLAHKADKAFELYADMISRGSIPELSILVHLIKGLLRVNRWEEA 713



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 39/245 (15%)

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +   G  +D FT     + LC++G    AL+L E+      EF     PD + Y+ +I G
Sbjct: 1   MSTMGYRMDEFTLGCFAHSLCKSGKWREALSLLEK-----EEF----VPDTVLYTKMISG 51

Query: 246 LCKEAGSANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLN------------------- 285
           LC+ +     + F + M + S L  +  Y  L+   C CLN                   
Sbjct: 52  LCEASLFEEAMDFLTRMRASSCLPNVLTYRILL---CGCLNKEKLGRCKRILSMMITEGC 108

Query: 286 ------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                 F  L+   C+      A +L + + + G  P  V YNILI G+C+  +  +   
Sbjct: 109 YPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDV- 167

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
            +     +  +   G+  +    +    C C IG+    + +   ++   F PD  T++ 
Sbjct: 168 LDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSK 227

Query: 400 LIKIL 404
           +I  L
Sbjct: 228 VIGYL 232


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 141/306 (46%), Gaps = 37/306 (12%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  PD +TYNIL++  CK G +S    ++  + R    P+ +T+  L+  LC    + EA
Sbjct: 385 GFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEA 444

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             +  ++   G  ++   YN LI  LCR     VALNL  EM          C+PD  TY
Sbjct: 445 GLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKG------CKPDLFTY 498

Query: 240 STIIDGLCK----------------EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
           +++I GLCK                +   AN + ++ +   + L + AF   L  V  + 
Sbjct: 499 NSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIH-ALLRRGAFQKALTLVNDML 557

Query: 284 --------LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                   + +  LI   CK+  ++   EL++ +   GL  + ++ NI+I GLC  G++D
Sbjct: 558 FRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVD 617

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
                   F   +   + G  PD+ TYN ++N  CK+GR+     +F R+      PDA 
Sbjct: 618 ------NAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAF 671

Query: 396 TFTSLI 401
           T+ + I
Sbjct: 672 TYNTFI 677



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 145/335 (43%), Gaps = 29/335 (8%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R   P V ++ IL   L K    +    +   ++  GL  +   YN LI   C+  +
Sbjct: 416 MSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEK 475

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V     +L  +      PD  T+ SLI  LC   RI EA  LF  + + G   +  TYNT
Sbjct: 476 VHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNT 535

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+ L R G    AL L  +M          C  D ITY+ +I   CK       L    
Sbjct: 536 LIHALLRRGAFQKALTLVNDMLFRG------CTLDKITYNGLIKAFCKVGNIEKGLELYE 589

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                 L              +  N   +I+GLCK+ K+  A E  +     G +P++VT
Sbjct: 590 QMIMDGLG----------ADTISCNI--MINGLCKVGKVDNAFEFLRDAINRGFVPDIVT 637

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN ++ GLC  G++ E  +      LF RL   G+ PD +TYN  I+  CK G V+    
Sbjct: 638 YNSVLNGLCKVGRIKEALN------LFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACS 691

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL-----EINSFF 410
            F R + + F P  +T+  L+  L     + N+FF
Sbjct: 692 FFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNFF 726



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 149/369 (40%), Gaps = 51/369 (13%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           +T   P  A  VF  ML+ +   P V +F I+   L      D+  SL + +   G  P+
Sbjct: 194 VTGNCPQVATNVFYDMLS-KGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPN 252

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
              Y  LI+   +  +VS    +L  +      PD  TF  +I  LC  ++I +A  L  
Sbjct: 253 SIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVD 312

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           ++ + G   D  TY  L++GLCR G    A  +            + C  +AI  +T+I+
Sbjct: 313 RMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKIL---------IKIPCPNNAI-LNTLIN 362

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           G                 + S LN+    F     Q     +  L+ GLCK   L  AR+
Sbjct: 363 GYVMSG--------QLKEAQSFLNETMINFGF---QPDIFTYNILMHGLCKEGSLSFARD 411

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET--------------------------- 337
           L   + R G  PNV+TY IL+ GLC  G ++E                            
Sbjct: 412 LVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALC 471

Query: 338 --KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
             +       L   + + G  PDL+TYN LI   CK+ R+   F +F  +L      + V
Sbjct: 472 RKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNV 531

Query: 396 TFTSLIKIL 404
           T+ +LI  L
Sbjct: 532 TYNTLIHAL 540


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 141/306 (46%), Gaps = 37/306 (12%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  PD +TYNIL++  CK G +S    ++  + R    P+ +T+  L+  LC    + EA
Sbjct: 385 GFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLEEA 444

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             +  ++   G  ++   YN LI  LCR     VALNL  EM          C+PD  TY
Sbjct: 445 GLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKG------CKPDLFTY 498

Query: 240 STIIDGLCK----------------EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
           +++I GLCK                +   AN + ++ +   + L + AF   L  V  + 
Sbjct: 499 NSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIH-ALLRRGAFQKALTLVNDML 557

Query: 284 --------LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                   + +  LI   CK+  ++   EL++ +   GL  + ++ NI+I GLC  G++D
Sbjct: 558 FRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVD 617

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
                   F   +   + G  PD+ TYN ++N  CK+GR+     +F R+      PDA 
Sbjct: 618 ------NAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAF 671

Query: 396 TFTSLI 401
           T+ + I
Sbjct: 672 TYNTFI 677



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 146/335 (43%), Gaps = 29/335 (8%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++ R   P V ++ IL   L K    +    +   ++  GL  +   YN LI   C+  +
Sbjct: 416 MSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEK 475

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V     +L  +      PD  T+ SLI  LC   RI EA  LF  + + G   +  TYNT
Sbjct: 476 VHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNT 535

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+ L R G    AL L  +M          C  D ITY+ +I   CK       L    
Sbjct: 536 LIHALLRRGAFQKALTLVNDMLFRG------CTLDKITYNGLIKAFCKVGNIEKGLELYE 589

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                 L              +  N   +I+GLCK+ K+  A E  +     G +P++VT
Sbjct: 590 QMIMDGLG----------ADTISCNI--MINGLCKVGKVDNAFEFLRDAINRGFVPDIVT 637

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN ++ GLC  G++ E  +      LF RL   G+ PD +TYN  I+  CK G V+   +
Sbjct: 638 YNSVLNGLCKVGRIKEALN------LFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDACL 691

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL-----EINSFF 410
            F R + + F P  +T+  L+  L     + N+FF
Sbjct: 692 FFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNFF 726



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 149/369 (40%), Gaps = 51/369 (13%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           +T   P  A  VF  ML+ +   P V +F I+   L      D+  SL + +   G  P+
Sbjct: 194 VTGNCPQVATNVFYDMLS-KGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPN 252

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
              Y  LI+   +  +VS    +L  +      PD  TF  +I  LC  ++I +A  L  
Sbjct: 253 SIVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVD 312

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           ++ + G   D  TY  L++GLCR G    A  +            + C  +AI  +T+I+
Sbjct: 313 RMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKIL---------IKIPCPNNAI-LNTLIN 362

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           G                 + S LN+    F     Q     +  L+ GLCK   L  AR+
Sbjct: 363 GYVMSG--------QLKEAQSFLNETMINFGF---QPDIFTYNILMHGLCKEGSLSFARD 411

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET--------------------------- 337
           L   + R G  PNV+TY IL+ GLC  G ++E                            
Sbjct: 412 LVNEMSRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALC 471

Query: 338 --KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
             +       L   + + G  PDL+TYN LI   CK+ R+   F +F  +L      + V
Sbjct: 472 RKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNV 531

Query: 396 TFTSLIKIL 404
           T+ +LI  L
Sbjct: 532 TYNTLIHAL 540


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 154/333 (46%), Gaps = 35/333 (10%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL    AK +  D  ++ F  +   G  P+  TY  +I+  CK GRV        +++
Sbjct: 298 FNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMV 357

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
               +PD +TFTSLI  LC      +   L  ++   G   +    NT+++ LC+ G  +
Sbjct: 358 SEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVL 417

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC---KEAGSANFLGFSCM-------A 262
            A + F+++ +      V  +PD ++Y+ +IDG C   K   S   LG            
Sbjct: 418 EAHDFFDQIIH------VGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNV 471

Query: 263 SFSAL-----------NKMAFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
           ++SAL           + +A Y  +    V+   + +  ++ GL    ++  ARE +  +
Sbjct: 472 TYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKI 531

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             +G+   + TYNI++ GLC +  +DE         +F+ L S     ++ T+NI+I   
Sbjct: 532 VDSGIQLGINTYNIVLGGLCENSFVDEA------LRMFQGLRSKEFQLEVRTFNIMIVGL 585

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            K+GR+     +F  ILPS   PDA+ +  +I+
Sbjct: 586 LKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQ 618



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 162/385 (42%), Gaps = 74/385 (19%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM--------- 138
           P V S+N++   L K    D   +LF  +   G  P+  TYN +I+  CK          
Sbjct: 137 PNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAV 196

Query: 139 -------GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
                  G++     +L ++      PD VT++ LI   C   R  EA  +F  +   G 
Sbjct: 197 LQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQ 256

Query: 192 ELDVFTYNTLINGLCRTG-----HTIVALNLFEEMANGNGEFGVVCE------------- 233
             D +TY TL++G    G     H ++AL + + +   +  F ++               
Sbjct: 257 NPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMT 316

Query: 234 -----------PDAITYSTIIDGLCK----------------EAGSANFLGFSCM----- 261
                      P+ +TY+T+ID LCK                E  S + + F+ +     
Sbjct: 317 AFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLC 376

Query: 262 --ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
               +  + K++F      +    +    ++D LCK  ++  A + F  +   G+ P+VV
Sbjct: 377 TIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVV 436

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           +Y ILI G C DG+MDE+        L  R+ S GL PD  TY+ L+N +CK GRV    
Sbjct: 437 SYTILIDGYCLDGKMDES------IKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDAL 490

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            ++  +      P+A+T+  ++  L
Sbjct: 491 ALYREMFSKDVKPNAITYNIILHGL 515



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 147/334 (44%), Gaps = 25/334 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+N R   P     N +   L K          F ++   G+ PD  +Y ILI+ +C  G
Sbjct: 391 MIN-RGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDG 449

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++     +LGR++     PD VT+++L+   C   R+ +A AL+ ++     + +  TYN
Sbjct: 450 KMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYN 509

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            +++GL   G  + A   + ++ +   + G+       TY+ ++ GLC+     N     
Sbjct: 510 IILHGLFHAGRVVAAREFYMKIVDSGIQLGIN------TYNIVLGGLCE-----NSFVDE 558

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            +  F  L    F       Q     F  +I GL K+ ++  A+ LF ++  +GL+P+ +
Sbjct: 559 ALRMFQGLRSKEF-------QLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAI 611

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
            Y ++I+    +G ++E+        LF  +   G   +  T N ++    + G V    
Sbjct: 612 IYGLMIQSHIEEGLLEESDE------LFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRAG 665

Query: 380 VIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
               +I    ++ +A T   LI I+    + ++V
Sbjct: 666 TYLTKIDEKEYSVEASTAVLLISIVSERKYQKEV 699



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 158/404 (39%), Gaps = 89/404 (22%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFN-----ILFGCLAK 102
            LE+ + E+ +S       S+   +AL +FD +L  R     V +FN     +  G  + 
Sbjct: 14  QLERIIVEQHRSG------SLGLEDALNLFDELLP-RARSASVHAFNRVLTVVAHGDSSS 66

Query: 103 TKHYDTVL--SLFKRLNLTG---LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 157
           ++ +   L  SLF  +   G   L  D  T+ ILI CFC +G +                
Sbjct: 67  SQRHGAALAVSLFNTMAQVGVNKLATDACTFGILIRCFCNVGLLDFA------------- 113

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
                       L  ESR   AA        + C  +V +YN +INGL + G    A  L
Sbjct: 114 ------------LEEESRGSRAAVHMMADDGYNCPPNVLSYNMVINGLFKEGEVDKAYTL 161

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG--------SANFLGFSCMASFSALNK 269
           F EM       G    P+ +TY+++IDGLCK              F       +   L K
Sbjct: 162 FHEM------LGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKK 215

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           M+       +Q   + +  LID  CKI +   AR +F S+ R G  P+  TY  L+ G  
Sbjct: 216 MSGG----GLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYA 271

Query: 330 NDGQM------------DETKHYETVFLLFKR-----------------LNSTGLFPDLY 360
             G +            D     + VF +  R                 +   G  P++ 
Sbjct: 272 TKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVV 331

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           TY  +I+  CK GRV      F +++    +PD +TFTSLI  L
Sbjct: 332 TYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGL 375


>gi|125563733|gb|EAZ09113.1| hypothetical protein OsI_31378 [Oryza sativa Indica Group]
          Length = 618

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 166/356 (46%), Gaps = 39/356 (10%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P+EAL VF  +  +    P + + N +   L K      V  LF  +   G+ P   TYN
Sbjct: 122 PDEALSVFGRLREL----PALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYN 177

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LIN     G V+  + V  +++     P+ VT+T++I  LC E  I +A  LF +++  
Sbjct: 178 TLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMIYALCEEDCIGDAEGLFLEMKEA 237

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK- 248
           G   +++TYN L++   +  +   AL  + ++     + G+V  P+ + ++T+IDGLCK 
Sbjct: 238 GMRPNLYTYNALMSSHFKRDNIKHALVFYYDLL----KCGLV--PNDVIFTTLIDGLCKA 291

Query: 249 ----EAGSA----------------NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
               EA +                 N L      S  A   +AF+  ++R +     F C
Sbjct: 292 NRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKELRPDEFTC 351

Query: 289 --LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             ++ GLC   ++++A    + + ++G+  N   YN+LI   C  G +DE        + 
Sbjct: 352 SIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEA------LVT 405

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             R++  G+ P++ TY+ LI+   K G +     I+  ++     P+ VT+T+LI 
Sbjct: 406 CTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIH 461



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 147/341 (43%), Gaps = 43/341 (12%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +GD+      +A  V+D M+  R   P V ++  +   L +         LF  +   G+
Sbjct: 186 QGDVA-----KAWEVWDQMVARRID-PNVVTYTTMIYALCEEDCIGDAEGLFLEMKEAGM 239

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+ YTYN L++   K   + H  V    +L+    P+ V FT+LI  LC  +RI EA  
Sbjct: 240 RPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCKANRITEAKN 299

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +F  +  +     V  YN+LI+G  R+G+   AL  F+E+            PD  T S 
Sbjct: 300 IFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKE------LRPDEFTCSI 353

Query: 242 IIDGLCKEAG---SANFLGFSCMASFSALNKMAFYFPL---------------------V 277
           ++ GLC       +  FL     +   ALN  A+   +                     V
Sbjct: 354 VVRGLCDGGQMQVATRFLEVMQQSGI-ALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEV 412

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            V+   + +  LIDG  K  +++IA  ++  +   G+ PNVVTY  LI G   +G MD  
Sbjct: 413 GVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMD-- 470

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
                 F L K +   G++ +  T ++L++  C+  RV   
Sbjct: 471 ----AAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDA 507



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 136/312 (43%), Gaps = 32/312 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  +N L     ++ +    L+ F+ +    L PD +T +I++   C  G++      
Sbjct: 311 PTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKELRPDEFTCSIVVRGLCDGGQMQVATRF 370

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  + +S    +A  +  LI + C    + EA    T++   G E +V TY++LI+G  +
Sbjct: 371 LEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSK 430

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            G   +A+ ++ EM A G        EP+ +TY+ +I G  K                  
Sbjct: 431 NGEMEIAMAIYTEMVAKG-------VEPNVVTYTALIHGHAKNGDMDAAFWLQ-----KE 478

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF------QSLPRAGLMPNVVT 320
           + +   Y   + V  L       +DGLC+ ++++ A          +   +   + N VT
Sbjct: 479 MEEKGIYSNAITVSVL-------VDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVT 531

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y  LI GL  DGQ +E  H+      F  +  +G+ PD +TY ++I   C +G V +  +
Sbjct: 532 YMTLIYGLYIDGQYNEACHF------FSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAMM 585

Query: 381 IFGRILPSCFTP 392
           ++  ++     P
Sbjct: 586 LYADMVKVGVKP 597



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 13/268 (4%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
            G   S    EAL  F  ++  +  RP   + +I+   L             + +  +G+
Sbjct: 321 HGAFRSGYAQEALAFFQEIIR-KELRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGI 379

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
             +   YN+LI+ +CK G +    V   R+      P+ VT++SLI        +  A A
Sbjct: 380 ALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMA 439

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           ++T++   G E +V TY  LI+G  + G    A  L +EM     E G+    +AIT S 
Sbjct: 440 IYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEME----EKGIYS--NAITVSV 493

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           ++DGLC+E    + + F  +  +S   K      +       + ++ LI GL    +   
Sbjct: 494 LVDGLCRENRVQDAVRF--IMEYSGQKKSEKNPSIAN----SVTYMTLIYGLYIDGQYNE 547

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLC 329
           A   F  +  +G++P+  TY ++IRGLC
Sbjct: 548 ACHFFSCMRDSGMVPDRFTYTLVIRGLC 575



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
           +S++ +  E      R   +P +   N ++ GL     +        V+ LF  +   G+
Sbjct: 116 LSQMALPDEALSVFGRLRELPALPACNAILDGLVKAHML------ARVWELFDEMLGRGM 169

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            P + TYN LIN     G V+  + ++ +++     P+ VT+T++I  L
Sbjct: 170 VPSVVTYNTLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMIYAL 218


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 137/311 (44%), Gaps = 24/311 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +++ L   L K       L +F  +   G  PD   YN+LI+C  K G+V     +L 
Sbjct: 117 VFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLE 176

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            + R    PD  T+  +I  L +  R  +A + F  ++      DV TYNTL+NGL +  
Sbjct: 177 DMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLR 236

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
            T  A +LF+EM          C PD  T+ T+ID L K     + L  S     + L K
Sbjct: 237 RTDEACDLFDEMQANK------CMPDLTTFGTLIDTLAKAGRMEDALEQS-----ARLVK 285

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           M  + P   +      +  LI G C+  ++    ELFQ +      P+ +TY IL+ G  
Sbjct: 286 MG-HVPNSYI------YNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFS 338

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
             G      H      L + +   G  P L TYN+LI      G+V   + +F  ++   
Sbjct: 339 RRG------HTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKG 392

Query: 390 FTPDAVTFTSL 400
           F PD  T+++L
Sbjct: 393 FNPDMQTYSAL 403



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 129/284 (45%), Gaps = 32/284 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    +N+L  CL K    D  L L + +N  G+ PD  TYNI+I+     GR    +  
Sbjct: 150 PDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSF 209

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            G + R   +PD VT+ +L+  L    R  EA  LF +++   C  D+ T+ TLI+ L +
Sbjct: 210 FGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAK 269

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    AL     +     + G V  P++  Y+ +I G C+ +G  +         +   
Sbjct: 270 AGRMEDALEQSARLV----KMGHV--PNSYIYNALISGFCR-SGQVD-------KGYELF 315

Query: 268 NKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
             M        ++C C    + +  L+ G  +     +A EL Q + R G  P + TYN+
Sbjct: 316 QDM--------IECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNV 367

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           LIR L   GQ+      E  + LFK + + G  PD+ TY+ L N
Sbjct: 368 LIRSLSMAGQV------EDAYTLFKEMIAKGFNPDMQTYSALPN 405



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 161/346 (46%), Gaps = 34/346 (9%)

Query: 57  CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL 116
           CK+ G+GD        AL +F  +      +P   SF+ L   L K       L++F+ +
Sbjct: 22  CKA-GDGD-------RALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEM 73

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
              GL  D    N LI+C C++G +     +L  +    F  D  T++ L+  L    R 
Sbjct: 74  LGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAGRA 133

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
            +A  +F+ ++  GC  D   YN LI+ L + G    AL L E+M       G++  PD 
Sbjct: 134 AKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDM----NRKGIM--PDC 187

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
            TY+ +ID L      ++   +    SF  + K   + P V      + +  L++GL K+
Sbjct: 188 RTYNIVIDVL------SSCGRYEKAYSFFGMMKRRKHSPDV------VTYNTLLNGLKKL 235

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            +   A +LF  +     MP++ T+  LI  L   G+M++            RL   G  
Sbjct: 236 RRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSA------RLVKMGHV 289

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILP-SCFTPDAVTFTSLI 401
           P+ Y YN LI+ FC+ G+V  G+ +F  ++  SCF PD++T+T L+
Sbjct: 290 PNSYIYNALISGFCRSGQVDKGYELFQDMIECSCF-PDSITYTILV 334



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 127/284 (44%), Gaps = 27/284 (9%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILR--SCFTPDAVTFTSLIKDLCAESRIMEAA 180
           PD   YN LI  +CK G       +  R+ +  SC  P+AV+F +L+  LC  SR  +A 
Sbjct: 9   PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSC-KPNAVSFDTLVIFLCKMSRATDAL 67

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
           A+F ++   G + DV   NTLI+  CR G    A  L   M             D  TYS
Sbjct: 68  AVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVL------DVFTYS 121

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
            ++D L K   +A  L       FS + K A   P   V      +  LI  L K  K+ 
Sbjct: 122 YLMDALGKAGRAAKALEV-----FSNMQK-AGCMPDTVV------YNVLISCLGKQGKVD 169

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A EL + + R G+MP+  TYNI+I  L + G+      YE  +  F  +      PD+ 
Sbjct: 170 EALELLEDMNRKGIMPDCRTYNIVIDVLSSCGR------YEKAYSFFGMMKRRKHSPDVV 223

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           TYN L+N   K+ R      +F  +  +   PD  TF +LI  L
Sbjct: 224 TYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTL 267



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 105/238 (44%), Gaps = 34/238 (14%)

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  DV  YNTLI G C+ G    AL++F  +          C+P+A+++ T++  LCK +
Sbjct: 7   CAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGS-----CKPNAVSFDTLVIFLCKMS 61

Query: 251 GSANFLG--------------------FSCMASFSALNKMAFYFPLVRVQCLCLN---FL 287
            + + L                       C      L +       +      L+   + 
Sbjct: 62  RATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYS 121

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            L+D L K  +   A E+F ++ +AG MP+ V YN+LI  L   G++DE         L 
Sbjct: 122 YLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDE------ALELL 175

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
           + +N  G+ PD  TYNI+I+     GR    +  FG +     +PD VT+ +L+  L+
Sbjct: 176 EDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLK 233



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  R   P V ++N L   L K +  D    LF  +      PD  T+  LI+   K G
Sbjct: 212 MMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAG 271

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           R+        R+++    P++  + +LI   C   ++ +   LF  +    C  D  TY 
Sbjct: 272 RMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYT 331

Query: 200 TLINGLCRTGHTIVALNLFEEM 221
            L+ G  R GHT +A+ L +EM
Sbjct: 332 ILVLGFSRRGHTSMAMELLQEM 353


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 160/353 (45%), Gaps = 43/353 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++ IL    +     D  + L + +   G   +   +  L+   C  GRV      
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + + C  PD +T+T+L+  LC   +  EA  +  ++   GC  D  T++TLI+GLC+
Sbjct: 67  FRAMAKDC-APDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCK 125

Query: 208 TGHTIVALNLFEE-MANGNGEFGVVCEPDAITYSTIIDGLCKEAGS----ANFLGFSCMA 262
            G    A  + E+ +  G G        DA  + TII  LC +  S    +  LG     
Sbjct: 126 FGSEEQAFRVLEDVIQRGMG------NSDA-AFETIIQRLCNKYNSVELASKVLGVVIAK 178

Query: 263 SFSALNKM----------------AFYFPLVRVQCLCL----NFLCLIDGLCKISKLKIA 302
            F+    M                A+    V ++  C+     F  LI GLCK +++  A
Sbjct: 179 GFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEA 238

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
           ++L + +   G  PNVVTY+ +I GLC  GQ+D+   YE +F L +R N     P++ T+
Sbjct: 239 QQLLEKMVTGGCSPNVVTYSTVINGLCKQGQVDDA--YE-LFQLMERRNCP---PNVVTH 292

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----KILEINSFFR 411
           NILI+  CK  R+     ++ R+  +   PD +T+ SLI    K  +++  F+
Sbjct: 293 NILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQ 345



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 135/315 (42%), Gaps = 60/315 (19%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  FN++     K K  D+   L + +   G  P+ +T+ ILI   CK  RV     +
Sbjct: 182 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQL 241

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L +++    +P+ VT++++I  LC + ++ +A  LF  +    C  +V T+N LI+GLC+
Sbjct: 242 LEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCK 301

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A  L+  M     E G  C PD ITY+++IDGLCK              SF   
Sbjct: 302 AKRIEEARQLYHRMR----ETG--CAPDIITYNSLIDGLCK--------------SF--- 338

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL-MPNVVTYNILIR 326
                                         ++  A +LFQ++P +G+   N VTY+ L  
Sbjct: 339 ------------------------------QVDEAFQLFQTIPESGVSAANAVTYSTLFH 368

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G    G+M +         +F  L   G  PDL TY  LI  +CK  R      +   + 
Sbjct: 369 GYAALGRMADACR------IFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMA 422

Query: 387 PSCFTPDAVTFTSLI 401
              F P   T ++++
Sbjct: 423 SKGFPPRVNTLSAVL 437



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 147/358 (41%), Gaps = 57/358 (15%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++  R   P V + NIL   L K K  +    L+ R+  TG  PD  TYN LI+  CK  
Sbjct: 279 LMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSF 338

Query: 140 RVS--------------------------HGFVVLGRILRSC----------FTPDAVTF 163
           +V                           HG+  LGR+  +C          F+PD  T+
Sbjct: 339 QVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATY 398

Query: 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           TSLI + C  SR +E   L  ++   G    V T + ++ GL    HT  A+ LF+ MA 
Sbjct: 399 TSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAA 458

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
                   C  DA+ Y+ +++G+ +   S +    + +          F      V    
Sbjct: 459 RG------CTDDALIYNLVVEGMAR--ASKHNKALAVLEQVIDKRDRKFNPSSSAVD--- 507

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
                L++ LC++ +   A++L   +   G    V +YN L+ GL    + DE       
Sbjct: 508 ----ALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQ---- 559

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +F+ + S G  P++ T N++I+  C   +V   + +  R+      PD  T  +LI
Sbjct: 560 --VFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLI 615



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 101/241 (41%), Gaps = 49/241 (20%)

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  + FTY  LI G    G   +A+ L EEM + NG      E +A+ ++T++ GLC +A
Sbjct: 5   CMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKS-NG-----FEGNAVVHTTLMKGLC-DA 57

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G         +  F A+ K     P V      + +  L+  LCK  K   A+ + + + 
Sbjct: 58  GRV----VEALEHFRAMAKDC--APDV------MTYTALVHALCKAGKFDEAQGMLREMI 105

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDET---------------------------KHYETV 343
             G  P+ VT++ LI GLC  G  ++                              Y +V
Sbjct: 106 ARGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSV 165

Query: 344 FLLFKRLN---STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
            L  K L    + G  P +  +N++IN FCK   + S + +   ++     P+  TFT L
Sbjct: 166 ELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTIL 225

Query: 401 I 401
           I
Sbjct: 226 I 226



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT 119
           EG   +   N+AL V + +++ R  +  P  ++ + L   L +    D    L  +++  
Sbjct: 473 EGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSER 532

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G      +YN L++   ++ R      V   ++ +   P+  T   +I  LC+ +++ +A
Sbjct: 533 GFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDA 592

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L  ++   GC  D+ T NTLI G C++G   +A  L EEM     E G+  EP+  T+
Sbjct: 593 YELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMT----EAGL--EPNDTTH 646

Query: 240 S 240
            
Sbjct: 647 D 647


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 155/347 (44%), Gaps = 39/347 (11%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ML+  P+   V    ++ G +   +  +    L+K + + G  PD +T+NI+I+  CK G
Sbjct: 327 MLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKG 386

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            +      L  +++  F P+ +T+T LI   C +    EA+ +   +   G  L+   YN
Sbjct: 387 YLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYN 446

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF- 258
            LI  LC+ G    AL ++ EM++        C+PD  T++++I GLCK       LG  
Sbjct: 447 CLIGALCKDGKIQDALQMYGEMSSKG------CKPDIYTFNSLIYGLCKNDKMEEALGLY 500

Query: 259 ------SCMASFSALNKMAFYFPLVRVQCLC------------------LNFLCLIDGLC 294
                   +A+    N +   F  +R++ +                   + +  LI  LC
Sbjct: 501 RDMLLEGVIANTVTYNTLIHAF--LRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALC 558

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K    +    L + +    + P++ + NILI   C  G++++   +       + +   G
Sbjct: 559 KTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQF------LRDMIQRG 612

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L PD+ TYN LIN  CK+GR      +F  +      PDAVT+ +LI
Sbjct: 613 LTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLI 659



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 143/341 (41%), Gaps = 36/341 (10%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           G+   + PN    VF  ML+ R   P V +F ++          D+  SL + +   G  
Sbjct: 178 GNCPKVAPN----VFYDMLS-RGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCV 232

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+   Y +LI+   +  RV+    +L  +      PD  TF  +I  LC   RI EAA L
Sbjct: 233 PNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKL 292

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             ++ +     D      L++GLCR G    A  +  ++ N          P+ + Y+T+
Sbjct: 293 HDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPN----------PNTVLYNTL 342

Query: 243 IDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           I+G         A  L +  M   +     AF F +            +IDGLCK   L 
Sbjct: 343 INGYVVSGRFEEAKDLLYKNMV-IAGFEPDAFTFNI------------MIDGLCKKGYLV 389

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A E    + + G  PNV+TY ILI G C  G      H+E    +   +++ GL  +  
Sbjct: 390 SALEFLDEMVKKGFEPNVITYTILIDGFCKQG------HFEEASKVVNSMSAKGLSLNTV 443

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            YN LI   CK G++     ++G +      PD  TF SLI
Sbjct: 444 GYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLI 484



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 147/330 (44%), Gaps = 27/330 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL   D M+  +   P V ++ IL     K  H++    +   ++  GL  +   YN LI
Sbjct: 391 ALEFLDEMVK-KGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLI 449

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              CK G++     + G +      PD  TF SLI  LC   ++ EA  L+  + + G  
Sbjct: 450 GALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVI 509

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-CEPDAITYSTIIDGLCKEAG 251
            +  TYNTLI       H  + L L ++     GE     C  D ITY+ +I  LCK   
Sbjct: 510 ANTVTYNTLI-------HAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGA 562

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
           +   LG         +      FP +    +      LI+  C+  K+  A +  + + +
Sbjct: 563 TEKCLGLIEQMFGEEI------FPSINSCNI------LINSFCRTGKVNDALQFLRDMIQ 610

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL P++VTYN LI GLC  G+  E  +      LF  L + G+ PD  TYN LI+ +C 
Sbjct: 611 RGLTPDIVTYNSLINGLCKMGRFQEALN------LFNGLQAKGIHPDAVTYNTLISRYCY 664

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G  +    +  + + + F P+ +T++ LI
Sbjct: 665 EGLFNDACQLLFKGVSNGFIPNEITWSILI 694



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++N L   L KT   +  L L +++    +FP   + NILIN FC+ G+V+     L  +
Sbjct: 549 TYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDM 608

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           ++   TPD VT+ SLI  LC   R  EA  LF  L+  G   D  TYNTLI+  C  G  
Sbjct: 609 IQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLF 668

Query: 212 IVALN-LFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
             A   LF+ ++NG         P+ IT+S +I+   K
Sbjct: 669 NDACQLLFKGVSNG-------FIPNEITWSILINYFVK 699



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 52/116 (44%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S NIL     +T   +  L   + +   GL PD  TYN LIN  CKMGR      +
Sbjct: 580 PSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNL 639

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +      PDAVT+ +LI   C E    +A  L  K    G   +  T++ LIN
Sbjct: 640 FNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILIN 695


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 146/318 (45%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R    S N +   L K      V S++K +    +  +  T++++IN  CK+G+      
Sbjct: 191 RLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGD 250

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V+  +    F+P  +T+ ++I   C   ++ +A AL  ++       +  T+N LI+G C
Sbjct: 251 VVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFC 310

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R  +   A  +FEEM           +P+ +TY+++I+GLC        LG     S   
Sbjct: 311 RDENVTAAKKVFEEMQRQG------LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMG 364

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L       P V      + +  LI+G CK   LK ARE+   + + GL PNV+T+N LI 
Sbjct: 365 LK------PNV------VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLID 412

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
                G+MD+       FLL   +  TG+ P++ TYN LI  FC+ G V     +   + 
Sbjct: 413 AYGKAGRMDD------AFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEME 466

Query: 387 PSCFTPDAVTFTSLIKIL 404
            +    D VT+  L+  L
Sbjct: 467 GNGLKADLVTYNILVDAL 484



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 144/315 (45%), Gaps = 25/315 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +     K        +L K +    + P+  T+NILI+ FC+   V+    V
Sbjct: 262 PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKV 321

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + R    P+ VT+ SLI  LC+  ++ EA  L  K+   G + +V TYN LING C+
Sbjct: 322 FEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCK 381

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN--FLGFSCMASFS 265
                  L    EM +  G+ G+   P+ IT++T+ID   K AG  +  FL  S M    
Sbjct: 382 KK----MLKEAREMLDDIGKRGLA--PNVITFNTLIDAYGK-AGRMDDAFLLRSMMLDTG 434

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
               ++ Y              CLI G C+   +K AR+L + +   GL  ++VTYNIL+
Sbjct: 435 VCPNVSTYN-------------CLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILV 481

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
             LC  G   ET+    +      +   G   ++ TYN+LI  FC  G++     +   +
Sbjct: 482 DALCKKG---ETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEM 538

Query: 386 LPSCFTPDAVTFTSL 400
           L     P+  T+  L
Sbjct: 539 LEKGLIPNRTTYDIL 553



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 133/308 (43%), Gaps = 24/308 (7%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           ++L     K    D  L  F R    G      + N ++    K GR+     V   ++R
Sbjct: 163 DMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIR 222

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
                + VTF  +I  LC   +  +A  +   ++ +G    V TYNT+I+G C+ G    
Sbjct: 223 RRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFK 282

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
           A  L +EM            P+ IT++ +IDG C++             + +A  K+   
Sbjct: 283 ADALLKEMV------AKRIHPNEITFNILIDGFCRD------------ENVTAAKKVFEE 324

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
                +Q   + +  LI+GLC   KL  A  L   +   GL PNVVTYN LI G C    
Sbjct: 325 MQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKM 384

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           + E +       +   +   GL P++ T+N LI+ + K GR+   F++   +L +   P+
Sbjct: 385 LKEARE------MLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPN 438

Query: 394 AVTFTSLI 401
             T+  LI
Sbjct: 439 VSTYNCLI 446



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 110/238 (46%), Gaps = 15/238 (6%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++N L   L      D  L L  +++  GL P+  TYN LIN FCK   +     
Sbjct: 331 QPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEARE 390

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  I +    P+ +TF +LI       R+ +A  L + +   G   +V TYN LI G C
Sbjct: 391 MLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFC 450

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G+   A  L +EM  GNG      + D +TY+ ++D LCK+             +   
Sbjct: 451 REGNVKEARKLAKEME-GNG-----LKADLVTYNILVDALCKKG--------ETRKAVRL 496

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           L++M       R +   + +  LI G C   KL+ A  L   +   GL+PN  TY+IL
Sbjct: 497 LDEMTLMEKKGR-RANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 553



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 8/182 (4%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL + D M  M   +P V ++N L     K K       +   +   GL P+  T+N 
Sbjct: 351 DEALGLQDKMSGM-GLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNT 409

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ + K GR+   F++   +L +   P+  T+  LI   C E  + EA  L  ++   G
Sbjct: 410 LIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNG 469

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMA--NGNGEFGVVCEPDAITYSTIIDGLCK 248
            + D+ TYN L++ LC+ G T  A+ L +EM      G        + +TY+ +I G C 
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGR-----RANIVTYNVLIKGFCN 524

Query: 249 EA 250
           + 
Sbjct: 525 KG 526



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V+++N L     +  +      L K +   GL  D  TYNIL++  CK G       +
Sbjct: 437 PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRL 496

Query: 148 LGRIL---RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           L  +    +     + VT+  LIK  C + ++ EA  L  ++   G   +  TY+ L + 
Sbjct: 497 LDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDE 556

Query: 205 LCRTG 209
           +   G
Sbjct: 557 MMEKG 561


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 158/358 (44%), Gaps = 50/358 (13%)

Query: 71  NEALCVFDYML--NMRPSRPPVTSF-NILFGCLAKT---KHYDTVLSLFKRLNLTGLFPD 124
           +EA  +++ ML  N  P+    TS     F C  K    K Y+ +L L       G  PD
Sbjct: 496 DEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRL-------GCSPD 548

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
               N  ++C  K G +  G  +   I    F PDA ++T LI  L       EA  LF 
Sbjct: 549 LLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFY 608

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
            ++  GC LD   YNT+I+G C++G    A  L EEM           EP  +TY ++ID
Sbjct: 609 TMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH------EPTVVTYGSVID 662

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKI 301
           GL K                  L++    F   + + + LN   +  LIDG  K+ ++  
Sbjct: 663 GLAK---------------IDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDE 707

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  + + L + GL PNV T+N L+  L    ++ E        + F+ +      P+  T
Sbjct: 708 AYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEA------LVCFQSMKDLKCTPNYIT 761

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQ 412
           Y+ILI+  CKI + +  FV +  +    F P+  T+T++I        I+E ++ F +
Sbjct: 762 YSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEK 819



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 144/318 (45%), Gaps = 33/318 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+N +  CL +    D  L  F+ +    + P+  TYNI+I+  CK G++    VV
Sbjct: 373 PSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVV 431

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +  +   P+ +T   ++  LC   R+ +A ++F  L    C  D  TY +LI GL R
Sbjct: 432 RDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGR 491

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  L+E+M + N        P+A+ Y+++I          NF  F C       
Sbjct: 492 HGRVDEAYKLYEQMLDANQ------IPNAVVYTSLI---------RNF--FKCGRKEDG- 533

Query: 268 NKMAFYFPLVRVQC----LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
                Y  ++R+ C    L LN    +D + K  +++  R LFQ +   G +P+  +Y I
Sbjct: 534 --HKIYNEMLRLGCSPDLLLLN--TYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTI 589

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GL   G   E   YE    LF  +   G   D   YN +I+ FCK G+V+  + +  
Sbjct: 590 LIHGLVKAGFAHEA--YE----LFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLE 643

Query: 384 RILPSCFTPDAVTFTSLI 401
            +      P  VT+ S+I
Sbjct: 644 EMKTKGHEPTVVTYGSVI 661



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 155/346 (44%), Gaps = 33/346 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +F+  L+ +  RP   ++  L   L +    D    L++++      P+   Y  
Sbjct: 461 DDACSIFE-GLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTS 519

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  F K GR   G  +   +LR   +PD +   + +  +     I +  ALF +++  G
Sbjct: 520 LIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLG 579

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  +Y  LI+GL + G    A  LF  M          C  D   Y+T+IDG CK +
Sbjct: 580 FIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQG------CVLDTRAYNTVIDGFCK-S 632

Query: 251 GSANFLGFSCMASFSALNKMAF--YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           G  N        ++  L +M    + P V      + +  +IDGL KI +L  A  LF+ 
Sbjct: 633 GKVN-------KAYQLLEEMKTKGHEPTV------VTYGSVIDGLAKIDRLDEAYMLFEE 679

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
               G+  NVV Y+ LI G    G++DE       +L+ + L   GL P++YT+N L++ 
Sbjct: 680 AKSKGIELNVVIYSSLIDGFGKVGRIDEA------YLIMEELMQKGLTPNVYTWNCLLDA 733

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----KILEINSFF 410
             K   +S   V F  +     TP+ +T++ LI    KI + N  F
Sbjct: 734 LVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAF 779



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 154/333 (46%), Gaps = 31/333 (9%)

Query: 76  VFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
            F ++  MR    RP  +++  L G L+ ++  D +L+LF+++   G   + + +  LI 
Sbjct: 184 AFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIR 243

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
            F + GRV     +L  +  +   PD V +   I       ++  A   F +++  G  L
Sbjct: 244 VFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVL 303

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           D  TY ++I  LC+      A+ LFE M + N +      P A  Y+T+I          
Sbjct: 304 DDVTYTSMIGVLCKADRLNEAVELFEHM-DQNKQV-----PCAYAYNTMI---------- 347

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +G+     F   +  +      R  C+   +++ C++  L +  ++  A + F+ + +
Sbjct: 348 --MGYGMAGKFE--DAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKK 403

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
             + PN+ TYNI+I  LC  G++      ET  ++   +   GLFP++ T NI+++  CK
Sbjct: 404 DAI-PNLSTYNIMIDMLCKAGKL------ETALVVRDAMKDAGLFPNVITVNIMVDRLCK 456

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             R+     IF  +      PDAVT+ SLI+ L
Sbjct: 457 AQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGL 489



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 122/295 (41%), Gaps = 24/295 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   S+ IL   L K         LF  +   G   D   YN +I+ FCK G+V+  + +
Sbjct: 582 PDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQL 641

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P  VT+ S+I  L    R+ EA  LF + +  G EL+V  Y++LI+G  +
Sbjct: 642 LEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGK 701

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  + EE+            P+  T++ ++D L K    +  L   C  S   L
Sbjct: 702 VGRIDEAYLIMEELMQKG------LTPNVYTWNCLLDALVKAEEISEAL--VCFQSMKDL 753

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                Y          + +  LI GLCKI K   A   +Q + + G  PNV TY  +I G
Sbjct: 754 KCTPNY----------ITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISG 803

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           L   G + E         LF++    G   D   YN +I       R S  + +F
Sbjct: 804 LAKAGNIVEAD------TLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLF 852



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + + ++  +   P V ++N L   L K +     L  F+ +      P+  TY+I
Sbjct: 706 DEAYLIMEELMQ-KGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSI 764

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK+ + +  FV    + +  F P+  T+T++I  L     I+EA  LF K +  G
Sbjct: 765 LIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKG 824

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEE 220
              D   YN +I GL        A  LFEE
Sbjct: 825 GVADSAIYNAIIEGLSNANRASDAYRLFEE 854



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/334 (19%), Positives = 125/334 (37%), Gaps = 59/334 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A+  F +   +        ++N L   +A+T+ ++ +  + + +++ G  P   T   
Sbjct: 111 NNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIE 170

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++  F K  ++   F  +  + +  F P    +T+LI  L           LF +++  G
Sbjct: 171 IVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELG 230

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             ++V  + TLI    R G    AL+L +EM + +       EPD + Y+          
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNS------LEPDVVLYN---------- 274

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                               +C ID   K  K+ +A + F  + 
Sbjct: 275 ------------------------------------VC-IDCFGKAGKVDMAWKXFHEMK 297

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL+ + VTY  +I  LC   +++E         LF+ ++     P  Y YN +I  + 
Sbjct: 298 ANGLVLDDVTYTSMIGVLCKADRLNEAVE------LFEHMDQNKQVPCAYAYNTMIMGYG 351

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             G+    + +  R       P  V++  ++  L
Sbjct: 352 MAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCL 385


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 144/310 (46%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 120 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAML 179

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 180 ASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 239

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 240 LAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDK- 292

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L  A E  + L +  +  + V Y  LI GLC +G
Sbjct: 293 -----------ITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEG 341

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 342 RSVDAEK-------MLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 394

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 395 PSVVTYNVLM 404



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP   S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 136 AQSVFD-AITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLI 194

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 195 NGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 254

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L ++M+          +PD ITY+T+IDG CKE   
Sbjct: 255 PDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKG------LKPDKITYTTLIDGCCKEG-- 306

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                   +++F    ++        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 307 ------VLVSAFEHRKRLI----QENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSV 356

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 357 GLNPDTGTYTMIINEFCKKGDVWKGSK------LLKEMQRDGHVPSVVTYNVLMN 405



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 184 QPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 243

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L     PD +T+ +LI  LC +  + +A  L   +   G + D  TY TLI+G C
Sbjct: 244 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCC 303

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G  + A    + +   N         D + Y+ +I GLC+E  S +            
Sbjct: 304 KEGVLVSAFEHRKRLIQEN------IRLDDVVYTALISGLCQEGRSVD------------ 345

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V +      +  +I+  CK   +    +L + + R G +P+VVTYN+L+ 
Sbjct: 346 AEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 405

Query: 327 G 327
           G
Sbjct: 406 G 406



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 29/142 (20%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK---------- 338
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +          
Sbjct: 88  VLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 147

Query: 339 ------HYETVFLLFKRLN-------------STGLFPDLYTYNILINCFCKIGRVSSGF 379
                  Y T+   + RL              ++G+ PD+YTY++LIN  CK  ++    
Sbjct: 148 LRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAD 207

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  +L     P+ VTFT+LI
Sbjct: 208 ELFDEMLVKGLVPNGVTFTTLI 229


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 147/338 (43%), Gaps = 35/338 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++ IL             + L   +   G  PD  TYN+L+N  CK GR+      
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P+ +T   +++ +C+  R M+A  L T++   GC   V T+N LIN LCR
Sbjct: 74  LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR 133

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-SCMASFSA 266
            G    A+++ E+M          C P++++Y+ ++ G CKE      + +   M S   
Sbjct: 134 KGLLGRAIDILEKMPTHG------CTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGC 187

Query: 267 LNKMAFYFPLVRVQC----------------------LCLNFLCLIDGLCKISKLKIARE 304
              +  Y  ++   C                      + + +  +IDGL K+ K   A E
Sbjct: 188 YPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVE 247

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L   +   GL P+V+TY+ LI GL  +G+++E   +      F  +   G+ P+ +TYN 
Sbjct: 248 LLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKF------FHDVEGFGVKPNAFTYNS 301

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           ++   CK  +          ++     P  V++T LI+
Sbjct: 302 IMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIE 339



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 133/299 (44%), Gaps = 31/299 (10%)

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
           +PD  TY ILI   C    V     +L  +      PD VT+  L+  +C E R+ EA  
Sbjct: 13  YPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIK 72

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
               +  +G + +V T+N ++  +C TG  + A  L  EM          C P  +T++ 
Sbjct: 73  FLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKG------CSPSVVTFNI 126

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +I+ LC++      LG     +   L KM    P        L++  L+ G CK  K+  
Sbjct: 127 LINFLCRKG----LLG----RAIDILEKM----PTHGCTPNSLSYNPLLHGFCKEKKMDR 174

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A +  + +   G  P++VTYN ++  LC DG++D          L  +L+S G  P L T
Sbjct: 175 AIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVD------AAVELLNQLSSKGCSPVLIT 228

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
           YN +I+   K+G+      +   +      PD +T++SLI       K+ E   FF  V
Sbjct: 229 YNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDV 287



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 125/257 (48%), Gaps = 28/257 (10%)

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL R L     PD +T+T LI+  CAES + +A  L  ++   GC+ DV TYN L+NG+C
Sbjct: 3   VLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMC 62

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A+     M +    +G   +P+ IT++ I+  +C              ++   
Sbjct: 63  KEGRLDEAIKFLNSMPS----YG--SQPNVITHNIILRSMC--------------STGRW 102

Query: 267 LNKMAFYFPLVRVQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           ++       +VR  C    + F  LI+ LC+   L  A ++ + +P  G  PN ++YN L
Sbjct: 103 MDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPL 162

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + G C + +MD    Y  + +      S G +PD+ TYN ++   CK G+V +   +  +
Sbjct: 163 LHGFCKEKKMDRAIQYLEIMV------SRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQ 216

Query: 385 ILPSCFTPDAVTFTSLI 401
           +     +P  +T+ ++I
Sbjct: 217 LSSKGCSPVLITYNTVI 233



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 117/251 (46%), Gaps = 20/251 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FNIL   L +       + + +++   G  P+  +YN L++ FCK  ++      
Sbjct: 119 PSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQY 178

Query: 148 LGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  ++ R C+ PD VT+ +++  LC + ++  A  L  +L   GC   + TYNT+I+GL 
Sbjct: 179 LEIMVSRGCY-PDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLS 237

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G T  A+ L  EM  G G      +PD ITYS++I GL +E      + F        
Sbjct: 238 KVGKTDQAVELLHEM-RGKG-----LKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFG 291

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +   AF +              ++ GLCK  +   A +    +   G  P  V+Y ILI 
Sbjct: 292 VKPNAFTYN------------SIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIE 339

Query: 327 GLCNDGQMDET 337
           G+ N+G   E 
Sbjct: 340 GIANEGLAKEA 350



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 86/221 (38%), Gaps = 13/221 (5%)

Query: 12  RFADRLSRKPTSSISENEPSY-PTTTATLRLTVKDRASLEQFLKERCKSSGEGDI----- 65
           R  D L + PT   + N  SY P      +    DRA   Q+L+         DI     
Sbjct: 139 RAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAI--QYLEIMVSRGCYPDIVTYNT 196

Query: 66  --TSITPNEALCVFDYMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG 120
             T++  +  +     +LN   S+   P + ++N +   L+K    D  + L   +   G
Sbjct: 197 MLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKG 256

Query: 121 LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180
           L PD  TY+ LI    + G+V         +      P+A T+ S++  LC   +   A 
Sbjct: 257 LKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAI 316

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
                +   GC+    +Y  LI G+   G    AL L  E+
Sbjct: 317 DFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNEL 357


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 158/377 (41%), Gaps = 69/377 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTS-FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           ++AL +FD M   +   PP T  + I+   L + K  D V  L   + ++G  PD  T N
Sbjct: 218 DDALKMFDEM--TQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCN 275

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            L++ FCK+G++   F +L    +  +      ++SLI  L    R  E      K+   
Sbjct: 276 ALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKA 335

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G E DV  Y  LI G C  G    ALN+  +M            PD   Y+ +I G C  
Sbjct: 336 GIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRG------LSPDTYCYNALIKGFC-- 387

Query: 250 AGSANFLGFSCMASFSALNKM-AFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELF 306
                            L+K  +    + +  C      +  LI G+C+   L  AR++F
Sbjct: 388 -------------DVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIF 434

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY---------ETVFL------------ 345
             +   G  P+++T+N LI GLC  G+++E +H           ++FL            
Sbjct: 435 NQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDT 494

Query: 346 ---------------------LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
                                L  +L  +G+ PD+ TYN+LIN FCK   ++  F +F  
Sbjct: 495 ASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRE 554

Query: 385 ILPSCFTPDAVTFTSLI 401
           +     +PD+VT+ +LI
Sbjct: 555 LQLKGHSPDSVTYGTLI 571



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 146/314 (46%), Gaps = 15/314 (4%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           +  ++ L   L + K YD V    +++   G+ PD   Y ILI  FC++G V +   +L 
Sbjct: 306 IKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLN 365

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            + +   +PD   + +LIK  C    + +A +L  ++    C     TY  LI G+CR G
Sbjct: 366 DMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNG 425

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFSAL 267
               A  +F +M N      + C P  +T++ +IDGLCK  E   A  L +      +  
Sbjct: 426 LLDEARQIFNQMEN------LGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPS 479

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             +       RV     +   +++ LC+   +  A +L   L  +G++P+++TYN+LI G
Sbjct: 480 LFLRLSQGADRVMDTA-SLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLING 538

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C      + K+    F LF+ L   G  PD  TY  LI+ F ++ R    F +  +++ 
Sbjct: 539 FC------KAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVK 592

Query: 388 SCFTPDAVTFTSLI 401
           +  TP +  +  L+
Sbjct: 593 NGCTPSSAVYKCLM 606



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 140/326 (42%), Gaps = 25/326 (7%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           + + + N     PP T F++L    AK+   +  +  F ++   G  PD +TYN +++  
Sbjct: 118 ILEELKNSNIQIPPPT-FSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVM 176

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            +         V  ++L+  + P+  TF  L+  LC   +  +A  +F ++   G   + 
Sbjct: 177 VQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNT 236

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             Y  +++GLC+   T     L   M          C PD+IT + ++DG CK  G  + 
Sbjct: 237 MIYTIILSGLCQAKRTDDVHRLLNTMKVSG------CCPDSITCNALLDGFCK-LGQID- 288

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                 A      K  +   +         +  LIDGL +  +    +E  + + +AG+ 
Sbjct: 289 ---EAFALLQLFEKEGYVLGIK-------GYSSLIDGLFRAKRYDEVQEWCRKMFKAGIE 338

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+VV Y ILIRG C  G +D   +      +   +   GL PD Y YN LI  FC +G +
Sbjct: 339 PDVVLYTILIRGFCEVGMVDYALN------MLNDMTQRGLSPDTYCYNALIKGFCDVGLL 392

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLI 401
                +   I  +   P + T+T LI
Sbjct: 393 DKARSLQLEISKNDCFPTSCTYTILI 418


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 148/315 (46%), Gaps = 24/315 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F IL   L K         L + +   G FP+   +N +++  CK GR +  +  
Sbjct: 8   PTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGY 67

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +     +P  VT+  LI   C E ++  A  +  ++   G E +  TYNT ++GLC+
Sbjct: 68  IETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCK 127

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    AL LF  M             D   Y+T+IDGLC+    A         ++S L
Sbjct: 128 YGKVDDALALFRAMTEKKIRL------DVYGYTTLIDGLCQAGKLAE--------AYSLL 173

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           ++M     + +  C    +  ++  LCK S++  A +LF+ +  +G++P+ +T+ +++ G
Sbjct: 174 DEMENSGCVPKPGC----YNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFG 229

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C   ++D+        LL +++ S GL P    YN LI+   + GRVS  + +   ++ 
Sbjct: 230 YCRGHRIDD------ALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMIS 283

Query: 388 SCFTPDAVTFTSLIK 402
              +P++ T+  + K
Sbjct: 284 RGLSPNSRTYALMRK 298



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 136/286 (47%), Gaps = 26/286 (9%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIME 178
           G  P   T+ IL++  CK  R++  F ++  +  R CF P+A+ F  ++  LC E R  E
Sbjct: 5   GCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCF-PNALVFNGIMDALCKEGRSAE 63

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A      +R  G    + TYN LI+G C+      AL + +EM  G G      EP+ +T
Sbjct: 64  AYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEM-TGRGH-----EPNHVT 117

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+T + GLCK     + L     A F A+ +        +++     +  LIDGLC+  K
Sbjct: 118 YNTFLHGLCKYGKVDDAL-----ALFRAMTEK-------KIRLDVYGYTTLIDGLCQAGK 165

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           L  A  L   +  +G +P    YN ++  LC   +++E         LFKR+  +G+ PD
Sbjct: 166 LAEAYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHK------LFKRMTGSGILPD 219

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             T+ +++  +C+  R+    ++  ++  +   P  V + +LI  L
Sbjct: 220 WLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDAL 265



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 8/164 (4%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P   ++N     L K    D  L+LF+ +    +  D Y Y  LI+  C+ G+++ 
Sbjct: 109 RGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAE 168

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
            + +L  +  S   P    + +++  LC  SRI EA  LF ++   G   D  T+  ++ 
Sbjct: 169 AYSLLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVF 228

Query: 204 GLCRTGHTI-VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           G CR GH I  AL L ++M +          P  + Y+T+ID L
Sbjct: 229 GYCR-GHRIDDALLLLQQMKSAG------LAPREVIYNTLIDAL 265



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL +F  M   +  R  V  +  L   L +        SL   +  +G  P    YN 
Sbjct: 132 DDALALFRAMTE-KKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNA 190

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++  CK  R++    +  R+  S   PD +TF  ++   C   RI +A  L  +++  G
Sbjct: 191 ILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAG 250

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
                  YNTLI+ L R G    A  L +EM
Sbjct: 251 LAPREVIYNTLIDALNRAGRVSEAYRLLQEM 281



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 1/149 (0%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + D M N     P    +N +   L K    +    LFKR+  +G+ PD  T+ ++
Sbjct: 168 EAYSLLDEMEN-SGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMM 226

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +  +C+  R+    ++L ++  +   P  V + +LI  L    R+ EA  L  ++   G 
Sbjct: 227 VFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGL 286

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEE 220
             +  TY  +        + +V L+  +E
Sbjct: 287 SPNSRTYALMRKQQTDDSNLVVELDYRKE 315


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 146/317 (46%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    FNI F   AK    D  + +F ++   GL PD  +Y  LI+  CK+GRV    V 
Sbjct: 28  PNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVK 87

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++    TP+ V F+SL+  LC+  +  +   LF ++   G   ++  +NT++  LC+
Sbjct: 88  FNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCK 147

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  +    L + +       GV   PD I+Y+T+IDG C               +    
Sbjct: 148 EGRVMEGQRLVDSIEC----MGV--RPDVISYNTLIDGHC------------LAGTIDEA 189

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +K+      V ++    ++  L+ G CK  ++  A  LF+ +   G+ P VVTYN ++ G
Sbjct: 190 SKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHG 249

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           L       +TK +     L+  + ++G    +YTYN ++N  CK   V   F +F  +  
Sbjct: 250 LF------QTKRFSEAKELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCS 303

Query: 388 SCFTPDAVTFTSLIKIL 404
                + +TFT +I  L
Sbjct: 304 KGLQLNIITFTIMIGAL 320



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 135/325 (41%), Gaps = 63/325 (19%)

Query: 87  RPPVTSFNILFG--CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           RP V S+N L    CLA T   D    L + +   GL P+ ++YN L++ +CK GR+   
Sbjct: 167 RPDVISYNTLIDGHCLAGT--IDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSA 224

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           + +  ++L +  TP  VT+ +++  L    R  EA  L+  +   G +  ++TYNT++NG
Sbjct: 225 YSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNG 284

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           LC++     A  +F+                          LC +    N + F+ M   
Sbjct: 285 LCKSNCVDEAFKMFQS-------------------------LCSKGLQLNIITFTIM--- 316

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
                                    I  L K  + + A +LF ++P  GL+P+VVTY ++
Sbjct: 317 -------------------------IGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRVV 351

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
              L  +G ++E         LF  +   G  P+    N L+      G +S       +
Sbjct: 352 AENLIEEGSLEEFDS------LFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSK 405

Query: 385 ILPSCFTPDAVTFTSLIKILEINSF 409
           +    F+ +A T + LI I   + +
Sbjct: 406 LDERNFSVEASTTSMLISIFSSDEY 430



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 130/290 (44%), Gaps = 32/290 (11%)

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
            G+ P+ + +NI  + + K G +     +  ++ +   +PDAV++ +LI  LC   R+ +
Sbjct: 24  NGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDD 83

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A   F ++   G   ++  +++L+ GLC          LF EM N      V   P+ + 
Sbjct: 84  AEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLN------VGIHPNIVF 137

Query: 239 YSTIIDGLCKEA----GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           ++TI+  LCKE     G        CM               VR   +  N   LIDG C
Sbjct: 138 FNTILCNLCKEGRVMEGQRLVDSIECMG--------------VRPDVISYN--TLIDGHC 181

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
               +  A +L + +   GL PN  +YN L+ G C  G++D      + + LF+++ S G
Sbjct: 182 LAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRID------SAYSLFRKMLSNG 235

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + P + TYN +++   +  R S    ++  ++ S       T+ +++  L
Sbjct: 236 ITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGL 285



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 129/274 (47%), Gaps = 24/274 (8%)

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++ +   G +S    +L  ++ +  +P+   F            I +A  +F K+R  G
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  +Y  LI+ LC+ G    A   F +M N     GV   P+ + +S+++ GLC   
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINE----GVT--PNIVVFSSLVYGLC--- 111

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                     +  +  + ++ F    V +    + F  ++  LCK  ++   + L  S+ 
Sbjct: 112 ---------SIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIE 162

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+ P+V++YN LI G C  G +DE         L + + S GL P+ ++YN L++ +C
Sbjct: 163 CMGVRPDVISYNTLIDGHCLAGTIDEASK------LLEGMVSVGLKPNSFSYNTLLHGYC 216

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K GR+ S + +F ++L +  TP  VT+ +++  L
Sbjct: 217 KAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGL 250


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 158/358 (44%), Gaps = 50/358 (13%)

Query: 71  NEALCVFDYML--NMRPSRPPVTSF-NILFGCLAKT---KHYDTVLSLFKRLNLTGLFPD 124
           +EA  +++ ML  N  P+    TS     F C  K    K Y+ +L L       G  PD
Sbjct: 496 DEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRL-------GCSPD 548

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
               N  ++C  K G +  G  +   I    F PDA ++T LI  L       EA  LF 
Sbjct: 549 LLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFY 608

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
            ++  GC LD   YNT+I+G C++G    A  L EEM           EP  +TY ++ID
Sbjct: 609 TMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH------EPTVVTYGSVID 662

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKI 301
           GL K                  L++    F   + + + LN   +  LIDG  K+ ++  
Sbjct: 663 GLAK---------------IDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDE 707

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  + + L + GL PNV T+N L+  L    ++ E        + F+ +      P+  T
Sbjct: 708 AYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEA------LVCFQSMKDLKCTPNYIT 761

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQ 412
           Y+ILI+  CKI + +  FV +  +    F P+  T+T++I        I+E ++ F +
Sbjct: 762 YSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEK 819



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/318 (28%), Positives = 144/318 (45%), Gaps = 33/318 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+N +  CL +    D  L  F+ +    + P+  TYNI+I+  CK G++    VV
Sbjct: 373 PSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVV 431

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +  +   P+ +T   ++  LC   R+ +A ++F  L    C  D  TY +LI GL R
Sbjct: 432 RDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGR 491

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  L+E+M + N        P+A+ Y+++I          NF  F C       
Sbjct: 492 HGRVDEAYKLYEQMLDANQ------IPNAVVYTSLI---------RNF--FKCGRKEDG- 533

Query: 268 NKMAFYFPLVRVQC----LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
                Y  ++R+ C    L LN    +D + K  +++  R LFQ +   G +P+  +Y I
Sbjct: 534 --HKIYNEMLRLGCSPDLLLLN--TYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTI 589

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GL   G   E   YE    LF  +   G   D   YN +I+ FCK G+V+  + +  
Sbjct: 590 LIHGLVKAGFAHEA--YE----LFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLE 643

Query: 384 RILPSCFTPDAVTFTSLI 401
            +      P  VT+ S+I
Sbjct: 644 EMKTKGHEPTVVTYGSVI 661



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 155/346 (44%), Gaps = 33/346 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +F+  L+ +  RP   ++  L   L +    D    L++++      P+   Y  
Sbjct: 461 DDACSIFE-GLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTS 519

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  F K GR   G  +   +LR   +PD +   + +  +     I +  ALF +++  G
Sbjct: 520 LIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLG 579

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  +Y  LI+GL + G    A  LF  M          C  D   Y+T+IDG CK +
Sbjct: 580 FIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQG------CVLDTRAYNTVIDGFCK-S 632

Query: 251 GSANFLGFSCMASFSALNKMAF--YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           G  N        ++  L +M    + P V      + +  +IDGL KI +L  A  LF+ 
Sbjct: 633 GKVN-------KAYQLLEEMKTKGHEPTV------VTYGSVIDGLAKIDRLDEAYMLFEE 679

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
               G+  NVV Y+ LI G    G++DE       +L+ + L   GL P++YT+N L++ 
Sbjct: 680 AKSKGIELNVVIYSSLIDGFGKVGRIDEA------YLIMEELMQKGLTPNVYTWNCLLDA 733

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----KILEINSFF 410
             K   +S   V F  +     TP+ +T++ LI    KI + N  F
Sbjct: 734 LVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAF 779



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 154/333 (46%), Gaps = 31/333 (9%)

Query: 76  VFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
            F ++  MR    RP  +++  L G L+ ++  D +L+LF+++   G   + + +  LI 
Sbjct: 184 AFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIR 243

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
            F + GRV     +L  +  +   PD V +   I       ++  A   F +++  G  L
Sbjct: 244 VFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVL 303

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           D  TY ++I  LC+      A+ LFE M + N +      P A  Y+T+I          
Sbjct: 304 DDVTYTSMIGVLCKADRLNEAVELFEHM-DQNKQV-----PCAYAYNTMI---------- 347

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +G+     F   +  +      R  C+   +++ C++  L +  ++  A + F+ + +
Sbjct: 348 --MGYGMAGKFE--DAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKK 403

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
             + PN+ TYNI+I  LC  G++      ET  ++   +   GLFP++ T NI+++  CK
Sbjct: 404 DAI-PNLSTYNIMIDMLCKAGKL------ETALVVRDAMKDAGLFPNVITVNIMVDRLCK 456

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             R+     IF  +      PDAVT+ SLI+ L
Sbjct: 457 AQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGL 489



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 122/295 (41%), Gaps = 24/295 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   S+ IL   L K         LF  +   G   D   YN +I+ FCK G+V+  + +
Sbjct: 582 PDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQL 641

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P  VT+ S+I  L    R+ EA  LF + +  G EL+V  Y++LI+G  +
Sbjct: 642 LEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGK 701

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  + EE+            P+  T++ ++D L K    +  L   C  S   L
Sbjct: 702 VGRIDEAYLIMEELMQKG------LTPNVYTWNCLLDALVKAEEISEAL--VCFQSMKDL 753

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                Y          + +  LI GLCKI K   A   +Q + + G  PNV TY  +I G
Sbjct: 754 KCTPNY----------ITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISG 803

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           L   G + E         LF++    G   D   YN +I       R S  + +F
Sbjct: 804 LAKAGNIVEAD------TLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLF 852



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + + ++  +   P V ++N L   L K +     L  F+ +      P+  TY+I
Sbjct: 706 DEAYLIMEELMQ-KGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSI 764

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK+ + +  FV    + +  F P+  T+T++I  L     I+EA  LF K +  G
Sbjct: 765 LIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKG 824

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEE 220
              D   YN +I GL        A  LFEE
Sbjct: 825 GVADSAIYNAIIEGLSNANRASDAYRLFEE 854



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/334 (19%), Positives = 125/334 (37%), Gaps = 59/334 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A+  F +   +        ++N L   +A+T+ ++ +  + + +++ G  P   T   
Sbjct: 111 NNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIE 170

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++  F K  ++   F  +  + +  F P    +T+LI  L           LF +++  G
Sbjct: 171 IVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELG 230

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             ++V  + TLI    R G    AL+L +EM + +       EPD + Y+          
Sbjct: 231 YAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNS------LEPDVVLYN---------- 274

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                               +C ID   K  K+ +A + F  + 
Sbjct: 275 ------------------------------------VC-IDCFGKAGKVDMAWKFFHEMK 297

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL+ + VTY  +I  LC   +++E         LF+ ++     P  Y YN +I  + 
Sbjct: 298 ANGLVLDDVTYTSMIGVLCKADRLNEAVE------LFEHMDQNKQVPCAYAYNTMIMGYG 351

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             G+    + +  R       P  V++  ++  L
Sbjct: 352 MAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCL 385


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 161/340 (47%), Gaps = 31/340 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           ++L  F  M+ ++   P   SFN     LAK+ + D     F        F D Y++ I 
Sbjct: 56  QSLDSFKLMV-LKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQF-DVYSFGIT 113

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  FC+ G VS GF +L ++     +P+   +T LI+  C    I +A  +F+++   G 
Sbjct: 114 IKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGL 173

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             + + Y  +ING  + G+      L+++M       GV+  P+  TY+++I   C++  
Sbjct: 174 AANQYIYTIMINGFFKKGYKKDGFELYQKMK----LVGVL--PNLYTYNSLITEYCRDGK 227

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            +  L F     F  ++K         V C  + +  LI GLC+  ++  A  L + + R
Sbjct: 228 LS--LAFKV---FDEISKRG-------VACNAVTYNILIGGLCRKGQVSKAEGLLERMKR 275

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           A + P   T+N+L+ GLCN GQ+D+   Y       ++L   GL P L TYNILI+ F K
Sbjct: 276 AHINPTTRTFNMLMDGLCNTGQLDKALSY------LEKLKLIGLCPTLVTYNILISGFSK 329

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411
           +G  S    +   +     +P  VT+T L     +N+F R
Sbjct: 330 VGNSSVVSELVREMEDRGISPSKVTYTIL-----MNTFVR 364



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 141/317 (44%), Gaps = 30/317 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  + IL     +    D    +F R++  GL  ++Y Y I+IN F K G    GF +
Sbjct: 140 PNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFEL 199

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++      P+  T+ SLI + C + ++  A  +F ++   G   +  TYN LI GLCR
Sbjct: 200 YQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCR 259

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  L E M   +        P   T++ ++DGLC                   L
Sbjct: 260 KGQVSKAEGLLERMKRAH------INPTTRTFNMLMDGLCNTG---------------QL 298

Query: 268 NKMAFYFPLVRVQCLC---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           +K   Y   +++  LC   + +  LI G  K+    +  EL + +   G+ P+ VTY IL
Sbjct: 299 DKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTIL 358

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           +        ++  K YE +F L KR+   GL PD +TY +LI+  C  G +     ++  
Sbjct: 359 MNTFVRSDDIE--KAYE-MFHLMKRI---GLVPDQHTYGVLIHGLCIKGNMVEASKLYKS 412

Query: 385 ILPSCFTPDAVTFTSLI 401
           ++     P+ V + ++I
Sbjct: 413 MVEMHLQPNDVIYNTMI 429



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 119/293 (40%), Gaps = 35/293 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L     +         +F  ++  G+  +  TYNILI   C+ G+VS    +
Sbjct: 210 PNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGL 269

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L R+ R+   P   TF  L+  LC   ++ +A +   KL++ G    + TYN LI+G  +
Sbjct: 270 LERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSK 329

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFSA 266
            G++ V   L  EM +          P  +TY+ +++   +       +  F  M     
Sbjct: 330 VGNSSVVSELVREMEDRG------ISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGL 383

Query: 267 LNKMAFYFPLVRVQCLCLNFL----------------------CLIDGLCKISKLKIARE 304
           +     Y  L+   C+  N +                       +I+G CK      A +
Sbjct: 384 VPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALK 443

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
             + + + G+ PNV +Y   I+ LC DG+  E K       L K +   GL P
Sbjct: 444 FLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKR------LLKEMTEAGLKP 490


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 166/377 (44%), Gaps = 63/377 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V SFN +  CL K +  D  LSLF+ +      P+  TYNI+I+  C  GRV   + +
Sbjct: 352 PSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRI 410

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +  +   P+ +T   ++  LC   ++ EA  +F      GC  D  TY +LI+GL +
Sbjct: 411 LDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGK 470

Query: 208 TGHTIVALNLFEEMAN-GNGEFGVV----------------------------CEPDAIT 238
            G    A  LFE+M + G+    VV                            C+PD   
Sbjct: 471 KGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTL 530

Query: 239 YSTIIDGLCK----EAGSANF-----LGF-SCMASFSAL----------NKMAFYFPLVR 278
            +T +D + K    E G   F      GF   + S+S L           + +  F  ++
Sbjct: 531 LNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMK 590

Query: 279 VQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
            Q   L+   +  ++DG CK  K+  A E+ + +    + P V TY  ++ GL    ++D
Sbjct: 591 QQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLD 650

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           E       ++LF+   S G+  ++  Y+ LI+ F K+GR+   ++I   ++    TP+  
Sbjct: 651 EA------YMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVY 704

Query: 396 TFTS----LIKILEINS 408
           T+ S    L+K  EIN 
Sbjct: 705 TWNSLLDALVKAEEINE 721



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 134/295 (45%), Gaps = 24/295 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++IL   L K        ++F  +   G   D   YN +++ FCK G+V   + +
Sbjct: 561 PDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEI 620

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +   C  P   T+ +++  L    R+ EA  LF + +  G EL+V  Y++LI+G  +
Sbjct: 621 LEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGK 680

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  + EEM            P+  T+++++D L K A   N      +  F ++
Sbjct: 681 VGRIDEAYLILEEMMKKG------LTPNVYTWNSLLDALVK-AEEIN----EALVCFQSM 729

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +M       +       +  LI+GLC++ K   A   +Q + + GL+PNVVTY  +I G
Sbjct: 730 KEM-------KCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISG 782

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           L   G + +       + LF+R  + G  PD  ++N LI       R    + +F
Sbjct: 783 LAKVGNITDA------YSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVF 831



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 153/364 (42%), Gaps = 54/364 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F+ ML+   +  PV   +++       +  D    +FK L   G  PD    N 
Sbjct: 475 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDG-HKIFKELIRRGCKPDLTLLNT 533

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            ++C  K G V  G ++   I    F PD  +++ LI  L    +  E + +F  ++  G
Sbjct: 534 YMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQG 593

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             LD   YN +++G C++G    A  + EEM           +P   TY  I+DGL K  
Sbjct: 594 FALDARAYNAVVDGFCKSGKVHKAYEILEEMKEK------CVQPTVATYGAIVDGLAK-- 645

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQ 307
                           L++    F   + + + LN   +  LIDG  K+ ++  A  + +
Sbjct: 646 -------------IDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILE 692

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDET-----------------------------K 338
            + + GL PNV T+N L+  L    +++E                              +
Sbjct: 693 EMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQ 752

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
            Y   F+ ++ +   GL P++ TY  +I+   K+G ++  + +F R   +   PDA +F 
Sbjct: 753 KYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFN 812

Query: 399 SLIK 402
           +LI+
Sbjct: 813 ALIE 816



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 146/349 (41%), Gaps = 52/349 (14%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P +  +N+   C  K  + D     F  L   GL PD  +Y  +I   CK GR+     
Sbjct: 246 EPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEE 305

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++      P A  + ++I    +  R  +A  L  +LR  GC   V ++N+++  L 
Sbjct: 306 LFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLG 365

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      AL+LFE M           EP++ TY+ IID LC        LG     ++  
Sbjct: 366 KKRKVDEALSLFEVMKKD-------AEPNSSTYNIIIDMLC--------LGGRVEEAYRI 410

Query: 267 LNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           L++M  A  FP      L +N   ++D LCK  KL+ A ++F+S  + G  P+ VTY  L
Sbjct: 411 LDEMEHASLFP----NLLTVNI--MVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSL 464

Query: 325 IRGLCNDGQMDET-----------------------------KHYETVFLLFKRLNSTGL 355
           I GL   GQ+DE                                 E    +FK L   G 
Sbjct: 465 IDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGC 524

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            PDL   N  ++C  K G V  G +IF  I    F PD  +++ LI  L
Sbjct: 525 KPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGL 573



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 144/333 (43%), Gaps = 44/333 (13%)

Query: 96  LFGCLAKTKHYDTVL---SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           L   L + +  D  +   ++ +RL     F     Y +LI    +  R      +L ++ 
Sbjct: 150 LAAALVRARRLDDAVLAVAVMRRLKFRPAFS---AYTVLIGALAEARRPERALELLRQMQ 206

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
              +      FT+L++ L  E ++ +A AL  +++    E D+  YN  I+   + G+  
Sbjct: 207 EVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVD 266

Query: 213 VALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFS---- 265
           +A   F E+ A G        +PD ++Y+++I  LCK    G A  L     A  S    
Sbjct: 267 MAWKFFHELKAQG-------LKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCA 319

Query: 266 -ALNKMAF-----------YFPLVRVQ---CL--CLNFLCLIDGLCKISKLKIARELFQS 308
            A N M             Y  L R++   C+   ++F  ++  L K  K+  A  LF+ 
Sbjct: 320 YAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEV 379

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + +    PN  TYNI+I  LC  G+++E       + +   +    LFP+L T NI+++ 
Sbjct: 380 MKKDA-EPNSSTYNIIIDMLCLGGRVEEA------YRILDEMEHASLFPNLLTVNIMVDR 432

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            CK  ++   + IF         PD VT+ SLI
Sbjct: 433 LCKARKLEEAYKIFESASQRGCNPDCVTYCSLI 465



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 75/139 (53%), Gaps = 3/139 (2%)

Query: 71  NEALCVFDYMLNMRPSRPPVT-SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           NEAL  F  M  M+   PP T +++IL   L + + Y+     ++ +   GL P+  TY 
Sbjct: 720 NEALVCFQSMKEMKC--PPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYT 777

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +I+   K+G ++  + +  R   +   PDA +F +LI+ +   +R MEA  +F + R+ 
Sbjct: 778 TMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLR 837

Query: 190 GCELDVFTYNTLINGLCRT 208
           GC +++ +  +L++ L ++
Sbjct: 838 GCRINIKSCISLLDALNKS 856



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 100/274 (36%), Gaps = 59/274 (21%)

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L     +  R+    + +  + R  F P    +T LI  L    R   A  L  +++  G
Sbjct: 150 LAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVG 209

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            E+ V  + TL+  L R G    AL L +E+       G   EPD + Y+  ID   K A
Sbjct: 210 YEVGVHLFTTLVRALAREGQVADALALVDEVK------GSCLEPDIVLYNVCIDCFGK-A 262

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G+ +               MA+ F                               F  L 
Sbjct: 263 GNVD---------------MAWKF-------------------------------FHELK 276

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL P+ V+Y  +I  LC  G++ E +       LF ++ +    P  Y YN +I  + 
Sbjct: 277 AQGLKPDDVSYTSMIWVLCKAGRLGEAEE------LFAQMEAERSVPCAYAYNTMIMGYG 330

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             GR    + +  R+      P  V+F S++  L
Sbjct: 331 SAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL 364


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 167/384 (43%), Gaps = 63/384 (16%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L  R   P V SFN +  CL K +  D  LSLF+ +      P+  TYNI+I+  C  GR
Sbjct: 211 LRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAE-PNSSTYNIIIDMLCLGGR 269

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V   + +L  +  +   P+ +T   ++  LC   ++ EA  +F      GC  D  TY +
Sbjct: 270 VEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCS 329

Query: 201 LINGLCRTGHTIVALNLFEEMAN--------------------GNGEFGVV--------- 231
           LI+GL + G    A  LFE+M +                    G  E G           
Sbjct: 330 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRG 389

Query: 232 CEPDAITYSTIIDGLCK----EAGSANF-----LGF-SCMASFSAL----------NKMA 271
           C+PD    +T +D + K    E G   F      GF   + S+S L           + +
Sbjct: 390 CKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETS 449

Query: 272 FYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
             F  ++ Q   L+   +  ++DG CK  K+  A E+ + +    + P V TY  ++ GL
Sbjct: 450 NIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL 509

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
               ++DE       ++LF+   S G+  ++  Y+ LI+ F K+GR+   ++I   ++  
Sbjct: 510 AKIDRLDEA------YMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK 563

Query: 389 CFTPDAVTFTS----LIKILEINS 408
             TP+  T+ S    L+K  EIN 
Sbjct: 564 GLTPNVYTWNSLLDALVKAEEINE 587



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 153/364 (42%), Gaps = 54/364 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F+ ML+   +  PV   +++       +  D    +FK L   G  PD    N 
Sbjct: 341 DEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDG-HKVFKELIRRGCKPDLTLLNT 399

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            ++C  K G V  G ++   I    F PD  +++ LI  L    +  E + +F  ++  G
Sbjct: 400 YMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQG 459

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             LD   YN +++G C++G    A  + EEM           +P   TY  I+DGL K  
Sbjct: 460 FALDARAYNAVVDGFCKSGKVHKAYEILEEMKEK------CVQPTVATYGAIVDGLAK-- 511

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQ 307
                           L++    F   + + + LN   +  LIDG  K+ ++  A  + +
Sbjct: 512 -------------IDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILE 558

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDET-----------------------------K 338
            + + GL PNV T+N L+  L    +++E                              +
Sbjct: 559 EMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQ 618

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
            Y   F+ ++ +   GL P++ TY  +I+   K+G ++  + +F R   +   PDA +F 
Sbjct: 619 KYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFN 678

Query: 399 SLIK 402
           +LI+
Sbjct: 679 ALIE 682



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 146/349 (41%), Gaps = 52/349 (14%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P +  +N+   C  K  + D     F  L   GL PD  +Y  +I   CK GR+     
Sbjct: 112 EPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEE 171

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++      P A  + ++I    +  R  +A  L  +LR  GC   V ++N+++  L 
Sbjct: 172 LFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLG 231

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      AL+LFE M           EP++ TY+ IID LC        LG     ++  
Sbjct: 232 KKRKVDEALSLFEVMKKD-------AEPNSSTYNIIIDMLC--------LGGRVEEAYRI 276

Query: 267 LNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           L++M  A  FP      L +N   ++D LCK  KL+ A ++F+S  + G  P+ VTY  L
Sbjct: 277 LDEMEHASLFP----NLLTVNI--MVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSL 330

Query: 325 IRGLCNDGQMDET-----------------------------KHYETVFLLFKRLNSTGL 355
           I GL   GQ+DE                                 E    +FK L   G 
Sbjct: 331 IDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGC 390

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            PDL   N  ++C  K G V  G +IF  I    F PD  +++ LI  L
Sbjct: 391 KPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGL 439



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 132/292 (45%), Gaps = 24/292 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++IL   L K        ++F  +   G   D   YN +++ FCK G+V   + +
Sbjct: 427 PDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEI 486

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +   C  P   T+ +++  L    R+ EA  LF + +  G EL+V  Y++LI+G  +
Sbjct: 487 LEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGK 546

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  + EEM            P+  T+++++D L K A   N      +  F ++
Sbjct: 547 VGRIDEAYLILEEMMKKG------LTPNVYTWNSLLDALVK-AEEIN----EALVCFQSM 595

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +M       +       +  LI+GLC++ K   A   +Q + + GL+PNVVTY  +I G
Sbjct: 596 KEM-------KCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISG 648

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           L   G + +       + LF+R  + G  PD  ++N LI       R    +
Sbjct: 649 LAKVGNITDA------YSLFERFKANGGIPDAASFNALIEGMSNANRAMEAY 694



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 145/336 (43%), Gaps = 44/336 (13%)

Query: 96  LFGCLAKTKHYDTVL---SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           L   L + +  D  +   ++ +RL     F     Y +LI    +  R      +L ++ 
Sbjct: 16  LAAALVRARRLDDAVLAVAVMRRLKFRPAFS---AYTVLIGALAEARRPERALELLRQMQ 72

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
              +      FT+L++ L  E ++ +A AL  +++    E D+  YN  I+   + G+  
Sbjct: 73  EVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVD 132

Query: 213 VALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFS---- 265
           +A   F E+ A G        +PD ++Y+++I  LCK    G A  L     A  S    
Sbjct: 133 MACKFFHELKAQG-------LKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCA 185

Query: 266 -ALNKMAF-----------YFPLVRVQ---CL--CLNFLCLIDGLCKISKLKIARELFQS 308
            A N M             Y  L R++   C+   ++F  ++  L K  K+  A  LF+ 
Sbjct: 186 YAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEV 245

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + +    PN  TYNI+I  LC  G+++E       + +   +    LFP+L T NI+++ 
Sbjct: 246 MKKDA-EPNSSTYNIIIDMLCLGGRVEEA------YRILDEMEHASLFPNLLTVNIMVDR 298

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            CK  ++   + IF         PD VT+ SLI  L
Sbjct: 299 LCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGL 334


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 150/339 (44%), Gaps = 41/339 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L G L K        SLF  +   G+ P   TY  LI+ FCKM +    + +
Sbjct: 74  PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGL 133

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +     +P   ++ S+I  LC   ++ +A  LF ++++ GC+ D  TYNTLI+GLC 
Sbjct: 134 LQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCV 193

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-----KEAGSANFLGFSCMA 262
                 A +L   M   +       +PD IT++ +I+GLC     KEA    F+ F  MA
Sbjct: 194 KQRLHEAKDLLTVMVENS------FQPDKITFTALIEGLCTTDRIKEA----FVLFQGMA 243

Query: 263 SFSALNKMAFYFPLVRVQCL--------------------CLNFLCLIDGLCKISKLKIA 302
                  +  +  LV   C+                     + +  +   L +      A
Sbjct: 244 KQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRA 303

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
             L Q + R G+ PNVVTY    +GL       + K     +  F+R+   G+ PD+  Y
Sbjct: 304 ARLLQKMARRGVAPNVVTYTAFFKGL------GDWKEGMRAYREFRRMLEQGIEPDMVAY 357

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           N+L++ FCK  R+     +   +  S   P+ VT+ +L+
Sbjct: 358 NVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLV 396



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 123/289 (42%), Gaps = 28/289 (9%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+  +Y  L+   C+ G++      +  + R    PD  T+  +I  LC   RI  A   
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEF 67

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F  +     E DV TYNTL+ GLC+ G    A +LF  M       G    P  +TY+T+
Sbjct: 68  FETMP----EPDVVTYNTLLGGLCKNGRVAQACSLFGSME------GAGITPSDVTYTTL 117

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           ID  CK            M  F     +       +      ++  +I+GLCK  K+  A
Sbjct: 118 IDVFCK------------MCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQA 165

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            +LF+ +  AG  P+ VTYN LI GLC   ++ E K   TV +           PD  T+
Sbjct: 166 YQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMV------ENSFQPDKITF 219

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411
             LI   C   R+   FV+F  +      PD VT T L+  L I    R
Sbjct: 220 TALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLR 268



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 160/374 (42%), Gaps = 68/374 (18%)

Query: 53  LKERCKSSGEGDITSITPNEA-----------LCVFDY---MLNMRPSR---PPVTSFNI 95
           + + C   G  +   ITP++            +C F+    +L +  SR   P V S+  
Sbjct: 92  VAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCS 151

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
           +   L K +  D    LF+ + L G  PDR TYN LI+  C   R+     +L  ++ + 
Sbjct: 152 IINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENS 211

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           F PD +TFT+LI+ LC   RI EA  LF  +   GC  D+ T+  L++ LC       AL
Sbjct: 212 FQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPAL 271

Query: 216 N-----------------LFEEMANGNG------------EFGVVCEPDAITYSTIIDGL 246
           +                 +F E+    G              GV   P+ +TY+    GL
Sbjct: 272 SVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVA--PNVVTYTAFFKGL 329

Query: 247 CK-EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
              + G   +  F  M        M  Y               L+DG CK ++L +A ++
Sbjct: 330 GDWKEGMRAYREFRRMLEQGIEPDMVAYN-------------VLVDGFCKANRLDMAEKM 376

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
            + + ++GL PN+VTYN L+   C  G++      E +  L   + S G  PD+ T++ L
Sbjct: 377 VRYMDQSGLPPNIVTYNTLVGHHCRKGKV------EAIGELLHTMVSRGRQPDVATWSTL 430

Query: 366 INCFCKIGRVSSGF 379
           +    ++G+V + +
Sbjct: 431 VAGLFRVGQVDAAY 444



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 136/315 (43%), Gaps = 31/315 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   S+  L   L +T   D   S    +    L PD +TYN++I+  CK  R+S    
Sbjct: 7   KPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAI- 65

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
                  +   PD VT+ +L+  LC   R+ +A +LF  +   G      TY TLI+  C
Sbjct: 66  ---EFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFC 122

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      A  L + MA+        C P   +Y +II+GLCK              ++  
Sbjct: 123 KMCQFETAYGLLQLMASRK------CSPTVYSYCSIINGLCKNRKVDQ--------AYQL 168

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +M     L   +   + +  LI GLC   +L  A++L   +      P+ +T+  LI 
Sbjct: 169 FEEMK----LAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIE 224

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC   ++ E       F+LF+ +   G  PDL T+ +L++  C   ++     +  R  
Sbjct: 225 GLCTTDRIKEA------FVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVV-RNY 277

Query: 387 PSCFTPDAVTFTSLI 401
           P+C  P+AV   + I
Sbjct: 278 PAC--PEAVILYTPI 290



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 45/206 (21%)

Query: 228 FGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
           F   C+P+A++Y  ++  LC+       +  +C    S + +MA    +  V      + 
Sbjct: 2   FSQDCKPNALSYCYLVKALCRTGK----IDKAC----STIAEMAREKLVPDV----FTYN 49

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET---------- 337
            +ID LCK  ++  A E F+++P     P+VVTYN L+ GLC +G++ +           
Sbjct: 50  VVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGA 105

Query: 338 -------------------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
                                +ET + L + + S    P +Y+Y  +IN  CK  +V   
Sbjct: 106 GITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQA 165

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKIL 404
           + +F  +  +   PD VT+ +LI  L
Sbjct: 166 YQLFEEMKLAGCKPDRVTYNTLIHGL 191



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 1/143 (0%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V ++   F  L   K        F+R+   G+ PD   YN+L++ FCK  R+  
Sbjct: 313 RGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDM 372

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              ++  + +S   P+ VT+ +L+   C + ++     L   +   G + DV T++TL+ 
Sbjct: 373 AEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVA 432

Query: 204 GLCRTGHTIVALNLFEEMANGNG 226
           GL R G    A + F  +A   G
Sbjct: 433 GLFRVGQVDAAYS-FLNLAMSQG 454


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 142/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G ++ GF +   + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+                 L    F
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKF 312

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 313 ------------TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V  G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDGYK 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 119/262 (45%), Gaps = 19/262 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    +    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++    V+   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM           +PD  TY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG------LKPDKFTYTTLIDGNCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLETAFEYRKRMI----KENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQM 334
           GL P + TY ++I   C  G +
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV 397



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+   S P + ++N L   L K         L   + + GL PD++TY  LI
Sbjct: 260 AMEIYKQMLSQSLS-PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLI 318

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E R ++A  +  ++   G +
Sbjct: 319 DGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            ++ TY  +IN  C+ G       L +EM
Sbjct: 379 PEIGTYTMIINEFCKKGDVWXGSKLLKEM 407


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 144/324 (44%), Gaps = 34/324 (10%)

Query: 88  PPVTSFNILFGCLA--KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           P   S+N +   L   ++   D  +     L  +GL P + TYN +I+ +C+ G+V   F
Sbjct: 225 PDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAF 284

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
               +++   F PD  T   L++ LC E  +  A  LF      G  +D  TYNT+I+GL
Sbjct: 285 QFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGL 344

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G    A +L  EM     + G    PD  TY+ I+  L    G           +F 
Sbjct: 345 CKEGRFEEAFDLLAEME--EKKLG----PDCYTYNAILCALADAEGQVE-------KAFQ 391

Query: 266 ALNKM---AFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             NKM   +F   L         F C  L+ GLC    L  A +LF +    G   + VT
Sbjct: 392 FRNKMVEKSFKPDL---------FTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVT 442

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN +I GLC +G+ +     E   LL +     GL PD  TYN +I  +C+ G+V   F 
Sbjct: 443 YNTIISGLCKEGRFE-----EAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQ 497

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
              +++   F PD  T   L++ L
Sbjct: 498 FRNKMVEKSFKPDLFTCNILLRGL 521



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 138/313 (44%), Gaps = 35/313 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + AL +F+  ++   +   VT +N +   L K   ++    L   +    L PD YTYN 
Sbjct: 316 DNALKLFNTWISKGKAIDAVT-YNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNA 374

Query: 131 LINCFCKM-GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           ++       G+V   F    +++   F PD  T   L++ LC E  +  A  LF      
Sbjct: 375 ILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISK 434

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G  +D  TYNT+I+GLC+ G    A +L  EM   NG       PD  TY+TII G C+E
Sbjct: 435 GKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLV-----PDQTTYNTIILGYCRE 489

Query: 250 AGSANFLGFSCMASFSALNKM---AFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIARE 304
                        +F   NKM   +F   L         F C  L+ GLC+   L  A +
Sbjct: 490 G--------QVEKAFQFRNKMVEKSFKPDL---------FTCNILLRGLCREGMLVKALK 532

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           LF +    G   + VTYN +I GLC +G+      +E  F L   +    L PD YTYN 
Sbjct: 533 LFNTWISKGKAIDAVTYNTIISGLCKEGR------FEEAFDLLAEMKEKKLGPDCYTYNA 586

Query: 365 LINCFCKIGRVSS 377
           ++      GR+ +
Sbjct: 587 ILCALADAGRMEA 599



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 138/308 (44%), Gaps = 53/308 (17%)

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
           H   + +  KRL+L    P+  T N LIN   +    S   V L + +          FT
Sbjct: 153 HAAQIFNRMKRLHLK---PNLLTRNTLINALVRYP--SKPSVCLSKAI----------FT 197

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN--GLCRTGHTIVALNLFEEMA 222
           ++IK    ++++ EA  L  K++ F C  D  +YNT+++   LCR+G T  +++   E+ 
Sbjct: 198 NVIK-FGVKNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELL 256

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM---AFYFPLVRV 279
               E G+V  P  ITY+TII G C+E             +F   NKM   +F   L   
Sbjct: 257 ----ESGLV--PHQITYNTIIHGYCREG--------QVEKAFQFRNKMVEKSFKPDL--- 299

Query: 280 QCLCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                 F C  L+ GLC    L  A +LF +    G   + VTYN +I GLC +G+    
Sbjct: 300 ------FTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGR---- 349

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI-GRVSSGFVIFGRILPSCFTPDAVT 396
             +E  F L   +    L PD YTYN ++       G+V   F    +++   F PD  T
Sbjct: 350 --FEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFT 407

Query: 397 FTSLIKIL 404
              L++ L
Sbjct: 408 CNILLRGL 415



 Score = 43.1 bits (100), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + + NIL   L +       L LF      G   D  TYN +I+  CK GR    F 
Sbjct: 508 KPDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFD 567

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           +L  +      PD  T+ +++  L    R MEA    +K+
Sbjct: 568 LLAEMKEKKLGPDCYTYNAILCALADAGR-MEAEEFMSKI 606


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 161/387 (41%), Gaps = 51/387 (13%)

Query: 50  EQFLKERCKSSG---EGDITSITPNEAL-CVFD----YMLNM--RPSRPPVTSFNILFGC 99
           E  L+E     G   +G  TS+     L C FD    +++ M  R  +P      +L   
Sbjct: 357 EHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSG 416

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L +       + L+ RL   G   +  T N LI+  C+ G       +L  +L      D
Sbjct: 417 LCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLD 476

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
           ++++ +LI   C E ++ E   L  ++   G + D++TYN L++GLC  G    A  L+ 
Sbjct: 477 SISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWH 536

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMASFSALNKMAFYFP 275
           E    NG F     PDA TY  +IDG CK    E G      F  M +         Y  
Sbjct: 537 E-CKKNGNF-----PDAYTYGIMIDGYCKANRVEEGEK---LFQEMVTMKIEQNAVVYGT 587

Query: 276 LVRVQCLCLN----------------------FLCLIDGLCKISKLKIARELFQSLPRAG 313
           L+R  C   N                      +  LI GL  I  +  A +L   + + G
Sbjct: 588 LIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEG 647

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           L PNVV Y  LI G C  GQM +      V  + + ++   + P+  TY I+IN  CK+G
Sbjct: 648 LSPNVVCYTALIGGYCKLGQMHK------VDSILQEMSINNVHPNKITYTIMINGHCKLG 701

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSL 400
            + +   +   +      PDAVT+ +L
Sbjct: 702 NMKAAAKLLNEMAQKGIVPDAVTYNAL 728



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 153/358 (42%), Gaps = 44/358 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFG-CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +EA+ ++  +L    +   VTS  ++ G C A +K  +    L K +   GL  D  +YN
Sbjct: 424 SEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSK--EEAAKLLKEMLERGLVLDSISYN 481

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI   CK G+V  GF +   ++R    PD  T+  L+  LC   +I EA  L+ + +  
Sbjct: 482 TLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKN 541

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   D +TY  +I+G C+         LF+EM        +  E +A+ Y T+I   C+ 
Sbjct: 542 GNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVT------MKIEQNAVVYGTLIRAYCEN 595

Query: 250 AG-----------------------SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
                                    S+   G S +    + N++      +R + L  N 
Sbjct: 596 GNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQL---LDEMRKEGLSPNV 652

Query: 287 LC---LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           +C   LI G CK+ ++     + Q +    + PN +TY I+I G C  G M         
Sbjct: 653 VCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAK---- 708

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             L   +   G+ PD  TYN L N FCK G++     +   +     + D +T+T+LI
Sbjct: 709 --LLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLI 764



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 152/353 (43%), Gaps = 38/353 (10%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VFD M +   + P V  F+ +          D  + LF+++   G+ P+  TYN +I+  
Sbjct: 184 VFDIMCHCGVT-PDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGL 242

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK GR+   F    ++ +    P  VT+  LI  L    R  EA  +  ++   G   + 
Sbjct: 243 CKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNN 302

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCK--EAGS 252
             YNTLI+G CR G+   AL + ++M +NG         P+++T +++I G CK  +   
Sbjct: 303 VVYNTLIDGYCRIGNISTALQIRDDMISNG-------ISPNSVTCNSLIQGYCKSNQMEH 355

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVR--------------VQCLCLNF-------LCLID 291
           A  L    +     +N+  F   + R              ++ L  NF         L+ 
Sbjct: 356 AEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVS 415

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GLC+  K   A EL+  L   G   N VT N LI GLC  G  +E         L K + 
Sbjct: 416 GLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAK------LLKEML 469

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             GL  D  +YN LI   CK G+V  GF +   ++     PD  T+  L+  L
Sbjct: 470 ERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGL 522



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 166/376 (44%), Gaps = 63/376 (16%)

Query: 76  VFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
            F +   M   R  P + ++ +L   L K + +D    + K ++  G  P+   YN LI+
Sbjct: 251 AFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLID 310

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
            +C++G +S    +   ++ +  +P++VT  SLI+  C  +++  A  L  ++   G  +
Sbjct: 311 GYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVI 370

Query: 194 DVFTYNT-----------------------------------LINGLCRTGHTIVALNLF 218
           +  T+ +                                   L++GLC+ G    A+ L+
Sbjct: 371 NQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELW 430

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
             +     E G     + +T + +I GLC EAGS          +   L +M     L R
Sbjct: 431 YRLL----EKGFAA--NTVTSNALIHGLC-EAGSKE-------EAAKLLKEM-----LER 471

Query: 279 VQCL-CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
              L  +++  LI   CK  K++   +L + + R G+ P++ TYN+L+ GLCN G+++E 
Sbjct: 472 GLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEA 531

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   L+      G FPD YTY I+I+ +CK  RV  G  +F  ++      +AV +
Sbjct: 532 GG------LWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVY 585

Query: 398 TSLIKILEINSFFRQV 413
            +LI+    N   R+ 
Sbjct: 586 GTLIRAYCENGNMREA 601



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 131/294 (44%), Gaps = 24/294 (8%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  +P + ++N+L   L      +    L+      G FPD YTY I+I+ +CK  RV  
Sbjct: 506 RGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEE 565

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
           G  +   ++      +AV + +LI+  C    + EA  L   +R  G      TY++LI+
Sbjct: 566 GEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIH 625

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GL   G    A  L +EM            P+ + Y+ +I G CK            +  
Sbjct: 626 GLSNIGLVDSANQLLDEMRKEG------LSPNVVCYTALIGGYCK------------LGQ 667

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              ++ +     +  V    + +  +I+G CK+  +K A +L   + + G++P+ VTYN 
Sbjct: 668 MHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNA 727

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           L  G C +G+M+E         +   +++ G+  D  TY  LI+ + K   VSS
Sbjct: 728 LTNGFCKEGKMEE------ALKVCDLMSTGGISLDDITYTTLIDGWHKPLTVSS 775



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 139/334 (41%), Gaps = 53/334 (15%)

Query: 104 KH--YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           KH  +  V  LF  L   GLFP   T N L++   K   V   + V   +     TPD  
Sbjct: 139 KHLGFGVVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVY 198

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            F++++   C   R+ +A  LF K+   G   +V TYN +I+GLC+ G    A    E+M
Sbjct: 199 LFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKM 258

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA--FYFPLVRV 279
                      +P  +TY  +I+GL K      F   +C+     L +M+   Y P   V
Sbjct: 259 EKER------VKPSLVTYGVLINGLVK---LERFDEANCI-----LKEMSDRGYAPNNVV 304

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                 +  LIDG C+I  +  A ++   +   G+ PN VT N LI+G C   QM+  +H
Sbjct: 305 ------YNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEH 358

Query: 340 YETVFL-------------------LFKRLNSTGLF----------PDLYTYNILINCFC 370
                L                   L  R +S  LF          P+     +L++  C
Sbjct: 359 LLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLC 418

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + G+ S    ++ R+L   F  + VT  +LI  L
Sbjct: 419 QNGKQSEAIELWYRLLEKGFAANTVTSNALIHGL 452



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 8/169 (4%)

Query: 82  NMRPSRPPVTS--FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           +MR    P TS  ++ L   L+     D+   L   +   GL P+   Y  LI  +CK+G
Sbjct: 607 DMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLG 666

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++     +L  +  +   P+ +T+T +I   C    +  AA L  ++   G   D  TYN
Sbjct: 667 QMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYN 726

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            L NG C+ G    AL + + M+ G          D ITY+T+IDG  K
Sbjct: 727 ALTNGFCKEGKMEEALKVCDLMSTGGISL------DDITYTTLIDGWHK 769


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 160/362 (44%), Gaps = 60/362 (16%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           F+ ++ + P +P V +F+ L     K  + D    LF  +   G+ PD   Y+ILI+   
Sbjct: 295 FNMVVRIGP-KPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLF 353

Query: 137 KMGRVSHG-------------------------FVVLG----------RILRSCFTPDAV 161
           K GR+  G                         +V +G          R+L    +P+ V
Sbjct: 354 KAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVV 413

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           + + LIK  C   RI+EA  LF ++   G E  + TY+ LI G C++G+      L+E+M
Sbjct: 414 SCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDM 473

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
                     CEPD I YS +I+GLCK+    + L F   A    L+   F         
Sbjct: 474 IKKR------CEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVF--------- 518

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             LN   L+D  C++  +  A +++  +    +  + VTY ILI+G    G++DE     
Sbjct: 519 -TLN--TLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEA---- 571

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              +LF ++      PD+ TY  LI+  CK+ + S+G  IF  +  +   PD   +  LI
Sbjct: 572 --LMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLI 629

Query: 402 KI 403
            +
Sbjct: 630 NM 631



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 157/355 (44%), Gaps = 48/355 (13%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           ++  MLN   S P V S +IL     +         LF ++   G  P   TY+ LI  F
Sbjct: 399 IYKRMLNEGIS-PNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGF 457

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK G +  GF +   +++    PD + ++ LI  LC +  + +A   F +    G   +V
Sbjct: 458 CKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNV 517

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMA---------------NGNGEFGVVCE------- 233
           FT NTL++  CR    + A+ ++  M                 G  +FG V E       
Sbjct: 518 FTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQ 577

Query: 234 -------PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
                  PD ITY T+IDGLCK   S+  L   C+  F   N +A    +  V       
Sbjct: 578 MLKKDFKPDVITYCTLIDGLCKLKKSSAGL---CIFDFMCKNAVAPDIAIYNV------- 627

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LI+   +   L+ A  LF  +   G  P+V T+N +I   CN  ++D+         L
Sbjct: 628 --LINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQ------L 679

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           F ++ S  L P+  T+ ILI+ FC+ GR+    ++F ++L     P+ VT++ LI
Sbjct: 680 FAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLI 734



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 150/335 (44%), Gaps = 35/335 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  F+       K      V+ ++KR+   G+ P+  + +ILI  FC+ GR+     +  
Sbjct: 377 VVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFV 436

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           +IL+  F P  +T+++LI   C    + +   L+  +    CE D   Y+ LINGLC+ G
Sbjct: 437 QILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQG 496

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-------------------EA 250
               AL  F +  N          P+  T +T++D  C+                   +A
Sbjct: 497 LVGDALRFFFQAVNRG------LSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKA 550

Query: 251 GSANF-LGFSCMASFSALNK-MAFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIARELF 306
            +  + +     A F  +++ +  +F +++   +   + +  LIDGLCK+ K      +F
Sbjct: 551 DTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIF 610

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             + +  + P++  YN+LI     +G      H E    LF  +   G  PD++T+N +I
Sbjct: 611 DFMCKNAVAPDIAIYNVLINMHSREG------HLEAALGLFVHVVERGPKPDVFTFNTMI 664

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            C+C   R+     +F ++      P+A+TFT LI
Sbjct: 665 CCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILI 699



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 142/316 (44%), Gaps = 25/316 (7%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           Y++ M   +    ++ IL    A+    D  L LF ++      PD  TY  LI+  CK+
Sbjct: 541 YLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKL 600

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
            + S G  +   + ++   PD   +  LI     E  +  A  LF  +   G + DVFT+
Sbjct: 601 KKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTF 660

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           NT+I   C       A+ LF +M +          P+AIT++ +ID  C+E    +    
Sbjct: 661 NTMICCYCNFKRLDDAVQLFAKMTSEQ------LRPNAITFTILIDAFCREGRMDD---- 710

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK-ISKLKIARELFQSLPRAGLMPN 317
             M  FS + +      LV        + CLI G  K  S ++   +L+  +    + PN
Sbjct: 711 -AMLMFSKMLEEGPEPNLV-------TYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPN 762

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           +V+Y+ILI GLC  G M E          F+      L PD+  Y ILI  +CK+GR++ 
Sbjct: 763 IVSYSILIDGLCKRGLMKEAS------CAFRCALDKHLLPDVIAYTILIRGYCKVGRLTE 816

Query: 378 GFVIFGRILPSCFTPD 393
             +++  +L +  TPD
Sbjct: 817 AMMLYDNMLLNRLTPD 832



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 117/251 (46%), Gaps = 30/251 (11%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
            LC+FD+M       P +  +N+L    ++  H +  L LF  +   G  PD +T+N +I
Sbjct: 606 GLCIFDFMCK-NAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMI 664

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
            C+C   R+     +  ++      P+A+TFT LI   C E R+ +A  +F+K+   G E
Sbjct: 665 CCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPE 724

Query: 193 LDVFTYNTLINGLCRTGHTIVA-LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC---- 247
            ++ TY+ LI+G  ++   + + L L+ EM   N        P+ ++YS +IDGLC    
Sbjct: 725 PNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENN------IAPNIVSYSILIDGLCKRGL 778

Query: 248 -KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            KEA  A    F C      L  +  Y  L+R             G CK+ +L  A  L+
Sbjct: 779 MKEASCA----FRCALDKHLLPDVIAYTILIR-------------GYCKVGRLTEAMMLY 821

Query: 307 QSLPRAGLMPN 317
            ++    L P+
Sbjct: 822 DNMLLNRLTPD 832



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 129/275 (46%), Gaps = 24/275 (8%)

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
            Y  ++N F   G V  G      +++  F  D +T   ++K +  ++ I  A   F  +
Sbjct: 239 VYEFVMNRFMNKGEVEMGLRFHKALVQGGFGLDIITCNKILKGIWMQNDIGVADDYFNMV 298

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G + +V T++TLI+  C+ G+   A  LF+ MA GNG       PD I YS +IDGL
Sbjct: 299 VRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMA-GNG-----VTPDLIVYSILIDGL 352

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            K    A  L         AL+K         ++   + F   +D   KI  L    +++
Sbjct: 353 FK----AGRLEDGQRLLLVALDK--------GIKLDVVGFSSAMDAYVKIGDLGRVIQIY 400

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           + +   G+ PNVV+ +ILI+G C +G++ E         LF ++   G  P + TY+ LI
Sbjct: 401 KRMLNEGISPNVVSCSILIKGFCQNGRILEACG------LFVQILKLGFEPSILTYSALI 454

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             FCK G +  GF ++  ++     PD + ++ LI
Sbjct: 455 AGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLI 489



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 56/131 (42%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F  ML   P    VT   ++ G        ++ L L+  +    + P+  +Y+I
Sbjct: 709 DDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSI 768

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G +          L     PD + +T LI+  C   R+ EA  L+  + +  
Sbjct: 769 LIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNR 828

Query: 191 CELDVFTYNTL 201
              D F   TL
Sbjct: 829 LTPDRFLERTL 839


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 158/362 (43%), Gaps = 49/362 (13%)

Query: 71  NEALCVFDYMLNMRP--SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           N AL  +++++  +     P   +FN++   + +    D  + +F+ + L    PD YTY
Sbjct: 149 NRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTY 208

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           + L++  CK  R+     +L  +      P+ V F  LI  LC +  +  AA L   + +
Sbjct: 209 STLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFL 268

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            GC  +  TYN L++GLC  G    A++L  +M +        C P+ +T+ T+I+G   
Sbjct: 269 KGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNK------CVPNDVTFGTLINGFVM 322

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           +  +++  G   + S  A       +           +  LI GLCK  K   A EL++ 
Sbjct: 323 QGRASD--GTRVLVSLEARGHRGNEYV----------YSSLISGLCKEGKFNQAMELWKE 370

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHY---------------------------- 340
           +   G  PN + Y+ LI GLC +G++DE + +                            
Sbjct: 371 MVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGD 430

Query: 341 -ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
                L++K + +     +   Y+ILIN  CK G+     +++ ++L      D V ++S
Sbjct: 431 SHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSS 490

Query: 400 LI 401
           +I
Sbjct: 491 MI 492



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           + PN +T+N++I+ +C  G +D+         +F+ +      PD YTY+ L++  CK  
Sbjct: 166 IHPNALTFNLVIKAMCRLGLVDKA------IEVFREIPLRNCAPDNYTYSTLMHGLCKEE 219

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           R+     +   +      P+ V F  LI  L
Sbjct: 220 RIDEAVSLLDEMQVEGTFPNLVAFNVLISAL 250


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 146/345 (42%), Gaps = 51/345 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L   L KT + +     F  +   GL PD  TYN LIN +CK G +     +
Sbjct: 333 PTVVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCL 392

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            G + R+   P  +T+  LI   C    +  A  L  ++    C  DV TY  L+NG C 
Sbjct: 393 FGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCM 452

Query: 208 TGHTIVALNLFEEMANGNGE---------------FGVVCEP--------------DAIT 238
             +  +    F+EM +   E                G +                 D +T
Sbjct: 453 VRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVT 512

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR--VQCLCLNFLCLIDGLCKI 296
           Y+ +IDGLCK                S  +    +  +V   ++  C+ + CLI   C+ 
Sbjct: 513 YNVLIDGLCKTG--------------SLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCER 558

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            +L  A+ +F  +  +GL P+VVTY I I   C  G +         +  F+++   G+ 
Sbjct: 559 GRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNL------YLAYGWFRKMLEEGVE 612

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           P+  TYN+L++  C++GR  S +  F  +L     P+  T+T LI
Sbjct: 613 PNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLI 657



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 143/317 (45%), Gaps = 29/317 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V   N +   L     +D + +++  +   G+ P  +TYN L++ FCK GR+     +
Sbjct: 192 PFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCKAGRMDQAVAL 251

Query: 148 LGRI---LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           L  +      C  P+ VT+  +I  L  +  + +AA L   +R+   +   FTYN LI G
Sbjct: 252 LKDMEARAAGCL-PNDVTYNVVINGLARKGELEKAAQLVDIMRL-SKKASAFTYNPLITG 309

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           L        A  L  EM N     G+V  P  +TY+T+IDGL K  G+A     +    F
Sbjct: 310 LLARDFVEKAGALLLEMENE----GIV--PTVVTYNTLIDGLFK-TGNAE----AAQVKF 358

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             +        L+        +  LI+G CK   LK A  LF  L RAGL P V+TYNIL
Sbjct: 359 DEMRAKGLLPDLI-------TYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNIL 411

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I G C  G ++  +       L + +      PD+ TY IL+N  C +  ++   + F  
Sbjct: 412 IDGYCRLGDLEGARR------LKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDE 465

Query: 385 ILPSCFTPDAVTFTSLI 401
           +L     PD   + + I
Sbjct: 466 MLSKGLEPDCFAYNTRI 482



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 140/336 (41%), Gaps = 35/336 (10%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++N L   L      +   +L   +   G+ P   TYN LI+   K G      V    +
Sbjct: 302 TYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEM 361

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 PD +T+ SLI   C    + +A  LF  L+  G    V TYN LI+G CR G  
Sbjct: 362 RAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDL 421

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-----------SC 260
             A  L EEM   +      C PD  TY+ +++G C     A    F            C
Sbjct: 422 EGARRLKEEMTEED------CLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDC 475

Query: 261 MASFSALN------------KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
            A  + ++            ++     L  +    + +  LIDGLCK   LK A  L+  
Sbjct: 476 FAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMK 535

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   GL  + VTY  LI   C  G++ E K+      +F  + ++GL P + TY I I+ 
Sbjct: 536 MVTDGLRLDCVTYTCLIHAHCERGRLIEAKN------IFDGMVASGLSPSVVTYTIFIHT 589

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +C+ G +   +  F ++L     P+ VT+  L+  L
Sbjct: 590 YCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHAL 625



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 151/376 (40%), Gaps = 73/376 (19%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL--TGLFPDRYTYNILINCFCKMGRVSHG 144
            P + ++N L     K    D  ++L K +     G  P+  TYN++IN   + G +   
Sbjct: 226 EPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKA 285

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL---------------------- 182
              L  I+R      A T+  LI  L A   + +A AL                      
Sbjct: 286 -AQLVDIMRLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDG 344

Query: 183 -------------FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
                        F ++R  G   D+ TYN+LING C+ G+   AL LF ++        
Sbjct: 345 LFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAG---- 400

Query: 230 VVCEPDAITYSTIIDGLC-----------KEAGSAN-----------FLGFSCMASFSAL 267
               P  +TY+ +IDG C           KE  +              +  SCM    A+
Sbjct: 401 --LGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAM 458

Query: 268 NKMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            ++ F   L + ++  C  +   I     I  +  A +L + +   G+  + VTYN+LI 
Sbjct: 459 VRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLID 518

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G + +       ++L+ ++ + GL  D  TY  LI+  C+ GR+     IF  ++
Sbjct: 519 GLCKTGSLKD------AYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMV 572

Query: 387 PSCFTPDAVTFTSLIK 402
            S  +P  VT+T  I 
Sbjct: 573 ASGLSPSVVTYTIFIH 588



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 123/283 (43%), Gaps = 26/283 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++ IL       ++   V   F  +   GL PD + YN  I+    +G +++ F +
Sbjct: 438 PDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQL 497

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++    + D VT+  LI  LC    + +A  L+ K+   G  LD  TY  LI+  C 
Sbjct: 498 REEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCE 557

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            G  I A N+F+ M A+G         P  +TY+  I   C+          +   ++  
Sbjct: 558 RGRLIEAKNIFDGMVASG-------LSPSVVTYTIFIHTYCRRG--------NLYLAYGW 602

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM        V+   + +  L+  LC++ + + A + F  +   GL+PN  TY +LI 
Sbjct: 603 FRKMLEE----GVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLID 658

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
           G C +G      ++     L+  ++  G+ PD  T+N L   F
Sbjct: 659 GSCKEG------NWVHAIRLYCEMHQKGIHPDHCTHNALFKGF 695



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 2/153 (1%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +FD M+    S P V ++ I      +  +       F+++   G+ P+  TYN+L
Sbjct: 563 EAKNIFDGMVASGLS-PSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVL 621

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  C+MGR    +     +L     P+  T+T LI   C E   + A  L+ ++   G 
Sbjct: 622 MHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGI 681

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
             D  T+N L  G    GH   A+   E +  G
Sbjct: 682 HPDHCTHNALFKGFGE-GHMYDAVQYLENVVLG 713


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 147/325 (45%), Gaps = 27/325 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL V D ML  R   P V ++NIL     K + Y   + L   +   G  P+  TYN+L
Sbjct: 25  DALSVLDDML-CRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVL 83

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  C  G V     +L  +      P  V + +++K LC+  R  +A  L T++    C
Sbjct: 84  MDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENC 143

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T+N +I  LCR G    A+ L E+M+         C  + +TY+ II+GLC++  
Sbjct: 144 PPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG------CTANIVTYNAIINGLCEQRN 197

Query: 252 SANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
               +G  S M S+     +  Y  L++             GLC  ++   A EL  ++ 
Sbjct: 198 VDGAMGLLSKMKSYGCKPDIVTYNTLLK-------------GLCSAARWVDAEELMDNMT 244

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           + G +P+ VT+N LI  LC  G M +         +FK++   G  P+  TY+ +I+   
Sbjct: 245 QNGCLPDNVTFNTLIGFLCQKGLMVD------AIEVFKQMPDKGCTPNSITYSTIISGLA 298

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAV 395
           K  ++     +F  +    F PD +
Sbjct: 299 KATKLDQALELFNEMGHKGFNPDKI 323



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 129/285 (45%), Gaps = 30/285 (10%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
           P+ YTYN LI+  C+ G+V     VL  +L R C  PD VT+  L++  C      +A  
Sbjct: 5   PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGC-APDVVTYNILLEATCKGRGYRQAME 63

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L   +R  GC  +  TYN L++G+C  G    AL L   + +        C+P  + Y+T
Sbjct: 64  LIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHG------CKPSTVNYNT 117

Query: 242 IIDGLC--KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           ++ GLC  +  G A+ L    +      N+  F                +I  LC+   L
Sbjct: 118 VLKGLCSAERWGDADELVTEMLRENCPPNEATFNV--------------VIYSLCRKGLL 163

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
           + A +L + + + G   N+VTYN +I GLC      E ++ +    L  ++ S G  PD+
Sbjct: 164 QQAIQLLEKMSKHGCTANIVTYNAIINGLC------EQRNVDGAMGLLSKMKSYGCKPDI 217

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            TYN L+   C   R      +   +  +   PD VTF +LI  L
Sbjct: 218 VTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFL 262



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 161/356 (45%), Gaps = 37/356 (10%)

Query: 61  GEGDITSITPNEALCVFDYMLNMRPS---RPPVTSFNILFGCLAKTKHYDTVLSLFKRLN 117
           GEGD+     ++AL     +L   PS   +P   ++N +   L   + +     L   + 
Sbjct: 89  GEGDV-----DDAL----ELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEML 139

Query: 118 LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177
                P+  T+N++I   C+ G +     +L ++ +   T + VT+ ++I  LC +  + 
Sbjct: 140 RENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVD 199

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
            A  L +K++ +GC+ D+ TYNTL+ GLC     + A  L + M   NG     C PD +
Sbjct: 200 GAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQ-NG-----CLPDNV 253

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           T++T+I  LC++      L    +  F  +       P        + +  +I GL K +
Sbjct: 254 TFNTLIGFLCQKG-----LMVDAIEVFKQM-------PDKGCTPNSITYSTIISGLAKAT 301

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           KL  A ELF  +   G  P+ + Y +L   L +D  ++E    +TV    ++L  +G+ P
Sbjct: 302 KLDQALELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEA--IQTV----RKLQDSGISP 354

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
               YN ++   C+ G+      I   ++ S   PD +T+  LI+ L    +  + 
Sbjct: 355 HTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEA 410



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 146/330 (44%), Gaps = 26/330 (7%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P +P   ++N L   L +       LS+   +   G  PD  TYNIL+   CK GR    
Sbjct: 2   PVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCK-GRGYRQ 60

Query: 145 FVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
            + L  ++R+   TP+ VT+  L+  +C E  + +A  L   L   GC+     YNT++ 
Sbjct: 61  AMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLK 120

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GLC       A  L  EM   N      C P+  T++ +I  LC++             +
Sbjct: 121 GLCSAERWGDADELVTEMLREN------CPPNEATFNVVIYSLCRKG--------LLQQA 166

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              L KM+ +     +    + +  +I+GLC+   +  A  L   +   G  P++VTYN 
Sbjct: 167 IQLLEKMSKHGCTANI----VTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNT 222

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++GLC+  +  + +       L   +   G  PD  T+N LI   C+ G +     +F 
Sbjct: 223 LLKGLCSAARWVDAEE------LMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFK 276

Query: 384 RILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           ++     TP+++T++++I  L   +   Q 
Sbjct: 277 QMPDKGCTPNSITYSTIISGLAKATKLDQA 306



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 141/321 (43%), Gaps = 31/321 (9%)

Query: 83  MRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           +R + PP   +FN++   L +       + L ++++  G   +  TYN +IN  C+   V
Sbjct: 139 LRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNV 198

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                +L ++      PD VT+ +L+K LC+ +R ++A  L   +   GC  D  T+NTL
Sbjct: 199 DGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTL 258

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           I  LC+ G  + A+ +F++M +        C P++ITYSTII GL K       L     
Sbjct: 259 IGFLCQKGLMVDAIEVFKQMPDKG------CTPNSITYSTIISGLAKATKLDQALELFNE 312

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
                 N    Y  L      CLN             ++ A +  + L  +G+ P+ V Y
Sbjct: 313 MGHKGFNPDKIYQLLAE----CLN---------DDDTIEEAIQTVRKLQDSGISPHTVLY 359

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           N ++ GLC +G+       E    +   + S+G  PD  TY ILI      G    G++ 
Sbjct: 360 NAILLGLCRNGKT------EFAIDIMAYMVSSGCMPDDLTYVILIE-----GLAYEGYLN 408

Query: 382 FGRILPSCFTPDAVTFTSLIK 402
             R L        V   SLIK
Sbjct: 409 EARELLIKLCSRDVLVNSLIK 429


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 26/333 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ +F+  +      P   SFN++   + +  ++   L L +R+   G  PD  T+NI
Sbjct: 199 QDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNI 258

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           L++  C+  +V+ G  +L R+ R     P+ VT+TS+I   C   R+ +A +++  +   
Sbjct: 259 LVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLES 318

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +  TYN LING  +      A+ ++ ++          C PD +T+S++IDG C+ 
Sbjct: 319 GTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRR------CPPDVVTFSSLIDGYCR- 371

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
            G  +      M  +  + +         +Q     F  +I  LCK ++   A    + L
Sbjct: 372 CGQLD----DAMRIWKEMGQH-------HIQPNVYTFSIIIHSLCKQNRSAEALGFLREL 420

Query: 310 P-RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
             RA + P    YN +I  LC  GQ++E        L+   +   G  PD YTY ILI  
Sbjct: 421 NMRADIAPQTFIYNPVIDILCKGGQVEEAN------LIVTDMEEKGCHPDKYTYTILIIG 474

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            C  GR+     +F +++ +   PD +T  S I
Sbjct: 475 HCMKGRIPEAITLFHKMVETGCRPDKITVNSFI 507



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 132/287 (45%), Gaps = 24/287 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL-FPDRYTYNILINCFCKMGRVSHGFV 146
           P   + NIL   L + K  +    L +RL   G+  P+  TY  +I+ +CK GR+     
Sbjct: 251 PDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALS 310

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   +L S   P+ VT+  LI        +  A  ++ +L +  C  DV T+++LI+G C
Sbjct: 311 VYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYC 370

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G    A+ +++EM   +       +P+  T+S II  LCK+  SA  LGF        
Sbjct: 371 RCGQLDDAMRIWKEMGQHH------IQPNVYTFSIIIHSLCKQNRSAEALGF-----LRE 419

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           LN  A   P   +      +  +ID LCK  +++ A  +   +   G  P+  TY ILI 
Sbjct: 420 LNMRADIAPQTFI------YNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILII 473

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           G C  G++ E         LF ++  TG  PD  T N  I+C  K G
Sbjct: 474 GHCMKGRIPEA------ITLFHKMVETGCRPDKITVNSFISCVLKAG 514



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 152/337 (45%), Gaps = 30/337 (8%)

Query: 73  ALCVFDYMLNMRPSRPPV-TSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNI 130
           AL +F  + +   S PP   S++ +   L ++  +   L LF ++ + +G  PD   ++ 
Sbjct: 93  ALRIFSALHSPPLSVPPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSF 152

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +       G +     +L +  +     +   + +L+  L A  R  +A ALF      G
Sbjct: 153 VAGSCTNAGLLDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDG 212

Query: 191 C-ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-- 247
               D +++N +I G+CR G+   AL L E M     EFG  C PD IT++ ++DGLC  
Sbjct: 213 LYSPDGWSFNVVIKGVCRVGNFQKALELVERMT----EFG--CSPDTITHNILVDGLCRA 266

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K+    + L          L +     P V      + +  +I G CK  +++ A  ++ 
Sbjct: 267 KQVNRGHDL-------LRRLQRDGVCMPNV------VTYTSVISGYCKAGRMEDALSVYN 313

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +  +G  PN VTYN+LI G      M      E+   ++++L      PD+ T++ LI+
Sbjct: 314 DMLESGTRPNTVTYNVLINGYGKALDM------ESAVRMYRQLILRRCPPDVVTFSSLID 367

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +C+ G++     I+  +      P+  TF+ +I  L
Sbjct: 368 GYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSL 404


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 148/329 (44%), Gaps = 27/329 (8%)

Query: 74  LCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           L VFD M+      P V + N +   L          +++  +   G+ P   TYN +++
Sbjct: 165 LLVFDKMIR-NGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLD 223

Query: 134 CFCKMGRVSHGFVVLGRIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
            +CK GRV     +L  +  R C+ P+ VT+  L+  L  +  + +A  L  ++   G  
Sbjct: 224 SYCKEGRVDQALELLSEMQERGCY-PNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLN 282

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           +  +TYN LING C+ G  + A +L EEM N          P   TY+T++ GLCK    
Sbjct: 283 VSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRA------FPTLSTYNTLMYGLCKWVQV 336

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                      FS + K  F   +V       +F  L+ G C+   +  A  LF  L   
Sbjct: 337 T-----GVRLRFSDMLKSKFTPDIV-------SFNSLLYGYCRTGCISEAFLLFDELKCR 384

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
            L+P V+TYN LI GLC  G +D          L K +   GLFPD++TY IL+N   K+
Sbjct: 385 DLVPTVITYNTLIHGLCMWGYLD------AALRLKKEMTDQGLFPDIFTYTILVNGCFKL 438

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G VS     F  +L     PD   + + I
Sbjct: 439 GYVSMARGFFNEMLSKGLKPDRFAYNTRI 467



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 153/359 (42%), Gaps = 63/359 (17%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P   ++N+L   L+K    +    L + +  +GL    YTYN LIN FC+ G 
Sbjct: 241 MQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGL 300

Query: 141 VSHGFVVLGRI-----------------------------------LRSCFTPDAVTFTS 165
               F ++  +                                   L+S FTPD V+F S
Sbjct: 301 FVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNS 360

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225
           L+   C    I EA  LF +L+       V TYNTLI+GLC  G+   AL L +EM +  
Sbjct: 361 LLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTD-Q 419

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR--VQCLC 283
           G F     PD  TY+ +++G  K       LG+  MA         F+  ++   ++   
Sbjct: 420 GLF-----PDIFTYTILVNGCFK-------LGYVSMAR-------GFFNEMLSKGLKPDR 460

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             +   I G  KI+   +A  + + +  AG  P+V+TYN+ +  LC  G  +E       
Sbjct: 461 FAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACD---- 516

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             L + + S GL PD  TY  +IN F K G +     +F  +L     P  VT+T LI 
Sbjct: 517 --LLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIH 573



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 149/339 (43%), Gaps = 33/339 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD  L  R   P V ++N L   L    + D  L L K +   GLFPD +TY I
Sbjct: 372 SEAFLLFDE-LKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTI 430

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT---KLR 187
           L+N   K+G VS        +L     PD   + + I     E +I + +  F+   ++ 
Sbjct: 431 LVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRI---VGEMKIADTSVAFSMQEEML 487

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G   DV TYN  ++ LC+ G+   A +L E M +     G++  PD +TY++II+G  
Sbjct: 488 AAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSD----GLI--PDHVTYTSIINGFV 541

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELF 306
           K              +    N+M     L + V    + +  LI        L +A   F
Sbjct: 542 KNG--------HLRKAREVFNEM-----LSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYF 588

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +    +  NV+TYN +I GLC   +MDE   Y      F  +   G+ P+ ++Y ILI
Sbjct: 589 SKMLEKSVPANVITYNAIINGLCMTRRMDEAYKY------FDEMEEKGILPNKFSYTILI 642

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
           N  C +G       ++  +L     PD+ T +  +K L 
Sbjct: 643 NESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLH 681



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 153/370 (41%), Gaps = 45/370 (12%)

Query: 10  RMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFL---KERCKSSGEGDIT 66
           R+RF+D L  K T       P   +  + L    +     E FL   + +C+      IT
Sbjct: 340 RLRFSDMLKSKFT-------PDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVIT 392

Query: 67  SITPNEALCVFDYM---LNMRPSR------PPVTSFNILFGCLAKTKHYDTVLSLFKRLN 117
             T    LC++ Y+   L ++         P + ++ IL     K  +       F  + 
Sbjct: 393 YNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEML 452

Query: 118 LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177
             GL PDR+ YN  I    K+   S  F +   +L + F PD +T+   +  LC +    
Sbjct: 453 SKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFE 512

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
           EA  L   +   G   D  TY ++ING  + GH   A  +F EM +     GV   P  +
Sbjct: 513 EACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSK----GVA--PSVV 566

Query: 238 TYSTIIDG-LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           TY+ +I     K+     F+ FS M   S             V    + +  +I+GLC  
Sbjct: 567 TYTVLIHAHAAKQMLDLAFMYFSKMLEKS-------------VPANVITYNAIINGLCMT 613

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            ++  A + F  +   G++PN  +Y ILI   CN G      ++E    L++ +    + 
Sbjct: 614 RRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMG------YWEEALRLYREMLDRKIQ 667

Query: 357 PDLYTYNILI 366
           PD +T+++ +
Sbjct: 668 PDSFTHSVFL 677



 Score = 44.7 bits (104), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VF+ ML+ +   P V ++ +L    A  +  D     F ++    +  +  TYN +IN  
Sbjct: 552 VFNEMLS-KGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGL 610

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C   R+   +     +      P+  ++T LI + C      EA  L+ ++     + D 
Sbjct: 611 CMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDS 670

Query: 196 FTYNTLINGLCR 207
           FT++  +  L R
Sbjct: 671 FTHSVFLKNLHR 682


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 163/362 (45%), Gaps = 38/362 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + D M  +  + P   +FN+L   L K         L   + L G  P+  TYN 
Sbjct: 52  DEAVSLLDEM-QVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNS 110

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  C  G++     +L R++ +   P+ +TF +L+       R ++   +   L   G
Sbjct: 111 LVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKG 170

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              + F+Y++LI+GL + G     + L++EM     E G  C+P+ I YS +IDGLC+E 
Sbjct: 171 YRGNEFSYSSLISGLFKEGKGEHGMQLWKEMV----EKG--CKPNTIVYSALIDGLCREG 224

Query: 251 GSANFLGF--------SCMASFSALNKMAFYFPLVRVQCLCLNF------------LC-- 288
                  +            SF+  + M  YF    +    L +            +C  
Sbjct: 225 KPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYS 284

Query: 289 -LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI+GLCK  KLK A  +++ +   G+  +VV Y+ +I G CN       +  E    LF
Sbjct: 285 ILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCN------AQLVEQGMKLF 338

Query: 348 KRL--NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
            ++  ++  L PD+ TYNIL+N FC    VS    I   +L     PD +T    +K L 
Sbjct: 339 NQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLR 398

Query: 406 IN 407
            N
Sbjct: 399 DN 400



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 138/331 (41%), Gaps = 47/331 (14%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L +  + D  + +F+ ++      D YTY+ L++  C  GR+     +L  +      P+
Sbjct: 10  LCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPN 69

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V F  LI  LC +  +  A+ L   + + GC  +  TYN+L++GLC  G    A++L  
Sbjct: 70  PVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLN 129

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
            M          C P+ IT+ T++DG  K   + +  G   + S          F     
Sbjct: 130 RMVANK------CVPNDITFGTLVDGFVKHGRALD--GVRVLVSLEEKGYRGNEF----- 176

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                ++  LI GL K  K +   +L++ +   G  PN + Y+ LI GLC +G+ DE K 
Sbjct: 177 -----SYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKE 231

Query: 340 Y-----------------------------ETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           Y                                 L++K +           Y+ILIN  C
Sbjct: 232 YLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLC 291

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K G++    +++ ++L      D V ++S+I
Sbjct: 292 KNGKLKEALIVWKQMLSRGIKLDVVAYSSMI 322


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 163/362 (45%), Gaps = 38/362 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + D M  +  + P   +FN+L   L K         L   + L G  P+  TYN 
Sbjct: 227 DEAVSLLDEM-QVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNS 285

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  C  G++     +L R++ +   P+ +TF +L+       R ++   +   L   G
Sbjct: 286 LVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKG 345

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              + F+Y++LI+GL + G     + L++EM     E G  C+P+ I YS +IDGLC+E 
Sbjct: 346 YRGNEFSYSSLISGLFKEGKGEHGMQLWKEMV----EKG--CKPNTIVYSALIDGLCREG 399

Query: 251 GSANFLGF--------SCMASFSALNKMAFYFPLVRVQCLCLNF------------LC-- 288
                  +            SF+  + M  YF    +    L +            +C  
Sbjct: 400 KPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYS 459

Query: 289 -LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI+GLCK  KLK A  +++ +   G+  +VV Y+ +I G CN       +  E    LF
Sbjct: 460 ILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCN------AQLVEQGMKLF 513

Query: 348 KRL--NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
            ++  ++  L PD+ TYNIL+N FC    VS    I   +L     PD +T    +K L 
Sbjct: 514 NQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLR 573

Query: 406 IN 407
            N
Sbjct: 574 DN 575



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 145/344 (42%), Gaps = 47/344 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   SFN++   L +  + D  + +F+ ++      D YTY+ L++  C  GR+     
Sbjct: 172 QPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVS 231

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +      P+ V F  LI  LC +  +  A+ L   + + GC  +  TYN+L++GLC
Sbjct: 232 LLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLC 291

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A++L   M          C P+ IT+ T++DG  K   + +  G   + S   
Sbjct: 292 LKGKLDKAMSLLNRMVANK------CVPNDITFGTLVDGFVKHGRALD--GVRVLVSLEE 343

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                  F          ++  LI GL K  K +   +L++ +   G  PN + Y+ LI 
Sbjct: 344 KGYRGNEF----------SYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALID 393

Query: 327 GLCNDGQMDETKHY-----------------------------ETVFLLFKRLNSTGLFP 357
           GLC +G+ DE K Y                                 L++K +       
Sbjct: 394 GLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNH 453

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               Y+ILIN  CK G++    +++ ++L      D V ++S+I
Sbjct: 454 HEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMI 497



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 127/301 (42%), Gaps = 35/301 (11%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S++ L   L K    +  + L+K +   G  P+   Y+ LI+  C+ G+       L  +
Sbjct: 352 SYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEM 411

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                TP++ T++SL+        I +A  ++ ++    C      Y+ LINGLC+ G  
Sbjct: 412 KNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKL 471

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             AL ++++M +   +       D + YS++I G C    +A  +           N+M 
Sbjct: 472 KEALIVWKQMLSRGIKL------DVVAYSSMIHGFC----NAQLVE----QGMKLFNQML 517

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
            + P ++   +  N   L++  C  + +  A ++  ++   G  P+ +T +I ++ L ++
Sbjct: 518 CHNPKLQPDVVTYNI--LLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRDN 575

Query: 332 GQMDETKH-----YETVFLLFKRLNSTG------------LFPDLYTYNILINCFCKIGR 374
             MD  +       E V  L KR  + G            L P   T+ + +   CK  +
Sbjct: 576 --MDPPQDGREFLDELVVRLIKRQRTVGASNIIEVMLQKFLLPKPSTWALAVQQLCKPMK 633

Query: 375 V 375
           V
Sbjct: 634 V 634



 Score = 44.7 bits (104), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           + + PN +++N++I+ LC  G +D+         +F+ ++      D YTY+ L++  C 
Sbjct: 169 SNIQPNGLSFNLVIKALCRVGNVDQAVE------VFRGMSDRNCVADGYTYSTLMHGLCN 222

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            GR+     +   +      P+ V F  LI  L
Sbjct: 223 EGRIDEAVSLLDEMQVEGTFPNPVAFNVLISAL 255


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 34/327 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  ++++ + G L      +    LF+ +   G+ P  YTY ILI+ FCK G +      
Sbjct: 451 PDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNW 510

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +LR   TP+ VT+TSLI       ++ +A  LF  + + G + +V TY  LI+G C+
Sbjct: 511 FDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCK 570

Query: 208 TGHTIVALNLFEEMANGNGEFGVV----------CE-PDAITYSTIIDGLCK--EAGSAN 254
            G    A  ++  M  G+ E   +          CE P+ ITY  ++DGLCK      A+
Sbjct: 571 AGQIDKACQIYARM-QGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAH 629

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
            L  +   +    N++ +                LIDG CK  KL+ A+E+F  +   G 
Sbjct: 630 ELLDTMSVNGCEPNQIVYD--------------ALIDGFCKTGKLENAQEVFVKMSERGY 675

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            PN+ TY+ LI  L  + ++D       V  +  ++      P++  Y  +I+  CK+G+
Sbjct: 676 CPNLYTYSSLINSLFKEKRLD------LVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGK 729

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLI 401
               + +  ++      P+ +T+T++I
Sbjct: 730 TEEAYRLMLKMEEVGCYPNVITYTAMI 756



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 141/308 (45%), Gaps = 18/308 (5%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     +D    +   +   G  PD  TY+ +I   C   +V   F++   + ++   P
Sbjct: 427 CLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVP 486

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
              T+T LI   C    I +A   F ++    C  +V TY +LI+   +      A  LF
Sbjct: 487 SVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLF 546

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG--FSCMASFSALNKMAFYFPL 276
           E M           +P+ +TY+ +IDG CK AG  +     ++ M      + +  YF L
Sbjct: 547 EMMLLEGS------KPNVVTYTALIDGHCK-AGQIDKACQIYARMQGDIESSDIDMYFKL 599

Query: 277 VRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
               C   N +    L+DGLCK ++++ A EL  ++   G  PN + Y+ LI G C  G+
Sbjct: 600 DDNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGK 659

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           ++  +       +F +++  G  P+LYTY+ LIN   K  R+     +  ++L +  TP+
Sbjct: 660 LENAQE------VFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPN 713

Query: 394 AVTFTSLI 401
            V +T +I
Sbjct: 714 VVIYTDMI 721



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 166/445 (37%), Gaps = 126/445 (28%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A   FD ML    +   VT  +++   L   K +D    LF+ + L G  P+  TY  
Sbjct: 505 QQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDAN-KLFEMMLLEGSKPNVVTYTA 563

Query: 131 LINCFCKMGRVSHGFVVLGRIL----------------RSCFTPDAVTFTSLIKDLCAES 174
           LI+  CK G++     +  R+                   C TP+ +T+ +L+  LC  +
Sbjct: 564 LIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKAN 623

Query: 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN----------- 223
           R+ EA  L   + V GCE +   Y+ LI+G C+TG    A  +F +M+            
Sbjct: 624 RVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYS 683

Query: 224 -------GNGEFGVV-----------CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
                        +V           C P+ + Y+ +IDGLCK   +          ++ 
Sbjct: 684 SLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEE--------AYR 735

Query: 266 ALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            + KM        V C    + +  +IDG  KI K++   EL++ +   G  PN +TY +
Sbjct: 736 LMLKME------EVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRV 789

Query: 324 LIRGLCNDGQMDET-------------KH---YETVFLLFKR--LNSTGLFPDLYT---- 361
           LI   C+ G +DE              +H   Y  +   F R  + S GL  +L      
Sbjct: 790 LINHCCSTGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSENESV 849

Query: 362 -----YNILINCFCKIGR-------------------------------------VSSGF 379
                Y ILI+ F K GR                                     V   F
Sbjct: 850 PVESLYRILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLYTSLIESLSHASKVDKAF 909

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            ++  ++     P+  TF  LIK L
Sbjct: 910 ELYASMINKNVVPELSTFVHLIKGL 934



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 145/367 (39%), Gaps = 67/367 (18%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
           T++N L     +    DT   + + ++ +G   D  T        CK GR      +L  
Sbjct: 206 TTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCGDALSLLE- 264

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY------------ 198
             +  F PD V +  ++  LC  S   EA  +  ++R   C  +V TY            
Sbjct: 265 --KEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQ 322

Query: 199 -----------------------NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
                                  N+L++  C++     A  LF++M          C+P 
Sbjct: 323 LGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCG------CQPG 376

Query: 236 AITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
            + Y+  I  +C  +E   ++ L  +  A +S +  +      V V     NF      L
Sbjct: 377 YLLYNIFIGSICSNEELPGSDLLELAEKA-YSEMLDLGVVLNKVNVS----NF---ARCL 428

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           C   K   A E+   +   G +P+  TY+ +I  LC+  ++      E  FLLF+ +   
Sbjct: 429 CGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKV------EKAFLLFEEMKKN 482

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEI 406
           G+ P +YTY ILI+ FCK G +      F  +L    TP+ VT+TSLI       K+ + 
Sbjct: 483 GIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDA 542

Query: 407 NSFFRQV 413
           N  F  +
Sbjct: 543 NKLFEMM 549



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 148/410 (36%), Gaps = 85/410 (20%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  +L  F    CK+   GD  S+   E               P    +N +   L +  
Sbjct: 239 DGCTLGCFAYSLCKAGRCGDALSLLEKEEFV------------PDTVFYNRMVSGLCEAS 286

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
            +   + +  R+      P+  TY IL++     G++     +L  ++     P+   F 
Sbjct: 287 LFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFN 346

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT----GHTIVAL--NLF 218
           SL+   C       A  LF K+   GC+     YN  I  +C      G  ++ L    +
Sbjct: 347 SLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAY 406

Query: 219 EEMAN------------------GNGEFG----VVCE-------PDAITYSTIIDGLCKE 249
            EM +                  G G+F     ++CE       PD  TYS +I  LC  
Sbjct: 407 SEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDA 466

Query: 250 AG-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           +     FL F  M       K     P V        +  LID  CK   ++ AR  F  
Sbjct: 467 SKVEKAFLLFEEM-------KKNGIVPSV------YTYTILIDSFCKAGLIQQARNWFDE 513

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQM-DETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           + R    PNVVTY  LI       ++ D  K +E + L        G  P++ TY  LI+
Sbjct: 514 MLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLL-------EGSKPNVVTYTALID 566

Query: 368 CFCKIGRVSSGFVIFGRILP----------------SCFTPDAVTFTSLI 401
             CK G++     I+ R+                   C TP+ +T+ +L+
Sbjct: 567 GHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALV 616



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 120/312 (38%), Gaps = 21/312 (6%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
            N L     +   ++  L    RL   G      TYN LI  F +  ++   F+V   + 
Sbjct: 173 LNFLIQKCCRNGMWNVALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMS 232

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S F  D  T       LC   R  +A +L  K        D   YN +++GLC      
Sbjct: 233 NSGFRMDGCTLGCFAYSLCKAGRCGDALSLLEKEEFVP---DTVFYNRMVSGLCEASLFQ 289

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A+++ + M +      + C P+ +TY  ++ G C   G    LG  C    S +     
Sbjct: 290 EAMDILDRMRS------ISCIPNVVTYRILLSG-CLGKGQ---LG-RCKRILSMMMTEGC 338

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
           Y P   +      F  L+   CK      A +LF+ + + G  P  + YNI I  +C++ 
Sbjct: 339 Y-PNREM------FNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNE 391

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           ++  +   E     +  +   G+  +    +    C C  G+    F I   ++   F P
Sbjct: 392 ELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVP 451

Query: 393 DAVTFTSLIKIL 404
           D  T++ +I  L
Sbjct: 452 DDSTYSKVIGFL 463



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 112/281 (39%), Gaps = 45/281 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +++ L   L K K  D VL +  ++      P+   Y  +I+  CK+G+    + +
Sbjct: 677 PNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRL 736

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + ++      P+ +T+T++I       +I +   L+  +   GC  +  TY  LIN  C 
Sbjct: 737 MLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCS 796

Query: 208 TGHTIVALNLFEEMANG----------------NGEF----GVVCE-------PDAITYS 240
           TG    A  L +EM                   N EF    G++ E       P    Y 
Sbjct: 797 TGLLDEAHRLLDEMKQTYWPRHISSYRKIIEGFNREFITSIGLLDELSENESVPVESLYR 856

Query: 241 TIIDGLCKEA---GSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
            +ID   K     G+ N L   S   S +  NK  +                LI+ L   
Sbjct: 857 ILIDNFIKAGRLEGALNLLEEISSSPSLAVANKYLY--------------TSLIESLSHA 902

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           SK+  A EL+ S+    ++P + T+  LI+GL   G+  E 
Sbjct: 903 SKVDKAFELYASMINKNVVPELSTFVHLIKGLTRVGKWQEA 943


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 161/365 (44%), Gaps = 56/365 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYTYNI 130
           +AL VF+ M +     P + ++N+L         +   L LF+ +     + PDR+TYN 
Sbjct: 28  QALEVFETMKS-ESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNT 86

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C  G       +L  +       +  T++S+IK L  E++  E+  +  ++   G
Sbjct: 87  LISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAG 146

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  DVF +N ++ G  R+ +   A  +++ M     E G   +PD ++Y  +I GL K  
Sbjct: 147 CNPDVFAFNGVMQGFARSNNMEKAREVYQHMV----ESGY--KPDNVSYHILIHGLAK-- 198

Query: 251 GSANFLGFSCMASFSALNKMAF----YFPLVRVQCLCLNFLC------------------ 288
                +G     S   L++MA     Y P V      ++ LC                  
Sbjct: 199 -----IG-KLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEA 252

Query: 289 -----------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                      LI GLC+  K+  ARELF+ + +A + P+ V YN LI G C  G MDE 
Sbjct: 253 GCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEA 312

Query: 338 KHYETVFLLFKRLN-STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
           +       L++ ++   GL P + T+N LI+ FCK+G++     +   +       D  T
Sbjct: 313 EK------LYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCT 366

Query: 397 FTSLI 401
           +  LI
Sbjct: 367 YRILI 371



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 137/303 (45%), Gaps = 26/303 (8%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL--TGLFPDRYTYNILIN 133
           V+ +M+     +P   S++IL   LAK    D  L +   + +   G  P+  T++ LI+
Sbjct: 173 VYQHMVE-SGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIH 231

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             C+ G +     V G +L +   P+  T+T+LI  LC   ++++A  LF K+       
Sbjct: 232 GLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPP 291

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           D   YN+LI G C+ G    A  L+ EM+ G G      +P  +T++T+IDG CK     
Sbjct: 292 DAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAG-----LQPTIVTFNTLIDGFCK----- 341

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
                  +      N++        +      +  LI GL + +KL  A E+++ +    
Sbjct: 342 -------LGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKK 394

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
            + + V+    + GLC  G +D+       + +F+    +G  P+  T+ IL     K+G
Sbjct: 395 FLLDPVSCVSFVGGLCKTGNIDQ------AYAVFEATRKSGAVPNPETFRILSESLIKLG 448

Query: 374 RVS 376
           RV 
Sbjct: 449 RVE 451



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 137/317 (43%), Gaps = 35/317 (11%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +++ +   LAK       L +F+ +      P   TYN+LIN  C  G       +   +
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 152 LRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
            R     PD  T+ +LI  LC+      A  L +++R      +VFTY+++I  L +   
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              +  + EEM          C PD   ++ ++ G  +              S +     
Sbjct: 132 PEESYKVLEEM------MAAGCNPDVFAFNGVMQGFAR--------------SNNMEKAR 171

Query: 271 AFYFPLVR--VQCLCLNFLCLIDGLCKISK----LKIARELFQSLPRAGLMPNVVTYNIL 324
             Y  +V    +   +++  LI GL KI K    LKI  E+  ++  AG +PNV+T++ L
Sbjct: 172 EVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEM--AMRAAGYVPNVITFSTL 229

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I GLC  G++      E    +F  +   G  P+ YTY  LI   C+  +V     +F +
Sbjct: 230 IHGLCRTGEL------EKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEK 283

Query: 385 ILPSCFTPDAVTFTSLI 401
           +  +C  PDAV + SLI
Sbjct: 284 MTQACIPPDAVAYNSLI 300



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 129/287 (44%), Gaps = 45/287 (15%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           DA  F  +++ L     + +A  +F  ++   C   + TYN LIN  C  G    AL+LF
Sbjct: 11  DAYDF--VVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLF 68

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG----------------SANFLGFSCMA 262
           + M           EPD  TY+T+I GLC                    +AN   +S + 
Sbjct: 69  QSMKREK-----RVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSI- 122

Query: 263 SFSALNKMA----FYFPLVRVQCLCLN-----FLCLIDGLCKISKLKIARELFQSLPRAG 313
              +L K A     Y  L  +     N     F  ++ G  + + ++ ARE++Q +  +G
Sbjct: 123 -IKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESG 181

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
             P+ V+Y+ILI GL   G++DE+       L    + + G  P++ T++ LI+  C+ G
Sbjct: 182 YKPDNVSYHILIHGLAKIGKLDESLK----ILSEMAMRAAGYVPNVITFSTLIHGLCRTG 237

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
            +     +FG +L +   P+  T+T+LI       K+++    F ++
Sbjct: 238 ELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKM 284



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 56/149 (37%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  ++  M      +P + +FN L     K         L   +   GL  D  TY I
Sbjct: 310 DEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRI 369

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI    +  ++     V  ++    F  D V+  S +  LC    I +A A+F   R  G
Sbjct: 370 LIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSG 429

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFE 219
              +  T+  L   L + G    A  L E
Sbjct: 430 AVPNPETFRILSESLIKLGRVEDAQKLME 458


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 151/330 (45%), Gaps = 26/330 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL VF+ +L     +P + ++ IL          D  L L   +   GL PD +TYN++ 
Sbjct: 98  ALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVIT 157

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              CK G+V   F  +  +      PD +T+  L++ L  + +  E     +++   GCE
Sbjct: 158 RGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCE 217

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            +V TY+ LI+ LCR G    ++NL + M     E G+   PDA  Y  +I   C+E   
Sbjct: 218 PNVVTYSILISSLCRDGKIEESVNLVKVMK----EKGLT--PDAYCYDPLIAAFCREGKL 271

Query: 253 ANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
              + F  CM           + P +      +N+  ++  LCK      A E+F  L  
Sbjct: 272 DMAIEFLDCMICDG-------FLPDI------VNYNTIMAALCKNGNGDHAVEIFGKLDE 318

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G  PNV +YN ++  L + G       Y  + ++ + L S G+ PD+ TYN LI+C C+
Sbjct: 319 VGCPPNVSSYNTMLSALWSSGD-----RYRALGMISQML-SKGIDPDVITYNSLISCLCR 372

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G V     +   +L   F P+ V++ +++
Sbjct: 373 DGMVDEAIGLLADMLSGRFQPNIVSYKTVL 402



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 146/353 (41%), Gaps = 52/353 (14%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           +  +P V ++N +     K    ++  ++  R+   G  PD  T+NI+I  FC  G++  
Sbjct: 38  KHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDL 97

Query: 144 GFVVLGRILR--SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
              V   +L+  +C  P  +T+T LI+    E  I EA  L  ++   G E D FTYN +
Sbjct: 98  ALKVFEELLKDNNC-KPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVI 156

Query: 202 INGLCRTG-----------------------HTIVALNLFEEMANGNGE------FGVVC 232
             GLC+ G                       + I+   L  +     GE      F   C
Sbjct: 157 TRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGC 216

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF-YFPLVRVQCLCLNFLCLID 291
           EP+ +TYS +I  LC++      +    +     L   A+ Y PL             I 
Sbjct: 217 EPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPL-------------IA 263

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
             C+  KL +A E    +   G +P++V YN ++  LC +G  D          +F +L+
Sbjct: 264 AFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVE------IFGKLD 317

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             G  P++ +YN +++     G       +  ++L     PD +T+ SLI  L
Sbjct: 318 EVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCL 370



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 121/279 (43%), Gaps = 24/279 (8%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD      LI  F     +     V+G IL     PD   + ++I   C  +RI  A  +
Sbjct: 8   PDVILCTKLIKGFFNSRNIDKATRVMG-ILEKHGKPDVFAYNAVISGFCKANRIESAKTV 66

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             +++  G   DV T+N +I   C  G   +AL +FEE+   N      C+P  ITY+ +
Sbjct: 67  LDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNN-----CKPTLITYTIL 121

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           I+    E G    L          L    F + ++              GLCK  K+  A
Sbjct: 122 IEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVI------------TRGLCKEGKVDRA 169

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            E  ++L   G  P+V+TYNIL+R L N G+ DE + +         + S G  P++ TY
Sbjct: 170 FEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKW------MSEIFSRGCEPNVVTY 223

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +ILI+  C+ G++     +   +     TPDA  +  LI
Sbjct: 224 SILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLI 262



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 130/291 (44%), Gaps = 28/291 (9%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P V +++IL   L +    +  ++L K +   GL PD Y Y+ LI  FC+ G++  
Sbjct: 214 RGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDM 273

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
               L  ++   F PD V + +++  LC       A  +F KL   GC  +V +YNT+++
Sbjct: 274 AIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLS 333

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
            L  +G    AL +  +M +         +PD ITY+++I  LC++      +G   +A 
Sbjct: 334 ALWSSGDRYRALGMISQMLSKG------IDPDVITYNSLISCLCRDGMVDEAIGL--LAD 385

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
             +           R Q   +++  ++ GLCK  ++  A E+  ++   G  PN  TY +
Sbjct: 386 MLS----------GRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTL 435

Query: 324 LIRGLCNDGQMDETKHYETVFLL--------FKRLNSTGLFPDLYTYNILI 366
           LI G+   G   +         +        FKRLN T  FP L  Y   I
Sbjct: 436 LIEGIGFSGSRTQAMELANSLYIMNAISEDSFKRLNKT--FPLLDVYKGFI 484


>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
 gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
          Length = 607

 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 166/408 (40%), Gaps = 54/408 (13%)

Query: 29  EPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITS------ITPNEALCVFDYMLN 82
           EPS+  T A+L       A+L       C       + S       +P +A       L 
Sbjct: 71  EPSHAFTPASL-------ATLHSLAARHCIPPPSASLLSKLLARFSSPADAASFLRDSLA 123

Query: 83  MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142
                P V++FN L   L +  +   +  LF  +    + PD  TY IL+N  CK G V 
Sbjct: 124 AGAPAPDVSTFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLNRLCKAGLVG 183

Query: 143 HGFVVLGRILR--SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL--RVFGCELDVFTY 198
               VL R+    S    D V   +++  LC   R+ +A     +   +V GC  +  TY
Sbjct: 184 DALKVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQVHGCAPNTVTY 243

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSA-NF 255
           N L +  CR G   +A  + E M     + GV   P+ IT +TI+ GLC+    G+A +F
Sbjct: 244 NCLADACCRVGDIDMACQIVERME----KEGVT--PNVITMNTIVGGLCRVGRVGAALDF 297

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLN----------------------FLCLIDGL 293
                     A      Y  LV     C N                      +  +I GL
Sbjct: 298 FREKRTTWLEARGNAVTYSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMISGL 357

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
            +  +L  A  +  S+ +AG   +   YNILI G C   ++ E         LF+ +   
Sbjct: 358 TQAGRLVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQ------LFEEMKGA 411

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           GL PD+YTYN L++C CK G  S+   + G ++     P  VTF +L+
Sbjct: 412 GLQPDVYTYNTLLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLV 459



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 134/319 (42%), Gaps = 26/319 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP--DRYTYNILINCFCKMGRVSHGF 145
           P V + N + G L +       L  F+    T L    +  TY+ L++ F     V+   
Sbjct: 273 PNVITMNTIVGGLCRVGRVGAALDFFREKRTTWLEARGNAVTYSTLVSAFLHCNNVALAM 332

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +   +    + PDAV + ++I  L    R+++A  +   ++  G +LD   YN LI G 
Sbjct: 333 ELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNILIGGF 392

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           CR      A  LFEEM       G   +PD  TY+T++  LCK               FS
Sbjct: 393 CRKKRLHEAHQLFEEMK------GAGLQPDVYTYNTLLSCLCKAG------------DFS 434

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           A++++         Q   + F  L+ G CK  K   A ++F+S+  A + PN V YN LI
Sbjct: 435 AVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTLI 494

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
             LC   ++D          LF  +    +  ++ TYN L+            F +  ++
Sbjct: 495 DFLCKSREVD------VAIKLFDEMRENNVPANVTTYNALLKGLQDKNMPEKAFELMDQM 548

Query: 386 LPSCFTPDAVTFTSLIKIL 404
                TPD VT   L++ L
Sbjct: 549 KEERCTPDYVTMDVLMEWL 567



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 126/289 (43%), Gaps = 24/289 (8%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           +R    +++ L        +    + LF  +   G  PD   Y  +I+   + GR+    
Sbjct: 308 ARGNAVTYSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDAC 367

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +   + ++ F  D   +  LI   C + R+ EA  LF +++  G + DV+TYNTL++ L
Sbjct: 368 NIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCL 427

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G       L   M +        C+P  +T+ T++ G CK   +   L       F 
Sbjct: 428 CKAGDFSAVDELLGNMIDDG------CQPSVVTFGTLVHGYCKAGKTDEALKI-----FR 476

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           ++ +        R+Q   + +  LID LCK  ++ +A +LF  +    +  NV TYN L+
Sbjct: 477 SMGE-------ARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALL 529

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
           +GL  D  M      E  F L  ++      PD  T ++L+    +IG 
Sbjct: 530 KGL-QDKNMP-----EKAFELMDQMKEERCTPDYVTMDVLMEWLPEIGE 572



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 158/400 (39%), Gaps = 84/400 (21%)

Query: 52  FLKERCKSSGEGDITSI-----TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY 106
            L   CK+   GD   +     +P   +C    +LN            ++ G     +  
Sbjct: 172 LLNRLCKAGLVGDALKVLDRMSSPGSDVCADIVILN-----------TVVDGLCKIGRLQ 220

Query: 107 DTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           D ++ + +R+  + G  P+  TYN L +  C++G +     ++ R+ +   TP+ +T  +
Sbjct: 221 DAIVFVDERMRQVHGCAPNTVTYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNT 280

Query: 166 LIKDLCAESRIMEAAALFTKLRVFGCEL--DVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           ++  LC   R+  A   F + R    E   +  TY+TL++      +  +A+ LF EMA+
Sbjct: 281 IVGGLCRVGRVGAALDFFREKRTTWLEARGNAVTYSTLVSAFLHCNNVALAMELFHEMAD 340

Query: 224 GNGEFGVVCEPDAITYSTIIDGL---------CKEAGSANFLGFSCMASFSALNKMAFYF 274
                     PDA+ Y T+I GL         C  A S    GF        L++ A+  
Sbjct: 341 QG------YPPDAVMYFTMISGLTQAGRLVDACNIAASMKKAGFK-------LDRKAYNI 387

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ- 333
                         LI G C+  +L  A +LF+ +  AGL P+V TYN L+  LC  G  
Sbjct: 388 --------------LIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSCLCKAGDF 433

Query: 334 --MDE--------------------------TKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
             +DE                              +    +F+ +    + P+   YN L
Sbjct: 434 SAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTL 493

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
           I+  CK   V     +F  +  +    +  T+ +L+K L+
Sbjct: 494 IDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKGLQ 533



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 1/148 (0%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V +F  L     K    D  L +F+ +    + P+   YN LI+  CK   V     
Sbjct: 449 QPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTLIDFLCKSREVDVAIK 508

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +  +    +  T+ +L+K L  ++   +A  L  +++   C  D  T + L+  L 
Sbjct: 509 LFDEMRENNVPANVTTYNALLKGLQDKNMPEKAFELMDQMKEERCTPDYVTMDVLMEWLP 568

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEP 234
             G T   L  F E  +  G   +  +P
Sbjct: 569 EIGET-ERLKCFMEQRDEKGGAKLTMKP 595


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 169/395 (42%), Gaps = 68/395 (17%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGD+     ++A   +  ML+ R S P   ++N +   L+K +  D  + +   +    +
Sbjct: 24  EGDV-----DKAYITYHEMLDRRVS-PDAVTYNSIIAALSKAQAMDRAMEVLTVM----V 73

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+ +TYN +++ +C  G+      +  ++      PD VT+ SL+  LC   +  EA  
Sbjct: 74  MPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARK 133

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTG-----HTIVALNLFEEMANGNGEFGV-VCE-- 233
           +F  +   G + D+ TY TL++G    G     H ++AL +   M   +  F + +C   
Sbjct: 134 IFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYT 193

Query: 234 ---------------------PDAITYSTIIDGLCKEAGSAN-FLGFSCMASFSALNKMA 271
                                P+A+ Y T+IDGLCK     +  L F  M        + 
Sbjct: 194 KQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVV 253

Query: 272 FYFPLVRVQCL----------------------CLNFLCLIDGLCKISKLKIARELFQSL 309
            Y  L+   C                        + F  ++D LCK  ++  +++LF  L
Sbjct: 254 VYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLL 313

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G+ P+V+TY+ LI G C  G+MD          L   + S GL PD  TY+ LIN +
Sbjct: 314 GHIGVNPDVITYSTLIDGYCLAGKMD------GAMKLLTGMVSVGLKPDSVTYSTLINGY 367

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           CKI R+     +F  +  +   PD +T+  ++  L
Sbjct: 368 CKINRMEDALALFKEMESNGVNPDIITYNIILHGL 402



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 142/282 (50%), Gaps = 30/282 (10%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K +  D V+ +F ++   GL P+   Y  +I+  CK+GR+    +   +++
Sbjct: 185 FNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMI 244

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
               TP+ V +TSLI  LC   +  +A  L  ++   G   ++  +NT+++ LC+ G  I
Sbjct: 245 DKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVI 304

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC---KEAGSANFLGFSCMASFSALNK 269
            +  LF+ +    G  GV   PD ITYST+IDG C   K  G+   L  + M S      
Sbjct: 305 ESKKLFDLL----GHIGV--NPDVITYSTLIDGYCLAGKMDGAMKLL--TGMVS------ 350

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                  V ++   + +  LI+G CKI++++ A  LF+ +   G+ P+++TYNI++ GL 
Sbjct: 351 -------VGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLF 403

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
                  T+       L+ R+  +G   +L TYNI++  F K
Sbjct: 404 ------RTRRTAAAKELYARITESGTQLELSTYNIILMDFAK 439



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 147/337 (43%), Gaps = 39/337 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+N +   L K    D     +  +    + PD  TYN +I    K   +     V
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     P+  T+ S++   C+  +  +A  +F K+   G E DV TYN+L++ LC+
Sbjct: 69  LTVMV----MPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCK 124

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  +F+ M           +PD  TY T++ G   +           +   + +
Sbjct: 125 NGKCTEARKIFDSMVKRG------LKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGM 178

Query: 268 --------------------NKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARE 304
                               +++   F  +R Q L    +N+  +IDGLCK+ +L  A  
Sbjct: 179 QLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAML 238

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
            F+ +   GL PNVV Y  LI  LC   + ++ +      L+F+ L+  G+ P++  +N 
Sbjct: 239 NFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEE-----LIFEILDQ-GINPNIVFFNT 292

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +++  CK GRV     +F  +      PD +T+++LI
Sbjct: 293 ILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLI 329



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 128/282 (45%), Gaps = 28/282 (9%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD  +YN +I+   K G V   ++    +L    +PDAVT+ S+I  L     +  A  +
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
            T + +  C    FTYN++++G C +G +  A+ +F +M +         EPD +TY+++
Sbjct: 69  LTVMVMPNC----FTYNSIMHGYCSSGQSEKAIGIFRKMCSDG------IEPDVVTYNSL 118

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           +D LCK               F ++ K      +         +  L+ G      L   
Sbjct: 119 MDYLCKNGKCT-----EARKIFDSMVKRGLKPDIT-------TYGTLLHGYASKGALVEM 166

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            +L   + + G+  +   +NILI       ++DE      V L+F ++   GL P+   Y
Sbjct: 167 HDLLALMVQNGMQLDHHVFNILICAYTKQEKVDE------VVLVFSKMRQQGLTPNAVNY 220

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             +I+  CK+GR+    + F +++    TP+ V +TSLI  L
Sbjct: 221 RTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHAL 262



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 67/131 (51%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P +  FN +   L K         LF  L   G+ PD  TY+ LI+ +C  G++     +
Sbjct: 285 PNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKL 344

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     PD+VT+++LI   C  +R+ +A ALF ++   G   D+ TYN +++GL R
Sbjct: 345 LTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFR 404

Query: 208 TGHTIVALNLF 218
           T  T  A  L+
Sbjct: 405 TRRTAAAKELY 415


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 141/309 (45%), Gaps = 24/309 (7%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   + 
Sbjct: 145 FNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMX 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC E ++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 205 ASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+ +I GLCK+                  N +  
Sbjct: 265 LAMEIYKQMLSQS------LLPDLITYNXLIYGLCKK------------GDLKQANDLIX 306

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L  A E    +    +  + V Y  LI GLC +G
Sbjct: 307 EMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEG 366

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           +  + +       + + + S GL PD  TY ++IN FCK G V  G  +   +      P
Sbjct: 367 RXVDAEK------MLRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 420

Query: 393 DAVTFTSLI 401
             VT+  L+
Sbjct: 421 SVVTYNVLM 429



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 135/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 161 AXSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLI 219

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 220 NGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYN LI GLC+ G    A +L  EM+          +PD ITY+T+IDG CKE G+
Sbjct: 280 PDLITYNXLIYGLCKKGDLKQANDLIXEMSMKG------LKPDKITYTTLIDGCCKE-GN 332

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
            B        +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 333 LB-------TAFEHRXRMI----EENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSV 381

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 382 GLKPDAXTYTMIINEFCKKGDVWKGSK------LLKEMQRDGHVPSVVTYNVLMN 430



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 209 QPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAME 268

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L     PD +T+  LI  LC +  + +A  L  ++ + G + D  TY TLI+G C
Sbjct: 269 IYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCC 328

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G+   A      M   N         D + Y+ +I GLC+E    +            
Sbjct: 329 KEGNLBTAFEHRXRMIEEN------IRLDDVAYTALISGLCQEGRXVD------------ 370

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G +P+VVTYN+L+ 
Sbjct: 371 AEKMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430

Query: 327 G 327
           G
Sbjct: 431 G 431



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 56/124 (45%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++M+  +P   ++  L     K  + BT      R+    +  D   Y  LI+  C+ GR
Sbjct: 308 MSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGR 367

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +L  +L     PDA T+T +I + C +  + + + L  +++  G    V TYN 
Sbjct: 368 XVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNV 427

Query: 201 LING 204
           L+NG
Sbjct: 428 LMNG 431



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +           +F 
Sbjct: 113 VLEHLMKLKYFKLVWGFYKEILECGYPXSLYFFNILMHRFCKDGDI------RVAXSVFD 166

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G +  GF +   +  S   PD  T++ LI
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLI 219


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 140/310 (45%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 145 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI   C ES+  +A  LF ++ V G   +   + TLI+G C+ G   
Sbjct: 205 ASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 265 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDK- 317

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L  A E  + + +     + V Y  LI GLC +G
Sbjct: 318 -----------ITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEG 366

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 367 RSVDAEK-------MLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 419

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 420 PSVVTYNVLM 429



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 130/295 (44%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 161 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 219

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  +      +   +L     P+ V FT+LI   C   R+  A  ++ ++      
Sbjct: 220 NGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 279

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKG------LKPDKITYTTLIDGCCKEG-- 331

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M         +   + +  LI GLC   +   A ++ + +   
Sbjct: 332 ------DLDXAFEHXKRMI----QENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSV 381

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 382 GLKPDARTYTMIINEFCKKGDVWKGSK------LLKEMQRDGHVPSVVTYNVLMN 430



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 108/241 (44%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L     K    D    LF  + + GL P+   +  LI+  CK GRV     
Sbjct: 209 QPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAME 268

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L    +PD +T+ +LI  LC +  + +A  L  ++   G + D  TY TLI+G C
Sbjct: 269 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCC 328

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC E  S +            
Sbjct: 329 KEGDLDXAFEHXKRMIQENXRL------DXVXYTALISGLCXEGRSVD------------ 370

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G +P+VVTYN+L+ 
Sbjct: 371 AEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430

Query: 327 G 327
           G
Sbjct: 431 G 431



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQS------VFD 166

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 219


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 158/337 (46%), Gaps = 26/337 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           + S + N ++  F+ M++     P    FN L   +  +  ++   S F   N + +  D
Sbjct: 105 VQSQSLNLSISYFNEMVD-NGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNE-NKSKVVLD 162

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            Y++ ILI   C+ G +   F +L  +    F+P+ V +T+LI   C +  I +A  LF 
Sbjct: 163 VYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFF 222

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           ++   G   +  TY  LINGL + G       ++E+M     E GV   P+  TY+ +++
Sbjct: 223 EMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQ----EDGVF--PNLYTYNCVMN 276

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
            LCK+  + +        +F   ++M        V C  + +  LI GLC+  KL  A +
Sbjct: 277 QLCKDGRTKD--------AFQVFDEMRER----GVSCNIVTYNTLIGGLCREMKLNEANK 324

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +   +   G+ PN++TYN LI G C  G++ +         L + L S GL P L TYNI
Sbjct: 325 VVDQMKSDGINPNLITYNTLIDGFCGVGKLGK------ALSLCRDLKSRGLSPSLVTYNI 378

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L++ FC+ G  S    +   +      P  VT+T LI
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 143/313 (45%), Gaps = 24/313 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++ +L   L K         +++++   G+FP+ YTYN ++N  CK GR    F V   +
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM 294

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                + + VT+ +LI  LC E ++ EA  +  +++  G   ++ TYNTLI+G C  G  
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKL 354

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             AL+L  ++ +          P  +TY+ ++ G C++  +            S   KM 
Sbjct: 355 GKALSLCRDLKSRG------LSPSLVTYNILVSGFCRKGDT------------SGAAKMV 396

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
                  ++   + +  LID   +   ++ A +L  S+   GL+P+V TY++LI G C  
Sbjct: 397 KEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIK 456

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           GQM+E         LFK +      P+   YN +I  +CK G       +   +      
Sbjct: 457 GQMNEASR------LFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELA 510

Query: 392 PDAVTFTSLIKIL 404
           P+  ++  +I++L
Sbjct: 511 PNVASYRYMIEVL 523



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 110/257 (42%), Gaps = 19/257 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA  V D M       P + ++N L             LSL + L   GL P   TYNI
Sbjct: 320 NEANKVVDQM-KSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNI 378

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ FC+ G  S    ++  +      P  VT+T LI        + +A  L   +   G
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG 438

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV TY+ LI+G C  G    A  LF+ M   N      CEP+ + Y+T+I G CKE 
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN------CEPNEVIYNTMILGYCKEG 492

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                      +S+ AL K+        +     ++  +I+ LCK  K K A  L + + 
Sbjct: 493 -----------SSYRAL-KLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMI 540

Query: 311 RAGLMPNVVTYNILIRG 327
            +G+ P+    +++ R 
Sbjct: 541 DSGIDPSTSILSLISRA 557


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 161/373 (43%), Gaps = 70/373 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++       K + +D    +F+ +       +  TYN++I+  C+ G V   F  
Sbjct: 241 PDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGF 300

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++    +PDA T+ +L+  LC  SR+ EA AL  ++   G + ++  Y TL++G  +
Sbjct: 301 KEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMK 360

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSA------------ 253
            G T  A ++ +EM +         +P+ I Y  +I GLCK  + G A            
Sbjct: 361 EGKTAEAFDILKEMISAG------VQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGL 414

Query: 254 -------------NFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLC---------- 288
                        +F       +F  LN+M  +   P V    + +N LC          
Sbjct: 415 RPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGN 474

Query: 289 -------------------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                              LI G  K   + +A E  + + +A + P++  YN LI+GL 
Sbjct: 475 LLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLS 534

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
             G+M+E + Y      + ++   GL PD +TY+ LI+ +CK G +     +  ++L S 
Sbjct: 535 TVGRMEEAEEY------YAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSG 588

Query: 390 FTPDAVTFTSLIK 402
             P+A T+T L++
Sbjct: 589 LKPNADTYTDLLE 601



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 125/283 (44%), Gaps = 24/283 (8%)

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
            G+ PD YTY+  I   CK         V   + R     + VT+  +I  LC    + E
Sbjct: 237 AGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEE 296

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A     ++  +G   D FTY  L+NGLC+      A  L +EM+          +P+ + 
Sbjct: 297 AFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSG------LKPNIVV 350

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y T++DG  KE  +A         +F  L +M        VQ   + +  LI GLCKI +
Sbjct: 351 YGTLVDGFMKEGKTAE--------AFDILKEMIS----AGVQPNKIMYDNLIRGLCKIGQ 398

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           L  A +L + + + GL P+  TYN L++G       D        F L   + ++G+ P+
Sbjct: 399 LGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKD------GAFELLNEMRNSGILPN 452

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +Y+Y I+IN  C+ G       +   ++     P+A  +  LI
Sbjct: 453 VYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLI 495



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 154/350 (44%), Gaps = 37/350 (10%)

Query: 76  VFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
            F+ +  MR S   P V S+ I+   L +        +L + +   GL P+ + Y  LI 
Sbjct: 437 AFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLII 496

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
              K G +S     L ++ ++   PD   + SLIK L    R+ EA   + +++  G   
Sbjct: 497 GHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVP 556

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--- 250
           D FTY+ LI+G C+TG+   A  L  +M N         +P+A TY+ +++G  K     
Sbjct: 557 DEFTYSGLIHGYCKTGNLEKADQLLRQMLNSG------LKPNADTYTDLLEGYFKSNDYE 610

Query: 251 ----------GSA----NFLGFSCMASFSALNKMAFYFPL---VRVQCLCLN---FLCLI 290
                     GS     N +    + + S    M   F +   V    L  +   +  LI
Sbjct: 611 KVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLI 670

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
            GLCKI+ ++ A  L   + + GL P +V YN LI G C  G +   ++      +F  +
Sbjct: 671 SGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARN------VFDSI 724

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
            + GL P+  TY  LI+  CK G ++  F ++  +L     PDA  +  L
Sbjct: 725 LAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVL 774



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 144/347 (41%), Gaps = 47/347 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P +  +  L     K         + K +   G+ P++  Y+ LI   CK+G++     
Sbjct: 345 KPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASK 404

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +++    PD  T+  L++    +     A  L  ++R  G   +V++Y  +INGLC
Sbjct: 405 LLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLC 464

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G +  A NL EEM +         +P+A  Y+ +I G  KE      +  +C     A
Sbjct: 465 QNGESKEAGNLLEEMISEG------LKPNAFMYAPLIIGHSKEGN----ISLAC----EA 510

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L KM      V     C N   LI GL  + +++ A E +  + + GL+P+  TY+ LI 
Sbjct: 511 LEKMTKAN--VHPDLFCYN--SLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIH 566

Query: 327 GLCNDGQMDETKH-----------------------------YETVFLLFKRLNSTGLFP 357
           G C  G +++                                YE V  + + +  +G  P
Sbjct: 567 GYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKP 626

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           D + Y I+I    +   +   F++   +  +   PD   ++SLI  L
Sbjct: 627 DNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGL 673



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 123/284 (43%), Gaps = 32/284 (11%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P     ++L++ + K G V +   V+  +      P       L+KDL       +A  L
Sbjct: 171 PSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLR----ADAMEL 226

Query: 183 FTKLRVF----GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
             KL+ F    G   DV+TY+T I   C+      A  +FEEM   +      C  + +T
Sbjct: 227 LWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRD------CAMNEVT 280

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+ +I GLC+        GF        L+  AF +              L++GLCK S+
Sbjct: 281 YNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYG------------ALMNGLCKGSR 328

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           LK A+ L   +  +GL PN+V Y  L+ G   +G+  E       F + K + S G+ P+
Sbjct: 329 LKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAE------AFDILKEMISAGVQPN 382

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
              Y+ LI   CKIG++     +   ++     PD  T+  L++
Sbjct: 383 KIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQ 426



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 134/315 (42%), Gaps = 25/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   ++  L     K+  Y+ V S+ + +  +G  PD + Y I+I    +   +   F+
Sbjct: 590 KPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFM 649

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL  + ++   PD   ++SLI  LC  + + +A  L  ++   G E  +  YN LI+G C
Sbjct: 650 VLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFC 709

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R+G    A N+F+ +       G+V  P+ +TY+ +IDG CK     +            
Sbjct: 710 RSGDISRARNVFDSILAK----GLV--PNCVTYTALIDGNCKNGDITDAFDLYKEMLDRG 763

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +   AF + ++   C               + L+ A  L + +   G   NV  +N L+ 
Sbjct: 764 IAPDAFVYNVLATGC------------SDAADLEQALFLTEEMFNRGY-ANVSLFNTLVH 810

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C  G++ ET+       L   +    + P+  T   +++ F K G++     +F  + 
Sbjct: 811 GFCKRGKLQETEK------LLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQ 864

Query: 387 PSCFTPDAVTFTSLI 401
               +  A    SL+
Sbjct: 865 QKKASQSATDRFSLL 879


>gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 141/315 (44%), Gaps = 28/315 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S N     L      D  L+ +K +    + P+ YT N+++  FCK G++     V
Sbjct: 179 PTVESCNAYLSSLLDLHRVDIALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQV 238

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +     +P+  ++ +LI   C +  +  A  L   +R  G E +V T+N+LI+G C+
Sbjct: 239 FEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCK 298

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  +F EM   N        P+ ITY+T+I+G  +       +G S M      
Sbjct: 299 EGKLHEASKVFSEMKVLN------VAPNTITYNTLINGHSQ-------MGNSEMGR---- 341

Query: 268 NKMAFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                Y  + R  V+   L +  LI GLCK  K K A  + + L +  L+PN  T++ LI
Sbjct: 342 ---RLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALI 398

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C     D        F L+K +   G  P+  T+N+L++ FCK       F++   +
Sbjct: 399 SGQCIRNNSDR------AFQLYKSMVRIGCHPNEQTFNMLVSAFCKNEDFEGAFLVLMEM 452

Query: 386 LPSCFTPDAVTFTSL 400
              CFTP +   + +
Sbjct: 453 FERCFTPGSDVLSEI 467



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 46/101 (45%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  ++F+ L        + D    L+K +   G  P+  T+N+L++ FCK       F+V
Sbjct: 389 PNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSAFCKNEDFEGAFLV 448

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           L  +   CFTP +   + +   LC   +   A  L ++L+ 
Sbjct: 449 LMEMFERCFTPGSDVLSEIYHGLCCCGKEHLAMKLSSELKA 489


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 146/317 (46%), Gaps = 28/317 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS---HG 144
           P   +FNI+   L KT        + K +   GL P   TYN LI+ + K GR     H 
Sbjct: 186 PDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHV 245

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
            ++L  + ++  +P+ VTF  LI   C ES I  A  +F ++R  G   ++ TY +L++G
Sbjct: 246 DMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSG 305

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           LCR G    ++ L EEM     E G+   P   T +++++G CK+       G+      
Sbjct: 306 LCREGKVEDSMKLVEEME----ELGLATLP---TLNSVLNGFCKKGMMVEAEGW------ 352

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             ++ MA       ++   + +  LIDG  ++ K+K A     ++   G+ P+V TYN L
Sbjct: 353 --VDGMAQKG----MKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCL 406

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I G         +  + +V  L   +  TG+  DL TYN+LI   C  G V     +   
Sbjct: 407 ITGFTT------STDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDE 460

Query: 385 ILPSCFTPDAVTFTSLI 401
           ++     P   T+ ++I
Sbjct: 461 MVEVGLEPKHRTYNAII 477



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 131/295 (44%), Gaps = 28/295 (9%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P  ++ N L+    +  RV          LR   +PD  TF  +I  LC   ++ +A  +
Sbjct: 151 PSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKAGDV 210

Query: 183 FTKLRVFGCELDVFTYNTLING---LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
              +R +G    V TYNTLI+G     R G       L +EM     + G+   P+ +T+
Sbjct: 211 AKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEM----NQAGI--SPNVVTF 264

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           + +I+G CKE+        +  A+     +M  +     +    + +  L+ GLC+  K+
Sbjct: 265 NVLINGYCKES--------NITAAIKVFEEMRQHG----IPANMVTYTSLVSGLCREGKV 312

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
           + + +L + +   GL   + T N ++ G C  G M E + +         +   G+ P++
Sbjct: 313 EDSMKLVEEMEELGL-ATLPTLNSVLNGFCKKGMMVEAEGW------VDGMAQKGMKPNV 365

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
            TYN LI+ + ++G++       G +     +PD  T+  LI     ++ +R V+
Sbjct: 366 VTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVS 420



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 130/317 (41%), Gaps = 25/317 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +N     P V +FN+L     K  +    + +F+ +   G+  +  TY  L++  C+ G+
Sbjct: 252 MNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGK 311

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V     ++   +         T  S++   C +  ++EA      +   G + +V TYNT
Sbjct: 312 VEDSMKLVEE-MEELGLATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNT 370

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+G  R G       + E  A      G    PD  TY+ +I             GF+ 
Sbjct: 371 LIDGYQRLG------KMKEATAAKGAMAGKGISPDVKTYNCLIT------------GFTT 412

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
              + +++ +        V+   + +  LI  LC   +++ A +L   +   GL P   T
Sbjct: 413 STDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRT 472

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN +I G C  G   + K    + +   R+       ++ T N+ +  FCK+G++    V
Sbjct: 473 YNAIINGFCEKG---DAKGAHDIRI---RMEKCKKRANVVTCNVFLKYFCKMGKMDEANV 526

Query: 381 IFGRILPSCFTPDAVTF 397
           +   +L     P+ +T+
Sbjct: 527 VLNEMLEKGLVPNRITY 543



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 18/221 (8%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G+ P+  TYN LI+ + ++G++       G +     +PD  T+  LI      +     
Sbjct: 360 GMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSV 419

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
           + L  +++  G + D+ TYN LI  LC  G    A+ L +EM     E G+  EP   TY
Sbjct: 420 SGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMV----EVGL--EPKHRTY 473

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           + II+G C E G A              + +       + +   +     +   CK+ K+
Sbjct: 474 NAIINGFC-EKGDAK-----------GAHDIRIRMEKCKKRANVVTCNVFLKYFCKMGKM 521

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
             A  +   +   GL+PN +TY I+  G+   G + + + Y
Sbjct: 522 DEANVVLNEMLEKGLVPNRITYEIINSGMIEKGYVPDIRGY 562



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 72/176 (40%), Gaps = 6/176 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L      +  + +V  L   +  TG+  D  TYN+LI   C  G V     +
Sbjct: 398 PDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKL 457

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     P   T+ ++I   C +     A  +  ++       +V T N  +   C+
Sbjct: 458 LDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVFLKYFCK 517

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
            G    A  +  EM     E G+V  P+ ITY  I  G+ ++    +  G++   S
Sbjct: 518 MGKMDEANVVLNEML----EKGLV--PNRITYEIINSGMIEKGYVPDIRGYAADVS 567


>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 151/312 (48%), Gaps = 40/312 (12%)

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
           +  CL +      V+  FK    +G+F D   YNI+++  CK+G+V     +L  +    
Sbjct: 373 ILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRR 432

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
            + D V +T+LI   C + ++++A  +F +++  G E D+ TYN L+ G  R G    AL
Sbjct: 433 MSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEAL 492

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-----KEAGS-ANFLGFSCMASFSALNK 269
            L + +    G  G+  +P++ T++ II+GLC     KEA +  N L   C+ ++SA   
Sbjct: 493 ELLDCI----GTQGL--KPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLENYSA--- 543

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                              ++DG CK +  + A ELF  L + G++    +   L+  LC
Sbjct: 544 -------------------MVDGYCKANFTRKAYELFSRLSKQGILVKKKSCFKLLSSLC 584

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
            +G+      Y+   +L +R+ +  + P+   Y  LI  FC+ G +    ++F  ++   
Sbjct: 585 MEGE------YDKALILLERMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERG 638

Query: 390 FTPDAVTFTSLI 401
            TPD +T+T +I
Sbjct: 639 ITPDVITYTMMI 650



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 141/343 (41%), Gaps = 41/343 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S N L   L +    D  +++++ L   GL P+ YTY I I   C+ G       V
Sbjct: 190 PHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDV 249

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +  +   P+AVT ++ I+ LC+  R          LR     +D F Y  +I G C 
Sbjct: 250 FREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCS 309

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A ++F +M N     G+   PD   Y  +I   CK   + N L    + +    
Sbjct: 310 EMKLKEAEDVFIDMVNE----GIA--PDGYIYGALIHAYCK---AGNLLQAVALHNDMVS 360

Query: 268 NKMAFYFPLVR--VQCLC------------------------LNFLCLIDGLCKISKLKI 301
           N +     +V   +QCLC                        + +  ++D LCK+ K++ 
Sbjct: 361 NGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEE 420

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A EL   +    +  +VV Y  LI G C  G++ + K+      +F+ +   G+ PD+ T
Sbjct: 421 AVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKN------MFEEMKERGIEPDIVT 474

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           YNIL+  F + G       +   I      P++ T   +I+ L
Sbjct: 475 YNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGL 517



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 140/333 (42%), Gaps = 37/333 (11%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P + ++NIL G  ++       L L   +   GL P+  T+N +I   C  G+
Sbjct: 463 MKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGK 522

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V      L  +   C       +++++   C  +   +A  LF++L   G  +   +   
Sbjct: 523 VKEAEAFLNTLEDKCLE----NYSAMVDGYCKANFTRKAYELFSRLSKQGILVKKKSCFK 578

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           L++ LC  G    AL L E M        +  EP+ I Y  +I   C++           
Sbjct: 579 LLSSLCMEGEYDKALILLERM------LALDVEPNQIMYGKLIGAFCRDGD--------- 623

Query: 261 MASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
                 + +    F ++  + +    + +  +I+G C+++ L+ AR++F  +   G+ P+
Sbjct: 624 ------MKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPD 677

Query: 318 VVTYNILIRG-------LCNDGQMDETKHYETVFL--LFKRLNSTGLFPDLYTYNILINC 368
           V+TY +++ G       +    Q  +    E +     +  +   G+ PD+  Y +LI+ 
Sbjct: 678 VITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTVLIDS 737

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            CK   +     ++  ++     PD VT+T+L+
Sbjct: 738 HCKTNNLQDAINLYDEMIARGLQPDIVTYTALL 770



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 124/302 (41%), Gaps = 47/302 (15%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           ++L+  + ++G        L +  R  F P  ++   L+  L    +I  A A++  L+ 
Sbjct: 161 DMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKR 220

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   + +TY   I  LCR G+   A+++F EM     E GV   P+A+T ST I+GLC 
Sbjct: 221 LGLNPNDYTYGIFIKALCRKGNFEEAVDVFREME----EAGV--NPNAVTCSTYIEGLCS 274

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
              S   LG+  + +  A N     +P+         +  +I G C   KLK A ++F  
Sbjct: 275 HKRSD--LGYEALRALRAAN-----WPID-----TFAYTAVIRGFCSEMKLKEAEDVFID 322

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMD-----------------------------ETKH 339
           +   G+ P+   Y  LI   C  G +                              E   
Sbjct: 323 MVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMGM 382

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
              V   FK    +G+F D   YNI+++  CK+G+V     +   +     + D V +T+
Sbjct: 383 ASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTT 442

Query: 400 LI 401
           LI
Sbjct: 443 LI 444



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 120/271 (44%), Gaps = 19/271 (7%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
            LF RL+  G+   + +   L++  C  G      ++L R+L     P+ + +  LI   
Sbjct: 559 ELFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQIMYGKLIGAF 618

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C +  +  A  +F  L   G   DV TY  +ING CR      A ++F +M     E G+
Sbjct: 619 CRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMK----ERGI 674

Query: 231 VCEPDAITYSTIIDGLCK-EAGSANFLGFSCMASFSALNKMAFYFPL----VRVQCLCLN 285
             +PD ITY+ ++DG  K     A  L FS  +    ++   F+  +    ++   +C  
Sbjct: 675 --KPDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVC-- 730

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  LID  CK + L+ A  L+  +   GL P++VTY  L+   C+ G MD          
Sbjct: 731 YTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGDMDRA------IT 784

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           L   ++  G+ PD    ++L     K  +V 
Sbjct: 785 LVNEMSFKGIEPDSRAMSVLHRGILKARKVQ 815



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 87/226 (38%), Gaps = 33/226 (14%)

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A + FT+L+  G + +V TY  LI  LCR        +L  E+  G+ E           
Sbjct: 80  AWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIV-GSKE----------- 127

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
                          + LGF   A F  L +            L L    L+    ++  
Sbjct: 128 ---------------SVLGFDITALFDVLREGGGEVEGEHSSVLILVLDMLVKAYVRVGM 172

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
              A +      R G +P++++ N L+  L   G++D          +++ L   GL P+
Sbjct: 173 FDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKID------MAVAIYRHLKRLGLNPN 226

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            YTY I I   C+ G       +F  +  +   P+AVT ++ I+ L
Sbjct: 227 DYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGL 272


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 167/360 (46%), Gaps = 40/360 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + D M  +    P   +FN+L   L K   +  V  L   + L G  P+  TYN 
Sbjct: 233 DEAVSLLDEM-QIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNT 291

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C  G++     +L R++ S   P+ VT+ ++I  L  + R ++ A +   +   G
Sbjct: 292 LIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERG 351

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEE-MANGNGEFGVVCEPDAITYSTIIDGLCKE 249
             ++ + Y+ L++GL + G +  A+ LF+E M  G       C+ + + YS ++DGLC++
Sbjct: 352 YIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKG-------CKLNTVLYSALVDGLCRD 404

Query: 250 AGSANFLGF-------SCMA---SFSALNKMAF-----------YFPLVRVQCLCLNFLC 288
                 +          C     +FS+L K  F           +  + ++ C   N +C
Sbjct: 405 RKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINC-AENEVC 463

Query: 289 ---LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET-KHYETVF 344
              LI GLCK  K+  A  ++  +   G  P+VV Y+ +I+GLC+ G ++E  K Y  + 
Sbjct: 464 YSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEML 523

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L          PD+ TYNIL N  CK   +S    +   +L     PD VT    +++L
Sbjct: 524 CL-----EPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRML 578



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 164/397 (41%), Gaps = 75/397 (18%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL---NLTGLFPDRY 126
           PN+A+ +F  M      +P V SFN +   + +   +D  L  +  +       + P+  
Sbjct: 123 PNKAIELFYRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVL 182

Query: 127 TYNILINCFCKMGRVSHGFVVLGRI-LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           ++N++I   CK+G V +   +   + +R C  PDA T+ +L+  LC   RI EA +L  +
Sbjct: 183 SFNLIIKSMCKLGLVDNAIELFREMPVRKC-VPDAYTYCTLMDGLCKVDRIDEAVSLLDE 241

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +++ GC     T+N LINGLC+ G       L + M      F   C P+ +TY+T+I G
Sbjct: 242 MQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNM------FLKGCVPNEVTYNTLIHG 295

Query: 246 LCKEAGSANFLGF-------SCMAS-------FSALNKMAFYFPLVRVQCLCLN------ 285
           LC +      L          C+ +        + L K        RV  L         
Sbjct: 296 LCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVN 355

Query: 286 ---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
              +  L+ GL K  K + A  LF+     G   N V Y+ L+ GLC D + DE      
Sbjct: 356 EYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMK--- 412

Query: 343 VFLLFKRLNSTGLFPDLYT-----------------------------------YNILIN 367
              +   +   G  P+ +T                                   Y++LI+
Sbjct: 413 ---ILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIH 469

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             CK G+V    +++ ++L +   PD V ++S+I+ L
Sbjct: 470 GLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGL 506


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 147/325 (45%), Gaps = 27/325 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL V D ML  R   P V ++NIL     K + Y   + L   +   G  P+  TYN+L
Sbjct: 185 DALSVLDDML-CRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVL 243

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  C  G V     +L  +      P  V + +++K LC+  R  +A  L T++    C
Sbjct: 244 MDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENC 303

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T+N +I  LCR G    A+ L E+M+         C  + +TY+ II+GLC++  
Sbjct: 304 PPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHG------CTANIVTYNAIINGLCEQRN 357

Query: 252 SANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
               +G  S M S+     +  Y  L++             GLC  ++   A EL  ++ 
Sbjct: 358 VDGAMGLLSKMKSYGCKPDIVTYNTLLK-------------GLCSAAQWVDAEELMDNMT 404

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           + G +P+ VT+N LI  LC  G M +         +FK++   G  P+  TY+ +I+   
Sbjct: 405 QNGCLPDNVTFNTLIGFLCQKGLMVD------AIEVFKQMPDKGCTPNSITYSTIISGLA 458

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAV 395
           K  ++     +F  +    F PD +
Sbjct: 459 KATKLDQALELFNEMGHKGFNPDKI 483



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 146/330 (44%), Gaps = 26/330 (7%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P +P   ++N L   L +       LS+   +   G  PD  TYNIL+   CK GR    
Sbjct: 162 PVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCK-GRGYRQ 220

Query: 145 FVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
            + L  ++R+   TP+ VT+  L+  +C E  + +A  L   L   GC+     YNT++ 
Sbjct: 221 AMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLK 280

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GLC       A  L  EM   N      C P+  T++ +I  LC++             +
Sbjct: 281 GLCSAERWGDADELVTEMLREN------CPPNEATFNVVIYSLCRKG--------LLQQA 326

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
              L KM+ +     +    + +  +I+GLC+   +  A  L   +   G  P++VTYN 
Sbjct: 327 IQLLEKMSKHGCTANI----VTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNT 382

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++GLC+  Q  + +       L   +   G  PD  T+N LI   C+ G +     +F 
Sbjct: 383 LLKGLCSAAQWVDAEE------LMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFK 436

Query: 384 RILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           ++     TP+++T++++I  L   +   Q 
Sbjct: 437 QMPDKGCTPNSITYSTIISGLAKATKLDQA 466



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 161/356 (45%), Gaps = 37/356 (10%)

Query: 61  GEGDITSITPNEALCVFDYMLNMRPS---RPPVTSFNILFGCLAKTKHYDTVLSLFKRLN 117
           GEGD+     ++AL     +L   PS   +P   ++N +   L   + +     L   + 
Sbjct: 249 GEGDV-----DDAL----ELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEML 299

Query: 118 LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177
                P+  T+N++I   C+ G +     +L ++ +   T + VT+ ++I  LC +  + 
Sbjct: 300 RENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVD 359

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237
            A  L +K++ +GC+ D+ TYNTL+ GLC     + A  L + M   NG     C PD +
Sbjct: 360 GAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQ-NG-----CLPDNV 413

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           T++T+I  LC++      L    +  F  +       P        + +  +I GL K +
Sbjct: 414 TFNTLIGFLCQKG-----LMVDAIEVFKQM-------PDKGCTPNSITYSTIISGLAKAT 461

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           KL  A ELF  +   G  P+ + Y +L   L +D  ++E    +TV    ++L  +G+ P
Sbjct: 462 KLDQALELFNEMGHKGFNPDKI-YQLLAECLNDDDTIEEA--IQTV----RKLQDSGISP 514

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
               YN ++   C+ G+      I   ++ S   PD +T+  LI+ L    +  + 
Sbjct: 515 HTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEA 570



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 127/284 (44%), Gaps = 37/284 (13%)

Query: 83  MRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           +R + PP   +FN++   L +       + L ++++  G   +  TYN +IN  C+   V
Sbjct: 299 LRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNV 358

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                +L ++      PD VT+ +L+K LC+ ++ ++A  L   +   GC  D  T+NTL
Sbjct: 359 DGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTL 418

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           I  LC+ G  + A+ +F++M +        C P++ITYSTII GL K       L     
Sbjct: 419 IGFLCQKGLMVDAIEVFKQMPDKG------CTPNSITYSTIISGLAKATKLDQALELFNE 472

Query: 262 ASFSALNKMAFYFPLVRVQCLCLN--------------------------FLCLIDGLCK 295
                 N    Y  L      CLN                          +  ++ GLC+
Sbjct: 473 MGHKGFNPDKIYQLLAE----CLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCR 528

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
             K + A ++   +  +G MP+ +TY ILI GL  +G ++E + 
Sbjct: 529 NGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARE 572



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 44/250 (17%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++N +   L + ++ D  + L  ++   G  PD  TYN L+   C   +      ++ 
Sbjct: 342 IVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMD 401

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            + ++   PD VTF +LI  LC +  +++A  +F ++   GC  +  TY+T+I+GL +  
Sbjct: 402 NMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKAT 461

Query: 210 HTIVALNLFEEMA----NGNGEFGVVCE------------------------PDAITYST 241
               AL LF EM     N +  + ++ E                        P  + Y+ 
Sbjct: 462 KLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNA 521

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKL 299
           I+ GLC+  G   F          A++ MA+   +V   C+   L ++ LI+GL     L
Sbjct: 522 ILLGLCRN-GKTEF----------AIDIMAY---MVSSGCMPDDLTYVILIEGLAYEGYL 567

Query: 300 KIARELFQSL 309
             AREL   L
Sbjct: 568 NEARELLIKL 577



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 99/256 (38%), Gaps = 30/256 (11%)

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           PDA     L++DLC   R  +A  +       G    V  Y  L +G CR G    A  +
Sbjct: 101 PDAALANRLVRDLCRRGRPDDAERVVG---ACGPAATVVAYGALTDGYCRAGRLGDARRV 157

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
                      G+  +P+A TY+ +I  LC+     + L        S L+ M       
Sbjct: 158 V---------GGMPVQPNAYTYNPLIHTLCERGQVRDAL--------SVLDDMLCRGCAP 200

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            V    + +  L++  CK    + A EL   +   G  PN VTYN+L+ G+C +G +D+ 
Sbjct: 201 DV----VTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDD- 255

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   L + L S G  P    YN ++   C   R      +   +L     P+  TF
Sbjct: 256 -----ALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATF 310

Query: 398 TSLIKILEINSFFRQV 413
             +I  L      +Q 
Sbjct: 311 NVVIYSLCRKGLLQQA 326



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 2/147 (1%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ VF  M + +   P   +++ +   LAK    D  L LF  +   G  PD+  Y +L
Sbjct: 430 DAIEVFKQMPD-KGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDK-IYQLL 487

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
             C      +      + ++  S  +P  V + +++  LC   +   A  +   +   GC
Sbjct: 488 AECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGC 547

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLF 218
             D  TY  LI GL   G+   A  L 
Sbjct: 548 MPDDLTYVILIEGLAYEGYLNEARELL 574



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 5/114 (4%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           P   + +L  CL      +  +   ++L  +G+ P    YN ++   C+ G+      ++
Sbjct: 480 PDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIM 539

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
             ++ S   PD +T+  LI+ L  E  + EA  L  KL    C  DV   N+LI
Sbjct: 540 AYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL----CSRDVLV-NSLI 588


>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
 gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
          Length = 319

 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 138/302 (45%), Gaps = 42/302 (13%)

Query: 121 LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180
           + PD  T+NIL++  CK G++S    ++  ++     P+ VT++SL+     ++R+ EA 
Sbjct: 6   IMPDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEAR 65

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM---------ANGNGEFGVV 231
            +F  +   GC  DV +YN LING C+      A  +F+EM         A  N   G  
Sbjct: 66  KVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGGF 125

Query: 232 ---------------CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
                          C PD +TYS  + GL K+      L        + LN     + +
Sbjct: 126 WKQKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPDLVIYNI 185

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
                       LID +CK  KL+ ARELF  L   GL+P+V ++  +I GLC +G +DE
Sbjct: 186 ------------LIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDE 233

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                  +  F+++   G  PD  +YN+++  F +    S    +F  +    F+ DA+T
Sbjct: 234 ------AYKAFRQMERDGCPPDCCSYNVIVRGFLQNNGASRAEQLFQEMFDRGFSADALT 287

Query: 397 FT 398
            T
Sbjct: 288 RT 289



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 12/183 (6%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD M + R   P   ++N L G   K K     + LFK ++  G  PD  TY+I
Sbjct: 97  DEAKQIFDEM-SFRGLIPNTATYNTLLGGFWKQK-----IQLFKDMHAQGCSPDLVTYSI 150

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            ++   K G +     +   +  +   PD V +  LI  +C   ++ +A  LF KL V G
Sbjct: 151 FLHGLSKQGYLDQALELFREMQNNYLNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKG 210

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV ++ ++I+GLCR G    A   F +M          C PD  +Y+ I+ G  +  
Sbjct: 211 LLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDG------CPPDCCSYNVIVRGFLQNN 264

Query: 251 GSA 253
           G++
Sbjct: 265 GAS 267


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 88/294 (29%), Positives = 140/294 (47%), Gaps = 29/294 (9%)

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
           +G+ P+ +T+N +I   C  G+V    +++G I      PD  T+TSLI   C    +  
Sbjct: 196 SGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDL 255

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A  +F ++   GC+ +  TY+ LINGLC  G    A+++ EEM +         EP    
Sbjct: 256 AFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKG------IEPTVHA 309

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+  I  LC         G SC A    L KM        VQ     +  LI GL +  K
Sbjct: 310 YTIPIVSLCDA-------GRSCEA-VKLLGKMKKRGCGPNVQ----TYTALISGLSRDGK 357

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
            ++A  ++  +   GL+P  VTY+ LI  L  +G+      +ET   +F+ + S    P+
Sbjct: 358 FEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGR------FETALTIFEWMLSHDSLPN 411

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
             TYN++I  FC IG +     IF ++L +  +P+ +T+  +I I     +F+Q
Sbjct: 412 TETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHI-----YFKQ 460



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 137/301 (45%), Gaps = 26/301 (8%)

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K  + D    +F R+   G  P+  TY+ LIN  C  GR+     +L  ++     P   
Sbjct: 249 KNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVH 308

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            +T  I  LC   R  EA  L  K++  GC  +V TY  LI+GL R G   VA+ ++ +M
Sbjct: 309 AYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKM 368

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQ 280
                  G+V  P A+TYS +I+ L  E      L  F  M S  +L     Y  +++  
Sbjct: 369 LAD----GLV--PTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIK-- 420

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
                      G C I  ++ A  +F  + +AG  PNV+TYNI+I      G M+     
Sbjct: 421 -----------GFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMN----- 464

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                L + +   GL  D +TY  LI+ F + G++   F +F  ++    +P+ VT+ ++
Sbjct: 465 -NAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAI 523

Query: 401 I 401
           I
Sbjct: 524 I 524



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 147/319 (46%), Gaps = 32/319 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++ L   L     ++T L++F+ +      P+  TYN++I  FC +G +     +
Sbjct: 375 PTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAI 434

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++L++  +P+ +T+  +I     +  +  A  L   ++  G +LD +TY  LI+G  R
Sbjct: 435 FDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSR 494

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A +LF EM     E G+   P+ +TY+ II+G    A                 
Sbjct: 495 GGKLEHAFSLFNEMV----EHGI--SPNVVTYNAIINGYLTVA--------------KVD 534

Query: 268 NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           + +A ++ +V    +     +  +I G  K +++  A      + + GL+PNV+TY   I
Sbjct: 535 DALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFI 594

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC +G+          F +F  +     FP+L TY+ LI+  C+ G+         R+
Sbjct: 595 DGLCKNGRT------SLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDA----ERL 644

Query: 386 LPSCFTPDAVTFTSLIKIL 404
           L     P+  T+T+L++ L
Sbjct: 645 LDDGCEPNVDTYTTLVRGL 663



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 156/369 (42%), Gaps = 70/369 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  +FD ML   PS P V ++NI+     K  + +  + L + +   GL  D +TY  
Sbjct: 429 QKATAIFDQMLKAGPS-PNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYAN 487

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL---- 186
           LI+ F + G++ H F +   ++    +P+ VT+ ++I      +++ +A ALF K+    
Sbjct: 488 LISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESG 547

Query: 187 -------------------RVFGCE------------LDVFTYNTLINGLCRTGHTIVAL 215
                              R+   E             +V TY + I+GLC+ G T +A 
Sbjct: 548 NVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAF 607

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN---FLGFSCMASFSALNKMAF 272
            +F EM   +        P+  TYS++IDGLC+E  + +    L   C  +         
Sbjct: 608 KIFHEMKKRD------YFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPNVDT------ 655

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
           Y  LVR             GLC   +   A +L +S+ + GL P+   Y  L+ G C + 
Sbjct: 656 YTTLVR-------------GLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNL 702

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           ++      E+   +F  + +TG  P L  Y  LI   CK         +F  +L   +  
Sbjct: 703 EV------ESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNS 756

Query: 393 DAVTFTSLI 401
           D V +T L+
Sbjct: 757 DEVVWTVLL 765



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 147/321 (45%), Gaps = 24/321 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R   P V ++  L   L++   ++  + ++ ++   GL P   TY+ LIN     GR
Sbjct: 333 MKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGR 392

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +   +L     P+  T+  +IK  C+   I +A A+F ++   G   +V TYN 
Sbjct: 393 FETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNI 452

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           +I+   + G+   A+ L  EM  GNG      + D  TY+ +I G  +        G   
Sbjct: 453 IIHIYFKQGYMNNAMRLL-EMMKGNG-----LKLDTWTYANLISGFSR--------GGKL 498

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             +FS  N+M  +     +    + +  +I+G   ++K+  A  LF  +  +G +P+  T
Sbjct: 499 EHAFSLFNEMVEH----GISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGT 554

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YN++I G     ++ E +++        ++   GL P++ TY   I+  CK GR S  F 
Sbjct: 555 YNMMISGFSKTNRISEAENF------CGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFK 608

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           IF  +    + P+  T++SLI
Sbjct: 609 IFHEMKKRDYFPNLCTYSSLI 629



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 149/352 (42%), Gaps = 36/352 (10%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  +FD M+      P   +++ L   L      +  + + + +   G+ P  + Y I I
Sbjct: 256 AFEMFDRMVK-DGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPI 314

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              C  GR      +LG++ +    P+  T+T+LI  L  + +   A  ++ K+   G  
Sbjct: 315 VSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLV 374

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----- 247
               TY+ LIN L   G    AL +FE M + +        P+  TY+ II G C     
Sbjct: 375 PTAVTYSALINQLYVEGRFETALTIFEWMLSHDS------LPNTETYNVIIKGFCSIGYI 428

Query: 248 -----------KEAGSANFLGFSCMASF----SALNKMAFYFPLVRVQCLCLN---FLCL 289
                      K   S N + ++ +         +N       +++   L L+   +  L
Sbjct: 429 QKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANL 488

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           I G  +  KL+ A  LF  +   G+ PNVVTYN +I G     ++D+         LF +
Sbjct: 489 ISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDD------ALALFWK 542

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +  +G  P   TYN++I+ F K  R+S      G+++     P+ +T+TS I
Sbjct: 543 MVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFI 594



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 128/288 (44%), Gaps = 36/288 (12%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
            A  +F+ M+    S P V ++N +          D  L+LF ++  +G  P   TYN++
Sbjct: 500 HAFSLFNEMVEHGIS-PNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMM 558

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ F K  R+S      G++++    P+ +T+TS I  LC   R   A  +F +++    
Sbjct: 559 ISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDY 618

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             ++ TY++LI+GLC+ G    A  L ++           CEP+  TY+T++ GLC +  
Sbjct: 619 FPNLCTYSSLIDGLCQEGQAEDAERLLDDG----------CEPNVDTYTTLVRGLCGKGR 668

Query: 252 --SANFLGFSCMASFSALNKMAFYFPLVRVQCLCL----------------------NFL 287
              A+ L    M           Y  L+  QC  L                      ++ 
Sbjct: 669 CYEADQL-VESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYK 727

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
            LI  LCK +  + A+ +FQ++ +     + V + +L+ GL  +G+ D
Sbjct: 728 ALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETD 775



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 94/242 (38%), Gaps = 24/242 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++      L K         +F  +     FP+  TY+ LI+  C+ G+       
Sbjct: 585 PNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDA--- 641

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R+L     P+  T+T+L++ LC + R  EA  L   ++  G +     Y  L+ G C+
Sbjct: 642 -ERLLDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCK 700

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF-LGFSCMASFSA 266
                 AL +F+ M           +P    Y  +I  LCK    ANF     CM  F  
Sbjct: 701 NLEVESALKIFDSMVTTG------FQPCLSDYKALICALCK----ANFRQKAQCM--FQT 748

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           + K  +    V        +  L+DGL K  +  ++ EL   +       N  T  +L R
Sbjct: 749 MLKKHWNSDEVV-------WTVLLDGLLKEGETDLSLELLHVMESRNCTLNFQTRVMLAR 801

Query: 327 GL 328
            L
Sbjct: 802 EL 803


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 151/305 (49%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G ++ GF +   + 
Sbjct: 139 FNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMH 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+ G+ N        +   +++M+ 
Sbjct: 259 LAMEVYKQMLSQS------LLPDLITYNTLIYGLCKK-GALN-------QAHDLMDEMS- 303

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 304 ---MKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 361 RSVDAEK-------MMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHA 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 136/304 (44%), Gaps = 28/304 (9%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L K K+++ V + ++ +   G     Y +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LVKLKYFNLVWAFYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPS 170

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V++ +L+        + E   L + +   G + DV+TY+ LINGLC+      A  LFE
Sbjct: 171 VVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFE 230

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM       G+V  P+ +T++T+IDG CK  G  +               M  Y  ++  
Sbjct: 231 EMLVK----GLV--PNGVTFTTLIDGHCKN-GRVDL-------------AMEVYKQMLSQ 270

Query: 280 QCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
             L   + +  LI GLCK   L  A +L   +   GL P+ +TY  LI G C +G +D  
Sbjct: 271 SLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLD-- 328

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
               T F   KR+    +  D   Y  LI+  C+ GR      +   +L     PD  T+
Sbjct: 329 ----TAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTY 384

Query: 398 TSLI 401
           T +I
Sbjct: 385 TMII 388



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/300 (28%), Positives = 133/300 (44%), Gaps = 30/300 (10%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGDI       A  VFD  +     RP V S+N L     +    +    L   ++ +G+
Sbjct: 149 EGDI-----RLAQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGV 202

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD YTY++LIN  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           ++ ++       D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T
Sbjct: 263 VYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKG------LKPDKITYTT 316

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +IDG CKE             +F    +M        ++   + +  LI GLC+  +   
Sbjct: 317 LIDGCCKEG--------DLDTAFEHRKRMI----QENIRLDDVAYTALISGLCQEGRSVD 364

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A ++ + +   GL P+  TY ++I   C  G + +         L K +   G  P + T
Sbjct: 365 AEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSK------LLKEMQRDGHAPSVVT 418



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 29/142 (20%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK---------- 338
           +++ L K+    +    ++ +   G   ++  +NIL+   C +G +   +          
Sbjct: 107 MLEHLVKLKYFNLVWAFYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWG 166

Query: 339 ------HYETV-------------FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                  Y T+             F L   ++++G+ PD+YTY++LIN  CK  ++    
Sbjct: 167 LRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  +L     P+ VTFT+LI
Sbjct: 227 ELFEEMLVKGLVPNGVTFTTLI 248


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 147/317 (46%), Gaps = 28/317 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  + I    L +    +    +F+ +   G+ P+ YTY+ +I+ +CK G V   + 
Sbjct: 231 KPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYG 290

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   IL +   P+ V F +L+   C    ++ A +LF  +  FG + +++ YN LI+G C
Sbjct: 291 LYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHC 350

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE--AGSANFLGFSCMASF 264
           ++G+ + A+ L  EM + N        PD  TY+ +I+GLC E     AN L F  M + 
Sbjct: 351 KSGNMLEAVGLLSEMESLN------LSPDVFTYTILINGLCIEDQVAEANRL-FQKMKNE 403

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
                 A Y               LI G CK   ++ A +L   +  +G+ PN++T++ L
Sbjct: 404 RIFPSSATYNS-------------LIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTL 450

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I G CN       +  +    L+  +   G+ PD+ TY  LI+   K   +     ++  
Sbjct: 451 IDGYCN------VRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSD 504

Query: 385 ILPSCFTPDAVTFTSLI 401
           +L +   P+  TF  L+
Sbjct: 505 MLEAGIHPNDHTFACLV 521



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 152/324 (46%), Gaps = 33/324 (10%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
            M+ S       +IL G L + + +D+V   ++ +   GL PD + Y +L  C  K G  
Sbjct: 157 EMKCSPDSKACLSILNG-LVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLY 215

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
           S    +L  +      P+   +T  I DLC ++++ EA  +F  ++  G   +++TY+ +
Sbjct: 216 SKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAM 275

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCE--PDAITYSTIIDGLCK--EAGSANFLG 257
           I+G C+TG+   A  L++E+        +V E  P+ + + T++DG CK  E  +A  L 
Sbjct: 276 IDGYCKTGNVRQAYGLYKEI--------LVAELLPNVVVFGTLVDGFCKARELVTARSL- 326

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
           F  M  F     +  Y              CLI G CK   +  A  L   +    L P+
Sbjct: 327 FVHMVKFGVDPNLYVYN-------------CLIHGHCKSGNMLEAVGLLSEMESLNLSPD 373

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           V TY ILI GLC + Q+ E         LF+++ +  +FP   TYN LI+ +CK   +  
Sbjct: 374 VFTYTILINGLCIEDQVAEANR------LFQKMKNERIFPSSATYNSLIHGYCKEYNMEQ 427

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
              +   +  S   P+ +TF++LI
Sbjct: 428 ALDLCSEMTASGVEPNIITFSTLI 451



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 142/349 (40%), Gaps = 70/349 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  F  L     K +   T  SLF  +   G+ P+ Y YN LI+  CK G +     +
Sbjct: 302 PNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGL 361

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL---RVF--------------- 189
           L  +     +PD  T+T LI  LC E ++ EA  LF K+   R+F               
Sbjct: 362 LSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCK 421

Query: 190 -----------------GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
                            G E ++ T++TLI+G C       A+ L+ EM       G+V 
Sbjct: 422 EYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIK----GIV- 476

Query: 233 EPDAITYSTIIDGLCKEAGSANFL----------------GFSCMAS-FSALNKMAF--- 272
            PD +TY+ +ID   KEA     L                 F+C+   F    +++    
Sbjct: 477 -PDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAID 535

Query: 273 YFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           ++     Q  C N   F CLI+GLC+   +  A   F  +   G+ P++ +Y  +++G  
Sbjct: 536 FYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHL 595

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
            + ++ +T       +L   +  TG+ P+L    +L   +   G V S 
Sbjct: 596 QEKRITDT------MMLQCDMIKTGILPNLLVNQLLARFYQANGYVKSA 638


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 138/289 (47%), Gaps = 44/289 (15%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+  +Y+ILI+  C++GR+   F +  ++      P   T+T LIK LC    I +A  L
Sbjct: 264 PNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNL 323

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE--------P 234
           F ++   GC+ +V TY  LI+GLCR G          E ANG      VC         P
Sbjct: 324 FDEMIPRGCKPNVHTYTVLIDGLCRDGKI--------EEANG------VCRKMVKDRIFP 369

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF--PLVRVQCLCLNFLCLIDG 292
             ITY+ +I+G CK+           + +F  L  M      P VR       F  L++G
Sbjct: 370 SVITYNALINGYCKDG--------RVVPAFELLTVMEKRACKPNVR------TFNELMEG 415

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LC++ K   A  L + +   GL P++V+YN+LI GLC +G M+      T + L   +N 
Sbjct: 416 LCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMN------TAYKLLSSMNC 469

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             + PD  T+  +IN FCK G+        G +L    + D VT T+LI
Sbjct: 470 FDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLI 518



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 172/390 (44%), Gaps = 71/390 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  + D M   +  +P   ++ +L   L      D   +LF  +   G  P+ +TY +
Sbjct: 283 EEAFGLKDQM-GEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTV 341

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C+ G++     V  ++++    P  +T+ +LI   C + R++ A  L T +    
Sbjct: 342 LIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRA 401

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+ +V T+N L+ GLCR G    A++L + M + NG       PD ++Y+ +IDGLC+E 
Sbjct: 402 CKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLD-NG-----LSPDIVSYNVLIDGLCREG 455

Query: 251 ---------GSANFLGFS--CMASFSALNK---------MAFYFPLVRVQCLCLNFL--- 287
                     S N       C+   + +N           + +  L+  + + L+ +   
Sbjct: 456 HMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGT 515

Query: 288 CLIDGLCKISKLKIARELFQSLPRA----------------------------------- 312
            LIDG+CK+ K + A  + ++L +                                    
Sbjct: 516 TLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKL 575

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           GL+P+VVTY  L+ GL   G +  +      F + + +  +G  P++Y Y I+IN  C+ 
Sbjct: 576 GLVPSVVTYTTLVDGLIRSGDITGS------FRILELMKLSGCLPNVYPYTIIINGLCQF 629

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           GRV     +   +  S  +P+ VT+T ++K
Sbjct: 630 GRVEEAEKLLSAMQDSGVSPNHVTYTVMVK 659



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 149/340 (43%), Gaps = 73/340 (21%)

Query: 113 FKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF---------------- 156
           ++R+   G       Y  ++N  CK G      + + +IL+  F                
Sbjct: 183 YRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCR 242

Query: 157 --------------------TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
                                P++V+++ LI  LC   R+ EA  L  ++   GC+    
Sbjct: 243 GLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTR 302

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           TY  LI  LC  G    A NLF+EM          C+P+  TY+ +IDGLC++       
Sbjct: 303 TYTVLIKALCDRGLIDKAFNLFDEMIPRG------CKPNVHTYTVLIDGLCRDGKIEEAN 356

Query: 257 GFSCMASFSALNKMA--FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
           G           KM     FP V      + +  LI+G CK  ++  A EL   + +   
Sbjct: 357 GVC--------RKMVKDRIFPSV------ITYNALINGYCKDGRVVPAFELLTVMEKRAC 402

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            PNV T+N L+ GLC  G     K Y+ V LL KR+   GL PD+ +YN+LI+  C+ G 
Sbjct: 403 KPNVRTFNELMEGLCRVG-----KPYKAVHLL-KRMLDNGLSPDIVSYNVLIDGLCREGH 456

Query: 375 VSSGFVIFGRILPSCF--TPDAVTFTSLIKILEINSFFRQ 412
           +++ + +   +  +CF   PD +TFT++     IN+F +Q
Sbjct: 457 MNTAYKLLSSM--NCFDIEPDCLTFTAI-----INAFCKQ 489



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 116/277 (41%), Gaps = 23/277 (8%)

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           Y+ L+    K+      +V   R+    F    + + +++  LC       A    +K+ 
Sbjct: 163 YSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKIL 222

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G  LD     +L+ G CR  +   AL +F+ M+       V C P++++YS +I GLC
Sbjct: 223 KIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKE-----VTCAPNSVSYSILIHGLC 277

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           +        G                 P  R       +  LI  LC    +  A  LF 
Sbjct: 278 EVGRLEEAFGLKDQMGEKGCQ------PSTR------TYTVLIKALCDRGLIDKAFNLFD 325

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +   G  PNV TY +LI GLC DG+++E         + +++    +FP + TYN LIN
Sbjct: 326 EMIPRGCKPNVHTYTVLIDGLCRDGKIEEANG------VCRKMVKDRIFPSVITYNALIN 379

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +CK GRV   F +   +      P+  TF  L++ L
Sbjct: 380 GYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 134/326 (41%), Gaps = 26/326 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL + + ++ MR    P  S N++   L+K       L++  ++N  GL P   TY  L
Sbjct: 529 DALFILETLVKMRILTTP-HSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTL 587

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++   + G ++  F +L  +  S   P+   +T +I  LC   R+ EA  L + ++  G 
Sbjct: 588 VDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGV 647

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  TY  ++ G    G    AL     M     E       D I YS+++ G      
Sbjct: 648 SPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELN-----DRI-YSSLLQGFVLSQK 701

Query: 252 SANFLGFSCMASFS-------ALNKMAFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIA 302
             +    S ++  +        +N++     +V     C++ LC  L+  LCK  +   +
Sbjct: 702 GIDNSEESTVSDIALRETDPECINEL---ISVVEQLGGCISGLCIFLVTRLCKEGRTDES 758

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            +L Q++   G+       +I++   C+  +   TK  E + L+ K    +G  P   ++
Sbjct: 759 NDLVQNVLERGVFLE-KAMDIIMESYCSKKK--HTKCMELITLVLK----SGFVPSFKSF 811

Query: 363 NILINCFCKIGRVSSGFVIFGRILPS 388
            ++I    K G       +   +L S
Sbjct: 812 CLVIQGLKKEGDAERARELVMELLTS 837


>gi|414586026|tpg|DAA36597.1| TPA: hypothetical protein ZEAMMB73_327514 [Zea mays]
          Length = 549

 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 152/336 (45%), Gaps = 29/336 (8%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY-DTVLSLFKRLNLTGLFPDRYTY 128
           P  AL V + M       P   +  +L G  A   H+ D    + + +   G+  D  TY
Sbjct: 114 PGAALAVLNAMAT-DGVMPDAAACTVLVGVYACRLHWFDAAYEVVRWMTANGVALDVVTY 172

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           + LI+  C  GRV+    VL  +L     P+A T+T ++   C    I EA  L   +  
Sbjct: 173 STLISGLCSAGRVAEALGVLDLMLEEGCQPNAHTYTPILHAYCTSGMIHEAKELLETMIA 232

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G      TYN L+  LC+      A N  + +   +   G    PD ITYST +DGLCK
Sbjct: 233 AGFAPSTATYNVLVEALCKA----CAFNEVDALLEESSAKGWT--PDTITYSTYMDGLCK 286

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           +             SF+ ++KM      +R   + LN   L+DG+C+ S    A+ L + 
Sbjct: 287 DG--------RVHKSFALVDKMLSVG--LRPNEITLNI--LLDGVCRRSTAWAAKCLLEC 334

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
               G   NVV YN ++R LC++      + + +V  LF  +   G+ P+ +T +I+I+ 
Sbjct: 335 SAEIGWHVNVVNYNTVMRRLCDE------RRWLSVVKLFVDIVKKGIAPNSWTLSIVIHS 388

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            CK+GR+     + G      F  D VT+ +LI+ L
Sbjct: 389 LCKLGRLHEALCLIG---SEEFVADVVTYNTLIRYL 421



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 46/312 (14%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +++ L   L         L +   +   G  P+ +TY  +++ +C  G +     +L 
Sbjct: 169 VVTYSTLISGLCSAGRVAEALGVLDLMLEEGCQPNAHTYTPILHAYCTSGMIHEAKELLE 228

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++ + F P   T+  L++ LC      E  AL  +    G   D  TY+T ++GLC+ G
Sbjct: 229 TMIAAGFAPSTATYNVLVEALCKACAFNEVDALLEESSAKGWTPDTITYSTYMDGLCKDG 288

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               +  L ++M        V   P+ IT + ++DG+C+ + +       C+   SA  +
Sbjct: 289 RVHKSFALVDKM------LSVGLRPNEITLNILLDGVCRRSTA---WAAKCLLECSA--E 337

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           + ++  +V       N+  ++  LC   +     +LF  + + G+ PN  T +I+I  LC
Sbjct: 338 IGWHVNVV-------NYNTVMRRLCDERRWLSVVKLFVDIVKKGIAPNSWTLSIVIHSLC 390

Query: 330 NDGQMDET---------------------------KHYETVFLLFKRLNSTGLFPDLYTY 362
             G++ E                            K YE  +LL   +   G+ P+  TY
Sbjct: 391 KLGRLHEALCLIGSEEFVADVVTYNTLIRYLNFLGKAYEA-YLLLHHMIEKGIAPNDTTY 449

Query: 363 NILINCFCKIGR 374
           ++LI+C CK G+
Sbjct: 450 SLLIDCLCKEGK 461



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 127/308 (41%), Gaps = 38/308 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N+L   L K   ++ V +L +  +  G  PD  TY+  ++  CK GRV   F +
Sbjct: 237 PSTATYNVLVEALCKACAFNEVDALLEESSAKGWTPDTITYSTYMDGLCKDGRVHKSFAL 296

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + ++L     P+ +T   L+  +C  S    A  L       G  ++V  YNT++  LC 
Sbjct: 297 VDKMLSVGLRPNEITLNILLDGVCRRSTAWAAKCLLECSAEIGWHVNVVNYNTVMRRLCD 356

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-----EA----GSANFLGF 258
               +  + LF ++            P++ T S +I  LCK     EA    GS  F+  
Sbjct: 357 ERRWLSVVKLFVDIVKKG------IAPNSWTLSIVIHSLCKLGRLHEALCLIGSEEFV-- 408

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLC-------------LIDGLCKISKLKIAREL 305
           + + +++ L +   +        L L+ +              LID LCK  K  +A   
Sbjct: 409 ADVVTYNTLIRYLNFLGKAYEAYLLLHHMIEKGIAPNDTTYSLLIDCLCKEGKFLVALGC 468

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
                  GL   VV+   ++RGL   G++ E +       L   +   G   D+Y Y  L
Sbjct: 469 LNRCMEGGLSKAVVSS--ILRGLIAGGKLRELQ------ALIGWILGQGFVLDVYIYQEL 520

Query: 366 INCFCKIG 373
           I  FCK G
Sbjct: 521 IISFCKKG 528



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 8/141 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLA-KTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +EALC    ++        V ++N L   L    K Y+  L L   +   G+ P+  TY+
Sbjct: 396 HEALC----LIGSEEFVADVVTYNTLIRYLNFLGKAYEAYLLLHHMIE-KGIAPNDTTYS 450

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +LI+C CK G+       L R +    +   V+  S+++ L A  ++ E  AL   +   
Sbjct: 451 LLIDCLCKEGKFLVALGCLNRCMEGGLSKAVVS--SILRGLIAGGKLRELQALIGWILGQ 508

Query: 190 GCELDVFTYNTLINGLCRTGH 210
           G  LDV+ Y  LI   C+ G+
Sbjct: 509 GFVLDVYIYQELIISFCKKGY 529


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 146/332 (43%), Gaps = 26/332 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            E  C+ + M+      P   ++N L   L+K  H D  L+  K     G   D+  Y+ 
Sbjct: 357 EEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSA 416

Query: 131 LINCFCKMGRVSHG-FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +++ FC+ GR+     +V+    R C  PD VT+T+++   C   RI EA  +  ++   
Sbjct: 417 IVHSFCQKGRMDEAKSLVIDMYSRGC-NPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKH 475

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           GC+ +  +Y  L+NGLC +G ++ A     EM N + E      P+AITY  ++ GL +E
Sbjct: 476 GCKPNTVSYTALLNGLCHSGKSLEA----REMINVSEEHWWT--PNAITYGAVMHGLRRE 529

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                 L  +C  +   + K  F  P        +    LI  LC+  K+  A++  +  
Sbjct: 530 GK----LSEACDLTREMVEKGFFPTP--------VEINLLIQSLCQNQKVVEAKKYLEEC 577

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G   NVV +  +I G C  G M      E    +   +  +G  PD  TY  L +  
Sbjct: 578 LNKGCAINVVNFTTVIHGFCQIGDM------EAALSVLDDMYLSGKHPDAVTYTALFDAL 631

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            K GR+     +  ++L     P  VT+ S+I
Sbjct: 632 GKKGRLDEAAELIVKMLSKGLDPTPVTYRSVI 663



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 151/324 (46%), Gaps = 28/324 (8%)

Query: 85  PSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNL-TGLFPDRYTYNILINCFCKMGR 140
           PS+   P   S+  + G L K K  + V  L +++   + L PD+ TYN LI+   K G 
Sbjct: 332 PSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGH 391

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                  L       F  D V +++++   C + R+ EA +L   +   GC  DV TY  
Sbjct: 392 ADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTA 451

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           +++G CR G    A  + ++M      +   C+P+ ++Y+ +++GLC    S   L    
Sbjct: 452 IVDGFCRLGRIDEAKKILQQM------YKHGCKPNTVSYTALLNGLCHSGKS---LEARE 502

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           M + S  +   ++ P        + +  ++ GL +  KL  A +L + +   G  P  V 
Sbjct: 503 MINVSEEH---WWTPNA------ITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVE 553

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
            N+LI+ LC + ++ E K Y     L + LN  G   ++  +  +I+ FC+IG + +   
Sbjct: 554 INLLIQSLCQNQKVVEAKKY-----LEECLNK-GCAINVVNFTTVIHGFCQIGDMEAALS 607

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           +   +  S   PDAVT+T+L   L
Sbjct: 608 VLDDMYLSGKHPDAVTYTALFDAL 631



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 129/316 (40%), Gaps = 23/316 (7%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           P  +F  +    ++       L +   +   G+ P     N  I    K G++      L
Sbjct: 234 PPEAFGYVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFL 293

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
            R+  +   PD VT+ SLIK  C  +RI +A  L   L   GC  D  +Y T++  LC+ 
Sbjct: 294 ERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKE 353

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                   L E+M   +        PD +TY+T+I  L K   + + L F          
Sbjct: 354 KKIEEVKCLMEKMVWNSNLI-----PDQVTYNTLIHMLSKHGHADDALAF-----LKEAQ 403

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
              F+   V        +  ++   C+  ++  A+ L   +   G  P+VVTY  ++ G 
Sbjct: 404 DKGFHIDKV-------GYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGF 456

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C  G++DE K       + +++   G  P+  +Y  L+N  C  G+      +       
Sbjct: 457 CRLGRIDEAKK------ILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEH 510

Query: 389 CFTPDAVTFTSLIKIL 404
            +TP+A+T+ +++  L
Sbjct: 511 WWTPNAITYGAVMHGL 526



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 135/320 (42%), Gaps = 24/320 (7%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
             R S  PV  + +L   L+KTK       + + +   G+      +  ++  + + G++
Sbjct: 193 QWRYSHHPVVYYTML-DVLSKTKLCQGARRVLRLMTRRGIECPPEAFGYVMVSYSRAGKL 251

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
            +   VL  + ++   P      + I  L    ++ +A     +++V G + D+ TYN+L
Sbjct: 252 RNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSL 311

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           I G C       AL L   + +        C PD ++Y T++  LCKE          C+
Sbjct: 312 IKGYCDLNRIEDALELIAGLPSKG------CPPDKVSYYTVMGFLCKE---KKIEEVKCL 362

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
                + KM +   L+  Q   + +  LI  L K      A    +     G   + V Y
Sbjct: 363 -----MEKMVWNSNLIPDQ---VTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGY 414

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           + ++   C  G+MDE K       L   + S G  PD+ TY  +++ FC++GR+     I
Sbjct: 415 SAIVHSFCQKGRMDEAKS------LVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKI 468

Query: 382 FGRILPSCFTPDAVTFTSLI 401
             ++      P+ V++T+L+
Sbjct: 469 LQQMYKHGCKPNTVSYTALL 488



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           +  +I+ FC++G +     VL  +  S   PDAVT+T+L   L  + R+ EAA L  K+ 
Sbjct: 589 FTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKML 648

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             G +    TY ++I+   + G     LNL E+M           +P    Y+ +I+ LC
Sbjct: 649 SKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKMLKR--------QPFRTVYNQVIEKLC 700



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 3/142 (2%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL V D M  +    P   ++  LF  L K    D    L  ++   GL P   TY  +I
Sbjct: 605 ALSVLDDMY-LSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVI 663

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + + + GRV     +L ++L+    P    +  +I+ LC    + EA  L  K+     +
Sbjct: 664 HRYSQWGRVDDMLNLLEKMLKR--QPFRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASK 721

Query: 193 LDVFTYNTLINGLCRTGHTIVA 214
           +D  T + L+    + G  I A
Sbjct: 722 VDANTCHVLMESYLKKGVAISA 743



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 108/301 (35%), Gaps = 36/301 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  +   L +         L + +   G FP     N+LI   C+  +V      
Sbjct: 514 PNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKY 573

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L   L      + V FT++I   C    +  A ++   + + G   D  TY  L + L +
Sbjct: 574 LEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGK 633

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  L  +M +         +P  +TY ++I    +     + L          L
Sbjct: 634 KGRLDEAAELIVKMLSKG------LDPTPVTYRSVIHRYSQWGRVDDMLNL--------L 679

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            KM    P   V      +  +I+ LC    L+ A +L   + R     +  T ++L+  
Sbjct: 680 EKMLKRQPFRTV------YNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANTCHVLMES 733

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
               G       Y+    +F+R     L PDL          C+  +VS   V+ G+++ 
Sbjct: 734 YLKKGVA--ISAYKVACRMFRR----NLTPDLK--------LCE--KVSKKLVLDGKLVE 777

Query: 388 S 388
           +
Sbjct: 778 A 778


>gi|302795973|ref|XP_002979749.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
 gi|300152509|gb|EFJ19151.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
          Length = 388

 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 147/342 (42%), Gaps = 40/342 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  FN +    A+  H D  L   + +   G  PD  TYN LI+ F K+ R      +
Sbjct: 9   PNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCNPDEVTYNTLIDVFHKLERFDSAREL 68

Query: 148 LGRILRSCFTPD--AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           L ++  S   P   A T+ ++I   C    + +A  +   +   GC+ DV TYNTLI+GL
Sbjct: 69  LEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILELMIDSGCKPDVVTYNTLISGL 128

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-------EAGSANFLGF 258
           C+      AL L  EM            P+ ITY+T+I+GL +       +A     +  
Sbjct: 129 CKLRRADDALQLMREMEPA---------PNTITYNTVINGLWRSRKDTEAQALLDEMISV 179

Query: 259 SCMASFSALN----------------KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
            C  S S  N                 +  Y    + +   + F  L+DG  +  +L+ A
Sbjct: 180 GCPFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCEADEVTFATLVDGFLRDKRLEDA 239

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
                 + RAG+  +V +Y  L+  LC+ G     K  E   L+  R    G  P L +Y
Sbjct: 240 GGTLDWMARAGIPSDVKSYTKLLNALCDRGSA--QKACEIFNLMVDR----GYAPTLVSY 293

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           N+L+   CK  RV    V+F  +      PD V++T++IK L
Sbjct: 294 NVLLKGLCKALRVEHALVLFREMQEREIQPDVVSYTTVIKGL 335



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+++N +   L +++  +  + +F  +       D  T+  L++ F +  R+      L 
Sbjct: 185 VSTYNCVIANLCRSREMEKAVDVFLYMRKKKCEADEVTFATLVDGFLRDKRLEDAGGTLD 244

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            + R+    D  ++T L+  LC      +A  +F  +   G    + +YN L+ GLC+  
Sbjct: 245 WMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVLLKGLCKAL 304

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
               AL LF EM           +PD ++Y+T+I GLC
Sbjct: 305 RVEHALVLFREMQERE------IQPDVVSYTTVIKGLC 336



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 9/178 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ VF YM   +     VT F  L     + K  +        +   G+  D  +Y  
Sbjct: 202 EKAVDVFLYMRKKKCEADEVT-FATLVDGFLRDKRLEDAGGTLDWMARAGIPSDVKSYTK 260

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  C  G       +   ++   + P  V++  L+K LC   R+  A  LF +++   
Sbjct: 261 LLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVLLKGLCKALRVEHALVLFREMQERE 320

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            + DV +Y T+I GLC       A++LF + +          EP+ IT+ T+  GL K
Sbjct: 321 IQPDVVSYTTVIKGLCAARRIDEAIDLFRDPS--------FLEPNDITHETLRIGLEK 370


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 157/332 (47%), Gaps = 30/332 (9%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++ ++   P   SFN     LAK+ + D     F        F D Y++ I I  FC+ G
Sbjct: 63  LMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGRTQF-DVYSFWITIKAFCENG 121

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            VS GF +L ++     +P+   +T LI+  C    I +A  +F+++   G   + + Y 
Sbjct: 122 NVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYT 181

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            +ING  + G+      L+++M       GV+  P+  TY+++I   C++   +  L F 
Sbjct: 182 IMINGFFKKGYKKDGFELYQKMK----LVGVL--PNLYTYNSLITEYCRDGKLS--LAFK 233

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
               F  ++K         V C  + +  LI GLC+  ++  A  L + + RA + P   
Sbjct: 234 V---FDEISKRG-------VACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTR 283

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           T+N+L+ GLCN GQ+D+   Y       ++L   GL P L TYNILI+ F K+G  S   
Sbjct: 284 TFNMLMDGLCNTGQLDKALSY------LEKLKLIGLCPTLVTYNILISGFSKVGNSSVVS 337

Query: 380 VIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411
            +   +     +P  VT+T L     +N+F R
Sbjct: 338 ELVREMEDRGISPSKVTYTIL-----MNTFVR 364



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 141/317 (44%), Gaps = 30/317 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  + IL     +    D    +F R++  GL  ++Y Y I+IN F K G    GF +
Sbjct: 140 PNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFEL 199

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++      P+  T+ SLI + C + ++  A  +F ++   G   +  TYN LI GLCR
Sbjct: 200 YQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCR 259

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  L E M   +        P   T++ ++DGLC                   L
Sbjct: 260 KGQVSKAEGLLERMKRAH------INPTTRTFNMLMDGLCNTG---------------QL 298

Query: 268 NKMAFYFPLVRVQCLC---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           +K   Y   +++  LC   + +  LI G  K+    +  EL + +   G+ P+ VTY IL
Sbjct: 299 DKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTIL 358

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           +        ++  K YE +F L KR+   GL PD +TY +LI+  C  G +     ++  
Sbjct: 359 MNTFVRSDDIE--KAYE-MFHLMKRI---GLVPDQHTYGVLIHGLCIKGNMVEASKLYKS 412

Query: 385 ILPSCFTPDAVTFTSLI 401
           ++     P+ V + ++I
Sbjct: 413 MVEMHLQPNDVIYNTMI 429



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 119/293 (40%), Gaps = 35/293 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L     +         +F  ++  G+  +  TYNILI   C+ G+VS    +
Sbjct: 210 PNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGL 269

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L R+ R+   P   TF  L+  LC   ++ +A +   KL++ G    + TYN LI+G  +
Sbjct: 270 LERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSK 329

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMASFSA 266
            G++ V   L  EM +          P  +TY+ +++   +       +  F  M     
Sbjct: 330 VGNSSVVSELVREMEDRG------ISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGL 383

Query: 267 LNKMAFYFPLVRVQCLCLNFL----------------------CLIDGLCKISKLKIARE 304
           +     Y  L+   C+  N +                       +I+G CK      A +
Sbjct: 384 VPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALK 443

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
             + + + G+ PNV +Y   I+ LC DG+  E K       L K +   GL P
Sbjct: 444 FLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKR------LLKEMTEAGLKP 490


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 140/306 (45%), Gaps = 30/306 (9%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGDI       A  VFD  +     RP V S+N L     +    D    L   ++ +G+
Sbjct: 155 EGDIRV-----AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGV 208

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD YTY++LIN  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  
Sbjct: 209 XPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           ++ ++       D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKG------LKPDKITYTT 322

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +IDG CKE             +F    +M        ++   + +  LI GLC+  +   
Sbjct: 323 LIDGCCKEG--------DLDTAFEHRKRMI----QENIRLDDVAYTALISGLCQEGRSVD 370

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A ++ + +   GL P+  TY ++I  +C  G + +         L K +   G  P + T
Sbjct: 371 AEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSK------LLKEMQXDGHAPSVVT 424

Query: 362 YNILIN 367
           YN+L+N
Sbjct: 425 YNVLMN 430



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 150/310 (48%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   + 
Sbjct: 145 FNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMH 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++  A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 205 ASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+ G  N        +   +++M+ 
Sbjct: 265 LAMEIYKQMLSQS------LLPDLITYNTLIYGLCKK-GDLN-------QAHDLIDEMS- 309

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 310 ---MKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 366

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN  CK G V  G  +   +      
Sbjct: 367 RSVDAEK-------MMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHA 419

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 420 PSVVTYNVLM 429



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 131/304 (43%), Gaps = 28/304 (9%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L K K++  V   ++     G     Y +NIL + FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPS 176

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V++ +L+        + E   L + +   G   DV+TY+ LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFD 236

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM       G+V  P+ +T++T+IDG CK  G  +               M  Y  ++  
Sbjct: 237 EMLVK----GLV--PNGVTFTTLIDGHCKN-GRVDL-------------AMEIYKQMLSQ 276

Query: 280 QCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
             L   + +  LI GLCK   L  A +L   +   GL P+ +TY  LI G C +G +D  
Sbjct: 277 SLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLD-- 334

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
               T F   KR+    +  D   Y  LI+  C+ GR      +   +L     PD  T+
Sbjct: 335 ----TAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTY 390

Query: 398 TSLI 401
           T +I
Sbjct: 391 TMII 394



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 1/134 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  + D M +M+  +P   ++  L     K    DT     KR+    +  D   Y  
Sbjct: 299 NQAHDLIDEM-SMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTA 357

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C+ GR      ++  +L     PD  T+T +I ++C +  + + + L  +++  G
Sbjct: 358 LISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDG 417

Query: 191 CELDVFTYNTLING 204
               V TYN L+NG
Sbjct: 418 HAPSVVTYNVLMNG 431



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 29/142 (20%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK---------- 338
           +++ L K+   K+    ++     G   ++  +NIL    C +G +   +          
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWG 172

Query: 339 ------HYETV-------------FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                  Y T+             F L   ++++G+ PD+YTY++LIN  CK  ++    
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXAN 232

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  +L     P+ VTFT+LI
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLI 254


>gi|302813417|ref|XP_002988394.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
 gi|300143796|gb|EFJ10484.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
          Length = 388

 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 147/342 (42%), Gaps = 40/342 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  FN +    A+  H D  L   + +   G  PD  TYN LI+ F K+ R      +
Sbjct: 9   PNVVIFNSVVNGFARAGHLDGALGTLRMMRKAGCDPDEVTYNTLIDVFHKLERFDSAREL 68

Query: 148 LGRILRSCFTPD--AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           L ++  S   P   A T+ ++I   C    + +A  +   +   GC+ DV TYNTLI+GL
Sbjct: 69  LEQMWDSGIRPGVMAETYNNVIASFCEVCNVRKAKGILELMIDSGCKPDVVTYNTLISGL 128

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-------EAGSANFLGF 258
           C+      AL L  EM            P+ ITY+T+I+GL +       +A     +  
Sbjct: 129 CKVRRADDALQLMREMEPA---------PNTITYNTVINGLWRSRKDTEAQALLDEMISV 179

Query: 259 SCMASFSALN----------------KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
            C  S S  N                 +  Y    + +   + F  L+DG  +  +L+ A
Sbjct: 180 GCPFSVSTYNCVIANLCRSREMEKAVDVFLYMRKKKCETDEVTFATLVDGFLRDKRLEDA 239

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
                 + RAG+  +V +Y  L+  LC+ G     K  E   L+  R    G  P L +Y
Sbjct: 240 GGTLDWMARAGIPSDVKSYTKLLNALCDRGSA--QKACEIFNLMVDR----GYAPTLVSY 293

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           N+L+   CK  RV    V+F  +      PD V++T++IK L
Sbjct: 294 NVLLKGLCKALRVEHALVLFREMQEREIQPDVVSYTTVIKGL 335



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+++N +   L +++  +  + +F  +       D  T+  L++ F +  R+      L 
Sbjct: 185 VSTYNCVIANLCRSREMEKAVDVFLYMRKKKCETDEVTFATLVDGFLRDKRLEDAGGTLD 244

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            + R+    D  ++T L+  LC      +A  +F  +   G    + +YN L+ GLC+  
Sbjct: 245 WMARAGIPSDVKSYTKLLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVLLKGLCKAL 304

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
               AL LF EM           +PD ++Y+T+I GLC
Sbjct: 305 RVEHALVLFREMQERE------IQPDVVSYTTVIKGLC 336



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 9/178 (5%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ VF YM   +     VT F  L     + K  +        +   G+  D  +Y  
Sbjct: 202 EKAVDVFLYMRKKKCETDEVT-FATLVDGFLRDKRLEDAGGTLDWMARAGIPSDVKSYTK 260

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  C  G       +   ++   + P  V++  L+K LC   R+  A  LF +++   
Sbjct: 261 LLNALCDRGSAQKACEIFNLMVDRGYAPTLVSYNVLLKGLCKALRVEHALVLFREMQERE 320

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            + DV +Y T+I GLC       A++LF + +          EP+ IT+ T+  GL K
Sbjct: 321 IQPDVVSYTTVIKGLCAARRIDEAIDLFRDTS--------FLEPNDITHETLRIGLEK 370


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 153/350 (43%), Gaps = 37/350 (10%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           ++D+M       P      ++   L ++K +D VL LFK +   G  PD+  Y   +   
Sbjct: 18  LYDFM-RQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAA 76

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            K+G +     +   + R    P+   +  LI  LC E RI +A  LF ++ V     + 
Sbjct: 77  VKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNR 136

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK------- 248
            T+NTLI+G C+ G   VA+ L E M           EP  IT+++++ GLCK       
Sbjct: 137 VTFNTLIDGYCKAGEVDVAIGLRERMKKEK------VEPSIITFNSLLSGLCKARRIEEA 190

Query: 249 -----EAGSANFL--GFSCMASFSALNK--------MAFYFPLVRVQCLCLNFLC--LID 291
                E     F+  GF+    F  L K        +  Y   +       N+ C  L++
Sbjct: 191 RCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLN 250

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           GLCK  K++ A E+ +SL   GL+P  V YN ++ G C  G MD         L  +++ 
Sbjct: 251 GLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRA------ILTIEQME 304

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           S GL P+   +N +I+ FC++  +        +++     P   T+  LI
Sbjct: 305 SRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILI 354



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 143/322 (44%), Gaps = 27/322 (8%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R  RP   +FN +     + +  D      K++   G+ P   TYNILI+ + ++  
Sbjct: 303 MESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCV 362

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
            S  F +L  +  +   P+ +++ SLI  LC + +I+EA  +   +   G   +   YN 
Sbjct: 363 FSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNM 422

Query: 201 LINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           LI+G C  G    AL  F+EM+ NG G          +TY+++I GLCK           
Sbjct: 423 LIDGSCTVGKLREALRFFDEMSKNGIG-------ATIVTYNSLIKGLCK----------- 464

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            M       +M F           + +  LI G       +   EL++++ + GL P + 
Sbjct: 465 -MGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTIN 523

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           T++ LI G   +G     K  ET+F    ++N   L PD   YN +I+C+ + G V   F
Sbjct: 524 TFHPLISGCSKEG----IKLKETLFNEMLQMN---LSPDRVVYNAMIHCYQETGHVQKAF 576

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +   ++     PD  T+ SLI
Sbjct: 577 SLQKEMVDMGVRPDNKTYNSLI 598



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 134/308 (43%), Gaps = 24/308 (7%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           +IL   L K    +    + K L   GL P    YN ++N +C++G +    + + ++  
Sbjct: 246 SILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMES 305

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
               P+ + F S+I   C    I +A     K+   G    V TYN LI+G  R      
Sbjct: 306 RGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSR 365

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
              + EEM   NGE     +P+ I+Y ++I+ LCK+           + +   L  M   
Sbjct: 366 CFQILEEMEE-NGE-----KPNVISYGSLINCLCKDG--------KILEAEMVLRDMVGR 411

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
             L         +  LIDG C + KL+ A   F  + + G+   +VTYN LI+GLC  G+
Sbjct: 412 GVLPNANI----YNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGK 467

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           + E    E +F L   + STG  PD+ TYN LI+ +   G       ++  +      P 
Sbjct: 468 LKEA---EEMFFL---ITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPT 521

Query: 394 AVTFTSLI 401
             TF  LI
Sbjct: 522 INTFHPLI 529



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 137/315 (43%), Gaps = 25/315 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++NIL     +   +     + + +   G  P+  +Y  LINC CK G++    +V
Sbjct: 345 PSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMV 404

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     P+A  +  LI   C   ++ EA   F ++   G    + TYN+LI GLC+
Sbjct: 405 LRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCK 464

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  +F  +    G     C PD ITY+++I G      S       C+  +  +
Sbjct: 465 MGKLKEAEEMF-FLITSTGH----C-PDVITYNSLISGYSNAGNSQ-----KCLELYETM 513

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K+    P +        F  LI G C    +K+   LF  + +  L P+ V YN +I  
Sbjct: 514 KKLGLK-PTINT------FHPLISG-CSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIH- 564

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C      ET H +  F L K +   G+ PD  TYN LI    K G++S    +   +  
Sbjct: 565 -C----YQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKA 619

Query: 388 SCFTPDAVTFTSLIK 402
               P+A T++ LI+
Sbjct: 620 KGLIPEADTYSLLIQ 634



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 151/348 (43%), Gaps = 44/348 (12%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +++R   P   +FN L     K    D  + L +R+    + P   T+N L++  CK  R
Sbjct: 127 MSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARR 186

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA-ALFTKLRVFGCELDVFTYN 199
           +     +L  I  + F PD  T++ +   L        AA  L+ +    G ++D +T +
Sbjct: 187 IEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCS 246

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            L+NGLC+ G    A  + + +     E G+V  P  + Y+TI++G C+           
Sbjct: 247 ILLNGLCKEGKVEKAEEVLKSLV----EHGLV--PGEVIYNTIVNGYCQ----------- 289

Query: 260 CMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
                  +++       +  + L   C+ F  +ID  C++  +  A E  + +   G+ P
Sbjct: 290 ----IGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAP 345

Query: 317 NVVTYNILIRG---LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           +V TYNILI G   LC          +   F + + +   G  P++ +Y  LINC CK G
Sbjct: 346 SVETYNILIDGYGRLC---------VFSRCFQILEEMEENGEKPNVISYGSLINCLCKDG 396

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQVA 414
           ++    ++   ++     P+A  +  LI       K+ E   FF +++
Sbjct: 397 KILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMS 444



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 129/318 (40%), Gaps = 34/318 (10%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
            +P V S+  L  CL K         + + +   G+ P+   YN+LI+  C +G++    
Sbjct: 378 EKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREAL 437

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
                + ++      VT+ SLIK LC   ++ EA  +F  +   G   DV TYN+LI+G 
Sbjct: 438 RFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGY 497

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
              G++   L L+E M     + G+  +P   T+  +I G  KE        F+ M   +
Sbjct: 498 SNAGNSQKCLELYETMK----KLGL--KPTINTFHPLISGCSKEGIKLKETLFNEMLQMN 551

Query: 266 ALNKMAFYFPLVR----------------------VQCLCLNFLCLIDGLCKISKLKIAR 303
                  Y  ++                       V+     +  LI G  K  KL   +
Sbjct: 552 LSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETK 611

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           +L   +   GL+P   TY++LI+G C+       K +   ++ ++ +   G  P++   N
Sbjct: 612 DLVDDMKAKGLIPEADTYSLLIQGHCD------LKDFNGAYVWYREMLENGFLPNVCICN 665

Query: 364 ILINCFCKIGRVSSGFVI 381
            L     K GR+     I
Sbjct: 666 ELSTGLRKDGRLQEAQSI 683


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 136/312 (43%), Gaps = 24/312 (7%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           F++L     + K  +  L  F  +   G  P+  T N +++ F K+ R    +V+   + 
Sbjct: 149 FDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMF 208

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           R        TF  +I  LC E ++ +A      +   G + +V TYNT+I+G C  G   
Sbjct: 209 RMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQ 268

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A  +F+ M +         EPD  TY++ I GLCKE       G  C      L   A 
Sbjct: 269 RARVIFQTMKDKG------LEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNA- 321

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG C    L  A      +   G+M ++VTYN+ I  L  +G
Sbjct: 322 -----------VTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEG 370

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           +M +  +      + K +   G+ PD  T+NILIN +C+ G     F +   ++     P
Sbjct: 371 RMGDADN------MIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQP 424

Query: 393 DAVTFTSLIKIL 404
             VT+TSLI +L
Sbjct: 425 TLVTYTSLIYVL 436



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 134/316 (42%), Gaps = 59/316 (18%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++N+    L          ++ K +   G+ PD  T+NILIN +C+ G     F +L 
Sbjct: 356 LVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLD 415

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            ++     P  VT+TSLI  L   +R+ EA ALF+K++  G   D+  +N LI+G C  G
Sbjct: 416 EMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANG 475

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
           +   A  L +EM N      +   PD ITY+T                            
Sbjct: 476 NIDRAFQLLKEMDN------MKVLPDEITYNT---------------------------- 501

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                              L+ G C+  K++ AR+L   + R G+ P+ ++YN LI G  
Sbjct: 502 -------------------LMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYS 542

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
             G M +       F +   + +TG  P + TYN LI   CK         +   ++   
Sbjct: 543 KRGDMKD------AFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKG 596

Query: 390 FTPDAVTFTSLIKILE 405
            TPD  T+ S+I+ +E
Sbjct: 597 ITPDDSTYLSIIEAME 612



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 165/342 (48%), Gaps = 37/342 (10%)

Query: 87  RPPVTSFN-ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           +P V ++N I+ G   + K +     +F+ +   GL PD YTYN  I+  CK GR+    
Sbjct: 248 KPNVVTYNTIIHGHCLRGK-FQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEAS 306

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            ++ ++L     P+AVT+ +LI   C +  + +A A   ++   G    + TYN  I+ L
Sbjct: 307 GLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHAL 366

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF------- 258
              G    A N+ +EM     E G++  PDA+T++ +I+G C+   +    G        
Sbjct: 367 FMEGRMGDADNMIKEMR----EKGMM--PDAVTHNILINGYCRCGDAKRAFGLLDEMVGK 420

Query: 259 ---SCMASFSAL-------NKMA---FYFPLVRVQCLCLN---FLCLIDGLCKISKLKIA 302
                + ++++L       N+M      F  ++ + L  +   F  LIDG C    +  A
Sbjct: 421 GIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRA 480

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
            +L + +    ++P+ +TYN L++G C +G+++E +       L   +   G+ PD  +Y
Sbjct: 481 FQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQ------LLDEMKRRGIKPDHISY 534

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           N LI+ + K G +   F +   ++ + F P  +T+ +LI+ L
Sbjct: 535 NTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGL 576



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 142/339 (41%), Gaps = 39/339 (11%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           PNEAL  F Y++  +   P + + N +     K         L+  +    +    YT+N
Sbjct: 162 PNEALECF-YLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFN 220

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           I+IN  CK G++      +G +      P+ VT+ ++I   C   +   A  +F  ++  
Sbjct: 221 IMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDK 280

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G E D +TYN+ I+GLC+ G    A  L  +M  G    G+V  P+A+TY+ +IDG C +
Sbjct: 281 GLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEG----GLV--PNAVTYNALIDGYCNK 334

Query: 250 -------AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
                  A     +    MAS    N                     I  L    ++  A
Sbjct: 335 GDLDKAYAYRDEMISKGIMASLVTYN-------------------LFIHALFMEGRMGDA 375

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
             + + +   G+MP+ VT+NILI G C  G        +  F L   +   G+ P L TY
Sbjct: 376 DNMIKEMREKGMMPDAVTHNILINGYCRCGDA------KRAFGLLDEMVGKGIQPTLVTY 429

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             LI    K  R+     +F +I      PD + F +LI
Sbjct: 430 TSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALI 468



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 7/176 (3%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  + D M+  +  +P + ++  L   L K        +LF ++   GL PD   +N LI
Sbjct: 410 AFGLLDEMVG-KGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALI 468

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  C  G +   F +L  +      PD +T+ +L++  C E ++ EA  L  +++  G +
Sbjct: 469 DGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIK 528

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            D  +YNTLI+G  + G    A  + +EM           +P  +TY+ +I GLCK
Sbjct: 529 PDHISYNTLISGYSKRGDMKDAFRVRDEMMTTG------FDPTILTYNALIQGLCK 578



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 6/159 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P +  FN L        + D    L K ++   + PD  TYN L+  +C+ G+V     +
Sbjct: 459 PDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQL 518

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  + R    PD +++ +LI        + +A  +  ++   G +  + TYN LI GLC+
Sbjct: 519 LDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCK 578

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
                 A  L +EM +     G+   PD  TY +II+ +
Sbjct: 579 NQEGEHAEELLKEMVSK----GIT--PDDSTYLSIIEAM 611



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 1/97 (1%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + D M   R  +P   S+N L    +K         +   +  TG  P   TYN L
Sbjct: 514 EARQLLDEM-KRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNAL 572

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
           I   CK     H   +L  ++    TPD  T+ S+I+
Sbjct: 573 IQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIE 609


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 150/334 (44%), Gaps = 31/334 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +F+ ML+   +  PV   +++       +  D    +FK +N  G  PD    N 
Sbjct: 478 DDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDG-HKIFKEMNRRGCQPDLTLLNT 536

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            ++C  K G V  G  +   I    F PD  +++ LI  L    +  E +++F  ++  G
Sbjct: 537 YMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQG 596

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             LD   YN +++G C++G    A  + EEM            P   TY +IIDGL K  
Sbjct: 597 FALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKR------VPPTVATYGSIIDGLAK-- 648

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC---LIDGLCKISKLKIARELFQ 307
                           L++    F   + + + LN +    LIDG  K+ ++  A  + +
Sbjct: 649 -------------IDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILE 695

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            + + GL PNV T+N L+  L    +++E        + F+ +      P+ YTY+ILIN
Sbjct: 696 EMMKKGLTPNVYTWNSLMDALVKAEEINEA------LICFQSMKEMKCSPNTYTYSILIN 749

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             C++ + +  FV +  +      P+ VT+T++I
Sbjct: 750 GLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMI 783



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 150/325 (46%), Gaps = 28/325 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + + NI+   L K K ++    +F+  +  G  P+  TY  LI+   K G V   + +
Sbjct: 424 PNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRL 483

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L +    + V +TSLI++     R  +   +F ++   GC+ D+   NT ++ + +
Sbjct: 484 FENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFK 543

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G       +FE++      +G +  PD  +YS +I GL K AG A        + F A+
Sbjct: 544 AGDVEKGRAIFEDIKG----YGFL--PDVRSYSILIHGLTK-AGQAR----ETSSIFHAM 592

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +  F             +  ++DG CK  KL  A E+ + +    + P V TY  +I G
Sbjct: 593 KQQGFALD-------ARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDG 645

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           L    ++DE       ++LF+   S G+  ++  Y+ LI+ F K+GR+   ++I   ++ 
Sbjct: 646 LAKIDRLDEA------YMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMK 699

Query: 388 SCFTPDAVTFTS----LIKILEINS 408
              TP+  T+ S    L+K  EIN 
Sbjct: 700 KGLTPNVYTWNSLMDALVKAEEINE 724



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 132/295 (44%), Gaps = 24/295 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++IL   L K        S+F  +   G   D   YN +++ FCK G++   + V
Sbjct: 564 PDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEV 623

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P   T+ S+I  L    R+ EA  LF + +  G EL+V  Y++LI+G  +
Sbjct: 624 LEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGK 683

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  + EEM            P+  T+++++D L K A   N      +  F ++
Sbjct: 684 VGRIDEAYLILEEMMKKG------LTPNVYTWNSLMDALVK-AEEIN----EALICFQSM 732

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +M       +       +  LI+GLC++ K   A   +Q + + GL+PNVVTY  +I G
Sbjct: 733 KEM-------KCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAG 785

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           L   G + +         LF+R  + G  PD  ++N LI       R    + +F
Sbjct: 786 LAKVGNITDACS------LFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVF 834



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 144/349 (41%), Gaps = 52/349 (14%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P +  +N+   C  K  + D     F  L   GL PD  +Y  +I   CK GR+S    
Sbjct: 249 EPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEE 308

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           + G++      P A  + ++I    +  +   A  L  +L+  GC   V ++N+++  L 
Sbjct: 309 LFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLG 368

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      AL LFE M           EP++ TY+ IID LC        +      ++  
Sbjct: 369 KKRKVDEALTLFEAMKKD-------AEPNSSTYNIIIDMLC--------MAGKVEEAYMI 413

Query: 267 LNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            ++M  A  FP      L +N   ++D LCK  K + A E+F++  + G  PN VTY  L
Sbjct: 414 RDEMEHAGLFP----NLLTVNI--MVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSL 467

Query: 325 IRGLCNDGQMD----------ETKH-------------------YETVFLLFKRLNSTGL 355
           I GL   G +D          +T H                    E    +FK +N  G 
Sbjct: 468 IDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGC 527

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            PDL   N  ++C  K G V  G  IF  I    F PD  +++ LI  L
Sbjct: 528 QPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGL 576



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 140/313 (44%), Gaps = 25/313 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  F  L   LA+    +  L+L   +  + L PD   YN+ I+CF K G V   +    
Sbjct: 217 VPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFH 276

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      PD V++TS+I  LC   R+ EA  LF ++         + YNT+I G    G
Sbjct: 277 ELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAG 336

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A  L +++     E G  C P  +++++I+  L K+      L       F A+ K
Sbjct: 337 QFENAYKLLDQLK----ERG--CIPSVVSFNSILTCLGKKRKVDEALTL-----FEAMKK 385

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
            A        +     +  +ID LC   K++ A  +   +  AGL PN++T NI++  LC
Sbjct: 386 DA--------EPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLC 437

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                 + K +E  + +F+  +  G  P+  TY  LI+   K G V   + +F  +L + 
Sbjct: 438 ------KAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTG 491

Query: 390 FTPDAVTFTSLIK 402
              + V +TSLI+
Sbjct: 492 HNANPVVYTSLIR 504



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 139/320 (43%), Gaps = 29/320 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP  +++ +L G +A+ +  +  L L +++   G       +  L+    + GRV     
Sbjct: 179 RPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALA 238

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  +  SC  PD V +   I        +  A   F +L+  G + D  +Y ++I  LC
Sbjct: 239 LVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLC 298

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A  LF +M     E  V C   A  Y+T+I            +G+     F  
Sbjct: 299 KAGRLSEAEELFGQMET---ERAVPC---AYAYNTMI------------MGYGSAGQFE- 339

Query: 267 LNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            N       L    C+   ++F  ++  L K  K+  A  LF+++ +    PN  TYNI+
Sbjct: 340 -NAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDA-EPNSSTYNII 397

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I  LC  G+++E       +++   +   GLFP+L T NI+++  CK  +    + +F  
Sbjct: 398 IDMLCMAGKVEEA------YMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFET 451

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
                  P++VT+ SLI  L
Sbjct: 452 ASQRGCNPNSVTYCSLIDGL 471



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 1/150 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + + M+  +   P V ++N L   L K +  +  L  F+ +      P+ YTY+I
Sbjct: 688 DEAYLILEEMMK-KGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSI 746

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  C++ + +  FV    + +    P+ VT+T++I  L     I +A +LF + +  G
Sbjct: 747 LINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANG 806

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEE 220
              D  ++N LI G+      I A ++FEE
Sbjct: 807 GTPDAASFNALIEGMSHANRAIEAYHVFEE 836



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEAL  F  M  M+ S P   +++IL   L + + Y+     ++ +   GL P+  TY  
Sbjct: 723 NEALICFQSMKEMKCS-PNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTT 781

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I    K+G ++    +  R   +  TPDA +F +LI+ +   +R +EA  +F + R+ G
Sbjct: 782 MIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKG 841

Query: 191 CELDVFTYNTLINGLCRT 208
           C ++V    +L++ L + 
Sbjct: 842 CRINVKACISLLDALNKA 859



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 101/274 (36%), Gaps = 59/274 (21%)

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++   +  R+     V+  + R  F P    +T LI  +    +   A  L  +++  G
Sbjct: 153 LVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVG 212

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            E+ V  + TL+  L R G    AL L +E+       G   EPD + Y+          
Sbjct: 213 YEVGVPLFTTLVRALAREGRVEGALALVDEVK------GSCLEPDIVLYN---------- 256

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                               +C ID   K   + +A + F  L 
Sbjct: 257 ------------------------------------VC-IDCFGKAGNVDMAWKFFHELK 279

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             GL P+ V+Y  +I  LC  G++ E +       LF ++ +    P  Y YN +I  + 
Sbjct: 280 SQGLKPDDVSYTSMIWVLCKAGRLSEAEE------LFGQMETERAVPCAYAYNTMIMGYG 333

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             G+  + + +  ++      P  V+F S++  L
Sbjct: 334 SAGQFENAYKLLDQLKERGCIPSVVSFNSILTCL 367


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 142/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +    L P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYM 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 129/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    KM        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLETAFEYRKKMI----KENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLLKEMQRDGYMPSVVT 418


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 152/338 (44%), Gaps = 32/338 (9%)

Query: 71  NEALCVFDYMLNMRPSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRLNL-TGLFPDRY 126
           ++A+ + D M    PS+   P   S+  + G L + K  + +  L K++   + L PD  
Sbjct: 368 DQAMELIDQM----PSKGCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLLPDHV 423

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           TYN LI    K G       +L    +  F  D V +++++   C E +I +A  L +++
Sbjct: 424 TYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEM 483

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              GC+ DV TY ++++G CR G    A  + ++M   +      C+P+A+TY+T ++GL
Sbjct: 484 FSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHH------CKPNAVTYTTFLNGL 537

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
           C+   S        M+        A  + +V            + GL +  KL  A ++ 
Sbjct: 538 CRNGKSLEARKMMNMSEEEWWTPNAITYSVV------------VHGLRREGKLNEACDVV 585

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           + +   G  PN V  N+L+  LC DG+  E         L K   + G   ++  +  +I
Sbjct: 586 REMIGKGFFPNPVEINLLVHSLCRDGKPREANQ------LLKECMNKGCAVNVVNFTTVI 639

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + FC+   + +   +   +      PD VT+T+LI  L
Sbjct: 640 HGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDAL 677



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 137/317 (43%), Gaps = 30/317 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   L+K  H D  L + +         D+  Y+ +++ +CK G++     +
Sbjct: 420 PDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKEL 479

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +      PD VT+TS++   C   ++ +A  +  ++    C+ +  TY T +NGLCR
Sbjct: 480 VSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCR 539

Query: 208 TGHTIVA---LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
            G ++ A   +N+ EE      E+     P+AITYS ++ GL +E      L  +C    
Sbjct: 540 NGKSLEARKMMNMSEE------EWWT---PNAITYSVVVHGLRREGK----LNEACDVVR 586

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             + K  F  P+       +N   L+  LC+  K + A +L +     G   NVV +  +
Sbjct: 587 EMIGKGFFPNPVE------INL--LVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTV 638

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I G C    +      E    L   +      PD  TY  LI+   K  R+     +  +
Sbjct: 639 IHGFCQKDDL------EAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMK 692

Query: 385 ILPSCFTPDAVTFTSLI 401
           +L     P  VT+ S+I
Sbjct: 693 MLRQGLVPSPVTYRSVI 709



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 141/344 (40%), Gaps = 48/344 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P ++  N     L         L   +R+ L G+ P+  TYN LI  +C + +V     +
Sbjct: 314 PNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAMEL 373

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL-DVFTYNTLINGLC 206
           + ++     +PD V++ +++  LC + R+ E   L  K++     L D  TYN+LI  L 
Sbjct: 374 IDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLS 433

Query: 207 RTGHTIVALNLFEEMAN-----GNGEFGVV------------------------CEPDAI 237
           + GH   AL + +E           E+  +                        C+PD +
Sbjct: 434 KHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVV 493

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           TY++++DG C+            +       KM         +   + +   ++GLC+  
Sbjct: 494 TYTSVLDGFCR------------IGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNG 541

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           K   AR++          PN +TY++++ GL  +G+++E         + + +   G FP
Sbjct: 542 KSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACD------VVREMIGKGFFP 595

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +    N+L++  C+ G+      +    +      + V FT++I
Sbjct: 596 NPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVI 639



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 123/296 (41%), Gaps = 26/296 (8%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
           VL+L ++    G+ P+    N  I+       +        R++     P+ VT+  LIK
Sbjct: 303 VLTLMQK---AGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIK 359

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
             C   ++ +A  L  ++   GC  D  +Y T++  LCR         L ++M   +   
Sbjct: 360 GYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLL 419

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
                PD +TY+++I  L K        G   +       K+ F    V        +  
Sbjct: 420 -----PDHVTYNSLIQMLSKHGH-----GDEALEILQEAEKLRFKVDKV-------EYSA 462

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           ++   CK  K++ A+EL   +   G  P+VVTY  ++ G C  G++D+ K       + +
Sbjct: 463 IVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKK------MMQ 516

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           ++      P+  TY   +N  C+ G+      +        +TP+A+T++ ++  L
Sbjct: 517 QMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGL 572



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +F  +     +    +  LSL   + L    PD  TY  LI+   K  R+     +  
Sbjct: 632 VVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTM 691

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           ++LR    P  VT+ S+I   C + R+ E      K  +         YN +I  LC+ G
Sbjct: 692 KMLRQGLVPSPVTYRSVIHQYCRKGRV-EDLLKLLKKMLLKSRFQT-AYNLVIEKLCKFG 749

Query: 210 HTIVALNLFEEM 221
           +   A +L  E+
Sbjct: 750 YLEEANSLLGEV 761


>gi|414875981|tpg|DAA53112.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
          Length = 574

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 156/369 (42%), Gaps = 69/369 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS---HG 144
           P + +FNI+     KT        + K ++  G+ P   TYN LI+ +CK G+V    H 
Sbjct: 186 PDLFTFNIVISGFCKTGQLRKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHV 245

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             +L  ++++  +PD VTF  LI   C E  I  A  +F ++R  G   +V TYN+L++G
Sbjct: 246 DALLKEMIQAGISPDVVTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSG 305

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVC-------------------------------- 232
           LCR G    ++ L EEM     E G+ C                                
Sbjct: 306 LCREGKVEDSIKLVEEME----ELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRG 361

Query: 233 -EPDAITYSTIIDG---------------------LCKEAGSANFL--GFSCMASFSALN 268
            +P+ ITY+T++DG                     +     + N L  GF+    + +++
Sbjct: 362 MKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVS 421

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
            +        V+   + +  LI  LC   +++ A +L   +   GL P  V YN +I G 
Sbjct: 422 GLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGF 481

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C  G  D    +E    + KR        ++ TYN+ +  FCK+G++    V+   +L  
Sbjct: 482 CEKG--DAQGAHEIRLRMEKRKKRA----NVVTYNVFLKYFCKMGKMDEANVVLNEMLEK 535

Query: 389 CFTPDAVTF 397
              P+ +T+
Sbjct: 536 GLVPNRITY 544



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 145/357 (40%), Gaps = 84/357 (23%)

Query: 88  PPVTSFNILF------GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           P V ++N L       G + K  H D   +L K +   G+ PD  T+N+LIN +CK   +
Sbjct: 221 PSVATYNTLIDGYCKRGQVGKMYHVD---ALLKEMIQAGISPDVVTFNVLINGYCKEPNI 277

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
           +    V   + +     + VT+ SL+  LC E ++ ++  L  ++   G    + T N++
Sbjct: 278 TAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEEMEELGLACILSTMNSV 337

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID----------------- 244
           +NG C+ G  + A    E   +G  + G+  +P+ ITY+T++D                 
Sbjct: 338 LNGFCKKGMMVEA----EGWVDGIAQRGM--KPNVITYNTLVDGYRRLGKMKEAAAAKDA 391

Query: 245 ----GLCKEAGSANFL--GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
               G+     + N L  GF+    + +++ +        V+   + +  LI  LC   +
Sbjct: 392 MAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVLIGALCCKGE 451

Query: 299 LKIARELFQSLPRAGLMP-----------------------------------NVVTYNI 323
           ++ A +L   +   GL P                                   NVVTYN+
Sbjct: 452 VRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNV 511

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
            ++  C  G+MDE        ++   +   GL P+  TY I IN     G +  G+V
Sbjct: 512 FLKYFCKMGKMDEAN------VVLNEMLEKGLVPNRITYEI-INS----GMIEKGYV 557



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 110/282 (39%), Gaps = 62/282 (21%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P  ++ N L+    +  RV          LR   +PD  TF  +I   C   ++ +A  +
Sbjct: 151 PSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKAGDV 210

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN---LFEEMANGNGEFGVVCEPDAITY 239
              +  +G    V TYNTLI+G C+ G      +   L +EM            PD +T+
Sbjct: 211 AKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAG------ISPDVVTF 264

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           + +I+G CKE                                                 +
Sbjct: 265 NVLINGYCKE-----------------------------------------------PNI 277

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A ++FQ + + G+  NVVTYN L+ GLC +G+++++        L + +   GL   L
Sbjct: 278 TAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDS------IKLVEEMEELGLACIL 331

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            T N ++N FCK G +         I      P+ +T+ +L+
Sbjct: 332 STMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLV 373



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 18/221 (8%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G+ P+  TYN L++ + ++G++         +     +P+  T+  LI            
Sbjct: 361 GMKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSV 420

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
           + L  +++  G + DV TYN LI  LC  G    A+ L +EM     E G+  EP  + Y
Sbjct: 421 SGLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMV----EVGL--EPKHVAY 474

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           +TII+G C E G A              +++       + +   + +   +   CK+ K+
Sbjct: 475 NTIINGFC-EKGDAQ-----------GAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKM 522

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
             A  +   +   GL+PN +TY I+  G+   G + +   Y
Sbjct: 523 DEANVVLNEMLEKGLVPNRITYEIINSGMIEKGYVPDISGY 563



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 6/176 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L      ++ + +V  L   +   G+  D  TYN+LI   C  G V     +
Sbjct: 399 PNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKL 458

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     P  V + ++I   C +     A  +  ++       +V TYN  +   C+
Sbjct: 459 LDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCK 518

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
            G    A  +  EM     E G+V  P+ ITY  I  G+ ++    +  G++   S
Sbjct: 519 MGKMDEANVVLNEML----EKGLV--PNRITYEIINSGMIEKGYVPDISGYAADVS 568


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 143/287 (49%), Gaps = 26/287 (9%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K +      S+F  +   GL P   +YN L+N + ++G +  GF +   + 
Sbjct: 127 FNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMH 186

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 187 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 246

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +AL ++++M + +        PD ITY+T+I GLCK+             +   +++M+ 
Sbjct: 247 LALEIYKQMLSQS------LLPDLITYNTLIYGLCKKG--------DLKQAHDLIDEMS- 291

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 292 ---MKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 348

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G
Sbjct: 349 RSVDAEK-------MLREMLSVGLKPDARTYTMIINEFCKKGDVWKG 388



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 136/303 (44%), Gaps = 26/303 (8%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L K K++  V   +K +  +G     Y +NIL++ FCK   +     V   I +    P 
Sbjct: 99  LMKLKYFKLVWGFYKEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPS 158

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V++ +L+        + E   L + +   G + DV+TY+ LINGLC+      A  LF+
Sbjct: 159 VVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 218

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVR 278
           EM       G+V  P+ +T++T+IDG CK       L  +  M S S L  +        
Sbjct: 219 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDL-------- 264

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                + +  LI GLCK   LK A +L   +   GL P+ +TY  LI G C +G +D   
Sbjct: 265 -----ITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLD--- 316

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
              T F   KR+    +  D   Y  LI+  C+ GR      +   +L     PDA T+T
Sbjct: 317 ---TAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYT 373

Query: 399 SLI 401
            +I
Sbjct: 374 MII 376



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 120/262 (45%), Gaps = 19/262 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   ++ +G+ PD YTY++LI
Sbjct: 143 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLI 201

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 202 NGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLL 261

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+ +IDG CKE   
Sbjct: 262 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG------LKPDKITYTALIDGCCKEG-- 313

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 314 ------DLDTAFEHRKRMI----QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 363

Query: 313 GLMPNVVTYNILIRGLCNDGQM 334
           GL P+  TY ++I   C  G +
Sbjct: 364 GLKPDARTYTMIINEFCKKGDV 385



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 1/148 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL ++  ML+ +   P + ++N L   L K         L   +++ GL PD+ TY  LI
Sbjct: 248 ALEIYKQMLS-QSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALI 306

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E R ++A  +  ++   G +
Sbjct: 307 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 366

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEE 220
            D  TY  +IN  C+ G       L +E
Sbjct: 367 PDARTYTMIINEFCKKGDVWKGSKLLKE 394



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 97/250 (38%), Gaps = 57/250 (22%)

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVCEPDAITYSTI--IDGL 246
           + +Y T+I+ LC       A +L + + +  G+      F V+ E      S I    GL
Sbjct: 1   LHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAVILETKGTQRSDIYVFSGL 60

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
                 + FL    +  +    +  F+ P    + +       ++ L K+   K+    +
Sbjct: 61  ITAYLESGFLR-DAIECYRLTREHKFWVPFDTCRKV-------LEHLMKLKYFKLVWGFY 112

Query: 307 QSLPRAGLMPNVVTYNILIRGLCND----------------------------------- 331
           + +  +G   ++  +NIL+   C +                                   
Sbjct: 113 KEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 172

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G +DE       F L   ++++G+ PD+YTY++LIN  CK  ++     +F  +L     
Sbjct: 173 GDLDEG------FRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 226

Query: 392 PDAVTFTSLI 401
           P+ VTFT+LI
Sbjct: 227 PNGVTFTTLI 236


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 140/324 (43%), Gaps = 60/324 (18%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD +      RP V SFN L     +    D    L   ++ TG+ PD YTY++LI
Sbjct: 155 AQMVFDAITKW-SLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +L  +L +   P+ VTFT+LI   C   ++  A  ++ ++   G  
Sbjct: 214 NGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFL 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLCR G    A +L EEM           +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCRRGDLGQARDLVEEMIMKG------LKPDKITYTTLIDGSCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                                                         L+I  EL + + R 
Sbjct: 326 ---------------------------------------------DLEITFELRKRMIRE 340

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
            +  + VTY  LI GLC +G+  + +       + + + + GL PD  TY +++N FCK 
Sbjct: 341 NIRLDEVTYTALISGLCREGRAGDAEK------MLREMLTVGLKPDNGTYTMIMNEFCKT 394

Query: 373 GRVSSGFVIFGRILPSCFTPDAVT 396
           G V +   +   +  +   P  VT
Sbjct: 395 GDVKTASKLLREMQRNGPVPGVVT 418



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 138/302 (45%), Gaps = 24/302 (7%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L K +++  V   +K +   G  P  Y +NIL++ FCK G +    +V   I +    P 
Sbjct: 111 LMKLRYFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPS 170

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V+F +L+        + E   L + +   G + DV+TY+ LINGLC+      A  +  
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLN 230

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM +     G+V  P+ +T++T+IDG CK  G  +      M  +  +    F   L+  
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKN-GKVDL----AMEIYKQMLSQGFLPDLI-- 277

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                 +  LI GLC+   L  AR+L + +   GL P+ +TY  LI G C +G +     
Sbjct: 278 -----TYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDL----- 327

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
            E  F L KR+    +  D  TY  LI+  C+ GR      +   +L     PD  T+T 
Sbjct: 328 -EITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTM 386

Query: 400 LI 401
           ++
Sbjct: 387 IM 388



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 29/142 (20%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-------DETKHY- 340
           +++ L K+   ++    ++ +   G  P++  +NIL+   C +G+M       D    + 
Sbjct: 107 VLEHLMKLRYFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWS 166

Query: 341 ---------------------ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                                +  F L   +++TG+ PD+YTY++LIN  CK  ++    
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEAN 226

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +   +L +   P+ VTFT+LI
Sbjct: 227 EMLNEMLDNGLVPNGVTFTTLI 248


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 154/353 (43%), Gaps = 69/353 (19%)

Query: 53  LKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSL 112
           L ER  S+G+       P+ A+  F  M      R  + SFN L   L K+K  +T  SL
Sbjct: 145 LAERYASNGK-------PHRAVRTFLSMAE-HGIRQDLHSFNTLLDILCKSKRVETAHSL 196

Query: 113 FKRLNLTGLF-PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
            K   LT  F PD  TYNIL N +C + R      VL  +++    P  VT+ +++K   
Sbjct: 197 LK--TLTSRFRPDTVTYNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYF 254

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
             ++I EA   + +++   CE+DV TY T+I+G    G    A  +F EM       GVV
Sbjct: 255 RSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKE----GVV 310

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
             P+  TY+ +I  LCK+               S  N +  +  + R            +
Sbjct: 311 --PNVATYNALIQVLCKKD--------------SVENAVVVFEEMAR------------E 342

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           G+C                    +PNVVTYN++IRGLC+ G M      E      +R+ 
Sbjct: 343 GVC--------------------VPNVVTYNVVIRGLCHVGDM------ERALGFMERMG 376

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             GL   + TYN++I  FC  G V     +FG++      P+  T+  LI  +
Sbjct: 377 EHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAM 429



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 3/140 (2%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ VF+ M       P V ++N++   L      +  L   +R+   GL     TYN++I
Sbjct: 332 AVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVI 391

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR---IMEAAALFTKLRVF 189
             FC  G V     V G++      P+  T+  LI  +    +   ++ A  L   +   
Sbjct: 392 RYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDR 451

Query: 190 GCELDVFTYNTLINGLCRTG 209
           G     FT+N ++NGL  TG
Sbjct: 452 GFLPRKFTFNRVLNGLVITG 471


>gi|255660980|gb|ACU25659.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 376

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 144/315 (45%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V+SFNI+   L        V+ +++ +  +G   D  TY IL++ FC  G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVXEVIXIWELMKXSGFVEDSITYGILVHGFCXNGYIDKSLHVLE 118

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
              +      A  ++++I  LC E+ +  A ++   +   GC+ +   YNTLINGL    
Sbjct: 119 MAEQKGGVLXAFAYSAMINGLCKEANLBRAVSVLNGMIKSGCKPNAHVYNTLINGLVGAS 178

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A+ +F EM        + C P  ITY+T+I+GLCK                  LN 
Sbjct: 179 KFEDAIRVFREMXT------MHCSPTIITYNTLINGLCKNEMFGXAYNLVKELLDKGLNP 232

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
               + +            L+ GLC   K++ A +L+  +   G  P+V  +NILI GLC
Sbjct: 233 GVITYSM------------LMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLC 280

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G+M      +    L+  +N     P+L ++N L+  F K G + +  VI+ RIL + 
Sbjct: 281 SVGKM------QLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNG 334

Query: 390 FTPDAVTFTSLIKIL 404
             PD +++   +K L
Sbjct: 335 LEPDIISYNITLKGL 349



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 135/305 (44%), Gaps = 33/305 (10%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++ IL        + D  L + +     G     + Y+ +IN  CK   +     VL  +
Sbjct: 96  TYGILVHGFCXNGYIDKSLHVLEMAEQKGGVLXAFAYSAMINGLCKEANLBRAVSVLNGM 155

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           ++S   P+A  + +LI  L   S+  +A  +F ++    C   + TYNTLINGLC+    
Sbjct: 156 IKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMXTMHCSPTIITYNTLINGLCKNEMF 215

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A NL +E+ +          P  ITYS ++ GLC +      L       ++ +    
Sbjct: 216 GXAYNLVKELLDKG------LNPGVITYSMLMKGLCLDHKVEKALQL-----WNQVTSKG 264

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F  P V++  +      LI GLC + K+++A  L+  + R    PN+V++N L+ G   D
Sbjct: 265 FK-PDVQMHNI------LIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKD 317

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G +          +++ R+   GL PD+ +YNI +   C   R+S   +         F 
Sbjct: 318 GDI------RNALVIWARILRNGLEPDIISYNITLKGLCSCNRISDAIL---------FL 362

Query: 392 PDAVT 396
            DAVT
Sbjct: 363 HDAVT 367



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 142/319 (44%), Gaps = 36/319 (11%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D    ++K +  + + PD   YN ++N + +  ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRXXKIKDCF-ELWEMMGSEGNRSVSSFNIM 65

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           ++ L    ++ E   ++  ++  G   D  TY  L++G C  G+   +L++  EMA   G
Sbjct: 66  MRGLFDNGKVXEVIXIWELMKXSGFVEDSITYGILVHGFCXNGYIDKSLHVL-EMAEQKG 124

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSA-------NFLGFSCMASFSALNKMA-------- 271
             GV+    A  YS +I+GLCKEA            +   C  +    N +         
Sbjct: 125 --GVLX---AFAYSAMINGLCKEANLBRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASK 179

Query: 272 ------FYFPLVRVQC--LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
                  +  +  + C    + +  LI+GLCK      A  L + L   GL P V+TY++
Sbjct: 180 FEDAIRVFREMXTMHCSPTIITYNTLINGLCKNEMFGXAYNLVKELLDKGLNPGVITYSM 239

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++GLC D ++      E    L+ ++ S G  PD+  +NILI+  C +G++     ++ 
Sbjct: 240 LMKGLCLDHKV------EKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYF 293

Query: 384 RILPSCFTPDAVTFTSLIK 402
            +      P+ V+  +L++
Sbjct: 294 DMNRWKCAPNLVSHNTLME 312



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 110/260 (42%), Gaps = 54/260 (20%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           B A+ V + M+     +P    +N L   L     ++  + +F+ +      P   TYN 
Sbjct: 146 BRAVSVLNGMIK-SGCKPNAHVYNTLINGLVGASKFEDAIRVFREMXTMHCSPTIITYNT 204

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK       + ++  +L     P  +T++ L+K LC + ++ +A  L+ ++   G
Sbjct: 205 LINGLCKNEMFGXAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKG 264

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV  +N LI+GLC  G   +AL+L+ +M          C P+ ++++T+++G  K+ 
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWK------CAPNLVSHNTLMEGFYKDG 318

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              N                                               A  ++  + 
Sbjct: 319 DIRN-----------------------------------------------ALVIWARIL 331

Query: 311 RAGLMPNVVTYNILIRGLCN 330
           R GL P++++YNI ++GLC+
Sbjct: 332 RNGLEPDIISYNITLKGLCS 351



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V   NIL   L         LSL+  +N     P+  ++N L+  F K G + +  V
Sbjct: 266 KPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALV 325

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           +  RILR+   PD +++   +K LC+ +RI +A
Sbjct: 326 IWARILRNGLEPDIISYNITLKGLCSCNRISDA 358



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 49/275 (17%), Positives = 93/275 (33%), Gaps = 60/275 (21%)

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G +     V   I+ S  +PDAV + +++       +I +   L+  +   G    V
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRXXKIKDCFELWEMMGSEG-NRSV 59

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            ++N ++ GL   G     + ++E M       G V   D+ITY                
Sbjct: 60  SSFNIMMRGLFDNGKVXEVIXIWELMKXS----GFV--EDSITYGI-------------- 99

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                                            L+ G C    +  +  + +   + G +
Sbjct: 100 ---------------------------------LVHGFCXNGYIDKSLHVLEMAEQKGGV 126

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
                Y+ +I GLC +  +B          +   +  +G  P+ + YN LIN      + 
Sbjct: 127 LXAFAYSAMINGLCKEANLBRA------VSVLNGMIKSGCKPNAHVYNTLINGLVGASKF 180

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFF 410
                +F  +     +P  +T+ +LI  L  N  F
Sbjct: 181 EDAIRVFREMXTMHCSPTIITYNTLINGLCKNEMF 215


>gi|13324802|gb|AAK18850.1|AC082645_20 unknown protein [Oryza sativa Japonica Group]
          Length = 825

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 159/339 (46%), Gaps = 26/339 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           I S  P  A+     +L +    PPV + N L   L+K   YD    +F  ++  GL  +
Sbjct: 165 IASPDPISAVPAIRRLLPIASHPPPVRATNRLLLALSKENLYDDFRHVFGEMSRRGLPSN 224

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSC--FTPDAVTFTSLIKDLCAESRIMEAAAL 182
              YNI I+ F K  R+     +   +  +     PD  T  SLI+ L   +R+ +A  +
Sbjct: 225 IRFYNICIHAFGKWRRLDMSLKLFAAMKTASPPLVPDICTHNSLIRALVVGARVADALVV 284

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           + +++ FG E DVFTY  +++G C++     AL LF+EM    G +GV  + DA+ Y+++
Sbjct: 285 YDEMKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEM---RGSYGV--KGDAVVYNSL 339

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR--VQCLCLNFLCLIDGLCKISKLK 300
           +DGL K    A  L  +C           F+  +V   +QC       +IDGL K  + +
Sbjct: 340 LDGLFK----AKKLDEAC----------GFFETMVADGIQCSASTHNTVIDGLFKNGRAE 385

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A  LF  L R G + + + Y+I++R  C +G+ D+    E V L+ K +   G   DL 
Sbjct: 386 AACRLFYDLRRKGQLLDGIAYSIMVREFCKEGKGDQVA--EAVELM-KEMEERGFAVDLV 442

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
           T   L+  F K  R      I   I  S   PDA+ + S
Sbjct: 443 TVTSLLIGFNKSRRWDLEEQIVKFIRDSSVLPDAIRWKS 481



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 33/225 (14%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           DA    + +    A+ ++  A  LF      G +   +TYN+L+    + G+      + 
Sbjct: 574 DADMVNTYMSIFLAKGKLSVACKLFEIFTTLGRKGTSYTYNSLMTSFVKKGYLKQVWAIL 633

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
            E        G +C  D  TY+ II GL  + G A   G    +  S L+K   Y  +V 
Sbjct: 634 HERG------GQLCPNDIATYNLIIQGLG-QMGKAEVAG----SIISELSKKGVYMDIVM 682

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                  +  LI+ L K  K+  A  L + +   G+ P+VVT+N LI      G++ E  
Sbjct: 683 -------YNTLINQLGKAGKVDEANSLLEQIIGRGIKPDVVTFNTLININAKAGRLKEAD 735

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILI---------NCFCKIGR 374
            Y       +++ + G+ P+  T  IL+         +C  K+G 
Sbjct: 736 KY------LRKMIAEGIAPNYATETILLIRMIVELIDDCIEKLGE 774



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +I GL ++ K ++A  +   L + G+  ++V YN LI  L   G++DE         L +
Sbjct: 651 IIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKAGKVDEANS------LLE 704

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++   G+ PD+ T+N LIN   K GR+        +++     P+  T T L+
Sbjct: 705 QIIGRGIKPDVVTFNTLININAKAGRLKEADKYLRKMIAEGIAPNYATETILL 757



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 11/130 (8%)

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           YTYN L+  F K G +   + +L          D  T+  +I+ L    +   A ++ ++
Sbjct: 611 YTYNSLMTSFVKKGYLKQVWAILHERGGQLCPNDIATYNLIIQGLGQMGKAEVAGSIISE 670

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID- 244
           L   G  +D+  YNTLIN L + G    A +L E++       G   +PD +T++T+I+ 
Sbjct: 671 LSKKGVYMDIVMYNTLINQLGKAGKVDEANSLLEQI------IGRGIKPDVVTFNTLINI 724

Query: 245 ----GLCKEA 250
               G  KEA
Sbjct: 725 NAKAGRLKEA 734



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 8/95 (8%)

Query: 311 RAG-LMPN-VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           R G L PN + TYN++I+GL   GQM +    E    +   L+  G++ D+  YN LIN 
Sbjct: 636 RGGQLCPNDIATYNLIIQGL---GQMGKA---EVAGSIISELSKKGVYMDIVMYNTLINQ 689

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
             K G+V     +  +I+     PD VTF +LI I
Sbjct: 690 LGKAGKVDEANSLLEQIIGRGIKPDVVTFNTLINI 724



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 50/113 (44%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++N++   L +    +   S+   L+  G++ D   YN LIN   K G+V     +L 
Sbjct: 645 IATYNLIIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKAGKVDEANSLLE 704

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
           +I+     PD VTF +LI       R+ EA     K+   G   +  T   L+
Sbjct: 705 QIIGRGIKPDVVTFNTLININAKAGRLKEADKYLRKMIAEGIAPNYATETILL 757



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 46/98 (46%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D  TYN++I    +MG+      ++  + +     D V + +LI  L    ++ EA +L 
Sbjct: 644 DIATYNLIIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKAGKVDEANSLL 703

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            ++   G + DV T+NTLIN   + G    A     +M
Sbjct: 704 EQIIGRGIKPDVVTFNTLININAKAGRLKEADKYLRKM 741



 Score = 41.2 bits (95), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 38/84 (45%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           +  +N L   L K    D   SL +++   G+ PD  T+N LIN   K GR+      L 
Sbjct: 680 IVMYNTLINQLGKAGKVDEANSLLEQIIGRGIKPDVVTFNTLININAKAGRLKEADKYLR 739

Query: 150 RILRSCFTPDAVTFTSLIKDLCAE 173
           +++     P+  T T L+  +  E
Sbjct: 740 KMIAEGIAPNYATETILLIRMIVE 763



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN--STGLFPDLY 360
           R +F  + R GL  N+  YNI I       ++D +        LF  +   S  L PD+ 
Sbjct: 210 RHVFGEMSRRGLPSNIRFYNICIHAFGKWRRLDMS------LKLFAAMKTASPPLVPDIC 263

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           T+N LI       RV+   V++  +      PD  T+ +++
Sbjct: 264 THNSLIRALVVGARVADALVVYDEMKSFGIEPDVFTYRAIV 304


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 157/360 (43%), Gaps = 41/360 (11%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  S    LK  C +   GD+  +         D M+ +  + P + +FN L G L +  
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEEL--------MDEMVRVDCA-PNIVTFNTLIGYLCRNG 265

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
            ++ V  +  +++  G  PD   Y  +I+  CK G +     +L R+      P+ V + 
Sbjct: 266 LFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYN 325

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           +++K LC+  R  EA  L +++    C LD  T+N L++  C+ G     + L E+M + 
Sbjct: 326 TVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH 385

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC- 283
                  C PD ITY+T+I+G CKE                 L   A         C C 
Sbjct: 386 G------CMPDVITYTTVINGFCKE----------------GLIDEAVMLLKSMSSCGCK 423

Query: 284 ---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
              +++  ++ GLC   +   A EL   + + G  PN VT+N LI  LC  G +      
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV------ 477

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           E    L K++   G  PDL +Y+ +I+   K G+      +   ++    +P+ + ++S+
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 144/318 (45%), Gaps = 31/318 (9%)

Query: 88  PP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           PP   T F ++ G   + +  D  L +   ++  G  P    Y++++   C+ G   +  
Sbjct: 108 PPNAYTFFPVVRGLCTRGRIADA-LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            VL  +     T D      ++  +C +  + EA  L  KL  FGCE D+ +YN ++ GL
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C          L +EM        V C P+ +T++T+I  LC+                 
Sbjct: 227 CMAKRWGDVEELMDEMVR------VDCAPNIVTFNTLIGYLCRNGLFERV--------HE 272

Query: 266 ALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            L +M+ +   P +R+      +  +IDG+CK   L++A E+   +P  GL PNVV YN 
Sbjct: 273 VLAQMSEHGCTPDIRM------YATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +++GLC+  +  E +       L   +       D  T+NIL++ FC+ G V     +  
Sbjct: 327 VLKGLCSAERWKEAEE------LLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLE 380

Query: 384 RILPSCFTPDAVTFTSLI 401
           ++L     PD +T+T++I
Sbjct: 381 QMLSHGCMPDVITYTTVI 398



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 151/351 (43%), Gaps = 27/351 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPS---RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           I  I     L V + +LN  PS   +P V  +N +   L   + +     L   +     
Sbjct: 293 IDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDC 352

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
             D  T+NIL++ FC+ G V     +L ++L     PD +T+T++I   C E  I EA  
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L   +   GC+ +  +Y  ++ GLC  G  + A  L  +M          C P+ +T++T
Sbjct: 413 LLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG------CPPNPVTFNT 466

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +I+ LCK+             +   L +M        +    +++  +IDGL K  K + 
Sbjct: 467 LINFLCKKGLVEQ--------AIELLKQMLVNGCSPDL----ISYSTVIDGLGKAGKTEE 514

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A EL   +   G+ PN + Y+ +   L  +G++++      V  +F  +  T +  D   
Sbjct: 515 ALELLNVMVNKGISPNTIIYSSIACALSREGRVNK------VIQMFDNIKDTTIRSDAVL 568

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           YN +I+  CK          F  ++ +   P+  T+T LIK L      ++
Sbjct: 569 YNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKE 619



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 154/336 (45%), Gaps = 31/336 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL V D M + +   P    ++++     ++  +   + + + ++  G   D    N++
Sbjct: 129 DALEVLDEM-SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLV 187

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N  C+ G V     +L ++       D V++ +++K LC   R  +   L  ++    C
Sbjct: 188 LNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDC 247

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFE---EMANGNGEFGVVCEPDAITYSTIIDGLCK 248
             ++ T+NTLI  LCR G       LFE   E+     E G  C PD   Y+TIIDG+CK
Sbjct: 248 APNIVTFNTLIGYLCRNG-------LFERVHEVLAQMSEHG--CTPDIRMYATIIDGICK 298

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           E             +   LN+M  Y   ++   +C N   ++ GLC   + K A EL   
Sbjct: 299 EG--------HLEVANEILNRMPSYG--LKPNVVCYNT--VLKGLCSAERWKEAEELLSE 346

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + +     + VT+NIL+   C +G +D       V  L +++ S G  PD+ TY  +IN 
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDR------VIELLEQMLSHGCMPDVITYTTVING 400

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           FCK G +    ++   +      P+ V++T ++K L
Sbjct: 401 FCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 137/313 (43%), Gaps = 28/313 (8%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N++   + +    D  + L ++L   G   D  +YN ++   C   R      ++  ++R
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
               P+ VTF +LI  LC          +  ++   GC  D+  Y T+I+G+C+ GH  V
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMA 271
           A  +   M +    +G+  +P+ + Y+T++ GLC  +    A  L          L+ + 
Sbjct: 305 ANEILNRMPS----YGL--KPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVT 358

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F                L+D  C+   +    EL + +   G MP+V+TY  +I G C +
Sbjct: 359 FNI--------------LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKE 404

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G +DE        +L K ++S G  P+  +Y I++   C  GR      +  +++     
Sbjct: 405 GLIDEA------VMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCP 458

Query: 392 PDAVTFTSLIKIL 404
           P+ VTF +LI  L
Sbjct: 459 PNPVTFNTLINFL 471



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 129/273 (47%), Gaps = 31/273 (11%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            +FNIL     +    D V+ L +++   G  PD  TY  +IN FCK G +    ++L  
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +      P+ V++T ++K LC+  R ++A  L +++   GC  +  T+NTLIN LC+ G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 211 TIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL------------- 256
              A+ L ++M  NG       C PD I+YST+IDGL K   +   L             
Sbjct: 477 VEQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 257 ------GFSCMASFSA-LNKMAFYFPLVR---VQCLCLNFLCLIDGLCKISKLKIARELF 306
                   +C  S    +NK+   F  ++   ++   + +  +I  LCK  +   A + F
Sbjct: 530 NTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFF 589

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
             +   G MPN  TY +LI+GL ++G   E + 
Sbjct: 590 AYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 106/299 (35%), Gaps = 78/299 (26%)

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV----------- 213
           +LI+ LC+  R  EAA              V  YN ++ G CR G               
Sbjct: 52  ALIRSLCSAGRTAEAARALADAGDA---AGVVAYNAMVAGYCRAGQLAAARRLAAAVPVP 108

Query: 214 ---------------------ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
                                AL + +EM+         C P    Y  I++  C+  G 
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKG------CAPIPPMYHVILEAACRSGGF 162

Query: 253 ANFLGF--------------SCMASFSA-------------LNKMAFYFPLVRVQCLCLN 285
            N +                +C    +A             L K+AF+     +    ++
Sbjct: 163 RNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADI----VS 218

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  ++ GLC   +     EL   + R    PN+VT+N LI  LC +G       +E V  
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGL------FERVHE 272

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +  +++  G  PD+  Y  +I+  CK G +     I  R+      P+ V + +++K L
Sbjct: 273 VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 145/313 (46%), Gaps = 24/313 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++ +L   L K         +++++   G+FP+ YTYN ++N  CK GR    F V   +
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEM 294

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                + + VT+ +LI  LC E +  EA  +  +++ +    ++ TYNTLI+G C  G  
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKL 354

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             AL+L  ++ +          P  +TY+ ++ G C++  +            S   KM 
Sbjct: 355 GKALSLCRDLKSRG------LSPSLVTYNVLVSGFCRKGDT------------SGAAKMV 396

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
                  ++   + +  LID   +   ++ A +L  S+   GL+P+V TY++LI G C  
Sbjct: 397 KEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIK 456

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           GQM+E         LFK +    L P+   YN +I  +CK G       +F  +      
Sbjct: 457 GQMNEASR------LFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELA 510

Query: 392 PDAVTFTSLIKIL 404
           P+  +++ LI++L
Sbjct: 511 PNVASYSYLIRVL 523



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 150/344 (43%), Gaps = 86/344 (25%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D Y++ I+I   C+ G +   F +L  +    F+P+ V +T+LI   C +  I +A  LF
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 184 TKLRVFGCELDVFTYNTLING-----------------------------------LCRT 208
            ++  FG   + +TY  LI+G                                   LC+ 
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKD 281

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE--AGSANFLGFSCMASFSA 266
           G T  A  +F+EM     E GV C  + +TY+T+I GLC+E  A  AN            
Sbjct: 282 GRTKDAFKVFDEMR----ERGVSC--NIVTYNTLIGGLCREMKANEAN----------KV 325

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +++M  Y     +    + +  LIDG C + KL  A  L + L   GL P++VTYN+L+ 
Sbjct: 326 MDQMKSYV----INPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVS 381

Query: 327 GLCNDG----------QMDE-------------------TKHYETVFLLFKRLNSTGLFP 357
           G C  G          +M+E                   + + ET   L   +   GL P
Sbjct: 382 GFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVP 441

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           D++TY++LI+ FC  G+++    +F  ++     P+ V + ++I
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMI 485



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 116/263 (44%), Gaps = 23/263 (8%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
            +  NEA  V D M +   + P + ++N L             LSL + L   GL P   
Sbjct: 316 EMKANEANKVMDQMKSYVIN-PNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLV 374

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA-ALFTK 185
           TYN+L++ FC+ G  S    ++  +      P  VT+T LI D  A S  ME A  L + 
Sbjct: 375 TYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI-DTFARSDNMETAIQLRSS 433

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
           +   G   DV TY+ LI+G C  G    A  LF+ M         + EP+ + Y+T+I G
Sbjct: 434 MEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEK------MLEPNEVIYNTMILG 487

Query: 246 LCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
            CKE  S   L  F  M        +A Y  L+RV             LCK  KLK A +
Sbjct: 488 YCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRV-------------LCKERKLKEAED 534

Query: 305 LFQSLPRAGLMPNVVTYNILIRG 327
           L + +  +G+ P+    N++ R 
Sbjct: 535 LVEKMIDSGIDPSDTICNLISRA 557



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 129/298 (43%), Gaps = 38/298 (12%)

Query: 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           Y ++IN + +   +         ++   F P +  F +L+  +   S   +    F + +
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESK 156

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
           +    LDV+++  +I G C  G    + +L  E+     EFG    P+ + Y+T+IDG C
Sbjct: 157 I-KVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELR----EFGF--SPNVVIYTTLIDGCC 209

Query: 248 K--EAGSANFLGFSCMASFSALNKMAFYFPL--------VRVQCLCL------------- 284
           K  E   A  L F  M  F  +     Y  L        ++ Q   +             
Sbjct: 210 KKGEIEKAKDLFFE-MGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNL 268

Query: 285 -NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             + C+++ LCK  + K A ++F  +   G+  N+VTYN LI GLC + + +E       
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANK---- 324

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +  ++ S  + P+L TYN LI+ FC +G++     +   +     +P  VT+  L+
Sbjct: 325 --VMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLV 380


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 142/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +    L P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYM 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 129/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLETAFEYRKRMI----KENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLLKEMQRDGYMPSVVT 418


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 157/360 (43%), Gaps = 41/360 (11%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  S    LK  C +   GD+  +         D M+ +  + P + +FN L G L +  
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEEL--------MDEMVRVDCA-PNIVTFNTLIGYLCRNG 265

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
            ++ V  +  +++  G  PD   Y  +I+  CK G +     +L R+      P+ V + 
Sbjct: 266 LFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYN 325

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           +++K LC+  R  EA  L +++    C LD  T+N L++  C+ G     + L E+M + 
Sbjct: 326 TVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH 385

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC- 283
                  C PD ITY+T+I+G CKE                 L   A         C C 
Sbjct: 386 G------CMPDVITYTTVINGFCKE----------------GLIDEAVMLLKSMSSCGCK 423

Query: 284 ---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
              +++  ++ GLC   +   A EL   + + G  PN VT+N LI  LC  G +      
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV------ 477

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           E    L K++   G  PDL +Y+ +I+   K G+      +   ++    +P+ + ++S+
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 144/318 (45%), Gaps = 31/318 (9%)

Query: 88  PP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           PP   T F ++ G   + +  D  L +   ++  G  P    Y++++   C+ G   +  
Sbjct: 108 PPNAYTFFPVVRGLCTRGRIADA-LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            VL  +     T D      ++  +C +  + EA  L  KL  FGCE D+ +YN ++ GL
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C          L +EM        V C P+ +T++T+I  LC+                 
Sbjct: 227 CMAKRWGDVEELMDEMVR------VDCAPNIVTFNTLIGYLCRNGLFERV--------HE 272

Query: 266 ALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            L +M+ +   P +R+      +  +IDG+CK   L++A E+   +P  GL PNVV YN 
Sbjct: 273 VLAQMSEHGCTPDIRM------YATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +++GLC+  +  E +       L   +       D  T+NIL++ FC+ G V     +  
Sbjct: 327 VLKGLCSAERWKEAEE------LLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLE 380

Query: 384 RILPSCFTPDAVTFTSLI 401
           ++L     PD +T+T++I
Sbjct: 381 QMLSHGCMPDVITYTTVI 398



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 151/352 (42%), Gaps = 27/352 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPS---RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           I  I     L V + +LN  PS   +P V  +N +   L   + +     L   +     
Sbjct: 293 IDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDC 352

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
             D  T+NIL++ FC+ G V     +L ++L     PD +T+T++I   C E  I EA  
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L   +   GC+ +  +Y  ++ GLC  G  + A  L  +M          C P+ +T++T
Sbjct: 413 LLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG------CPPNPVTFNT 466

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +I+ LCK+             +   L +M        +    +++  +IDGL K  K + 
Sbjct: 467 LINFLCKKGLVEQ--------AIELLKQMLVNGCSPDL----ISYSTVIDGLGKAGKTEE 514

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A EL   +   G+ PN + Y+ +   L  +G++++      V  +F  +  T +  D   
Sbjct: 515 ALELLNVMVNKGISPNTIIYSSIACALSREGRVNK------VIQMFDNIKDTTIRSDAVL 568

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           YN +I+  CK          F  ++ +   P+  T+T LIK L      ++ 
Sbjct: 569 YNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEA 620



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 154/336 (45%), Gaps = 31/336 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL V D M + +   P    ++++     ++  +   + + + ++  G   D    N++
Sbjct: 129 DALEVLDEM-SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLV 187

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N  C+ G V     +L ++       D V++ +++K LC   R  +   L  ++    C
Sbjct: 188 LNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDC 247

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFE---EMANGNGEFGVVCEPDAITYSTIIDGLCK 248
             ++ T+NTLI  LCR G       LFE   E+     E G  C PD   Y+TIIDG+CK
Sbjct: 248 APNIVTFNTLIGYLCRNG-------LFERVHEVLAQMSEHG--CTPDIRMYATIIDGICK 298

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           E             +   LN+M  Y   ++   +C N   ++ GLC   + K A EL   
Sbjct: 299 EG--------HLEVANEILNRMPSYG--LKPNVVCYNT--VLKGLCSAERWKEAEELLSE 346

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + +     + VT+NIL+   C +G +D       V  L +++ S G  PD+ TY  +IN 
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDR------VIELLEQMLSHGCMPDVITYTTVING 400

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           FCK G +    ++   +      P+ V++T ++K L
Sbjct: 401 FCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 137/313 (43%), Gaps = 28/313 (8%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N++   + +    D  + L ++L   G   D  +YN ++   C   R      ++  ++R
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
               P+ VTF +LI  LC          +  ++   GC  D+  Y T+I+G+C+ GH  V
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMA 271
           A  +   M +    +G+  +P+ + Y+T++ GLC  +    A  L          L+ + 
Sbjct: 305 ANEILNRMPS----YGL--KPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVT 358

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F                L+D  C+   +    EL + +   G MP+V+TY  +I G C +
Sbjct: 359 FNI--------------LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKE 404

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G +DE        +L K ++S G  P+  +Y I++   C  GR      +  +++     
Sbjct: 405 GLIDEA------VMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCP 458

Query: 392 PDAVTFTSLIKIL 404
           P+ VTF +LI  L
Sbjct: 459 PNPVTFNTLINFL 471



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 129/272 (47%), Gaps = 31/272 (11%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +FNIL     +    D V+ L +++   G  PD  TY  +IN FCK G +    ++L  +
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 P+ V++T ++K LC+  R ++A  L +++   GC  +  T+NTLIN LC+ G  
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 212 IVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL-------------- 256
             A+ L ++M  NG       C PD I+YST+IDGL K   +   L              
Sbjct: 478 EQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPN 530

Query: 257 -----GFSCMASFSA-LNKMAFYFPLVR---VQCLCLNFLCLIDGLCKISKLKIARELFQ 307
                  +C  S    +NK+   F  ++   ++   + +  +I  LCK  +   A + F 
Sbjct: 531 TIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFA 590

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
            +   G MPN  TY +LI+GL ++G   E + 
Sbjct: 591 YMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 106/299 (35%), Gaps = 78/299 (26%)

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV----------- 213
           +LI+ LC+  R  EAA              V  YN ++ G CR G               
Sbjct: 52  ALIRSLCSAGRTAEAARALADAGDA---AGVVAYNAMVAGYCRAGQLAAARRLAAAVPVP 108

Query: 214 ---------------------ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
                                AL + +EM+         C P    Y  I++  C+  G 
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKG------CAPIPPMYHVILEAACRSGGF 162

Query: 253 ANFLGF--------------SCMASFSA-------------LNKMAFYFPLVRVQCLCLN 285
            N +                +C    +A             L K+AF+     +    ++
Sbjct: 163 RNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADI----VS 218

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  ++ GLC   +     EL   + R    PN+VT+N LI  LC +G       +E V  
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGL------FERVHE 272

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +  +++  G  PD+  Y  +I+  CK G +     I  R+      P+ V + +++K L
Sbjct: 273 VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331


>gi|108710734|gb|ABF98529.1| expressed protein [Oryza sativa Japonica Group]
 gi|125545490|gb|EAY91629.1| hypothetical protein OsI_13265 [Oryza sativa Indica Group]
          Length = 771

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 159/339 (46%), Gaps = 26/339 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           I S  P  A+     +L +    PPV + N L   L+K   YD    +F  ++  GL  +
Sbjct: 165 IASPDPISAVPAIRRLLPIASHPPPVRATNRLLLALSKENLYDDFRHVFGEMSRRGLPSN 224

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSC--FTPDAVTFTSLIKDLCAESRIMEAAAL 182
              YNI I+ F K  R+     +   +  +     PD  T  SLI+ L   +R+ +A  +
Sbjct: 225 IRFYNICIHAFGKWRRLDMSLKLFAAMKTASPPLVPDICTHNSLIRALVVGARVADALVV 284

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           + +++ FG E DVFTY  +++G C++     AL LF+EM    G +GV  + DA+ Y+++
Sbjct: 285 YDEMKSFGIEPDVFTYRAIVDGCCKSFRMDDALRLFQEM---RGSYGV--KGDAVVYNSL 339

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR--VQCLCLNFLCLIDGLCKISKLK 300
           +DGL K    A  L  +C           F+  +V   +QC       +IDGL K  + +
Sbjct: 340 LDGLFK----AKKLDEAC----------GFFETMVADGIQCSASTHNTVIDGLFKNGRAE 385

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A  LF  L R G + + + Y+I++R  C +G+ D+    E V L+ K +   G   DL 
Sbjct: 386 AACRLFYDLRRKGQLLDGIAYSIMVREFCKEGKGDQVA--EAVELM-KEMEERGFAVDLV 442

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
           T   L+  F K  R      I   I  S   PDA+ + S
Sbjct: 443 TVTSLLIGFNKSRRWDLEEQIVKFIRDSSVLPDAIRWKS 481



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 88/208 (42%), Gaps = 24/208 (11%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           DA    + +    A+ ++  A  LF      G +   +TYN+L+    + G+      + 
Sbjct: 574 DADMVNTYMSIFLAKGKLSVACKLFEIFTTLGRKGTSYTYNSLMTSFVKKGYLKQVWAIL 633

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
            E        G +C  D  TY+ II GL  + G A   G    +  S L+K   Y  +V 
Sbjct: 634 HERG------GQLCPNDIATYNLIIQGLG-QMGKAEVAG----SIISELSKKGVYMDIVM 682

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                  +  LI+ L K  K+  A  L + +   G+ P+VVT+N LI      G++ E  
Sbjct: 683 -------YNTLINQLGKAGKVDEANSLLEQIIGRGIKPDVVTFNTLININAKAGRLKEAD 735

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILI 366
            Y       +++ + G+ P+  T  IL+
Sbjct: 736 KY------LRKMIAEGIAPNYATETILV 757



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 10/124 (8%)

Query: 282 LCLNFLC----LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           LC N +     +I GL ++ K ++A  +   L + G+  ++V YN LI  L   G++DE 
Sbjct: 640 LCPNDIATYNLIIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKAGKVDEA 699

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   L +++   G+ PD+ T+N LIN   K GR+        +++     P+  T 
Sbjct: 700 NS------LLEQIIGRGIKPDVVTFNTLININAKAGRLKEADKYLRKMIAEGIAPNYATE 753

Query: 398 TSLI 401
           T L+
Sbjct: 754 TILV 757



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 11/130 (8%)

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           YTYN L+  F K G +   + +L          D  T+  +I+ L    +   A ++ ++
Sbjct: 611 YTYNSLMTSFVKKGYLKQVWAILHERGGQLCPNDIATYNLIIQGLGQMGKAEVAGSIISE 670

Query: 186 LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID- 244
           L   G  +D+  YNTLIN L + G    A +L E++       G   +PD +T++T+I+ 
Sbjct: 671 LSKKGVYMDIVMYNTLINQLGKAGKVDEANSLLEQI------IGRGIKPDVVTFNTLINI 724

Query: 245 ----GLCKEA 250
               G  KEA
Sbjct: 725 NAKAGRLKEA 734



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 8/95 (8%)

Query: 311 RAG-LMPN-VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           R G L PN + TYN++I+GL   GQM +    E    +   L+  G++ D+  YN LIN 
Sbjct: 636 RGGQLCPNDIATYNLIIQGL---GQMGKA---EVAGSIISELSKKGVYMDIVMYNTLINQ 689

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
             K G+V     +  +I+     PD VTF +LI I
Sbjct: 690 LGKAGKVDEANSLLEQIIGRGIKPDVVTFNTLINI 724



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 50/113 (44%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++N++   L +    +   S+   L+  G++ D   YN LIN   K G+V     +L 
Sbjct: 645 IATYNLIIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKAGKVDEANSLLE 704

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
           +I+     PD VTF +LI       R+ EA     K+   G   +  T   L+
Sbjct: 705 QIIGRGIKPDVVTFNTLININAKAGRLKEADKYLRKMIAEGIAPNYATETILV 757



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 46/98 (46%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D  TYN++I    +MG+      ++  + +     D V + +LI  L    ++ EA +L 
Sbjct: 644 DIATYNLIIQGLGQMGKAEVAGSIISELSKKGVYMDIVMYNTLINQLGKAGKVDEANSLL 703

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            ++   G + DV T+NTLIN   + G    A     +M
Sbjct: 704 EQIIGRGIKPDVVTFNTLININAKAGRLKEADKYLRKM 741



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN--STGLFPDLY 360
           R +F  + R GL  N+  YNI I       ++D +        LF  +   S  L PD+ 
Sbjct: 210 RHVFGEMSRRGLPSNIRFYNICIHAFGKWRRLDMS------LKLFAAMKTASPPLVPDIC 263

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           T+N LI       RV+   V++  +      PD  T+ +++
Sbjct: 264 THNSLIRALVVGARVADALVVYDEMKSFGIEPDVFTYRAIV 304


>gi|50582688|gb|AAT78758.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|108709716|gb|ABF97511.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1025

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 153/359 (42%), Gaps = 63/359 (17%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N +     K     + L +   +   G+  D YTYNI+I+  CK+ R +  +++
Sbjct: 262 PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLL 321

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L R+     TPD  ++ +LI     E +I  A  +F ++     +  V TY  LI+G CR
Sbjct: 322 LKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCR 381

Query: 208 TGHTIVALNLFEEMA--------NGNGEFGVVC------EPDAITYSTII-DGLCKEAGS 252
            G T  A  +  EM             +  + C      +PD ITYS +I +G+  EA  
Sbjct: 382 NGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDVITYSALINEGMIAEA-- 439

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                           +   Y   +++     +F C+ID  C+   +  A  ++ ++ R 
Sbjct: 440 ---------------EQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRH 484

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK------------------------ 348
           G  P++ TY  L+RGLC  G + + K +  V+LL K                        
Sbjct: 485 GWPPDICTYGSLLRGLCQGGHLVQAKEF-MVYLLEKACAIDEKTLNTLLVGICKHGTLDE 543

Query: 349 ------RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                 ++ +  + PD YTY IL++ FCK G+V    ++   +L     PD + +T L+
Sbjct: 544 ALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLL 602



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 152/363 (41%), Gaps = 59/363 (16%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           + N L   + K    D  L L +++    + PD YTY IL++ FCK G+V    ++L  +
Sbjct: 527 TLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMM 586

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV-FGCELDVFTYNTLINGLCRTGH 210
           L     PD + +T L+  L  E ++  A+ +F ++    G   D   YN+++NG  + G 
Sbjct: 587 LEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQ 646

Query: 211 ----TIVALNLFE-EMANGNGEFGVV------------------------CEPDAITYST 241
                 +  N+ E E+   +  + ++                         +PD +TY  
Sbjct: 647 INEIERLMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRL 706

Query: 242 IIDGLCK----------------EAGSANFLGFSCM-ASFSALNKMA------FYFPLVR 278
           +I GLC+                E    + L F  +  +FS  +KM+       Y   + 
Sbjct: 707 LIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWLH 766

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           +      ++ +++GL + + L+ + E+   +  +GL P    Y  LI   C  G +D   
Sbjct: 767 MSPSSKTYVAMVNGLIRKNWLQQSYEILHDMVESGLQPKHTHYIALINAKCRVGDID--- 823

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                F L + + + G+ P     + ++   CK G+V    ++F  I+ +   P   TFT
Sbjct: 824 ---GAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFT 880

Query: 399 SLI 401
           +L+
Sbjct: 881 TLM 883



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 139/323 (43%), Gaps = 26/323 (8%)

Query: 80  MLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK 137
           M NM  +   P   S+NIL     K       L L++ +   G+ PD  TY +LI   C+
Sbjct: 654 MRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCE 713

Query: 138 MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFT 197
            G +      L +++     PD + F  LIK    +S++  A  LF+ ++         T
Sbjct: 714 YGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSSKT 773

Query: 198 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
           Y  ++NGL R      +  +  +M     E G+  +P    Y  +I+  C+  G  +   
Sbjct: 774 YVAMVNGLIRKNWLQQSYEILHDMV----ESGL--QPKHTHYIALINAKCR-VGDIDG-A 825

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
           F       AL       P    +        ++ GLCK  K++ A  +F S+ RAG++P 
Sbjct: 826 FELKEDMKALG----VVPSEVAES------SIVRGLCKCGKVEEAIIVFSSIMRAGMVPT 875

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           + T+  L+ GLC + ++D+  H      L + + S GL  D+ TYN+LI   C    +  
Sbjct: 876 IATFTTLMHGLCKEFKIDDAFH------LKQLMESCGLKVDVVTYNVLITGLCNKKCICD 929

Query: 378 GFVIFGRILPSCFTPDAVTFTSL 400
              ++  +      P+  T+ +L
Sbjct: 930 ALDLYEEMKSKGLLPNITTYITL 952



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/415 (21%), Positives = 170/415 (40%), Gaps = 83/415 (20%)

Query: 62  EGDITSITPNE---ALCVFDYMLNMRPSRPPVTSFNILF--GCLAKTKHYDTVLSLFKRL 116
           E  IT + P E   A  +   ML      P V +++ L   G +A+ + +   +S  K  
Sbjct: 394 EMQITGVRPREVSKAKQILKCML-ADGIDPDVITYSALINEGMIAEAEQFKQYMSRMK-- 450

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
               +  D  ++N +I+ +C+ G V   F V   ++R  + PD  T+ SL++ LC    +
Sbjct: 451 ----ISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHL 506

Query: 177 MEAAALFTKLRVFGCELD-----------------------------------VFTYNTL 201
           ++A      L    C +D                                    +TY  L
Sbjct: 507 VQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTIL 566

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL--------------- 246
           ++G C+ G  + AL L + M     E G+V  PD I Y+ +++GL               
Sbjct: 567 LDGFCKRGKVVPALILLQMML----EKGLV--PDTIAYTCLLNGLVNEGQVKAASYMFQE 620

Query: 247 --CKEAGSANFLGFSCM-------ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
             CKE   A+ + ++ M          + + ++        V     ++  L+ G  K  
Sbjct: 621 IICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKG 680

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           +L     L++ + + G+ P+ VTY +LI GLC  G +      E      +++   G+FP
Sbjct: 681 QLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLI------EIAVKFLEKMVLEGVFP 734

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           D   ++ILI  F +  ++S+   +F  +     +P + T+ +++  L   ++ +Q
Sbjct: 735 DNLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSSKTYVAMVNGLIRKNWLQQ 789



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 126/294 (42%), Gaps = 35/294 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   ++ +L   L +    +  +   +++ L G+FPD   ++ILI  F +  ++S+   
Sbjct: 698 KPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQ 757

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +     +P + T+ +++  L  ++ + ++  +   +   G +     Y  LIN  C
Sbjct: 758 LFSYMKWLHMSPSSKTYVAMVNGLIRKNWLQQSYEILHDMVESGLQPKHTHYIALINAKC 817

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCM--- 261
           R G    A  L E+M       GVV  P  +  S+I+ GLCK  +   A  +  S M   
Sbjct: 818 RVGDIDGAFELKEDMK----ALGVV--PSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAG 871

Query: 262 -----ASFSALN-------KMAFYFPLVRVQCLC------LNFLCLIDGLCKISKLKIAR 303
                A+F+ L        K+   F L ++   C      + +  LI GLC    +  A 
Sbjct: 872 MVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDAL 931

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           +L++ +   GL+PN+ TY  L   +   G M + +       L K +   G+ P
Sbjct: 932 DLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEK------LLKDIEDRGIVP 979


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 137/314 (43%), Gaps = 28/314 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++ +L    +     +    LF+ +   G+  D Y Y  +I+C C+ G V    V+  
Sbjct: 299 VVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFD 358

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      P A T+ +LI  +C   ++  A  L  +++  G +L+   +NTLI+G C +G
Sbjct: 359 EMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESG 418

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFSAL 267
               AL L   M           E D   Y++I  GLCK      A  L FS +    + 
Sbjct: 419 MVDEALRLQVVMEKKG------LESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSP 472

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N M+              F  LID  CK      A+ +F+ +   G +PN++TYN+LI G
Sbjct: 473 NTMS--------------FTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDG 518

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
               G M E         L   L + GL PD+YT   LI+  C  G+V     +F  +  
Sbjct: 519 YSKRGNMKEAHK------LKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQ 572

Query: 388 SCFTPDAVTFTSLI 401
               P+ VT+T++I
Sbjct: 573 RGLVPNVVTYTAMI 586



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 137/318 (43%), Gaps = 36/318 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F+ M   +     V  +  +  C  ++ +    L LF  +   GL P  +TY  L
Sbjct: 317 EAQRLFEEMRE-KGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGAL 375

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK G++    +++  +       + V F +LI   C    + EA  L   +   G 
Sbjct: 376 IHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGL 435

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           E DVF YN++ +GLC+      A  L   M     E GV   P+ ++++T+ID  CKE  
Sbjct: 436 ESDVFAYNSIASGLCKLNRKDEAKGLLFSMV----ERGV--SPNTMSFTTLIDIYCKEGN 489

Query: 252 ---------------------SANFL--GFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
                                + N L  G+S   +    +K+        +         
Sbjct: 490 FVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTS 549

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LI G C   K+ +A +LF  +P+ GL+PNVVTY  +I GL  DG+ +E       F L+ 
Sbjct: 550 LIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEA------FKLYD 603

Query: 349 RLNSTGLFPDLYTYNILI 366
            +  TGL PD   Y+ L+
Sbjct: 604 EMKETGLTPDDTVYSSLV 621



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 148/338 (43%), Gaps = 41/338 (12%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK---MGRVSHGFV 146
           V S  I+   L K    +    L   +   G+  +  TYN  I  + K   +G V+    
Sbjct: 229 VYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILT 288

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++ +   +C   + VT+T LI       +I EA  LF ++R  G E DV+ Y ++I+  C
Sbjct: 289 LMEKEGVAC---NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNC 345

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASF 264
           R+G+   AL LF+EM +     G++  P A TY  +I G+CK  +  +A  L        
Sbjct: 346 RSGNVKRALVLFDEMTDK----GLI--PSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKG 399

Query: 265 SALNKMAF------------YFPLVRVQCL---------CLNFLCLIDGLCKISKLKIAR 303
             LN + F                +R+Q +            +  +  GLCK+++   A+
Sbjct: 400 IDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAK 459

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            L  S+   G+ PN +++  LI   C +G   E K       +F+ +   G  P++ TYN
Sbjct: 460 GLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKR------VFREMEEKGNVPNIITYN 513

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +LI+ + K G +     +   +      PD  T TSLI
Sbjct: 514 VLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLI 551



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 132/322 (40%), Gaps = 31/322 (9%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
            L +    D+ L  F+R+    +    Y+  I+++  CK G V  G  ++  +       
Sbjct: 203 ALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKA 262

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           + VT+ + I+       +   A + T +   G   +V TY  LI+G    G    A  LF
Sbjct: 263 NVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLF 322

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
           EEM     E G+  E D   Y++II   C+       L      +   L   A  +    
Sbjct: 323 EEMR----EKGI--EADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYG--- 373

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                     LI G+CK  +++ A+ L   +   G+  N V +N LI G C  G +DE  
Sbjct: 374 ---------ALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEAL 424

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
             + V      +   GL  D++ YN + +  CK+ R      +   ++    +P+ ++FT
Sbjct: 425 RLQVV------MEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFT 478

Query: 399 SLIKI-------LEINSFFRQV 413
           +LI I       +E    FR++
Sbjct: 479 TLIDIYCKEGNFVEAKRVFREM 500



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 6/163 (3%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P   SF  L     K  ++     +F+ +   G  P+  TYN+LI+ + K G +  
Sbjct: 468 RGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKE 527

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   +      PD  T TSLI   C + ++  A  LF ++   G   +V TY  +I+
Sbjct: 528 AHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMIS 587

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           GL + G +  A  L++EM     E G+   PD   YS+++  L
Sbjct: 588 GLSKDGRSEEAFKLYDEMK----ETGLT--PDDTVYSSLVGSL 624


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 149/369 (40%), Gaps = 58/369 (15%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N +   L K      V  L  ++  +GLFP+R TYNIL++ +CK+  +     V
Sbjct: 244 PDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEV 303

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +      PD  T+ ++++ LC E +I EA  L  K+  F    DV TYNTLI+G   
Sbjct: 304 IELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFE 363

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVC----------------------------EPDAIT 238
              +  A  L EEM A G  E GV                               PD  T
Sbjct: 364 HRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFT 423

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF-PLVRVQCL--------------- 282
           Y+T+I+G CK    A             L    F    L+   CL               
Sbjct: 424 YNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKAR 483

Query: 283 -------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                   + +  LI G  K  +   A +L++ +   G++  ++TYN +IRGLC  G+ D
Sbjct: 484 KRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTD 543

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           +             L   GL PD  T NI+I+ +C  G V   F    +++     PD  
Sbjct: 544 QAVDK------LNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIF 597

Query: 396 TFTSLIKIL 404
           T   L++ L
Sbjct: 598 TCNILLRGL 606



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 143/321 (44%), Gaps = 24/321 (7%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +  R  +    + NI+          D   ++  ++  +G  PD +TYN +IN +CK G+
Sbjct: 377 MKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGK 436

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           ++  + ++  + R     D  T  +L+  +C E ++ +A  L  K R  G  LD  TY T
Sbjct: 437 MAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGT 496

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI G  +      AL L+EEM     E G+V     ITY+TII GLC        L    
Sbjct: 497 LIMGYFKDEQADRALKLWEEMK----ETGIVA--TIITYNTIIRGLC--------LSGKT 542

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             +   LN++     LV  +        +I G C    ++ A +    +    L P++ T
Sbjct: 543 DQAVDKLNEL-LEKGLVPDESTSN---IIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFT 598

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
            NIL+RGLC +G +      E    LF    S G   D  TYNI+I+ FCK  R+   F 
Sbjct: 599 CNILLRGLCREGML------EKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFD 652

Query: 381 IFGRILPSCFTPDAVTFTSLI 401
           +   +      PD  T+ +++
Sbjct: 653 LMTEMEGKNLEPDRYTYNAIV 673



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 142/315 (45%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V +FNIL        + +  L L  ++   G  PD  TYN ++   CK  +++    
Sbjct: 208 QPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRD 267

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L ++  S   P+  T+  L+   C    + EAA +   +   G   DV+TYNT++ GLC
Sbjct: 268 LLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLC 327

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A+ L ++M +    F +V  PD +TY+T+IDG  +  GS         A+F  
Sbjct: 328 DEGKIDEAVRLRDKMES----FKLV--PDVVTYNTLIDGCFEHRGSD--------AAFKL 373

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           + +M      V+   +  N   +I   C   K+  A  +   +  +G  P+  TYN +I 
Sbjct: 374 VEEMKARG--VKENGVTHNI--MIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMIN 429

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C  G+M E       + +   +   GL  D +T N L++  C   ++   + +  +  
Sbjct: 430 GYCKAGKMAE------AYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKAR 483

Query: 387 PSCFTPDAVTFTSLI 401
              +  D VT+ +LI
Sbjct: 484 KRGYILDEVTYGTLI 498



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 155/344 (45%), Gaps = 30/344 (8%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVL---SLFKRLNLTGL 121
           + S  P+    +F+ M  +R  RP + + N L   L ++    +++    +F+     G+
Sbjct: 149 VISKQPHLGHQIFNKMKRLR-FRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGV 207

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+  T+NILI+ +C          ++ ++      PD VT+ +++  LC  S++ +   
Sbjct: 208 QPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRD 267

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L  +++  G   +  TYN L++G C+      A  + E M  G G       PD  TY+T
Sbjct: 268 LLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMT-GKGML-----PDVWTYNT 321

Query: 242 IIDGLCKEAGSANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           ++ GLC E      +     M SF  +  +  Y               LIDG  +     
Sbjct: 322 MVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYN-------------TLIDGCFEHRGSD 368

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A +L + +   G+  N VT+NI+I+  C +G++DE  +      +  ++  +G  PD +
Sbjct: 369 AAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASN------VMVKMVESGFSPDCF 422

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           TYN +IN +CK G+++  + +   +       D  T  +L+  +
Sbjct: 423 TYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTM 466



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 115/308 (37%), Gaps = 39/308 (12%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLA----KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           Y L M+  +       + +G L     K +  D  L L++ +  TG+     TYN +I  
Sbjct: 476 YTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRG 535

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            C  G+       L  +L     PD  T   +I   C E  + +A     K+     + D
Sbjct: 536 LCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPD 595

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           +FT N L+ GLCR G     L LF    +           D +TY+ II   CKE    +
Sbjct: 596 IFTCNILLRGLCREGMLEKGLTLFNTWISKGKPM------DTVTYNIIISSFCKERRLED 649

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF-------Q 307
              F  M      N     +           +  ++ GL K  + + A +L        Q
Sbjct: 650 --AFDLMTEMEGKNLEPDRY----------TYNAIVTGLTKAGRTEEAEKLALKFAEKGQ 697

Query: 308 SLPRAGLMPNVVTYNIL----IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            +      P + T +++    I  LC  G+      Y+    LF++    G+  + YTY 
Sbjct: 698 QVKTQDTSPELGTSDMMYSEQISSLCTQGK------YKDAMKLFQQAEQKGVSLNKYTYI 751

Query: 364 ILINCFCK 371
            L++   K
Sbjct: 752 KLMDGLLK 759



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 11/148 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG------F 145
           ++NI+     K +  +    L   +    L PDRYTYN ++    K GR          F
Sbjct: 633 TYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKF 692

Query: 146 VVLGRILRSCFT-PDAVT----FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
              G+ +++  T P+  T    ++  I  LC + +  +A  LF +    G  L+ +TY  
Sbjct: 693 AEKGQQVKTQDTSPELGTSDMMYSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYTYIK 752

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEF 228
           L++GL +   +    +L   M +   +F
Sbjct: 753 LMDGLLKRRKSFTTTSLLPFMVSATIQF 780


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 157/360 (43%), Gaps = 41/360 (11%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  S    LK  C +   GD+  +         D M+ +  + P + +FN L G L +  
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEEL--------MDEMVRVDCA-PNIVTFNTLIGYLCRNG 265

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
            ++ V  +  +++  G  PD   Y  +I+  CK G +     +L R+      P+ V + 
Sbjct: 266 LFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYN 325

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           +++K LC+  R  EA  L +++    C LD  T+N L++  C+ G     + L E+M + 
Sbjct: 326 TVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH 385

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC- 283
                  C PD ITY+T+I+G CKE                 L   A         C C 
Sbjct: 386 G------CMPDVITYTTVINGFCKE----------------GLIDEAVMLLKSMSSCGCK 423

Query: 284 ---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
              +++  ++ GLC   +   A EL   + + G  PN VT+N LI  LC  G +      
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV------ 477

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           E    L K++   G  PDL +Y+ +I+   K G+      +   ++    +P+ + ++S+
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 144/318 (45%), Gaps = 31/318 (9%)

Query: 88  PP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           PP   T F ++ G   + +  D  L +   ++  G  P    Y++++   C+ G   +  
Sbjct: 108 PPNAYTFFPVVRGLCTRGRIADA-LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            VL  +     T D      ++  +C +  + EA  L  KL  FGCE D+ +YN ++ GL
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C          L +EM        V C P+ +T++T+I  LC+                 
Sbjct: 227 CMAKRWGDVEELMDEMVR------VDCAPNIVTFNTLIGYLCRNGLFERV--------HE 272

Query: 266 ALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            L +M+ +   P +R+      +  +IDG+CK   L++A E+   +P  GL PNVV YN 
Sbjct: 273 VLAQMSEHGCTPDIRM------YATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +++GLC+  +  E +       L   +       D  T+NIL++ FC+ G V     +  
Sbjct: 327 VLKGLCSAERWKEAEE------LLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLE 380

Query: 384 RILPSCFTPDAVTFTSLI 401
           ++L     PD +T+T++I
Sbjct: 381 QMLSHGCMPDVITYTTVI 398



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 151/351 (43%), Gaps = 27/351 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPS---RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           I  I     L V + +LN  PS   +P V  +N +   L   + +     L   +     
Sbjct: 293 IDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDC 352

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
             D  T+NIL++ FC+ G V     +L ++L     PD +T+T++I   C E  I EA  
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L   +   GC+ +  +Y  ++ GLC  G  + A  L  +M          C P+ +T++T
Sbjct: 413 LLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG------CPPNPVTFNT 466

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +I+ LCK+             +   L +M        +    +++  +IDGL K  K + 
Sbjct: 467 LINFLCKKGLVEQ--------AIELLKQMLVNGCSPDL----ISYSTVIDGLGKAGKTEE 514

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A EL   +   G+ PN + Y+ +   L  +G++++      V  +F  +  T +  D   
Sbjct: 515 ALELLNVMVNKGISPNTIIYSSIACALSREGRVNK------VIQMFDNIKDTTIRSDAVL 568

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           YN +I+  CK          F  ++ +   P+  T+T LIK L      ++
Sbjct: 569 YNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKE 619



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 154/336 (45%), Gaps = 31/336 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL V D M + +   P    ++++     ++  +   + + + ++  G   D    N++
Sbjct: 129 DALEVLDEM-SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLV 187

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N  C+ G V     +L ++       D V++ +++K LC   R  +   L  ++    C
Sbjct: 188 LNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDC 247

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFE---EMANGNGEFGVVCEPDAITYSTIIDGLCK 248
             ++ T+NTLI  LCR G       LFE   E+     E G  C PD   Y+TIIDG+CK
Sbjct: 248 APNIVTFNTLIGYLCRNG-------LFERVHEVLAQMSEHG--CTPDIRMYATIIDGICK 298

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           E             +   LN+M  Y   ++   +C N   ++ GLC   + K A EL   
Sbjct: 299 EG--------HLEVANEILNRMPSYG--LKPNVVCYNT--VLKGLCSAERWKEAEELLSE 346

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + +     + VT+NIL+   C +G +D       V  L +++ S G  PD+ TY  +IN 
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDR------VIELLEQMLSHGCMPDVITYTTVING 400

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           FCK G +    ++   +      P+ V++T ++K L
Sbjct: 401 FCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 138/321 (42%), Gaps = 28/321 (8%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N++   + +    D  + L ++L   G   D  +YN ++   C   R      ++  ++R
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
               P+ VTF +LI  LC          +  ++   GC  D+  Y T+I+G+C+ GH  V
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMA 271
           A  +   M +    +G+  +P+ + Y+T++ GLC  +    A  L          L+ + 
Sbjct: 305 ANEILNRMPS----YGL--KPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVT 358

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F                L+D  C+   +    EL + +   G MP+V+TY  +I G C +
Sbjct: 359 FNI--------------LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKE 404

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G +DE        +L K ++S G  P+  +Y I++   C  GR      +  +++     
Sbjct: 405 GLIDEA------VMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCP 458

Query: 392 PDAVTFTSLIKILEINSFFRQ 412
           P+ VTF +LI  L       Q
Sbjct: 459 PNPVTFNTLINFLCKKGLVEQ 479



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 129/273 (47%), Gaps = 31/273 (11%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            +FNIL     +    D V+ L +++   G  PD  TY  +IN FCK G +    ++L  
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +      P+ V++T ++K LC+  R ++A  L +++   GC  +  T+NTLIN LC+ G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 211 TIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL------------- 256
              A+ L ++M  NG       C PD I+YST+IDGL K   +   L             
Sbjct: 477 VEQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 257 ------GFSCMASFSA-LNKMAFYFPLVR---VQCLCLNFLCLIDGLCKISKLKIARELF 306
                   +C  S    +NK+   F  ++   ++   + +  +I  LCK  +   A + F
Sbjct: 530 NTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFF 589

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
             +   G MPN  TY +LI+GL ++G   E + 
Sbjct: 590 AYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 106/299 (35%), Gaps = 78/299 (26%)

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV----------- 213
           +LI+ LC+  R  EAA              V  YN ++ G CR G               
Sbjct: 52  ALIRSLCSAGRTAEAARALADAGDA---AGVVAYNAMVAGYCRAGQLAAARRLAAAVPVP 108

Query: 214 ---------------------ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
                                AL + +EM+         C P    Y  I++  C+  G 
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKG------CAPIPPMYHVILEAACRSGGF 162

Query: 253 ANFLGF--------------SCMASFSA-------------LNKMAFYFPLVRVQCLCLN 285
            N +                +C    +A             L K+AF+     +    ++
Sbjct: 163 RNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADI----VS 218

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  ++ GLC   +     EL   + R    PN+VT+N LI  LC +G       +E V  
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGL------FERVHE 272

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +  +++  G  PD+  Y  +I+  CK G +     I  R+      P+ V + +++K L
Sbjct: 273 VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 157/360 (43%), Gaps = 41/360 (11%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  S    LK  C +   GD+  +         D M+ +  + P + +FN L G L +  
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEEL--------MDEMVRVDCA-PNIVTFNTLIGYLCRNG 265

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
            ++ V  +  +++  G  PD   Y  +I+  CK G +     +L R+      P+ V + 
Sbjct: 266 LFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYN 325

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           +++K LC+  R  EA  L +++    C LD  T+N L++  C+ G     + L E+M + 
Sbjct: 326 TVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH 385

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC- 283
                  C PD ITY+T+I+G CKE                 L   A         C C 
Sbjct: 386 G------CMPDVITYTTVINGFCKE----------------GLIDEAVMLLKSMSSCGCK 423

Query: 284 ---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
              +++  ++ GLC   +   A EL   + + G  PN VT+N LI  LC  G +      
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV------ 477

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           E    L K++   G  PDL +Y+ +I+   K G+      +   ++    +P+ + ++S+
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 144/318 (45%), Gaps = 31/318 (9%)

Query: 88  PP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           PP   T F ++ G   + +  D  L +   ++  G  P    Y++++   C+ G   +  
Sbjct: 108 PPNAYTFFPVVRGLCTRGRIADA-LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            VL  +     T D      ++  +C +  + EA  L  KL  FGCE D+ +YN ++ GL
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C          L +EM        V C P+ +T++T+I  LC+                 
Sbjct: 227 CMAKRWGDVEELMDEMVR------VDCAPNIVTFNTLIGYLCRNGLFERV--------HE 272

Query: 266 ALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
            L +M+ +   P +R+      +  +IDG+CK   L++A E+   +P  GL PNVV YN 
Sbjct: 273 VLAQMSEHGCTPDIRM------YATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           +++GLC+  +  E +       L   +       D  T+NIL++ FC+ G V     +  
Sbjct: 327 VLKGLCSAERWKEAEE------LLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLE 380

Query: 384 RILPSCFTPDAVTFTSLI 401
           ++L     PD +T+T++I
Sbjct: 381 QMLSHGCMPDVITYTTVI 398



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 151/351 (43%), Gaps = 27/351 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPS---RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           I  I     L V + +LN  PS   +P V  +N +   L   + +     L   +     
Sbjct: 293 IDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDC 352

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
             D  T+NIL++ FC+ G V     +L ++L     PD +T+T++I   C E  I EA  
Sbjct: 353 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVM 412

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L   +   GC+ +  +Y  ++ GLC  G  + A  L  +M          C P+ +T++T
Sbjct: 413 LLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQG------CPPNPVTFNT 466

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +I+ LCK+             +   L +M        +    +++  +IDGL K  K + 
Sbjct: 467 LINFLCKKGLVEQ--------AIELLKQMLVNGCSPDL----ISYSTVIDGLGKAGKTEE 514

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A EL   +   G+ PN + Y+ +   L  +G++++      V  +F  +  T +  D   
Sbjct: 515 ALELLNVMVNKGISPNTIIYSSIACALSREGRVNK------VIQMFDNIKDTTIRSDAVL 568

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           YN +I+  CK          F  ++ +   P+  T+T LIK L      ++
Sbjct: 569 YNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKE 619



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 154/336 (45%), Gaps = 31/336 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL V D M + +   P    ++++     ++  +   + + + ++  G   D    N++
Sbjct: 129 DALEVLDEM-SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLV 187

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N  C+ G V     +L ++       D V++ +++K LC   R  +   L  ++    C
Sbjct: 188 LNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDC 247

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFE---EMANGNGEFGVVCEPDAITYSTIIDGLCK 248
             ++ T+NTLI  LCR G       LFE   E+     E G  C PD   Y+TIIDG+CK
Sbjct: 248 APNIVTFNTLIGYLCRNG-------LFERVHEVLAQMSEHG--CTPDIRMYATIIDGICK 298

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           E             +   LN+M  Y   ++   +C N   ++ GLC   + K A EL   
Sbjct: 299 EG--------HLEVANEILNRMPSYG--LKPNVVCYNT--VLKGLCSAERWKEAEELLSE 346

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + +     + VT+NIL+   C +G +D       V  L +++ S G  PD+ TY  +IN 
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDR------VIELLEQMLSHGCMPDVITYTTVING 400

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           FCK G +    ++   +      P+ V++T ++K L
Sbjct: 401 FCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGL 436



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 138/321 (42%), Gaps = 28/321 (8%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N++   + +    D  + L ++L   G   D  +YN ++   C   R      ++  ++R
Sbjct: 185 NLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVR 244

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
               P+ VTF +LI  LC          +  ++   GC  D+  Y T+I+G+C+ GH  V
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMA 271
           A  +   M +    +G+  +P+ + Y+T++ GLC  +    A  L          L+ + 
Sbjct: 305 ANEILNRMPS----YGL--KPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVT 358

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           F                L+D  C+   +    EL + +   G MP+V+TY  +I G C +
Sbjct: 359 FNI--------------LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKE 404

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G +DE        +L K ++S G  P+  +Y I++   C  GR      +  +++     
Sbjct: 405 GLIDEA------VMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCP 458

Query: 392 PDAVTFTSLIKILEINSFFRQ 412
           P+ VTF +LI  L       Q
Sbjct: 459 PNPVTFNTLINFLCKKGLVEQ 479



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/273 (29%), Positives = 129/273 (47%), Gaps = 31/273 (11%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            +FNIL     +    D V+ L +++   G  PD  TY  +IN FCK G +    ++L  
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +      P+ V++T ++K LC+  R ++A  L +++   GC  +  T+NTLIN LC+ G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 211 TIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL------------- 256
              A+ L ++M  NG       C PD I+YST+IDGL K   +   L             
Sbjct: 477 VEQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 257 ------GFSCMASFSA-LNKMAFYFPLVR---VQCLCLNFLCLIDGLCKISKLKIARELF 306
                   +C  S    +NK+   F  ++   ++   + +  +I  LCK  +   A + F
Sbjct: 530 NTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFF 589

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
             +   G MPN  TY +LI+GL ++G   E + 
Sbjct: 590 AYMVSNGCMPNESTYTMLIKGLASEGLAKEAQE 622



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 106/299 (35%), Gaps = 78/299 (26%)

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV----------- 213
           +LI+ LC+  R  EAA              V  YN ++ G CR G               
Sbjct: 52  ALIRSLCSAGRTAEAARALADAGDA---AGVVAYNAMVAGYCRAGQLAAARRLAAAVPVP 108

Query: 214 ---------------------ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
                                AL + +EM+         C P    Y  I++  C+  G 
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKG------CAPIPPMYHVILEAACRSGGF 162

Query: 253 ANFLGF--------------SCMASFSA-------------LNKMAFYFPLVRVQCLCLN 285
            N +                +C    +A             L K+AF+     +    ++
Sbjct: 163 RNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADI----VS 218

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  ++ GLC   +     EL   + R    PN+VT+N LI  LC +G       +E V  
Sbjct: 219 YNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGL------FERVHE 272

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +  +++  G  PD+  Y  +I+  CK G +     I  R+      P+ V + +++K L
Sbjct: 273 VLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL 331


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 156/333 (46%), Gaps = 27/333 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL + + M+  +   P   ++NI+   L K       + + + +      PD  TYNIL
Sbjct: 335 EALQLLNLMIE-KDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393

Query: 132 INCFCKMGRVSHGFVVLGRILR-SCFT-PDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +   C  G +     +L  +L+ S +T PD +++ +LI  LC E+R+ +A  ++  L   
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
               D  T N L+N   + G    A+ L++++++      +V   D  TY+ +IDG CK 
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSK----IVRNSD--TYTAMIDGFCKT 507

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                  G  C    S L    F            ++ CL+  LCK   L  A  LF+ +
Sbjct: 508 GMLNVAKGLLCKMRVSELQPSVF------------DYNCLLSSLCKEGSLDQAWRLFEEM 555

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            R    P+VV++NI+I G    G +   K  E++ +   R    GL PDL+TY+ LIN F
Sbjct: 556 QRDNNFPDVVSFNIMIDGSLKAGDI---KSAESLLVGMSR---AGLSPDLFTYSKLINRF 609

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            K+G +      F +++ S F PDA    S++K
Sbjct: 610 LKLGYLDEAISFFDKMVDSGFEPDAHICDSVLK 642



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 152/349 (43%), Gaps = 34/349 (9%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD +L  R   P   ++N L     K         +F+ +   G+ P+ YTY  LI+  
Sbjct: 269 LFDEVLE-RGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGL 327

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C +G+      +L  ++     P+AVT+  +I  LC +  + +A  +   ++      D 
Sbjct: 328 CGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDN 387

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE------ 249
            TYN L+ GLC  G    A  L   M   +       +PD I+Y+ +I GLCKE      
Sbjct: 388 ITYNILLGGLCAKGDLDEASKLLYLMLKDSS----YTDPDVISYNALIHGLCKENRLHQA 443

Query: 250 ------------AG---SANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDG 292
                       AG   + N L  S + +      M  +  +   + +     +  +IDG
Sbjct: 444 LDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDG 503

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
            CK   L +A+ L   +  + L P+V  YN L+  LC +G +D+       + LF+ +  
Sbjct: 504 FCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQA------WRLFEEMQR 557

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              FPD+ ++NI+I+   K G + S   +   +  +  +PD  T++ LI
Sbjct: 558 DNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLI 606



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 142/311 (45%), Gaps = 24/311 (7%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N L   L ++++++   S ++++  T  F +  + + L+ C+ +M +    F VL  +L+
Sbjct: 76  NNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLK 135

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
             F  +      L+K LC      +A +L  ++R      DVF+YNT+I G C       
Sbjct: 136 RGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEK 195

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
           AL L  EM  G+G     C    +T+  +ID  CK       +GF        L +M F 
Sbjct: 196 ALELANEM-KGSG-----CSWSLVTWGILIDAFCKAGKMDEAMGF--------LKEMKF- 240

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
              + ++   + +  LI G C   +L   + LF  +   G  P  +TYN LIRG C  GQ
Sbjct: 241 ---MGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQ 297

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           + E         +F+ +   G+ P++YTY  LI+  C +G+      +   ++     P+
Sbjct: 298 LKEASE------IFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPN 351

Query: 394 AVTFTSLIKIL 404
           AVT+  +I  L
Sbjct: 352 AVTYNIIINKL 362



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 142/316 (44%), Gaps = 30/316 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V + NIL   L +       +SL + +    L PD ++YN +I  FC+   +     +  
Sbjct: 142 VYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELAN 201

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +  S  +   VT+  LI   C   ++ EA     +++  G E D+  Y +LI G C  G
Sbjct: 202 EMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCG 261

Query: 210 HTIVALNLFEE-MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                  LF+E +  G+        P AITY+T+I G CK       LG    AS     
Sbjct: 262 ELDRGKALFDEVLERGDS-------PCAITYNTLIRGFCK-------LGQLKEAS----- 302

Query: 269 KMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
              F F + R V+     +  LIDGLC + K K A +L   +      PN VTYNI+I  
Sbjct: 303 -EIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINK 361

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC DG + +    E V L+ KR       PD  TYNIL+   C  G +     +   +L 
Sbjct: 362 LCKDGLVADA--VEIVELMKKRRTR----PDNITYNILLGGLCAKGDLDEASKLLYLMLK 415

Query: 388 -SCFT-PDAVTFTSLI 401
            S +T PD +++ +LI
Sbjct: 416 DSSYTDPDVISYNALI 431



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 148/334 (44%), Gaps = 29/334 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+N +     + K  +  L L   +  +G      T+ ILI+ FCK G++      
Sbjct: 175 PDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGF 234

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +       D V +TSLI+  C    +    ALF ++   G      TYNTLI G C+
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  +FE M     E GV   P+  TY+ +IDGLC    +   L    +      
Sbjct: 295 LGQLKEASEIFEFMI----ERGV--RPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDE 348

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
              A  + ++            I+ LCK   +  A E+ + + +    P+ +TYNIL+ G
Sbjct: 349 EPNAVTYNII------------INKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGG 396

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G +DE    + ++L+ K  +S+   PD+ +YN LI+  CK  R+     I+  ++ 
Sbjct: 397 LCAKGDLDEAS--KLLYLMLK--DSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVE 452

Query: 388 SCFTPDAVT----FTSLIKILEIN---SFFRQVA 414
                D VT      S +K  ++N     ++Q++
Sbjct: 453 KLGAGDRVTTNILLNSTLKAGDVNKAMELWKQIS 486



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 144/315 (45%), Gaps = 26/315 (8%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
            + ++ IL     K    D  +   K +   GL  D   Y  LI  FC  G +  G  + 
Sbjct: 211 SLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALF 270

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
             +L    +P A+T+ +LI+  C   ++ EA+ +F  +   G   +V+TY  LI+GLC  
Sbjct: 271 DEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGV 330

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
           G T  AL L   M   +       EP+A+TY+ II+ LCK+   A+ +            
Sbjct: 331 GKTKEALQLLNLMIEKDE------EPNAVTYNIIINKLCKDGLVADAV------------ 372

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM--PNVVTYNILIR 326
           ++       R +   + +  L+ GLC    L  A +L   + +      P+V++YN LI 
Sbjct: 373 EIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIH 432

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC + ++ +    +   LL ++L +     D  T NIL+N   K G V+    ++ +I 
Sbjct: 433 GLCKENRLHQA--LDIYDLLVEKLGA----GDRVTTNILLNSTLKAGDVNKAMELWKQIS 486

Query: 387 PSCFTPDAVTFTSLI 401
            S    ++ T+T++I
Sbjct: 487 DSKIVRNSDTYTAMI 501



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 8/175 (4%)

Query: 83  MRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           MR S  +P V  +N L   L K    D    LF+ +     FPD  ++NI+I+   K G 
Sbjct: 520 MRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGD 579

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     +L  + R+  +PD  T++ LI        + EA + F K+   G E D    ++
Sbjct: 580 IKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDS 639

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           ++      G T     L +++ + +    +V + +     T++D +C  + + + 
Sbjct: 640 VLKYCISQGETDKLTELVKKLVDKD----IVLDKELTC--TVMDYMCNSSANMDL 688


>gi|449489553|ref|XP_004158346.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g55840-like [Cucumis sativus]
          Length = 1079

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 169/356 (47%), Gaps = 42/356 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
            A+  F  ML +R  +P V + N++   + K      V   FK++  + + P+  ++NIL
Sbjct: 123 HAVNTFSSML-IRGFKPSVYTCNMIMASMVKNCRAHLVWXFFKQMLTSRVCPNVSSFNIL 181

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  C  G++     +L  + R+ + P  V++ +L+   C + R   A  L   +   G 
Sbjct: 182 ISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKGI 241

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA- 250
           + DV TYN  I+ LCR   +     + ++M N       +  P+ ++Y+T+I+G  KE  
Sbjct: 242 QADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNK------MITPNEVSYNTLINGFVKEGK 295

Query: 251 -GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL---------------------- 287
            G A  + F+ M   +    +  Y  L+   C+  NF                       
Sbjct: 296 IGVATRV-FNEMIELNLSPNLITYNILINGYCINGNFEEALRLLDVMEANDVRPNEVTIG 354

Query: 288 CLIDGLCKISKLKIARELFQ--SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
            L++GL K +K  +AR + +  S+ R  L  N +++ ++I GLC +G +DE       F 
Sbjct: 355 TLLNGLYKSAKFDVARNILERYSINRTSL--NCISHTVMIDGLCRNGLLDEA------FQ 406

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L   +   G++PD+ T+++LIN FCK+G ++    +  +I    F P+ V F++LI
Sbjct: 407 LLIEMCKDGVYPDIITFSVLINGFCKVGNLNKAKEVMSKIYREGFVPNNVIFSTLI 462



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 149/334 (44%), Gaps = 31/334 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S+N L     K   +   L L   +   G+  D  TYN+ I+  C+  R + G++V
Sbjct: 208 PTIVSYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLV 267

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++     TP+ V++ +LI     E +I  A  +F ++       ++ TYN LING C 
Sbjct: 268 LKKMRNKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCI 327

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+   AL L + M   +        P+ +T  T+++GL K             A F   
Sbjct: 328 NGNFEEALRLLDVMEAND------VRPNEVTIGTLLNGLYKS------------AKFDVA 369

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             +   + + R    C++   +IDGLC+   L  A +L   + + G+ P+++T+++LI G
Sbjct: 370 RNILERYSINRTSLNCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGVYPDIITFSVLING 429

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  G +++ K       +  ++   G  P+   ++ LI   CK+G V  G   +  +  
Sbjct: 430 FCKVGNLNKAKE------VMSKIYREGFVPNNVIFSTLIYNSCKVGNVYEGMKFYAAMNL 483

Query: 388 SCFTPDAVTFTSLI-------KILEINSFFRQVA 414
           +    D  T  SL+       K++E   F   ++
Sbjct: 484 NGQNADNFTCNSLVASLCENGKLVEAEEFLHHIS 517



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 136/285 (47%), Gaps = 29/285 (10%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           GL P+  T++ +IN +  +G  S  F V  +++     P   T+ SL+K LC      EA
Sbjct: 520 GLVPNSVTFDCIINGYANVGDGSGAFSVFDKMISCGHHPSPFTYGSLLKVLCKGQNFWEA 579

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L  KL      +D  +YNTLI  + ++G+ + A+ LFEEM   N        PD+ TY
Sbjct: 580 RKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNN------ILPDSYTY 633

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKI 296
           + I+ GL +E           + +F  L +      L++ + L LN   + C IDGL K 
Sbjct: 634 TCILSGLIREG--------RLVCAFIFLGR------LMQKEILTLNSIVYTCFIDGLFKA 679

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            + K A  LF+ +   GL  +++  N +  G    G++           L  +  +  + 
Sbjct: 680 GQSKAALYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSASS------LISKTRNKNVI 733

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           P+L T+NIL++ + +   + S F ++  +  S F P+ +T+ SLI
Sbjct: 734 PNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLI 778



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 166/407 (40%), Gaps = 62/407 (15%)

Query: 29  EPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRP--- 85
           EP++ T    +   V  RA L  + K   K   + +  S        +F  +++  P   
Sbjct: 49  EPNHLTHILGITTHVLVRARLYGYAKSILKHLAQKNSGSNF------LFGVLMDTYPLCS 102

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           S P V  F++L     +       ++ F  + + G  P  YT N+++    K  R    +
Sbjct: 103 SNPAV--FDLLIRVYLRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNCRAHLVW 160

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
               ++L S   P+  +F  LI  LC + ++ +A  + T +   G    + +YNTL++  
Sbjct: 161 XFFKQMLTSRVCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWC 220

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G    AL L   M           + D  TY+  ID LC+ + SA   G+  +    
Sbjct: 221 CKKGRFKFALVLIHHMECKG------IQADVCTYNMFIDSLCRNSRSAQ--GYLVLKKMR 272

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             NKM        +    +++  LI+G  K  K+ +A  +F  +    L PN++TYNILI
Sbjct: 273 --NKM--------ITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILI 322

Query: 326 RGLCNDGQMDE-----------------------------TKHYETVFLLFKR--LNSTG 354
            G C +G  +E                             +  ++    + +R  +N T 
Sbjct: 323 NGYCINGNFEEALRLLDVMEANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYSINRTS 382

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L  +  ++ ++I+  C+ G +   F +   +      PD +TF+ LI
Sbjct: 383 L--NCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGVYPDIITFSVLI 427



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 145/367 (39%), Gaps = 63/367 (17%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL + D M      RP   +   L   L K+  +D   ++ +R ++     +  ++ ++
Sbjct: 333 EALRLLDVM-EANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYSINRTSLNCISHTVM 391

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK------ 185
           I+  C+ G +   F +L  + +    PD +TF+ LI   C    + +A  + +K      
Sbjct: 392 IDGLCRNGLLDEAFQLLIEMCKDGVYPDIITFSVLINGFCKVGNLNKAKEVMSKIYREGF 451

Query: 186 -----------------------------LRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
                                        + + G   D FT N+L+  LC  G  + A  
Sbjct: 452 VPNNVIFSTLIYNSCKVGNVYEGMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEA-- 509

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA-GSANFLGFSCMASFSALNKMAFYFP 275
             EE  +     G+V  P+++T+  II+G      GS  F  F  M S         Y  
Sbjct: 510 --EEFLHHISRIGLV--PNSVTFDCIINGYANVGDGSGAFSVFDKMISCGHHPSPFTYGS 565

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
           L++V             LCK      AR+L + L    L  + ++YN LI  +   G + 
Sbjct: 566 LLKV-------------LCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLL 612

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL-PSCFTPDA 394
           E         LF+ +    + PD YTY  +++   + GR+   F+  GR++     T ++
Sbjct: 613 EAVR------LFEEMIQNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKEILTLNS 666

Query: 395 VTFTSLI 401
           + +T  I
Sbjct: 667 IVYTCFI 673



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 127/301 (42%), Gaps = 26/301 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD M++      P T +  L   L K +++     L K+L+   L  D  +YN LI
Sbjct: 544 AFSVFDKMISCGHHPSPFT-YGSLLKVLCKGQNFWEARKLLKKLHCIPLAVDTISYNTLI 602

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVFGC 191
               K G +     +   ++++   PD+ T+T ++  L  E R++ A     +L +    
Sbjct: 603 VEISKSGNLLEAVRLFEEMIQNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKEIL 662

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            L+   Y   I+GL + G +  AL LF+EM     E G+    D I  ++I DG  +   
Sbjct: 663 TLNSIVYTCFIDGLFKAGQSKAALYLFKEME----EKGL--SLDLIALNSITDGYSRMGK 716

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                 FS  +  S          L         F  L+ G  +   +    +L+  + R
Sbjct: 717 V-----FSASSLISKTRNKNVIPNLT-------TFNILLHGYSRGQDIMSCFKLYNLMRR 764

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           +G  PN +TY+ LI GLCN G +      E    + K   +     D  T+N+LI   C+
Sbjct: 765 SGFFPNRLTYHSLILGLCNHGML------ELGIKMLKMFIAESSTIDDLTFNMLIRKCCE 818

Query: 372 I 372
           I
Sbjct: 819 I 819



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 129/325 (39%), Gaps = 30/325 (9%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P +T+FNIL    ++ +   +   L+  +  +G FP+R TY+ LI   C  G +  G  +
Sbjct: 734  PNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLCNHGMLELGIKM 793

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            L   +    T D +TF  LI+  C  + + +   L   + VF   LD  T   + + L R
Sbjct: 794  LKMFIAESSTIDDLTFNMLIRKCCEINDLDKVIDLTHNMEVFRVSLDKDTQKAVTDVLVR 853

Query: 208  TGHTIVALNLF---EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
                +V+ N F    EM       G +  P +  Y T++  +C+              +F
Sbjct: 854  ---RMVSQNYFVFMHEMLKK----GFI--PTSKQYCTMMKRMCRVG--------DIQGAF 896

Query: 265  SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
               ++M      +     C     ++ GL    K++ A  + Q + R   +P   T+  L
Sbjct: 897  KLKDQMVALGISLDDAAEC----AMVRGLALCGKIEEAMWILQRMLRMKKIPTTSTFTTL 952

Query: 325  IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
            +   C      E  + + +   ++      +  D+  YN+LI+  C  G V +    +  
Sbjct: 953  MHVFCKKDNFKEAHNLKILMEHYR------VKLDIVAYNVLISACCANGDVITALDFYEE 1006

Query: 385  ILPSCFTPDAVTFTSLIKILEINSF 409
            I      P+  T+  L+  +    +
Sbjct: 1007 IKQKGLLPNMTTYRVLVSAISTKHY 1031



 Score = 42.0 bits (97), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           ++  + K  +  +    F+ +  + + PNV ++NILI  LC  G++ +  +  T+     
Sbjct: 146 IMASMVKNCRAHLVWXFFKQMLTSRVCPNVSSFNILISVLCVQGKLKKAVNILTM----- 200

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            +   G  P + +YN L++  CK GR     V+   +       D  T+   I  L  NS
Sbjct: 201 -MERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNS 259


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 152/316 (48%), Gaps = 20/316 (6%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           ++P V  +N+L     K +  + V  L+K + L G+ P  YT+N+LI   C    V    
Sbjct: 108 NKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAAR 167

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +   +      P+  TF  L++  C      +   L   +  FG   +   YNT+++  
Sbjct: 168 ELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSF 227

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           CR G    +  + E+M     E G+V  PD +T+++ I  LCKE      L  S + S  
Sbjct: 228 CREGRNDDSEKMVEKMR----EEGLV--PDIVTFNSRISALCKEG---KVLDASRIFSDM 278

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            L++   Y  L R   +  N +  + G CK+  L+ A+ LF+S+     + ++ +YNI +
Sbjct: 279 ELDE---YLGLPRPNSITYNLM--LKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWL 333

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           +GL   G+  E    ETV    K++   G+ P +Y+YNIL++  CK+G +S    I G +
Sbjct: 334 QGLVRHGKFIEA---ETVL---KQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLM 387

Query: 386 LPSCFTPDAVTFTSLI 401
             +   PDAVT+  L+
Sbjct: 388 KRNGVCPDAVTYGCLL 403



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 146/335 (43%), Gaps = 41/335 (12%)

Query: 88  PPVTSFNILFGCLAKT---KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           P + S+NIL   L K        T++ L KR    G+ PD  TY  L++ +C +G+V   
Sbjct: 359 PSIYSYNILMDGLCKLGMLSDAKTIVGLMKR---NGVCPDAVTYGCLLHGYCSVGKVDAA 415

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             +L  ++R+   P+A T   L+  L    RI EA  L  K+   G  LD  T N +++G
Sbjct: 416 KSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDG 475

Query: 205 LCRTGHTIVALNLFEEM--------AN-GNGEFGVV--------CEPDAITYSTIIDGLC 247
           LC +G    A+ + + M         N GN   G+V        C PD ITYST+++GLC
Sbjct: 476 LCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLC 535

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K               F+    +       ++Q   + +   I   CK  K+  A  + +
Sbjct: 536 K------------AGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLK 583

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            + + G   ++ TYN LI GL    Q+ E      +  L   +   G+ P++ TYN  I 
Sbjct: 584 DMEKKGCHKSLETYNSLILGLGIKNQIFE------IHGLMDEMKEKGISPNICTYNTAIQ 637

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             C+  +V     +   ++     P+  +F  LI+
Sbjct: 638 YLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIE 672



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 152/337 (45%), Gaps = 55/337 (16%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + S+NI    L +   +    ++ K++   G+ P  Y+YNIL++  CK+G +S    ++G
Sbjct: 326 LQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVG 385

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            + R+   PDAVT+  L+   C+  ++  A +L  ++    C  + +T N L++ L + G
Sbjct: 386 LMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMG 445

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A  L  +M N  G +G+    D +T + I+DGLC   GS              L+K
Sbjct: 446 RISEAEELLRKM-NEKG-YGL----DTVTCNIIVDGLC---GSGE------------LDK 484

Query: 270 MAFYFPLVRVQC------LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
                  +RV        L  +++ L+D                SL     +P+++TY+ 
Sbjct: 485 AIEIVKGMRVHGSAALGNLGNSYIGLVD---------------DSLIENNCLPDLITYST 529

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L+ GLC  G+  E K+      LF  +    L PD   YNI I+ FCK G++SS F +  
Sbjct: 530 LLNGLCKAGRFAEAKN------LFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLK 583

Query: 384 RILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
            +          T+ SLI       +I EI+    ++
Sbjct: 584 DMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEM 620



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 148/330 (44%), Gaps = 39/330 (11%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD M   +  +P   +F IL     K    D  L L   +   G+ P++  YN +++ F
Sbjct: 169 LFDEMPE-KGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSF 227

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ GR      ++ ++      PD VTF S I  LC E ++++A+ +F+ +     ELD 
Sbjct: 228 CREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDM-----ELDE 282

Query: 196 F---------TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           +         TYN ++ G C+ G    A  LFE +   N +   +      +Y+  + GL
Sbjct: 283 YLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRE-NDDLASLQ-----SYNIWLQGL 336

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            +            + + + L +M        +     ++  L+DGLCK+  L  A+ + 
Sbjct: 337 VRHG--------KFIEAETVLKQMTDK----GIGPSIYSYNILMDGLCKLGMLSDAKTIV 384

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             + R G+ P+ VTY  L+ G C+ G++D  K       L + +      P+ YT NIL+
Sbjct: 385 GLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKS------LLQEMMRNNCLPNAYTCNILL 438

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
           +   K+GR+S    +  ++    +  D VT
Sbjct: 439 HSLWKMGRISEAEELLRKMNEKGYGLDTVT 468



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 110/288 (38%), Gaps = 52/288 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  L          D   SL + +      P+ YT NIL++   KMGR+S    +
Sbjct: 394 PDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEEL 453

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG----------------- 190
           L ++    +  D VT   ++  LC    + +A  +   +RV G                 
Sbjct: 454 LRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDD 513

Query: 191 ------CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
                 C  D+ TY+TL+NGLC+ G    A NLF EM       G   +PD++ Y+  I 
Sbjct: 514 SLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEM------MGEKLQPDSVAYNIFIH 567

Query: 245 GLCKEAG-SANFLGFSCMASFSALNKMAFYFPLV-----RVQCLCLNFL----------- 287
             CK+   S+ F     M        +  Y  L+     + Q   ++ L           
Sbjct: 568 HFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISP 627

Query: 288 ------CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                   I  LC+  K++ A  L   + +  + PNV ++  LI   C
Sbjct: 628 NICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFC 675



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 6/119 (5%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  LI  LC  S +  ARELF  +P  G  PN  T+ IL+RG C  G  D+         
Sbjct: 150 FNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKG------LE 203

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           L   + S G+ P+   YN +++ FC+ GR      +  ++      PD VTF S I  L
Sbjct: 204 LLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISAL 262



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 117/302 (38%), Gaps = 46/302 (15%)

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TY+ L+N  CK GR +    +   ++     PD+V +   I   C + +I  A  
Sbjct: 521 LPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFR 580

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +   +   GC   + TYN+LI GL           L +EM     E G+   P+  TY+T
Sbjct: 581 VLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMK----EKGI--SPNICTYNT 634

Query: 242 IIDGLCK--EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
            I  LC+  +   A  L    M    A N  +F +              LI+  CK+   
Sbjct: 635 AIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKY--------------LIEAFCKVPDF 680

Query: 300 KIARELFQSL-----PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
            +A+E+F++       + GL      Y+++   L   GQ+   K  E +  +  R    G
Sbjct: 681 DMAQEVFETAVSICGQKEGL------YSLMFNELLAAGQL--LKATELLEAVLDRGFELG 732

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL-------EIN 407
            F     Y  L+   CK   +     I  +++   +  D      +I  L       E N
Sbjct: 733 TF----LYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKKEAN 788

Query: 408 SF 409
           SF
Sbjct: 789 SF 790



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 35/167 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +++ L   L K   +    +LF  +    L PD   YNI I+ FCK G++S  F V
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRV 581

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT------- 200
           L  + +        T+ SLI  L  +++I E   L  +++  G   ++ TYNT       
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCE 641

Query: 201 ----------------------------LINGLCRTGHTIVALNLFE 219
                                       LI   C+     +A  +FE
Sbjct: 642 GEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVFE 688



 Score = 46.6 bits (109), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 7/161 (4%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N     L + +  +   +L   +    + P+ +++  LI  FCK+        V
Sbjct: 627 PNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEV 686

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
               +  C   + + ++ +  +L A  ++++A  L   +   G EL  F Y  L+  LC+
Sbjct: 687 FETAVSICGQKEGL-YSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCK 745

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
                VA  +  +M     + G   +P A+    +IDGL K
Sbjct: 746 KDELEVASGILHKMI----DRGYGFDPAALM--PVIDGLGK 780


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 142/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +    L P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYM 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 129/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   ++ +   P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLETAFEYRKRMI----KENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLLKEMQRDGYMPSVVT 418


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 146/334 (43%), Gaps = 60/334 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA   F YM+  +   P + + N +     K    +    L+  +    +    YT+NI
Sbjct: 174 DEAFKCF-YMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNI 232

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++N  CK G++      +G +    F P+ V++ ++I    +   I  A  +   +RV G
Sbjct: 233 MVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKG 292

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            E D +TY +LI+G+C+ G    A  LF++M     E G+V  P+A+TY+T+IDG C + 
Sbjct: 293 IEPDSYTYGSLISGMCKEGRLEEASGLFDKMV----EIGLV--PNAVTYNTLIDGYCNKG 346

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                       +FS  ++M                                        
Sbjct: 347 --------DLERAFSYRDEMV--------------------------------------- 359

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           + G+MP+V TYN+L+  L  +G+M E         + K +   G+ PD  TYNILIN + 
Sbjct: 360 KKGIMPSVSTYNLLVHALFMEGRMGEADD------MIKEMRKKGIIPDAITYNILINGYS 413

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + G     F +   +L     P  VT+TSLI +L
Sbjct: 414 RCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVL 447



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 144/321 (44%), Gaps = 30/321 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   ++  L   + K    +    LF ++   GL P+  TYN LI+ +C  G +   F 
Sbjct: 294 EPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFS 353

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
               +++    P   T+  L+  L  E R+ EA  +  ++R  G   D  TYN LING  
Sbjct: 354 YRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 413

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G+   A +L  EM +         EP  +TY+++I  L +                + 
Sbjct: 414 RCGNAKKAFDLHNEMLSKG------IEPTHVTYTSLIYVLSRR---------------NR 452

Query: 267 LNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           + +    F  +  Q +    + F  ++DG C    ++ A  L + + R  + P+ VT+N 
Sbjct: 453 MKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNT 512

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++G C +G+++E +      +L   +   G+ PD  +YN LI+ + + G +   F +  
Sbjct: 513 LMQGRCREGKVEEAR------MLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRD 566

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +L   F P  +T+ +LIK L
Sbjct: 567 EMLSIGFNPTLLTYNALIKCL 587



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 110/278 (39%), Gaps = 53/278 (19%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V+++N+L   L           + K +   G+ PD  TYNILIN + + G     F +
Sbjct: 365 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDL 424

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF----------- 196
              +L     P  VT+TSLI  L   +R+ EA  LF K+   G   DV            
Sbjct: 425 HNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCA 484

Query: 197 ------------------------TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
                                   T+NTL+ G CR G    A  L +EM           
Sbjct: 485 NGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRG------I 538

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
           +PD I+Y+T+I G  +     +        +F   ++M      +      L +  LI  
Sbjct: 539 KPDHISYNTLISGYGRRGDIKD--------AFRVRDEMLS----IGFNPTLLTYNALIKC 586

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
           LCK  +  +A EL + +   G+ P+  TY  LI G+ N
Sbjct: 587 LCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGN 624



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 7/175 (4%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F+ +L+   S P V  FN +        + +    L K ++   + PD  T+N L
Sbjct: 455 EADDLFEKILDQGVS-PDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTL 513

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   C+ G+V    ++L  + R    PD +++ +LI        I +A  +  ++   G 
Sbjct: 514 MQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGF 573

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              + TYN LI  LC+     +A  L +EM N          PD  TY ++I+G+
Sbjct: 574 NPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKG------ISPDDSTYLSLIEGM 622


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 137/314 (43%), Gaps = 28/314 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++ +L    +     +    LF+ +   G+  D Y Y  +I+C C+ G V    V+  
Sbjct: 295 VVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFD 354

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +      P A T+ +LI  +C   ++  A  L  +++  G +L+   +NTLI+G C +G
Sbjct: 355 EMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESG 414

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFSAL 267
               AL L   M           E D   Y++I  GLCK      A  L FS +    + 
Sbjct: 415 MVDEALRLQVVMEKKG------LESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSP 468

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N M+              F  LID  CK      A+ +F+ +   G +PN++TYN+LI G
Sbjct: 469 NTMS--------------FTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDG 514

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
               G M E         L   L + GL PD+YT   LI+  C  G+V     +F  +  
Sbjct: 515 YSKRGNMKEAHK------LKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQ 568

Query: 388 SCFTPDAVTFTSLI 401
               P+ VT+T++I
Sbjct: 569 RGLVPNVVTYTAMI 582



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 137/319 (42%), Gaps = 36/319 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  +F+ M   +     V  +  +  C  ++ +    L LF  +   GL P  +TY  
Sbjct: 312 EEAQRLFEEMRE-KGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGA 370

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G++    +++  +       + V F +LI   C    + EA  L   +   G
Sbjct: 371 LIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKG 430

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            E DVF YN++ +GLC+      A  L   M     E GV   P+ ++++T+ID  CKE 
Sbjct: 431 LESDVFAYNSIASGLCKLNRKDEAKGLLFSMV----ERGV--SPNTMSFTTLIDIYCKEG 484

Query: 251 G---------------------SANFL--GFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
                                 + N L  G+S   +    +K+        +        
Sbjct: 485 NFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCT 544

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI G C   K+ +A +LF  +P+ GL+PNVVTY  +I GL  DG+ +E       F L+
Sbjct: 545 SLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEA------FKLY 598

Query: 348 KRLNSTGLFPDLYTYNILI 366
             +  TGL PD   Y+ L+
Sbjct: 599 DEMKETGLTPDDTVYSSLV 617



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 153/351 (43%), Gaps = 42/351 (11%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           F  M+N+      V S  I+   L K    +    L   +   G+  +  TYN  I  + 
Sbjct: 213 FRRMVNL-DVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYF 271

Query: 137 K---MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
           K   +G V+    ++ +   +C   + VT+T LI       +I EA  LF ++R  G E 
Sbjct: 272 KRLDLGGVAEILTLMEKEGVAC---NVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEA 328

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAG 251
           DV+ Y ++I+  CR+G+   AL LF+EM +     G++  P A TY  +I G+CK  +  
Sbjct: 329 DVYVYTSIISCNCRSGNVKRALVLFDEMTDK----GLI--PSAHTYGALIHGVCKAGQME 382

Query: 252 SANFLGFSCMASFSALNKMAF------------YFPLVRVQCL---------CLNFLCLI 290
           +A  L          LN + F                +R+Q +            +  + 
Sbjct: 383 AAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIA 442

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
            GLCK+++   A+ L  S+   G+ PN +++  LI   C +G   E K       +F+ +
Sbjct: 443 SGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKR------VFREM 496

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              G  P++ TYN+LI+ + K G +     +   +      PD  T TSLI
Sbjct: 497 EEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLI 547



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 142/349 (40%), Gaps = 32/349 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL  F++M   +       S  +    L +    D+ L  F+R+    +    Y+  I+
Sbjct: 173 EALEAFEHM-EKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIV 231

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G V  G  ++  +       + VT+ + I+       +   A + T +   G 
Sbjct: 232 LDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGV 291

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +V TY  LI+G    G    A  LFEEM     E G+  E D   Y++II   C+   
Sbjct: 292 ACNVVTYTLLIHGFSNIGKIEEAQRLFEEMR----EKGI--EADVYVYTSIISCNCRSGN 345

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
               L      +   L   A  +              LI G+CK  +++ A+ L   +  
Sbjct: 346 VKRALVLFDEMTDKGLIPSAHTYG------------ALIHGVCKAGQMEAAQMLVNEMQG 393

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+  N V +N LI G C  G +DE    + V      +   GL  D++ YN + +  CK
Sbjct: 394 KGIDLNPVIFNTLIDGYCESGMVDEALRLQVV------MEKKGLESDVFAYNSIASGLCK 447

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI-------LEINSFFRQV 413
           + R      +   ++    +P+ ++FT+LI I       +E    FR++
Sbjct: 448 LNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREM 496



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 6/163 (3%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P   SF  L     K  ++     +F+ +   G  P+  TYN+LI+ + K G +  
Sbjct: 464 RGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKE 523

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   +      PD  T TSLI   C + ++  A  LF ++   G   +V TY  +I+
Sbjct: 524 AHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMIS 583

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           GL + G +  A  L++EM     E G+   PD   YS+++  L
Sbjct: 584 GLSKDGRSEEAFKLYDEMK----ETGLT--PDDTVYSSLVGSL 620


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 140/310 (45%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 128 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 187

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI   C ES+  +A  LF ++ V G   +   + TLI+G C+ G   
Sbjct: 188 ASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVD 247

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 248 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDK- 300

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L  A E  + + +     + V Y  LI GLC +G
Sbjct: 301 -----------ITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEG 349

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 350 RSVDAEK-------MLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 402

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 403 PSVVTYNVLM 412



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 131/295 (44%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 144 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 202

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  +      +   +L     P+ V FT+LI   C   R+  A  ++ ++      
Sbjct: 203 NGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 262

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKG------LKPDKITYTTLIDGCCKEG-- 314

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                    ++F    +M         +   + +  LI GLC   +   A ++ + +   
Sbjct: 315 ------DLDSAFEHXKRMI----QENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSV 364

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 365 GLKPDARTYTMIINEFCKKGDVWKGSK------LLKEMQRDGHVPSVVTYNVLMN 413



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+   S P + ++N L   L K         L   ++  GL PD+ TY  LI
Sbjct: 249 AMEIYKQMLSQSLS-PDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLI 307

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E R ++A  +  ++   G +
Sbjct: 308 DGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLK 367

Query: 193 LD-----------------------------------VFTYNTLING 204
            D                                   V TYN L+NG
Sbjct: 368 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 96  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQS------VFD 149

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI
Sbjct: 150 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 202


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 33/324 (10%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            ++N +     K   +   L + + +    +  D YTYNI+I+  C++ R +  F++L R
Sbjct: 261 VTYNTILHWYVKKGRFKAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKR 320

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           + +   TPD  T+ +LI     E +I  A  +F  +        V TY T+I+G CR   
Sbjct: 321 MRKDDLTPDECTYNTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRR 380

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALN 268
              AL++  EM       GV+  P  +TYS +++G CK +  G A +L     +    +N
Sbjct: 381 IDKALSILSEMQIT----GVM--PSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITIN 434

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
           K                   LIDG C++ ++  A+++ +S+   G+ P+V+TY+ LI G+
Sbjct: 435 KTMRTI--------------LIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGM 480

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C   +M ETK       +  R+  +G+ P+   Y  LI  +CK G V      F  I   
Sbjct: 481 CRMAKMHETKE------ILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRR 534

Query: 389 CFTPDAVTFTSLIKILEINSFFRQ 412
               + V   +L     +++F+R+
Sbjct: 535 GLVANPVIHNAL-----LHAFYRE 553



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 157/360 (43%), Gaps = 50/360 (13%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           ALCV + M      +  V ++NI+   L + K       L KR+    L PD  TYN LI
Sbjct: 279 ALCVLEDM-ERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKRMRKDDLTPDECTYNTLI 337

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N F + G+++H   V   +LR    P   T+T++I   C   RI +A ++ +++++ G  
Sbjct: 338 NGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVM 397

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMA---------------NGNGEFGVVC----- 232
               TY+ L+NG C+      A+ L E++                +G  + G +      
Sbjct: 398 PSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEISKAKQI 457

Query: 233 ---------EPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCL 282
                    +PD ITYS +I+G+C+ A         S M     L     Y  L+   C 
Sbjct: 458 LKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLI---CY 514

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
                      CK   +K A + F  + R GL+ N V +N L+     +G + E +H+  
Sbjct: 515 ----------YCKAGYVKEALKHFVDIYRRGLVANPVIHNALLHAFYREGMITEAEHFRQ 564

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
                 R+N   +  D  ++N +I+ +C  G +   F ++  ++   ++P+  T+ +L++
Sbjct: 565 ---YMSRMN---ISFDSVSFNRIIDSYCHRGNIVGAFSVYDDMVRYGYSPNVCTYQNLLR 618



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 141/309 (45%), Gaps = 27/309 (8%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +++L ++ YM+  +  RP   ++ +L   L++    D  +   +++ L G+FPDR  ++I
Sbjct: 803  SKSLYLYKYMVR-KGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDI 861

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            LI  F +  ++ +   V   +     +P + TF+++I  L  +  +  +  +  ++   G
Sbjct: 862  LITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVG 921

Query: 191  CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             + +   Y  L+N  CR G    A  L EEM       G+V  P  +  S+II GLC+  
Sbjct: 922  LQPNHTHYIALVNAKCRVGEIDRAFRLKEEMK----AIGIV--PAEVAESSIIRGLCRCG 975

Query: 251  G-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                  + FS M     +  +A              F  L+  LCK SK+  A  L + +
Sbjct: 976  KLEEAVIVFSSMMRSGMVPTVA-------------TFTTLMHSLCKESKIADALHLKRLM 1022

Query: 310  PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
                L  +VV+YN+LI GLC D      KH      L+  + S GL+P++ TY  L    
Sbjct: 1023 ELCRLRVDVVSYNVLITGLCKD------KHISDALDLYGEMKSKGLWPNITTYITLTGAM 1076

Query: 370  CKIGRVSSG 378
               GRV +G
Sbjct: 1077 YSTGRVQNG 1085



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 150/340 (44%), Gaps = 45/340 (13%)

Query: 89  PVTSFNILFGCL--AKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSHGF 145
           PV+   IL   +   ++KH    + LF R +L   FP    T NIL+N  C  G      
Sbjct: 191 PVSCNTILNALVEEGESKH----VWLFLRESLARKFPLGVTTCNILLNSLCTNGEFRKAE 246

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +L + ++SC   ++VT+ +++     + R   A  +   +     + DV+TYN +I+ L
Sbjct: 247 DMLQK-MKSCHISNSVTYNTILHWYVKKGRFKAALCVLEDMERDSVQADVYTYNIMIDKL 305

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMAS 263
           CR   +  A  L + M   +        PD  TY+T+I+G  +E     A ++ F+ M  
Sbjct: 306 CRIKRSTRAFLLLKRMRKDD------LTPDECTYNTLINGFFREGKINHARYV-FNHMLR 358

Query: 264 FSALNKMAFYFPLVRVQCLC----------------------LNFLCLIDGLCKISKLKI 301
            + +  +A Y  ++   C                        L +  L++G CK+S L  
Sbjct: 359 QNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSALLNGYCKVSMLGP 418

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  L + L   G+  N     ILI G C  G++ + K       + K +   G+ PD+ T
Sbjct: 419 AIYLMEDLKSRGITINKTMRTILIDGFCQVGEISKAKQ------ILKSMFEDGIDPDVIT 472

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           Y+ LIN  C++ ++     I  R+  S   P+ V +T+LI
Sbjct: 473 YSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLI 512



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 135/313 (43%), Gaps = 24/313 (7%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P   S+NIL     K   +   L L+K +   G+ PD  TY +LI    + G +      
Sbjct: 784  PNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKF 843

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            L +++     PD + F  LI     +S++  A  +F  ++         T++ +INGL R
Sbjct: 844  LEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIR 903

Query: 208  TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
             G+   +  +  EM        V  +P+   Y  +++  C+  G  +   F       A+
Sbjct: 904  KGYLDHSHKVLHEM------LQVGLQPNHTHYIALVNAKCR-VGEID-RAFRLKEEMKAI 955

Query: 268  NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                   P    +        +I GLC+  KL+ A  +F S+ R+G++P V T+  L+  
Sbjct: 956  G----IVPAEVAES------SIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLMHS 1005

Query: 328  LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            LC + ++ +  H + +  L +      L  D+ +YN+LI   CK   +S    ++G +  
Sbjct: 1006 LCKESKIADALHLKRLMELCR------LRVDVVSYNVLITGLCKDKHISDALDLYGEMKS 1059

Query: 388  SCFTPDAVTFTSL 400
                P+  T+ +L
Sbjct: 1060 KGLWPNITTYITL 1072



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 144/305 (47%), Gaps = 31/305 (10%)

Query: 98  GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 157
           G + + +H+   +S   R+N++    D  ++N +I+ +C  G +   F V   ++R  ++
Sbjct: 554 GMITEAEHFRQYMS---RMNISF---DSVSFNRIIDSYCHRGNIVGAFSVYDDMVRYGYS 607

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P+  T+ +L++ LC    +++A    + L      +D  T+N L+ G+CR G    AL+L
Sbjct: 608 PNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYGTLDEALDL 667

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
            E+M   N      C PD  TY+ ++ G C++           + +   L  M       
Sbjct: 668 CEKMIKNN------CLPDIHTYTILLSGFCRKG--------KILPALVILQMMLEK---- 709

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLP-RAGLMPNVVTYNILIRGLCNDGQMDE 336
            V    + + CL++GL    ++K A  +F  +  + GL  + + YN L+ G        +
Sbjct: 710 GVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYL------K 763

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
           +++  T+  +   +    ++P+  +YNIL++ + K G+ S    ++  ++     PD VT
Sbjct: 764 SRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVT 823

Query: 397 FTSLI 401
           +  LI
Sbjct: 824 YRLLI 828



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 147/368 (39%), Gaps = 63/368 (17%)

Query: 92   SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
            +FN L   + +    D  L L +++      PD +TY IL++ FC+ G++    V+L  +
Sbjct: 647  TFNALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMM 706

Query: 152  LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV-FGCELDVFTYNTLINGLCRTGH 210
            L     PD V +T L+  L  E ++  A+ +F ++    G   D   YN+L+NG  ++ +
Sbjct: 707  LEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRN 766

Query: 211  TIVALNLFEEMANGN------------------GEFGVV-----------CEPDAITYST 241
                  +  +M                      G+F                PD +TY  
Sbjct: 767  VNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRL 826

Query: 242  IIDGLCK----------------EAGSANFLGFSCM-ASFSALNKMAFYFPLVRVQCLCL 284
            +I GL +                E    + L F  +  +FS  +KM  +  L    C+  
Sbjct: 827  LILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKM--HNALQVFNCMKW 884

Query: 285  --------NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
                     F  +I+GL +   L  + ++   + + GL PN   Y  L+   C  G++D 
Sbjct: 885  LHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDR 944

Query: 337  TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                   F L + + + G+ P     + +I   C+ G++    ++F  ++ S   P   T
Sbjct: 945  A------FRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVAT 998

Query: 397  FTSLIKIL 404
            FT+L+  L
Sbjct: 999  FTTLMHSL 1006



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 155/365 (42%), Gaps = 44/365 (12%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EG IT     EA     YM  M  S   V SFN +        +     S++  +   G 
Sbjct: 553 EGMIT-----EAEHFRQYMSRMNISFDSV-SFNRIIDSYCHRGNIVGAFSVYDDMVRYGY 606

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+  TY  L+   C+ G +      +  +L   F  D  TF +L+  +C    + EA  
Sbjct: 607 SPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYGTLDEALD 666

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L  K+    C  D+ TY  L++G CR G  + AL + + M     E GVV  PD + Y+ 
Sbjct: 667 LCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMML----EKGVV--PDTVAYTC 720

Query: 242 IIDGL-----------------CKEAGSANFLGFSCMA-------SFSALNKMAFYFPLV 277
           +++GL                 CKE   A+ + ++ +        + + + +M       
Sbjct: 721 LLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRNVNTIKRMMSDMYQN 780

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD-E 336
            V     ++  L+ G  K  +   +  L++ + R G+ P+ VTY +LI GL   G +D  
Sbjct: 781 EVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIA 840

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
            K  E + L        G+FPD   ++ILI  F +  ++ +   +F  +     +P + T
Sbjct: 841 VKFLEKMVL-------EGIFPDRLVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKT 893

Query: 397 FTSLI 401
           F+++I
Sbjct: 894 FSAMI 898



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 101/252 (40%), Gaps = 32/252 (12%)

Query: 154 SCFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           S F P + V F  L+K    E ++++AA     +   G +    + NT++N L   G + 
Sbjct: 149 SRFDPTNHVVFELLVKAYVKERKVLDAAVAVLFMDDCGFKASPVSCNTILNALVEEGESK 208

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
                  E        GV       T + +++ LC    +  F     M     L KM  
Sbjct: 209 HVWLFLRESLARKFPLGVT------TCNILLNSLCT---NGEFRKAEDM-----LQKMK- 253

Query: 273 YFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
                   C   N   +  ++    K  + K A  + + + R  +  +V TYNI+I  LC
Sbjct: 254 -------SCHISNSVTYNTILHWYVKKGRFKAALCVLEDMERDSVQADVYTYNIMIDKLC 306

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                   K     FLL KR+    L PD  TYN LIN F + G+++    +F  +L   
Sbjct: 307 ------RIKRSTRAFLLLKRMRKDDLTPDECTYNTLINGFFREGKINHARYVFNHMLRQN 360

Query: 390 FTPDAVTFTSLI 401
             P   T+T++I
Sbjct: 361 LVPSVATYTTMI 372



 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 2/111 (1%)

Query: 112  LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC-FTPDAVTFTSLIKDL 170
            +F  +  +G+ P   T+  L++  CK  +++   + L R++  C    D V++  LI  L
Sbjct: 983  VFSSMMRSGMVPTVATFTTLMHSLCKESKIADA-LHLKRLMELCRLRVDVVSYNVLITGL 1041

Query: 171  CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            C +  I +A  L+ +++  G   ++ TY TL   +  TG       L E++
Sbjct: 1042 CKDKHISDALDLYGEMKSKGLWPNITTYITLTGAMYSTGRVQNGEELLEDI 1092



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 71   NEALCVFDYMLNMRPSR-PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
             EA+ VF  M  MR    P V +F  L   L K       L L + + L  L  D  +YN
Sbjct: 978  EEAVIVFSSM--MRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLRVDVVSYN 1035

Query: 130  ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +LI   CK   +S    + G +      P+  T+ +L   + +  R+     L   +   
Sbjct: 1036 VLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTGAMYSTGRVQNGEELLEDIEER 1095

Query: 190  GCELDVFTYNTLINGLCRTGHTIVALNLF 218
            G    +  Y    N   R    I+ LN+ 
Sbjct: 1096 GL---IPAYKQPENLERRMEDAIIRLNMI 1121


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 163/365 (44%), Gaps = 41/365 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL VF+ M   + + P ++++NIL   L +    DT   L   +   GLFP+  T NI
Sbjct: 360 DEALKVFEEM--KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNI 417

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++  CK  ++     +   +     TPD +TF SLI  L    R+ +A  ++ K+    
Sbjct: 418 MVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSD 477

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
           C  +   Y +LI      G       ++++M N N      C PD    +T +D + K  
Sbjct: 478 CRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQN------CSPDLQLLNTYMDCMFKAG 531

Query: 249 --EAGSANFLGFSC------MASFSAL----------NKMAFYFPLVRVQCLCLN---FL 287
             E G A F             S+S L          N+    F  ++ Q   L+   + 
Sbjct: 532 EPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYN 591

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            +IDG CK  K+  A +L + +   G  P VVTY  +I GL    ++DE       ++LF
Sbjct: 592 IVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDE------AYMLF 645

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS----LIKI 403
           +   S  +  ++  Y+ LI+ F K+GR+   ++I   ++    TP+  T+ S    L+K 
Sbjct: 646 EEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKA 705

Query: 404 LEINS 408
            EIN 
Sbjct: 706 EEINE 710



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 124/285 (43%), Gaps = 30/285 (10%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD    N  ++C  K G    G  +   I    F PDA +++ LI  L       E   L
Sbjct: 515 PDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYEL 574

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F  ++  GC LD   YN +I+G C+ G    A  L EEM           EP  +TY ++
Sbjct: 575 FYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKG------FEPTVVTYGSV 628

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKL 299
           IDGL K                  L++    F   + + + LN   +  LIDG  K+ ++
Sbjct: 629 IDGLAK---------------IDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRI 673

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A  + + L + GL PN+ T+N L+  L    +++E        + F+ +      P+ 
Sbjct: 674 DEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINE------ALVCFQSMKELKCTPNQ 727

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            TY ILIN  CK+ + +  FV +  +      P  +++T++I  L
Sbjct: 728 VTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 140/318 (44%), Gaps = 25/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP  +++  L G  +   H D +L+LF+++   G  P  + +  LI  F K GRV     
Sbjct: 165 RPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALS 224

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +  S    D V +   I       ++  A   F ++   G + D  TY ++I  LC
Sbjct: 225 LLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLC 284

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      A+ +FE +            P    Y+T+I G     GSA    F    S   
Sbjct: 285 KANRLDEAVEMFEHLEKNRR------VPCTYAYNTMIMGY----GSAG--KFDEAYSLLE 332

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +     P V      + + C++  L K+ K+  A ++F+ + +    PN+ TYNILI 
Sbjct: 333 RQRAKGSIPSV------IAYNCILTCLRKMGKVDEALKVFEEMKKDA-APNLSTYNILID 385

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC  G++D      T F L   +   GLFP++ T NI+++  CK  ++     +F  + 
Sbjct: 386 MLCRAGKLD------TAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMD 439

Query: 387 PSCFTPDAVTFTSLIKIL 404
               TPD +TF SLI  L
Sbjct: 440 YKVCTPDEITFCSLIDGL 457



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 140/346 (40%), Gaps = 27/346 (7%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P +   +F+  +  R   P   S++IL   L K    +    LF  +   G   D   YN
Sbjct: 533 PEKGRAMFEE-IKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYN 591

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           I+I+ FCK G+V+  + +L  +    F P  VT+ S+I  L    R+ EA  LF + +  
Sbjct: 592 IVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 651

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK- 248
             EL+V  Y++LI+G  + G    A  + EE+            P+  T+++++D L K 
Sbjct: 652 RIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG------LTPNLYTWNSLLDALVKA 705

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           E  +   + F  M           Y               LI+GLCK+ K   A   +Q 
Sbjct: 706 EEINEALVCFQSMKELKCTPNQVTYG-------------ILINGLCKVRKFNKAFVFWQE 752

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           + + G+ P+ ++Y  +I GL   G + E         LF R  + G  PD   YN +I  
Sbjct: 753 MQKQGMKPSTISYTTMISGLAKAGNIAEAG------ALFDRFKANGGVPDSACYNAMIEG 806

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414
                R    F +F             T   L+  L  N    Q A
Sbjct: 807 LSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAA 852


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 142/347 (40%), Gaps = 49/347 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+N +    +K    D+   +F R+   G  PD  TYNI+I   C  G++   F V
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +L+    P  +T+T LI+    E RI EA  LF +L   G   D++TYN +I G+C+
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICK 248

Query: 208 TGHTIVALNLFEEMANGNGEFGVV-----------------------------CEPDAIT 238
            G    AL+    ++       VV                             CEP+ +T
Sbjct: 249 EGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVT 308

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF-YFPLVRVQCLCLNFLCLIDGLCKIS 297
           +S +I   C+E      +    +     L   ++ Y P             LI   CK  
Sbjct: 309 HSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDP-------------LISAFCKEG 355

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           +L +A E  + +   G +P++V YN ++  LC  G  D          +F++L+  G  P
Sbjct: 356 RLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCAD------LALDVFEKLDEVGCPP 409

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +  YN + +     G       +   ++     PD +T+ SLI  L
Sbjct: 410 TVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCL 456



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 164/361 (45%), Gaps = 32/361 (8%)

Query: 49  LEQFLKERCKSSG-------EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA 101
           +++ LK+ CK S        E  I     NEAL +FD +++ R  RP + ++N +   + 
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVS-RGLRPDLYTYNAIIRGIC 247

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K    D  L   + L+  G  PD  +YNIL+  F    R   G  ++  ++ S   P+ V
Sbjct: 248 KEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVV 307

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           T + LI   C E R+ EA  +   ++  G   D ++Y+ LI+  C+ G   +A+   E+M
Sbjct: 308 THSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKM 367

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
            +        C PD + Y+TI+  LCK  G A+      +  F  L+++    P VR   
Sbjct: 368 VSDG------CLPDIVNYNTILATLCK-FGCADL----ALDVFEKLDEVGCP-PTVRA-- 413

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
               +  +   L        A E+   + R G+ P+ +TYN LI  LC DG +DE     
Sbjct: 414 ----YNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEA---- 465

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               L   + +T   P + ++NI++   CK  RV  G  +   ++     P+  ++  LI
Sbjct: 466 --IGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLI 523

Query: 402 K 402
           +
Sbjct: 524 E 524



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 134/322 (41%), Gaps = 51/322 (15%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           L+ R   P V S+NIL         ++    L K + L+G  P+  T++ILI+ FC+ GR
Sbjct: 262 LSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGR 321

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V     VL  +     TPD+ ++  LI   C E R+  A     K+   GC  D+  YNT
Sbjct: 322 VREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNT 381

Query: 201 LINGLCRTGHTIVALNLFEEM----------------------ANGNGEFGVVCE----- 233
           ++  LC+ G   +AL++FE++                       N      ++ E     
Sbjct: 382 ILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKG 441

Query: 234 --PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
             PD ITY+++I  LC++      +G   +    A           R Q   ++F  ++ 
Sbjct: 442 IDPDEITYNSLISCLCRDGLVDEAIGL--LVDMEA----------TRFQPTVISFNIVLL 489

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF---- 347
           G+CK  ++    EL  ++   G +PN  +Y +LI G+   G   E               
Sbjct: 490 GMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAMELANSLYRLGVIS 549

Query: 348 ----KRLNSTGLFPDLYTYNIL 365
               KRLN T  FP L  Y  L
Sbjct: 550 GDSSKRLNKT--FPMLDVYKGL 569



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 119/273 (43%), Gaps = 29/273 (10%)

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+N  C+ G+ +     L  ++   F PD V  T LIK       + +A  +   L  +G
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + DV++YN +I+G  +      A  +F+ M +          PD +TY+ +I  LC   
Sbjct: 128 -DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRG------FSPDVVTYNIMIGSLCSRG 180

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQS 308
                L F  M              L++  C    + +  LI+      ++  A ELF  
Sbjct: 181 KLE--LAFEVMDE------------LLKDGCKPSVITYTILIEATILEGRINEALELFDE 226

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   GL P++ TYN +IRG+C +G  D    +       + L++ G  PD+ +YNIL+  
Sbjct: 227 LVSRGLRPDLYTYNAIIRGICKEGMEDRALDF------VRHLSARGCNPDVVSYNILLRS 280

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           F    R   G  +   ++ S   P+ VT + LI
Sbjct: 281 FLNKSRWEDGERLMKDMVLSGCEPNVVTHSILI 313



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 127/314 (40%), Gaps = 48/314 (15%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  PD      LI  F     +     V+  IL +   PD  ++ ++I      ++I  A
Sbjct: 92  GFKPDVVLCTKLIKGFFNSRNLKKAMRVM-EILETYGDPDVYSYNAMISGFSKANQIDSA 150

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC------- 232
             +F ++R  G   DV TYN +I  LC  G   +A  + +E+     +  V+        
Sbjct: 151 NQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEA 210

Query: 233 ----------------------EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
                                  PD  TY+ II G+CKE      L F    S    N  
Sbjct: 211 TILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCN-- 268

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
               P V      +++  L+      S+ +    L + +  +G  PNVVT++ILI   C 
Sbjct: 269 ----PDV------VSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCR 318

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
           +G++ E  +      + + +   GL PD Y+Y+ LI+ FCK GR+        +++    
Sbjct: 319 EGRVREAVN------VLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGC 372

Query: 391 TPDAVTFTSLIKIL 404
            PD V + +++  L
Sbjct: 373 LPDIVNYNTILATL 386


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 145/328 (44%), Gaps = 26/328 (7%)

Query: 75  CVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           C+ + M+      P   ++N L   L+K  H D  L+  K     G   D+  Y+ +++ 
Sbjct: 357 CLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHS 416

Query: 135 FCKMGRVSHG-FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
           FC+ GR+     +V+    RSC  PD VT+T+++   C   RI EA  +  ++   GC+ 
Sbjct: 417 FCQKGRMDEAKSLVIDMYSRSC-NPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKP 475

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           +  +Y  L+NGLC +G ++ A     EM N + E      P+AITY  ++ G  +E    
Sbjct: 476 NTVSYTALLNGLCHSGKSLEA----REMINVSEEHWWT--PNAITYGVVMHGFRREGK-- 527

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
             L  +C  +   + K  F  P        +    LI  LC+  K+  A++  +     G
Sbjct: 528 --LSEACDLTREMVEKGFFPTP--------VEINLLIQSLCQNQKVVEAKKYLEECLNKG 577

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
              NVV +  +I G C  G M      E    + + +  +   PD  TY  L +   K G
Sbjct: 578 CAINVVNFTTVIHGFCQIGDM------EAALSVLEDMYLSNKHPDAVTYTALFDALGKKG 631

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           R+     +  ++L     P  VTF S+I
Sbjct: 632 RLDEAAELIVKMLSKGLDPTPVTFRSVI 659



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 149/324 (45%), Gaps = 28/324 (8%)

Query: 85  PSR---PPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGR 140
           PS+   P   S+  + G L K K  + V  L +++   + L PD+ TYN LI+   K G 
Sbjct: 328 PSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGH 387

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                  L       F  D V +++++   C + R+ EA +L   +    C  DV TY  
Sbjct: 388 ADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTA 447

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           +++G CR G    A  + ++M      +   C+P+ ++Y+ +++GLC    S   L    
Sbjct: 448 IVDGFCRLGRIDEAKKMLQQM------YKHGCKPNTVSYTALLNGLCHSGKS---LEARE 498

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
           M + S  +   ++ P        + +  ++ G  +  KL  A +L + +   G  P  V 
Sbjct: 499 MINVSEEH---WWTPNA------ITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVE 549

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
            N+LI+ LC + ++ E K Y     L + LN  G   ++  +  +I+ FC+IG + +   
Sbjct: 550 INLLIQSLCQNQKVVEAKKY-----LEECLNK-GCAINVVNFTTVIHGFCQIGDMEAALS 603

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           +   +  S   PDAVT+T+L   L
Sbjct: 604 VLEDMYLSNKHPDAVTYTALFDAL 627



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 141/320 (44%), Gaps = 27/320 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P ++  N     L K    +  L   +R+ +TG+ PD  TYN LI  +C + R+     
Sbjct: 263 EPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALE 322

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL--DVFTYNTLING 204
           ++  +      PD V++ +++  LC E +I +   L  K+ V    L  D  TYNTLI+ 
Sbjct: 323 LIAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKM-VQDSNLIPDQVTYNTLIHM 381

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           L + GH   AL   +E A   G F +    D + YS I+   C++               
Sbjct: 382 LSKHGHADDALAFLKE-AEDKG-FHI----DKVGYSAIVHSFCQKGRMDEAKSLVIDMYS 435

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            + N      P V      + +  ++DG C++ ++  A+++ Q + + G  PN V+Y  L
Sbjct: 436 RSCN------PDV------VTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTAL 483

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + GLC+ G+  E +    V             P+  TY ++++ F + G++S    +   
Sbjct: 484 LNGLCHSGKSLEAREMINVS------EEHWWTPNAITYGVVMHGFRREGKLSEACDLTRE 537

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           ++   F P  V    LI+ L
Sbjct: 538 MVEKGFFPTPVEINLLIQSL 557



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 134/320 (41%), Gaps = 24/320 (7%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
             R S  P+  + +L   L+KTK       + + +   G+      +  ++  + + G++
Sbjct: 189 QWRYSHHPLVYYTLL-DVLSKTKLCQGARRVLRLMTRRGIELSPEAFGCVMVSYSRAGKL 247

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
            +   VL  + ++   P+     + I  L    ++ +A     +++V G + D+ TYN+L
Sbjct: 248 RNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSL 307

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCM 261
           I G C       AL L   + +        C PD ++Y T++  LCKE          C+
Sbjct: 308 IKGYCDLNRIEDALELIAGLPSKG------CPPDKVSYYTVMGFLCKE---KKIEQVKCL 358

Query: 262 ASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
                + KM     L+  Q   + +  LI  L K      A    +     G   + V Y
Sbjct: 359 -----MEKMVQDSNLIPDQ---VTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGY 410

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           + ++   C  G+MDE K       L   + S    PD+ TY  +++ FC++GR+     +
Sbjct: 411 SAIVHSFCQKGRMDEAKS------LVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKM 464

Query: 382 FGRILPSCFTPDAVTFTSLI 401
             ++      P+ V++T+L+
Sbjct: 465 LQQMYKHGCKPNTVSYTALL 484



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 24/213 (11%)

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
            +  +I+ FC++G +     VL  +  S   PDAVT+T+L   L  + R+ EAA L  K+
Sbjct: 584 NFTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKM 643

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G +    T+ ++I+  C+ G     LNL + M        V  +P    Y+ +I+ L
Sbjct: 644 LSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLLDRM--------VKRKPFRTIYNHVIEKL 695

Query: 247 CK--EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           C       A  L    + + S L+            C  L   CL  G+  +S  K+A +
Sbjct: 696 CDFGNLEEAEKLLGKVLRTASKLDANT---------CHVLMESCLKKGVA-LSAYKVACQ 745

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           +F    R  L P++     + + L  DG + E 
Sbjct: 746 MF----RRNLTPDLKLCEKVTKKLVLDGNLVEA 774



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 6/179 (3%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL V + M  +    P   ++  LF  L K    D    L  ++   GL P   T+  +I
Sbjct: 601 ALSVLEDMY-LSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVI 659

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + +C+ GRV     +L R+++    P    +  +I+ LC    + EA  L  K+     +
Sbjct: 660 HRYCQWGRVDDMLNLLDRMVKR--KPFRTIYNHVIEKLCDFGNLEEAEKLLGKVLRTASK 717

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV-VCEPDAITYSTIIDGLCKEA 250
           LD  T + L+    + G  + A  +  +M   N    + +CE   +T   ++DG   EA
Sbjct: 718 LDANTCHVLMESCLKKGVALSAYKVACQMFRRNLTPDLKLCE--KVTKKLVLDGNLVEA 774



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +F  +     +    +  LS+ + + L+   PD  TY  L +   K GR+     ++ 
Sbjct: 582 VVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIV 641

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF--TYNTLINGLCR 207
           ++L     P  VTF S+I   C   R+ +   L  ++     +   F   YN +I  LC 
Sbjct: 642 KMLSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLLDRM----VKRKPFRTIYNHVIEKLCD 697

Query: 208 TGHTIVALNLF 218
            G+   A  L 
Sbjct: 698 FGNLEEAEKLL 708


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 145/351 (41%), Gaps = 49/351 (13%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           +  +P V ++N +     K    D    +  R+   G  PD  TYNILI  FC  GR+  
Sbjct: 140 KHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDL 199

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              V+ ++L+    P  +T+T LI+    +  I EA  L  ++   G   D +TYN ++N
Sbjct: 200 ALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVN 259

Query: 204 GLCRTGHTIVALNLFEEMA--------------------NGNGEFGVV---------CEP 234
           G+C+ G    A      ++                     G  E+G           CEP
Sbjct: 260 GMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEP 319

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF-YFPLVRVQCLCLNFLCLIDGL 293
           + ITYST+I  LC++           +    AL    + Y P             LI  L
Sbjct: 320 NPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDP-------------LISAL 366

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           C+  K+ +A E    +   G +P++++YN ++  LC +G  DE  +      +F++L   
Sbjct: 367 CREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALN------IFEKLGEV 420

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G  P+  +YN L       G       +   +L +   PD +T+ SLI  L
Sbjct: 421 GCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCL 471



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 137/318 (43%), Gaps = 29/318 (9%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL V D +L     +P V ++ IL          D  + L   +   GL PDRYTYN+++
Sbjct: 200 ALRVMDQLLK-DNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVV 258

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK G +   F  L RI ++       T+  L++DL  E +      L + + V GCE
Sbjct: 259 NGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCE 318

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            +  TY+TLI  LCR G    A N+ + M            PD  +Y  +I  LC+E   
Sbjct: 319 PNPITYSTLITALCRDGKIDEAKNVLKVMKEK------ALAPDGYSYDPLISALCREGKV 372

Query: 253 ANFLGFSCMASFSALNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              + F        L+ M    + P +      L++  ++  LCK      A  +F+ L 
Sbjct: 373 DLAIEF--------LDDMISGGHLPDI------LSYNSILASLCKNGNADEALNIFEKLG 418

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  PN  +YN L   L + G  D+ +    +  +     S G+ PD  TYN LI+C C
Sbjct: 419 EVGCPPNAGSYNTLFGALWSSG--DKIRALGMILEML----SNGIDPDEITYNSLISCLC 472

Query: 371 KIGRVSSGFVIFGRILPS 388
           + G V     +   +  S
Sbjct: 473 RDGLVDQAIELLVDMFES 490



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 161/362 (44%), Gaps = 33/362 (9%)

Query: 49  LEQFLKERCKSSG-------EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA 101
           ++Q LK+ CK +        E  IT    +EA+ + D ML+ R  RP   ++N++   + 
Sbjct: 204 MDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLS-RGLRPDRYTYNVVVNGMC 262

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K    D       R++  G      TYNIL+      G+  +G  ++  +L     P+ +
Sbjct: 263 KEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPI 322

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           T+++LI  LC + +I EA  +   ++      D ++Y+ LI+ LCR G   +A+   ++M
Sbjct: 323 TYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDM 382

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQ 280
            +G G       PD ++Y++I+  LCK   +   L  F  +           Y  L    
Sbjct: 383 ISG-GHL-----PDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTL---- 432

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
                F  L     KI  L +  E+  +    G+ P+ +TYN LI  LC DG +D     
Sbjct: 433 -----FGALWSSGDKIRALGMILEMLSN----GIDPDEITYNSLISCLCRDGLVD----- 478

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           + + LL     S    P + +YN ++   CK+ R+     +   ++     P+  T+T L
Sbjct: 479 QAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLL 538

Query: 401 IK 402
           I+
Sbjct: 539 IQ 540



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 132/339 (38%), Gaps = 62/339 (18%)

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K+  YD  L   + +   G  PD      LI  F  M ++     V+  IL     PD  
Sbjct: 89  KSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVM-EILEKHGKPDVF 147

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            + ++I   C   R+  A+ +  +++  G E DV TYN LI   C  G   +AL + +++
Sbjct: 148 AYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQL 207

Query: 222 ANGNGEFGVVC-----------------------------EPDAITYSTIIDGLCKEAGS 252
              N +  V+                               PD  TY+ +++G+CKE   
Sbjct: 208 LKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGML 267

Query: 253 ANFLGF-------SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
                F        C+A  S  N                    L+  L    K +   +L
Sbjct: 268 DRAFEFLSRISKNGCVAGVSTYN-------------------ILLRDLLNEGKWEYGEKL 308

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
              +   G  PN +TY+ LI  LC DG++DE K+      + K +    L PD Y+Y+ L
Sbjct: 309 MSDMLVKGCEPNPITYSTLITALCRDGKIDEAKN------VLKVMKEKALAPDGYSYDPL 362

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           I+  C+ G+V         ++     PD +++ S++  L
Sbjct: 363 ISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASL 401



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 19/243 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   +++ L   L +    D   ++ K +    L PD Y+Y+ LI+  C+ G+V     
Sbjct: 318 EPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIE 377

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L  ++     PD +++ S++  LC      EA  +F KL   GC  +  +YNTL   L 
Sbjct: 378 FLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALW 437

Query: 207 RTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
            +G  I AL +  EM +NG        +PD ITY+++I  LC++                
Sbjct: 438 SSGDKIRALGMILEMLSNG-------IDPDEITYNSLISCLCRDG-----------LVDQ 479

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           A+  +   F   + Q   +++  ++ GLCK+ ++  A E+  ++   G +PN  TY +LI
Sbjct: 480 AIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLI 539

Query: 326 RGL 328
           +G+
Sbjct: 540 QGI 542



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 4/155 (2%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +F+  L      P   S+N LFG L  +      L +   +   G+ PD  TYN 
Sbjct: 408 DEALNIFE-KLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNS 466

Query: 131 LINCFCKMGRVSHGFVVLGRILRS--CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           LI+C C+ G V     +L  +  S  C  P  +++ +++  LC   RI++A  +   +  
Sbjct: 467 LISCLCRDGLVDQAIELLVDMFESEKC-QPTVISYNTVLLGLCKVQRIIDAIEVLAAMVN 525

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
            GC  +  TY  LI G+   G    A+ L   + N
Sbjct: 526 EGCLPNETTYTLLIQGIGFAGWRYDAMELANLLVN 560


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 160/333 (48%), Gaps = 25/333 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVT-SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +EAL +   M     + PP   S+N++   L ++      L +F  +   G+ P++ TYN
Sbjct: 175 DEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYN 234

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +I+   K G +  GF +  ++L+    P+ VT+  L+  LC   R+ E  AL  ++  +
Sbjct: 235 TMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSY 294

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
               D FTY+ L +GL RTG +   L+LF E      + GV+    A T S +++GLCK+
Sbjct: 295 SMLPDGFTYSILFDGLTRTGDSRTMLSLFGESL----KKGVII--GAYTCSILLNGLCKD 348

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                      +A    + +M  +  LV    +   +  LI+G C++  L+ A  +F+ +
Sbjct: 349 GK---------VAKAEQVLEMLVHTGLVPTTAI---YNTLINGYCQVRDLQGAFSIFEQM 396

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
               + P+ +TYN LI GLC    + E +       L   +  +G+ P + T+N LI+ +
Sbjct: 397 KSRHIRPDHITYNALINGLCKMEMITEAED------LVMEMEKSGVDPSVETFNTLIDAY 450

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            + G++   F +   +       + ++F S++K
Sbjct: 451 GRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVK 483



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 152/345 (44%), Gaps = 37/345 (10%)

Query: 82  NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           ++R   P ++S N+L   L     +  V + F  L   G  PD + +N  +      G +
Sbjct: 115 SVRSPLPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDL 174

Query: 142 SHGFVVLGRILRS--CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
                +L R+ RS     PDA ++  +I  L    +  +A  +F ++   G   +  TYN
Sbjct: 175 DEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYN 234

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----------- 248
           T+I+G  + G       L ++M   +G      +P+ +TY+ ++ GLC+           
Sbjct: 235 TMIDGHVKGGDLEAGFRLRDQMLQ-DGR-----KPNVVTYNVLLSGLCRAGRMDETRALM 288

Query: 249 -EAGSANFL--GFSCMASFSALNK-------MAFYFPLVRVQCLCLNFLC--LIDGLCKI 296
            E  S + L  GF+    F  L +       ++ +   ++   +   + C  L++GLCK 
Sbjct: 289 DEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKD 348

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            K+  A ++ + L   GL+P    YN LI G C      + +  +  F +F+++ S  + 
Sbjct: 349 GKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYC------QVRDLQGAFSIFEQMKSRHIR 402

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           PD  TYN LIN  CK+  ++    +   +  S   P   TF +LI
Sbjct: 403 PDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLI 447



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 140/311 (45%), Gaps = 26/311 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P    +N L     + +      S+F+++    + PD  TYN LIN  CKM  ++    +
Sbjct: 368 PTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDL 427

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  + +S   P   TF +LI       ++ +   + + ++  G + +V ++ +++   C+
Sbjct: 428 VMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCK 487

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN-FLGFSCMASFSA 266
            G    A+ + ++M + +    VV  P+A  Y++IID   +  G+   FL    M S S 
Sbjct: 488 NGKIPEAVAILDDMIHKD----VV--PNAQVYNSIIDAYIESGGTEQAFLLVEKMKS-SG 540

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           ++   F + L            L+ GLCK S++  A EL  +L   GL P+VV+YN +I 
Sbjct: 541 VSASIFTYNL------------LLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIIS 588

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             CN G  D          L + ++   + P L TY+ L++     GRV     ++  ++
Sbjct: 589 ACCNKGDTDR------ALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMV 642

Query: 387 PSCFTPDAVTF 397
                P +  +
Sbjct: 643 HKNVEPSSSIY 653



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 142/345 (41%), Gaps = 45/345 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++ILF  L +T    T+LSLF      G+    YT +IL+N  CK G+V+    V
Sbjct: 298 PDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQV 357

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++ +   P    + +LI   C    +  A ++F +++      D  TYN LINGLC+
Sbjct: 358 LEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCK 417

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A +L  EM           +P   T++T+ID      G A  L   C    S +
Sbjct: 418 MEMITEAEDLVMEMEKSG------VDPSVETFNTLIDAY----GRAGQL-EKCFTVLSDM 466

Query: 268 NKMAFYFPLVR----VQCLCLN------------------------FLCLIDGLCKISKL 299
                   ++     V+  C N                        +  +ID   +    
Sbjct: 467 QDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGT 526

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
           + A  L + +  +G+  ++ TYN+L++GLC + Q+DE +       L   L + GL PD+
Sbjct: 527 EQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEE------LIYNLTNQGLRPDV 580

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            +YN +I+  C  G       +   +      P   T+  L+  L
Sbjct: 581 VSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSAL 625



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 9/203 (4%)

Query: 78  DYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           D ++ M  S   P V +FN L     +    +   ++   +   G+  +  ++  ++  F
Sbjct: 426 DLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAF 485

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK G++     +L  ++     P+A  + S+I          +A  L  K++  G    +
Sbjct: 486 CKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASI 545

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           FTYN L+ GLC+      A  L   + N          PD ++Y+TII   C +  +   
Sbjct: 546 FTYNLLLKGLCKNSQIDEAEELIYNLTNQG------LRPDVVSYNTIISACCNKGDTDRA 599

Query: 256 LG-FSCMASFSALNKMAFYFPLV 277
           L     M  +     +  Y PL+
Sbjct: 600 LELLQEMHKYDIRPTLRTYHPLL 622



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/174 (19%), Positives = 75/174 (43%), Gaps = 6/174 (3%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ + D M++ +   P    +N +     ++   +    L +++  +G+    +TYN+L
Sbjct: 493 EAVAILDDMIH-KDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLL 551

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   CK  ++     ++  +      PD V++ ++I   C +     A  L  ++  +  
Sbjct: 552 LKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDI 611

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE-----FGVVCEPDAITYS 240
              + TY+ L++ L   G       L++ M + N E     +G  CE ++   S
Sbjct: 612 RPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGTRCENESKVAS 665


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 148/317 (46%), Gaps = 21/317 (6%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V  ++ L   L + K Y+ V  L++++    + PD Y Y I++    + G+V     +L 
Sbjct: 301 VRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLN 360

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +  S   PD V +  LIK  C    + EA +L  ++    C  +V TY+ LI+G+CR G
Sbjct: 361 EMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNG 420

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFSAL 267
            T  A  +F EM        + C P A+T++++IDGLCK  +   A+ L +      +  
Sbjct: 421 LTRDAQEIFNEMEK------LGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNP- 473

Query: 268 NKMAFYFPLVRVQCLCLNFLCL---IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
              + +  L +     L+   L   ++ LC    +  A  +   L  +G  P + TYNIL
Sbjct: 474 ---SLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNIL 530

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           + G C  G      ++   + LF+ +   GL PD  TY  LIN   +  R    + +F +
Sbjct: 531 VNGFCKLG------NFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQ 584

Query: 385 ILPSCFTPDAVTFTSLI 401
           +  +  TPDA  + +++
Sbjct: 585 MEKNGCTPDAAVYRTMM 601



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 164/397 (41%), Gaps = 78/397 (19%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL V+  M+ +    P V +F+IL   L K+ +    L LF  +   G+ PD +TY ++I
Sbjct: 180 ALTVYTRMMKLN-CLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVI 238

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  C+  RV   + +  ++  S   PD VT  +L+   C   R+ EA +L       G  
Sbjct: 239 SGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYV 298

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           LDV  Y+ LI GL R         L+ +M   N       +PD   Y+ ++ GL  EAG 
Sbjct: 299 LDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDN------VKPDVYLYTIMMKGLA-EAGK 351

Query: 253 A----------------------NFL--GFSCMASFSALNKMAFYFPLVRVQCL--CLNF 286
                                  N L  GF  M   S    +     + R  C      +
Sbjct: 352 VRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQ--LEISRHDCFPNVKTY 409

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD---------ET 337
             LI G+C+    + A+E+F  + + G  P+ VT+N LI GLC  GQ++         E 
Sbjct: 410 SILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEI 469

Query: 338 KHYETVFL---------------------------------LFKRLNSTGLFPDLYTYNI 364
               ++FL                                 +  +L  +G  P +YTYNI
Sbjct: 470 GRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNI 529

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L+N FCK+G  +  + +F  +     +PD VT+ +LI
Sbjct: 530 LVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLI 566



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 151/333 (45%), Gaps = 35/333 (10%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +F +L     K    D  +  F  +      PD YTYN++++   +   +     V  R+
Sbjct: 128 AFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRM 187

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           ++    P+  TF+ LI  LC    + +A  LF ++   G   D FTY  +I+GLCR+   
Sbjct: 188 MKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRV 247

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----------------KEAGSANF 255
             A  LF++M +     GV   PD +T + +++G C                K+    + 
Sbjct: 248 DDAYRLFDKMKDS----GV--GPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDV 301

Query: 256 LGFSCMAS--FSAL---NKMAFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQS 308
            G+SC+    F A    +    Y  ++   V+     +  ++ GL +  K++ A EL   
Sbjct: 302 RGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNE 361

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +  +G++P+ V YN+LI+G C+ G + E +  +        ++    FP++ TY+ILI+ 
Sbjct: 362 MTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQL------EISRHDCFPNVKTYSILISG 415

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            C+ G       IF  +      P AVTF SLI
Sbjct: 416 MCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLI 448



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 133/276 (48%), Gaps = 30/276 (10%)

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +LI  + KMG         G +     TPD  T+  ++  L  ++ ++ A  ++T++   
Sbjct: 131 VLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKL 190

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            C  +V T++ LI+GLC++G+   AL+LF+EM     + G++  PDA TY  +I GLC+ 
Sbjct: 191 NCLPNVATFSILIDGLCKSGNVKDALHLFDEMT----QRGIL--PDAFTYCVVISGLCRS 244

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL---CLIDGLCKISKLKIARELF 306
               +        ++   +KM       +   +  +F+    L++G C + ++  A  L 
Sbjct: 245 KRVDD--------AYRLFDKM-------KDSGVGPDFVTCNALLNGFCMLDRVDEAFSLL 289

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           +   + G + +V  Y+ LIRGL         K YE V LL++++    + PD+Y Y I++
Sbjct: 290 RLFEKDGYVLDVRGYSCLIRGLF------RAKRYEDVQLLYRKMIEDNVKPDVYLYTIMM 343

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
               + G+V     +   +  S   PD V +  LIK
Sbjct: 344 KGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIK 379



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 30/273 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  + I+   LA+       L L   +  +G+ PD   YN+LI  FC MG +S    
Sbjct: 333 KPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARS 392

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   I R    P+  T++ LI  +C      +A  +F ++   GC     T+N+LI+GLC
Sbjct: 393 LQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLC 452

Query: 207 RTGHTIVALNLFEEMANGNG-------EFGVVCEPDAITYSTIIDGLCK----------- 248
           +TG    A  LF +M  G           G     D+ +   +++ LC            
Sbjct: 453 KTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRIL 512

Query: 249 ----EAGSA------NFL--GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
               ++G A      N L  GF  + +F+   K+        +    + +  LI+GL + 
Sbjct: 513 MQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRF 572

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
            + + A ++F  + + G  P+   Y  ++  +C
Sbjct: 573 QREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMC 605



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 28/207 (13%)

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            LI    + G T  A+  F  M + +      C PD  TY+ I+D L ++    NFL   
Sbjct: 131 VLIKVYLKMGLTDKAMETFGSMRDFD------CTPDVYTYNMILDVLIQK----NFL--- 177

Query: 260 CMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
                  L  +  Y  ++++ CL     F  LIDGLCK   +K A  LF  + + G++P+
Sbjct: 178 -------LLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPD 230

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
             TY ++I GLC   ++D+       + LF ++  +G+ PD  T N L+N FC + RV  
Sbjct: 231 AFTYCVVISGLCRSKRVDDA------YRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDE 284

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKIL 404
            F +        +  D   ++ LI+ L
Sbjct: 285 AFSLLRLFEKDGYVLDVRGYSCLIRGL 311



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 53/104 (50%)

Query: 115 RLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174
           +L  +G  P  YTYNIL+N FCK+G  +  + +   +     +PD VT+ +LI  L    
Sbjct: 514 QLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQ 573

Query: 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           R  +A  +F ++   GC  D   Y T++  +CR      A +L+
Sbjct: 574 REEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLW 617



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 21/175 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP--------------DRYTYNILIN 133
           P   +FN L   L KT   +    LF ++ + G  P              D  +   ++ 
Sbjct: 439 PSAVTFNSLIDGLCKTGQLEKAHLLFYKMEI-GRNPSLFLRLSQGPSHVLDSASLQKMVE 497

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             C  G +   + +L ++  S   P   T+  L+   C       A  LF +++  G   
Sbjct: 498 QLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSP 557

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           D  TY TLINGL R      A  +F++M   NG     C PDA  Y T++  +C+
Sbjct: 558 DTVTYGTLINGLLRFQREEDAYKVFDQMEK-NG-----CTPDAAVYRTMMTWMCR 606



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 13/145 (8%)

Query: 43  VKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPS--RPPVTSFNILFGCL 100
           V D ASL++ +++ C S   G I           +  ++ +  S   P + ++NIL    
Sbjct: 486 VLDSASLQKMVEQLCDS---GLIHK--------AYRILMQLADSGDAPGIYTYNILVNGF 534

Query: 101 AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 160
            K  +++    LF+ +   GL PD  TY  LIN   +  R    + V  ++ ++  TPDA
Sbjct: 535 CKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDA 594

Query: 161 VTFTSLIKDLCAESRIMEAAALFTK 185
             + +++  +C    +  A +L+ K
Sbjct: 595 AVYRTMMTWMCRRMELPRAFSLWLK 619


>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 825

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 140/291 (48%), Gaps = 24/291 (8%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
            + +R+   G  PD  TYNI+IN  CK GR+     +L +       P+  ++T L+   
Sbjct: 331 EMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFSYTPLMHAY 390

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C +   ++A+ +  ++   G + D+ +Y   I+G+   G   VAL + E+M     E GV
Sbjct: 391 CKKGDYVKASGMLFRIAEIGEKSDLVSYGAFIHGVVVAGEIDVALMVREKMM----EKGV 446

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
              PDA  Y+ ++ GLCK+                A+  +        VQ     F  LI
Sbjct: 447 F--PDAQIYNILMSGLCKK------------GRIPAMKLLLSEMLDRNVQPDVYVFATLI 492

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           DG  +  +L  A ++F+ + R G+ P +V YN +I+G C  G+M +             +
Sbjct: 493 DGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDA------LSCLNEM 546

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           NS    PD YTY+ +I+ + K   +SS   +FG+++   F P+ +T+TSLI
Sbjct: 547 NSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLI 597



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 143/338 (42%), Gaps = 61/338 (18%)

Query: 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166
           D  L + +++   G+FPD   YNIL++  CK GR+    ++L  +L     PD   F +L
Sbjct: 432 DVALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATL 491

Query: 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           I        + EA  +F  +   G +  +  YN +I G C+ G    AL+   EM +   
Sbjct: 492 IDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNS--- 548

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
              V   PD  TYST+IDG  K+   +     S +  F  + K  F  P V      + +
Sbjct: 549 ---VHHAPDEYTYSTVIDGYVKQHDMS-----SALKMFGQMMKHKFK-PNV------ITY 593

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ------------- 333
             LI+G CK + +  A ++F  +    L+PNVVTY  L+ G    G+             
Sbjct: 594 TSLINGFCKKADMIRAEKVFSGMKSFDLVPNVVTYTTLVGGFFKAGKPERATSIFELMLM 653

Query: 334 -----MDETKHY----------ETVFLLFK--RLNSTGLFPDLYT-------------YN 363
                 D T HY            V +  K  + N   L  D +T             YN
Sbjct: 654 NGCLPNDATFHYLINGLTNTATSPVLIEEKDSKENERSLILDFFTMMLLDGWDQVIAAYN 713

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +I C CK G V +  ++  ++L   F  D+V FT+L+
Sbjct: 714 SVIVCLCKHGTVDTAQLLLTKMLTKGFLIDSVCFTALL 751



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 149/366 (40%), Gaps = 55/366 (15%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL----NLTGLFPDRY 126
           + AL +F  +  M    P   + N+L   L K+   D  L L+ ++    + TG   D Y
Sbjct: 147 DRALQLFHTVREMHNCFPTFVASNLLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNY 206

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           T +I++   C +G++  G  ++      C  P  V +  +I   C +  +  A     +L
Sbjct: 207 TTSIMVKGLCNLGKIEEGRRLIKHRWGKCCVPHVVFYNMIIDGYCKKGDLQCATRALNEL 266

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA---------------NGNGEFGVV 231
           ++ G    V TY  LING C+ G       L  EMA               +   ++G+V
Sbjct: 267 KMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEYKYGLV 326

Query: 232 --------------CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL--NKMAFYFP 275
                         C PD  TY+ +I+  CK             A    L  NK + Y P
Sbjct: 327 TEAAEMLRRMAEMGCGPDITTYNIMINFSCKGGRIEEADELLEKAKERGLLPNKFS-YTP 385

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
           L+   C   +++     L +I+++             G   ++V+Y   I G+   G++D
Sbjct: 386 LMHAYCKKGDYVKASGMLFRIAEI-------------GEKSDLVSYGAFIHGVVVAGEID 432

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
                    ++ +++   G+FPD   YNIL++  CK GR+ +  ++   +L     PD  
Sbjct: 433 ------VALMVREKMMEKGVFPDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVY 486

Query: 396 TFTSLI 401
            F +LI
Sbjct: 487 VFATLI 492



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 148/342 (43%), Gaps = 45/342 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F  ++  +   P +  +N +     K       LS    +N     PD YTY+ 
Sbjct: 502 DEAIKIFKVIIR-KGVDPGIVGYNAMIKGFCKFGKMTDALSCLNEMNSVHHAPDEYTYST 560

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+ + K   +S    + G++++  F P+ +T+TSLI   C ++ ++ A  +F+ ++ F 
Sbjct: 561 VIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFD 620

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKE 249
              +V TY TL+ G  + G    A ++FE M  NG       C P+  T+  +I+GL   
Sbjct: 621 LVPNVVTYTTLVGGFFKAGKPERATSIFELMLMNG-------CLPNDATFHYLINGLTNT 673

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF--LCLIDG--------------L 293
           A S   +        S  N+          + L L+F  + L+DG              L
Sbjct: 674 ATSPVLIE----EKDSKENE----------RSLILDFFTMMLLDGWDQVIAAYNSVIVCL 719

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
           CK   +  A+ L   +   G + + V +  L+ GLC+ G+  E ++  +  L    L + 
Sbjct: 720 CKHGTVDTAQLLLTKMLTKGFLIDSVCFTALLHGLCHKGKSKEWRNIISCDLNKIELQTA 779

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
                   Y++ ++ +   GR+S   VI   ++      D V
Sbjct: 780 ------VKYSLTLDKYLYQGRLSEASVILQTLVEDSKFSDQV 815


>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
 gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
          Length = 695

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 144/318 (45%), Gaps = 29/318 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P + +FN+L   L + +       LF+ +N  G  PD  TYN +I   CK  ++     
Sbjct: 111 EPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVF 170

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L R+ +   +P  VT+T+LI  LC  +R+ +A  +F K+    C      Y+ L N L 
Sbjct: 171 LLERMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQ 230

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG---SANFLGFSCMAS 263
           R G  + A  ++ +M   N     VC  D  TYS ++ GL K  G    A  L    M  
Sbjct: 231 RAGKLVEASRVYSDMCRKN-----VCMTDN-TYSLVVLGLSKMDGGNVEAAKLVTEMMGK 284

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
             A +  A+                LI+GLCK  +   A+E+FQ +   G+ P VVTYN 
Sbjct: 285 KIAPDFYAYSI--------------LINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNT 330

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L+ GL +  ++ +     T F+L       G  PD  +YN++I  FC  G  +  + +F 
Sbjct: 331 LLEGLLSTAKLQDAMEL-TYFML-----DQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQ 384

Query: 384 RILPSCFTPDAVTFTSLI 401
            ++      +  T+  +I
Sbjct: 385 DMIKDGIVLNTWTYNFMI 402



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 138/321 (42%), Gaps = 31/321 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+NI+     K ++ +  L+  + +   G  P  + Y+ ++  FCK G VS    V
Sbjct: 42  PNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDV 101

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +      PD V F  L+  L    +I EA  LF  +   GC+ DV TYNT+I GLC+
Sbjct: 102 FAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCK 161

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A+ L E M   +        P  +TY+T+ID LCK              ++   
Sbjct: 162 WKKLDEAVFLLERMKQED------VSPTFVTYTTLIDHLCKFT--------RLQQAYEVF 207

Query: 268 NKMAFYFPLVRVQCLCLN--FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            KMA         C C    +  L + L +  KL  A  ++  + R  +     TY++++
Sbjct: 208 EKMA------EGPCACTEPAYSVLFNKLQRAGKLVEASRVYSDMCRKNVCMTDNTYSLVV 261

Query: 326 RGLC--NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
            GL   + G ++  K       L   +    + PD Y Y+ILIN  CK  R      +F 
Sbjct: 262 LGLSKMDGGNVEAAK-------LVTEMMGKKIAPDFYAYSILINGLCKARRPGEAKEMFQ 314

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +     +P  VT+ +L++ L
Sbjct: 315 EMRGRGISPTVVTYNTLLEGL 335



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 112/235 (47%), Gaps = 25/235 (10%)

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +L +   P+A+ + +LI  LC    + EA +   ++    C  +V +YN +I+G C+  +
Sbjct: 1   MLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQH-CAPNVVSYNIIIDGYCKARN 59

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              AL    EM     E G    P A  YS+I+   CK    +       M  F+ +   
Sbjct: 60  IEKALAFLREME----ELGHPPTPHA--YSSIVQSFCKTGNVSK-----AMDVFAEM--- 105

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
               P    +   +NF  L+ GL +  K+  ARELF+S+   G  P+VVTYN +I GLC 
Sbjct: 106 ----PAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCK 161

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
             ++D     E VFLL +R+    + P   TY  LI+  CK  R+   + +F ++
Sbjct: 162 WKKLD-----EAVFLL-ERMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKM 210



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 130/328 (39%), Gaps = 37/328 (11%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   +++IL   L K +       +F+ +   G+ P   TYN L+       ++     +
Sbjct: 288 PDFYAYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMEL 347

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L     PD  ++  +I+  CA     EA  LF  +   G  L+ +TYN +I G  +
Sbjct: 348 TYFMLDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMIVGFIK 407

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-EAGSANFLGFSCMASFS- 265
                 A  LF+ M +G  +   V  P+  TY  +I  LCK +     F   S M     
Sbjct: 408 DEAWSSAWMLFKRMQSGKND--KVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGF 465

Query: 266 ---------ALNKMA----------FYFPLVRVQCLCL--NFLCLIDGLCKISKLKIARE 304
                     L+++A           Y  + R+ C  L  +   L+DG+ +   +  A++
Sbjct: 466 VPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKD 525

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
             + +   G++P+  TY+ L+ GLC  G+ D+ +       L + L   G  P+      
Sbjct: 526 FLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARK------LVEELVRDGKRPENQGLRQ 579

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTP 392
           L+   C  G     +  +      C+ P
Sbjct: 580 LLGALCAQGDFQGAYEFY------CWLP 601



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 124/280 (44%), Gaps = 22/280 (7%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD Y Y+ILIN  CK  R      +   +     +P  VT+ +L++ L + +++ +A  L
Sbjct: 288 PDFYAYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMEL 347

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
              +   G   D  +YN +I G C  G T  A  LF++M       G+V   +  TY+ +
Sbjct: 348 TYFMLDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKD----GIVL--NTWTYNFM 401

Query: 243 IDGLCK-EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           I G  K EA S+ ++ F  M S       A              +  LI  LCK  +++ 
Sbjct: 402 IVGFIKDEAWSSAWMLFKRMQSGKNDKVPAPNM---------FTYEILISSLCKTDQVEE 452

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A +L  ++   G +P++  + +L+  L   G++D+       F L+K ++       + +
Sbjct: 453 AFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDA------FELYKEMSRINCQQLVGS 506

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            NIL++   + G V        ++  +   PD  T+  L+
Sbjct: 507 SNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLV 546



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 112/271 (41%), Gaps = 27/271 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL----NLTGLFPDRY 126
           NEA C+F  M+         T +N +     K + + +   LFKR+    N     P+ +
Sbjct: 377 NEAYCLFQDMIKDGIVLNTWT-YNFMIVGFIKDEAWSSAWMLFKRMQSGKNDKVPAPNMF 435

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           TY ILI+  CK  +V   F +L  +    F P    +  L+  L    R+ +A  L+ ++
Sbjct: 436 TYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEM 495

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
               C+  V + N L++G+ R G    A +  ++M +     G+V  PD  TY  ++ GL
Sbjct: 496 SRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDT----GIV--PDKFTYDKLVVGL 549

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN--FLCLIDGLCKISKLKIARE 304
           C + G A+                     LVR      N     L+  LC     + A E
Sbjct: 550 CWQ-GKAD-------------QARKLVEELVRDGKRPENQGLRQLLGALCAQGDFQGAYE 595

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
            +  LP  G+   +  +N L+   C   ++D
Sbjct: 596 FYCWLPSVGVEVTLGMHNTLVTSCCLARKLD 626



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 48/138 (34%), Gaps = 35/138 (25%)

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHY----------------------------ET 342
            AGL PN + YN LI  LC  G + E + Y                            E 
Sbjct: 3   EAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEK 62

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI- 401
                + +   G  P  + Y+ ++  FCK G VS    +F  +      PD V F  L+ 
Sbjct: 63  ALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLS 122

Query: 402 ------KILEINSFFRQV 413
                 KI E    FR +
Sbjct: 123 GLWRARKIHEARELFRSM 140


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 139/309 (44%), Gaps = 24/309 (7%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K         +F  +   GL P   +YN L+N + ++G +  GF +   + 
Sbjct: 134 FNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMR 193

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES + +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 194 ASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVD 253

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M            PD ITY+T++ GLCK+       G         L    F
Sbjct: 254 LAMEIYKQM------LSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKF 307

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 308 ------------TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEG 355

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           +  + +       + + + S GL PD  TY ++IN FCK G V  G  +   +  +   P
Sbjct: 356 RSXDAEK------MLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVP 409

Query: 393 DAVTFTSLI 401
             VT+  L+
Sbjct: 410 XVVTYNVLM 418



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 126/281 (44%), Gaps = 24/281 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V S+N L     +    D    L   +  +G+ PD YTY++LIN  CK   +     
Sbjct: 163 RPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANE 222

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L     P+ VTFT+LI   C   R+  A  ++ ++       D+ TYNTL+ GLC
Sbjct: 223 LFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLC 282

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A  L +EM           +PD  TY+T+IDG CKE            A+F  
Sbjct: 283 KKGDLNQAHGLIDEMXXKG------LKPDKFTYTTLIDGCCKEG--------DLDAAFEH 328

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +M        ++   + +  LI GLC+  +   A ++ + +   GL P+  TY ++I 
Sbjct: 329 RKRMI----QENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIIN 384

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
             C  G + +         L K +   G  P + TYN+L+N
Sbjct: 385 EFCKKGDVWKGSK------LLKEMQRNGHVPXVVTYNVLMN 419



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 20/247 (8%)

Query: 83  MRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           MR S  +P V ++++L   L K    D    LF  + + GL P+  T+  LI+  CK GR
Sbjct: 192 MRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGR 251

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           V     +  ++L     PD +T+ +L+  LC +  + +A  L  ++   G + D FTY T
Sbjct: 252 VDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTT 311

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+G C+ G    A    + M   N         D + Y+ +I GLC+E  S +      
Sbjct: 312 LIDGCCKEGDLDAAFEHRKRMIQEN------IRLDDVAYTALISGLCQEGRSXD------ 359

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
                   KM      V ++     +  +I+  CK   +    +L + + R G +P VVT
Sbjct: 360 ------AEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVT 413

Query: 321 YNILIRG 327
           YN+L+ G
Sbjct: 414 YNVLMNG 420



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +          L+F 
Sbjct: 102 VLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDI------RVAPLVFD 155

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G +  GF +   +  S   PD  T++ LI
Sbjct: 156 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLI 208


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 146/334 (43%), Gaps = 60/334 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA   F YM+  +   P + + N +     K    +    L+  +    +    YT+NI
Sbjct: 196 DEAFKCF-YMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNI 254

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++N  CK G++      +G +    F P+ V++ ++I    +   I  A  +   +RV G
Sbjct: 255 MVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKG 314

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            E D +TY +LI+G+C+ G    A  LF++M     E G+V  P+A+TY+T+IDG C + 
Sbjct: 315 IEPDSYTYGSLISGMCKEGRLEEASGLFDKMV----EIGLV--PNAVTYNTLIDGYCNKG 368

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                       +FS  ++M                                        
Sbjct: 369 --------DLERAFSYRDEMV--------------------------------------- 381

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           + G+MP+V TYN+L+  L  +G+M E         + K +   G+ PD  TYNILIN + 
Sbjct: 382 KKGIMPSVSTYNLLVHALFMEGRMGEADD------MIKEMRKKGIIPDAITYNILINGYS 435

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + G     F +   +L     P  VT+TSLI +L
Sbjct: 436 RCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVL 469



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 144/321 (44%), Gaps = 30/321 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   ++  L   + K    +    LF ++   GL P+  TYN LI+ +C  G +   F 
Sbjct: 316 EPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFS 375

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
               +++    P   T+  L+  L  E R+ EA  +  ++R  G   D  TYN LING  
Sbjct: 376 YRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 435

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G+   A +L  EM +         EP  +TY+++I  L +                + 
Sbjct: 436 RCGNAKKAFDLHNEMLSKG------IEPTHVTYTSLIYVLSRR---------------NR 474

Query: 267 LNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           + +    F  +  Q +    + F  ++DG C    ++ A  L + + R  + P+ VT+N 
Sbjct: 475 MKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNT 534

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++G C +G+++E +      +L   +   G+ PD  +YN LI+ + + G +   F +  
Sbjct: 535 LMQGRCREGKVEEAR------MLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRD 588

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +L   F P  +T+ +LIK L
Sbjct: 589 EMLSIGFNPTLLTYNALIKCL 609



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 110/278 (39%), Gaps = 53/278 (19%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V+++N+L   L           + K +   G+ PD  TYNILIN + + G     F +
Sbjct: 387 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDL 446

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF----------- 196
              +L     P  VT+TSLI  L   +R+ EA  LF K+   G   DV            
Sbjct: 447 HNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCA 506

Query: 197 ------------------------TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
                                   T+NTL+ G CR G    A  L +EM           
Sbjct: 507 NGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRG------I 560

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
           +PD I+Y+T+I G  +     +        +F   ++M      +      L +  LI  
Sbjct: 561 KPDHISYNTLISGYGRRGDIKD--------AFRVRDEMLS----IGFNPTLLTYNALIKC 608

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
           LCK  +  +A EL + +   G+ P+  TY  LI G+ N
Sbjct: 609 LCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGN 646



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 7/175 (4%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F+ +L+   S P V  FN +        + +    L K ++   + PD  T+N L
Sbjct: 477 EADDLFEKILDQGVS-PDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTL 535

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   C+ G+V    ++L  + R    PD +++ +LI        I +A  +  ++   G 
Sbjct: 536 MQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGF 595

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              + TYN LI  LC+     +A  L +EM N          PD  TY ++I+G+
Sbjct: 596 NPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKG------ISPDDSTYLSLIEGM 644


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 137/314 (43%), Gaps = 49/314 (15%)

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           T + +I   CK GRV     +L  +++  + PD  T + LI +LC   +I EA      +
Sbjct: 51  TCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGM 110

Query: 187 ------RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
                 R   C    F+YN+L+N LC+      A  +F  M +   E  VV  PD ++YS
Sbjct: 111 NRTISTRASSC----FSYNSLLNSLCKAKKVHQAFAIFSTMVS---ERSVV--PDVVSYS 161

Query: 241 TIIDGLCK--EAGSA-----NFLGFSCMASFSALN--------------KMAFYFPLVRV 279
            +IDG CK  E G A       +  +C+ + +  N                  Y  ++  
Sbjct: 162 ILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISA 221

Query: 280 QCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            C    + +  LI G     K   A ELF+++   G  PN VTYN L+ GLC + + DE 
Sbjct: 222 GCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEA 281

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
                   LF+++   G  PD  TY  L+  FC +G++     +F  ++     PD V +
Sbjct: 282 HE------LFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAY 335

Query: 398 TSLIKILEINSFFR 411
             L+K      FFR
Sbjct: 336 NCLLK-----GFFR 344



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 153/336 (45%), Gaps = 27/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +F  M++ R   P V S++IL     K         L+K++      P+  TYN 
Sbjct: 138 HQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNA 197

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            +N   + GR++    V   ++ +  +PD +T+++LI       +  +A  LF  +   G
Sbjct: 198 FLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRG 257

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +  TYN L++GLC+      A  LF +M     E G  C+PD +TY+T++ G C   
Sbjct: 258 CRPNAVTYNCLLHGLCKESKPDEAHELFRKMV----ERG--CDPDKVTYTTLLYGFCNVG 311

Query: 251 GSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                +  F  M S         + P V      + + CL+ G  +  K   AR+LFQ +
Sbjct: 312 KIEQAVEVFDEMVSKG-------HDPDV------VAYNCLLKGFFRAGKPGEARQLFQVM 358

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST-GLFPDLYTYNILINC 368
                 P+ V++NI+I GL    ++D+         +F+R+    G  PDL TYN LI  
Sbjct: 359 VSRECKPDTVSHNIMIDGLSKAKRLDD------AVEVFERMEQDHGCSPDLVTYNSLIFG 412

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            C   R+S    +F  I     +PD   F  L++ +
Sbjct: 413 LCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAM 448



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 4/142 (2%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+ VFD M++ +   P V ++N L     +         LF+ +      PD  ++NI
Sbjct: 314 EQAVEVFDEMVS-KGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNI 372

Query: 131 LINCFCKMGRVSHGFVVLGRILRS--CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           +I+   K  R+     V  R+ +   C +PD VT+ SLI  LC E R+ EA  +F ++  
Sbjct: 373 MIDGLSKAKRLDDAVEVFERMEQDHGC-SPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDR 431

Query: 189 FGCELDVFTYNTLINGLCRTGH 210
                D   +N L+  +   GH
Sbjct: 432 LKLSPDPHAFNVLLEAMYAAGH 453


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 149/334 (44%), Gaps = 35/334 (10%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL +F+ +L      P V ++ IL          D  + L   +   GL PD  TYN +I
Sbjct: 192 ALEIFEELLK-DNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAII 250

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
              CK   V   F +L  +      PD +T+  L++ L +  +  E   L +++   GC+
Sbjct: 251 RGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCK 310

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG- 251
            +V T++ LI  LCR G    A+NL   M     E G+  +PDA  Y  +I G C+E   
Sbjct: 311 PNVVTHSILIGTLCRDGKVEEAVNLLRSMK----EKGL--KPDAYCYDPLIAGFCREGRL 364

Query: 252 --SANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQ 307
             +  FL +                 ++   CL   +N+  ++ GLC+  K   A E+F+
Sbjct: 365 DLATEFLEY-----------------MISDGCLPDIVNYNTIMAGLCRTGKADQALEVFE 407

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            L   G  PNV +YN L   L + G       Y  + ++ K LN  G+ PD  TYN LI+
Sbjct: 408 KLDEVGCPPNVSSYNTLFSALWSSGD-----RYRALEMILKLLNQ-GIDPDEITYNSLIS 461

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           C C+ G V     +   +    + P+ V++  ++
Sbjct: 462 CLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIIL 495



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 137/318 (43%), Gaps = 26/318 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++NI+ G        D  L +F+ L      P   TY ILI      G +     +
Sbjct: 171 PDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKL 230

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L     PD +T+ ++I+ +C E  + +A  L   L   GC+ D+ TYN L+  L  
Sbjct: 231 LDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLS 290

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G       L  EM        + C+P+ +T+S +I  LC++      +          L
Sbjct: 291 RGKWSEGEKLISEM------ISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGL 344

Query: 268 NKMAF-YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
              A+ Y PL             I G C+  +L +A E  + +   G +P++V YN ++ 
Sbjct: 345 KPDAYCYDPL-------------IAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMA 391

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G+ D+         +F++L+  G  P++ +YN L +     G       +  ++L
Sbjct: 392 GLCRTGKADQ------ALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLL 445

Query: 387 PSCFTPDAVTFTSLIKIL 404
                PD +T+ SLI  L
Sbjct: 446 NQGIDPDEITYNSLISCL 463



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 157/360 (43%), Gaps = 32/360 (8%)

Query: 50  EQFLKERCKSSG-------EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAK 102
           E+ LK+ C+ +        E  I     + A+ + D ML+ +   P   ++N +   + K
Sbjct: 197 EELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLS-KGLEPDTLTYNAIIRGMCK 255

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
               D    L + L+  G  PD  TYNIL+      G+ S G  ++  ++     P+ VT
Sbjct: 256 EMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVT 315

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
            + LI  LC + ++ EA  L   ++  G + D + Y+ LI G CR G   +A    E M 
Sbjct: 316 HSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMI 375

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
           +        C PD + Y+TI+ GLC+  G A+      +  F  L+++    P V     
Sbjct: 376 SDG------CLPDIVNYNTIMAGLCR-TGKAD----QALEVFEKLDEVGCP-PNVS---- 419

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
             ++  L   L        A E+   L   G+ P+ +TYN LI  LC DG +DE      
Sbjct: 420 --SYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIE--- 474

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
              L   + S    P++ +YNI++   CK+ R +    +   +      P+  T+  LI+
Sbjct: 475 ---LLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIE 531



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 125/287 (43%), Gaps = 28/287 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V + +IL G L +    +  ++L + +   GL PD Y Y+ LI  FC+ GR+     
Sbjct: 310 KPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATE 369

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L  ++     PD V + +++  LC   +  +A  +F KL   GC  +V +YNTL + L 
Sbjct: 370 FLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALW 429

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            +G    AL +  ++ N         +PD ITY+++I  LC++           M   + 
Sbjct: 430 SSGDRYRALEMILKLLNQG------IDPDEITYNSLISCLCRDG----------MVDEAI 473

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
              +       R   +  N + L  GLCK+++   A E+  ++   G  PN  TY +LI 
Sbjct: 474 ELLVDMQSGRYRPNVVSYNIILL--GLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIE 531

Query: 327 GLCNDGQMDETKHYETVFL--------LFKRLNSTGLFPDLYTYNIL 365
           G+   G   E                  F RLN T  FP L  Y  L
Sbjct: 532 GIGFSGLRAEAMELANSLHGMNAISEDSFNRLNKT--FPLLDVYKDL 576



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 122/282 (43%), Gaps = 25/282 (8%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  PD      LI  F     +     V+  IL     PD   + +LI      +++  A
Sbjct: 99  GYTPDVILCTKLIKGFFNSRNIGKATRVM-EILERYGKPDVFAYNALISGFIKANQLENA 157

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             +  +++  G   DV TYN +I   C  G   +AL +FEE+   N      CEP  ITY
Sbjct: 158 NRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDN------CEPTVITY 211

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           + +I+        A  L      +   L++M        ++   L +  +I G+CK   +
Sbjct: 212 TILIE--------ATILDGGIDVAMKLLDEMLSK----GLEPDTLTYNAIIRGMCKEMMV 259

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A EL +SL   G  P+++TYNIL+R L + G+  E +       L   + S G  P++
Sbjct: 260 DKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEK------LISEMISIGCKPNV 313

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            T++ILI   C+ G+V     +   +      PDA  +  LI
Sbjct: 314 VTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLI 355



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 1/156 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL VF+  L+     P V+S+N LF  L  +      L +  +L   G+ PD  TYN 
Sbjct: 400 DQALEVFE-KLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNS 458

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+C C+ G V     +L  +    + P+ V++  ++  LC  +R  +A  +   +   G
Sbjct: 459 LISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKG 518

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226
           C+ +  TY  LI G+  +G    A+ L   +   N 
Sbjct: 519 CQPNETTYILLIEGIGFSGLRAEAMELANSLHGMNA 554



 Score = 47.4 bits (111), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 28/147 (19%)

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND------------ 331
           ++ + L++  C+  K   +    + +   G  P+V+    LI+G  N             
Sbjct: 70  VHLMKLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEI 129

Query: 332 ----GQMD------------ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
               G+ D            +    E    +  R+ S G  PD+ TYNI+I  FC  G++
Sbjct: 130 LERYGKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKL 189

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIK 402
                IF  +L     P  +T+T LI+
Sbjct: 190 DLALEIFEELLKDNCEPTVITYTILIE 216


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 147/352 (41%), Gaps = 60/352 (17%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY------------------- 126
           ++P V ++NI+  C+ K    +    LF+ +   GL PD                     
Sbjct: 91  AKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTV 150

Query: 127 ----------------TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
                           TYN LINCFCK G++  G      + R+   P+ V++++L+   
Sbjct: 151 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAF 210

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
           C E  + +A   +  +R  G   + +TY +LI+  C+ G+   A  L  EM     E+ V
Sbjct: 211 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNV 270

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
           V      TY+ +IDGLC        L          L++M      + ++   + F  LI
Sbjct: 271 V------TYTALIDGLCGWENPTEGLHL--------LDEMV----ELDIKVTVVTFCVLI 312

Query: 291 DGLCKISKLKIARELFQSLPRA-GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           DGLCK   +  A + F  +    GL  N   Y  +I GLC   Q+      E    LF++
Sbjct: 313 DGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQV------EAATTLFEQ 366

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +   GL PD   Y  L++   K G V     +  +++ +    D + +TSL+
Sbjct: 367 MAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLV 418



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 143/336 (42%), Gaps = 30/336 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+  F  M   R   P   S N L    AK    D V   FK +   G  P  +TYNI+
Sbjct: 43  EAIQCFSKMKRFR-VFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIM 101

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+C CK G V     +   +      PD VT+ S+I       R+ +    F +++   C
Sbjct: 102 IDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 161

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           E DV TYN LIN  C+ G     L  F EM   NG      +P+ ++YST++D  CKE  
Sbjct: 162 EPDVITYNALINCFCKFGKLPKGLEFFREMKR-NG-----LKPNVVSYSTLVDAFCKE-- 213

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSL 309
                G    A       + FY  + RV  +     +  LID  CKI  L  A  L   +
Sbjct: 214 -----GMMQQA-------IKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEM 261

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            + G+  NVVTY  LI GLC      E  H      L   +    +   + T+ +LI+  
Sbjct: 262 LQVGVEWNVVTYTALIDGLCGWENPTEGLH------LLDEMVELDIKVTVVTFCVLIDGL 315

Query: 370 CKIGRVSSGFVIFGRILPS-CFTPDAVTFTSLIKIL 404
           CK   VS     FGRI        +A  +T++I  L
Sbjct: 316 CKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGL 351



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 151/367 (41%), Gaps = 46/367 (12%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGD+ +     A  +F+ M   R   P   ++N +     K    D  +  F+ +     
Sbjct: 108 EGDVEA-----ARGLFEEM-KFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 161

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TYN LINCFCK G++  G      + R+   P+ V++++L+   C E  + +A  
Sbjct: 162 EPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIK 221

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
            +  +R  G   + +TY +LI+  C+ G+   A  L  EM     E+ VV      TY+ 
Sbjct: 222 FYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVV------TYTA 275

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALN-KMAFYFPLVRVQCLCLN--------------- 285
           +IDGLC         G   +     L+ K+      V +  LC N               
Sbjct: 276 LIDGLCGWENPTE--GLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISN 333

Query: 286 ----------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                     +  +IDGLCK ++++ A  LF+ + + GL+P+   Y  L+ G    G + 
Sbjct: 334 DFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVL 393

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           E         L  ++  TG+  DL  Y  L+       ++         ++     PD V
Sbjct: 394 E------ALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEV 447

Query: 396 TFTSLIK 402
              S++K
Sbjct: 448 LCISVLK 454



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 141/334 (42%), Gaps = 68/334 (20%)

Query: 76  VFDYMLNMRPS-RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           VFD + + R    P    F+ LF  L      +  +  F ++    +FP   + N L++ 
Sbjct: 10  VFDVLWSTRNVCVPGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHK 69

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
           F K+G+                  D V      KD+                   G +  
Sbjct: 70  FAKLGKT-----------------DGVK--RFFKDMIGA----------------GAKPT 94

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF-GVVCEPDAITYSTIIDGLCKEAGSA 253
           VFTYN +I+ +C+ G    A  LFEEM     +F G++  PD +TY+++IDG  K     
Sbjct: 95  VFTYNIMIDCMCKEGDVEAARGLFEEM-----KFRGLI--PDTVTYNSMIDGFGK----- 142

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLP 310
                        L+    +F  ++  C     + +  LI+  CK  KL    E F+ + 
Sbjct: 143 ----------VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMK 192

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           R GL PNVV+Y+ L+   C +G M      +     +  +   GL P+ YTY  LI+ +C
Sbjct: 193 RNGLKPNVVSYSTLVDAFCKEGMM------QQAIKFYVDMRRVGLVPNEYTYTSLIDAYC 246

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           KIG +S  F +   +L      + VT+T+LI  L
Sbjct: 247 KIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGL 280


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++ +M + +        PD ITY+T+I GLCK+             +   +++M+ 
Sbjct: 259 LAMEIYRQMLSQS------LLPDLITYNTLIYGLCKKG--------DLKQAHDLIDEMS- 303

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 304 ---MKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN  CK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYV 413

Query: 392 PDAVT 396
           P+ VT
Sbjct: 414 PNVVT 418



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 130/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD +      RP V SFN L     K    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFDSITKW-GLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLL 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG------LKPDKITYTTLIDGXCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLETAFEYRKRMI----KENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P++ T
Sbjct: 376 GLKPEIGTYTMIINEXCKKGDV------WTGSKLLKEMQRXGYVPNVVT 418



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 139/317 (43%), Gaps = 28/317 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R P  +   +   L K K++  V   ++     G     Y +NIL++ FCK G +     
Sbjct: 98  RVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHXFCKEGEIRLAQS 157

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   I +    P  V+F +L+        + E   L + ++  G   DV+TY+ LINGLC
Sbjct: 158 VFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLC 217

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      A  LF+EM B     G+V  P+ +T++T+IDG CK  G  +            
Sbjct: 218 KESKMDDANELFDEMLBN----GLV--PNXVTFTTLIDGHCKN-GRVDL----------- 259

Query: 267 LNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
              M  Y  ++    L   + +  LI GLCK   LK A +L   +   GL P+ +TY  L
Sbjct: 260 --AMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 317

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I G C +G +      ET F   KR+    +  D   Y  LI+  C+ GR      +   
Sbjct: 318 IDGXCKEGDL------ETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLRE 371

Query: 385 ILPSCFTPDAVTFTSLI 401
           +L     P+  T+T +I
Sbjct: 372 MLSVGLKPEIGTYTMII 388


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 162/366 (44%), Gaps = 57/366 (15%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  ++D M+  R   P V ++  +   L +         LF  +   G+ P++YTYN+L
Sbjct: 196 KAQEMWDQMV-ARQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVL 254

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  C+   V+  FV+   +L S   P+AV FT+LI   C   R  EA  +F  +  FG 
Sbjct: 255 MSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGV 314

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              V  YN+L++G  R+G    AL+L++EM       G+   PD  T S ++ GLC    
Sbjct: 315 APTVPVYNSLMDGAFRSGDAQEALSLYQEMT----RLGLC--PDEFTCSIVVRGLCDGGQ 368

Query: 252 ---SANFLGFSCMASFSALNKMAF---------------------YFPLVRVQCLCLNFL 287
              +A FL          LN  A+                         V V+   +++ 
Sbjct: 369 IQVAARFLE-GVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYS 427

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LIDG  K+ K++IA  ++  +   G+ PNVVTY  LI G   +G +D        F   
Sbjct: 428 SLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGID------AAFRFH 481

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT---SLIKIL 404
           K +   G+ P+  T ++L++  C+  RV                 DAV F    S IK  
Sbjct: 482 KEMIENGISPNAITVSVLVDGLCRENRVQ----------------DAVRFVMEHSGIKYS 525

Query: 405 EINSFF 410
           +I+SFF
Sbjct: 526 DIHSFF 531



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 157/361 (43%), Gaps = 51/361 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL VF  +  +    P + + N +   L K +       LF  +   G+ P   TYN 
Sbjct: 128 DEALYVFRRLWTL----PALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNT 183

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN     G V+    +  +++     P+ +T+TS+I  LC E  I +A  LF  ++  G
Sbjct: 184 LINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAG 243

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              + +TYN L++G C+      A  L++E+ N     G++  P+A+ ++T+IDG CK  
Sbjct: 244 MRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNS----GLI--PNAVVFTTLIDGFCKA- 296

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                        FS    M    P   V      +  L+DG  +    + A  L+Q + 
Sbjct: 297 -----------KRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMT 345

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHY-----------------------------E 341
           R GL P+  T +I++RGLC+ GQ+     +                             E
Sbjct: 346 RLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLE 405

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                  R+   G+ P++ +Y+ LI+   K+G++     I+  ++     P+ VT+T+LI
Sbjct: 406 EALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALI 465

Query: 402 K 402
            
Sbjct: 466 H 466



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 120/279 (43%), Gaps = 40/279 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  +N L     ++      LSL++ +   GL PD +T +I++   C  G++      
Sbjct: 316 PTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARF 375

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +       +A  + +LI + C    + EA A  T++   G E +V +Y++LI+G  +
Sbjct: 376 LEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSK 435

Query: 208 TGHTIVALNLFEEMANGNGEFGVVC-----------------------------EPDAIT 238
            G   +A+ ++ EM     E  VV                               P+AIT
Sbjct: 436 LGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAIT 495

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF--------PLVRVQCLCLNFLCLI 290
            S ++DGLC+E    + + F    S    + +  +F        PL+    +   ++ LI
Sbjct: 496 VSVLVDGLCRENRVQDAVRFVMEHSGIKYSDIHSFFSNFTTEEEPLIPNSAI---YMTLI 552

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
            GL    +   A +LF  + ++G++ +  TY +LIRG C
Sbjct: 553 YGLYLDGQHYEAGKLFSYMRKSGMISDSFTYTLLIRGQC 591



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 69/187 (36%), Gaps = 52/187 (27%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V S++ L    +K       ++++  +   G+ P+  TY  LI+   K G +   F 
Sbjct: 420 EPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFR 479

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIM----------------------------- 177
               ++ +  +P+A+T + L+  LC E+R+                              
Sbjct: 480 FHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVMEHSGIKYSDIHSFFSNFTTEEE 539

Query: 178 -----------------------EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA 214
                                  EA  LF+ +R  G   D FTY  LI G C  G+ + A
Sbjct: 540 PLIPNSAIYMTLIYGLYLDGQHYEAGKLFSYMRKSGMISDSFTYTLLIRGQCMLGYVLNA 599

Query: 215 LNLFEEM 221
           + L+ +M
Sbjct: 600 MMLYADM 606



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
           +S++ +  E      R   +P +   N ++ GL       + +     + LF  +   G+
Sbjct: 121 LSQMGLLDEALYVFRRLWTLPALPACNAVLDGLV------KARRSRCAWELFDEMLRRGM 174

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            P + TYN LIN     G V+    ++ +++     P+ +T+TS+I +L
Sbjct: 175 VPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVL 223


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 159/368 (43%), Gaps = 46/368 (12%)

Query: 49  LEQFLKERCKSSG-------EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA 101
           L Q L + C+ +        E  +     +EAL + D ML+ R  +P + ++N +   + 
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS-RGLKPDMFTYNTIIRGMC 274

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K    D    + + L L G  PD  +YNIL+      G+   G  ++ ++      P+ V
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           T++ LI  LC + +I EA  L   ++  G   D ++Y+ LI   CR G   VA+   E M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-------SCMASFSALNKMAFYF 274
            +        C PD + Y+T++  LCK   +   L          C  + S+ N M    
Sbjct: 395 ISDG------CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTM---- 444

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
                      F  L     KI  L +  E+  +    G+ P+ +TYN +I  LC +G +
Sbjct: 445 -----------FSALWSSGDKIRALHMILEMMSN----GIDPDEITYNSMISCLCREGMV 489

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           DE       F L   + S    P + TYNI++  FCK  R+     +   ++ +   P+ 
Sbjct: 490 DE------AFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNE 543

Query: 395 VTFTSLIK 402
            T+T LI+
Sbjct: 544 TTYTVLIE 551



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 144/348 (41%), Gaps = 49/348 (14%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++N L     K    D    +  R+      PD  TYNI+I   C  G++     
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL ++L     P  +T+T LI+    E  + EA  L  ++   G + D+FTYNT+I G+C
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274

Query: 207 RTG-----------------------HTIVALNLFEEMANGNGE------FGVVCEPDAI 237
           + G                       + I+   L  +     GE      F   C+P+ +
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF-YFPLVRVQCLCLNFLCLIDGLCKI 296
           TYS +I  LC++      +    +     L   A+ Y PL             I   C+ 
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPL-------------IAAFCRE 381

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            +L +A E  +++   G +P++V YN ++  LC +G+ D+         +F +L   G  
Sbjct: 382 GRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ------ALEIFGKLGEVGCS 435

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           P+  +YN + +     G       +   ++ +   PD +T+ S+I  L
Sbjct: 436 PNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCL 483



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 131/301 (43%), Gaps = 27/301 (8%)

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           ++ +Y   L L + +   G  PD      LI  F  +  +     V+  IL     PD  
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVF 159

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            + +LI   C  +RI +A  +  ++R      D  TYN +I  LC  G   +AL +  ++
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-SCMASFSALNKMAFYFPLVRVQ 280
            + N      C+P  ITY+ +I+    E G    L     M S      M  Y  ++R  
Sbjct: 220 LSDN------CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIR-- 271

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
                      G+CK   +  A E+ ++L   G  P+V++YNIL+R L N G+ +E +  
Sbjct: 272 -----------GMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEK- 319

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                L  ++ S    P++ TY+ILI   C+ G++     +   +     TPDA ++  L
Sbjct: 320 -----LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPL 374

Query: 401 I 401
           I
Sbjct: 375 I 375



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 26/245 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++IL   L +    +  ++L K +   GL PD Y+Y+ LI  FC+ GR+      
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     PD V + +++  LC   +  +A  +F KL   GC  +  +YNT+ + L  
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 450

Query: 208 TGHTIVALNL-FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +G  I AL++  E M+NG        +PD ITY+++I  LC+E             +F  
Sbjct: 451 SGDKIRALHMILEMMSNG-------IDPDEITYNSMISCLCREG--------MVDEAFEL 495

Query: 267 LNKM---AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           L  M    F+  +V    + L       G CK  +++ A  + +S+   G  PN  TY +
Sbjct: 496 LVDMRSCEFHPSVVTYNIVLL-------GFCKAHRIEDAINVLESMVGNGCRPNETTYTV 548

Query: 324 LIRGL 328
           LI G+
Sbjct: 549 LIEGI 553



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  +S+N +F  L  +      L +   +   G+ PD  TYN +I+C C+ G V   F +
Sbjct: 436 PNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFEL 495

Query: 148 LGRILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L   +RSC F P  VT+  ++   C   RI +A  +   +   GC  +  TY  LI G+ 
Sbjct: 496 LVD-MRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIG 554

Query: 207 RTGHTIVALNLFEEM 221
             G+   A+ L  ++
Sbjct: 555 FAGYRAEAMELANDL 569


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 148/319 (46%), Gaps = 27/319 (8%)

Query: 83  MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142
            R  +P V ++ +L   + K+  +   +++   +   G  P+  TYN++IN  C+ GRV 
Sbjct: 180 QRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 239

Query: 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202
               +L R+    F PD V++T+++K LCA  R  +   LF ++    C  +  T++ L+
Sbjct: 240 DAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLV 299

Query: 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA 262
              CR G    A+ + ++M+         C P+    + +I+ +CK+    +   F    
Sbjct: 300 RFFCRGGMVERAIQVLQQMSQHG------CTPNTTLCNIVINAICKQGRVDDAYDF---- 349

Query: 263 SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
               LN M  Y          +++  ++ GLC+  + + A+EL   + R    PN VT+N
Sbjct: 350 ----LNNMGMY----GCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFN 401

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
             I  LC  G +      E    L + +   G    + TYN L++ FC  GRV S   +F
Sbjct: 402 TFICILCQKGLI------EQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELF 455

Query: 383 GRILPSCFTPDAVTFTSLI 401
              LP    P+ +T+T+L+
Sbjct: 456 NN-LPC--EPNTITYTTLL 471



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 142/338 (42%), Gaps = 32/338 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + S+  +   L   + +D V  LF  +      P+  T+++L+  FC+ G V     
Sbjct: 254 QPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQ 313

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL ++ +   TP+      +I  +C + R+ +A      + ++GC  D  +Y T++ GLC
Sbjct: 314 VLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLC 373

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-SCMASFS 265
           R G    A  L  EM   N      C P+ +T++T I  LC++      +     M  + 
Sbjct: 374 RAGRWEHAKELLPEMVRKN------CPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYG 427

Query: 266 ALNKMAFYFPLVRVQCL-------------------CLNFLCLIDGLCKISKLKIARELF 306
               +  Y  LV   C+                    + +  L+ GLC   +L  A EL 
Sbjct: 428 CSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLLTGLCHAERLDAAAELL 487

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             + +     N VT+N+L+   C  G ++E         L  ++   G  P+L T+N L+
Sbjct: 488 AEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAME------LVNQMMEHGCTPNLITFNTLL 541

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +   K         +   ++    + D +T++S++ +L
Sbjct: 542 DGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVL 579



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 142/349 (40%), Gaps = 38/349 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T  NI+   + K    D        + + G  PD  +Y  ++   C+ GR  H   +
Sbjct: 325 PNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKEL 384

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++R    P+ VTF + I  LC +  I +A  L   +  +GC + + TYN L++G C 
Sbjct: 385 LPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCV 444

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSA---------- 253
            G    AL LF  +          CEP+ ITY+T++ GLC     +A +           
Sbjct: 445 QGRVDSALELFNNLP---------CEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDC 495

Query: 254 --NFLGFSCMASFSAL-----NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARE 304
             N + F+ + SF          M     ++   C    + F  L+DG+ K    + A E
Sbjct: 496 PLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALE 555

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           L   L   G+  + +TY+ ++  L  + + +E         +   +   G+ P +  YN 
Sbjct: 556 LLHGLVSKGVSLDTITYSSVVDVLSREDRTEE------AIQMLHAVQDMGMRPKVGMYNK 609

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           ++   CK          F  ++ +   P+  T+  LI+ L      ++ 
Sbjct: 610 ILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 658



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 6/119 (5%)

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           + +  L++ +CK S    A  +   +   G  PN+VTYN++I G+C +G++D+ K     
Sbjct: 188 VTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKE---- 243

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             +  RL+S G  PD+ +Y  ++   C   R     V+F  ++     P+ VTF  L++
Sbjct: 244 --ILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVR 300



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 88/181 (48%), Gaps = 23/181 (12%)

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
           C+P  +TY+ +++ +CK +G           + + L++M        +    + +  +I+
Sbjct: 183 CQPSVVTYTVLLEAVCKSSGFGE--------AMNVLDEMRAKGCTPNI----VTYNVIIN 230

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
           G+C+  ++  A+E+   L   G  P++V+Y  +++GLC   + D+ K      +LF  + 
Sbjct: 231 GMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVK------VLFAEMV 284

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411
                P+  T+++L+  FC+ G V     +  ++     TP+    T+L  I+ IN+  +
Sbjct: 285 DKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPN----TTLCNIV-INAICK 339

Query: 412 Q 412
           Q
Sbjct: 340 Q 340



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 97/260 (37%), Gaps = 53/260 (20%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           + N  P  P   ++  L   L   +  D    L   +       +  T+N+L++ FC+ G
Sbjct: 454 LFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKG 513

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            V     ++ +++    TP+ +TF +L+  +  +    EA  L   L   G  LD  TY+
Sbjct: 514 FVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYS 573

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           ++++ L R   T  A+    +M +   + G+   P    Y+ I+  LCK   +   + F 
Sbjct: 574 SVVDVLSREDRTEEAI----QMLHAVQDMGM--RPKVGMYNKILFALCKRCETDQAIDF- 626

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
                                                         F  +   G MPN  
Sbjct: 627 ----------------------------------------------FAYMVSNGCMPNES 640

Query: 320 TYNILIRGLCNDGQMDETKH 339
           TY ILI GL ++G + E ++
Sbjct: 641 TYIILIEGLAHEGLLKEARY 660



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G  P+VVTY +L+  +C      E  +      +   + + G  P++ TYN++IN  C+ 
Sbjct: 182 GCQPSVVTYTVLLEAVCKSSGFGEAMN------VLDEMRAKGCTPNIVTYNVIINGMCRE 235

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           GRV     I  R+    F PD V++T+++K L
Sbjct: 236 GRVDDAKEILNRLSSYGFQPDIVSYTTVLKGL 267


>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
 gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
          Length = 641

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 159/349 (45%), Gaps = 34/349 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + D M  +    P   +FN+L   L K      V  L   + L G  P+  TYN 
Sbjct: 221 DEAVSLLDEM-QIDGCFPSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNT 279

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C  G++     +L R++ S   P+ VT+ ++I  L  + R ++ A +   +   G
Sbjct: 280 LIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARVLALMEERG 339

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             ++ + Y+ LI+GL + G +  A+ LF+EM          CE + I YS +IDGLC++ 
Sbjct: 340 YHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKE------CELNTIVYSAVIDGLCRDG 393

Query: 251 GSANFLG-FSCMA---------SFSALNKMAF----------YFPLVRVQCLCLNFLC-- 288
                L   S M          ++S+L K  F           +  +       N +C  
Sbjct: 394 KPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYS 453

Query: 289 -LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI GLCK  K+K A  ++  +   G  P+VV Y  +I GL N G +++        +L 
Sbjct: 454 VLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMINGLSNAGLVEDALQLYNE-MLC 512

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
           +  +S    PD+ TYNIL+N  CK   +S    +   +L     PD VT
Sbjct: 513 QEPDSQ---PDVVTYNILLNALCKQSSISRAIDLLNSMLDRGCDPDLVT 558



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 152/340 (44%), Gaps = 41/340 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +FN++   + K    D  + +F+ + ++   PD YTY  L++  CK  R+     +
Sbjct: 167 PNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAVSL 226

Query: 148 LGRI-LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L  + +  CF P  VTF  LI  LC +  +   A L   + + GC  +  TYNTLI+GLC
Sbjct: 227 LDEMQIDGCF-PSPVTFNVLINGLCKKGDLARVAKLVDNMFLKGCAPNEVTYNTLIHGLC 285

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA---- 262
             G    A++L + M +        C P+ +TY TII+GL K+  + +  G   +A    
Sbjct: 286 LKGKLEKAISLLDRMVSSK------CVPNVVTYGTIINGLVKQGRALD--GARVLALMEE 337

Query: 263 --------SFSAL-----------NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKI 301
                    +SAL             M  +  +   +C    + +  +IDGLC+  K   
Sbjct: 338 RGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDE 397

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A E+   +      PN  TY+ L++G    G      +      ++K +       +   
Sbjct: 398 ALEVLSEMTNNRCKPNAYTYSSLMKGFFEAG------NGHKAIEMWKDMAKHNFTQNEVC 451

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           Y++LI+  CK G+V    +++ ++L     PD V + S+I
Sbjct: 452 YSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMI 491



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 120/276 (43%), Gaps = 47/276 (17%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
            +P+ +TF  +IK +C    + +A  +F  + V  C+ DV+TY TL++GLC+      A+
Sbjct: 165 ISPNVLTFNLVIKTMCKVGLVDDAVQMFRDMPVSKCQPDVYTYCTLMDGLCKADRIDEAV 224

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
           +L +EM          C P  +T++ +I+GLCK+           +A  + L    F   
Sbjct: 225 SLLDEMQIDG------CFPSPVTFNVLINGLCKKGD---------LARVAKLVDNMFLKG 269

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ-- 333
               +   + +  LI GLC   KL+ A  L   +  +  +PNVVTY  +I GL   G+  
Sbjct: 270 CAPNE---VTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRAL 326

Query: 334 --------MDETKHY-------------------ETVFLLFKRLNSTGLFPDLYTYNILI 366
                   M+E  ++                   +    LFK +       +   Y+ +I
Sbjct: 327 DGARVLALMEERGYHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVI 386

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +  C+ G+      +   +  +   P+A T++SL+K
Sbjct: 387 DGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMK 422


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 142/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + ++G +  GF +   + 
Sbjct: 139 FNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++  A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------VTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYV 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 129/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP   SFN L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++ +   +   +L +   P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD +TY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKVTYTTLIDGSCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLETAFEYRKRMI----KENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLMKEMQRDGYVPSVVT 418



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 29/142 (20%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-------DETKHY- 340
           +++ L K+   K+    ++     G   ++  +NIL+   C +G++       D    + 
Sbjct: 107 VLEHLMKLKYFKLVWGFYEDSLECGYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWG 166

Query: 341 ---------------------ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                                +  F L   + ++G+ PD+YTY++LIN  CK  ++    
Sbjct: 167 LRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYAN 226

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  +L +   P+ VTFT+LI
Sbjct: 227 ELFNEMLDNGLVPNGVTFTTLI 248


>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Glycine max]
          Length = 875

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 152/356 (42%), Gaps = 35/356 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  V D M+  +   P   ++NI+   L +         L   +   G++PD   Y+ L
Sbjct: 346 EARLVLDEMV-AKGIEPNAYTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTL 404

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ +C  G+V     VL  ++R+   P+  T  +L+  L  E R +EA  +  K+     
Sbjct: 405 LHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCY 464

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMA--------NGNGEFGVV--------CEPD 235
           + D  T N ++NGLCR G    A  +  EM          GN    ++        C PD
Sbjct: 465 QPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPD 524

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
            ITY+T+I+GLCK            +       K         ++   + +   I   CK
Sbjct: 525 GITYTTLINGLCK------------VGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCK 572

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
             K+  A  + + + R G    + TYN LI GL ++ Q+ E      ++ L   +   G+
Sbjct: 573 QGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFE------IYGLKDEMKEKGI 626

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411
            PD+ TYN +I C C+ G+      +   +L    +P+  +F  LIK    +S F+
Sbjct: 627 SPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSSDFK 682



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 152/344 (44%), Gaps = 33/344 (9%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           ++  ML  R + P   +FN+L   L +++ +D  L LF+++   G  P+ +T  IL+   
Sbjct: 137 LYSDMLAARVA-PQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGL 195

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C+ G V     ++     SC   + V + +L+   C E    EA  L  ++   G   DV
Sbjct: 196 CRAGLVKQALELVNNN-NSCRIANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDV 254

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            T+N+ I+ LCR G  + A  +F +M   + E G+   P+ +T++ ++ G CK     + 
Sbjct: 255 VTFNSRISALCRAGKVMEASRIFRDM-QMDAELGLP-RPNVVTFNLMLKGFCKHGMMGDA 312

Query: 256 LGF-SCMASFSALNKMAFY----FPLVR------------------VQCLCLNFLCLIDG 292
            G    M      + +  Y      L+R                  ++     +  ++DG
Sbjct: 313 RGLVETMKKVGNFDSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPNAYTYNIMMDG 372

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           LC+   L  AR L   + R G+ P+ V Y+ L+ G C+ G++ E K       +   +  
Sbjct: 373 LCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKS------VLHEMIR 426

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
            G  P+ YT N L++   K GR      +  ++   C+ PD VT
Sbjct: 427 NGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVT 470



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 144/353 (40%), Gaps = 55/353 (15%)

Query: 100 LAKTKHYDTVLSLFK--RLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 157
           LA+  H D  ++ FK  R     L P    YN+L+    +  R      +   +L +   
Sbjct: 88  LAQLGHVDDAITHFKSLRAQFPSLSPSLPLYNLLLRSTLRHHRPGFVSWLYSDMLAARVA 147

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P   TF  LI  LC       A  LF K+   GC  + FT   L+ GLCR G    AL L
Sbjct: 148 PQTYTFNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCRAGLVKQALEL 207

Query: 218 F-----------------------EEMANGN-------GEFGVVCEPDAITYSTIIDGLC 247
                                   EEM N          E GV+  PD +T+++ I  LC
Sbjct: 208 VNNNNSCRIANRVVYNTLVSRFCREEMNNEAERLVERMNELGVL--PDVVTFNSRISALC 265

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           + AG         M +      M     L   +   + F  ++ G CK   +  AR L +
Sbjct: 266 R-AGKV-------MEASRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLVE 317

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           ++ + G   ++  YNI + GL  +G++ E +      L+   + + G+ P+ YTYNI+++
Sbjct: 318 TMKKVGNFDSLECYNIWLMGLLRNGELLEAR------LVLDEMVAKGIEPNAYTYNIMMD 371

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI-------KILEINSFFRQV 413
             C+   +S    +   ++ +   PD V +++L+       K+ E  S   ++
Sbjct: 372 GLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEM 424



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 123/299 (41%), Gaps = 29/299 (9%)

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
           N++   PD  TY  LIN  CK+GR+         +L     PD+VT+ + I   C + +I
Sbjct: 517 NVSNCLPDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKI 576

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
             A  +   +   GC   + TYN LI GL           L +EM     E G+   PD 
Sbjct: 577 SSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMK----EKGI--SPDI 630

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
            TY+ II  LC E G A         + S L++M        V     +F  LI    K 
Sbjct: 631 CTYNNIITCLC-EGGKAK-------DAISLLHEMLDKGISPNVS----SFKILIKAFSKS 678

Query: 297 SKLKIARELFQ-SLPRAGLMPNVVTYNILIRGLCNDGQMDETKH-YETVFLLFKRLNSTG 354
           S  K+A ELF+ +L   G    +  Y+++   L   GQ+ E K  +E     +  L +  
Sbjct: 679 SDFKVACELFEVALNICGRKEAL--YSLMFNELLAGGQLSEAKELFEVSLDRYLTLKN-- 734

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
                + Y  LI   C+  R++    +  +++   +  D  +F  +I  L      RQ 
Sbjct: 735 -----FMYKDLIARLCQDERLADANSLLYKLIDKGYGFDHASFMPVIDGLSKRGNKRQA 788



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 12/186 (6%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFK-RLNLTGLFPDRYTYNI 130
           +A+ +   ML+   S P V+SF IL    +K+  +     LF+  LN+ G       Y++
Sbjct: 648 DAISLLHEMLDKGIS-PNVSSFKILIKAFSKSSDFKVACELFEVALNICG--RKEALYSL 704

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           + N     G++S    +    L    T     +  LI  LC + R+ +A +L  KL   G
Sbjct: 705 MFNELLAGGQLSEAKELFEVSLDRYLTLKNFMYKDLIARLCQDERLADANSLLYKLIDKG 764

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST---IIDG-L 246
              D  ++  +I+GL + G+   A    +E+A    E  +   P   TYS    +I G L
Sbjct: 765 YGFDHASFMPVIDGLSKRGNKRQA----DELAKRMMELELEDRPVDRTYSNRKRVIPGKL 820

Query: 247 CKEAGS 252
            K+ GS
Sbjct: 821 LKDGGS 826



 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 1/130 (0%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++N L   L        +  L   +   G+ PD  TYN +I C C+ G+      +L 
Sbjct: 595 LQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLH 654

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +L    +P+  +F  LIK     S    A  LF ++ +  C      Y+ + N L   G
Sbjct: 655 EMLDKGISPNVSSFKILIKAFSKSSDFKVACELF-EVALNICGRKEALYSLMFNELLAGG 713

Query: 210 HTIVALNLFE 219
               A  LFE
Sbjct: 714 QLSEAKELFE 723



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 103/290 (35%), Gaps = 63/290 (21%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  L   L K    +     F  +    L PD  TY+  I  FCK G++S  F V
Sbjct: 523 PDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRV 582

Query: 148 LGRILRSC-----------------------------------FTPDAVTFTSLIKDLCA 172
           L  + R+                                     +PD  T+ ++I  LC 
Sbjct: 583 LKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCE 642

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
             +  +A +L  ++   G   +V ++  LI    ++    VA  LFE   N       +C
Sbjct: 643 GGKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSSDFKVACELFEVALN-------IC 695

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL-NFLC--L 289
                 YS               L F+ + +   L++    F +   + L L NF+   L
Sbjct: 696 GRKEALYS---------------LMFNELLAGGQLSEAKELFEVSLDRYLTLKNFMYKDL 740

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG---QMDE 336
           I  LC+  +L  A  L   L   G   +  ++  +I GL   G   Q DE
Sbjct: 741 IARLCQDERLADANSLLYKLIDKGYGFDHASFMPVIDGLSKRGNKRQADE 790


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 163/365 (44%), Gaps = 41/365 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL VF+ M   + + P ++++NIL   L +    D    L   +   GLFP+  T NI
Sbjct: 360 DEALRVFEEM--KKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNI 417

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++  CK  ++     +  ++     TPD +TF SLI  L    R+ +A  ++ K+    
Sbjct: 418 MVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSD 477

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-- 248
           C  +   Y +LI      G       ++++M N N      C PD    +T +D + K  
Sbjct: 478 CRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQN------CSPDLQLLNTYMDCMFKAG 531

Query: 249 --EAGSANFLGFSC------MASFSAL----------NKMAFYFPLVRVQCLCLN---FL 287
             E G A F             S+S L          N+    F  ++ Q   L+   + 
Sbjct: 532 EPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYN 591

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            +IDG CK  K+  A +L + +   G  P VVTY  +I GL    ++DE       ++LF
Sbjct: 592 IVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEA------YMLF 645

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS----LIKI 403
           +   S  +  ++  Y+ LI+ F K+GR+   ++I   ++    TP+  T+ S    L+K 
Sbjct: 646 EEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKA 705

Query: 404 LEINS 408
            EIN 
Sbjct: 706 EEINE 710



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 156/357 (43%), Gaps = 26/357 (7%)

Query: 65  ITSITPNEALCVFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           ++ +  N+    FD + NMR    RP  +++  L G  +   H D +L+LF+++   G  
Sbjct: 141 LSCVKANKLREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYE 200

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P  + +  LI  F K GRV     +L  +  S    D V +   I       ++  A   
Sbjct: 201 PTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKF 260

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN---------------GNGE 227
           F ++   G + D  TY ++I  LC+      A+ +FE +                 G G 
Sbjct: 261 FHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGS 320

Query: 228 FGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLN 285
            G   E  ++       G      + N +  +C+     +++    F  ++         
Sbjct: 321 AGKFDEAYSLLERQRAKGSIPSVIAYNCI-LTCLRKMGKVDEALRVFEEMKKDAAPNLST 379

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  LID LC+  KL  A EL  S+ +AGL PNV T NI++  LC   ++DE         
Sbjct: 380 YNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEA------CA 433

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +F++++     PD  T+  LI+   K+GRV   + I+ ++L S    +++ +TSLIK
Sbjct: 434 IFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIK 490



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 124/285 (43%), Gaps = 30/285 (10%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD    N  ++C  K G    G  +   I    F PDA +++ LI  L       E   L
Sbjct: 515 PDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYEL 574

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
           F  ++  GC LD   YN +I+G C+ G    A  L EEM           EP  +TY ++
Sbjct: 575 FYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKG------FEPTVVTYGSV 628

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKL 299
           IDGL K                  L++    F   + + + LN   +  LIDG  K+ ++
Sbjct: 629 IDGLAK---------------IDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRI 673

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A  + + L + GL PNV T+N L+  L    +++E        + F+ +      P+ 
Sbjct: 674 DEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEA------LVCFQSMKELKCTPNQ 727

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            TY ILIN  CK+ + +  FV +  +      P  +++T++I  L
Sbjct: 728 VTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 133/328 (40%), Gaps = 26/328 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   S++IL   L K    +    LF  +   G   D   YNI+I+ FCK G+V+  + +
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQL 609

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +    F P  VT+ S+I  L    R+ EA  LF + +    EL+V  Y++LI+G  +
Sbjct: 610 LEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGK 669

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-EAGSANFLGFSCMASFSA 266
            G    A  + EE+            P+  T+++++D L K E  +   + F  M     
Sbjct: 670 VGRIDEAYLILEELMQKG------LTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKC 723

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                 Y               LI+GLCK+ K   A   +Q + + G+ P+ ++Y  +I 
Sbjct: 724 TPNQVTYG-------------ILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMIS 770

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL   G + E         LF R  + G  PD   YN +I       R    F +F    
Sbjct: 771 GLAKAGNIAEAG------ALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETR 824

Query: 387 PSCFTPDAVTFTSLIKILEINSFFRQVA 414
                    T   L+  L  N    Q A
Sbjct: 825 RRGLHIHNKTCVVLLDTLHKNDCLEQAA 852



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 157/371 (42%), Gaps = 71/371 (19%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYT-YNILINCFCKMGRVSHGFVVLGR 150
           S+N L   +A+ +++D +  +   +++ G  P   T   ++++C  K  ++  GF V+  
Sbjct: 100 SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSC-VKANKLREGFDVVQN 158

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           + +  F P    +T+LI    A +       LF +++  G E  V  + TLI G  + G 
Sbjct: 159 MRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGR 218

Query: 211 TIVALNLFEEMANGN---------------GEFGVV--------------CEPDAITYST 241
              AL+L +EM + +               G+ G V               +PD +TY++
Sbjct: 219 VDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTS 278

Query: 242 IIDGLCKE-----------------------AGSANFLGFSCMASFSALNKMAFYFPLVR 278
           +I  LCK                        A +   +G+     F        Y  L R
Sbjct: 279 MIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEA-----YSLLER 333

Query: 279 VQCL-----CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
            +        + + C++  L K+ K+  A  +F+ + +    PN+ TYNILI  LC  G+
Sbjct: 334 QRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDA-APNLSTYNILIDMLCRAGK 392

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           +D        F L   +   GLFP++ T NI+++  CK  ++     IF ++     TPD
Sbjct: 393 LD------CAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPD 446

Query: 394 AVTFTSLIKIL 404
            +TF SLI  L
Sbjct: 447 EITFCSLIDGL 457



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 5/153 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEAL  F  M  ++ + P   ++ IL   L K + ++     ++ +   G+ P   +Y  
Sbjct: 709 NEALVCFQSMKELKCT-PNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTT 767

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+   K G ++    +  R   +   PD+  + ++I+ L   +R M+A +LF + R  G
Sbjct: 768 MISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRG 827

Query: 191 CELD----VFTYNTLINGLCRTGHTIVALNLFE 219
             +     V   +TL    C     IV   L E
Sbjct: 828 LHIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRE 860


>gi|449446855|ref|XP_004141186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Cucumis sativus]
          Length = 1079

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 168/356 (47%), Gaps = 42/356 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
            A+  F  ML +R  +P V + N++   + K      V S FK++  + + P+  ++NIL
Sbjct: 123 HAVNTFSSML-IRGFKPSVYTCNMIMASMVKNCRAHLVWSFFKQMLTSRVCPNVSSFNIL 181

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  C  G++     +L  + R+ + P  V++ +L+   C + R   A  L   +   G 
Sbjct: 182 ISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKGI 241

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA- 250
           + DV TYN  I+ LCR   +     + ++M N       +  P+ ++Y+T+I+G  KE  
Sbjct: 242 QADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNK------MITPNEVSYNTLINGFVKEGK 295

Query: 251 -GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL---------------------- 287
            G A  + F+ M   +    +  Y  L+   C+  NF                       
Sbjct: 296 IGVATRV-FNEMIELNLSPNLITYNILINGYCINGNFEEALRVLDVMEANDVRPNEVTIG 354

Query: 288 CLIDGLCKISKLKIARELFQS--LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
            L++GL K +K  +AR + +   + R  L  N +++ ++I GLC +G +DE       F 
Sbjct: 355 TLLNGLYKSAKFDVARNILERYCINRTSL--NCISHTVMIDGLCRNGLLDEA------FQ 406

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L   +   G+ PD+ T+++LIN FCK+G ++    +  +I    F P+ V F++LI
Sbjct: 407 LLIEMCKDGVHPDIITFSVLINGFCKVGNINKAKEVMSKIYREGFVPNNVIFSTLI 462



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 148/334 (44%), Gaps = 31/334 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S+N L     K   +   L L   +   G+  D  TYN+ I+  C+  R + G++V
Sbjct: 208 PTIVSYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLV 267

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++     TP+ V++ +LI     E +I  A  +F ++       ++ TYN LING C 
Sbjct: 268 LKKMRNKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCI 327

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+   AL + + M   +        P+ +T  T+++GL K             A F   
Sbjct: 328 NGNFEEALRVLDVMEAND------VRPNEVTIGTLLNGLYKS------------AKFDVA 369

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             +   + + R    C++   +IDGLC+   L  A +L   + + G+ P+++T+++LI G
Sbjct: 370 RNILERYCINRTSLNCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGVHPDIITFSVLING 429

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  G +++ K       +  ++   G  P+   ++ LI   CK+G V      +  +  
Sbjct: 430 FCKVGNINKAKE------VMSKIYREGFVPNNVIFSTLIYNSCKVGNVYEAMKFYAAMNL 483

Query: 388 SCFTPDAVTFTSLI-------KILEINSFFRQVA 414
           +    D  T  SL+       K++E   F   ++
Sbjct: 484 NGQNADNFTCNSLVASLCENGKLVEAEEFLHHIS 517



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 136/285 (47%), Gaps = 29/285 (10%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           GL P+  T++ +IN +  +G  S  F V  R++     P   T+ SL+K LC      EA
Sbjct: 520 GLVPNSVTFDCIINGYANVGDGSGAFSVFDRMISCGHHPSPFTYGSLLKVLCKGQNFWEA 579

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L  KL      +D  +YNTLI  + ++G+ + A+ LFEEM   N        PD+ TY
Sbjct: 580 RKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNN------ILPDSYTY 633

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKI 296
           + I+ GL +E           + +F  L +      L++ + L LN   + C IDGL K 
Sbjct: 634 TCILSGLIREG--------RLVCAFIFLGR------LMQKEILTLNSIVYTCFIDGLFKA 679

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            + K A  LF+ +   GL  +++  N +  G    G++           L  +  +  + 
Sbjct: 680 GQSKAALYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSASS------LISKTRNKNVI 733

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           P+L T+NIL++ + +   + S F ++  +  S F P+ +T+ SLI
Sbjct: 734 PNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLI 778



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 166/407 (40%), Gaps = 62/407 (15%)

Query: 29  EPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRP--- 85
           EP++ T    +   V  +A L  + K   K   + +  S        +F  +++  P   
Sbjct: 49  EPNHLTHILGITTHVLVKARLYGYAKSILKHLAQKNSGSNF------LFGVLMDTYPLCS 102

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           S P V  F++L     +       ++ F  + + G  P  YT N+++    K  R    +
Sbjct: 103 SNPAV--FDLLIRVYLRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNCRAHLVW 160

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
               ++L S   P+  +F  LI  LC + ++ +A  + T +   G    + +YNTL++  
Sbjct: 161 SFFKQMLTSRVCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWC 220

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G    AL L   M           + D  TY+  ID LC+ + SA   G+  +    
Sbjct: 221 CKKGRFKFALVLIHHMECKG------IQADVCTYNMFIDSLCRNSRSAQ--GYLVLKKMR 272

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             NKM        +    +++  LI+G  K  K+ +A  +F  +    L PN++TYNILI
Sbjct: 273 --NKM--------ITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILI 322

Query: 326 RGLCNDGQMDE-----------------------------TKHYETVFLLFKR--LNSTG 354
            G C +G  +E                             +  ++    + +R  +N T 
Sbjct: 323 NGYCINGNFEEALRVLDVMEANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYCINRTS 382

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L  +  ++ ++I+  C+ G +   F +   +      PD +TF+ LI
Sbjct: 383 L--NCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGVHPDIITFSVLI 427



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 146/362 (40%), Gaps = 53/362 (14%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL V D M      RP   +   L   L K+  +D   ++ +R  +     +  ++ ++
Sbjct: 333 EALRVLDVM-EANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYCINRTSLNCISHTVM 391

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  C+ G +   F +L  + +    PD +TF+ LI   C    I +A  + +K+   G 
Sbjct: 392 IDGLCRNGLLDEAFQLLIEMCKDGVHPDIITFSVLINGFCKVGNINKAKEVMSKIYREGF 451

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE----------FGVVCE-------- 233
             +   ++TLI   C+ G+   A+  +  M N NG+             +CE        
Sbjct: 452 VPNNVIFSTLIYNSCKVGNVYEAMKFYAAM-NLNGQNADNFTCNSLVASLCENGKLVEAE 510

Query: 234 ------------PDAITYSTIIDGLCKEA-GSANFLGFSCMASFSALNKMAFYFPLVRVQ 280
                       P+++T+  II+G      GS  F  F  M S         Y  L++V 
Sbjct: 511 EFLHHISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDRMISCGHHPSPFTYGSLLKV- 569

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
                       LCK      AR+L + L    L  + ++YN LI  +   G + E    
Sbjct: 570 ------------LCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVR- 616

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL-PSCFTPDAVTFTS 399
                LF+ +    + PD YTY  +++   + GR+   F+  GR++     T +++ +T 
Sbjct: 617 -----LFEEMIQNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKEILTLNSIVYTC 671

Query: 400 LI 401
            I
Sbjct: 672 FI 673



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 127/301 (42%), Gaps = 26/301 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD M++      P T +  L   L K +++     L K+L+   L  D  +YN LI
Sbjct: 544 AFSVFDRMISCGHHPSPFT-YGSLLKVLCKGQNFWEARKLLKKLHCIPLAVDTISYNTLI 602

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVFGC 191
               K G +     +   ++++   PD+ T+T ++  L  E R++ A     +L +    
Sbjct: 603 VEISKSGNLLEAVRLFEEMIQNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKEIL 662

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            L+   Y   I+GL + G +  AL LF+EM     E G+    D I  ++I DG  +   
Sbjct: 663 TLNSIVYTCFIDGLFKAGQSKAALYLFKEME----EKGL--SLDLIALNSITDGYSRMGK 716

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                 FS  +  S          L         F  L+ G  +   +    +L+  + R
Sbjct: 717 V-----FSASSLISKTRNKNVIPNLT-------TFNILLHGYSRGQDIMSCFKLYNLMRR 764

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           +G  PN +TY+ LI GLCN G +      E    + K   +     D  T+N+LI   C+
Sbjct: 765 SGFFPNRLTYHSLILGLCNHGML------ELGIKMLKMFIAESSTIDDLTFNMLIRKCCE 818

Query: 372 I 372
           I
Sbjct: 819 I 819



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 129/325 (39%), Gaps = 30/325 (9%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P +T+FNIL    ++ +   +   L+  +  +G FP+R TY+ LI   C  G +  G  +
Sbjct: 734  PNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLCNHGMLELGIKM 793

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            L   +    T D +TF  LI+  C  + + +   L   + VF   LD  T   + + L R
Sbjct: 794  LKMFIAESSTIDDLTFNMLIRKCCEINDLDKVIDLTHNMEVFRVSLDKDTQKAVTDVLVR 853

Query: 208  TGHTIVALNLF---EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
                +V+ N F    EM       G +  P +  Y T++  +C+              +F
Sbjct: 854  ---RMVSQNYFVFMHEMLKK----GFI--PTSKQYCTMMKRMCRVG--------DIQGAF 896

Query: 265  SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
               ++M      +     C     ++ GL    K++ A  + Q + R   +P   T+  L
Sbjct: 897  KLKDQMVALGISLDDAAEC----AMVRGLALCGKIEEAMWILQRMLRMKKIPTTSTFTTL 952

Query: 325  IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
            +   C      E  + + +   ++      +  D+  YN+LI+  C  G V +    +  
Sbjct: 953  MHVFCKKDNFKEAHNLKILMEHYR------VKLDIVAYNVLISACCANGDVITALDFYEE 1006

Query: 385  ILPSCFTPDAVTFTSLIKILEINSF 409
            I      P+  T+  L+  +    +
Sbjct: 1007 IKQKGLLPNMTTYRVLVSAISTKHY 1031



 Score = 42.4 bits (98), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           ++  + K  +  +    F+ +  + + PNV ++NILI  LC  G++ +  +  T+     
Sbjct: 146 IMASMVKNCRAHLVWSFFKQMLTSRVCPNVSSFNILISVLCVQGKLKKAVNILTM----- 200

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            +   G  P + +YN L++  CK GR     V+   +       D  T+   I  L  NS
Sbjct: 201 -MERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNS 259


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 143/310 (46%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAML 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  L  ES++ +A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 205 ASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 265 LAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDK- 317

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 318 -----------ITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEG 366

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 367 RSVDAEK-------MLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 419

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 420 PSVVTYNVLM 429



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 133/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP   S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 161 AQSVFD-AITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLI 219

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N   K  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 220 NGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L ++M+          +PD ITY+T+IDG CKE   
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKG------LKPDKITYTTLIDGCCKEG-- 331

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                    ++F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 332 ------DLDSAFEHRKRMI----QENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSV 381

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 382 GLNPDTGTYTMIINEFCKKGDVWKGSK------LLKEMQRDGHVPSVVTYNVLMN 430



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L+K    D    LF  + + GL P+  T+  LI+  CK GRV     
Sbjct: 209 QPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L     PD +T+ +LI  LC +  + +A  L   +   G + D  TY TLI+G C
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCC 328

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 329 KEGDLDSAFEHRKRMIQEN------IRLDDVVYTALISGLCQEGRSVD------------ 370

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V +      +  +I+  CK   +    +L + + R G +P+VVTYN+L+ 
Sbjct: 371 AEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430

Query: 327 G 327
           G
Sbjct: 431 G 431



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 113 VLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 166

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            +   GL P   +YN L+N + ++G +  GF +   +L S   PD  T++ LI  L   S
Sbjct: 167 AITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKES 226


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 148/326 (45%), Gaps = 43/326 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   L+K  H D  L   +     G   D+  Y+ ++N FC  GR+     +
Sbjct: 310 PDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEI 369

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  ++    +PD VT+T+++  LC   ++ EA  +  ++   GC+ +  +Y  L+NGLC+
Sbjct: 370 VNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQ 429

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+++ A     EM N + E      P+AITYS ++ GL +E      L  +C      L
Sbjct: 430 HGNSLEA----REMMNTSEEDWWT--PNAITYSVVMHGLRREGK----LSEACDVVREML 479

Query: 268 NKMAFYFPL---VRVQCLCL------------------------NFLCLIDGLCKISKLK 300
            K  F  P+   + ++ LCL                        NF  +I G C+   + 
Sbjct: 480 TKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNID 539

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A  L   +      P+ VT+  +I  L   G+++E   Y T+ +L K     GL P   
Sbjct: 540 TALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVY-TMKMLKK-----GLDPTPV 593

Query: 361 TYNILINCFCKIGRVSSGFVIFGRIL 386
           TY  +I+ +CK+GRV     + G++L
Sbjct: 594 TYRAVIHQYCKMGRVEELIKLLGKML 619



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 146/318 (45%), Gaps = 25/318 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           P   S+  + G L + K    V +L +++     LFPD+ TYN L++   K G       
Sbjct: 274 PDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALE 333

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L       F  D V +++++   C + R+  A  +  ++   GC  DV TY  ++NGLC
Sbjct: 334 FLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLC 393

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A  + ++M      +   C+P+ ++Y+ +++GLC+     N L    M + S 
Sbjct: 394 KVGKVEEAKKMLQQM------YKHGCKPNTVSYTALLNGLCQH---GNSLEAREMMNTSE 444

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            +   ++ P        + +  ++ GL +  KL  A ++ + +   G  P  V  N+LI+
Sbjct: 445 ED---WWTPNA------ITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIK 495

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC + +M+E K +    L      + G   +   +  +I+ FC+   + +   +   + 
Sbjct: 496 SLCLEQKMNEAKKFMEECL------NRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMY 549

Query: 387 PSCFTPDAVTFTSLIKIL 404
            +   PDAVTFT++I  L
Sbjct: 550 LNNKHPDAVTFTAIIDAL 567



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 143/329 (43%), Gaps = 31/329 (9%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+      P +   N     L      +  L   +R+ L G+ P+  TYN LI  +C + 
Sbjct: 196 MMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTYNCLIKGYCDLY 255

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL--DVFT 197
           +V H   ++  +      PD V++ +++  LC + RI E   L  K+ V   +L  D  T
Sbjct: 256 QVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKM-VKDNKLFPDQVT 314

Query: 198 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257
           YNTL++ L + GH   AL    E      E G   + D + YS I++  C +        
Sbjct: 315 YNTLVHMLSKHGHADEALEFLRETE----ERGF--QVDKVGYSAIVNSFCMQGRMDR--- 365

Query: 258 FSCMASFSALNKMAFY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                +   +N+M      P V      + +  +++GLCK+ K++ A+++ Q + + G  
Sbjct: 366 -----AKEIVNEMITKGCSPDV------VTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCK 414

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           PN V+Y  L+ GLC  G   E +       +          P+  TY+++++   + G++
Sbjct: 415 PNTVSYTALLNGLCQHGNSLEARE------MMNTSEEDWWTPNAITYSVVMHGLRREGKL 468

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           S    +   +L   F P  V    LIK L
Sbjct: 469 SEACDVVREMLTKGFFPTPVEINLLIKSL 497



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 129/301 (42%), Gaps = 26/301 (8%)

Query: 101 AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 160
            K ++   VL++ ++    G+ P+    N  I+      ++      L R+     TP+ 
Sbjct: 185 GKLRNAMQVLTMMQK---AGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNV 241

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220
           VT+  LIK  C   ++  A  L  ++   GC  D  +Y T++  LC+        NL E+
Sbjct: 242 VTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEK 301

Query: 221 MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQ 280
           M   N  F     PD +TY+T++  L K   +   L F          +  F    V   
Sbjct: 302 MVKDNKLF-----PDQVTYNTLVHMLSKHGHADEALEF-----LRETEERGFQVDKV--- 348

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
                +  +++  C   ++  A+E+   +   G  P+VVTY  ++ GLC  G+++E K  
Sbjct: 349 ----GYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEAKK- 403

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                + +++   G  P+  +Y  L+N  C+ G       +        +TP+A+T++ +
Sbjct: 404 -----MLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVV 458

Query: 401 I 401
           +
Sbjct: 459 M 459



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 112/267 (41%), Gaps = 23/267 (8%)

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
           + + G++ +   VL  + ++   P+ +   + I  L   +++ +A     ++++ G   +
Sbjct: 181 YSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPN 240

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           V TYN LI G C       A+ L  EM          C PD ++Y T++  LC++     
Sbjct: 241 VVTYNCLIKGYCDLYQVEHAMELIAEMPFKG------CPPDKVSYYTVMGFLCQDKRIKE 294

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                 M      NK+   FP        + +  L+  L K      A E  +     G 
Sbjct: 295 VRNL--MEKMVKDNKL---FPDQ------VTYNTLVHMLSKHGHADEALEFLRETEERGF 343

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
             + V Y+ ++   C  G+MD  K       +   + + G  PD+ TY  ++N  CK+G+
Sbjct: 344 QVDKVGYSAIVNSFCMQGRMDRAKE------IVNEMITKGCSPDVVTYTAVVNGLCKVGK 397

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLI 401
           V     +  ++      P+ V++T+L+
Sbjct: 398 VEEAKKMLQQMYKHGCKPNTVSYTALL 424


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 150/339 (44%), Gaps = 39/339 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL + D ML+ R  +P + ++N +   + K    D    + + L L G  PD  +YNI
Sbjct: 245 DEALKLMDEMLS-RGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNI 303

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+      G+   G  ++ ++      P+ VT++ LI  LC + +I EA  L   ++  G
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG 363

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D ++Y+ LI   CR G   VA+   E M +        C PD + Y+T++  LCK  
Sbjct: 364 LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG------CLPDIVNYNTVLATLCKNG 417

Query: 251 GSANFLGF-------SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
            +   L          C  + S+ N M               F  L     KI  L +  
Sbjct: 418 KADQALEIFGKLGEVGCSPNSSSYNTM---------------FSALWSSGDKIRALHMIL 462

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           E+  +    G+ P+ +TYN +I  LC +G +DE       F L   + S    P + TYN
Sbjct: 463 EMMSN----GIDPDEITYNSMISCLCREGMVDE------AFELLVDMRSCEFHPSVVTYN 512

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           I++  FCK  R+     +   ++ +   P+  T+T LI+
Sbjct: 513 IVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIE 551



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 149/370 (40%), Gaps = 72/370 (19%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++N L     K    D    +  R+      PD  TYNI+I   C  G++     
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL ++L     P  +T+T LI+    E  + EA  L  ++   G + D+FTYNT+I G+C
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274

Query: 207 RTG-----------------------HTIVALNLFEEMANGNGE------FGVVCEPDAI 237
           + G                       + I+   L  +     GE      F   C+P+ +
Sbjct: 275 KEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF-YFPLVRVQCLCLNFLCLIDGLCKI 296
           TYS +I  LC++      +    +     L   A+ Y P             LI   C+ 
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP-------------LIAAFCRE 381

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE----------------TKHY 340
            +L +A E  +++   G +P++V YN ++  LC +G+ D+                +  Y
Sbjct: 382 GRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSY 441

Query: 341 ETVF-------------LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            T+F              +   + S G+ PD  TYN +I+C C+ G V   F +   +  
Sbjct: 442 NTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRS 501

Query: 388 SCFTPDAVTF 397
             F P  VT+
Sbjct: 502 CEFHPSVVTY 511



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 131/301 (43%), Gaps = 27/301 (8%)

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           ++ +Y   L L + +   G  PD      LI  F  +  +     V+  IL     PD  
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVF 159

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            + +LI   C  +RI +A  +  ++R      D  TYN +I  LC  G   +AL +  ++
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-SCMASFSALNKMAFYFPLVRVQ 280
            + N      C+P  ITY+ +I+    E G    L     M S      M  Y  ++R  
Sbjct: 220 LSDN------CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIR-- 271

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
                      G+CK   +  A E+ ++L   G  P+V++YNIL+R L N G+ +E +  
Sbjct: 272 -----------GMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEK- 319

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                L  ++ S    P++ TY+ILI   C+ G++     +   +     TPDA ++  L
Sbjct: 320 -----LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPL 374

Query: 401 I 401
           I
Sbjct: 375 I 375



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 26/245 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++IL   L +    +  ++L K +   GL PD Y+Y+ LI  FC+ GR+      
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     PD V + +++  LC   +  +A  +F KL   GC  +  +YNT+ + L  
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 450

Query: 208 TGHTIVALNL-FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +G  I AL++  E M+NG        +PD ITY+++I  LC+E             +F  
Sbjct: 451 SGDKIRALHMILEMMSNG-------IDPDEITYNSMISCLCREG--------MVDEAFEL 495

Query: 267 LNKM---AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           L  M    F+  +V    + L       G CK  +++ A  + +S+   G  PN  TY +
Sbjct: 496 LVDMRSCEFHPSVVTYNIVLL-------GFCKAHRIEDAINVLESMVGNGCRPNETTYTV 548

Query: 324 LIRGL 328
           LI G+
Sbjct: 549 LIEGI 553



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 2/135 (1%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  +S+N +F  L  +      L +   +   G+ PD  TYN +I+C C+ G V   F +
Sbjct: 436 PNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFEL 495

Query: 148 LGRILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L   +RSC F P  VT+  ++   C   RI +A  +   +   GC  +  TY  LI G+ 
Sbjct: 496 LVD-MRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIG 554

Query: 207 RTGHTIVALNLFEEM 221
             G+   A+ L  ++
Sbjct: 555 FAGYRAEAMELANDL 569


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 133/293 (45%), Gaps = 30/293 (10%)

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           +FK +N  G  PD    N  ++C  K G V  G  +   I    F PD  +++ LI  L 
Sbjct: 11  IFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLT 70

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
              +  E +++F  ++  G  LD   YN +++G C++G    A    EEM   +      
Sbjct: 71  KAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKH------ 124

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC--- 288
             P   TY +IIDGL K                  L++    F   + + + LN +    
Sbjct: 125 VPPTVATYGSIIDGLAK---------------IDRLDEAYMLFEEAKSKGIELNVIVYSS 169

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LIDG  K+ ++  A  + + + + GL PNV T+N L+  L    +++E        + F+
Sbjct: 170 LIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEA------LICFQ 223

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +      P+ YTY+ILIN  C++ + +  FV +  +      P+ VT+T++I
Sbjct: 224 SMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMI 276



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 131/295 (44%), Gaps = 24/295 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++IL   L K        S+F  +   G   D   YN +++ FCK G+V   +  
Sbjct: 57  PDVRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEA 116

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P   T+ S+I  L    R+ EA  LF + +  G EL+V  Y++LI+G  +
Sbjct: 117 LEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGK 176

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  + EEM            P+  T+++++D L K A   N      +  F ++
Sbjct: 177 VGRIDEAYLILEEMMKKG------LAPNVYTWNSLMDALVK-AEEIN----EALICFQSM 225

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            +M       +       +  LI+GLC++ K   A   +Q + + GL+PNVVTY  +I G
Sbjct: 226 KEM-------KCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISG 278

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           L   G + +         LF+R  + G  PD  ++N LI       R    + +F
Sbjct: 279 LAKVGNITDA------CSLFERFKANGGIPDAASFNALIEGMSHANRAIEAYHVF 327



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 142/325 (43%), Gaps = 30/325 (9%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +N R  +P +T  N    C+ K    +   ++F+ +   G  PD  +Y+ILI+   K G+
Sbjct: 15  MNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQ 74

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +   + +  F  DA  + +++   C   ++ +A     +++V      V TY +
Sbjct: 75  ARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGS 134

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           +I+GL +      A  LFEE  +   E  V      I YS++IDG  K            
Sbjct: 135 IIDGLAKIDRLDEAYMLFEEAKSKGIELNV------IVYSSLIDGFGK------------ 176

Query: 261 MASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
                 +++       +  + L  N   +  L+D L K  ++  A   FQS+      PN
Sbjct: 177 ---VGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPN 233

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
             TY+ILI GLC        + Y   F+ ++ +   GL P++ TY  +I+   K+G ++ 
Sbjct: 234 TYTYSILINGLCR------VQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITD 287

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIK 402
              +F R   +   PDA +F +LI+
Sbjct: 288 ACSLFERFKANGGIPDAASFNALIE 312



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 119/263 (45%), Gaps = 24/263 (9%)

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           GR   G  +   + R    PD     + +  +     + +  A+F  ++ +G   DV +Y
Sbjct: 3   GRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSY 62

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           + LI+GL + G      ++F  M      F +    DA  Y+ ++DG CK +G  +    
Sbjct: 63  SILIHGLTKAGQARETSSIFHAMKQRG--FAL----DARAYNAVVDGFCK-SGKVD---- 111

Query: 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
               ++ AL +M     +  V      +  +IDGL KI +L  A  LF+     G+  NV
Sbjct: 112 ---KAYEALEEM----KVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNV 164

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           + Y+ LI G    G++DE       +L+ + +   GL P++YT+N L++   K   ++  
Sbjct: 165 IVYSSLIDGFGKVGRIDEA------YLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEA 218

Query: 379 FVIFGRILPSCFTPDAVTFTSLI 401
            + F  +     +P+  T++ LI
Sbjct: 219 LICFQSMKEMKCSPNTYTYSILI 241



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 28/240 (11%)

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
             R  +   +F ++   GC+ D+   NT ++ + + G       +FE++      +G + 
Sbjct: 2   HGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKG----YGFL- 56

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292
            PD  +YS +I GL K AG A        + F A+ +  F             +  ++DG
Sbjct: 57  -PDVRSYSILIHGLTK-AGQAR----ETSSIFHAMKQRGFALD-------ARAYNAVVDG 103

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
            CK  K+  A E  + +    + P V TY  +I GL    ++DE       ++LF+   S
Sbjct: 104 FCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEA------YMLFEEAKS 157

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS----LIKILEINS 408
            G+  ++  Y+ LI+ F K+GR+   ++I   ++     P+  T+ S    L+K  EIN 
Sbjct: 158 KGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINE 217



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 1/150 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + + M+  +   P V ++N L   L K +  +  L  F+ +      P+ YTY+I
Sbjct: 181 DEAYLILEEMMK-KGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSI 239

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  C++ + +  FV    + +    P+ VT+T++I  L     I +A +LF + +  G
Sbjct: 240 LINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANG 299

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEE 220
              D  ++N LI G+      I A ++FEE
Sbjct: 300 GIPDAASFNALIEGMSHANRAIEAYHVFEE 329



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 1/138 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEAL  F  M  M+ S P   +++IL   L + + Y+     ++ +   GL P+  TY  
Sbjct: 216 NEALICFQSMKEMKCS-PNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTT 274

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+   K+G ++    +  R   +   PDA +F +LI+ +   +R +EA  +F + R+ G
Sbjct: 275 MISGLAKVGNITDACSLFERFKANGGIPDAASFNALIEGMSHANRAIEAYHVFEETRLRG 334

Query: 191 CELDVFTYNTLINGLCRT 208
           C ++V    +L++ L + 
Sbjct: 335 CRINVKACISLLDALNKA 352


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 141/283 (49%), Gaps = 24/283 (8%)

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
            G+ PD YTY+ LI  +CK+  +     V+  +  +  + + VT+ +LI  LC    I E
Sbjct: 237 AGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEE 296

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A     ++  +G   D FTY  +INGLC+ G    A  L +EM+      G++  P+ + 
Sbjct: 297 AFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCA----GLM--PNVVV 350

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           YST+IDG  ++ G+A+        +F  + +M+       VQ   + +  LI GLCK+ +
Sbjct: 351 YSTLIDGFMRQ-GNAD-------EAFKIVKEMS----AAGVQPNKITYDNLIRGLCKLGR 398

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           +  A  + + + + G M + +TYN++I G           + E  FLL   +   G+ P+
Sbjct: 399 MGRASRILKQMTKIGYMADTMTYNLVIEGHL------RQHNKEEAFLLLNEMRKGGISPN 452

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +YTY+I+IN  C+IG       +  +++     P+A  +  LI
Sbjct: 453 VYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLI 495



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 137/315 (43%), Gaps = 30/315 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++N L G L +    +      K +   GL PD +TY  +IN  CK GR      +L 
Sbjct: 278 VVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLD 337

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +  +   P+ V +++LI     +    EA  +  ++   G + +  TY+ LI GLC+ G
Sbjct: 338 EMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLG 397

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A  + ++M     + G +   D +TY+ +I+G  ++             +F  LN+
Sbjct: 398 RMGRASRILKQMT----KIGYMA--DTMTYNLVIEGHLRQHNKEE--------AFLLLNE 443

Query: 270 MAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           M       R   +  N   +  +I+GLC+I + + A  L + +   GL PN   Y  LI 
Sbjct: 444 M-------RKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLIS 496

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C +G       +       K++    L PDLY YN LI     +G++      +  +L
Sbjct: 497 GYCREGS------FSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEML 550

Query: 387 PSCFTPDAVTFTSLI 401
              F P+  T+  LI
Sbjct: 551 EKGFQPNDFTYGGLI 565



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 132/316 (41%), Gaps = 26/316 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  +   L K    D    L   ++  GL P+   Y+ LI+ F + G     F +
Sbjct: 311 PDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKI 370

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +  +   P+ +T+ +LI+ LC   R+  A+ +  ++   G   D  TYN +I G  R
Sbjct: 371 VKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLR 430

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
             +   A  L  EM  G         P+  TYS II+GLC+   S    G         L
Sbjct: 431 QHNKEEAFLLLNEMRKGG------ISPNVYTYSIIINGLCQIGESERASGLLEQMIADGL 484

Query: 268 NKMAF-YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
              AF Y P             LI G C+     +A E  + + R  L P++  YN LI 
Sbjct: 485 KPNAFVYAP-------------LISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLII 531

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL N G+MDE   Y      +  +   G  P+ +TY  LI+ +   G +     +  ++L
Sbjct: 532 GLSNVGKMDEAIEY------YDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQML 585

Query: 387 PSCFTPDAVTFTSLIK 402
            S   P+   +  +++
Sbjct: 586 NSGLNPNDFIYAQILE 601



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 152/362 (41%), Gaps = 50/362 (13%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P++A C+ D M +     P V  ++ L     +  + D    + K ++  G+ P++ TY+
Sbjct: 329 PDQAKCLLDEM-SCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYD 387

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI   CK+GR+     +L ++ +  +  D +T+  +I+    +    EA  L  ++R  
Sbjct: 388 NLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKG 447

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCK 248
           G   +V+TY+ +INGLC+ G +  A  L E+M A+G        +P+A  Y+ +I G C+
Sbjct: 448 GISPNVYTYSIIINGLCQIGESERASGLLEQMIADG-------LKPNAFVYAPLISGYCR 500

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
           E         +C      L KM        + C    +  LI GL  + K+  A E +  
Sbjct: 501 EGS----FSLAC----ETLKKMTRENLTPDLYC----YNSLIIGLSNVGKMDEAIEYYDE 548

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKH----------------------------- 339
           +   G  PN  TY  LI G    G +++ +                              
Sbjct: 549 MLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDN 608

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
            E V    K +   GL PD   Y I+I+     G + +   +   I  +   PD++ + S
Sbjct: 609 LEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGS 668

Query: 400 LI 401
           LI
Sbjct: 669 LI 670



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 136/320 (42%), Gaps = 49/320 (15%)

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K+ + + V S  K +   GL PD   Y I+I+     G +     VL  I ++   PD++
Sbjct: 605 KSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSL 664

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            + SLI   C  + + +A  L  ++   G E  +  YN LI+G C++     A N+F   
Sbjct: 665 IYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNS- 723

Query: 222 ANGNGEFGVVCE---PDAITYSTIIDGLCK----------------EAGSANFLGFSCMA 262
                   ++C+   P+ +TY+T+IDG CK                E  + +   +S +A
Sbjct: 724 --------IICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLA 775

Query: 263 ---SFSALNKMAFYFP---LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316
              S S   + A +     + R   +  +F  L+ G CK  KL+   +    +    ++P
Sbjct: 776 AGCSNSGDLQQALFITEEMIARGYAIISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVP 835

Query: 317 NVVTYNILIRGLCNDGQMDETK------------HYETVFL--LFKRLNSTGLFPDLYTY 362
           +++T   ++ GL   G++ E              H +T  L  LF  + + GL P    +
Sbjct: 836 SLLTVENIVIGLGEAGKLSEAHTIFVELQQKNASHRDTDHLSSLFTDMINQGLVPLDVIH 895

Query: 363 NILINCFCKIGRVSSGFVIF 382
           N +I   CK G +    ++ 
Sbjct: 896 N-MIQSHCKQGYLDKALMLH 914



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/334 (20%), Positives = 140/334 (41%), Gaps = 32/334 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+  +D ML  +  +P   ++  L    +   + +    L  ++  +GL P+ + Y  
Sbjct: 540 DEAIEYYDEMLE-KGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQ 598

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++  + K   +      L  +L     PD   +  +I +L +   +  A ++ + +   G
Sbjct: 599 ILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNG 658

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D   Y +LI+G C+      A+ L +EMA    E G+ C      Y+ +IDG CK  
Sbjct: 659 LVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISC------YNALIDGFCKS- 711

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQ 307
                           ++     F  +  + L   C+ +  LIDG CK   ++ A +L+ 
Sbjct: 712 --------------DDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYN 757

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            +   G+ P+   Y++L  G  N G + +         + + + + G +  + ++N L++
Sbjct: 758 EMLTEGVAPDAFVYSVLAAGCSNSGDLQQA------LFITEEMIARG-YAIISSFNTLVH 810

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            FCK G++         ++     P  +T  +++
Sbjct: 811 GFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIV 844


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 147/360 (40%), Gaps = 51/360 (14%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +FD M     S P V ++ IL          +  + L   +   G+ P+   Y  +
Sbjct: 277 DARQLFDEM----ASAPDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSV 332

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   C  G +S    V+  +++     D   +T+++   C +  ++ A   F +++  G 
Sbjct: 333 VALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGL 392

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D  TY T+INGLCR      A  L +EM      +    + D +TY+ +IDG CK   
Sbjct: 393 ATDGVTYTTMINGLCRAVELEEAEKLLQEM------WARRLDVDEVTYTVLIDGYCKRGK 446

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
            A         +F   N M        V    + +  L DGLCK   ++ A EL   +  
Sbjct: 447 MAE--------AFQMHNAMVQRGVTPNV----VTYTALTDGLCKQGDVQAANELLHEMSN 494

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDE-----------------------------TKHYET 342
            GL  N  TYN LI GLC  G +++                             +   + 
Sbjct: 495 KGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDR 554

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
              L + +   G+ P + TYN+L+N FC  GRV  G  +   +L     P+A T+ SL+K
Sbjct: 555 AHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMK 614



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 148/319 (46%), Gaps = 24/319 (7%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++  +   L +    +    L + +    L  D  TY +LI+ +CK G+++  F +   +
Sbjct: 398 TYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAM 457

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           ++   TP+ VT+T+L   LC +  +  A  L  ++   G EL+  TYN+LINGLC+ G+ 
Sbjct: 458 VQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYL 517

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A+    +M           +PD  TY+T+ID LCK +G  +        + S L +M 
Sbjct: 518 EQAMRTMADMDTA------CLKPDVYTYTTLIDALCK-SGDLD-------RAHSLLQEML 563

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
                  ++   + +  L++G C   +++  ++L   +    + PN  TYN L++  C +
Sbjct: 564 DKG----IKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIE 619

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
             M  T        ++K + S  + P+  TYNILI   CK   +         ++   F 
Sbjct: 620 NNMKSTTE------IYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFR 673

Query: 392 PDAVTFTSLIKILEINSFF 410
             A ++++LI++L     F
Sbjct: 674 LTATSYSALIRLLNKKKKF 692



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 148/365 (40%), Gaps = 62/365 (16%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS---LFKRLNLTGLFPDRY--TYNIL 131
           FD++L   PS P +      +G     +  + VLS   L + + L    P +   +YNIL
Sbjct: 207 FDFLLLCLPSAPLLRRLR-QYGISPSPEACNAVLSRLPLDEAIELFQELPHKNVCSYNIL 265

Query: 132 INCFCKMGRVS----------------------HGFVVLGRILRSC----------FTPD 159
           +   C  GRV                       HG   LG +  +             P+
Sbjct: 266 LKALCDAGRVKDARQLFDEMASAPDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPN 325

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
           A  +TS++  LC +  I +A  +   +      LD   Y T+++G C  G  + A   F+
Sbjct: 326 ATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFD 385

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM       G+    D +TY+T+I+GLC+                    K+       R+
Sbjct: 386 EMQRK----GLAT--DGVTYTTMINGLCR------------AVELEEAEKLLQEMWARRL 427

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
               + +  LIDG CK  K+  A ++  ++ + G+ PNVVTY  L  GLC  G +     
Sbjct: 428 DVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANE 487

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
                 L   +++ GL  +  TYN LIN  CK G +         +  +C  PD  T+T+
Sbjct: 488 ------LLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTT 541

Query: 400 LIKIL 404
           LI  L
Sbjct: 542 LIDAL 546



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 3/130 (2%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           + D+ML  +   P   ++N L        +  +   ++K +    + P+  TYNILI   
Sbjct: 593 LLDWMLE-KNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGH 651

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG--CEL 193
           CK   +         +++  F   A ++++LI+ L  + + +EA  LF  +R  G   E 
Sbjct: 652 CKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFHDMRKEGLTAES 711

Query: 194 DVFTYNTLIN 203
           DV+ +   +N
Sbjct: 712 DVYDFYIDLN 721


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 140/317 (44%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +   L ++   +   + F  +   GL PD  TYN L+N +CK G      ++
Sbjct: 335 PTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLL 394

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            G + R+   P  +T+  LI   C    + EA  L  ++   GC  DV+TY  L+ G   
Sbjct: 395 FGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKG--- 451

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
             H + +L +  E  +     G+   PD   Y+T I   C E           +   S  
Sbjct: 452 -SHNVCSLAMTREFFDEMLSKGL--RPDCFAYNTRI---CAEI---------TLGDISKS 496

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            ++     L  +    + +  LIDGLCK   LK A EL   +   GL P+ +TY  LI  
Sbjct: 497 FQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHA 556

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  G + E + +      F  + S GL P   TY ++I+ +C+ G + S +  F ++L 
Sbjct: 557 HCERGFLREARKF------FNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLE 610

Query: 388 SCFTPDAVTFTSLIKIL 404
               P+ +T+  LI  L
Sbjct: 611 EGVEPNEITYNVLIHAL 627



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 142/365 (38%), Gaps = 64/365 (17%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG--LFPDRYTYNILINCFCKMG----- 139
            P + ++N L    +K    D +  L K +   G    P+  TYN++I    + G     
Sbjct: 228 EPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEA 287

Query: 140 -------RVSH------------GFVVLGRILR----------SCFTPDAVTFTSLIKDL 170
                  R+S             G +  G + +              P  VT+ ++I  L
Sbjct: 288 AELVEEMRLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGL 347

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
               +I  A A F ++R  G   DV TYN+L+NG C+ G+   AL LF ++         
Sbjct: 348 LQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAG----- 402

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLC 288
              P  +TY+ +IDG C+            +       ++     +V   CL     +  
Sbjct: 403 -LAPTVLTYNILIDGYCR------------LGDLEEARRLKE--EMVEQGCLPDVYTYTI 447

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+ G   +  L + RE F  +   GL P+   YN  I      G + ++     V +L  
Sbjct: 448 LMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIML-- 505

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
                G+  D  TYNILI+  CK G +     +  +++ +   PD +T+T LI       
Sbjct: 506 ----EGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERG 561

Query: 409 FFRQV 413
           F R+ 
Sbjct: 562 FLREA 566



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 131/310 (42%), Gaps = 31/310 (10%)

Query: 99  CLAKTKHYDTV----LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS 154
           C A+    DT     LS F+ +   G+ PD    N ++       R      V   +L+ 
Sbjct: 166 CKARDATPDTCSTLCLSAFREMASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQL 225

Query: 155 CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG--CELDVFTYNTLINGLCRTGHTI 212
              P  VT+ +L+     E R  +   L  ++   G  C  +  TYN +I GL R G+  
Sbjct: 226 GIEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLE 285

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A  L EEM        +  +  + TY+ +I GL          GF        ++ +  
Sbjct: 286 EAAELVEEMR-------LSKKASSFTYNPLITGLLAR-------GF-----VKKVDDLQL 326

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                 +    + +  +I GL +  +++ A+  F  +   GL+P+V+TYN L+ G C  G
Sbjct: 327 EMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAG 386

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
              E        LLF  L   GL P + TYNILI+ +C++G +     +   ++     P
Sbjct: 387 NQKE------ALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLP 440

Query: 393 DAVTFTSLIK 402
           D  T+T L+K
Sbjct: 441 DVYTYTILMK 450



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 6/154 (3%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++NIL   L KT +      L  ++   GL PD  TY  LI+  C+ G +         +
Sbjct: 514 TYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDM 573

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           +     P AVT+T +I   C    +  A   F K+   G E +  TYN LI+ LCR G T
Sbjct: 574 ISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRT 633

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245
            +A   F EM     E G+V  P+  TY+ +IDG
Sbjct: 634 QLAYRHFYEML----ERGLV--PNKYTYTLLIDG 661



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 116/301 (38%), Gaps = 70/301 (23%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N L     K  +    L LF  L   GL P   TYNILI+ +C++G +     +
Sbjct: 370 PDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRL 429

Query: 148 LGRILRSCFTPDAVTFTSLIKD--------------------------------LCAESR 175
              ++     PD  T+T L+K                                 +CAE  
Sbjct: 430 KEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEIT 489

Query: 176 IMEAAALFTKLRVF---GCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVV 231
           + + +  F    V    G   D  TYN LI+GLC+TG+   A  L  +M +NG       
Sbjct: 490 LGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNG------- 542

Query: 232 CEPDAITYSTIIDGLCKEA---GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN--- 285
            +PD ITY+ +I   C+      +  F  F+ M S         Y  ++   C   N   
Sbjct: 543 LQPDCITYTCLIHAHCERGFLREARKF--FNDMISDGLPPSAVTYTVIIHAYCRRGNLYS 600

Query: 286 -------------------FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                              +  LI  LC++ + ++A   F  +   GL+PN  TY +LI 
Sbjct: 601 AYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPNKYTYTLLID 660

Query: 327 G 327
           G
Sbjct: 661 G 661


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 159/340 (46%), Gaps = 44/340 (12%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV-- 147
           V +F+ L     K+ ++D  + +F+ + ++GL P+  TYN +I+  C  G V    VV  
Sbjct: 222 VFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDA-CGKGGVEFKRVVEI 280

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA-LFTKLRVFGCELDVFTYNTLINGLC 206
              +LR+   PD +T+ SL+  +C+   + EAA  LF ++   G + DVFTYNTL++ +C
Sbjct: 281 FEEMLRNGVQPDRITYNSLLA-VCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVC 339

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---------GSANFLG 257
           + G   +A  +  EM       G    P+ +TYST+ DG  K               FLG
Sbjct: 340 KGGQMDLAYEIMLEMP------GKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLG 393

Query: 258 FSC-MASFSALNKMAFYFPLVR---------------VQCLCLNFLCLIDGLCKISKLKI 301
                 S++ L  ++ Y  L R               V+   + +  L+DG  K  K   
Sbjct: 394 IGLDRVSYNTL--LSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNE 451

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
              +F+ + +  + PN++TY+ LI  + + G +     YE    +F+     GL  D+  
Sbjct: 452 VTRVFKEMKKDRVFPNLLTYSTLI-DVYSKGSL-----YEEAMEVFREFKQAGLKADVVL 505

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           Y+ LIN  CK G V S  ++   +      P+ VT+ S+I
Sbjct: 506 YSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSII 545



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 142/296 (47%), Gaps = 25/296 (8%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F+ ML     +P   ++N L    ++   ++   +LF  +   G+  D +TYN L++  
Sbjct: 280 IFEEMLR-NGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAV 338

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK G++   + ++  +      P+ VT++++        R+ +A  L+ +++  G  LD 
Sbjct: 339 CKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDR 398

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            +YNTL++   + G    AL + +EM    G  GV  + D +TY+ ++DG  K+      
Sbjct: 399 VSYNTLLSIYAKLGRFEDALKVCKEM----GSSGV--KKDVVTYNALLDGYGKQ------ 446

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                   F+ + ++       RV    L +  LID   K S  + A E+F+   +AGL 
Sbjct: 447 ------GKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLK 500

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            +VV Y+ LI  LC +G +D      +  LL   +   G+ P++ TYN +I+ F +
Sbjct: 501 ADVVLYSELINALCKNGLVD------SAVLLLDEMTKEGIRPNVVTYNSIIDAFGR 550



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 7/165 (4%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S+N L    AK   ++  L + K +  +G+  D  TYN L++ + K G+ +    V   +
Sbjct: 400 SYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEM 459

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            +    P+ +T+++LI      S   EA  +F + +  G + DV  Y+ LIN LC+ G  
Sbjct: 460 KKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLV 519

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
             A+ L +EM            P+ +TY++IID   +   +A FL
Sbjct: 520 DSAVLLLDEMTKEG------IRPNVVTYNSIIDAFGRST-TAEFL 557



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 54/122 (44%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +  V ++N L     K   ++ V  +FK +    +FP+  TY+ LI+ + K         
Sbjct: 430 KKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAME 489

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V     ++    D V ++ LI  LC    +  A  L  ++   G   +V TYN++I+   
Sbjct: 490 VFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFG 549

Query: 207 RT 208
           R+
Sbjct: 550 RS 551


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 141/314 (44%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N++ GCLA+    +   SLF+ +   GL PD  TYN LI+ + K+G ++    V
Sbjct: 249 PSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSV 308

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +  +   PD +T+ SLI   C   RI +A      ++  G + +V TY+TLI+  C+
Sbjct: 309 FEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCK 368

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  + A   F +M        V  +P+  TY+++ID  CK            +   +  
Sbjct: 369 AGMLLEANKFFVDMIR------VGLQPNEFTYTSLIDANCK------------IGDLNEA 410

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K+        V    + +  L+DGLC+  +++ A ELF +L +AG   N   Y  L  G
Sbjct: 411 FKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHG 470

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
                   + K  E    + + +N   L PDL  Y   I   C+   +     +   ++ 
Sbjct: 471 YI------KAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMD 524

Query: 388 SCFTPDAVTFTSLI 401
              T ++  +T+LI
Sbjct: 525 CGLTANSYIYTTLI 538



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 158/375 (42%), Gaps = 59/375 (15%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGD+ +     A  +F+ M   +  RP + ++N L     K       +S+F+ +   G 
Sbjct: 264 EGDLEA-----ARSLFEEM-KAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGC 317

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TYN LINCFCK  R+   F  L  + +    P+ VT+++LI   C    ++EA  
Sbjct: 318 EPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANK 377

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
            F  +   G + + FTY +LI+  C+ G    A  L  EM        +V      TY+ 
Sbjct: 378 FFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIV------TYTA 431

Query: 242 IIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           ++DGLC++     A  L  + + +   LN+                +  L  G  K   +
Sbjct: 432 LLDGLCEDGRMREAEELFGALLKAGWTLNQQI--------------YTSLFHGYIKAKMM 477

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET---------------------- 337
           + A ++ + + +  L P+++ Y   I GLC   +++++                      
Sbjct: 478 EKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTL 537

Query: 338 --------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                   K  E V LL + +   G+   + TY +LI+  CKIG V      F  +  + 
Sbjct: 538 IDAYFKVGKTTEAVNLL-QEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNG 596

Query: 390 FTPDAVTFTSLIKIL 404
             P+ + +T+LI  L
Sbjct: 597 LQPNIMIYTALIDGL 611



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 157/351 (44%), Gaps = 37/351 (10%)

Query: 76  VFDYMLNM--RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
            F+Y+  M  R  +P V +++ L     K          F  +   GL P+ +TY  LI+
Sbjct: 340 AFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLID 399

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK+G ++  F +   + ++    + VT+T+L+  LC + R+ EA  LF  L   G  L
Sbjct: 400 ANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTL 459

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE---- 249
           +   Y +L +G  +      A+++ EEM   N       +PD + Y T I GLC++    
Sbjct: 460 NQQIYTSLFHGYIKAKMMEKAMDILEEMNKKN------LKPDLLLYGTKIWGLCRQNEIE 513

Query: 250 ------------AGSAN-FLGFSCMASFSALNKMAFYFPLVR------VQCLCLNFLCLI 290
                         +AN ++  + + ++  + K      L++      ++   + +  LI
Sbjct: 514 DSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLI 573

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           DGLCKI  ++ A   F  + R GL PN++ Y  LI GLC +  ++E K+      LF  +
Sbjct: 574 DGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKN------LFNEM 627

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              G+ PD   Y  LI+   K G       +  R++      D   +TSLI
Sbjct: 628 LDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLI 678



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 145/328 (44%), Gaps = 31/328 (9%)

Query: 77  FDYMLNMRPS-RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           FD + + R   RP    F+ LF  L      +     F ++N   + P   + N L++  
Sbjct: 167 FDMLWSTRNVCRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRL 226

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            K  +          ++ +  +P   T+  +I  L  E  +  A +LF +++  G   D+
Sbjct: 227 SKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDI 286

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            TYN+LI+G  + G    A+++FEEM +        CEPD ITY+++I+  CK       
Sbjct: 287 VTYNSLIDGYGKVGMLTGAVSVFEEMKDAG------CEPDVITYNSLINCFCK------- 333

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRA 312
                   F  + +   Y   ++ + L  N   +  LID  CK   L  A + F  + R 
Sbjct: 334 --------FERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRV 385

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           GL PN  TY  LI   C  G ++E       F L   +   G+  ++ TY  L++  C+ 
Sbjct: 386 GLQPNEFTYTSLIDANCKIGDLNEA------FKLESEMQQAGVNLNIVTYTALLDGLCED 439

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           GR+     +FG +L + +T +   +TSL
Sbjct: 440 GRMREAEELFGALLKAGWTLNQQIYTSL 467



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 117/276 (42%), Gaps = 19/276 (6%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
            G I +    +A+ + + M N +  +P +  +      L +    +  +++ + +   GL
Sbjct: 469 HGYIKAKMMEKAMDILEEM-NKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGL 527

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
             + Y Y  LI+ + K+G+ +    +L  +         VT+  LI  LC    + +A  
Sbjct: 528 TANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVR 587

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
            F  +   G + ++  Y  LI+GLC+      A NLF EM +          PD + Y++
Sbjct: 588 YFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKG------ISPDKLVYTS 641

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +IDG  K              + S  N+M      + ++     +  LI G  +  ++++
Sbjct: 642 LIDGNMKHGNPGE--------ALSLRNRMV----EIGMELDLCAYTSLIWGFSRYGQVQL 689

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           A+ L   + R G++P+ V    L+R     G ++E 
Sbjct: 690 AKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEA 725



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 18/215 (8%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168
            ++L + +   G+     TY +LI+  CK+G V         + R+   P+ + +T+LI 
Sbjct: 550 AVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALID 609

Query: 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228
            LC    + EA  LF ++   G   D   Y +LI+G  + G+   AL+L   M     E 
Sbjct: 610 GLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMV----EI 665

Query: 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
           G+  E D   Y+++I G  +              + S L++M     ++  Q LC   +C
Sbjct: 666 GM--ELDLCAYTSLIWGFSRYG--------QVQLAKSLLDEM-LRKGIIPDQVLC---IC 711

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           L+    ++  +  A  L   + R GL+   +   +
Sbjct: 712 LLRKYYELGDINEALALHDDMARRGLISGTIDITV 746



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 6/116 (5%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           F  L + L  +  L+ AR+ F  + +  ++P V + N L+       ++ ++        
Sbjct: 184 FDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLH------RLSKSSKGGLALS 237

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            FK +   GL P ++TYN++I C  + G + +   +F  +      PD VT+ SLI
Sbjct: 238 FFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLI 293



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 3/187 (1%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A+  FD+M      +P +  +  L   L K    +   +LF  +   G+ PD+  Y  
Sbjct: 583 QQAVRYFDHM-TRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTS 641

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+   K G       +  R++      D   +TSLI       ++  A +L  ++   G
Sbjct: 642 LIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKG 701

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV--VCEPDAITYSTIIDGLCK 248
              D      L+      G    AL L ++MA      G   +  P  +T  T +  LC 
Sbjct: 702 IIPDQVLCICLLRKYYELGDINEALALHDDMARRGLISGTIDITVPSCLTAVTKLHKLCA 761

Query: 249 EAGSANF 255
                +F
Sbjct: 762 SQSGTDF 768


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 170/433 (39%), Gaps = 96/433 (22%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL-FPDRYTYN 129
           ++A+ +F Y +  R  +P   ++N +   L     Y+ V  L+  ++  G  FPD  TY+
Sbjct: 172 SKAVAIF-YQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYS 230

Query: 130 ILINCFCKMGRVS----------------------------------HGFVVLGRILRSC 155
            LI+ FCK+GR                                    HG + L   +R  
Sbjct: 231 ALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQ 290

Query: 156 F-TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA 214
           +  PD  T+T LI+ L    R+ EA   F ++R  GC  D    N +IN L + G    A
Sbjct: 291 YCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDA 350

Query: 215 LNLFEEM--------------------------ANGNGEF----GVVCEPDAITYSTIID 244
           + LFEEM                          +  +  F    G    P   TYS +ID
Sbjct: 351 IKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILID 410

Query: 245 GLCKEAGSANFL---------GFS-CMASF----SALNKMAFY------FPLVRVQCLCL 284
           G CK   +   +         GF  C A++     AL K   Y      F  ++  C   
Sbjct: 411 GFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSS 470

Query: 285 N---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
           +   +  +I  L K  +L  A +LF  + R G  PNV  YN L+ GL   G +DE     
Sbjct: 471 SARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEA---- 526

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                 +R+   G  PD+ +YNI++N   K G       +   +  S   PDAV++ +++
Sbjct: 527 --LTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVL 584

Query: 402 KILEINSFFRQVA 414
             L     F + A
Sbjct: 585 GALSHAGMFEEAA 597



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 133/303 (43%), Gaps = 40/303 (13%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRS---CFTPDAVTFTSLIKDLCAESRIMEAA 180
           D  TY  LI C   + +    + ++  ++R+     TP  +  + +I+ L     I +A 
Sbjct: 118 DTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTP--MELSDIIRMLGNAKMISKAV 175

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
           A+F +++   C+     YN++I  L   G       L+ EM+N  G+    C PD +TYS
Sbjct: 176 AIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSN-EGQ----CFPDTVTYS 230

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMA--FYFPLVRVQCLCLNFLCLIDGLCKISK 298
            +I   CK       LG    A +  LN+M      P  ++      +  L+  L K+  
Sbjct: 231 ALISAFCK-------LGRQDSAIW-LLNEMKDNGMQPTAKI------YTMLMALLFKLDN 276

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           +  A  LF+ +      P+V TY  LIRGL   G++DE  ++      F  +   G  PD
Sbjct: 277 VHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNF------FHEMRREGCRPD 330

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL--------EINSFF 410
               N +IN   K GR+     +F  +      P  VT+ ++IK L        EI+S+F
Sbjct: 331 TVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWF 390

Query: 411 RQV 413
            ++
Sbjct: 391 ERM 393



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 129/340 (37%), Gaps = 96/340 (28%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-HYDTVLSLFKRLNLTGLFPDRYTYN 129
           ++A+ +F+ M  +R   P V ++N +   L ++K     + S F+R+  +G+ P  +TY+
Sbjct: 348 DDAIKLFEEMETLR-CIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYS 406

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTP------------------------------- 158
           ILI+ FCK  R     ++L  +    F P                               
Sbjct: 407 ILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKEN 466

Query: 159 ----DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA 214
                A  +  +IK L    R+ +A  LF ++   GC  +V+ YN L++GL R G    A
Sbjct: 467 CGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEA 526

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
           L     M +        C PD  +Y+ I++ L K  G    +G  C              
Sbjct: 527 LTTMRRMQDHG------CIPDINSYNIILNALAKTGGPDRAMGMLC-------------- 566

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
                                            ++ ++ + P+ V+YN ++  L + G  
Sbjct: 567 ---------------------------------NMKQSAIKPDAVSYNTVLGALSHAGMF 593

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
           +E         L K +N+ G   DL TY+ ++    K+ +
Sbjct: 594 EEAAK------LMKEMNAIGFDYDLITYSSILEAIGKVDQ 627



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 9/168 (5%)

Query: 51  QFLKERCKSSGEGDITSITP--------NEALCVFDYMLNMRPSRPPVTSFNILFGCLAK 102
           Q LKE C SS       +          ++A+ +FD M N     P V ++N L   LA+
Sbjct: 461 QELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEM-NRLGCTPNVYAYNALMSGLAR 519

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
               D  L+  +R+   G  PD  +YNI++N   K G       +L  + +S   PDAV+
Sbjct: 520 AGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVS 579

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           + +++  L       EAA L  ++   G + D+ TY++++  + +   
Sbjct: 580 YNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAIGKVDQ 627


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 156/340 (45%), Gaps = 32/340 (9%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           + S + ++AL    +M++     P   +FN L   L ++ ++D    +F  L  + +  +
Sbjct: 100 VHSHSTDQALTFLHHMIH-EGHAPLSNTFNNLLCLLIRSNYFDKAWWIFNVLK-SKVVLN 157

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            Y++ I+I   C+ G     F +L  +     +P+ V +T+LI   C    +M A  LF 
Sbjct: 158 AYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFC 217

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           K+   G   +  TY+ L+NG  + G       ++E M       G+V  P+A  Y+ +I 
Sbjct: 218 KMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRS----GIV--PNAYAYNCLIS 271

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR---VQCLCLNFLCLIDGLCKISKLKI 301
             C +                 ++K    F  +R   + C  + +  LI GLC+  K   
Sbjct: 272 EYCNDG---------------MVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGE 316

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A +L   + + GL PN+VTYNILI G C+ G+MD      T   LF +L S+GL P L T
Sbjct: 317 AVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMD------TAVRLFNQLKSSGLSPTLVT 370

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           YN LI  + K+  ++    +   +   C     VT+T LI
Sbjct: 371 YNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILI 410



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 157/326 (48%), Gaps = 37/326 (11%)

Query: 104 KHYDTVLS--LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K+ D +L+  LF +++  GL P+++TY++L+N F K G    GF +   + RS   P+A 
Sbjct: 205 KNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAY 264

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            +  LI + C +  + +A  +F ++R  G    V TYN LI GLCR      A+ L  ++
Sbjct: 265 AYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKV 324

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLC---------------KEAG-SANFLGFSCM-ASF 264
                   V   P+ +TY+ +I+G C               K +G S   + ++ + A +
Sbjct: 325 NK------VGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGY 378

Query: 265 SALNKMAFYFPLVR---VQCLC---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
           S +  +A    LV+    +C+    + +  LID   +++    A E+   + ++GL+P+V
Sbjct: 379 SKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDV 438

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
            TY++LI G C +G M E          FK L    L P+   YN +I+ +CK G     
Sbjct: 439 YTYSVLIHGXCVNGNMKEASK------PFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRA 492

Query: 379 FVIFGRILPSCFTPDAVTFTSLIKIL 404
             +   ++ S   P+  +F S + +L
Sbjct: 493 LRLLNEMVHSGMVPNVASFCSTMGLL 518



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 122/281 (43%), Gaps = 34/281 (12%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++NIL G L + K +   + L  ++N  GL P+  TYNILIN FC +G++     +  
Sbjct: 298 VMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFN 357

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           ++  S  +P  VT+ +LI        +  A  L  ++          TY  LI+   R  
Sbjct: 358 QLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLN 417

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-----KEAGSANFLGFSCMASF 264
           +T  A  +   M       G+V  PD  TYS +I G C     KEA             F
Sbjct: 418 YTDKACEMHSLMEKS----GLV--PDVYTYSVLIHGXCVNGNMKEASKP----------F 461

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            +L +M        +Q   + +  +I G CK      A  L   +  +G++PNV ++   
Sbjct: 462 KSLGEM-------HLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCST 514

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           +  LC D +  E +      LL  ++ ++GL P +  Y ++
Sbjct: 515 MGLLCRDEKWKEAE------LLLGQMINSGLKPSVSLYKMV 549



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 43/200 (21%), Positives = 80/200 (40%), Gaps = 10/200 (5%)

Query: 9   GRMRFADRL-SRKPTSSISENEPSYPTTTATLRLTVKDRASLE--QFLKERCKSSGEGDI 65
           G+M  A RL ++  +S +S    +Y T  A          +L+  + ++ERC +  +   
Sbjct: 347 GKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTY 406

Query: 66  T-------SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL 118
           T        +   +  C    ++      P V ++++L        +       FK L  
Sbjct: 407 TILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGE 466

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
             L P+   YN +I+ +CK G       +L  ++ S   P+  +F S +  LC + +  E
Sbjct: 467 MHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKE 526

Query: 179 AAALFTKLRVFGCELDVFTY 198
           A  L  ++   G +  V  Y
Sbjct: 527 AELLLGQMINSGLKPSVSLY 546


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 159/340 (46%), Gaps = 44/340 (12%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV-- 147
           V +F+ L     K+ ++D  + +F+ + ++GL P+  TYN +I+  C  G V    VV  
Sbjct: 222 VFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDA-CGKGGVEFKRVVEI 280

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA-LFTKLRVFGCELDVFTYNTLINGLC 206
              +LR+   PD +T+ SL+  +C+   + EAA  LF ++   G + DVFTYNTL++ +C
Sbjct: 281 FEEMLRNGVQPDRITYNSLLA-VCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVC 339

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA---------GSANFLG 257
           + G   +A  +  EM       G    P+ +TYST+ DG  K               FLG
Sbjct: 340 KGGQMDLAYEIMLEMP------GKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLG 393

Query: 258 FSC-MASFSALNKMAFYFPLVR---------------VQCLCLNFLCLIDGLCKISKLKI 301
                 S++ L  ++ Y  L R               V+   + +  L+DG  K  K   
Sbjct: 394 IGLDRVSYNTL--LSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNE 451

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
              +F+ + +  + PN++TY+ LI  + + G +     YE    +F+     GL  D+  
Sbjct: 452 VTRVFKEMKKDRVFPNLLTYSTLI-DVYSKGSL-----YEEAMEVFREFKQAGLKADVVL 505

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           Y+ LIN  CK G V S  ++   +      P+ VT+ S+I
Sbjct: 506 YSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSII 545



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 142/296 (47%), Gaps = 25/296 (8%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +F+ ML     +P   ++N L    ++   ++   +LF  +   G+  D +TYN L++  
Sbjct: 280 IFEEMLR-NGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAV 338

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK G++   + ++  +      P+ VT++++        R+ +A  L+ +++  G  LD 
Sbjct: 339 CKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDR 398

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
            +YNTL++   + G    AL + +EM    G  GV  + D +TY+ ++DG  K+      
Sbjct: 399 VSYNTLLSIYAKLGRFEDALKVCKEM----GSSGV--KKDVVTYNALLDGYGKQ------ 446

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
                   F+ + ++       RV    L +  LID   K S  + A E+F+   +AGL 
Sbjct: 447 ------GKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLK 500

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            +VV Y+ LI  LC +G +D      +  LL   +   G+ P++ TYN +I+ F +
Sbjct: 501 ADVVLYSELINALCKNGLVD------SAVLLLDEMTKEGIRPNVVTYNSIIDAFGR 550



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 7/165 (4%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S+N L    AK   ++  L + K +  +G+  D  TYN L++ + K G+ +    V   +
Sbjct: 400 SYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEM 459

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            +    P+ +T+++LI      S   EA  +F + +  G + DV  Y+ LIN LC+ G  
Sbjct: 460 KKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLV 519

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
             A+ L +EM            P+ +TY++IID   +   +A FL
Sbjct: 520 DSAVLLLDEMTKEG------IRPNVVTYNSIIDAFGRST-TAEFL 557



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 54/122 (44%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +  V ++N L     K   ++ V  +FK +    +FP+  TY+ LI+ + K         
Sbjct: 430 KKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAME 489

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V     ++    D V ++ LI  LC    +  A  L  ++   G   +V TYN++I+   
Sbjct: 490 VFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFG 549

Query: 207 RT 208
           R+
Sbjct: 550 RS 551


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 165/356 (46%), Gaps = 40/356 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +FD M  +    P   +++IL     +    DT LS    +   GL P  Y YN 
Sbjct: 384 DEAELLFDRMGKIGLC-PNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNS 442

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  CK G +S    ++  ++     P  VT+TSL+   C++ +I +A  L+ ++   G
Sbjct: 443 LINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKG 502

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
               ++T+ TL++GL R G    A+ LF EMA  N       +P+ +TY+ +I+G C+E 
Sbjct: 503 IVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWN------VKPNRVTYNVMIEGYCEEG 556

Query: 251 G-SANFLGFSCMASFSALNKMAFYFPLVRVQCLC-------------------LNFLC-- 288
             S  F   + M     +     Y PL+   CL                    LN +C  
Sbjct: 557 NMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYT 616

Query: 289 -LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE-TVFL- 345
            L+ G C+  KL+ A  + Q +   G+  ++V Y +LI     DG +   KH +  VFL 
Sbjct: 617 GLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLI-----DGSL---KHKDRKVFLG 668

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L K ++  GL PD   Y  +I+   K G     F I+  ++     P+ VT+T++I
Sbjct: 669 LLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVI 724



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 142/330 (43%), Gaps = 24/330 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           + + VF  M+      P V + + L   L K +H+   + LF  +   G+ PD Y Y  +
Sbjct: 174 DGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGV 233

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I   C++  +S    ++ ++  +    + V +  LI  LC + ++ EA  +   L     
Sbjct: 234 IRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKEL 293

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + DV TY TL+ GLC+     V L + +EM        +   P     S++++GL K   
Sbjct: 294 KPDVVTYCTLVCGLCKVQEFEVGLEMIDEM------LRLRFSPSEAAVSSLVEGLRKRGK 347

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
               L      +   ++   F +              LID LCK      A  LF  + +
Sbjct: 348 VEEALNLVKRVAEFGVSPNIFVYN------------ALIDSLCKGRNFDEAELLFDRMGK 395

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            GL PN VTY+ILI   C  G++D      T       +   GL P +Y YN LIN  CK
Sbjct: 396 IGLCPNDVTYSILIDMFCRRGKLD------TALSFLGEMIDMGLKPSVYPYNSLINGHCK 449

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            G +S+   +   ++     P  VT+TSL+
Sbjct: 450 FGDISAAESLMAEMINKKLEPTVVTYTSLM 479



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 152/361 (42%), Gaps = 44/361 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+AL ++  M   +   P + +F  L   L +       + LF  +    + P+R TYN+
Sbjct: 489 NKALRLYHEMTG-KGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNV 547

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I  +C+ G +S  F  L  ++     PD  ++  LI  LC   +  EA      L    
Sbjct: 548 MIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGN 607

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           CEL+   Y  L++G CR G    AL++ ++M     +  +VC      Y  +IDG  K  
Sbjct: 608 CELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVC------YGVLIDGSLKHK 661

Query: 251 GSANFLG----------------FSCMASFSALN---KMAFYFPLVRVQCLCL----NFL 287
               FLG                ++ M    +     K AF    + +   C+     + 
Sbjct: 662 DRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYT 721

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY----NILIRGLCNDGQMDETKHYETV 343
            +I+GLCK   +  A  L   +     +PN VTY    +IL +G+   G M +       
Sbjct: 722 AVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGV---GDMKKAVELHNA 778

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
            L        GL  +  TYN+LI  FC+ GR+     +  R++    +PD +T+T++I  
Sbjct: 779 IL-------KGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISE 831

Query: 404 L 404
           L
Sbjct: 832 L 832



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 116/332 (34%), Gaps = 95/332 (28%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL V   M  +R     +  + +L     K K     L L K ++  GL PD   Y  
Sbjct: 629 EEALSVCQDM-GLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTS 687

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR--- 187
           +I+   K G     F +   ++     P+ VT+T++I  LC    + EA  L +K+R   
Sbjct: 688 MIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGN 747

Query: 188 ------VFGCELDVFT--------------------------YNTLINGLCRTGHTIVAL 215
                  +GC LD+ T                          YN LI G CR G    A 
Sbjct: 748 SVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEAS 807

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            L   M  G+G       PD ITY+T+I  LC+                           
Sbjct: 808 ELITRMI-GDG-----VSPDCITYTTMISELCRR-------------------------- 835

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                                + +K A EL+ S+   G+ P+ V YN LI G C  G+M 
Sbjct: 836 ---------------------NDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMG 874

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           +        L        GL P+  T    I+
Sbjct: 875 KATELRNEML------RQGLKPNTETSETTIS 900



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 95/244 (38%), Gaps = 62/244 (25%)

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCEL--DVFTYNTLINGLCRTGHTIVALNLFEE 220
           F  LI+      R+++   +F K+ +    L  +V T + L++GL +  H  +A+ LF++
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVF-KMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDD 217

Query: 221 MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQ 280
           M N      V   PD   Y+ +I  L                                  
Sbjct: 218 MIN------VGIRPDVYIYTGVIRSL---------------------------------- 237

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
                        C++  L  A+E+   +   G   N+V YN+LI GLC      + K +
Sbjct: 238 -------------CELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCK-----KQKVW 279

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           E V +  K L    L PD+ TY  L+   CK+     G  +   +L   F+P     +SL
Sbjct: 280 EAVGIK-KDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSL 338

Query: 401 IKIL 404
           ++ L
Sbjct: 339 VEGL 342


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 147/305 (48%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + + G +  GF +   + 
Sbjct: 139 FNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMH 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ EA  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             + + +N+M+ 
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKG--------DLKQARNLINEMS- 303

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L+ A E  + +    +  + V Y  LI GLC +G
Sbjct: 304 ---MKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V +G  +   +      
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHV 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 141/315 (44%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R P  +   +   L K K++  V   +K +   G     Y +NIL++ FCK G +     
Sbjct: 98  RVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQS 157

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   I +    P  V+F +L+     +  + +   L + +   G + DV+TY+ LINGLC
Sbjct: 158 VFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLC 217

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      A  LF EM +     G+V  P+ +T++T+IDG CK  G  +      M  +  
Sbjct: 218 KESKMDEANELFXEMLDK----GLV--PNGVTFTTLIDGHCKN-GKVDL----AMEIYKQ 266

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +   +    L+        +  LI GLCK   LK AR L   +   GL P+ +TY  LI 
Sbjct: 267 MLSQSLSPDLI-------TYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLID 319

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C DG +      ET F   KR+    +  D   Y  LI+  C+ GR      +   +L
Sbjct: 320 GSCKDGDL------ETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREML 373

Query: 387 PSCFTPDAVTFTSLI 401
                PD+ T+T +I
Sbjct: 374 SVGLKPDSGTYTMII 388



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 123/275 (44%), Gaps = 24/275 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V SFN L     +    D    L   ++ +G+ PD YTY++LIN  CK  ++     
Sbjct: 168 RPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANE 227

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L     P+ VTFT+LI   C   ++  A  ++ ++       D+ TYNTLI GLC
Sbjct: 228 LFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLC 287

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A NL  EM+          +PD ITY+T+IDG CK+             +F  
Sbjct: 288 KKGDLKQARNLINEMSMKG------LKPDKITYTTLIDGSCKDG--------DLETAFEY 333

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +M        ++   + +  LI GLC+  +   A ++ + +   GL P+  TY ++I 
Sbjct: 334 RKRMI----EENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIIN 389

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
             C  G +       T   L K +   G  P + T
Sbjct: 390 EFCKKGDV------WTGSKLLKEMQRDGHVPSVVT 418



 Score = 42.4 bits (98), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/110 (21%), Positives = 47/110 (42%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++M+  +P   ++  L     K    +T     KR+    +  D   Y  LI+  C+ GR
Sbjct: 302 MSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGR 361

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
                 +L  +L     PD+ T+T +I + C +  +   + L  +++  G
Sbjct: 362 SVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 154/359 (42%), Gaps = 48/359 (13%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +F  M   +  +P V ++ +L   L +  ++D    +   +   GL P   TYN L
Sbjct: 327 EALNMFKEMTE-KHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNAL 385

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ +CK G  +    +L  +  +  +P+A T+  LI   C    I +A +L  K+     
Sbjct: 386 IDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKL 445

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + +V TYN LI+G C+ G    A  L   M     E G+V  PD  TYS  ID LCK   
Sbjct: 446 QPNVVTYNILIHGQCKEGDLGSAYKLLSLM----NESGLV--PDEWTYSVFIDTLCKRG- 498

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
               L     + F +L +         ++   + +  LIDG CK+ K+   R L   +  
Sbjct: 499 ----LVEEARSLFESLKEKG-------IKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLS 547

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETK-----------------------------HYET 342
           AG +PN +TYN LI G C +    E +                              ++ 
Sbjct: 548 AGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQ 607

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              +F ++ STG  PD++ Y   I+ +C  GR+    V+  ++      PD + +T  I
Sbjct: 608 AHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFI 666



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 142/317 (44%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L     + K+    +SL  ++    L P+  TYNILI+  CK G +   + +
Sbjct: 412 PNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKL 471

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +  S   PD  T++  I  LC    + EA +LF  L+  G + +   Y+TLI+G C+
Sbjct: 472 LSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCK 531

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G       L ++M +        C P++ITY+++IDG CKE             +F   
Sbjct: 532 VGKVSDGRFLLDKMLSAG------CVPNSITYNSLIDGYCKE------------KNFKEA 573

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             +        ++     +  LID L K  +   A ++F  +   G  P+V  Y   I  
Sbjct: 574 RLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHA 633

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C+ G++ + +      +L  ++N+ G+ PD   Y + I+ + + G +   F I  R+  
Sbjct: 634 YCSHGRLKDAE------VLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHE 687

Query: 388 SCFTPDAVTFTSLIKIL 404
               P   T++ LIK L
Sbjct: 688 VGCEPSYYTYSCLIKHL 704



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 161/374 (43%), Gaps = 52/374 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + A  +F  M N    R  V+  N++ G   + +  D  L LF +++    +P   TY +
Sbjct: 256 DAANAIFLSMPNKGCLRNEVSYTNLIHG-FCEARRVDEALKLFSQMHEDNCWPTVRTYTV 314

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I   C++GR +    +   +      P+  T+T LI  LC +S   +A  +   +   G
Sbjct: 315 IIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKG 374

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
               V TYN LI+G C+ G +  AL +   M + N      C P+A TY+ +I G C+  
Sbjct: 375 LIPSVVTYNALIDGYCKKGLSASALEILSLMESNN------CSPNARTYNELILGFCR-- 426

Query: 251 GSANFLGFSCMASFSALNKM---------AFYFPLVRVQC-----------LCL------ 284
                 G +   + S L+KM           Y  L+  QC           L L      
Sbjct: 427 ------GKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGL 480

Query: 285 -----NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                 +   ID LCK   ++ AR LF+SL   G+  N V Y+ LI G C  G++ + + 
Sbjct: 481 VPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGR- 539

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
               FLL K L S G  P+  TYN LI+ +CK        ++   ++     P A T+T 
Sbjct: 540 ----FLLDKML-SAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTI 594

Query: 400 LIKILEINSFFRQV 413
           LI  L  +  F Q 
Sbjct: 595 LIDNLLKDDEFDQA 608



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 154/376 (40%), Gaps = 88/376 (23%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N+L   L++    D + S++  +    + P+ +T N ++N +CK+G V    + + +I+
Sbjct: 172 YNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIV 231

Query: 153 RSCFTPDAVTFTS-----------------------------------LIKDLCAESRIM 177
           ++  + D  T+TS                                   LI   C   R+ 
Sbjct: 232 QAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVD 291

Query: 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA--------------- 222
           EA  LF+++    C   V TY  +I  LC+ G    ALN+F+EM                
Sbjct: 292 EALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLI 351

Query: 223 ----------------NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFS 265
                           NG  E G++  P  +TY+ +IDG CK+  SA+ L   S M S +
Sbjct: 352 CSLCEDSNFDDAKKILNGMLEKGLI--PSVVTYNALIDGYCKKGLSASALEILSLMESNN 409

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                  Y  L+              G C+   +  A  L   +    L PNVVTYNILI
Sbjct: 410 CSPNARTYNELIL-------------GFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILI 456

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C +G +       + + L   +N +GL PD +TY++ I+  CK G V     +F  +
Sbjct: 457 HGQCKEGDLG------SAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESL 510

Query: 386 LPSCFTPDAVTFTSLI 401
                  + V +++LI
Sbjct: 511 KEKGIKANEVIYSTLI 526



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 80/206 (38%), Gaps = 36/206 (17%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  + D M+  R   P   ++ IL   L K   +D    +F ++  TG  PD + Y   
Sbjct: 572 EARLLVDIMIK-RDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAF 630

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ +C  GR+    V++ ++      PD + +T  I        I  A  +  ++   GC
Sbjct: 631 IHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGC 690

Query: 192 ELDVFTYNTLINGLCRTGHTIV-----------------------------ALNLFEEMA 222
           E   +TY+ LI  L       V                              L+LF +MA
Sbjct: 691 EPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMA 750

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCK 248
               E G  C P+A TY   I GLCK
Sbjct: 751 ----EHG--CAPNANTYGKFITGLCK 770



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 125/336 (37%), Gaps = 56/336 (16%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD ML+   S P V  +                  L  ++N  G+ PD   Y +
Sbjct: 606 DQAHDMFDQMLST-GSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTL 664

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA--------- 181
            I+ + + G +   F +L R+      P   T++ LIK L + ++  E ++         
Sbjct: 665 FIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHL-SNAKPKEVSSSSELSDLSS 723

Query: 182 ---------------------LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220
                                LF K+   GC  +  TY   I GLC+ G   VA  LF+ 
Sbjct: 724 GVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDH 783

Query: 221 MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQ 280
           M    G+      P+   Y++++   C+       LG    A    L+ M     L  + 
Sbjct: 784 MKE-KGQ-----SPNEDIYNSLLGCSCQ-------LGLYGEA-IRWLDIMIENRHLPHLD 829

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
             C   LC   GL      + A+ +F S  +     + + + +LI GL   G  D+    
Sbjct: 830 S-CKLLLC---GLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKGLSDKCSD- 884

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
                LF  + + G      TY++LI  F  I  + 
Sbjct: 885 -----LFGIMETQGCQIHPKTYSMLIEGFDGIQEID 915


>gi|302763305|ref|XP_002965074.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
 gi|300167307|gb|EFJ33912.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
          Length = 484

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 143/315 (45%), Gaps = 23/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++N +   L K    D  + LF RL    + PD +TY+ L++  C+  R+     
Sbjct: 145 KPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIK 204

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   +L + +  DA  + ++    C E R+ EA  +   +    C+  V TYN +ING+C
Sbjct: 205 VYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRRCKPSVVTYNCIINGVC 264

Query: 207 RTGHTI-VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           +  + I  A  LF++M       G  C P+A+TY T+I GL     S  +    C+  F 
Sbjct: 265 QYKNRIEEAYRLFQQMV------GSDCPPNAVTYGTMILGL-----SKIYEVQRCLELFK 313

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            ++K         +      +  LI    K+ KL  A+ + Q   R  + P+V  Y  LI
Sbjct: 314 GMSKAG-------LSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLI 366

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C           +   LLF+ +    ++P++ TYNI++   CK GR    + IF  +
Sbjct: 367 SGYCR----ARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEM 422

Query: 386 LPSCFTPDAVTFTSL 400
                +P+ +TF  +
Sbjct: 423 FKVKCSPNRMTFKVM 437



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 162/372 (43%), Gaps = 53/372 (14%)

Query: 63  GDITSITPNEALC--VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG 120
           G +    P+ AL    FD+       R  V  +  L   L + +     +  FKR     
Sbjct: 15  GSVIRRVPSLALARKFFDWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAH 74

Query: 121 LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180
             P  Y++ I+I CFC +      +  LG +      PD   +  ++K  C   R+  A 
Sbjct: 75  CRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRAL 134

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
             F K+    C+ +V TYNT+INGLC+ G    A++LF  + +       + +PD  TYS
Sbjct: 135 IKFGKMGK-TCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHD------LVDPDGFTYS 187

Query: 241 TIIDGLCK----EAG--------SANFLGFSCMASFSALNKMAFYFPLVR---------- 278
           T++ GLC+    EA          AN+ G +      A N MA  F   R          
Sbjct: 188 TLVHGLCQAERLEAAIKVYDMMLEANYDGDA-----GAYNAMADGFCKERRVDEALEVLK 242

Query: 279 --VQCLC----LNFLCLIDGLCKI-SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
             +Q  C    + + C+I+G+C+  ++++ A  LFQ +  +   PN VTY  +I GL   
Sbjct: 243 TMIQRRCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGL--- 299

Query: 332 GQMDETKHYETV--FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                +K YE      LFK ++  GL PD Y Y+ LI  F K+ ++     I      + 
Sbjct: 300 -----SKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNH 354

Query: 390 FTPDAVTFTSLI 401
             PD   +T+LI
Sbjct: 355 VGPDVYMYTTLI 366



 Score = 44.7 bits (104), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 2/136 (1%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG--RVSHGF 145
           P   +++ L     K +  D   S+ +      + PD Y Y  LI+ +C+    RV    
Sbjct: 322 PDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEAL 381

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           ++   +      P+ +T+  +++ LC   R  EA  +F ++    C  +  T+  +  G+
Sbjct: 382 LLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGM 441

Query: 206 CRTGHTIVALNLFEEM 221
                T     +F +M
Sbjct: 442 IHCRKTDKFERIFMDM 457


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 160/368 (43%), Gaps = 46/368 (12%)

Query: 49  LEQFLKERCKSSG-------EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA 101
           L+Q L + C+ +        E  +     +EAL + D ML+ R  +P + ++N +   + 
Sbjct: 212 LDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLS-RGLKPDMFTYNTIIRGMC 270

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K    D    + + L L G  PD  +YNIL+      G+   G  ++ ++      P+ V
Sbjct: 271 KEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 330

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           T++ LI  LC + +I EA  L   ++  G   D ++Y+ LI   CR G   VA+   E M
Sbjct: 331 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 390

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-------SCMASFSALNKMAFYF 274
            +        C PD + Y+T++  LCK   +   L          C  + S+ N M    
Sbjct: 391 ISDG------CLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTM---- 440

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
                      F  L     KI  L +  E+  +    G+ P+ +TYN +I  LC +G +
Sbjct: 441 -----------FSALWSSGDKIRALHMILEMVSN----GIDPDEITYNSMISCLCREGMV 485

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           D+       F L   + S    P + TYNI++  FCK  R+     +   ++ +   P+ 
Sbjct: 486 DK------AFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNE 539

Query: 395 VTFTSLIK 402
            T+T LI+
Sbjct: 540 TTYTVLIE 547



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 137/318 (43%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++N L     K    D    +  R+      PD  TYNI+I   C  G++     
Sbjct: 151 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 210

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL ++L     P  +T+T LI+    E  + EA  L  ++   G + D+FTYNT+I G+C
Sbjct: 211 VLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMC 270

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A  +   +          CEPD I+Y+ ++  L  +              +  
Sbjct: 271 KEGMVDRAFEMIRNLELKG------CEPDVISYNILLRALLNQ------------GKWEE 312

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             K+       +     + +  LI  LC+  K++ A  L + +   GL P+  +Y+ LI 
Sbjct: 313 GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA 372

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             C +G++D            + + S G  PD+  YN ++   CK G+      IFG++ 
Sbjct: 373 AFCREGRLD------VAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLG 426

Query: 387 PSCFTPDAVTFTSLIKIL 404
               +P++ ++ ++   L
Sbjct: 427 EVGCSPNSSSYNTMFSAL 444



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 132/301 (43%), Gaps = 27/301 (8%)

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           ++ +Y   L L + +   G  PD      LI  F  +  V     V+  IL     PD  
Sbjct: 97  RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVM-EILEKFGQPDVF 155

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            + +LI   C  +RI +A  +  ++R      D  TYN +I  LC  G   +AL + +++
Sbjct: 156 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQL 215

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQ 280
            + N      C+P  ITY+ +I+    E G    L     M S      M  Y  ++R  
Sbjct: 216 LSDN------CQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIR-- 267

Query: 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
                      G+CK   +  A E+ ++L   G  P+V++YNIL+R L N G+ +E +  
Sbjct: 268 -----------GMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEK- 315

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                L  ++ S    P++ TY+ILI   C+ G++     +   +     TPDA ++  L
Sbjct: 316 -----LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPL 370

Query: 401 I 401
           I
Sbjct: 371 I 371



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 117/244 (47%), Gaps = 24/244 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++IL   L +    +  ++L K +   GL PD Y+Y+ LI  FC+ GR+      
Sbjct: 327 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 386

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++     PD V + +++  LC   +  +A  +F KL   GC  +  +YNT+ + L  
Sbjct: 387 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 446

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +G  I AL++  EM + NG      +PD ITY+++I  LC+E             +F  L
Sbjct: 447 SGDKIRALHMILEMVS-NG-----IDPDEITYNSMISCLCREG--------MVDKAFELL 492

Query: 268 NKM---AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             M    F+  +V    + L       G CK  +++ A ++  S+   G  PN  TY +L
Sbjct: 493 VDMRSCEFHPSVVTYNIVLL-------GFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVL 545

Query: 325 IRGL 328
           I G+
Sbjct: 546 IEGI 549



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 2/140 (1%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  +S+N +F  L  +      L +   +   G+ PD  TYN +I+C C+ G V   F +
Sbjct: 432 PNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFEL 491

Query: 148 LGRILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           L   +RSC F P  VT+  ++   C   RI +A  +   +   GC  +  TY  LI G+ 
Sbjct: 492 LVD-MRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIG 550

Query: 207 RTGHTIVALNLFEEMANGNG 226
             G+   A+ L  ++   N 
Sbjct: 551 FAGYRAEAMELANDLVRINA 570


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 156/362 (43%), Gaps = 56/362 (15%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  ++  M  +R  +  V +FNI+   L K             +  +G+ P+  TYN ++
Sbjct: 205 AWVLYAEMFRLR-IKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIV 263

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + +C  GRV     +L  + R    PD+ T+ SLI  +C + R+ EA+ +F ++   G  
Sbjct: 264 HGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLR 323

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGN--------------------------- 225
                YNTLI+G C  G+  +A    +EM                               
Sbjct: 324 PSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECM 383

Query: 226 ----GEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
                E G+   PDAITY+ +I+G C+   A  A  L    +AS     K  +       
Sbjct: 384 IKEIQEKGI--SPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTY------- 434

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                    L+  L K +++K A +LF+ +   G++P+V+ +N LI G C++  +     
Sbjct: 435 -------TSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNV----- 482

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
            +  F L K ++   + PD  T+N ++   C+ G+V     +F  +      PD ++F +
Sbjct: 483 -KGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNT 541

Query: 400 LI 401
           LI
Sbjct: 542 LI 543



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 143/350 (40%), Gaps = 67/350 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA   F Y +  +   P + + N L     K    +    L+  +    +    YT+NI
Sbjct: 168 DEAFECF-YTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNI 226

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK G++      +G +  S   P+ VT+ +++   C+  R+  A A+ T ++   
Sbjct: 227 MINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQK 286

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            E D FTY +LI+G+C+ G    A  +FEEM            P A+ Y+T+IDG C + 
Sbjct: 287 IEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKG------LRPSAVIYNTLIDGFCNKG 340

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                                           L +A      + 
Sbjct: 341 N-----------------------------------------------LDMASAYKDEML 353

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           + G+ P + TYN LI  L  + + DE +       + K +   G+ PD  TYNILIN +C
Sbjct: 354 KKGISPTMSTYNSLIHALFMEQRTDEAE------CMIKEIQEKGISPDAITYNILINGYC 407

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL-------EINSFFRQV 413
           +       F++   +L S   P   T+TSL+ +L       E +  F+++
Sbjct: 408 RCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKI 457



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 135/321 (42%), Gaps = 60/321 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P ++++N L   L   +  D    + K +   G+ PD  TYNILIN +C+       F++
Sbjct: 359 PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLL 418

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L S   P   T+TSL+  L  ++R+ EA  LF K+   G   DV  +N LI+G C 
Sbjct: 419 HDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCS 478

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
             +   A  L ++M        +   PD +T++TI+ G C+E                  
Sbjct: 479 NSNVKGAFELLKDMDR------MKVPPDEVTFNTIMQGHCREG----------------- 515

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                         K++ ARELF  + R G+ P+ +++N LI G
Sbjct: 516 ------------------------------KVEEARELFDEMKRRGIKPDHISFNTLISG 545

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
               G + +       F +   +  TG  P + TYN L+   CK         +   ++ 
Sbjct: 546 YSRRGDIKD------AFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVS 599

Query: 388 SCFTPDAVTFTSLIK-ILEIN 407
              TPD  T+ +LI+ I ++N
Sbjct: 600 KGMTPDDTTYFTLIEGIAKVN 620



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 72  EALCVFDYML--NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +A  + D ML   ++P++   TS   L   L+K         LFK++   G+ PD   +N
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTS---LLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFN 470

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI+  C    V   F +L  + R    PD VTF ++++  C E ++ EA  LF +++  
Sbjct: 471 ALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRR 530

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           G + D  ++NTLI+G  R G    A  +  EM +          P  +TY+ ++ GLCK
Sbjct: 531 GIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTG------FNPTVLTYNALVQGLCK 583


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 155/333 (46%), Gaps = 27/333 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL   + M+  +   P   ++NI+   L K       + + + +      PD  TYNIL
Sbjct: 335 EALQPLNLMIE-KDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393

Query: 132 INCFCKMGRVSHGFVVLGRILR-SCFT-PDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +   C  G +     +L  +L+ S +T PD +++ +LI  LC E+R+ +A  ++  L   
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
               D  T N L+N   + G    A+ L++++++      +V   D  TY+ +IDG CK 
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSK----IVRNSD--TYTAMIDGFCKT 507

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                  G  C    S L    F            ++ CL+  LCK   L  A  LF+ +
Sbjct: 508 GMLNVAKGLLCKMRVSELQPSVF------------DYNCLLSSLCKEGSLDQAWRLFEEM 555

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            R    P+VV++NI+I G    G +   K  E++ +   R    GL PDL+TY+ LIN F
Sbjct: 556 QRDNNFPDVVSFNIMIDGSLKAGDI---KSAESLLVGMSR---AGLSPDLFTYSKLINRF 609

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            K+G +      F +++ S F PDA    S++K
Sbjct: 610 LKLGYLDEAISFFDKMVDSGFEPDAHICDSVLK 642



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 151/349 (43%), Gaps = 34/349 (9%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD +L  R   P   ++N L     K         +F+ +   G+ P+ YTY  LI+  
Sbjct: 269 LFDEVLE-RGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGL 327

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C +G+       L  ++     P+AVT+  +I  LC +  + +A  +   ++      D 
Sbjct: 328 CGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDN 387

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE------ 249
            TYN L+ GLC  G    A  L   M   +       +PD I+Y+ +I GLCKE      
Sbjct: 388 ITYNILLGGLCAKGDLDEASKLLYLMLKDSS----YTDPDVISYNALIHGLCKENRLHQA 443

Query: 250 ------------AG---SANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDG 292
                       AG   + N L  S + +      M  +  +   + +     +  +IDG
Sbjct: 444 LDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDG 503

Query: 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
            CK   L +A+ L   +  + L P+V  YN L+  LC +G +D+       + LF+ +  
Sbjct: 504 FCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQA------WRLFEEMQR 557

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              FPD+ ++NI+I+   K G + S   +   +  +  +PD  T++ LI
Sbjct: 558 DNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLI 606



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 146/329 (44%), Gaps = 35/329 (10%)

Query: 96  LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
           L   L ++++++   S ++++  T  F +  + + L+ C+ +M +    F VL  +L+  
Sbjct: 78  LMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRG 137

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           F  +      L+K LC      +A +L  ++R      DVF+YNT+I G C       AL
Sbjct: 138 FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKAL 197

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN-KMAFYF 274
            L  EM  G+G     C    +T+  +ID  CK       +GF     F  L   +  Y 
Sbjct: 198 ELANEM-KGSG-----CSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYT 251

Query: 275 PLVRVQCLC----------------------LNFLCLIDGLCKISKLKIARELFQSLPRA 312
            L+R  C C                      + +  LI G CK+ +LK A E+F+ +   
Sbjct: 252 SLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIER 311

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+ PNV TY  LI GLC  G+  E    + + L+ ++       P+  TYNI+IN  CK 
Sbjct: 312 GVRPNVYTYTGLIDGLCGVGKTKEA--LQPLNLMIEKDEE----PNAVTYNIIINKLCKD 365

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           G V+    I   +      PD +T+  L+
Sbjct: 366 GLVADAVEIVELMKKRRTRPDNITYNILL 394



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 150/334 (44%), Gaps = 29/334 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S+N +     + K  +  L L   +  +G      T+ ILI+ FCK G++      
Sbjct: 175 PDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGF 234

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +       D V +TSLI+  C    +    ALF ++   G      TYNTLI G C+
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  +FE M     E GV   P+  TY+ +IDGLC    +   L          L
Sbjct: 295 LGQLKEASEIFEFMI----ERGV--RPNVYTYTGLIDGLCGVGKTKEAL--------QPL 340

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N M         +   + +  +I+ LCK   +  A E+ + + +    P+ +TYNIL+ G
Sbjct: 341 NLMIEKDE----EPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGG 396

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G +DE    + ++L+ K  +S+   PD+ +YN LI+  CK  R+     I+  ++ 
Sbjct: 397 LCAKGDLDEAS--KLLYLMLK--DSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVE 452

Query: 388 SCFTPDAVT----FTSLIKILEIN---SFFRQVA 414
                D VT      S +K  ++N     ++Q++
Sbjct: 453 KLGAGDRVTTNILLNSTLKAGDVNKAMELWKQIS 486



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 141/316 (44%), Gaps = 30/316 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V + NIL   L +       +SL + +    L PD ++YN +I  FC+   +     +  
Sbjct: 142 VYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELAN 201

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +  S  +   VT+  LI   C   ++ EA     +++  G E D+  Y +LI G C  G
Sbjct: 202 EMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCG 261

Query: 210 HTIVALNLFEE-MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                  LF+E +  G+        P AITY+T+I G CK       LG    AS     
Sbjct: 262 ELDRGKALFDEVLERGDS-------PCAITYNTLIRGFCK-------LGQLKEAS----- 302

Query: 269 KMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
              F F + R V+     +  LIDGLC + K K A +    +      PN VTYNI+I  
Sbjct: 303 -EIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINK 361

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC DG + +    E V L+ KR       PD  TYNIL+   C  G +     +   +L 
Sbjct: 362 LCKDGLVADA--VEIVELMKKRRTR----PDNITYNILLGGLCAKGDLDEASKLLYLMLK 415

Query: 388 -SCFT-PDAVTFTSLI 401
            S +T PD +++ +LI
Sbjct: 416 DSSYTDPDVISYNALI 431



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 143/315 (45%), Gaps = 26/315 (8%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
            + ++ IL     K    D  +   K +   GL  D   Y  LI  FC  G +  G  + 
Sbjct: 211 SLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALF 270

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
             +L    +P A+T+ +LI+  C   ++ EA+ +F  +   G   +V+TY  LI+GLC  
Sbjct: 271 DEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGV 330

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
           G T  AL     M   +       EP+A+TY+ II+ LCK+   A+ +            
Sbjct: 331 GKTKEALQPLNLMIEKDE------EPNAVTYNIIINKLCKDGLVADAV------------ 372

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM--PNVVTYNILIR 326
           ++       R +   + +  L+ GLC    L  A +L   + +      P+V++YN LI 
Sbjct: 373 EIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIH 432

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC + ++ +    +   LL ++L +     D  T NIL+N   K G V+    ++ +I 
Sbjct: 433 GLCKENRLHQA--LDIYDLLVEKLGA----GDRVTTNILLNSTLKAGDVNKAMELWKQIS 486

Query: 387 PSCFTPDAVTFTSLI 401
            S    ++ T+T++I
Sbjct: 487 DSKIVRNSDTYTAMI 501



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 2/145 (1%)

Query: 83  MRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           MR S  +P V  +N L   L K    D    LF+ +     FPD  ++NI+I+   K G 
Sbjct: 520 MRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGD 579

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     +L  + R+  +PD  T++ LI        + EA + F K+   G E D    ++
Sbjct: 580 IKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDS 639

Query: 201 LINGLCRTGHTIVALNLFEEMANGN 225
           ++      G T     L +++ + +
Sbjct: 640 VLKYCISQGETDKLTELVKKLVDKD 664



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 57/125 (45%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V SFNI+     K     +  SL   ++  GL PD +TY+ LIN F K+G +      
Sbjct: 562 PDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISF 621

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             +++ S F PDA    S++K   ++    +   L  KL      LD     T+++ +C 
Sbjct: 622 FDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTCTVMDYMCN 681

Query: 208 TGHTI 212
           +   +
Sbjct: 682 SSANM 686


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 148/316 (46%), Gaps = 32/316 (10%)

Query: 94  NILFGCLAKTKHYDTVLS-LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           N    CL   K  D  LS L  R++  G  PD ++YN +I   C   R      +L R+ 
Sbjct: 204 NTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMT 263

Query: 153 R--SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +   C +PD V++T +I  L  E  I +A  LF ++   G   +V TYN++++ LC+   
Sbjct: 264 KGDGC-SPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARA 322

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A  +  +M      F    +PD +TY+ +I             G+SC+  +    KM
Sbjct: 323 MDKAELVLRQM------FDNSIQPDEVTYTAMIH------------GYSCLGRWKEAAKM 364

Query: 271 AFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
             +  + R   +   + F  L+D LCK  + K A E+F S+   G  P++++Y+IL+ G 
Sbjct: 365 --FKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGY 422

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
             +G+  +  +      LF  +   G+  D + +NILIN   K G +    +IF  +   
Sbjct: 423 ATEGRFVDMNN------LFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQ 476

Query: 389 CFTPDAVTFTSLIKIL 404
             +P+ VT+ ++I  L
Sbjct: 477 GVSPNVVTYATVIAAL 492



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 172/380 (45%), Gaps = 59/380 (15%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EG+I+     +A  +F+ M+  +   P V ++N +   L K +  D    + +++    +
Sbjct: 285 EGEIS-----KACNLFNEMVQ-KGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSI 338

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TY  +I+ +  +GR      +   + R    PD VTF SL+  LC   R  EAA 
Sbjct: 339 QPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAE 398

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA---------------NGNG 226
           +F  +   G + D+ +Y+ L++G    G  +   NLF  M                N + 
Sbjct: 399 IFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHA 458

Query: 227 EFGVVCE--------------PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           + G++ E              P+ +TY+T+I  LC+    A+           A+ K++ 
Sbjct: 459 KRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLAD-----------AMEKLSQ 507

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL-MPNVVTYNILIRGLCND 331
               + ++   + +  LI G C    L  A+EL   +   G+  PN+  ++ +I  LCN+
Sbjct: 508 MIS-IGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNE 566

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G++   +       +F  +   G  PD++T+N LI+ +C +G++   F +   ++ +   
Sbjct: 567 GRVMNAQD------VFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTE 620

Query: 392 PDAVTFTSLIKILEINSFFR 411
           PD VT+++L     IN +F+
Sbjct: 621 PDVVTYSTL-----INGYFK 635



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 152/336 (45%), Gaps = 28/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  +F + +  +  +P + S++IL    A    +  + +LF  +   G+  D + +NI
Sbjct: 394 KEAAEIF-HSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNI 452

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN   K G +    ++   +     +P+ VT+ ++I  LC   R+ +A    +++   G
Sbjct: 453 LINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIG 512

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + +   Y++LI G C  G  I A  L  EM +       +  P+   +S+II  LC E 
Sbjct: 513 LKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQG-----IPRPNITFFSSIIHSLCNEG 567

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRV--QCLCLNFLCLIDGLCKISKLKIARELFQS 308
                           +N    +  ++ +  +     F  LIDG C + K+  A  +  +
Sbjct: 568 --------------RVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDA 613

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +  AG  P+VVTY+ LI G    G++D+        +LF+ +    + P   TY+++++ 
Sbjct: 614 MVSAGTEPDVVTYSTLINGYFKSGRIDDG------LILFREMLCKRVKPTTVTYSLVLDG 667

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             + GR S+   +F  ++ S       T+T +++ L
Sbjct: 668 LFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGL 703



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 145/333 (43%), Gaps = 24/333 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M++    RP +T F+ +   L           +F  +   G  PD +T+N LI+ +C +G
Sbjct: 543 MMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVG 602

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           ++   F VL  ++ +   PD VT+++LI       RI +   LF ++     +    TY+
Sbjct: 603 KMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYS 662

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
            +++GL R G T  A  +F EM        +       TY+ I+ GLC+     N     
Sbjct: 663 LVLDGLFRAGRTSAAKKMFHEMIESGTAMSIS------TYTIILQGLCR-----NNCTDE 711

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
            +  F  L  M   F +       LN   +I  L K+ + + A +LF S+  +GL+PN  
Sbjct: 712 AITLFHKLGAMNLKFEIA-----ILN--TMIHALYKVKRREEAHDLFASVSASGLVPNAS 764

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           TY ++I  L  +G ++E        ++F  +  TG  P     N +I    + G +    
Sbjct: 765 TYGVMIINLLKEGSVEEAD------IMFSSMEKTGCAPSSRLLNDIIRMLLQKGEIVKAG 818

Query: 380 VIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
               ++  +  + +A T + LI +      +R+
Sbjct: 819 YYMSKVDGTIISLEASTTSLLISLFASKGRYRE 851


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 157/319 (49%), Gaps = 31/319 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV--SHGFVV 147
           V +F+ L     ++ + D  + +F+ +  +GL P+  TYN +I+  C  G V  +    +
Sbjct: 220 VYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDA-CGKGGVDFNRAAEI 278

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA-LFTKLRVFGCELDVFTYNTLINGLC 206
              +LR+   PD +TF SL+  +C    + EAA  LF+++   G E D+FTYNTL++ +C
Sbjct: 279 FDEMLRNGVQPDRITFNSLLA-VCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVC 337

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G   +A  +  EM   +        P+ +TYST+IDG  K AG  +        + + 
Sbjct: 338 KGGQMDLAFQIMSEMPRKH------IMPNVVTYSTVIDGYAK-AGRLD-------EALNL 383

Query: 267 LNKMAFY-FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            N+M F    L RV     ++  L+    K+ + + A  + + +  +G+  + VTYN L+
Sbjct: 384 FNEMKFASIGLDRV-----SYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALL 438

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G    G+      YE V  +F+ + +  +FP+L TY+ LI+ + K G       +F   
Sbjct: 439 GGYGKQGK------YEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREF 492

Query: 386 LPSCFTPDAVTFTSLIKIL 404
             +    D V +++LI  L
Sbjct: 493 KKAGLKADVVLYSALIDAL 511



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 140/303 (46%), Gaps = 25/303 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A  +FD ML     +P   +FN L     +   ++   +LF  +   G+  D +TYN 
Sbjct: 273 NRAAEIFDEMLR-NGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNT 331

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++  CK G++   F ++  + R    P+ VT++++I       R+ EA  LF +++   
Sbjct: 332 LLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFAS 391

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             LD  +YNTL++   + G    ALN+ +EM +         + DA+TY+ ++ G  K+ 
Sbjct: 392 IGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSG------IKKDAVTYNALLGGYGKQ- 444

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                        +  + ++       R+    L +  LID   K    + A E+F+   
Sbjct: 445 -----------GKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFK 493

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
           +AGL  +VV Y+ LI  LC +G +      E+       +   G+ P++ TYN +I+ F 
Sbjct: 494 KAGLKADVVLYSALIDALCKNGLV------ESAVSFLDEMTKEGIRPNVVTYNSIIDAFG 547

Query: 371 KIG 373
           + G
Sbjct: 548 RSG 550



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 125/290 (43%), Gaps = 27/290 (9%)

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI--MEAAALF 183
           Y ++ LI+ + + G       V   +  S   P+ VT+ ++I D C +  +    AA +F
Sbjct: 221 YAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVI-DACGKGGVDFNRAAEIF 279

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            ++   G + D  T+N+L+    R G    A NLF EM           E D  TY+T++
Sbjct: 280 DEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRG------IEQDIFTYNTLL 333

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           D +CK  G    L F  M+            P   +    + +  +IDG  K  +L  A 
Sbjct: 334 DAVCK--GGQMDLAFQIMSEM----------PRKHIMPNVVTYSTVIDGYAKAGRLDEAL 381

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            LF  +  A +  + V+YN L+      G+      +E    + K + S+G+  D  TYN
Sbjct: 382 NLFNEMKFASIGLDRVSYNTLLSIYAKLGR------FEEALNVCKEMESSGIKKDAVTYN 435

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
            L+  + K G+      +F  +      P+ +T+++LI +      +++ 
Sbjct: 436 ALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEA 485


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 147/340 (43%), Gaps = 42/340 (12%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           S P V  +N +          D    L   + +    PD YTYN LI   C  GR S+  
Sbjct: 130 SGPDVMVYNAMVAGYCGAGQLDAARRLVADMPVE---PDAYTYNTLIRGLCGRGRTSNAL 186

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            VL  + R    PD VT+T L++  C  S   +A  L  ++   GC  D+ TYN ++NG+
Sbjct: 187 AVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGI 246

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL----------------CKE 249
           C+ G    A+   + + +    +G  CEP+ ++Y+ ++ GL                  +
Sbjct: 247 CQEGRVEDAMEFLKNLPS----YG--CEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHK 300

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRV-----QCLC----LNFLCLIDGLCKISKLK 300
               N + F+ + SF  L +     P + V     Q  C    L++  L+   CK  K+ 
Sbjct: 301 GCPPNVVTFNMLISF--LCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIH 358

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A E  + +   G  P++V+YN L+  LC +G++D          L  +L   G  P L 
Sbjct: 359 KAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVD------VAIELLHQLKDKGCSPVLI 412

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           +YN +I+   K G+      +   +      PD +T++++
Sbjct: 413 SYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTI 452



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 159/366 (43%), Gaps = 36/366 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           + AL V + M   R   P V ++ IL     K   Y   + L   ++  G  PD  TYN+
Sbjct: 183 SNALAVLEDMFR-RGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNV 241

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++N  C+ GRV      L  +      P+ V++  ++K L    R  +A  L  ++   G
Sbjct: 242 VLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKG 301

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +V T+N LI+ LCR G    A+ + E+M     ++G  C P++++Y+ ++   CK+ 
Sbjct: 302 CPPNVVTFNMLISFLCRRGLVEPAMEVLEQMP----QYG--CTPNSLSYNPLLHAFCKQK 355

Query: 251 GSANFLGF-SCMASFSALNKMAFYFPLVRVQC----------------------LCLNFL 287
                + F   M S      +  Y  L+   C                      + +++ 
Sbjct: 356 KIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYN 415

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            +IDGL K  K K A EL   +   GL P+++TY+ +  GLC + +++E          F
Sbjct: 416 TVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEE------AVRTF 469

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407
            ++   G+ P    YN ++   CK     +   +F  ++ S   P+  T+T L++ L   
Sbjct: 470 CKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYE 529

Query: 408 SFFRQV 413
              ++ 
Sbjct: 530 GLVKEA 535



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 130/271 (47%), Gaps = 28/271 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG--F 145
           P V +FN+L   L +    +  + + +++   G  P+  +YN L++ FCK  ++     F
Sbjct: 304 PNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEF 363

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           V L  + R C+ PD V++ +L+  LC    +  A  L  +L+  GC   + +YNT+I+GL
Sbjct: 364 VEL-MVSRGCY-PDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGL 421

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
            + G T  AL L +EM +         +PD ITYSTI  GLC+E      +   C     
Sbjct: 422 TKAGKTKEALELLDEMTSKG------LQPDIITYSTIASGLCREDRIEEAVRTFCKVQDM 475

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            +   A  +          N + L  GLCK  +   A +LF  +  +G MPN  TY IL+
Sbjct: 476 GIRPTAALY----------NAILL--GLCKRRETHNAIDLFAYMISSGCMPNESTYTILV 523

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            GL  +G + E +       LF +L S G+ 
Sbjct: 524 EGLAYEGLVKEARE------LFAQLCSRGVV 548



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 108/252 (42%), Gaps = 39/252 (15%)

Query: 157 TPDAV-TFTSLIKDLCAESRIMEAAALFTKLRVFGCE-LDVFTYNTLINGLCRTGHTIVA 214
           +P AV    +LIK LCA  R  +A       RV      DV  YN ++ G C  G    A
Sbjct: 100 SPAAVGPCAALIKKLCASGRTADAR------RVLAASGPDVMVYNAMVAGYCGAGQLDAA 153

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
             L  +M           EPDA TY+T+I GLC    ++N L              A   
Sbjct: 154 RRLVADMP---------VEPDAYTYNTLIRGLCGRGRTSNAL--------------AVLE 190

Query: 275 PLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
            + R  CL   + +  L++  CK S  K A +L   +   G  P++VTYN+++ G+C +G
Sbjct: 191 DMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEG 250

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           ++++   +       K L S G  P+  +YNI++       R      +   +      P
Sbjct: 251 RVEDAMEF------LKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPP 304

Query: 393 DAVTFTSLIKIL 404
           + VTF  LI  L
Sbjct: 305 NVVTFNMLISFL 316



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 14/125 (11%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           LI  LC   +   AR +      A   P+V+ YN ++ G C  GQ+D  +         +
Sbjct: 110 LIKKLCASGRTADARRVL-----AASGPDVMVYNAMVAGYCGAGQLDAAR---------R 155

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            +    + PD YTYN LI   C  GR S+   +   +      PD VT+T L++     S
Sbjct: 156 LVADMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRS 215

Query: 409 FFRQV 413
            ++Q 
Sbjct: 216 GYKQA 220



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 56/143 (39%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           + L  +   P + S+N +   L K       L L   +   GL PD  TY+ + +  C+ 
Sbjct: 400 HQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCRE 459

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
            R+        ++      P A  + +++  LC       A  LF  +   GC  +  TY
Sbjct: 460 DRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTY 519

Query: 199 NTLINGLCRTGHTIVALNLFEEM 221
             L+ GL   G    A  LF ++
Sbjct: 520 TILVEGLAYEGLVKEARELFAQL 542


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 153/369 (41%), Gaps = 43/369 (11%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VF  M + +   P V ++  +   L +    D   ++   L  +G+ P   TYN+L++  
Sbjct: 197 VFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDAL 256

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           CK GRV   F + GR++     P  VTF  LI  L    +  E  A+  +++ FG   + 
Sbjct: 257 CKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNE 316

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN- 254
             YN +I   CR GH   AL LF+EM +   +  VV      TY+ I   LCKE    + 
Sbjct: 317 VIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVV------TYNLIAKALCKEGEMEHA 370

Query: 255 ------FLGFSCMASFSALNKMAFY---------FPLVRVQCLCLNFL--------CLID 291
                  L    M   S  N +  +           L  ++ +   FL          I 
Sbjct: 371 EKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQ 430

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
            LCK  K + A E++  +   GL  NV T N LI GLC    M E         + K + 
Sbjct: 431 ELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATK------VLKAMV 484

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT-------SLIKIL 404
           ++G+  D  TYNI+I   CK  ++     +   ++   F PD  TF        +L K+ 
Sbjct: 485 NSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVE 544

Query: 405 EINSFFRQV 413
           EI     Q+
Sbjct: 545 EILHLLDQM 553



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 132/304 (43%), Gaps = 29/304 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  V   M+N       +T +NI+     K    D  + L   +   G  PD +T+NI
Sbjct: 474 KEATKVLKAMVNSGVELDRIT-YNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNI 532

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            ++ +C +G+V     +L ++      PD VT+ ++I   C    + +A    T+L   G
Sbjct: 533 FLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNG 592

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYSTIIDGLCKE 249
              +   YN LI G  R G+   A+ + + M  NG        +P  +TY+++       
Sbjct: 593 LRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNG-------IQPTPVTYNSL------- 638

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                 + + C A      K  F   +V+ ++   + +  +I G CKI K+  A   F+ 
Sbjct: 639 ------MYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKE 692

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G+ PN +TY  L+      G  +E         LF  + S G+ PD  +YN LI+ 
Sbjct: 693 MHSRGIPPNKMTYTTLMFAYSKSGNKEEASK------LFDEMVSLGIVPDSVSYNTLISG 746

Query: 369 FCKI 372
           FC++
Sbjct: 747 FCEV 750



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 144/326 (44%), Gaps = 27/326 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V + N L   L +  +      + K +  +G+  DR TYNI+I   CK  ++     +  
Sbjct: 457 VATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRD 516

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +++  F PD  TF   +   C   ++ E   L  +++  G + D+ TY T+I+G C+  
Sbjct: 517 DMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAK 576

Query: 210 HTIVALN-LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
               A   L E M NG         P+A+ Y+ +I G  +    ++ +G         L+
Sbjct: 577 DMHKANEYLTELMKNG-------LRPNAVIYNALIGGYGRNGNISDAIGI--------LD 621

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
            M +      +Q   + +  L+  +C    ++  + +F       +   V+ Y I+I+G 
Sbjct: 622 TMKYN----GIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGF 677

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C  G++DE   Y      FK ++S G+ P+  TY  L+  + K G       +F  ++  
Sbjct: 678 CKIGKIDEAVMY------FKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSL 731

Query: 389 CFTPDAVTFTSLIK-ILEINSFFRQV 413
              PD+V++ +LI    E++S  + V
Sbjct: 732 GIVPDSVSYNTLISGFCEVDSLDKMV 757



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 129/334 (38%), Gaps = 53/334 (15%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L  T   D VL L + +    L P+       I   CK G+      +  ++L      +
Sbjct: 397 LRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVN 456

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
             T  +LI  LC  + + EA  +   +   G ELD  TYN +I G C+      A+ L +
Sbjct: 457 VATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRD 516

Query: 220 EMANGNGE---------------FGVVCE--------------PDAITYSTIIDGLCKEA 250
           +M     +                G V E              PD +TY TIIDG CK  
Sbjct: 517 DMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKA- 575

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQ 307
                           ++K   Y   +    L  N   +  LI G  +   +  A  +  
Sbjct: 576 --------------KDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILD 621

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           ++   G+ P  VTYN L+  +C+ G ++E K       +F +     +   +  Y I+I 
Sbjct: 622 TMKYNGIQPTPVTYNSLMYWMCHAGLVEEVK------AVFAQCIVKDIELGVIGYTIIIQ 675

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            FCKIG++    + F  +      P+ +T+T+L+
Sbjct: 676 GFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLM 709



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 99/233 (42%), Gaps = 23/233 (9%)

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
           A   +  AA  F +L   G    + T + L+  L   G   VA  +F EM +G       
Sbjct: 152 APGSLSRAADAFLELSARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGK-----T 206

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
             PD  TY+ +I  LC+ AG  +       A+F+ L ++        +Q   + +  L+D
Sbjct: 207 VAPDVHTYTAMIKALCR-AGEID-------AAFAMLAELRRS----GIQPTVVTYNVLMD 254

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
            LCK  +++ A  L   +    + P++VT+ ILI GL    Q  E      V  + + + 
Sbjct: 255 ALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGE------VGAVLQEMQ 308

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             G+ P+   YN +I   C+ G  S    +F  ++        VT+  + K L
Sbjct: 309 GFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKAL 361



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 9/128 (7%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAG--LMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
           L++ L    +L +AR++F  + R G  + P+V TY  +I+ LC  G++D        F +
Sbjct: 181 LVEALGCGGQLDVARKVFGEM-RDGKTVAPDVHTYTAMIKALCRAGEID------AAFAM 233

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406
              L  +G+ P + TYN+L++  CK GRV   F + GR++     P  VTF  LI  L  
Sbjct: 234 LAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLAR 293

Query: 407 NSFFRQVA 414
              F +V 
Sbjct: 294 GQQFGEVG 301


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 136/311 (43%), Gaps = 24/311 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +++ L     K       L +F  +   G  PD   YN+LI+C  K G+V     +L 
Sbjct: 335 VFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLE 394

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            + R    PD  T+  +I  L +  R  +A + F  ++      DV TYNTL+NGL +  
Sbjct: 395 DMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLR 454

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
            T  A +LF+EM          C PD  T+ T+ID L K     + L  S     + L K
Sbjct: 455 RTDEACDLFDEMQANK------CMPDLTTFGTLIDTLAKAGRMEDALEQS-----ARLVK 503

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           M  + P   +      +  LI G C+  ++    ELFQ +      P+ +TY IL+ G  
Sbjct: 504 MG-HAPNSYI------YNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFS 556

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
             G      H      L + +   G  P L TYN+LI      G+V   + +F  ++   
Sbjct: 557 RRG------HTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKG 610

Query: 390 FTPDAVTFTSL 400
           F PD  T+++L
Sbjct: 611 FNPDMQTYSAL 621



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 150/362 (41%), Gaps = 43/362 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYTYN 129
            +A+ +FD M       P V ++N L     K    D  L +F+RL   G   P+  +++
Sbjct: 106 EQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFD 165

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            L+   CKM R +    V   +L +    D     +LI   C    + +A  L   +   
Sbjct: 166 TLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAH 225

Query: 190 GCELDVFTYNTLINGLCRTG--HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL- 246
            C  D FTY  L+N  CR G  H + +   F E+A  +G     C   A+ Y+ II G  
Sbjct: 226 ACARDAFTYGILVNAHCRAGQMHEVAS---FMELARHDG-----CALSAVNYNFIIQGFI 277

Query: 247 -CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL----------------------C 283
            C     A  L  S M   S  +   F + L+   C                        
Sbjct: 278 RCGRLAEATQLFESTMTKESVPD--VFTYNLLIALCKSKQLEEALTLFQEAEQGGVVLDV 335

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
             +  L+D   K  +   A E+F ++ +AG MP+ V YN+LI  L   G++DE       
Sbjct: 336 FTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDE------A 389

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
             L + +N  G+ PD  TYNI+I+     GR    +  FG +     +PD VT+ +L+  
Sbjct: 390 LELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNG 449

Query: 404 LE 405
           L+
Sbjct: 450 LK 451



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 135/301 (44%), Gaps = 35/301 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL VF Y +      P    +N+L  CL K    D  L L + +N  G+ PD  TYNI+
Sbjct: 353 KALEVF-YNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIV 411

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+     GR    +   G + R   +PD VT+ +L+  L    R  EA  LF +++   C
Sbjct: 412 IDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKC 471

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMAN-GNGEFGVVCEPDAITYSTIIDGLCKEA 250
             D+ T+ TLI+ L + G    AL     +   G+        P++  Y+ +I G C+ +
Sbjct: 472 MPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHA-------PNSYIYNALISGFCR-S 523

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELF 306
           G  +         +     M        ++C C    + +  L+ G  +     +A EL 
Sbjct: 524 GQVD-------KGYELFQDM--------IECSCFPDSITYTILVLGFSRRGHTSMAMELL 568

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           Q + R G  P + TYN+LIR L   GQ+      E  + LFK + + G  PD+ TY+ L 
Sbjct: 569 QEMVREGHTPALATYNVLIRSLSMAGQV------EDAYTLFKEMIAKGFNPDMQTYSALP 622

Query: 367 N 367
           N
Sbjct: 623 N 623



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 147/342 (42%), Gaps = 40/342 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  +F+  +  + S P V ++N+L   L K+K  +  L+LF+     G+  D +TY+ L
Sbjct: 284 EATQLFESTMT-KESVPDVFTYNLLIA-LCKSKQLEEALTLFQEAEQGGVVLDVFTYSYL 341

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ F K GR +    V   + ++   PD V +  LI  L  + ++ EA  L   +   G 
Sbjct: 342 MDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGI 401

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--- 248
             D  TYN +I+ L   G    A + F  M            PD +TY+T+++GL K   
Sbjct: 402 MPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHS------PDVVTYNTLLNGLKKLRR 455

Query: 249 --EAGS--ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
             EA           CM   +                    F  LID L K  +++ A E
Sbjct: 456 TDEACDLFDEMQANKCMPDLT-------------------TFGTLIDTLAKAGRMEDALE 496

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
               L + G  PN   YN LI G C  GQ+D  K YE    LF+ +     FPD  TY I
Sbjct: 497 QSARLVKMGHAPNSYIYNALISGFCRSGQVD--KGYE----LFQDMIECSCFPDSITYTI 550

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406
           L+  F + G  S    +   ++    TP   T+  LI+ L +
Sbjct: 551 LVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSM 592



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 154/389 (39%), Gaps = 74/389 (19%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +AL VF  ML     +  V   N L  C  +         L   +       D +TY IL
Sbjct: 179 DALAVFQEMLGA-GLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGIL 237

Query: 132 INCFCKMGRVS-------------------------HGFVVLGRILRSC----------F 156
           +N  C+ G++                           GF+  GR+  +            
Sbjct: 238 VNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKES 297

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
            PD  T+  LI  LC   ++ EA  LF +    G  LDVFTY+ L++   + G    AL 
Sbjct: 298 VPDVFTYNLLIA-LCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALE 356

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF------------------ 258
           +F  M          C PD + Y+ +I  L K+      L                    
Sbjct: 357 VFYNMQKAG------CMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNI 410

Query: 259 --SCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
               ++S     K   +F +++ +      + +  L++GL K+ +   A +LF  +    
Sbjct: 411 VIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANK 470

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
            MP++ T+  LI  L   G+M++            RL   G  P+ Y YN LI+ FC+ G
Sbjct: 471 CMPDLTTFGTLIDTLAKAGRMEDALEQSA------RLVKMGHAPNSYIYNALISGFCRSG 524

Query: 374 RVSSGFVIFGRILP-SCFTPDAVTFTSLI 401
           +V  G+ +F  ++  SCF PD++T+T L+
Sbjct: 525 QVDKGYELFQDMIECSCF-PDSITYTILV 552



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 129/334 (38%), Gaps = 64/334 (19%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGR---------------------------- 140
            L+ +K L   GL  D +T   ++   CK+GR                            
Sbjct: 2   ALATYKHLLKAGLPVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQ 61

Query: 141 -------VSHGFVVLGRILRSCF-TPDAVTFTSLIKDLCAESRIMEAAALFTKLR-VFGC 191
                  +     +L  + R  F  PD V FT+ +  LC   R+ +A  LF  +R    C
Sbjct: 62  AFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDC 121

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV  YNTLI G C+ G    AL++F  +          C+P+A+++ T++  LCK + 
Sbjct: 122 APDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGS-----CKPNAVSFDTLVIFLCKMS- 175

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIARELFQSL 309
                         A + +A +  ++         +C  LI   C++  L+ AR L   +
Sbjct: 176 -------------RATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHM 222

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
                  +  TY IL+   C  GQM E       F+   R +   L      YN +I  F
Sbjct: 223 TAHACARDAFTYGILVNAHCRAGQMHEV----ASFMELARHDGCAL--SAVNYNFIIQGF 276

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
            + GR++    +F   +     PD  T+  LI +
Sbjct: 277 IRCGRLAEATQLFESTMTKESVPDVFTYNLLIAL 310


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 152/316 (48%), Gaps = 26/316 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R  V  FN+L     +       + L + +   G  PD  TYN L+N FCK+G +     
Sbjct: 14  RRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKK 73

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++G I      P+ +T+T+LI   C    + +A  ++ ++ V     DV TY  ++NGLC
Sbjct: 74  LMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLC 133

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           ++G    A ++F EM     E GVV  P+  +Y+T+ID L KE   A         +F  
Sbjct: 134 KSGKVEEAKSVFREME----EVGVV--PNRFSYATLIDSLFKEGNVAE--------AFVL 179

Query: 267 LNKMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             +M     +VR +    + +  L+DGL K      A ++FQ L    L+PN VTY+ LI
Sbjct: 180 QGRM-----VVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALI 234

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C  G +++ +      LL + +    +FP++  Y+ +++ + K G ++    +  ++
Sbjct: 235 DGHCKLGDVNKGE------LLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKM 288

Query: 386 LPSCFTPDAVTFTSLI 401
           +     P+   + +LI
Sbjct: 289 VQRNILPNVFVYGTLI 304



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 166/431 (38%), Gaps = 85/431 (19%)

Query: 6   KINGRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDI 65
           K +GRM  AD L +   S                R  + DR +    +    K+  E D 
Sbjct: 343 KRSGRMEEADELFKDMMS----------------RGLLPDRVNYTSMMDGFFKAGKESDA 386

Query: 66  TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
            +I            +  + S   V ++N+L   L K   Y++  S    +   GL PD 
Sbjct: 387 FNIAQE---------MTEKSSGFDVVAYNVLINGLFKLGKYESE-SFHTGMRQLGLAPDS 436

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            T+N +IN +CK G + +   +L  +      P+++T   L++ LCA   I +   L   
Sbjct: 437 ATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLND 496

Query: 186 LRV-----------------------------------FGCELDVFTYNTLINGLCRTGH 210
           + V                                    G +LD+ TYNTLI+  CR G 
Sbjct: 497 MLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGM 556

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A  +F++M       G     D ITY+ +I G C        +      +F+  ++M
Sbjct: 557 IRRATLVFKDM------MGKGILADIITYNALIHGYC--------ISSHLKKAFAVHSQM 602

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                   V+     +  L+ GL     +K A  L   +   GL+PN  TY+IL+ G   
Sbjct: 603 LTEGVSPNVET----YNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGK 658

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G M E         L+  + + G  P   TYN+LI+CF K  ++S    +   +     
Sbjct: 659 IGNMKE------CVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGI 712

Query: 391 TPDAVTFTSLI 401
            P++ T+  LI
Sbjct: 713 PPNSSTYDILI 723



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 143/343 (41%), Gaps = 26/343 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA+ V   M+  R   P V  +  L     K       L LFK +   GL  + +  + 
Sbjct: 279 NEAMDVMRKMVQ-RNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDS 337

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            +N   + GR+     +   ++     PD V +TS++       +  +A  +  ++    
Sbjct: 338 FVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKS 397

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV  YN LINGL + G        +E  +   G   +   PD+ T++T+I+  CKE 
Sbjct: 398 SGFDVVAYNVLINGLFKLGK-------YESESFHTGMRQLGLAPDSATFNTMINAYCKEG 450

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              N L          LN+M  Y   ++   +  N   L+  LC   +++   +L   + 
Sbjct: 451 NLGNALKL--------LNEMKSYG--LKPNSITCNI--LVQRLCAAGEIEKTMDLLNDML 498

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P   T+  ++          +++  + +  +  +L   G+  DL TYN LI+ FC
Sbjct: 499 VMGFHPTPTTHKAVLDA------SSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFC 552

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           ++G +    ++F  ++      D +T+ +LI    I+S  ++ 
Sbjct: 553 RLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKA 595



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 134/315 (42%), Gaps = 25/315 (7%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L ++   +    LFK +   GL PDR  Y  +++ F K G+ S  F +   +       D
Sbjct: 342 LKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFD 401

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V +  LI  L    +  E+ +  T +R  G   D  T+NT+IN  C+ G+   AL L  
Sbjct: 402 VVAYNVLINGLFKLGKY-ESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLN 460

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM +    +G+  +P++IT + ++  LC  AG         M   + +  M F+ P    
Sbjct: 461 EMKS----YGL--KPNSITCNILVQRLCA-AGEIE----KTMDLLNDMLVMGFH-PTPTT 508

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                    ++D   K  +  +   +   L   G+  ++ TYN LI   C  G +     
Sbjct: 509 HK------AVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRAT- 561

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
                L+FK +   G+  D+ TYN LI+ +C    +   F +  ++L    +P+  T+  
Sbjct: 562 -----LVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNI 616

Query: 400 LIKILEINSFFRQVA 414
           L+  L      ++ A
Sbjct: 617 LLGGLSAARLIKEAA 631



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 121/277 (43%), Gaps = 24/277 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P  T+   +    +K++  D +L +  +L   G+  D  TYN LI+ FC++G +    +
Sbjct: 503 HPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATL 562

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   ++      D +T+ +LI   C  S + +A A+ +++   G   +V TYN L+ GL 
Sbjct: 563 VFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLS 622

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A  L  +M     E G+V  P+A TY  ++ G  K       +   C      
Sbjct: 623 AARLIKEAAGLVNQMK----ERGLV--PNATTYDILVSGHGKIGNMKECVKLYCEMITKG 676

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                 + P  R       +  LI    K  K+  A+EL Q +   G+ PN  TY+ILI 
Sbjct: 677 ------FVPKTRT------YNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILIC 724

Query: 327 G---LCNDGQMDET--KHYET-VFLLFKRLNSTGLFP 357
           G   L    +++++  + Y+     LF+ +N  G  P
Sbjct: 725 GWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIP 761



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 81/218 (37%), Gaps = 64/218 (29%)

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           V  +N LI+G CR G    A+ L E M            PD +TY+T             
Sbjct: 17  VEHFNVLIDGYCRNGEISRAVELLEGMKTEG------PAPDIVTYNT------------- 57

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                                             L++G CKI  L  A++L   +    L
Sbjct: 58  ----------------------------------LMNGFCKIGDLFTAKKLMGEISLVNL 83

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            PNV+TY  LI   C      +++  E    ++  +    L PD+ TY  ++N  CK G+
Sbjct: 84  EPNVITYTTLIDAYC------KSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           V     +F  +      P+  ++ +L     I+S F++
Sbjct: 138 VEEAKSVFREMEEVGVVPNRFSYATL-----IDSLFKE 170


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 155/333 (46%), Gaps = 27/333 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           PPV  +N++     +    D+   L+K + + G+ P+ YT N+LI   C  GR      V
Sbjct: 114 PPVYLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREV 173

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++      P+  +F  L++  C     M A  L   +  FG + +   YNTLI+  CR
Sbjct: 174 FDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCR 233

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  L E M   +G F     PD +T+++ I  LC  AG         + +    
Sbjct: 234 EGRNEEAERLVERMRE-DGLF-----PDVVTFNSRISALCS-AG-------KILEASRIF 279

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             M     L   +     F  +++G CK   L+ A+ L +S+ R G +  + +YNI + G
Sbjct: 280 RDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLG 339

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           L  +G++ E +      L  K +   G+ P++Y++N +++  CK G +S   +I G ++ 
Sbjct: 340 LVRNGKLLEAQ------LALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMIS 393

Query: 388 SCFTPDAVTFTSLI-------KILEINSFFRQV 413
           S   PD VT+++L+       K+L+ N+   ++
Sbjct: 394 SGIGPDTVTYSTLLHGCCSTGKVLKANNILHEM 426



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 160/366 (43%), Gaps = 72/366 (19%)

Query: 90  VTSFNI-LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           + S+NI L G +   K  +  L+L K +   G+ P+ Y++N +++  CK G +S   +++
Sbjct: 330 LESYNIWLLGLVRNGKLLEAQLAL-KEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIM 388

Query: 149 GRILRSCFTPDAVTFTSLIKDLCA-----------------------------------E 173
           G ++ S   PD VT+++L+   C+                                   E
Sbjct: 389 GLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKE 448

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM--------AN-G 224
            RI EA  L  K+     +LD  T N +I+GLC++G    A+ + E M         N G
Sbjct: 449 GRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLG 508

Query: 225 NGEFGVV--------CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276
           N   G+V        C PD ITYS II+GLCK    A  L  +       + K      +
Sbjct: 509 NSFIGLVDSSSNGKKCLPDLITYSIIINGLCK----AGRLDEARKKFIEMVGKSLHPDSI 564

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
           +        +   I   CK  K+  A  + + + + G   ++ TYN LI GL +  Q+ E
Sbjct: 565 I--------YDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFE 616

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                 ++ L   +   G+ P++ TYN +I+C C+ GR+     +   +L    +P+  +
Sbjct: 617 ------IYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISS 670

Query: 397 FTSLIK 402
           F  LIK
Sbjct: 671 FRLLIK 676



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 142/338 (42%), Gaps = 47/338 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP +T+FN++     K    +   +L + +   G   +  +YNI +    + G++    +
Sbjct: 292 RPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQL 351

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L  ++     P+  +F +++  LC    I +A  +   +   G   D  TY+TL++G C
Sbjct: 352 ALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCC 411

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            TG  + A N+  EM          C P+  T + ++  L KE        F        
Sbjct: 412 STGKVLKANNILHEMMRRG------CSPNTYTCNILLHSLWKEGRI-----FEAEKLLQK 460

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL------------ 314
           +N+ +  + L  V C       +IDGLCK  KL  A E+ + +   G             
Sbjct: 461 MNERS--YDLDNVTC-----NIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIG 513

Query: 315 -----------MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
                      +P+++TY+I+I GLC  G++DE +        F  +    L PD   Y+
Sbjct: 514 LVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKK------FIEMVGKSLHPDSIIYD 567

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             I+ FCK G++SS F +   +          T+ SLI
Sbjct: 568 TFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLI 605



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 154/377 (40%), Gaps = 62/377 (16%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P    +N L     +    +    L +R+   GLFPD  T+N  I+  C  G++    +
Sbjct: 218 QPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKI----L 273

Query: 147 VLGRILRSCFT--------PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
              RI R            P+  TF  +++  C E  + EA  L   ++  G  +++ +Y
Sbjct: 274 EASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESY 333

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE---AGSANF 255
           N  + GL R G  + A    +EM +         EP+  +++T++DGLCK    + +   
Sbjct: 334 NIWLLGLVRNGKLLEAQLALKEMVDKG------IEPNIYSFNTVMDGLCKNGLISDARMI 387

Query: 256 LGF------------------SCMASFSALNKMAFYFPLVRVQCLCLNFLC--LIDGLCK 295
           +G                    C ++   L        ++R  C    + C  L+  L K
Sbjct: 388 MGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWK 447

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH-YETVF---------- 344
             ++  A +L Q +       + VT NI+I GLC  G++DE     E ++          
Sbjct: 448 EGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNL 507

Query: 345 ------LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                 L+    N     PDL TY+I+IN  CK GR+      F  ++     PD++ + 
Sbjct: 508 GNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYD 567

Query: 399 SLI----KILEINSFFR 411
           + I    K  +I+S FR
Sbjct: 568 TFIHSFCKHGKISSAFR 584



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 114/288 (39%), Gaps = 36/288 (12%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R   P   + NIL   L K         L +++N      D  T NI+I+  CK G++  
Sbjct: 429 RGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDE 488

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
                  I+   +   +    +L         ++++++   K     C  D+ TY+ +IN
Sbjct: 489 AV----EIVEGMWIHGSAALGNLGNSFIG---LVDSSSNGKK-----CLPDLITYSIIIN 536

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GLC+ G    A   F EM       G    PD+I Y T I   CK             ++
Sbjct: 537 GLCKAGRLDEARKKFIEMV------GKSLHPDSIIYDTFIHSFCKHG--------KISSA 582

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           F  L  M        +Q     +  LI GL   +++     L   +   G+ PN+ TYN 
Sbjct: 583 FRVLKDMEKRGCNKSLQT----YNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNN 638

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           +I  LC  G++ +         L   +   G+ P++ ++ +LI  FCK
Sbjct: 639 MISCLCEGGRIKDATS------LLDEMLQKGISPNISSFRLLIKAFCK 680



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 124/314 (39%), Gaps = 29/314 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N  + + D   N +   P + +++I+   L K    D     F  +    L PD   Y+ 
Sbjct: 509 NSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDT 568

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            I+ FCK G++S  F VL  + +        T+ SLI  L ++++I E   L   ++  G
Sbjct: 569 FIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKG 628

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN------------------GEFGVVC 232
              ++ TYN +I+ LC  G    A +L +EM                       +FGVV 
Sbjct: 629 ITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKASDFGVVK 688

Query: 233 EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL---NFLCL 289
           E   I  S     +C    +   L F+ +     +++    F     +C  L    +  L
Sbjct: 689 EVFEIALS-----ICGHKEALYSLMFNELLIGGEVSEAKELFDAALDRCFDLGNFQYNDL 743

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           I+ LCK   L+ A ++   +   G   +  ++  +I GL   G+  +        +    
Sbjct: 744 IEKLCKDEMLENASDILHKMIDKGYRFDPASFMPVIDGLGKRGKKHDADELAERMM---D 800

Query: 350 LNSTGLFPDLYTYN 363
           + S G+  +  T N
Sbjct: 801 MASEGMVENKITRN 814


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 132/293 (45%), Gaps = 25/293 (8%)

Query: 111  SLFKRLNLTGLFPDRYTYNIL-INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
            ++F  +++ G+ PD  +Y ++ I CF + G++      L  +++  F PD  T T ++  
Sbjct: 804  NVFDEMSVRGVVPDSSSYKLMVIGCF-RDGKIQEADRWLTGMIQRGFIPDNATCTLILTA 862

Query: 170  LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
            LC    +  A   F K+   G + ++  + +LI+GLC+ G    A  + EEM   NG   
Sbjct: 863  LCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVR-NG--- 918

Query: 230  VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCL 289
               +P+  T++ +IDGLCK   +           F  L +   Y P V        +  +
Sbjct: 919  --WKPNVYTHTALIDGLCKRGWTEKAFRL-----FLKLVRSDTYKPNVHT------YTSM 965

Query: 290  IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
            I G CK  KL  A  LF  +   GL PNV TY  LI G C  G       +   + L   
Sbjct: 966  IGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGS------FGRAYELMNL 1019

Query: 350  LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            +   G  P++YTYN  I+  CK  R    + +  +        D VT+T LI+
Sbjct: 1020 MGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQ 1072



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 154/358 (43%), Gaps = 45/358 (12%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            N A+  F  M+++   +P + +F  L   L K         + + +   G  P+ YT+  
Sbjct: 870  NRAIWYFRKMIDL-GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTA 928

Query: 131  LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI+  CK G     F +  +++RS  + P+  T+TS+I   C E ++  A  LF++++  
Sbjct: 929  LIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQ 988

Query: 190  GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            G   +V TY TLING C+ G    A  L   M    G+ G +  P+  TY+  ID LCK+
Sbjct: 989  GLFPNVNTYTTLINGHCKAGSFGRAYELMNLM----GDEGFM--PNIYTYNAAIDSLCKK 1042

Query: 250  AGSANFL-----GFSCMASFSALNKMAFYFPLVRVQC------LCLNFLC---------- 288
            + +          FSC      +     Y  L++ QC        L F C          
Sbjct: 1043 SRAPEAYELLNKAFSCGLEADGVT----YTILIQEQCKQNDINQALAFFCRMNKTGFEAD 1098

Query: 289  ------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
                  LI   C+  K+K +  LFQ +   GL+P   TY  +I   C +G +D    Y  
Sbjct: 1099 MRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKY-- 1156

Query: 343  VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                F  +   G  PD +TY  LI+  CK   V     ++  ++    +P  VT  +L
Sbjct: 1157 ----FHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTL 1210



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 147/328 (44%), Gaps = 38/328 (11%)

Query: 73   ALCVFDYMLNMRPSRPPVTSFNIL-FGCL--AKTKHYDTVLS-LFKRLNLTGLFPDRYTY 128
            A  VFD M ++R   P  +S+ ++  GC    K +  D  L+ + +R    G  PD  T 
Sbjct: 802  AENVFDEM-SVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQR----GFIPDNATC 856

Query: 129  NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
             +++   C+ G V+       +++   F P+ + FTSLI  LC +  I +A  +  ++  
Sbjct: 857  TLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVR 916

Query: 189  FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
             G + +V+T+  LI+GLC+ G T  A  LF ++   +       +P+  TY+++I G CK
Sbjct: 917  NGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD-----TYKPNVHTYTSMIGGYCK 971

Query: 249  EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIAREL 305
            E                 LN+    F  ++ Q L  N   +  LI+G CK      A EL
Sbjct: 972  E---------------DKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYEL 1016

Query: 306  FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
               +   G MPN+ TYN  I  LC   +  E       + L  +  S GL  D  TY IL
Sbjct: 1017 MNLMGDEGFMPNIYTYNAAIDSLCKKSRAPE------AYELLNKAFSCGLEADGVTYTIL 1070

Query: 366  INCFCKIGRVSSGFVIFGRILPSCFTPD 393
            I   CK   ++     F R+  + F  D
Sbjct: 1071 IQEQCKQNDINQALAFFCRMNKTGFEAD 1098



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 125/288 (43%), Gaps = 29/288 (10%)

Query: 120  GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
            GL P   T N ++    ++G + +   V   +      PD+ ++  ++     + +I EA
Sbjct: 778  GLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEA 837

Query: 180  AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
                T +   G   D  T   ++  LC  G    A+  F +M +      +  +P+ I +
Sbjct: 838  DRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMID------LGFKPNLINF 891

Query: 240  STIIDGLCKEAGSANFLGFSCMASFSALNKMAF--YFPLVRVQCLCLNFLCLIDGLCKIS 297
            +++IDGLCK+         S   +F  L +M    + P V           LIDGLCK  
Sbjct: 892  TSLIDGLCKKG--------SIKQAFEMLEEMVRNGWKPNVYTHT------ALIDGLCKRG 937

Query: 298  KLKIARELFQSLPRAG-LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
              + A  LF  L R+    PNV TY  +I G C + +++  +      +LF R+   GLF
Sbjct: 938  WTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAE------MLFSRMKEQGLF 991

Query: 357  PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            P++ TY  LIN  CK G     + +   +    F P+  T+ + I  L
Sbjct: 992  PNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSL 1039



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 25/272 (9%)

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            ++  F ++GR++    ++  +     TP ++T   +++       I  A  +F ++ V G
Sbjct: 754  MLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRG 813

Query: 191  CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
               D  +Y  ++ G  R G    A    +    G  + G +  PD  T + I+  LC+  
Sbjct: 814  VVPDSSSYKLMVIGCFRDGKIQEA----DRWLTGMIQRGFI--PDNATCTLILTALCE-- 865

Query: 251  GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
               N L    +  F  +  + F   L+       NF  LIDGLCK   +K A E+ + + 
Sbjct: 866  ---NGLVNRAIWYFRKMIDLGFKPNLI-------NFTSLIDGLCKKGSIKQAFEMLEEMV 915

Query: 311  RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF-PDLYTYNILINCF 369
            R G  PNV T+  LI GLC  G        E  F LF +L  +  + P+++TY  +I  +
Sbjct: 916  RNGWKPNVYTHTALIDGLCKRGWT------EKAFRLFLKLVRSDTYKPNVHTYTSMIGGY 969

Query: 370  CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            CK  +++   ++F R+      P+  T+T+LI
Sbjct: 970  CKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLI 1001



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 9/168 (5%)

Query: 52   FLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
             ++E+CK   + DI     N+AL  F  M N       +   NIL     + K       
Sbjct: 1070 LIQEQCK---QNDI-----NQALAFFCRM-NKTGFEADMRLNNILIAAFCRQKKMKESER 1120

Query: 112  LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
            LF+ +   GL P + TY  +I+C+CK G +         + R    PD+ T+ SLI  LC
Sbjct: 1121 LFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLC 1180

Query: 172  AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
             +S + EA  L+  +   G      T  TL    C+   +  A+ L E
Sbjct: 1181 KKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLE 1228


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 125/275 (45%), Gaps = 24/275 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V SFN L     +    D    L   ++ +G+ PD YTY++LIN  CK  ++     
Sbjct: 168 RPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANE 227

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L     P+ VTFT+LI   C   R+  A  ++ ++       D+ TYNTLI GLC
Sbjct: 228 LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLC 287

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G    A +L +EM+          +PD ITY+T+IDG CKE             +F  
Sbjct: 288 RKGDLKQARDLIDEMSMKG------LKPDKITYTTLIDGXCKEG--------DLETAFEH 333

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +M        +Q   + +  LI GLC+  +   A ++ + +   GL P+ +TY ++I 
Sbjct: 334 RKRMI----QENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIIN 389

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
             C  G +       T   L K +   G  P + T
Sbjct: 390 EFCKKGDV------WTGSKLLKEMQRDGQMPSVVT 418



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 141/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + ++G +  GF +   + 
Sbjct: 139 FNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMH 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLC++             S   L     
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V +G  +   +      
Sbjct: 361 RYLDAEK-------VLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQM 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 138/302 (45%), Gaps = 24/302 (7%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L K K++  V   ++ +   G     Y +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPS 170

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V+F +L+        + E   L T +   G + DV+TY+ LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM +     G+V  P+ +T++T+IDG CK  G  +      M  +  +   +    L+  
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKN-GRVDL----AMEIYKQMLSQSLSPDLI-- 277

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                 +  LI GLC+   LK AR+L   +   GL P+ +TY  LI G C +G +     
Sbjct: 278 -----TYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDL----- 327

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
            ET F   KR+    +  D   Y  LI+  C+ GR      +   +L     PD +T+T 
Sbjct: 328 -ETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTM 386

Query: 400 LI 401
           +I
Sbjct: 387 II 388



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 29/142 (20%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK---------- 338
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +          
Sbjct: 107 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWG 166

Query: 339 -------------------HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                                +  F L   ++++G+ PD+YTY++LIN  CK  ++    
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  +L     P+ VTFT+LI
Sbjct: 227 ELFDEMLDKGLVPNGVTFTTLI 248



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 47/110 (42%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++M+  +P   ++  L     K    +T     KR+    +  D   Y  LI+  C+ GR
Sbjct: 302 MSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGR 361

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
                 VL  +L     PD +T+T +I + C +  +   + L  +++  G
Sbjct: 362 YLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDG 411


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 148/310 (47%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   + 
Sbjct: 145 FNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMH 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 205 ASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD +TY+ +I GLCK+             +   +++M+ 
Sbjct: 265 LAMEIYKQMLSQS------LLPDLVTYNALIYGLCKKG--------DLKQAHDLIDEMS- 309

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              +  ++   + +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 310 ---MXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEG 366

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G  +   +      
Sbjct: 367 RSVDAEK-------MLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHV 419

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 420 PSVVTYNVLM 429



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 137/306 (44%), Gaps = 30/306 (9%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGDI       A  VFD  +     RP V S+N L     +    D    L   ++ +G+
Sbjct: 155 EGDIRV-----AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGV 208

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD YTY++LIN  CK  ++     +   +L     P++VTFT+LI   C    +  A  
Sbjct: 209 HPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAME 268

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           ++ ++       D+ TYN LI GLC+ G    A +L +EM+          +PD ITY+T
Sbjct: 269 IYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXG------LKPDKITYTT 322

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +IDG CKE             +F     M        ++   + +  LI GLC+  +   
Sbjct: 323 LIDGCCKEG--------DLDTAFEHRKMMI----QENIRLDDVAYTALISGLCQEGRSVD 370

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A ++ + +   GL P+  TY ++I   C  G + +         L K +   G  P + T
Sbjct: 371 AEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSK------LLKEMQRDGHVPSVVT 424

Query: 362 YNILIN 367
           YN+L+N
Sbjct: 425 YNVLMN 430



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V ++++L   L K    D    LF  +   GL P+  T+  LI+  CK G V     
Sbjct: 209 HPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAME 268

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L     PD VT+ +LI  LC +  + +A  L  ++ + G + D  TY TLI+G C
Sbjct: 269 IYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCC 328

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 329 KEGDLDTAFEHRKMMIQEN------IRLDDVAYTALISGLCQEGRSVD------------ 370

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +L + + R G +P+VVTYN+L+ 
Sbjct: 371 AEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 430

Query: 327 G 327
           G
Sbjct: 431 G 431



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 32/160 (20%)

Query: 274 FPLVRVQCLCLNFLC---LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
           + L R    C+ F     +++ L K+   K+    ++ +   G   ++  +NIL+   C 
Sbjct: 95  YRLTREHKFCVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCK 154

Query: 331 DGQMDETK----------------HYETV-------------FLLFKRLNSTGLFPDLYT 361
           +G +   +                 Y T+             F L   ++++G+ PD+YT
Sbjct: 155 EGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYT 214

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           Y++LIN  CK  ++     +F  +L     P++VTFT+LI
Sbjct: 215 YSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLI 254



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+ +   P + ++N L   L K         L   +++ GL PD+ TY  LI
Sbjct: 266 AMEIYKQMLS-QSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLI 324

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F     +++     D V +T+LI  LC E R ++A  +  ++   G +
Sbjct: 325 DGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 193 LD-----------------------------------VFTYNTLING 204
            D                                   V TYN L+NG
Sbjct: 385 PDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 152/316 (48%), Gaps = 26/316 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R  V  FN+L     +       + L + +   G  PD  TYN L+N FCK+G +     
Sbjct: 14  RRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKK 73

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++G I      P+ +T+T+LI   C    + +A  ++ ++ V     DV TY  ++NGLC
Sbjct: 74  LMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLC 133

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           ++G    A ++F EM     E GVV  P+  +Y+T+ID L KE   A         +F  
Sbjct: 134 KSGKVEEAKSVFREME----EVGVV--PNRFSYATLIDSLFKEGNVAE--------AFVL 179

Query: 267 LNKMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             +M     +VR +    + +  L+DGL K      A ++FQ L    L+PN VTY+ LI
Sbjct: 180 QGRM-----VVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALI 234

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C  G +++ +      LL + +    +FP++  Y+ +++ + K G ++    +  ++
Sbjct: 235 DGHCKLGDVNKGE------LLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKM 288

Query: 386 LPSCFTPDAVTFTSLI 401
           +     P+   + +LI
Sbjct: 289 VQRNILPNVFVYGTLI 304



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 166/431 (38%), Gaps = 85/431 (19%)

Query: 6   KINGRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDI 65
           K +GRM  AD L +   S                R  + DR +    +    K+  E D 
Sbjct: 343 KRSGRMEEADELFKDMMS----------------RGLLPDRVNYTSMMDGFFKAGKESDA 386

Query: 66  TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
            +I            +  + S   V ++N+L   L K   Y++  S    +   GL PD 
Sbjct: 387 FNIAQE---------MTEKSSGFDVVAYNVLINGLFKLGKYESE-SFHTGMRQLGLAPDS 436

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            T+N +IN +CK G + +   +L  +      P+++T   L++ LCA   I +   L   
Sbjct: 437 ATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLND 496

Query: 186 LRV-----------------------------------FGCELDVFTYNTLINGLCRTGH 210
           + V                                    G +LD+ TYNTLI+  CR G 
Sbjct: 497 MLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGM 556

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A  +F++M       G     D ITY+ +I G C        +      +F+  ++M
Sbjct: 557 IRRATLVFKDM------MGKGILADIITYNALIHGYC--------ISSHLKKAFAVHSQM 602

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                   V+     +  L+ GL     +K A  L   +   GL+PN  TY+IL+ G   
Sbjct: 603 LTEGVSPNVET----YNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGK 658

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G M E         L+  + + G  P   TYN+LI+CF K  ++S    +   +     
Sbjct: 659 IGNMKE------CVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGI 712

Query: 391 TPDAVTFTSLI 401
            P++ T+  LI
Sbjct: 713 PPNSSTYDILI 723



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 143/343 (41%), Gaps = 26/343 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA+ V   M+  R   P V  +  L     K       L LFK +   GL  + +  + 
Sbjct: 279 NEAMDVMRKMVQ-RNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDS 337

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            +N   + GR+     +   ++     PD V +TS++       +  +A  +  ++    
Sbjct: 338 FVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKS 397

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV  YN LINGL + G        +E  +   G   +   PD+ T++T+I+  CKE 
Sbjct: 398 SGFDVVAYNVLINGLFKLGK-------YESESFHTGMRQLGLAPDSATFNTMINAYCKEG 450

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              N L          LN+M  Y   ++   +  N   L+  LC   +++   +L   + 
Sbjct: 451 NLGNALKL--------LNEMKSYG--LKPNSITCNI--LVQRLCAAGEIEKTMDLLNDML 498

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P   T+  ++          +++  + +  +  +L   G+  DL TYN LI+ FC
Sbjct: 499 VMGFHPTPTTHKAVLDA------SSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFC 552

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           ++G +    ++F  ++      D +T+ +LI    I+S  ++ 
Sbjct: 553 RLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKA 595



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 134/315 (42%), Gaps = 25/315 (7%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L ++   +    LFK +   GL PDR  Y  +++ F K G+ S  F +   +       D
Sbjct: 342 LKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFD 401

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V +  LI  L    +  E+ +  T +R  G   D  T+NT+IN  C+ G+   AL L  
Sbjct: 402 VVAYNVLINGLFKLGKY-ESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLN 460

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM +    +G+  +P++IT + ++  LC  AG         M   + +  M F+ P    
Sbjct: 461 EMKS----YGL--KPNSITCNILVQRLCA-AGEIE----KTMDLLNDMLVMGFH-PTPTT 508

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                    ++D   K  +  +   +   L   G+  ++ TYN LI   C  G +     
Sbjct: 509 HK------AVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRAT- 561

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
                L+FK +   G+  D+ TYN LI+ +C    +   F +  ++L    +P+  T+  
Sbjct: 562 -----LVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNI 616

Query: 400 LIKILEINSFFRQVA 414
           L+  L      ++ A
Sbjct: 617 LLGGLSAARLIKEAA 631



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 121/277 (43%), Gaps = 24/277 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P  T+   +    +K++  D +L +  +L   G+  D  TYN LI+ FC++G +    +
Sbjct: 503 HPTPTTHKAVLDASSKSRRADVILHMHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATL 562

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   ++      D +T+ +LI   C  S + +A A+ +++   G   +V TYN L+ GL 
Sbjct: 563 VFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLS 622

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A  L  +M     E G+V  P+A TY  ++ G  K       +   C      
Sbjct: 623 AARLIKEAAGLVNQMK----ERGLV--PNATTYDILVSGHGKIGNMKECVKLYCEMITKG 676

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                 + P  R       +  LI    K  K+  A+EL Q +   G+ PN  TY+ILI 
Sbjct: 677 ------FVPKTRT------YNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILIC 724

Query: 327 G---LCNDGQMDET--KHYET-VFLLFKRLNSTGLFP 357
           G   L    +++++  + Y+     LF+ +N  G  P
Sbjct: 725 GWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIP 761



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 81/218 (37%), Gaps = 64/218 (29%)

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           V  +N LI+G CR G    A+ L E M            PD +TY+T             
Sbjct: 17  VEHFNVLIDGYCRNGEISRAVELLEGMKTEG------PAPDIVTYNT------------- 57

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                                             L++G CKI  L  A++L   +    L
Sbjct: 58  ----------------------------------LMNGFCKIGDLFTAKKLMGEISLVNL 83

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            PNV+TY  LI   C      +++  E    ++  +    L PD+ TY  ++N  CK G+
Sbjct: 84  EPNVITYTTLIDAYC------KSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           V     +F  +      P+  ++ +L     I+S F++
Sbjct: 138 VEEAKSVFREMEEVGVVPNRFSYATL-----IDSLFKE 170


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 152/316 (48%), Gaps = 26/316 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R  V  FN+L     +       + L + +   G  PD  TYN L+N FCK+G +     
Sbjct: 14  RRSVEHFNVLIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKK 73

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++G I      P+ +T+T+LI   C    + +A  ++ ++ V     DV TY  ++NGLC
Sbjct: 74  LMGEISLVNLEPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLC 133

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           ++G    A ++F EM     E GVV  P+  +Y+T+ID L KE   A         +F  
Sbjct: 134 KSGKVEEAKSVFREME----EVGVV--PNRFSYATLIDSLFKEGNVAE--------AFVL 179

Query: 267 LNKMAFYFPLVR-VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             +M     +VR +    + +  L+DGL K      A ++FQ L    L+PN VTY+ LI
Sbjct: 180 QGRM-----VVRGIGFDVVVYTALMDGLFKAGMANNAEDMFQVLLEESLVPNCVTYSALI 234

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            G C  G +++ +      LL + +    +FP++  Y+ +++ + K G ++    +  ++
Sbjct: 235 DGHCKLGDVNKGE------LLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKM 288

Query: 386 LPSCFTPDAVTFTSLI 401
           +     P+   + +LI
Sbjct: 289 VQRNILPNVFVYGTLI 304



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 166/431 (38%), Gaps = 85/431 (19%)

Query: 6   KINGRMRFADRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLKERCKSSGEGDI 65
           K +GRM  AD L +   S                R  + DR +    +    K+  E D 
Sbjct: 343 KRSGRMEEADELFKDMMS----------------RGLLPDRVNYTSMMDGFFKAGKESDA 386

Query: 66  TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125
            +I            +  + S   V ++N+L   L K   Y++  S    +   GL PD 
Sbjct: 387 FNIAQE---------MTEKSSGFDVVAYNVLINGLFKLGKYESE-SFHTGMRQLGLAPDS 436

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
            T+N +IN +CK G + +   +L  +      P+++T   L++ LCA   I +   L   
Sbjct: 437 ATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLLND 496

Query: 186 LRV-----------------------------------FGCELDVFTYNTLINGLCRTGH 210
           + V                                    G +LD+ TYNTLI+  CR G 
Sbjct: 497 MLVMGFHPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGM 556

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A  +F++M       G     D ITY+ +I G C        +      +F+  ++M
Sbjct: 557 IRRATLVFKDM------MGKGILADIITYNALIHGYC--------ISSHLKKAFAVHSQM 602

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                   V+     +  L+ GL     +K A  L   +   GL+PN  TY+IL+ G   
Sbjct: 603 LTEGVSPNVET----YNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGK 658

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G M E         L+  + + G  P   TYN+LI+CF K  ++S    +   +     
Sbjct: 659 IGNMKE------CVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGI 712

Query: 391 TPDAVTFTSLI 401
            P++ T+  LI
Sbjct: 713 PPNSSTYDILI 723



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 142/343 (41%), Gaps = 26/343 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA+ V   M+  R   P V  +  L     K       L LFK +   GL  + +  + 
Sbjct: 279 NEAMDVMRKMVQ-RNILPNVFVYGTLIDGYFKADQRGIALDLFKEMKSRGLEENNFVIDS 337

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            +N   + GR+     +   ++     PD V +TS++       +  +A  +  ++    
Sbjct: 338 FVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKS 397

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV  YN LINGL + G        +E  +   G   +   PD+ T++T+I+  CKE 
Sbjct: 398 SGFDVVAYNVLINGLFKLGK-------YESESFHTGMRQLGLAPDSATFNTMINAYCKEG 450

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              N L          LN+M  Y   ++   +  N   L+  LC   +++   +L   + 
Sbjct: 451 NLGNALKL--------LNEMKSYG--LKPNSITCNI--LVQRLCAAGEIEKTMDLLNDML 498

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P   T+  ++          +++  + +     +L   G+  DL TYN LI+ FC
Sbjct: 499 VMGFHPTPTTHKAVLDA------SSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFC 552

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           ++G +    ++F  ++      D +T+ +LI    I+S  ++ 
Sbjct: 553 RLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKA 595



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 133/315 (42%), Gaps = 25/315 (7%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L ++   +    LFK +   GL PDR  Y  +++ F K G+ S  F +   +       D
Sbjct: 342 LKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFD 401

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V +  LI  L    +  E+ +  T +R  G   D  T+NT+IN  C+ G+   AL L  
Sbjct: 402 VVAYNVLINGLFKLGKY-ESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLN 460

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM +    +G+  +P++IT + ++  LC  AG         M   + +  M F+ P    
Sbjct: 461 EMKS----YGL--KPNSITCNILVQRLCA-AGEIE----KTMDLLNDMLVMGFH-PTPTT 508

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                    ++D   K  +  +       L   G+  ++ TYN LI   C  G +     
Sbjct: 509 HK------AVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRAT- 561

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
                L+FK +   G+  D+ TYN LI+ +C    +   F +  ++L    +P+  T+  
Sbjct: 562 -----LVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNI 616

Query: 400 LIKILEINSFFRQVA 414
           L+  L      ++ A
Sbjct: 617 LLGGLSAARLIKEAA 631



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 120/277 (43%), Gaps = 24/277 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P  T+   +    +K++  D +L    +L   G+  D  TYN LI+ FC++G +    +
Sbjct: 503 HPTPTTHKAVLDASSKSRRADVILHXHDQLVGMGVKLDLSTYNTLISTFCRLGMIRRATL 562

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   ++      D +T+ +LI   C  S + +A A+ +++   G   +V TYN L+ GL 
Sbjct: 563 VFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEGVSPNVETYNILLGGLS 622

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A  L  +M     E G+V  P+A TY  ++ G  K       +   C      
Sbjct: 623 AARLIKEAAGLVNQMK----ERGLV--PNATTYDILVSGHGKIGNMKECVKLYCEMITKG 676

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                 + P  R       +  LI    K  K+  A+EL Q +   G+ PN  TY+ILI 
Sbjct: 677 ------FVPKTRT------YNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILIC 724

Query: 327 G---LCNDGQMDET--KHYET-VFLLFKRLNSTGLFP 357
           G   L    +++++  + Y+     LF+ +N  G  P
Sbjct: 725 GWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIP 761



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 81/218 (37%), Gaps = 64/218 (29%)

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           V  +N LI+G CR G    A+ L E M            PD +TY+T             
Sbjct: 17  VEHFNVLIDGYCRNGEISRAVELLEGMKTEG------PAPDIVTYNT------------- 57

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                                             L++G CKI  L  A++L   +    L
Sbjct: 58  ----------------------------------LMNGFCKIGDLFTAKKLMGEISLVNL 83

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            PNV+TY  LI   C      +++  E    ++  +    L PD+ TY  ++N  CK G+
Sbjct: 84  EPNVITYTTLIDAYC------KSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
           V     +F  +      P+  ++ +L     I+S F++
Sbjct: 138 VEEAKSVFREMEEVGVVPNRFSYATL-----IDSLFKE 170


>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like, partial [Glycine max]
          Length = 594

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 145/333 (43%), Gaps = 24/333 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           E   + + M +     P   + NI+     K    +       ++  +G+ PD +TYN +
Sbjct: 190 EGFRLLEEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTM 249

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN FCK G++   F ++  + R    PD  T  +++  LC E +  EA  L  K R  G 
Sbjct: 250 INGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGY 309

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            LD  TY TLI G  +      AL L+EEM     + G+V  P  ++Y+ +I GLC    
Sbjct: 310 ILDEVTYGTLIMGYFKGKQEDKALKLWEEMK----KRGIV--PSVVSYNPLIRGLC---- 359

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
               L      +   LN++     LV  +  C     +I G C    +  A +    +  
Sbjct: 360 ----LSGKTDQAVDKLNEL-LEKGLVPDEVSC---NIIIHGYCWEGMVDKAFQFHNKMVG 411

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
               P++ T NIL+RGLC    +      E  F LF    S     D+ TYN +I+  CK
Sbjct: 412 NSFKPDIFTRNILLRGLCRVDML------EKAFKLFNSWISKQNSVDVVTYNTMISYLCK 465

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            GR+   F +   +    F PD  T+ ++++ L
Sbjct: 466 EGRLDEAFDLMTDMEVKKFEPDQYTYNAIVRAL 498



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 142/319 (44%), Gaps = 31/319 (9%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++N L   L      D  + +   +    L PD  TYN LI+   K    + GF +L 
Sbjct: 137 VWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLLE 196

Query: 150 RIL-RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
            +  R    P+AVT   ++K    E +I EA+    K+   G   D FTYNT+ING C+ 
Sbjct: 197 EMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCKA 256

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
           G    A  + +EMA          +PD  T +T++  LC E         +  A      
Sbjct: 257 GKLGEAFRMMDEMARKG------LKPDICTLNTMLHTLCMEKKPEEAYELTVKA-----R 305

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
           K  +    V        +  LI G  K  +   A +L++ + + G++P+VV+YN LIRGL
Sbjct: 306 KRGYILDEV-------TYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGL 358

Query: 329 CNDGQMDETKHYETVFLLFKRLN---STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           C  G+ D+            +LN     GL PD  + NI+I+ +C  G V   F    ++
Sbjct: 359 CLSGKTDQA---------VDKLNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKM 409

Query: 386 LPSCFTPDAVTFTSLIKIL 404
           + + F PD  T   L++ L
Sbjct: 410 VGNSFKPDIFTRNILLRGL 428



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 150/336 (44%), Gaps = 28/336 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILF-GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +EA+ V D M +++   P V ++N L  GC       +    L +  +  G+ P+  T+N
Sbjct: 154 DEAIRVRDEMESLKLI-PDVVTYNTLIDGCFKWRGSTEGFRLLEEMKSRGGVEPNAVTHN 212

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           I++  F K G+++     + +++ S  +PD  T+ ++I   C   ++ EA  +  ++   
Sbjct: 213 IMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARK 272

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G + D+ T NT+++ LC       A     E+     + G +   D +TY T+I G  K 
Sbjct: 273 GLKPDICTLNTMLHTLCMEKKPEEAY----ELTVKARKRGYIL--DEVTYGTLIMGYFKG 326

Query: 250 AGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                 L  +  M     +  +  Y PL+R             GLC   K   A +    
Sbjct: 327 KQEDKALKLWEEMKKRGIVPSVVSYNPLIR-------------GLCLSGKTDQAVDKLNE 373

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           L   GL+P+ V+ NI+I G C +G +D+       F    ++      PD++T NIL+  
Sbjct: 374 LLEKGLVPDEVSCNIIIHGYCWEGMVDK------AFQFHNKMVGNSFKPDIFTRNILLRG 427

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            C++  +   F +F   +    + D VT+ ++I  L
Sbjct: 428 LCRVDMLEKAFKLFNSWISKQNSVDVVTYNTMISYL 463



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 108/267 (40%), Gaps = 46/267 (17%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+ +L+K LC E +I EA  +  ++       DV TYNTLI+G  +   +     L 
Sbjct: 136 DVWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLL 195

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
           EEM +  G      EP+A+T++ ++    KE G  N        +  A+ KM        
Sbjct: 196 EEMKSRGG-----VEPNAVTHNIMVKWFGKE-GKIN-------EASDAVVKMV----ESG 238

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET- 337
           V   C  +  +I+G CK  KL  A  +   + R GL P++ T N ++  LC + + +E  
Sbjct: 239 VSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAY 298

Query: 338 ----------------------------KHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
                                       K  +    L++ +   G+ P + +YN LI   
Sbjct: 299 ELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGL 358

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVT 396
           C  G+          +L     PD V+
Sbjct: 359 CLSGKTDQAVDKLNELLEKGLVPDEVS 385



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 58/212 (27%)

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
           +DV+TYNTL+ GLC  G    A+ + +EM +      +   PD +TY+T+IDG  K  GS
Sbjct: 135 IDVWTYNTLVKGLCDEGKIDEAIRVRDEMES------LKLIPDVVTYNTLIDGCFKWRGS 188

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
               GF  +    +                                            R 
Sbjct: 189 TE--GFRLLEEMKS--------------------------------------------RG 202

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+ PN VT+NI+++    +G+++E    + V     ++  +G+ PD +TYN +IN FCK 
Sbjct: 203 GVEPNAVTHNIMVKWFGKEGKINEAS--DAVV----KMVESGVSPDCFTYNTMINGFCKA 256

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           G++   F +   +      PD  T  +++  L
Sbjct: 257 GKLGEAFRMMDEMARKGLKPDICTLNTMLHTL 288



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 67/169 (39%), Gaps = 6/169 (3%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   S NI+          D       ++      PD +T NIL+   C++  +   F +
Sbjct: 381 PDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPDIFTRNILLRGLCRVDMLEKAFKL 440

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
               +    + D VT+ ++I  LC E R+ EA  L T + V   E D +TYN ++  L  
Sbjct: 441 FNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTYNAIVRALTH 500

Query: 208 TGHTIVA---LNLFEEMANGNGEFGVVCEPDA---ITYSTIIDGLCKEA 250
            G T  A   ++   E            E DA   I YS  I  LC + 
Sbjct: 501 AGRTEEAEKFMSKLSETGQAVKTHDTSQELDASSDIMYSQQISDLCTQG 549



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 18/178 (10%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + + NIL   L +    +    LF          D  TYN +I+  CK GR+   F 
Sbjct: 415 KPDIFTRNILLRGLCRVDMLEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFD 474

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC---------ELDVFT 197
           ++  +    F PD  T+ ++++ L    R  EA    +KL   G          ELD  +
Sbjct: 475 LMTDMEVKKFEPDQYTYNAIVRALTHAGRTEEAEKFMSKLSETGQAVKTHDTSQELDASS 534

Query: 198 ---YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
              Y+  I+ LC  G    A+ LF+E    + + GV    +  TY  ++DG  K   S
Sbjct: 535 DIMYSQQISDLCTQGKYKEAMKLFQE----SEQKGVSL--NKYTYIKLMDGFLKRRKS 586



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 12/139 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL- 148
           V ++N +   L K    D    L   + +    PD+YTYN ++      GR       + 
Sbjct: 453 VVTYNTMISYLCKEGRLDEAFDLMTDMEVKKFEPDQYTYNAIVRALTHAGRTEEAEKFMS 512

Query: 149 -----GRILRSCFTP---DA---VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFT 197
                G+ +++  T    DA   + ++  I DLC + +  EA  LF +    G  L+ +T
Sbjct: 513 KLSETGQAVKTHDTSQELDASSDIMYSQQISDLCTQGKYKEAMKLFQESEQKGVSLNKYT 572

Query: 198 YNTLINGLCRTGHTIVALN 216
           Y  L++G  +   +I  ++
Sbjct: 573 YIKLMDGFLKRRKSISKVD 591


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 144/310 (46%), Gaps = 26/310 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K  +     S+F  +   GL P   +YN L++ + ++G +  GF +   + 
Sbjct: 128 FNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMH 187

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC E ++ EA  LF ++ V G      T+ TLI+G C+ G   
Sbjct: 188 ASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVD 247

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+                  + +  
Sbjct: 248 LAMEIYKQMLSQS------LLPDLITYNTLIYGLCKK------------GBLKQAHVLIX 289

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
              L   +   + +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 290 EMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEG 349

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S G  PD  TY ++IN FCK G V +G  +   +      
Sbjct: 350 RSVDAEK-------MLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHV 402

Query: 392 PDAVTFTSLI 401
           P  VT+  L+
Sbjct: 403 PSVVTYNVLM 412



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 131/295 (44%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   ++ +G+ PD YTY++LI
Sbjct: 144 AQSVFD-AITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLI 202

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P  VTFT+LI   C   R+  A  ++ ++      
Sbjct: 203 NGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 262

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A  L  EM+          +PD ITY+T+IDG CKE   
Sbjct: 263 PDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKG------XKPDKITYTTLIDGCCKEG-- 314

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 315 ------DLDTAFEHRKRMI----QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 364

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           G  P+  TY ++I   C  G +       T   L K +   G  P + TYN+L+N
Sbjct: 365 GXKPDTRTYTMIINEFCKKGDV------WTGSKLLKEMQRDGHVPSVVTYNVLMN 413



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 132/304 (43%), Gaps = 28/304 (9%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L K K++  V   ++ +   G     Y +NIL++ FCK G +     V   I +    P 
Sbjct: 100 LMKLKYFKLVWGFYQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPS 159

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V++ +L+        + E   L + +   G + DV+TY+ LINGLC+      A  LF+
Sbjct: 160 VVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFD 219

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM       G+V  P  +T++T+IDG CK  G  +               M  Y  ++  
Sbjct: 220 EMLV----XGLV--PXGVTFTTLIDGHCKN-GRVDL-------------AMEIYKQMLSQ 259

Query: 280 QCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
             L   + +  LI GLCK   LK A  L   +   G  P+ +TY  LI G C +G +D  
Sbjct: 260 SLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLD-- 317

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
               T F   KR+    +  D   Y  LI+  C+ GR      +   +L     PD  T+
Sbjct: 318 ----TAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTY 373

Query: 398 TSLI 401
           T +I
Sbjct: 374 TMII 377



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  + + GL P   T+  LI+  CK GRV     
Sbjct: 192 QPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAME 251

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L     PD +T+ +LI  LC +  + +A  L  ++ + G + D  TY TLI+G C
Sbjct: 252 IYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCC 311

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 312 KEGDLDTAFEHRKRMIQEN------IRLDDVAYTALISGLCQEGRSVD------------ 353

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V  +     +  +I+  CK   +    +L + + R G +P+VVTYN+L+ 
Sbjct: 354 AEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMN 413

Query: 327 G 327
           G
Sbjct: 414 G 414



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++++  +P   ++  L     K    DT     KR+    +  D   Y  LI+  C+ GR
Sbjct: 291 MSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 350

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
                 +L  +L     PD  T+T +I + C +  +   + L  +++  G    V TYN 
Sbjct: 351 SVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNV 410

Query: 201 LING 204
           L+NG
Sbjct: 411 LMNG 414



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 29/142 (20%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK---------- 338
           +++ L K+   K+    +Q +   G   ++  +NIL+   C +G +   +          
Sbjct: 96  VLEHLMKLKYFKLVWGFYQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWG 155

Query: 339 ------HYETV-------------FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                  Y T+             F L   ++++G+ PD+YTY++LIN  CK  ++    
Sbjct: 156 LRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEAN 215

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  +L     P  VTFT+LI
Sbjct: 216 ELFDEMLVXGLVPXGVTFTTLI 237


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 157/386 (40%), Gaps = 58/386 (15%)

Query: 79  YMLNMRPSR----PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           ++L+  P R    P   S+N +   LA+   +   L L++R+    + P  +T+ +    
Sbjct: 130 HLLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARA 189

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            C++GR      +L  + R    PDAV + ++I  L A+  + EAA L  ++ + GC  D
Sbjct: 190 LCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAAD 249

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGS 252
           V T+N ++ GLC  GH   A  L + M          C P  +TY  ++ GLC  ++A  
Sbjct: 250 VNTFNDVVLGLCGLGHVREAARLVDRMMMHG------CTPSVVTYGFLLRGLCRTRQADE 303

Query: 253 A---------------NFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCK 295
           A               N +   C+A          Y  +    C      +  L+ GLCK
Sbjct: 304 AYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCK 363

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK----------------- 338
           + +   A  +   +   G  PN+VTY+ L+   C +G  D+ +                 
Sbjct: 364 LGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQG 423

Query: 339 ------------HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
                         +    L + + S G  PD+ TYN +I   C   ++     IFG +L
Sbjct: 424 YNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLL 483

Query: 387 PSCFTPDAVTFTSLIKILEINSFFRQ 412
                 + +T+ +LI  L  +  +++
Sbjct: 484 EEGVVANGITYNTLIHALLHSGRWQE 509



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 26/323 (8%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  +   P V ++NIL   L K     + + +   +   G  P+  TY+ L++ FC+ G
Sbjct: 341 MMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNG 400

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
                  +L ++    F+ ++  +  +I  L  + ++ EA  L  +++  GC+ D+ TYN
Sbjct: 401 MWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYN 460

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           T+I  LC       A ++F  +     E GVV   + ITY+T+I  L         L  +
Sbjct: 461 TIIYHLCNNDQMDEAEHIFGNLL----EEGVVA--NGITYNTLIHALLHSGRWQEGLRLA 514

Query: 260 CMASFSALNKMAFYF-PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318
                   N+M  +  PL  V     ++  LI  LCK   +  +  L + +   G+ PN 
Sbjct: 515 --------NEMVLHGCPLDVV-----SYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNN 561

Query: 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
            +YN+LI  LC  G++ +         L K + + GL PD+ TYN LIN  CK+G   + 
Sbjct: 562 FSYNMLINELCKAGKVRDA------LELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAA 615

Query: 379 FVIFGRILPSCFTPDAVTFTSLI 401
             +  ++      PD VT+  LI
Sbjct: 616 LNLLEKLPNENVHPDIVTYNILI 638



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 142/326 (43%), Gaps = 31/326 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +++ L     +   +D   ++  +++  G   +   YN +I    K G++     +
Sbjct: 384 PNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRL 443

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +      PD  T+ ++I  LC   ++ EA  +F  L   G   +  TYNTLI+ L  
Sbjct: 444 VQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLH 503

Query: 208 TGHTIVALNLFEEMA-NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +G     L L  EM  +G       C  D ++Y+ +I  LCKE      +          
Sbjct: 504 SGRWQEGLRLANEMVLHG-------CPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKG 556

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +    F + +            LI+ LCK  K++ A EL + +   GL P++VTYN LI 
Sbjct: 557 IKPNNFSYNM------------LINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLIN 604

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC  G             L ++L +  + PD+ TYNILI+  CK+  +    ++  + +
Sbjct: 605 GLCKVGWT------HAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAV 658

Query: 387 PSCFTPDAVTFTSLIKILEINSFFRQ 412
                P+  T+  +++     +F RQ
Sbjct: 659 SGGIVPNERTWGMMVQ-----NFVRQ 679



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 119/285 (41%), Gaps = 59/285 (20%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++N +   L      D    +F  L   G+  +  TYN LI+     GR   G  
Sbjct: 453 KPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLR 512

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   ++      D V++  LIK LC E  +  +  L  ++   G + + F+YN LIN LC
Sbjct: 513 LANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELC 572

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    AL L +EM N          PD +TY+T+I+GLCK       +G+    + +A
Sbjct: 573 KAGKVRDALELSKEMLNQG------LTPDIVTYNTLINGLCK-------VGW----THAA 615

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           LN                                    L + LP   + P++VTYNILI 
Sbjct: 616 LN------------------------------------LLEKLPNENVHPDIVTYNILIS 639

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
             C    +D+        +L  +  S G+ P+  T+ +++  F +
Sbjct: 640 WHCKVRLLDDAS------MLLDKAVSGGIVPNERTWGMMVQNFVR 678



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 9/163 (5%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  S    +K  CK   EG++     + ++ + + M+  +  +P   S+N+L   L K  
Sbjct: 525 DVVSYNGLIKALCK---EGNV-----DRSMMLLEEMMT-KGIKPNNFSYNMLINELCKAG 575

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
                L L K +   GL PD  TYN LIN  CK+G       +L ++      PD VT+ 
Sbjct: 576 KVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYN 635

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            LI   C    + +A+ L  K    G   +  T+  ++    R
Sbjct: 636 ILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMMVQNFVR 678


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 138/314 (43%), Gaps = 29/314 (9%)

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           CL     Y+   S+ + +   G  PD  TY+ ++   C   ++   F++   + R     
Sbjct: 457 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVA 516

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D  T+T ++   C    I +A   F ++R  GC  +V TY  LI+   +      A  LF
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYF--- 274
           E M +        C P+ +TYS +IDG CK          F  M     +  +  YF   
Sbjct: 577 ETMLSEG------CLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQY 630

Query: 275 -------PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                  P V +      +  L+DG CK+ +++ AR+L  ++   G  PN + Y+ LI G
Sbjct: 631 DDDNSERPNVVI------YGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDG 684

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G++DE +  +        ++  G    LYTY+ LI+ + K+ R      +  ++L 
Sbjct: 685 LCKVGKLDEAQEVKA------EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLE 738

Query: 388 SCFTPDAVTFTSLI 401
           +   P+ V +T +I
Sbjct: 739 NSCAPNVVIYTEMI 752



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 140/358 (39%), Gaps = 72/358 (20%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP  +++N L     K    D+   + + ++L  L  D +T        CK+G+      
Sbjct: 232 RPSRSTYNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAYSLCKVGKWREALT 291

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY-------- 198
           ++       F PD V +T LI  LC  S   EA     ++R   C  +V TY        
Sbjct: 292 LMET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCL 348

Query: 199 ---------------------------NTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
                                      N+L++  C +G    A  L ++M          
Sbjct: 349 NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGH----- 403

Query: 232 CEPDAITYSTIIDGLC--KEAGSANFLGFS------CMASFSALNKMAFYFPLVRVQCLC 283
             P  + Y+ +I  +C  K++ S + L  +       +A+   LNK              
Sbjct: 404 -TPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNK-------------- 448

Query: 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343
           +N       LC   K + A  + + +   G +P+  TY+ ++  LCN  +M      E  
Sbjct: 449 INVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKM------ELA 502

Query: 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           FLLF+ +   GL  D+YTY I+++ FCK G +      F  +     TP+ VT+T+LI
Sbjct: 503 FLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALI 560



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 139/328 (42%), Gaps = 36/328 (10%)

Query: 76  VFDYMLNMRPSR--PPVTSFNILF-GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
             D++  MR +   P V +++ L  GCL K K       +   + + G +P    +N L+
Sbjct: 321 AMDFLNRMRATSCLPNVVTYSTLLCGCLNK-KQLGRCKRVLNMMMMEGCYPSPKIFNSLV 379

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES-----RIME-AAALFTKL 186
           + +C  G  S+ + +L ++++   TP  V +  LI  +C +       ++E A   ++++
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEM 439

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G  L+    ++    LC  G    A ++  EM  G G       PD  TYS ++  L
Sbjct: 440 LATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI-GQGFI-----PDTSTYSKVLGYL 493

Query: 247 CKEAG-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           C  +     FL F  M     +  +  Y               ++D  CK   ++ AR+ 
Sbjct: 494 CNASKMELAFLLFEEMKRGGLVADVYTY-------------TIMVDSFCKAGLIEQARKW 540

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F  +   G  PNVVTY  LI       ++           LF+ + S G  P++ TY+ L
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANE------LFETMLSEGCLPNIVTYSAL 594

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPD 393
           I+  CK G++     IF R+  S   PD
Sbjct: 595 IDGHCKAGQMEKACQIFERMCGSKDVPD 622



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 140/340 (41%), Gaps = 40/340 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EA  + D M +M    P    ++ L   L K    D    +   ++  G     YTY+ 
Sbjct: 657 EEARKLLDAM-SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSS 715

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ + K+ R      VL ++L +   P+ V +T +I  LC   +  EA  L   +   G
Sbjct: 716 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 775

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C+ +V TY  +I+G  R G     L L E M    G  GV   P+ +TY  +ID  CK  
Sbjct: 776 CQPNVVTYTAMIDGFGRIGKIETCLELLERM----GSKGVA--PNYVTYRVLIDHCCKNG 829

Query: 251 G---SANFLGFSCMASFSALNKMAFYFPLVR------VQCLCL--------------NFL 287
               + N L    M         A Y  ++       ++ L L               + 
Sbjct: 830 ALDVAHNLL--EEMKQTHWPTHAAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYR 887

Query: 288 CLIDGLCKISKLKIARELFQSLP--RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
            L+D L K  +L++A  L + +    A L+    TYN LI  LC   ++D+       F 
Sbjct: 888 LLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKA------FR 941

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           LF  ++  G+ P++ T+  LI    +  ++S   ++   I
Sbjct: 942 LFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEALLLLDFI 981



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 132/352 (37%), Gaps = 47/352 (13%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
            RP V  +  L     K    +    L   +++ G  P++  Y+ LI+  CK+G++    
Sbjct: 636 ERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ 695

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            V   +    F     T++SLI       R   A+ + +K+    C  +V  Y  +I+GL
Sbjct: 696 EVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGL 755

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G T  A  L + M          C+P+ +TY+ +IDG  +  G       +C+    
Sbjct: 756 CKVGKTDEAYKLMQMMEEKG------CQPNVVTYTAMIDGFGR-IGKIE----TCLELLE 804

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            +         V        +  LID  CK   L +A  L + + +     +   Y  +I
Sbjct: 805 RMGSKGVAPNYV-------TYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVI 857

Query: 326 RGLCND-----GQMDETKHYETV-FLLFKRLN-----------------------STGLF 356
            G   +     G +DE    +T  FL   RL                        S  L 
Sbjct: 858 EGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLV 917

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
               TYN LI   C   +V   F +F  +      P+  TF SLIK L  NS
Sbjct: 918 DYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNS 969



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 115/302 (38%), Gaps = 38/302 (12%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N+L+  +C+ G  S     LGR+    F P   T+  LI+       +  A+ +  ++ +
Sbjct: 204 NVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSL 263

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
               +D FT       LC+ G    AL L E       E  V   PD + Y+ +I GLC+
Sbjct: 264 ANLRMDGFTLRCYAYSLCKVGKWREALTLMET------ENFV---PDTVFYTKLISGLCE 314

Query: 249 EAGSANFLGF-SCMASFSALNKMAFYFPLVRVQCLCLN---------------------- 285
            +     + F + M + S L  +  Y  L+   C CLN                      
Sbjct: 315 ASLFEEAMDFLNRMRATSCLPNVVTYSTLL---CGCLNKKQLGRCKRVLNMMMMEGCYPS 371

Query: 286 ---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
              F  L+   C       A +L + + + G  P  V YNILI  +C D         E 
Sbjct: 372 PKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLEL 431

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
               +  + +TG+  +    +    C C  G+    F +   ++   F PD  T++ ++ 
Sbjct: 432 AEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLG 491

Query: 403 IL 404
            L
Sbjct: 492 YL 493



 Score = 38.5 bits (88), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL--TGLFPDRYTYN 129
           E+L + D  +    + P ++ + +L   L K +  +  L L + +      L     TYN
Sbjct: 866 ESLGLLDE-IGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYN 924

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI   C   +V   F +   + +    P+  TF SLIK L   S+I EA  L   +   
Sbjct: 925 SLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEALLLLDFISHM 984

Query: 190 GCEL 193
            C L
Sbjct: 985 VCPL 988


>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
 gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
          Length = 1090

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 151/324 (46%), Gaps = 33/324 (10%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            ++N +     K   +   L + + +    +  D YTYNI+I+  C++ R +  F++L R
Sbjct: 190 ATYNTILHWYVKKGRFKAALCVLEDMERDSIQADIYTYNIMIDKLCRIKRSARAFLLLKR 249

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           + +   TPD  T+ +LI     E +I  A  +F  +        V TY T+I+G CR   
Sbjct: 250 MRKDDLTPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRNRR 309

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALN 268
              AL++  EM       GV+  P  +TYS +++G CK +  G A  L     +    +N
Sbjct: 310 IDKALSVLSEMEIT----GVM--PSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITIN 363

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
           K            +C     LIDG C++ ++  A+++ +S+   G+ P+VVTY+ LI G+
Sbjct: 364 KT-----------MC---TILIDGFCQVGEISKAKQILKSMLEDGIDPDVVTYSALINGM 409

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C   +M ETK       +  R+  +G+ P+   Y  LI  +CK G V      F  I   
Sbjct: 410 CRMAKMHETKE------ILSRMQKSGILPNDVLYTTLICYYCKAGYVKVALKHFVDIYRR 463

Query: 389 CFTPDAVTFTSLIKILEINSFFRQ 412
               + V   +L++     +F+R+
Sbjct: 464 GLVANPVIHNALLR-----AFYRE 482



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 160/361 (44%), Gaps = 52/361 (14%)

Query: 73  ALCVFDYMLNMRPS-RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           ALCV + M   R S +  + ++NI+   L + K       L KR+    L PD  TYN L
Sbjct: 208 ALCVLEDM--ERDSIQADIYTYNIMIDKLCRIKRSARAFLLLKRMRKDDLTPDECTYNTL 265

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           IN F   G+++H   V   +LR    P   T+T++I   C   RI +A ++ +++ + G 
Sbjct: 266 INGFFGEGKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRNRRIDKALSVLSEMEITGV 325

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMA---------------NGNGEFGVVC---- 232
                TY+ L+NG C+      AL+L  ++                +G  + G +     
Sbjct: 326 MPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILIDGFCQVGEISKAKQ 385

Query: 233 ----------EPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQC 281
                     +PD +TYS +I+G+C+ A         S M     L     Y  L+   C
Sbjct: 386 ILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLI---C 442

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
                       CK   +K+A + F  + R GL+ N V +N L+R    +G + E +H+ 
Sbjct: 443 Y----------YCKAGYVKVALKHFVDIYRRGLVANPVIHNALLRAFYREGMITEAEHFR 492

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                  R+N +  F  + ++N +I+ +C  G++   F ++  ++    +P+  T+ +L+
Sbjct: 493 Q---YMSRMNIS--FNSV-SFNCIIDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLL 546

Query: 402 K 402
           +
Sbjct: 547 R 547



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 151/336 (44%), Gaps = 27/336 (8%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +++L ++ YM+  +  RP   ++ +L   L++    D  +   +++ L G+FPD+  ++I
Sbjct: 732  SKSLYLYKYMVR-KGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDKLVFDI 790

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            LI  F +  ++ +   +   +     +P + TF+++I  L  ++ + ++  +  ++   G
Sbjct: 791  LITSFSEKSKMHNALRLFNCMKCLHLSPSSKTFSAMINGLIRKNYLDQSHEVLHEMLQVG 850

Query: 191  CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             + +   Y  L+N  CR G    A  L EEM       G+V  P  +  S+II GLC+  
Sbjct: 851  LQPNHTHYIALVNAKCRVGEIDRAFRLKEEMK----AIGIV--PAEVAESSIIRGLCRCG 904

Query: 251  G-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                  + FS M     +  +A              F  L+  LCK SK+  A  L + +
Sbjct: 905  KLEEAVIVFSNMMRSGMVPTVA-------------TFTTLMHSLCKESKIADALHLKRLM 951

Query: 310  PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
                L  +VV+YN+LI GLC D      KH      L+  + S GL+P++ TY  L    
Sbjct: 952  ELCRLKVDVVSYNVLITGLCKD------KHISDALDLYGEMKSKGLWPNVTTYITLTGAM 1005

Query: 370  CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
               GR+ +G  +   I      P      +L + +E
Sbjct: 1006 YSTGRMQNGEELLEDIEERGLIPAFKQLENLERRME 1041



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 153/373 (41%), Gaps = 59/373 (15%)

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
           PS     +FN L   + K    D  L + +++      PD +TY IL++ FC+ G++   
Sbjct: 569 PSAVDEKTFNALLLGICKYGTLDEALDICEKMVKNNCLPDIHTYTILLSGFCRKGKILPA 628

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV-FGCELDVFTYNTLIN 203
            V+L  +L     PD V +T L+  L  E ++  A+ +F ++    G   D   YN+L+N
Sbjct: 629 LVMLQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLMN 688

Query: 204 GLCRTGHTIVALNLFEEMANGN------------------GEFGVV-----------CEP 234
           G  + G+      +  +M                      G+F                P
Sbjct: 689 GYLKGGNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRP 748

Query: 235 DAITYSTIIDGLCK----------------EAGSANFLGFSCM-ASFSALNKMAFYFPLV 277
           D +TY  +I GL +                E    + L F  +  SFS  +KM     L 
Sbjct: 749 DNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDKLVFDILITSFSEKSKMHNALRLF 808

Query: 278 R-VQCLCLN-----FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
             ++CL L+     F  +I+GL + + L  + E+   + + GL PN   Y  L+   C  
Sbjct: 809 NCMKCLHLSPSSKTFSAMINGLIRKNYLDQSHEVLHEMLQVGLQPNHTHYIALVNAKCRV 868

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           G++D        F L + + + G+ P     + +I   C+ G++    ++F  ++ S   
Sbjct: 869 GEIDRA------FRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVIVFSNMMRSGMV 922

Query: 392 PDAVTFTSLIKIL 404
           P   TFT+L+  L
Sbjct: 923 PTVATFTTLMHSL 935



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 137/315 (43%), Gaps = 39/315 (12%)

Query: 112 LFKRLNLTGLFP-DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
           LF R +L   FP D  T NIL+N  C  G       +L + ++SC   ++ T+ +++   
Sbjct: 141 LFLRESLARKFPLDVTTCNILLNSLCTNGEFRKAEDMLQK-MKSCCLSNSATYNTILHWY 199

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230
             + R   A  +   +     + D++TYN +I+ LCR   +  A  L + M   +     
Sbjct: 200 VKKGRFKAALCVLEDMERDSIQADIYTYNIMIDKLCRIKRSARAFLLLKRMRKDD----- 254

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLG--FSCMASFSALNKMAFYFPLVRVQCLC----- 283
              PD  TY+T+I+G   E G  N     F+ M   + +  +A Y  ++   C       
Sbjct: 255 -LTPDECTYNTLINGFFGE-GKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRNRRIDK 312

Query: 284 -----------------LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                            L +  L++G CK+S L  A +L   L   G+  N     ILI 
Sbjct: 313 ALSVLSEMEITGVMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILID 372

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C  G++ + K       + K +   G+ PD+ TY+ LIN  C++ ++     I  R+ 
Sbjct: 373 GFCQVGEISKAKQ------ILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQ 426

Query: 387 PSCFTPDAVTFTSLI 401
            S   P+ V +T+LI
Sbjct: 427 KSGILPNDVLYTTLI 441



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 142/305 (46%), Gaps = 31/305 (10%)

Query: 98  GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 157
           G + + +H+   +S   R+N++    +  ++N +I+ +C  G++   F V   ++R   +
Sbjct: 483 GMITEAEHFRQYMS---RMNISF---NSVSFNCIIDSYCHRGKIVEAFSVYDDMVRYGHS 536

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           P+  T+ +L++ LC    +++A      L      +D  T+N L+ G+C+ G    AL++
Sbjct: 537 PNVCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAVDEKTFNALLLGICKYGTLDEALDI 596

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
            E+M   N      C PD  TY+ ++ G C++           + +   L  M     + 
Sbjct: 597 CEKMVKNN------CLPDIHTYTILLSGFCRKG--------KILPALVMLQMMLEKGVVP 642

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLP-RAGLMPNVVTYNILIRGLCNDGQMDE 336
                 + + CL++GL    ++K A  +FQ +  + GL  + + YN L+ G    G ++ 
Sbjct: 643 DT----VAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKGGNVNT 698

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
            K       +   +    ++P+  +YNIL++ + K G+ S    ++  ++     PD VT
Sbjct: 699 IKR------MMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVT 752

Query: 397 FTSLI 401
           +  LI
Sbjct: 753 YRLLI 757



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 149/343 (43%), Gaps = 28/343 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS-LFKRLNLTGLFPDRYTYNI 130
           EA  V+D M+    S P V ++  L   L +  H       +F  L++     D  T+N 
Sbjct: 522 EAFSVYDDMVRYGHS-PNVCTYQNLLRGLCQGGHLVQAKQFMFCLLDIPSAV-DEKTFNA 579

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L+   CK G +     +  +++++   PD  T+T L+   C + +I+ A  +   +   G
Sbjct: 580 LLLGICKYGTLDEALDICEKMVKNNCLPDIHTYTILLSGFCRKGKILPALVMLQMMLEKG 639

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D   Y  L+NGL   G    A  +F+E+    G +      D I Y+++++G  K  
Sbjct: 640 VVPDTVAYTCLLNGLINEGQVKAASYVFQEIICKEGLYA-----DCIAYNSLMNGYLK-G 693

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G+ N            + +M        V     ++  L+ G  K  +   +  L++ + 
Sbjct: 694 GNVN-----------TIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMV 742

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMD-ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
           R G+ P+ VTY +LI GL   G +D   K  E + L        G+FPD   ++ILI  F
Sbjct: 743 RKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVL-------EGIFPDKLVFDILITSF 795

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            +  ++ +   +F  +     +P + TF+++I  L   ++  Q
Sbjct: 796 SEKSKMHNALRLFNCMKCLHLSPSSKTFSAMINGLIRKNYLDQ 838



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 108/264 (40%), Gaps = 39/264 (14%)

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
           F  L RI+    + + V F  LIK    E ++++AA     +   G +      N+++  
Sbjct: 70  FTSLLRIISRFDSTNHVVFELLIKAYVKERKVLDAAVAVFFMDDCGFKASPVACNSILKA 129

Query: 205 LCRTGHT-IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC------KEAGSANFLG 257
           L   G +  V L L E +A    +F +    D  T + +++ LC      K       + 
Sbjct: 130 LVEEGESKYVWLFLRESLAR---KFPL----DVTTCNILLNSLCTNGEFRKAEDMLQKMK 182

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
             C+++ +  N +  ++                    K  + K A  + + + R  +  +
Sbjct: 183 SCCLSNSATYNTILHWY-------------------VKKGRFKAALCVLEDMERDSIQAD 223

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           + TYNI+I  LC        K     FLL KR+    L PD  TYN LIN F   G+++ 
Sbjct: 224 IYTYNIMIDKLC------RIKRSARAFLLLKRMRKDDLTPDECTYNTLINGFFGEGKINH 277

Query: 378 GFVIFGRILPSCFTPDAVTFTSLI 401
              +F  +L     P   T+T++I
Sbjct: 278 ARCVFNHMLRQTLVPSVATYTTMI 301


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 164/359 (45%), Gaps = 39/359 (10%)

Query: 67  SITPNEALCVFDYMLNMRPSRP-PVTSFNILFGCLAKTKHYDT--------VLSLFKRLN 117
           +++ ++A  +FD +   R + P P  S N     LA+               L+LF R+ 
Sbjct: 87  TLSRDDAHHMFDELF--RQATPVPGRSLNGFLTALARATSSSACITDGPALALALFNRVC 144

Query: 118 LTGLFP-----DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
                P       +TY+IL++C C+  R   G V+ G ILR+      +T ++L+K LC 
Sbjct: 145 REQAGPRVVPLTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCY 204

Query: 173 ESRIMEAA-ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
            +R  EA   L  ++   GC  +VF+Y+ ++ GLC    +  AL+LF+ MA   G     
Sbjct: 205 ANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGG----A 260

Query: 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291
           C P+ + Y+T+I G  KE  +    G +C + F  + +         V+   + +  +ID
Sbjct: 261 CSPNVVAYNTVIHGFFKEGET----GKAC-SLFHEMTRQG-------VKPDVVTYNLIID 308

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
            LCK   +  A  + + +   G  P+ VTYN +I G    G++ E         +F+++ 
Sbjct: 309 ALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAK------MFRKMK 362

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFF 410
           S GL P++   N  +   CK GR      IF  +      PD V++ +L+       +F
Sbjct: 363 SRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWF 421



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 150/338 (44%), Gaps = 36/338 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +     K        SLF  +   G+ PD  TYN++I+  CK   +    +V
Sbjct: 263 PNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELV 322

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L ++  +   PD VT+  +I       R+ EAA +F K++  G   ++   N+ +  LC+
Sbjct: 323 LRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCK 382

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCM---- 261
            G +  A  +F+ M A G+       +PD ++Y T++ G   E   A+ +G F+ M    
Sbjct: 383 HGRSKEAAEIFDSMTAKGH-------KPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNG 435

Query: 262 ---------------ASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIAR 303
                          A    ++     F  ++ Q +    + +  +I    ++ +L  A 
Sbjct: 436 IAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAM 495

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           E F  +   G+ PN   Y+ +I+G C  G + + K      L+ + +N     PD+  +N
Sbjct: 496 EKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKE-----LVSEMINKGIPRPDIVFFN 550

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +IN  CK GRV     IF  +      PD +TFTSLI
Sbjct: 551 SVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLI 588



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 141/345 (40%), Gaps = 60/345 (17%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS---------- 142
           FNIL    AK    D  + +F  +   G+ PD  TY+ +I+ F +MGR++          
Sbjct: 443 FNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMV 502

Query: 143 --------------------HGFVVLGRILRSCFT------PDAVTFTSLIKDLCAESRI 176
                               HG +V  + L S         PD V F S+I  LC + R+
Sbjct: 503 ARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRV 562

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
           M+A  +F  +   G   DV T+ +LI+G C  G    A  + + M        V  E D 
Sbjct: 563 MDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEV------VGVETDI 616

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
           +TYST++DG  K     + L       F  + +         V+   + +  ++ GL + 
Sbjct: 617 VTYSTLLDGYFKNGRINDGLTL-----FREMQRKG-------VKPNTVTYGIMLAGLFRA 664

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
            +   AR+ F  +  +G    V  Y I++ GLC +   DE        +LF++L +  + 
Sbjct: 665 GRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADE------AIILFQKLGTMNVK 718

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +   N +IN   K+ R      +F  I  S   P+  T+  +I
Sbjct: 719 FSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMI 763



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 122/307 (39%), Gaps = 60/307 (19%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +FD + ++   RP V +F  L          D    +   + + G+  D  TY+ L
Sbjct: 564 DAHDIFDLVTDI-GERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTL 622

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ + K GR++ G  +   + R    P+ VT+  ++  L    R + A   F ++   G 
Sbjct: 623 LDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGT 682

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            + V  Y  ++ GLCR      A+ LF+++   N +F                       
Sbjct: 683 TVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKF----------------------- 719

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                      S + LN M                   I+ + K+ + + A+ELF ++  
Sbjct: 720 -----------SITILNTM-------------------INAMYKVQRKEEAKELFATISA 749

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           +GL+PN  TY ++I  L  DG +++  +      +F  +  +G+ P     N +I    +
Sbjct: 750 SGLLPNESTYGVMIINLLKDGAVEDANN------MFSSMEKSGIVPGSRLLNRIIRMLLE 803

Query: 372 IGRVSSG 378
            G ++  
Sbjct: 804 KGEIAKA 810


>gi|302767038|ref|XP_002966939.1| hypothetical protein SELMODRAFT_30641 [Selaginella moellendorffii]
 gi|300164930|gb|EFJ31538.1| hypothetical protein SELMODRAFT_30641 [Selaginella moellendorffii]
          Length = 506

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 150/316 (47%), Gaps = 26/316 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R  V++++IL   L   K  + V  + + +   GL  D+ TY+++I+  CK G V    V
Sbjct: 144 RASVSTYSILVAALTAAKRNNDVYEILREMESVGLEADKDTYSLIIHSLCKSGMVDKAKV 203

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++ R++     PDA  +  +I++L    R+ EA  +  +     C   V TYN+L+ G  
Sbjct: 204 LVERMISRNCVPDARIYDPVIEELSKTGRVDEAVEIAKEADAKHCT-SVVTYNSLVLGFL 262

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +       + +F  MA           PD  TY+ + +GL +  G   F       ++  
Sbjct: 263 KARRLKRGIKVFTRMARTGPS------PDIYTYNILFEGLSRH-GLWRF-------AYKL 308

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L +M     L       + F  LI+GL + ++   A  L Q +   G  PN +TY IL++
Sbjct: 309 LPRMNQDGVLPDA----VTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLK 364

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            L  + + DE         LF+RL    L P++YTYN +++  CK GR+     +FG +L
Sbjct: 365 WLARNARADECVE------LFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVML 418

Query: 387 PS-CFTPDAVTFTSLI 401
            S C  P+A+T+ +LI
Sbjct: 419 ASDCTPPNAITYRALI 434



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 125/316 (39%), Gaps = 63/316 (19%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++N L     K +     + +F R+  TG  PD YTYNIL     + G     + +L 
Sbjct: 251 VVTYNSLVLGFLKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLP 310

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           R+ +    PDAVTF SLI  L  ++R   A  L  ++   GC+ +  TY  L+  L R  
Sbjct: 311 RMNQDGVLPDAVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNA 370

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
                + LF+ + +          P+  TY+T++  LCK AG                  
Sbjct: 371 RADECVELFQRLLDRK------LAPNVYTYNTVMSALCK-AG------------------ 405

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP-NVVTYNILIRGL 328
                                       +L  A  LF  +  +   P N +TY  LI GL
Sbjct: 406 ----------------------------RLDQAHRLFGVMLASDCTPPNAITYRALIHGL 437

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C   +++         LL   +      PD+  Y  ++  FCK GR+   F +  R +P 
Sbjct: 438 CLKMELERA------VLLLDAMAKRDCAPDVACYGTIVAAFCKQGRIDEAFELLER-MP- 489

Query: 389 CFTPDAVTFTSLIKIL 404
            F  D V F +L++ L
Sbjct: 490 -FAGDKVMFRTLVRAL 504



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 116/255 (45%), Gaps = 21/255 (8%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           VF  M    PS P + ++NILF  L++   +     L  R+N  G+ PD  T+N LIN  
Sbjct: 273 VFTRMARTGPS-PDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDAVTFNSLINGL 331

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
            +  R      ++  ++     P+A+T+T L+K L   +R  E   LF +L       +V
Sbjct: 332 VEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARADECVELFQRLLDRKLAPNV 391

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
           +TYNT+++ LC+ G    A  LF  M   +        P+AITY  +I GLC        
Sbjct: 392 YTYNTVMSALCKAGRLDQAHRLFGVMLASD-----CTPPNAITYRALIHGLC-------- 438

Query: 256 LGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
           L      +   L+ MA       V C    +  ++   CK  ++  A EL + +P AG  
Sbjct: 439 LKMELERAVLLLDAMAKRDCAPDVAC----YGTIVAAFCKQGRIDEAFELLERMPFAG-- 492

Query: 316 PNVVTYNILIRGLCN 330
            + V +  L+R LC 
Sbjct: 493 -DKVMFRTLVRALCK 506



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 132/322 (40%), Gaps = 28/322 (8%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           P T   I F    +  +    + L K +   G        N  +   CK G V  G +  
Sbjct: 75  PATYLIIRFKACHERGNLRATIELLKDMAENGSTLSIQDLNGCLRGLCKAGNVD-GALEF 133

Query: 149 GRILRSCFTPDAV--TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            R  ++ F+  A   T++ L+  L A  R  +   +  ++   G E D  TY+ +I+ LC
Sbjct: 134 FREAKNSFSLRASVSTYSILVAALTAAKRNNDVYEILREMESVGLEADKDTYSLIIHSLC 193

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           ++G    A  L E M + N      C PDA  Y  +I+ L K       +  +  A    
Sbjct: 194 KSGMVDKAKVLVERMISRN------CVPDARIYDPVIEELSKTGRVDEAVEIAKEADAKH 247

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
              +  Y  LV      L FL       K  +LK   ++F  + R G  P++ TYNIL  
Sbjct: 248 CTSVVTYNSLV------LGFL-------KARRLKRGIKVFTRMARTGPSPDIYTYNILFE 294

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GL   G       +   + L  R+N  G+ PD  T+N LIN   +  R      +   ++
Sbjct: 295 GLSRHGL------WRFAYKLLPRMNQDGVLPDAVTFNSLINGLVEDNRYHRAVTLIQEMV 348

Query: 387 PSCFTPDAVTFTSLIKILEINS 408
                P+A+T+T L+K L  N+
Sbjct: 349 SRGCDPNAITYTILLKWLARNA 370



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 137/361 (37%), Gaps = 91/361 (25%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP-DAVTFTSLIKDLCAESRIMEAA- 180
           P+ YTYN +++  CK GR+     + G +L S  TP +A+T+ +LI  LC +  +  A  
Sbjct: 2   PNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDSTPPNAITYRALIHGLCLKMELERAVL 61

Query: 181 ---ALFTKLRVF--------------------------------GCELDVFTYNTLINGL 205
              A++ KL                                   G  L +   N  + GL
Sbjct: 62  LLDAVYFKLSWLVPATYLIIRFKACHERGNLRATIELLKDMAENGSTLSIQDLNGCLRGL 121

Query: 206 CRTGHTIVALNLFEEMANG----------------------NGEF--------GVVCEPD 235
           C+ G+   AL  F E  N                       N +          V  E D
Sbjct: 122 CKAGNVDGALEFFREAKNSFSLRASVSTYSILVAALTAAKRNNDVYEILREMESVGLEAD 181

Query: 236 AITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
             TYS II  LCK      A  L    M S + +     Y P+             I+ L
Sbjct: 182 KDTYSLIIHSLCKSGMVDKAKVL-VERMISRNCVPDARIYDPV-------------IEEL 227

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353
            K  ++  A E+ +    A    +VVTYN L+ G        + +  +    +F R+  T
Sbjct: 228 SKTGRVDEAVEIAKE-ADAKHCTSVVTYNSLVLGFL------KARRLKRGIKVFTRMART 280

Query: 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK-ILEINSFFRQ 412
           G  PD+YTYNIL     + G     + +  R+      PDAVTF SLI  ++E N + R 
Sbjct: 281 GPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDAVTFNSLINGLVEDNRYHRA 340

Query: 413 V 413
           V
Sbjct: 341 V 341



 Score = 39.7 bits (91), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +F  ML    + P   ++  L   L      +  + L   +      PD   Y  
Sbjct: 408 DQAHRLFGVMLASDCTPPNAITYRALIHGLCLKMELERAVLLLDAMAKRDCAPDVACYGT 467

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           ++  FCK GR+   F +L R+    F  D V F +L++ LC
Sbjct: 468 IVAAFCKQGRIDEAFELLERM---PFAGDKVMFRTLVRALC 505


>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 544

 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 27/331 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+C+F  ++         T FNIL   L      D    L   +   G  PD  TYNI
Sbjct: 195 DDAICLFRELMRSHSCLDAFT-FNILIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTYNI 253

Query: 131 LINCFCKMGRVSHGFVVLGRILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           L++  C++ +V     +L  +   C F P+ V++T++I   C  S++ EA++LF ++   
Sbjct: 254 LLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKMDEASSLFYEMVRS 313

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G + +VFT++ L++G  + G    AL + +++          C P+ IT +++I+G C+ 
Sbjct: 314 GTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHG------CAPNVITLTSLINGYCR- 366

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
           AG  N  G       +A N  A  +           +  LI  LCK ++L+ AR L + L
Sbjct: 367 AGWVNH-GLDLWREMNARNIPANLY----------TYSVLISALCKSNRLQEARNLLRIL 415

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            ++ ++P    YN +I G C  G +DE      V  + ++       PD  T+ ILI   
Sbjct: 416 KQSDIVPLAFVYNPVIDGYCKSGNIDEAN--AIVAEMEEKCK-----PDKLTFTILIIGH 468

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
           C  GR      IF ++L S  TPD +T  +L
Sbjct: 469 CMKGRTPEAIGIFYKMLASGCTPDDITIRTL 499



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 151/362 (41%), Gaps = 52/362 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A  ++D M +     P       L    A    +D    L      +G+  D   YN 
Sbjct: 125 NSAKLLYDSMRS-DGQLPDSRLLGFLVSSFALADRFDVSKELLAEAQCSGVQVDVIVYNN 183

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            +N   K  R+     +   ++RS    DA TF  LI+ LC    + EA  L   +  FG
Sbjct: 184 FLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDEAFELLGDMGSFG 243

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE--PDAITYSTIIDGLCK 248
           C  D+ TYN L++GLCR      A +L EE+        + CE  P+ ++Y+T+I G C+
Sbjct: 244 CSPDIVTYNILLHGLCRIDQVDRARDLLEEVC-------LKCEFAPNVVSYTTVISGYCR 296

Query: 249 -----EAGS-----------ANFLGFSC----------MASFSALNKMAFYF---PLVRV 279
                EA S            N   FS           MAS   ++K   +    P V  
Sbjct: 297 LSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCAPNV-- 354

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
               +    LI+G C+   +    +L++ +    +  N+ TY++LI  LC   ++ E ++
Sbjct: 355 ----ITLTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQEARN 410

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
                 L + L  + + P  + YN +I+ +CK G +     I   +   C  PD +TFT 
Sbjct: 411 ------LLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANAIVAEMEEKC-KPDKLTFTI 463

Query: 400 LI 401
           LI
Sbjct: 464 LI 465



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 141/317 (44%), Gaps = 31/317 (9%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++N+L   L +   +++   L+  +   G  PD      L++ F    R      +L   
Sbjct: 110 TYNMLLRSLCQAGLHNSAKLLYDSMRSDGQLPDSRLLGFLVSSFALADRFDVSKELLAEA 169

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVFGCELDVFTYNTLINGLCRTGH 210
             S    D + + + +  L   +R+ +A  LF +L R   C LD FT+N LI GLC  G 
Sbjct: 170 QCSGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSC-LDAFTFNILIRGLCTAGD 228

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSA-NFLGFSCMASFSAL 267
              A  L  +M    G FG  C PD +TY+ ++ GLC+  +   A + L   C+    A 
Sbjct: 229 VDEAFELLGDM----GSFG--CSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAP 282

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           N               +++  +I G C++SK+  A  LF  + R+G  PNV T++ L+ G
Sbjct: 283 N--------------VVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDG 328

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
               G M       +   + K++   G  P++ T   LIN +C+ G V+ G  ++  +  
Sbjct: 329 FVKAGDM------ASALGMHKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNA 382

Query: 388 SCFTPDAVTFTSLIKIL 404
                +  T++ LI  L
Sbjct: 383 RNIPANLYTYSVLISAL 399



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 134/291 (46%), Gaps = 32/291 (10%)

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           +RL+++  F   +TYN+L+   C+ G  +   ++   +      PD+     L+      
Sbjct: 100 ERLSMSHSF---WTYNMLLRSLCQAGLHNSAKLLYDSMRSDGQLPDSRLLGFLVSSFALA 156

Query: 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233
            R   +  L  + +  G ++DV  YN  +N L +      A+ LF E+   +        
Sbjct: 157 DRFDVSKELLAEAQCSGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCL----- 211

Query: 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY--FPLVRVQCLCLNFLCLID 291
            DA T++ +I GLC  AG  +        +F  L  M  +   P +      + +  L+ 
Sbjct: 212 -DAFTFNILIRGLCT-AGDVD-------EAFELLGDMGSFGCSPDI------VTYNILLH 256

Query: 292 GLCKISKLKIARELFQSL-PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           GLC+I ++  AR+L + +  +    PNVV+Y  +I G C   +MDE         LF  +
Sbjct: 257 GLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKMDEASS------LFYEM 310

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +G  P+++T++ L++ F K G ++S   +  +IL     P+ +T TSLI
Sbjct: 311 VRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLI 361



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 1/129 (0%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           +N R     + ++++L   L K+       +L + L  + + P  + YN +I+ +CK G 
Sbjct: 380 MNARNIPANLYTYSVLISALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDGYCKSGN 439

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +     ++  +   C  PD +TFT LI   C + R  EA  +F K+   GC  D  T  T
Sbjct: 440 IDEANAIVAEMEEKC-KPDKLTFTILIIGHCMKGRTPEAIGIFYKMLASGCTPDDITIRT 498

Query: 201 LINGLCRTG 209
           L + L ++G
Sbjct: 499 LSSCLLKSG 507


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 150/333 (45%), Gaps = 38/333 (11%)

Query: 79  YMLNMRPSR----PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           ++L+  P R    P   S+N++   LA+   +   L L++R+    + P  +T+ +    
Sbjct: 127 HLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARA 186

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            C++GR      +L  + R    PDAV + ++I  L A+  + EAA L  ++ + GC  D
Sbjct: 187 LCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAAD 246

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
           V T+N L+ GLC  G    A  L + M          C P  +TY  ++ GLC+      
Sbjct: 247 VNTFNDLVLGLCGLGRVREAARLVDRMMTQG------CMPSVVTYGFLLQGLCR------ 294

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPR 311
                   +  A    A    L  V  + LN +   CL +G     KL  A EL++ +  
Sbjct: 295 --------TRQADEACAMLGRLPEVNVVMLNTVIRGCLTEG-----KLARATELYEMMGS 341

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G  P+V TY+IL+ GLC  G+      + +   +   +   G  P++ TY+ L++ FC+
Sbjct: 342 KGCPPDVHTYSILMHGLCKLGR------FGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCR 395

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            G       +  ++L   F+ ++  +  +I  L
Sbjct: 396 NGMWDDARAMLDQMLAKGFSMNSQGYNGIIYAL 428



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 159/362 (43%), Gaps = 52/362 (14%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           M+  +   P V +++IL   L K   + + + +   +   G  P+  TY+ L++ FC+ G
Sbjct: 338 MMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNG 397

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
                  +L ++L   F+ ++  +  +I  LC + ++ +A  L  +++  GC+ D+ TYN
Sbjct: 398 MWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYN 457

Query: 200 TLINGLCRTGHTIVA----LNLFEE----------------MANGNGEFGVV-------- 231
           T+I  LC       A     NL EE                + NG  + G+         
Sbjct: 458 TMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLH 517

Query: 232 -CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
            C+ D I+Y+ +I  LCKE      +          +    F + +            LI
Sbjct: 518 GCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNM------------LI 565

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           + LCK  K++ A EL + +   GL P++VTYN LI GLC  G             L ++L
Sbjct: 566 NELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWT------HAALNLLEKL 619

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFF 410
            +  + PD+ TYNILI+  CK+  +    ++  + +     P+  T+  +++     +F 
Sbjct: 620 PNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQ-----NFV 674

Query: 411 RQ 412
           RQ
Sbjct: 675 RQ 676



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 155/417 (37%), Gaps = 92/417 (22%)

Query: 72  EALCVFDYMLNMRPSRPPVT-SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +AL ++  ML  R   PP T +F +    L +       L+L + +   G  PD   Y  
Sbjct: 160 DALLLYRRML--RDRVPPTTFTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQT 217

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+     G V+   ++L  +L      D  TF  L+  LC   R+ EAA L  ++   G
Sbjct: 218 VIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQG 277

Query: 191 CELDVFTYNTLINGLCRT-------------------------------GHTIVALNLFE 219
           C   V TY  L+ GLCRT                               G    A  L+E
Sbjct: 278 CMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYE 337

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCK---------------EAGSA-NFLGFSCMAS 263
            M +        C PD  TYS ++ GLCK               E G A N + +S +  
Sbjct: 338 MMGSKG------CPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLH 391

Query: 264 FSALNKMAFYFPLVRVQCLCLNFLC-------LIDGLCKISKLKIARELFQSLPRAGLMP 316
               N M      +  Q L   F         +I  LCK  KL  A  L Q +   G  P
Sbjct: 392 SFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKP 451

Query: 317 NVVTYNILIRGLCNDGQMDETKH----------------YET-VFLLFK--------RLN 351
           ++ TYN +I  LCN+  M+E +H                Y T +  L +        RL 
Sbjct: 452 DICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLA 511

Query: 352 STGLFP----DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           S  L      D+ +YN LI   CK G V     +   ++     P+  ++  LI  L
Sbjct: 512 SEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINEL 568



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 9/163 (5%)

Query: 45  DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104
           D  S    +K  CK   EG++     + ++ + + M+  +  +P   S+N+L   L K  
Sbjct: 522 DVISYNGLIKALCK---EGNV-----DRSMALLEEMVT-KGIKPNNFSYNMLINELCKAG 572

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164
                L L K +   GL PD  TYN LIN  CK+G       +L ++      PD VT+ 
Sbjct: 573 KVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYN 632

Query: 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            LI   C    + +AA L  K    G   +  T+  ++    R
Sbjct: 633 ILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQNFVR 675



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 9/132 (6%)

Query: 48  SLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYD 107
           S    + E CK+    D        AL +   MLN   + P + ++N L   L K     
Sbjct: 560 SYNMLINELCKAGKVRD--------ALELSKEMLNQGLT-PDIVTYNTLINGLCKVGWTH 610

Query: 108 TVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167
             L+L ++L    + PD  TYNILI+  CK+  +    ++L + +     P+  T+  ++
Sbjct: 611 AALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMV 670

Query: 168 KDLCAESRIMEA 179
           ++   ++  +E 
Sbjct: 671 QNFVRQTVNLEG 682


>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g02060, chloroplastic; Flags: Precursor
 gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 157/340 (46%), Gaps = 27/340 (7%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDT----VLSLFKRLNLTGLFPDR 125
           P + L  FD++ N   S     SF ++   L + ++ +     + S+ +R N      DR
Sbjct: 81  PADGLRFFDWVSNKGFSHKE-QSFFLMLEFLGRARNLNVARNFLFSIERRSNGCVKLQDR 139

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           Y +N LI  +   G       +   + +   +P  +TF SL+  L    R   A  LF +
Sbjct: 140 Y-FNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDE 198

Query: 186 LR-VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           +R  +G   D +T+NTLING C+      A  +F++M   +      C PD +TY+TIID
Sbjct: 199 MRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYH------CNPDVVTYNTIID 252

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           GLC+ AG    +  + ++    L K     P V      +++  L+ G C   ++  A  
Sbjct: 253 GLCR-AGKVK-IAHNVLSGM--LKKATDVHPNV------VSYTTLVRGYCMKQEIDEAVL 302

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +F  +   GL PN VTYN LI+GL    + DE K      L+      T   PD  T+NI
Sbjct: 303 VFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKD----ILIGGNDAFTTFAPDACTFNI 358

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           LI   C  G + +   +F  +L     PD+ +++ LI+ L
Sbjct: 359 LIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTL 398



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 153/375 (40%), Gaps = 61/375 (16%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD M       P   +FN L     K    D    +FK + L    PD  TYN +I+  
Sbjct: 195 LFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGL 254

Query: 136 CKMGRVSHGFVVLGRILRSC--FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
           C+ G+V     VL  +L+      P+ V++T+L++  C +  I EA  +F  +   G + 
Sbjct: 255 CRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKP 314

Query: 194 DVFTYNTLINGL-------------------------------------CRTGHTIVALN 216
           +  TYNTLI GL                                     C  GH   A+ 
Sbjct: 315 NAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMK 374

Query: 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMAFYF 274
           +F+EM N      +   PD+ +YS +I  LC   E   A  L       F+ L +     
Sbjct: 375 VFQEMLN------MKLHPDSASYSVLIRTLCMRNEFDRAETL-------FNELFEKEVLL 421

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
                + L   +  + + LC   K K A ++F+ L + G+  +  +Y  LI G C +G+ 
Sbjct: 422 GKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQ-DPPSYKTLITGHCREGKF 480

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
                YE + L+ +R       PDL TY +LI+   KIG          R+L S + P A
Sbjct: 481 KPA--YELLVLMLRR----EFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRSSYLPVA 534

Query: 395 VTFTSLIKILEINSF 409
            TF S++  L    F
Sbjct: 535 TTFHSVLAELAKRKF 549



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 113/268 (42%), Gaps = 29/268 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLN--LTGLFPDRYTY 128
           +EA+ VF  ML+ R  +P   ++N L   L++   YD +  +    N   T   PD  T+
Sbjct: 298 DEAVLVFHDMLS-RGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTF 356

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-- 186
           NILI   C  G +     V   +L     PD+ +++ LI+ LC  +    A  LF +L  
Sbjct: 357 NILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNELFE 416

Query: 187 --RVFG---CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
              + G   C+     YN +   LC  G T  A  +F ++       GV    D  +Y T
Sbjct: 417 KEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKR----GV---QDPPSYKT 469

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           +I G C+E        F        L     + P +        +  LIDGL KI +  +
Sbjct: 470 LITGHCREG------KFKPAYELLVLMLRREFVPDLET------YELLIDGLLKIGEALL 517

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLC 329
           A +  Q + R+  +P   T++ ++  L 
Sbjct: 518 AHDTLQRMLRSSYLPVATTFHSVLAELA 545



 Score = 39.3 bits (90), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 31/62 (50%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD  TY +LI+   K+G        L R+LRS + P A TF S++ +L       E+  L
Sbjct: 497 PDLETYELLIDGLLKIGEALLAHDTLQRMLRSSYLPVATTFHSVLAELAKRKFANESFCL 556

Query: 183 FT 184
            T
Sbjct: 557 VT 558


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 146/348 (41%), Gaps = 36/348 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           E   V D M+      P + S+NI+   L +         L   +   G++PD  TY  L
Sbjct: 346 EGRSVLDEMVE-NGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTL 404

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ +C  G+V     +L  ++R    P+  T  +L+  L  E R  EA  +  K+     
Sbjct: 405 LHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSY 464

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFG---------------VVCEPD 235
           +LD  T N ++NGLCR G    A  +  EM  +G    G                   PD
Sbjct: 465 QLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPD 524

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
            ITY+T+I+GLCK  G            F  +     +   V      LNF       CK
Sbjct: 525 VITYTTLINGLCK-VGKLE----EAKKKFIEMMAKNLHPDSVTYDTFVLNF-------CK 572

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
             K+  A  + + + R G    + TYN LI GL + GQ+ E      ++ L   +   G+
Sbjct: 573 QGKISSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFE------MYGLMDEMRERGI 626

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRIL-PSCFTPDAVTFTSLIK 402
            PD+ TYN +INC C+ G+      +   +L     +P+  +F  LIK
Sbjct: 627 HPDICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVSPNVSSFKILIK 674



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 143/341 (41%), Gaps = 60/341 (17%)

Query: 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH--------------------- 143
           HY  V SL+  +  TG+ P+ YT+N+LI   C+   + H                     
Sbjct: 133 HY--VTSLYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVG 190

Query: 144 ----GFVVLGRILRSCFTPDA--------VTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
               GF   GR  ++    D         V + +L+   C +    EA  L  ++   G 
Sbjct: 191 ILVRGFCRAGRTKQALEFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGL 250

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             DV T+N+ I+ LCR G    A  +F +M   +GE G+  +P+ +T++ ++ G C+E  
Sbjct: 251 LPDVVTFNSRISALCRAGKVFEASRIFRDMQM-DGELGLP-KPNVVTFNLMLKGFCQEG- 307

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
               +     +    + K   +  L       L       GL +  KL   R +   +  
Sbjct: 308 ----MMEEARSLVETMKKGGNFVSLESYNTWLL-------GLLRNGKLLEGRSVLDEMVE 356

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+ PN+ +YNI++ GLC +  M + +       L   + S G++PD  TY  L++ +C 
Sbjct: 357 NGIEPNIYSYNIVMDGLCRNHMMLDARR------LMDLMVSNGVYPDTVTYTTLLHGYCS 410

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
            G+V     I   ++     P+  T  +L     +NS +++
Sbjct: 411 KGKVFEAKAILNEMIRKGCHPNTYTCNTL-----LNSLWKE 446



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 145/347 (41%), Gaps = 63/347 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYT-------------------- 127
           P   +FN+L   L ++   D    LF +++  G  P+++T                    
Sbjct: 149 PETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRTKQALEF 208

Query: 128 -------------YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174
                        YN L++ FCK         ++ R+      PD VTF S I  LC   
Sbjct: 209 VDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAG 268

Query: 175 RIMEAAALFTKLRVFGCEL-----DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
           ++ EA+ +F  +++ G EL     +V T+N ++ G C+ G    A +L E M  G G F 
Sbjct: 269 KVFEASRIFRDMQMDG-ELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKG-GNF- 325

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCL 289
           V  E    +Y+T + GL +            +   S L++M        ++    ++  +
Sbjct: 326 VSLE----SYNTWLLGLLRNG--------KLLEGRSVLDEMVEN----GIEPNIYSYNIV 369

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           +DGLC+   +  AR L   +   G+ P+ VTY  L+ G C+ G++ E K       +   
Sbjct: 370 MDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAK------AILNE 423

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
           +   G  P+ YT N L+N   K GR S    +  ++    +  D VT
Sbjct: 424 MIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVT 470



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 141/337 (41%), Gaps = 46/337 (13%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V +FN++     +    +   SL + +   G F    +YN  +    + G++  G  
Sbjct: 290 KPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRS 349

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           VL  ++ +   P+  ++  ++  LC    +++A  L   +   G   D  TY TL++G C
Sbjct: 350 VLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYC 409

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A  +  EM          C P+  T +T+++ L KE   +             
Sbjct: 410 SKGKVFEAKAILNEMIRKG------CHPNTYTCNTLLNSLWKEGRKS-----EAEEMLQK 458

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL------------PRAGL 314
           +N+ ++    V           +++GLC+  +L+ A E+   +            P AGL
Sbjct: 459 MNEKSYQLDTVTCN-------IVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGL 511

Query: 315 ----------MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
                     +P+V+TY  LI GLC  G+++E K        F  + +  L PD  TY+ 
Sbjct: 512 VNSIHNVSTNVPDVITYTTLINGLCKVGKLEEAKKK------FIEMMAKNLHPDSVTYDT 565

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +  FCK G++SS   +   +  +  +    T+ SLI
Sbjct: 566 FVLNFCKQGKISSALRVLKDMERNGCSKTLQTYNSLI 602



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 154/366 (42%), Gaps = 36/366 (9%)

Query: 28  NEPSYPTTTATLRLTVKD---RASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMR 84
           NE SY   T T  + V        LE+  +   +   +G  +    N    + + + N+ 
Sbjct: 460 NEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVS 519

Query: 85  PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144
            + P V ++  L   L K    +     F  +    L PD  TY+  +  FCK G++S  
Sbjct: 520 TNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSA 579

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
             VL  + R+  +    T+ SLI  L ++ +I E   L  ++R  G   D+ TYN +IN 
Sbjct: 580 LRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINC 639

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           LC  G T  A +L  EM +     GVV  P+  ++  +I   CK   S +F   +C    
Sbjct: 640 LCEGGKTKDATSLLHEMLDK----GVVS-PNVSSFKILIKAFCK---SGDF-KVACELFD 690

Query: 265 SAL----NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
            AL    +K A Y          L F  L+ G     KL  A+ELF++     L+     
Sbjct: 691 VALSVCGHKEALY---------SLMFNELLAG----GKLSDAKELFEASLERSLLSKNFM 737

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y  LI  LC DG++D+         L ++L   G   D  ++  +I+   K G       
Sbjct: 738 YEDLIDKLCKDGRLDDAHG------LLQKLIDKGYCFDHSSFIPVIDGLSKRGNKQQADE 791

Query: 381 IFGRIL 386
           + GRI+
Sbjct: 792 L-GRIM 796



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 123/292 (42%), Gaps = 32/292 (10%)

Query: 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176
           N++   PD  TY  LIN  CK+G++         ++     PD+VT+ + + + C + +I
Sbjct: 517 NVSTNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKI 576

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
             A  +   +   GC   + TYN+LI GL   G       L +EM     E G+   PD 
Sbjct: 577 SSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMR----ERGI--HPDI 630

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM---AFYFPLVRVQCLCLNFLCLIDGL 293
            TY+ +I+ LC+        G     + S L++M       P V       +F  LI   
Sbjct: 631 CTYNNMINCLCE--------GGKTKDATSLLHEMLDKGVVSPNVS------SFKILIKAF 676

Query: 294 CKISKLKIARELFQ-SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352
           CK    K+A ELF  +L   G       Y+++   L   G++ + K       LF+    
Sbjct: 677 CKSGDFKVACELFDVALSVCG--HKEALYSLMFNELLAGGKLSDAKE------LFEASLE 728

Query: 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             L    + Y  LI+  CK GR+     +  +++   +  D  +F  +I  L
Sbjct: 729 RSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQKLIDKGYCFDHSSFIPVIDGL 780


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 141/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +    L P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ +++ M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMEIYKLMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYM 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 128/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P+ VTFT+LI   C   R+  A  ++  +      
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLETAFEYRKRMI----KENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLLKEMQRDGYMPSVVT 418


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 127/284 (44%), Gaps = 27/284 (9%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G+ PD  ++  L+   C+ GR      +L  +    F  D+ T T +++  C + R    
Sbjct: 176 GVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNV 235

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             LF ++   G   ++  Y+  I+GLC  G+   A ++ EEM  G G      +P+  T+
Sbjct: 236 TDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMV-GKG-----LKPNVYTH 289

Query: 240 STIIDGLCKEAGSANFLGFSCMA--SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           +++IDGLCK       +G+   A   F  L K + Y P V        +  +I G CK  
Sbjct: 290 TSLIDGLCK-------IGWMERAFRLFLKLVKSSSYKPNVH------TYTVMIGGYCKEG 336

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           KL  A  L   +   GL PN  TY  LI G C  G  D        F L  ++   G  P
Sbjct: 337 KLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDR------AFELMNKMKLEGFLP 390

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++YTYN +I  FCK G++   + +           D VT+T LI
Sbjct: 391 NIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILI 434



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 140/321 (43%), Gaps = 31/321 (9%)

Query: 87  RPPVTSFNIL-FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           RP   SF  L  GC  + + ++   +L   +   G   D  T  +++  FC+ GR  +  
Sbjct: 178 RPDHRSFRALVLGCCREGR-FEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVT 236

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            +  R+      P+ V +++ I  LC    + +A  +  ++   G + +V+T+ +LI+GL
Sbjct: 237 DLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGL 296

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G    A  LF ++   +       +P+  TY+ +I G CKE                
Sbjct: 297 CKIGWMERAFRLFLKLVKSSSY-----KPNVHTYTVMIGGYCKEG--------------- 336

Query: 266 ALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
            L +       +  Q L  N   +  LI G CK      A EL   +   G +PN+ TYN
Sbjct: 337 KLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYN 396

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            +I G C  G++ E       + + +   S GL  D  TY ILI   CK G ++    +F
Sbjct: 397 AIIGGFCKKGKIQE------AYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLF 450

Query: 383 GRILPSCFTPDAVTFTSLIKI 403
            ++      PD  T+T++I +
Sbjct: 451 KQMAEKSCHPDIHTYTTIIAM 471



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 144/331 (43%), Gaps = 52/331 (15%)

Query: 106 YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165
           +  V  LF+R++  G  P+   Y+  I+  C+ G V   F VL  ++     P+  T TS
Sbjct: 232 FRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTS 291

Query: 166 LIKDLCAESRIMEAAALFTKL-RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224
           LI  LC    +  A  LF KL +    + +V TY  +I G C+ G    A  L   M   
Sbjct: 292 LIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMV-- 349

Query: 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF--YFPLVRVQCL 282
             E G+   P+  TY+T+I G CK        G S   +F  +NKM    + P +     
Sbjct: 350 --EQGLA--PNTNTYTTLIHGHCK--------GGSFDRAFELMNKMKLEGFLPNI----- 392

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG---------- 332
              +  +I G CK  K++ A ++ +     GL  + VTY ILI   C  G          
Sbjct: 393 -YTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFK 451

Query: 333 QMDETK-----HYETVFL--------------LFKRLNSTGLFPDLYTYNILINCFCKIG 373
           QM E       H  T  +              LF +  S GL P   TY  +I  +C++G
Sbjct: 452 QMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLG 511

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           +++S   +F R++     PD++T+ +LI  L
Sbjct: 512 KLTSALKVFERMVQHGCLPDSITYGALISSL 542



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 141/327 (43%), Gaps = 27/327 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++ ++ G   K         L  R+   GL P+  TY  LI+  CK G     F 
Sbjct: 319 KPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFE 378

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++ ++    F P+  T+ ++I   C + +I EA  +       G  LD  TY  LI   C
Sbjct: 379 LMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHC 438

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + GH   AL+LF++MA  +      C PD  TY+TII   C++           M     
Sbjct: 439 KQGHITCALDLFKQMAEKS------CHPDIHTYTTIIAMYCQQ---------RQMEQSQQ 483

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L        LV  +     +  +I G C++ KL  A ++F+ + + G +P+ +TY  LI 
Sbjct: 484 LFDKCLSIGLVPTK---QTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALIS 540

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI- 385
            LC + +++E +       LF+ +    L P   T   L   +C+  +++       R+ 
Sbjct: 541 SLCKESRLEEAR------ALFETMLDKHLVPCDVTRVTLAYEYCRRDKITIAVSFLDRLD 594

Query: 386 -LPSCFTPDA-VTFTSLIKILEINSFF 410
                 T DA V   S +  L+  S F
Sbjct: 595 KRQQAHTADALVRKLSTVGNLDAASLF 621


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 158/339 (46%), Gaps = 39/339 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  ++ +   L K  H+     LF  +   G+ P+ +TYN +I+ FC  GR S    
Sbjct: 77  KPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR 136

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  ++     PD +TF +LI     E ++ EA  L  ++       D  TYN++I G C
Sbjct: 137 LLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFC 196

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGS---------- 252
           +      A ++F+ MA+          PD +T++TIID  C+    + G           
Sbjct: 197 KHNRFDDAKHMFDLMAS----------PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRG 246

Query: 253 --ANFLGFSCM----ASFSALNKMAFYFPLVRVQCLCLNFLC---LIDGLCKISKLKIAR 303
             AN   ++ +         LN     F  +    +C + +    L+ G C+  KL+ A 
Sbjct: 247 LVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEAL 306

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           ELF+ +  + +  + V YNI+I G+C   ++DE       + LF  L   G+ PD+ TYN
Sbjct: 307 ELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEA------WDLFCSLPIHGVEPDVQTYN 360

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           ++I+ FC    +S   V+F ++  +   PD  T+ +LI+
Sbjct: 361 VMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIR 399



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 144/327 (44%), Gaps = 40/327 (12%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR--- 140
           R   P V +FN L     K         L   +    +FPD  TYN +I  FCK  R   
Sbjct: 144 REINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDD 203

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
             H F ++        +PD VTF ++I   C   R+ E   L  ++   G   +  TYNT
Sbjct: 204 AKHMFDLMA-------SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 256

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260
           LI+G C   +   A +LF+EM +       VC PD IT + ++ G C+            
Sbjct: 257 LIHGFCEVDNLNAAQDLFQEMISHG-----VC-PDTITCNILLYGFCEN----------- 299

Query: 261 MASFSALNKMAFYFPLVRVQCLCLNFLC---LIDGLCKISKLKIARELFQSLPRAGLMPN 317
                 L +    F ++++  + L+ +    +I G+CK SK+  A +LF SLP  G+ P+
Sbjct: 300 ----EKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD 355

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           V TYN++I G C    + +        +LF ++   G  PD  TYN LI    K G +  
Sbjct: 356 VQTYNVMISGFCGKSAISDAN------VLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 409

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKIL 404
              +   +  + F+ DA T   +  ++
Sbjct: 410 SIELISEMRSNGFSGDAFTIKMVADLI 436



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 120/250 (48%), Gaps = 32/250 (12%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
            TP  +TF +LI  LC E R++EAAAL  K+   G  +DV TY T++NG+C+ G T  AL
Sbjct: 6   LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 65

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSANFLGFSCMASFSALNKMAFY 273
           NL  +M   +       +PD + YS IID LCK+     A +L    +    A N     
Sbjct: 66  NLLSKMEETH------IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPN----- 114

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
                       + C+IDG C   +   A+ L + +    + P+V+T+N LI     +G+
Sbjct: 115 ---------VFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGK 165

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           + E +       L   +    +FPD  TYN +I  FCK  R      +F  +     +PD
Sbjct: 166 LFEAEK------LCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA----SPD 215

Query: 394 AVTFTSLIKI 403
            VTF ++I +
Sbjct: 216 VVTFNTIIDV 225



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 122/283 (43%), Gaps = 28/283 (9%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           GL P   T+N LIN  C  GRV     ++ +++      D VT+ +++  +C       A
Sbjct: 5   GLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSA 64

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L +K+     + DV  Y+ +I+ LC+ GH   A  LF EM     E G+   P+  TY
Sbjct: 65  LNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEML----EKGIA--PNVFTY 118

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           + +IDG C                +S   ++        +    L F  LI    K  KL
Sbjct: 119 NCMIDGFCS------------FGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKL 166

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A +L   +    + P+ VTYN +I G C   + D+ KH      +F  + S    PD+
Sbjct: 167 FEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKH------MFDLMAS----PDV 216

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            T+N +I+ +C+  RV  G  +   I       +  T+ +LI 
Sbjct: 217 VTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIH 259



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 122/309 (39%), Gaps = 65/309 (21%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +FD M     + P V +FN +     + K  D  + L + ++  GL  +  TYN 
Sbjct: 202 DDAKHMFDLM-----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 256

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ FC++  ++    +   ++     PD +T   L+   C   ++ EA  LF  +++  
Sbjct: 257 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 316

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            +LD   YN +I+G+C+      A +LF  +       GV  EPD  TY+ +I G C + 
Sbjct: 317 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLP----IHGV--EPDVQTYNVMISGFCGK- 369

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                                                         S +  A  LF  + 
Sbjct: 370 ----------------------------------------------SAISDANVLFHKMK 383

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P+  TYN LIRG    G++D++        L   + S G   D +T  ++ +   
Sbjct: 384 DNGHEPDNSTYNTLIRGCLKAGEIDKS------IELISEMRSNGFSGDAFTIKMVADLIT 437

Query: 371 KIGRVSSGF 379
             GR+   F
Sbjct: 438 D-GRLDKSF 445


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 134/282 (47%), Gaps = 42/282 (14%)

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++ FCK G+V     V   +++  F P+ VT++SL+   C    + +A ++F  +   G 
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGV 285

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCE---PDAITYSTIIDGLCK 248
             D+ +YN LING C+   T  A+NLFEEM          C    P+ +TY+++IDGLCK
Sbjct: 286 NPDIQSYNILINGFCKIKMTDAAMNLFEEMH---------CRKIIPNVVTYNSLIDGLCK 336

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLV-----RVQCL-CLNFLCLIDGLCKISKLKIA 302
                               K+++   LV     R Q    + +  L+D LCK      A
Sbjct: 337 SG------------------KISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKA 378

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
             L   L   GL PN+ TY ILI GLC  G+ ++ ++      +F+ L   G   ++ TY
Sbjct: 379 IALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQN------IFEDLLVKGYNINVNTY 432

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            ++I+ FC  G       +  ++  +   P+AVT+  +I+ L
Sbjct: 433 TVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIIIRSL 474



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 134/308 (43%), Gaps = 35/308 (11%)

Query: 59  SSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL 118
           +S  GD+ ++      C   +M        PV++F        K        ++F  +  
Sbjct: 199 TSLRGDVNNLRE----CFVSFMFQYLGMMAPVSTF-------CKEGKVKEAKNVFAAMMK 247

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
            G  P+  TY+ L++ +C +  V+    +   + +    PD  ++  LI   C       
Sbjct: 248 KGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCKIKMTDA 307

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A  LF ++       +V TYN+LI+GLC++G    AL L +EM +  G+      PD IT
Sbjct: 308 AMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHD-RGQ-----PPDIIT 361

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           YS+++D LCK     N  G   +A  + L           +Q     +  LI+GLCK  +
Sbjct: 362 YSSLLDALCK-----NHPGDKAIALLTKLKDQG-------LQPNMYTYTILINGLCKGGR 409

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
            + A+ +F+ L   G   NV TY ++I   CN+G   E         +  ++   G  P+
Sbjct: 410 PEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGE------ALAMLSKMEENGCIPN 463

Query: 359 LYTYNILI 366
             TY I+I
Sbjct: 464 AVTYEIII 471



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 119/269 (44%), Gaps = 35/269 (13%)

Query: 152 LRSCFTPDAVTFTSL---IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
           LR CF      +  +   +   C E ++ EA  +F  +   G + +V TY++L++G C  
Sbjct: 208 LRECFVSFMFQYLGMMAPVSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLV 267

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGFSCMASF 264
                A ++F  MA G    GV   PD  +Y+ +I+G CK    +A    F    C    
Sbjct: 268 KEVNKAKSIFNNMAQG----GV--NPDIQSYNILINGFCKIKMTDAAMNLFEEMHCR--- 318

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
                        ++    + +  LIDGLCK  K+  A +L   +   G  P+++TY+ L
Sbjct: 319 -------------KIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSL 365

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           +  LC +   D+         L  +L   GL P++YTY ILIN  CK GR      IF  
Sbjct: 366 LDALCKNHPGDK------AIALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFED 419

Query: 385 ILPSCFTPDAVTFTSLIKILEINSFFRQV 413
           +L   +  +  T+T +I +   N  F + 
Sbjct: 420 LLVKGYNINVNTYTVMIHVFCNNGMFGEA 448



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 30/205 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  +F+ M       P + S+NIL     K K  D  ++LF+ ++   + P+  TYN 
Sbjct: 271 NKAKSIFNNMA-QGGVNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNS 329

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G++S+   ++  +      PD +T++SL+  LC      +A AL TKL+  G
Sbjct: 330 LIDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQG 389

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEE-MANG-----------------NGEFGVV- 231
            + +++TY  LINGLC+ G    A N+FE+ +  G                 NG FG   
Sbjct: 390 LQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEAL 449

Query: 232 ----------CEPDAITYSTIIDGL 246
                     C P+A+TY  II  L
Sbjct: 450 AMLSKMEENGCIPNAVTYEIIIRSL 474



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 1/149 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           AL + D M + R   P + +++ L   L K    D  ++L  +L   GL P+ YTY ILI
Sbjct: 343 ALKLVDEMHD-RGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILI 401

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK GR      +   +L   +  +  T+T +I   C      EA A+ +K+   GC 
Sbjct: 402 NGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCI 461

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            +  TY  +I  L        A  L  EM
Sbjct: 462 PNAVTYEIIIRSLFDKDENDKAEKLLLEM 490


>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
 gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
           Group]
 gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
          Length = 618

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 165/356 (46%), Gaps = 39/356 (10%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P+EAL VF  +  +    P + + N +   L K      V  LF  +   G+ P   TYN
Sbjct: 122 PDEALSVFGRLREL----PALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYN 177

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LIN     G V+  + V  +++     P+ VT+T++I  LC E  I +A  LF +++  
Sbjct: 178 TLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMICALCEEDCIGDAEGLFLEMKEA 237

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK- 248
           G   +++TYN L++   +  +   AL  + ++     + G+V  P+ + ++T+IDGLC+ 
Sbjct: 238 GMRPNLYTYNALMSSHFKRDNIKHALVFYYDLL----KCGLV--PNDVIFTTLIDGLCQA 291

Query: 249 ----EAGSA----------------NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288
               EA +                 N L      S  A   +AF+  ++R       F C
Sbjct: 292 NRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRPDEFTC 351

Query: 289 --LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             ++ GLC   ++++A    + + ++G+  N   YN+LI   C  G +DE        + 
Sbjct: 352 SIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEA------LVT 405

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             R++  G+ P++ TY+ LI+   K G +     I+  ++     P+ VT+T+LI 
Sbjct: 406 CTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIH 461



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 147/341 (43%), Gaps = 43/341 (12%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +GD+      +A  V+D M+  R   P V ++  +   L +         LF  +   G+
Sbjct: 186 QGDVA-----KAWEVWDQMVARRID-PNVVTYTTMICALCEEDCIGDAEGLFLEMKEAGM 239

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+ YTYN L++   K   + H  V    +L+    P+ V FT+LI  LC  +RI EA  
Sbjct: 240 RPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCQANRITEAKN 299

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           +F  +  +     V  YN+LI+G  R+G+   AL  F+E+            PD  T S 
Sbjct: 300 IFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKG------LRPDEFTCSI 353

Query: 242 IIDGLCKEAG---SANFLGFSCMASFSALNKMAFYFPL---------------------V 277
           ++ GLC       +  FL     +   ALN  A+   +                     V
Sbjct: 354 VVRGLCDGGQMQVATRFLEVMQQSGI-ALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEV 412

Query: 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
            V+   + +  LIDG  K  +++IA  ++  +   G+ PNVVTY  LI G   +G MD  
Sbjct: 413 GVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMD-- 470

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
                 F L K +   G++ +  T ++L++  C+  RV   
Sbjct: 471 ----AAFWLQKEMEEKGIYSNAITVSVLVDGLCRENRVQDA 507



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 137/312 (43%), Gaps = 32/312 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  +N L     ++ +    L+ F+ +   GL PD +T +I++   C  G++      
Sbjct: 311 PTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRPDEFTCSIVVRGLCDGGQMQVATRF 370

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  + +S    +A  +  LI + C    + EA    T++   G E +V TY++LI+G  +
Sbjct: 371 LEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSK 430

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
            G   +A+ ++ EM A G        EP+ +TY+ +I G  K                  
Sbjct: 431 NGEMEIAMAIYTEMVAKG-------VEPNVVTYTALIHGHAKNGDMDAAFWLQ-----KE 478

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF------QSLPRAGLMPNVVT 320
           + +   Y   + V  L       +DGLC+ ++++ A          +   +   + N VT
Sbjct: 479 MEEKGIYSNAITVSVL-------VDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVT 531

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y  LI GL  DGQ +E  H+      F  +  +G+ PD +TY ++I   C +G V +  +
Sbjct: 532 YMTLIYGLYIDGQYNEACHF------FSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAMM 585

Query: 381 IFGRILPSCFTP 392
           ++  ++     P
Sbjct: 586 LYADMVKVGVKP 597



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 13/268 (4%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
            G   S    EAL  F  ++  +  RP   + +I+   L             + +  +G+
Sbjct: 321 HGAFRSGYAQEALAFFQEIIR-KGLRPDEFTCSIVVRGLCDGGQMQVATRFLEVMQQSGI 379

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
             +   YN+LI+ +CK G +    V   R+      P+ VT++SLI        +  A A
Sbjct: 380 ALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMA 439

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           ++T++   G E +V TY  LI+G  + G    A  L +EM     E G+    +AIT S 
Sbjct: 440 IYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEME----EKGIYS--NAITVSV 493

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           ++DGLC+E    + + F  +  +S   K      +       + ++ LI GL    +   
Sbjct: 494 LVDGLCRENRVQDAVRF--IMEYSGQKKSEKNPSIAN----SVTYMTLIYGLYIDGQYNE 547

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLC 329
           A   F  +  +G++P+  TY ++IRGLC
Sbjct: 548 ACHFFSCMRDSGMVPDRFTYTLVIRGLC 575


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 152/339 (44%), Gaps = 29/339 (8%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           GD+ +     A  V  +M     SR  VT   ++ G   + K  +    L        L 
Sbjct: 275 GDVEA-----AKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALV 329

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD   Y +LI+ +C+ G++     +L  +LR     +     SLI   C    I EA  +
Sbjct: 330 PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGV 389

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
            T++  +  + D ++YNTL++G CR GHT  A NL ++M     + G+  EP  +TY+T+
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKML----QEGI--EPTVLTYNTL 443

Query: 243 IDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
           + GLC+            + +F    ++        V    + +  L+DGL K+   + A
Sbjct: 444 LKGLCR------------VGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGA 491

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
             L++ +   G   + +T+N +I GLC  G+M E +       +F ++   G  PD  TY
Sbjct: 492 STLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEE------IFDKMKDLGCSPDGITY 545

Query: 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             LI+ +CK   V   F + G +     +P    + SLI
Sbjct: 546 RTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLI 584



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 146/331 (44%), Gaps = 24/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  V   M       P   ++ +L     +T   D  + L   +   GL  + +  N 
Sbjct: 313 DEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNS 372

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN +CK G +     V+ R++     PD+ ++ +L+   C E    EA  L  K+   G
Sbjct: 373 LINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEG 432

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            E  V TYNTL+ GLCR G    AL ++  M     + GV   PD + YST++DGL K  
Sbjct: 433 IEPTVLTYNTLLKGLCRVGAFDDALQIWHLMM----KXGVA--PDEVGYSTLLDGLFK-- 484

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
              NF G S +      + +A  F   R+      F  +I GLCK+ K+  A E+F  + 
Sbjct: 485 -MENFEGASTLWK----DILARGFTKSRI-----TFNTMISGLCKMGKMVEAEEIFDKMK 534

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G  P+ +TY  LI G C    + +       F +   +    + P +  YN LI+   
Sbjct: 535 DLGCSPDGITYRTLIDGYCKASNVGQA------FKVKGAMEREXISPSIEMYNSLISGLF 588

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K  R+     +   +     TP+ VT+ +LI
Sbjct: 589 KSRRLVEXTDLLTEMGIRGLTPNIVTYGALI 619



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 161/384 (41%), Gaps = 58/384 (15%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + D ML      P V ++N L   L +   +D  L ++  +   G+ PD   Y+ 
Sbjct: 419 SEAFNLCDKMLQ-EGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYST 477

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++   KM        +   IL   FT   +TF ++I  LC   +++EA  +F K++  G
Sbjct: 478 LLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLG 537

Query: 191 CELDVFTYNTLINGLCRTGHTIVA---------------LNLFEEMANG----------- 224
           C  D  TY TLI+G C+  +   A               + ++  + +G           
Sbjct: 538 CSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXT 597

Query: 225 --NGEFGVV-CEPDAITYSTIIDGLCKEAG----------------SANFLGFSCMAS-- 263
               E G+    P+ +TY  +IDG CKE                  SAN +  S M S  
Sbjct: 598 DLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGL 657

Query: 264 --FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL-KIARELFQSLPRAGLMPNVVT 320
                +++       +       +  C +    + + + KIA  L +S  +  L+PN + 
Sbjct: 658 YRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESC-KTFLLPNNIV 716

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           YNI I GLC  G++D+ + +      F  L+  G  PD +TY  LI+ +   G V   F 
Sbjct: 717 YNIAIAGLCKTGKVDDARRF------FSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFR 770

Query: 381 IFGRILPSCFTPDAVTFTSLIKIL 404
           +   +L     P+ VT+ +LI  L
Sbjct: 771 LRDEMLRRGLVPNIVTYNALINGL 794



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 24/311 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   S+N L     +  H     +L  ++   G+ P   TYN L+   C++G       
Sbjct: 399 KPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQ 458

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +++    PD V +++L+  L        A+ L+  +   G      T+NT+I+GLC
Sbjct: 459 IWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLC 518

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G  + A  +F++M +      + C PD ITY T+IDG CK +                
Sbjct: 519 KMGKMVEAEEIFDKMKD------LGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREX 572

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           ++      P + +      +  LI GL K  +L    +L   +   GL PN+VTY  LI 
Sbjct: 573 IS------PSIEM------YNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALID 620

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C +G +D+       F  +  +   GL  ++   + +++   ++GR+    ++  +++
Sbjct: 621 GWCKEGMLDKA------FSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMV 674

Query: 387 PSCFTPDAVTF 397
              F PD   F
Sbjct: 675 DHGFFPDHECF 685



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 155/366 (42%), Gaps = 35/366 (9%)

Query: 40  RLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNM-RPSRPPVTSFNILFG 98
           R+  + RA L Q + + CK    G++          ++D ++ + R      T F+++  
Sbjct: 116 RMYDETRAYLNQLV-DLCKFKDRGNV----------IWDELVGVYREFAFSPTVFDMILK 164

Query: 99  CLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
              +       L +F  +   G  P   + N L+N   K G       V  +++R    P
Sbjct: 165 VYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVP 224

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D    + ++   C + ++ EAA    K+   G E ++ TY++LING    G    A  + 
Sbjct: 225 DVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVL 284

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
           + M+    E GV    + +TY+ +I G CK+                 + + A   P  R
Sbjct: 285 KFMS----EKGV--SRNVVTYTLLIKGYCKQCKMD-----EAEKVLRGMQEEAALVPDER 333

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                  +  LIDG C+  K+  A  L   + R GL  N+   N LI G C  G++ E +
Sbjct: 334 A------YGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAE 387

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
              T      R+    L PD Y+YN L++ +C+ G  S  F +  ++L     P  +T+ 
Sbjct: 388 GVIT------RMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYN 441

Query: 399 SLIKIL 404
           +L+K L
Sbjct: 442 TLLKGL 447



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 147/316 (46%), Gaps = 25/316 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P + +++ L          +    + K ++  G+  +  TY +LI  +CK  ++     
Sbjct: 258 EPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEK 317

Query: 147 VL-GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
           VL G    +   PD   +  LI   C   +I +A  L  ++   G + ++F  N+LING 
Sbjct: 318 VLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGY 377

Query: 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFS 265
           C+ G    A  +   M + N       +PD+ +Y+T++DG C+E  ++         +F+
Sbjct: 378 CKRGEIHEAEGVITRMVDWN------LKPDSYSYNTLLDGYCREGHTSE--------AFN 423

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
             +KM        ++   L +  L+ GLC++     A +++  + + G+ P+ V Y+ L+
Sbjct: 424 LCDKML----QEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLL 479

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GL       + +++E    L+K + + G      T+N +I+  CK+G++     IF ++
Sbjct: 480 DGLF------KMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKM 533

Query: 386 LPSCFTPDAVTFTSLI 401
                +PD +T+ +LI
Sbjct: 534 KDLGCSPDGITYRTLI 549



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 145/332 (43%), Gaps = 30/332 (9%)

Query: 73  ALCVFDYMLNMRPSR-PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           AL VFD M   +  R P + S N L   L K     T   +++++   G+ PD +  +I+
Sbjct: 175 ALYVFDNM--GKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIM 232

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N FCK G+V      + ++      P+ VT+ SLI    +   +  A  +   +   G 
Sbjct: 233 VNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGV 292

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +V TY  LI G C+       ++  E++  G  E   +  PD   Y  +IDG C+   
Sbjct: 293 SRNVVTYTLLIKGYCKQ----CKMDEAEKVLRGMQEEAALV-PDERAYGVLIDGYCRTGK 347

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIARELFQSL 309
             +        +   L++M      +R+      F+C  LI+G CK  ++  A  +   +
Sbjct: 348 IDD--------AVRLLDEM------LRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRM 393

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
               L P+  +YN L+ G C +G      H    F L  ++   G+ P + TYN L+   
Sbjct: 394 VDWNLKPDSYSYNTLLDGYCREG------HTSEAFNLCDKMLQEGIEPTVLTYNTLLKGL 447

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           C++G       I+  ++     PD V +++L+
Sbjct: 448 CRVGAFDDALQIWHLMMKXGVAPDEVGYSTLL 479



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 143/347 (41%), Gaps = 56/347 (16%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P +  +N L   L K++       L   + + GL P+  TY  LI+ +CK G +   F  
Sbjct: 575 PSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSS 634

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG--------CELDV---- 195
              +  +  + + +  ++++  L    RI EA  L  K+   G         + D+    
Sbjct: 635 YFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAA 694

Query: 196 --------------------FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235
                                 YN  I GLC+TG    A   F  ++      G V  PD
Sbjct: 695 IQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLK----GFV--PD 748

Query: 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295
             TY T+I G    AG+ +        +F   ++M     +  +    + +  LI+GLCK
Sbjct: 749 NFTYCTLIHGY-SAAGNVD-------EAFRLRDEMLRRGLVPNI----VTYNALINGLCK 796

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
              +  A+ LF  L + GL PNVVTYN LI G C  G MD        F L  ++   G+
Sbjct: 797 SENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMD------AAFKLKDKMIEEGI 850

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            P + TY+ LIN  CK G +     +  +++ +      + + +L++
Sbjct: 851 SPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQ 897



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 18/209 (8%)

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
           T L P+   YNI I   CK G+V         +    F PD  T+ +LI    A   + E
Sbjct: 708 TFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDE 767

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A  L  ++   G   ++ TYN LINGLC++ +   A  LF ++ +  G F     P+ +T
Sbjct: 768 AFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL-HQKGLF-----PNVVT 821

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+T+IDG CK  G+ +       A+F   +KM        +    + +  LI+GLCK   
Sbjct: 822 YNTLIDGYCK-IGNMD-------AAFKLKDKMIEE----GISPSVVTYSALINGLCKHGD 869

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRG 327
           ++ + +L   + +AG+   ++ Y  L++G
Sbjct: 870 IERSMKLLNQMIKAGVDSKLIEYCTLVQG 898



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 1/140 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + D ML  R   P + ++N L   L K+++ D    LF +L+  GLFP+  TYN 
Sbjct: 766 DEAFRLRDEMLR-RGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNT 824

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ +CK+G +   F +  +++    +P  VT+++LI  LC    I  +  L  ++   G
Sbjct: 825 LIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAG 884

Query: 191 CELDVFTYNTLINGLCRTGH 210
            +  +  Y TL+ G  +T +
Sbjct: 885 VDSKLIEYCTLVQGGFKTSN 904


>gi|297805650|ref|XP_002870709.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316545|gb|EFH46968.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 608

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 138/318 (43%), Gaps = 29/318 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   +FNIL        +Y  V    +++   G  PD  TYN L++ +C+ GR+   F 
Sbjct: 231 HPNTYTFNILTNVFCNNSNYGEVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFY 290

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   + R    PD VT+TSLIK LC + R+ EA   F ++   G + D  +YNTLI   C
Sbjct: 291 LYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYC 350

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    +  L  EM       G    PD  T   I++G  +E                 
Sbjct: 351 KEGMMQQSKKLLHEM------LGNSVVPDRFTCKVIVEGFVREG--------------RL 390

Query: 267 LNKMAFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIARELFQSLPR-AGLMPNVVTYNI 323
           L  + F   L R++ +    +C  LI  LC+  K   A+ L + + +  G      TYN 
Sbjct: 391 LAAVNFVVELRRLKVIIPIEVCDFLIKSLCQEGKPFAAKHLLERISKEEGHEAKPETYNN 450

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI  LC    ++E        +L  +L +     D+ TY  LI C C+IGR      +  
Sbjct: 451 LIESLCCCDAIEEA------LVLKGKLKNQNQVLDVKTYRALIGCLCRIGRNREAESLMA 504

Query: 384 RILPSCFTPDAVTFTSLI 401
            +L S   PD++   +L+
Sbjct: 505 EMLDSEVKPDSIICGALV 522



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 116/269 (43%), Gaps = 34/269 (12%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D   +++L+  + K+G V  GF    +++ S F    VT   L+  L     + +   ++
Sbjct: 163 DPVVFDMLVKGYLKLGLVEDGFSTFRKVIDSGFRVSVVTCNHLLNGLLKLDLMEDCWQVY 222

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
             +   G   + +T+N L N  C   +     +  E+M     E G   EPD +TY+T++
Sbjct: 223 NVMCRVGIHPNTYTFNILTNVFCNNSNYGEVDDFLEKME----EEGF--EPDLVTYNTLV 276

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV----RVQCLCLNFLCLIDGLCKISKL 299
              C+                    K AFY   +    RV    + +  LI GLCK  ++
Sbjct: 277 SSYCRRGRL----------------KEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRV 320

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
           + A + F  +   G+ P+ ++YN LI   C +G M ++K       L   +    + PD 
Sbjct: 321 REAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKK------LLHEMLGNSVVPDR 374

Query: 360 YTYNILINCFCKIGRV--SSGFVIFGRIL 386
           +T  +++  F + GR+  +  FV+  R L
Sbjct: 375 FTCKVIVEGFVREGRLLAAVNFVVELRRL 403



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 6/101 (5%)

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           +++  + R G+ PN  T+NIL    CN+    E   +       +++   G  PDL TYN
Sbjct: 220 QVYNVMCRVGIHPNTYTFNILTNVFCNNSNYGEVDDF------LEKMEEEGFEPDLVTYN 273

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L++ +C+ GR+   F ++  +      PD VT+TSLIK L
Sbjct: 274 TLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGL 314



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++N L   L      +  L L  +L       D  TY  LI C C++GR      ++  +
Sbjct: 447 TYNNLIESLCCCDAIEEALVLKGKLKNQNQVLDVKTYRALIGCLCRIGRNREAESLMAEM 506

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT----KLRVFGCELDVFTYNTLINGLCR 207
           L S   PD++   +L+   C E    +A +L +    + R+F    D  +YN+L+N LC 
Sbjct: 507 LDSEVKPDSIICGALVNRYCKELDFDKAESLLSFFAMEFRIF----DTLSYNSLVNALCE 562

Query: 208 TG 209
           TG
Sbjct: 563 TG 564


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 168/380 (44%), Gaps = 71/380 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL + D M   + + P +T++NIL   L K    +  L +   +   GLFP+  T NI
Sbjct: 395 EEALRIHDEM--RQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNI 452

Query: 131 LINCFCKM-----------------------------------GRVSHGFVVLGRILRSC 155
           +I+  CK                                    GRV   + +  ++L S 
Sbjct: 453 MIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSD 512

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
             P+ V +TSLI++     R  +   ++ ++   GC  D+   N+ ++ + + G      
Sbjct: 513 QIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGR 572

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            LFEE+       G+V  PD  +YS +I GL K             A FS      FY  
Sbjct: 573 ALFEEIKAQ----GLV--PDVRSYSILIHGLVK-------------AGFSRETYKLFY-- 611

Query: 276 LVRVQCLCLNFLC---LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
            ++ Q L L+ L    +IDG CK  K+  A +L + +   GL P VVTY  ++ GL    
Sbjct: 612 EMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKID 671

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           ++DE       ++LF+   S G+  ++  Y+ LI+ F K+GR+   ++I   ++    TP
Sbjct: 672 RLDEA------YMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 725

Query: 393 DAVTFT----SLIKILEINS 408
           ++ T+     +L+K  EI+ 
Sbjct: 726 NSYTWNCLLDALVKAEEIDE 745



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 146/334 (43%), Gaps = 31/334 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +++ ML+     P V  +  L     K    +    ++K +   G  PD    N 
Sbjct: 499 DDAYSLYEKMLD-SDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNS 557

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            ++C  K G V  G  +   I      PD  +++ LI  L       E   LF +++  G
Sbjct: 558 YMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQG 617

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             LDV  YNT+I+G C++G    A  L EEM           +P  +TY +++DGL K  
Sbjct: 618 LHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKG------LQPTVVTYGSVVDGLAK-- 669

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQ 307
                           L++    F   +   + LN   +  LIDG  K+ ++  A  + +
Sbjct: 670 -------------IDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILE 716

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            L + GL PN  T+N L+  L    ++DE +      + F+ + +    P+  TY+I+IN
Sbjct: 717 ELMQKGLTPNSYTWNCLLDALVKAEEIDEAQ------VCFQNMKNLKCSPNAMTYSIMIN 770

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             C I + +  FV +  +      P+ +T+T++I
Sbjct: 771 GLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMI 804



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 130/297 (43%), Gaps = 28/297 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++IL   L K         LF  +   GL  D   YN +I+ FCK G+V   + +
Sbjct: 585 PDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQL 644

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P  VT+ S++  L    R+ EA  LF + +  G +L+V  Y++LI+G  +
Sbjct: 645 LEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGK 704

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-EAGSANFLGFSCMASFS- 265
            G    A  + EE+            P++ T++ ++D L K E      + F  M +   
Sbjct: 705 VGRIDEAYLILEELMQKG------LTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKC 758

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
           + N M +                +I+GLC I K   A   +Q + + GL PN +TY  +I
Sbjct: 759 SPNAMTYSI--------------MINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMI 804

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            GL   G + E +       LF R  ++G  PD   YN +I       +    +++F
Sbjct: 805 AGLAKAGNVMEARG------LFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVF 855



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 153/331 (46%), Gaps = 25/331 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F   L+ +   P   +F  L   L +    D   SL++++  +   P+   Y  
Sbjct: 464 DEACSIF-LGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTS 522

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  F K GR   G  +   ++    +PD +   S +  +     + +  ALF +++  G
Sbjct: 523 LIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQG 582

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV +Y+ LI+GL + G +     LF EM     E G+    D + Y+T+IDG CK +
Sbjct: 583 LVPDVRSYSILIHGLVKAGFSRETYKLFYEMK----EQGL--HLDVLAYNTVIDGFCK-S 635

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G  +        ++  L +M        +Q   + +  ++DGL KI +L  A  LF+   
Sbjct: 636 GKVD-------KAYQLLEEM----KTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAK 684

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
             G+  NVV Y+ LI G    G++DE       +L+ + L   GL P+ YT+N L++   
Sbjct: 685 SIGVDLNVVIYSSLIDGFGKVGRIDEA------YLILEELMQKGLTPNSYTWNCLLDALV 738

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           K   +    V F  +     +P+A+T++ +I
Sbjct: 739 KAEEIDEAQVCFQNMKNLKCSPNAMTYSIMI 769



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 142/325 (43%), Gaps = 25/325 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++  L G L K +  D  + LF+ L+L    P  Y YN +I  +   G+    + +
Sbjct: 306 PDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSL 365

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L R  R    P  + +  ++  L  + ++ EA  +  ++R      ++ TYN LI+ LC+
Sbjct: 366 LERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAP-NLTTYNILIDMLCK 424

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    AL + + M    G F     P+ +T + +ID LCK    A  L  +C       
Sbjct: 425 AGELEAALKVQDTMKEA-GLF-----PNIMTVNIMIDRLCK----AQKLDEACSIFLGLD 474

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +K+    P  R  C       LIDGL +  ++  A  L++ +  +  +PNVV Y  LI+ 
Sbjct: 475 HKVCS--PDSRTFC------SLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQN 526

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
               G+ ++         ++K +   G  PDL   N  ++C  K G V  G  +F  I  
Sbjct: 527 FFKCGRKEDGHK------IYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKA 580

Query: 388 SCFTPDAVTFTSLIKILEINSFFRQ 412
               PD  +++ LI  L    F R+
Sbjct: 581 QGLVPDVRSYSILIHGLVKAGFSRE 605



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 150/367 (40%), Gaps = 49/367 (13%)

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
           + S    EA  V + M   +  RP  +++  L G L+     D +L+LF ++   G   +
Sbjct: 179 VKSHKLKEAFGVIEMMRKFK-FRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEAN 237

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
            + +  L+  F + GR+     +L  +  + FT D V +   I       ++  A   F 
Sbjct: 238 VHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFH 297

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE---------------MANGNGEFG 229
           +++  G   D  TY TLI  LC+      A+ LFEE               M  G G  G
Sbjct: 298 EMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAG 357

Query: 230 VV--------------CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
                           C P  I Y+ I+  L ++      L         A   +  Y  
Sbjct: 358 KFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLTTYN- 416

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                        LID LCK  +L+ A ++  ++  AGL PN++T NI+I  LC   ++D
Sbjct: 417 ------------ILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLD 464

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           E         +F  L+     PD  T+  LI+   + GRV   + ++ ++L S   P+ V
Sbjct: 465 EACS------IFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVV 518

Query: 396 TFTSLIK 402
            +TSLI+
Sbjct: 519 VYTSLIQ 525



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 132/315 (41%), Gaps = 31/315 (9%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N     +A+T++ D +  + + +++ G     +    L+  F K  ++   F V+  + 
Sbjct: 136 YNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMR 195

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           +  F P    +T+LI  L A +R      LF +++  G E +V  + TL+    R G   
Sbjct: 196 KFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRID 255

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            AL+L +EM + +         D + Y+  ID               C      ++    
Sbjct: 256 AALSLLDEMKSNS------FTADLVLYNVCID---------------CFGKVGKVDMAWK 294

Query: 273 YFPLVRVQCLC---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           +F  ++ Q L    + +  LI  LCK  +L  A ELF+ L     +P V  YN +I G  
Sbjct: 295 FFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYG 354

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G+ DE       + L +R    G  P +  YN ++ C  + G+V     I   +    
Sbjct: 355 SAGKFDEA------YSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDA 408

Query: 390 FTPDAVTFTSLIKIL 404
             P+  T+  LI +L
Sbjct: 409 -APNLTTYNILIDML 422



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 6/162 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++  +   LAK    D    LF+     G+  +   Y+ LI+ F K+GR+   ++
Sbjct: 654 QPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYL 713

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +++   TP++ T+  L+  L     I EA   F  ++   C  +  TY+ +INGLC
Sbjct: 714 ILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLC 773

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
                  A   ++EM           +P+ ITY+T+I GL K
Sbjct: 774 MIRKFNKAFVFWQEMQKQG------LKPNNITYTTMIAGLAK 809


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 135/295 (45%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 161 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLI 219

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 220 NGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 279

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG------LKPDKITYTTLIDGCCKEG-- 331

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                    ++F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 332 ------DLDSAFEHRKRMI----QENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSV 381

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +         L K +   G  P + TYN+L+N
Sbjct: 382 GLKPDARTYTMIINEFCKKGDVWKGSK------LLKEMQRDGHVPSVVTYNVLMN 430



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 143/342 (41%), Gaps = 47/342 (13%)

Query: 89  PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           P+ +   +   L K K++  V   ++ +   G     Y +NIL++ FCK G +     V 
Sbjct: 106 PIDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVF 165

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
             I +    P  V++ +L+        + E   L + +   G + DV+TY+ LINGLC+ 
Sbjct: 166 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 225

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                A  LF+EM       G+V  P+ +T++T+IDG CK  G  +      M  +  + 
Sbjct: 226 SKMDDANELFDEMLVK----GLV--PNGVTFTTLIDGHCKN-GRVDL----AMEIYKQML 274

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
             +    L+        +  LI GLCK   LK A  L   +   GL P+ +TY  LI G 
Sbjct: 275 SQSLSPDLI-------TYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGC 327

Query: 329 CNDGQMDETKHYETVFL-----------------------------LFKRLNSTGLFPDL 359
           C +G +D    +    +                             + + + S GL PD 
Sbjct: 328 CKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDA 387

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            TY ++IN FCK G V  G  +   +      P  VT+  L+
Sbjct: 388 RTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+   S P + ++N L   L K         L   +++ GL PD+ TY  LI
Sbjct: 266 AMEIYKQMLSQSLS-PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 324

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E R ++A  +  ++   G +
Sbjct: 325 DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 193 LD-----------------------------------VFTYNTLING 204
            D                                   V TYN L+NG
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 131/269 (48%), Gaps = 35/269 (13%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           + P+ +T  +LIK LC + +I +A     KL   G  LD  +Y TLI+GLC+ G T  AL
Sbjct: 3   YHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAAL 62

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG----------------SANFLGFS 259
           +L + +       G + + +A+ Y+T+I G+CK+                  S N + +S
Sbjct: 63  DLLQRVD------GKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYS 116

Query: 260 CMAS-FSALNKMAFYFPLV------RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
            + S F  + K+     L        ++     F  L+DG CK  K+K  + +F  + + 
Sbjct: 117 ALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQ 176

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G++P+VVTYN L+ G          K   T   +F  +   G+ PD+ +YNILIN FCKI
Sbjct: 177 GIIPDVVTYNSLVDGY------RLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKI 230

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +V     +F  +      P+ VT+ SLI
Sbjct: 231 KKVDKAMNLFNEMHCKNIIPNVVTYNSLI 259



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 130/293 (44%), Gaps = 30/293 (10%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           +N +   + K KH +    L+  +   G+ P+  TY+ LI+ F  +G++     +  +I+
Sbjct: 80  YNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKII 139

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                PD  TF  L+   C + ++ E   +F  +   G   DV TYN+L++G        
Sbjct: 140 LENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVN 199

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A ++F  MA G         PD  +Y+ +I+G CK                  ++K   
Sbjct: 200 TAKSIFNTMAQGG------VNPDIRSYNILINGFCK---------------IKKVDKAMN 238

Query: 273 YFPLVRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
            F  +  + +  N +    LIDGL K  ++  A +L   +   G+ PN++TYN +I  L 
Sbjct: 239 LFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALF 298

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
              Q+D+         L  +    G+ P +YTY ILI+  CK GR+     IF
Sbjct: 299 KTHQVDKA------IALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDARNIF 345



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 146/317 (46%), Gaps = 36/317 (11%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
            S+  L   L K       L L +R++   +  +   YN +I   CK   V+  F +   
Sbjct: 43  VSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSE 102

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           ++    +P+ VT+++LI       ++ +A  LF K+ +   + D +T+N L++G C+   
Sbjct: 103 MVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKD-- 160

Query: 211 TIVALNLFEEMANGNGEFGVVCE----PDAITYSTIIDG--LCKEAGSANFLGFSCMASF 264
                    +M  G   F ++ +    PD +TY++++DG  L KE  +A  + F+ MA  
Sbjct: 161 --------RKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSI-FNTMAQ- 210

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
             +N      P +R      ++  LI+G CKI K+  A  LF  +    ++PNVVTYN L
Sbjct: 211 GGVN------PDIR------SYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSL 258

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I GL   G++           L  +++  G+ P++ TYN +I+   K  +V     +  +
Sbjct: 259 IDGLSKSGRI------SYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITK 312

Query: 385 ILPSCFTPDAVTFTSLI 401
                  P   T+T LI
Sbjct: 313 FKDQGIQPSMYTYTILI 329



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 126/275 (45%), Gaps = 31/275 (11%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  ++  M++   S P V +++ L             + LF ++ L  + PD YT+NI
Sbjct: 94  NDAFDLYSEMVSKGIS-PNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNI 152

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++ FCK  ++  G  V   +++    PD VT+ SL+        +  A ++F  +   G
Sbjct: 153 LVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGG 212

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D+ +YN LING C+      A+NLF EM   N        P+ +TY+++IDGL K  
Sbjct: 213 VNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKN------IIPNVVTYNSLIDGLSKSG 266

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVR------VQCLCLNFLCLIDGLCKISKLKIARE 304
                             ++++   LV       V    L +  +ID L K  ++  A  
Sbjct: 267 ------------------RISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIA 308

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
           L       G+ P++ TY ILI GLC  G++ + ++
Sbjct: 309 LITKFKDQGIQPSMYTYTILIDGLCKGGRLKDARN 343



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 143/318 (44%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   + N L   L              +L   G   D+ +Y  LI+  CK+G       
Sbjct: 4   HPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALD 63

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L R+       +AV + ++I  +C +  + +A  L++++   G   +V TY+ LI+G  
Sbjct: 64  LLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFF 123

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A++LF ++   N       +PD  T++ ++DG CK+              F+ 
Sbjct: 124 VVGKLKDAIDLFNKIILEN------IKPDGYTFNILVDGFCKDRKMK-----EGKTVFAM 172

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           + K      +V        +  L+DG   + ++  A+ +F ++ + G+ P++ +YNILI 
Sbjct: 173 MMKQGIIPDVV-------TYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILIN 225

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C   ++D+  +      LF  ++   + P++ TYN LI+   K GR+S    +  ++ 
Sbjct: 226 GFCKIKKVDKAMN------LFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMH 279

Query: 387 PSCFTPDAVTFTSLIKIL 404
                P+ +T+ S+I  L
Sbjct: 280 DRGVPPNILTYNSIIDAL 297



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 1/151 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A  +F+ M       P + S+NIL     K K  D  ++LF  ++   + P+  TYN 
Sbjct: 199 NTAKSIFNTMAQ-GGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNS 257

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+   K GR+S+   ++ ++      P+ +T+ S+I  L    ++ +A AL TK +  G
Sbjct: 258 LIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQG 317

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            +  ++TY  LI+GLC+ G    A N+FE++
Sbjct: 318 IQPSMYTYTILIDGLCKGGRLKDARNIFEDL 348



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 17/244 (6%)

Query: 15  DRLSRKPTSSISENEPSYPTTTATLRLTVKDRASLEQFLK---ERCKSSG-------EGD 64
           D  S   +  IS N  +Y    +   +  K + +++ F K   E  K  G       +G 
Sbjct: 98  DLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGF 157

Query: 65  ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124
                  E   VF  M+  +   P V ++N L       K  +T  S+F  +   G+ PD
Sbjct: 158 CKDRKMKEGKTVFAMMMK-QGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPD 216

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
             +YNILIN FCK+ +V     +   +      P+ VT+ SLI  L    RI  A  L  
Sbjct: 217 IRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVD 276

Query: 185 KLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           ++   G   ++ TYN++I+ L +T     A+ L  +  +         +P   TY+ +ID
Sbjct: 277 QMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQG------IQPSMYTYTILID 330

Query: 245 GLCK 248
           GLCK
Sbjct: 331 GLCK 334


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 170/393 (43%), Gaps = 66/393 (16%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGD+     N+A  +F  M+  R   P + ++N +   L K +  D   +  +++    +
Sbjct: 235 EGDV-----NKACDLFKEMVQ-RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 288

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+ +TYN LI  +   G+      V   + R    PD VT + L+  LC   +I EA  
Sbjct: 289 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 348

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG------EFGVV---- 231
           +F  + + G   DVF+YN ++NG    G  +   +LF+ M  G+G       F V+    
Sbjct: 349 VFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLML-GDGIAPDFYTFNVLIKAY 407

Query: 232 --------------------CEPDAITYSTIIDGLCK----------------EAGSANF 255
                                +PD +TY T+I  LC+                +  + + 
Sbjct: 408 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 467

Query: 256 LGFSCMA----SFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
             ++C+     +  +L K       +    + L+   F  +I+ LCK+ ++  A+ +F  
Sbjct: 468 YAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDL 527

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
               GL P+ V YN+L+ G C  G+M      E    +F  + S G+ P++  Y  L+N 
Sbjct: 528 TVNVGLHPDAVVYNMLMDGYCLVGKM------EKALRVFDAMVSAGIEPNVVGYGTLVNG 581

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +CKIGR+  G  +F  +L     P  + ++ +I
Sbjct: 582 YCKIGRIDEGLSLFREMLQRGIKPSTILYSIII 614



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 149/342 (43%), Gaps = 25/342 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA  VFD M  M+   P V S+NI+    A       +  LF  +   G+ PD YT+N+L
Sbjct: 345 EARDVFDTMA-MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVL 403

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I  +   G +    ++   +      PD VT+ ++I  LC   ++ +A   F ++   G 
Sbjct: 404 IKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGV 463

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D + YN LI G C  G  + A  L  E+ N           D + +S+II+ LCK   
Sbjct: 464 APDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHL------DIVFFSSIINNLCKLGR 517

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
             +      +     L+  A  + +            L+DG C + K++ A  +F ++  
Sbjct: 518 VMDAQNIFDLTVNVGLHPDAVVYNM------------LMDGYCLVGKMEKALRVFDAMVS 565

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           AG+ PNVV Y  L+ G C  G++DE         LF+ +   G+ P    Y+I+I+   +
Sbjct: 566 AGIEPNVVGYGTLVNGYCKIGRIDEG------LSLFREMLQRGIKPSTILYSIIIDGLFE 619

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
            GR     + F  +  S    D  T+  +++ L  N  F + 
Sbjct: 620 AGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEA 661



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 153/348 (43%), Gaps = 48/348 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF-V 146
           P   ++ IL  C  +    +  L+ F +L  TGL  +    N L+  FC+  R      +
Sbjct: 112 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDI 171

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG--CELDVFTYNTLING 204
           +L R       PD  +++ L+K LC + +  +A  L   +   G  C  +V  YNT+I+G
Sbjct: 172 LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDG 231

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG---SANFL----- 256
             + G    A +LF+EM     + G+   PD +TY++++  LCK      +  FL     
Sbjct: 232 FFKEGDVNKACDLFKEMV----QRGI--PPDLVTYNSVVHALCKARAMDKAEAFLRQMVN 285

Query: 257 ---------------GFSCMASFS----ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
                          G+S    +        +M  +  L  V  L +    L+  LCK  
Sbjct: 286 KRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSM----LMGSLCKYG 341

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG-QMDETKHYETVFLLFKRLNSTGLF 356
           K+K AR++F ++   G  P+V +YNI++ G    G  +D T        LF  +   G+ 
Sbjct: 342 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTD-------LFDLMLGDGIA 394

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           PD YT+N+LI  +   G +    +IF  +      PD VT+ ++I  L
Sbjct: 395 PDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 442



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 170/392 (43%), Gaps = 73/392 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F+ M +    +P V ++  +   L +    D  +  F ++   G+ PD+Y YN 
Sbjct: 414 DKAMIIFNEMRD-HGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 472

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF------- 183
           LI  FC  G +     ++  I+ +    D V F+S+I +LC   R+M+A  +F       
Sbjct: 473 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 532

Query: 184 ----------------------TKLRVF------GCELDVFTYNTLINGLCRTGHTIVAL 215
                                   LRVF      G E +V  Y TL+NG C+ G     L
Sbjct: 533 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 592

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS---ANFLGFSCMASFSALN---- 268
           +LF EM     + G+  +P  I YS IIDGL  EAG    A         S  A++    
Sbjct: 593 SLFREML----QRGI--KPSTILYSIIIDGLF-EAGRTVPAKMKFHEMTESGIAMDICTY 645

Query: 269 --------------KMAFYFPLVRVQCLCLNFLCL---IDGLCKISKLKIARELFQSLPR 311
                         +  F F  +R   + +N + L   IDG+ +  +++ A++LF S+ R
Sbjct: 646 NIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR 705

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           + L+P+VVTY+I+I  L  +G ++E +       +F  + + G  P+    N ++    K
Sbjct: 706 SRLVPSVVTYSIMITNLIKEGLVEEAED------MFSSMQNAGCEPNSRLLNHVVRELLK 759

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
              +        +I    F+ + +T   L+ +
Sbjct: 760 KNEIVRAGAYLSKIDERNFSLEHLTAMLLVDL 791


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 144/327 (44%), Gaps = 39/327 (11%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLN--------LTGLFPDRYTYNILINCFCKM 138
           +P V +F IL   + K +  D  L + ++++           + PD   YN LI+  CK+
Sbjct: 337 QPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKV 396

Query: 139 GRVSHGFVVLGRI--LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           GR   G  ++ R+   + C  PD +T+  LI   C    I +   LF ++   G   +V 
Sbjct: 397 GRQQEGLGLMERMRSQKGC-APDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVV 455

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           T NTL+ G+CRTG    A+N F E A   G  G     DA+TY+ +I+  C      N  
Sbjct: 456 TVNTLVGGMCRTGRVSSAVNFFVE-AQRRGMKG-----DAVTYTALINAFC------NVN 503

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
            F           M  +  +++  C    + +  LI G  +  ++  A  +   L + G+
Sbjct: 504 NFE--------KAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGI 555

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374
            P+ V YN LI G C       T  +  VF + K +   GL PD  TYN LI    K G 
Sbjct: 556 RPDTVCYNTLIGGFC------RTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGD 609

Query: 375 VSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +     +  +++ +   P   T+ ++I
Sbjct: 610 LKFAQKVMRKMIKAGVVPTVATYGAVI 636



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 145/334 (43%), Gaps = 25/334 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           E L + + M + +   P   ++N L     K    +    LF  +N  G+ P+  T N L
Sbjct: 401 EGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTL 460

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   C+ GRVS          R     DAVT+T+LI   C  +   +A  LF ++   GC
Sbjct: 461 VGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGC 520

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             D   Y TLI+G  + G    A  +  E+     + G+   PD + Y+T+I G C+   
Sbjct: 521 SPDAIVYYTLISGFSQAGRMADASFVLAELK----KLGI--RPDTVCYNTLIGGFCR--- 571

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                       F  + +M        ++   + +  LI    K   LK A+++ + + +
Sbjct: 572 ---------TNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIK 622

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN-STGLFPDLYTYNILINCFC 370
           AG++P V TY  +I   C +G  +E         +FK +  ++ + P+   YNILIN  C
Sbjct: 623 AGVVPTVATYGAVINAYCLNGNGNEAME------IFKDMKAASKVPPNTVIYNILINSLC 676

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           K  +V S   +   +     TP+  T+ ++ K L
Sbjct: 677 KNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGL 710



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 135/326 (41%), Gaps = 39/326 (11%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD M N     P V + N L G + +T    + ++ F      G+  D  TY  LIN F
Sbjct: 441 LFDEM-NKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAF 499

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C +        +   +L+S  +PDA+ + +LI       R+ +A+ +  +L+  G   D 
Sbjct: 500 CNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDT 559

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             YNTLI G CRT        + +EM     E G+  +PD ITY+T+I     + G   F
Sbjct: 560 VCYNTLIGGFCRTNKFHRVFEMLKEME----EAGL--KPDTITYNTLI-AYASKNGDLKF 612

Query: 256 LG--FSCMASFSALNKMAFYFPLVRVQCLCLN-----------------------FLCLI 290
                  M     +  +A Y  ++   CL  N                       +  LI
Sbjct: 613 AQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILI 672

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           + LCK +K+K A  L + +   G+ PN  TYN + +GL ++      K  E VF    R+
Sbjct: 673 NSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDE------KDLEKVFEFMDRM 726

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVS 376
                 PD  T  IL      +G + 
Sbjct: 727 IEHACNPDYITMEILTEWLSAVGEIE 752



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 142/333 (42%), Gaps = 49/333 (14%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V + + L     +++  +  L LF  L+ +    + Y  N+ ++   + GRV     V+ 
Sbjct: 157 VNAASFLLRASGRSELVEESLILFNDLDPS--VKNTYLRNVWLSILLRSGRVKDALKVID 214

Query: 150 RILRS-----CFTPDA---VTFTSLIK-----DLCAESRIMEAAALFTKLRVFGCELDVF 196
            +  S     C   DA   + F+ L+K     +L +E  I+    L  K    G  +  F
Sbjct: 215 EMFESNDDSNCRPNDATGDILFSFLLKRERNEELLSEDEIVN---LVLKFGEHGVLISSF 271

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
               LI  LCR   T    +LF EM     + G V E  A   ++++ GL +E       
Sbjct: 272 WMGRLITRLCRNRKTNRGWDLFTEMI----KLGAVLESAAC--NSLLTGLAREG------ 319

Query: 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP------ 310
                 +F+ +N++      + +Q   + F  LI+ +CK  ++  A E+ + +       
Sbjct: 320 ------NFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESG 373

Query: 311 --RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
                + P+VV YN LI GLC  G     +  E + L+ +  +  G  PD  TYN LI+ 
Sbjct: 374 GISVSVEPDVVIYNTLIDGLCKVG-----RQQEGLGLMERMRSQKGCAPDTITYNCLIDG 428

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           FCK G +  G  +F  +      P+ VT  +L+
Sbjct: 429 FCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLV 461



 Score = 45.4 bits (106), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 5/127 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           NEA+ +F  M       P    +NIL   L K     + +SL + + + G+ P+  TYN 
Sbjct: 646 NEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNA 705

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +         +   F  + R++     PD +T   L + L A   I           V G
Sbjct: 706 IFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERLKKF-----VAG 760

Query: 191 CELDVFT 197
           CE+   T
Sbjct: 761 CEVSSST 767


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 143/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A ALF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++ +M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMEIYRQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI  LC +G
Sbjct: 312 -----------ITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYL 413

Query: 392 PDAVT 396
           P+ VT
Sbjct: 414 PNVVT 418



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 124/275 (45%), Gaps = 24/275 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V SFN L     K    D    L   +  +G+ PD YTY++LIN  CK  ++     
Sbjct: 168 RPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANA 227

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L +   P+ VTFT+LI   C   R+  A  ++ ++       D+ TYNTLI GLC
Sbjct: 228 LFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLC 287

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A +L +EM+          +PD ITY+T+IDG CKE             +F  
Sbjct: 288 KKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEG--------DLETAFEY 333

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +M        ++   + +  LI  LC+  +   A ++ + +   GL P + TY ++I 
Sbjct: 334 RKRMI----KENIRLDDVAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIIN 389

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
             C  G +       T   L K +   G  P++ T
Sbjct: 390 EFCKKGDV------WTGSKLLKEMQRDGYLPNVVT 418



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 114/243 (46%), Gaps = 26/243 (10%)

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM- 221
           F  L+ + C    I  A ++F  +  +G    V ++NTL+NG  + G       L   M 
Sbjct: 139 FNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
           A+G        +PD  TYS +I+GLCKE         S M   +AL        LV    
Sbjct: 199 ASG-------VQPDVYTYSVLINGLCKE---------SKMDDANALFDEMLDNGLVPNG- 241

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
             + F  LIDG CK  ++ +A E+++ +    L+P+++TYN LI GLC  G + + +   
Sbjct: 242 --VTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQD-- 297

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
               L   ++  GL PD  TY  LI+  CK G + + F    R++      D V +T+LI
Sbjct: 298 ----LIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALI 353

Query: 402 KIL 404
             L
Sbjct: 354 SXL 356


>gi|302761046|ref|XP_002963945.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
 gi|300167674|gb|EFJ34278.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
          Length = 376

 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 148/327 (45%), Gaps = 29/327 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            +A  V D ML  +      T   ++ G L  +K +   L++   +   G  P    YN 
Sbjct: 46  EQACNVLDKMLEGKYEATTFTYGRLVDGFLRLSK-FSEALAVLDVMAERGCIPPAIVYNQ 104

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK G+V   F +   ++++  +P   T+ SLI  LC + +  EA     ++   G
Sbjct: 105 LIDGLCKAGKVEEAFELSTTMVKNGCSPTLYTYNSLINGLCLQGKTDEARDFLQEMADSG 164

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              DV TY  LIN L R G+   A+++F+EM +  G     C PD  +Y  ++ GLCKE 
Sbjct: 165 YNPDVVTYTVLINSLRRDGNFRAAVDVFDEMVSKGG-----CVPDRASYMPLLIGLCKE- 218

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G    +        + L+  +F+  L            LI  L K  KL  AR++F+ L 
Sbjct: 219 GCVQLVQEFLEKHRARLDLGSFFHNL------------LISTLSKHGKLDDARKVFRELA 266

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370
                P +V +N  +  LC      + K     F ++++L   GL PD YTY ILI   C
Sbjct: 267 S----PELVHFNSFMSALC------QRKLISEAFQVYEQLQKKGLVPDTYTYTILIGGLC 316

Query: 371 KIGRVSSGFVIFGRILPSCFTPDAVTF 397
            +GR      +   ++ +   PD+VT+
Sbjct: 317 DVGRTDQALSLKDTMIQNNCKPDSVTY 343



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 110/294 (37%), Gaps = 38/294 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL V D M   R   PP   +N L   L K    +    L   +   G  P  YTYN 
Sbjct: 81  SEALAVLDVMAE-RGCIPPAIVYNQLIDGLCKAGKVEEAFELSTTMVKNGCSPTLYTYNS 139

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL-RVF 189
           LIN  C  G+       L  +  S + PD VT+T LI  L  +     A  +F ++    
Sbjct: 140 LINGLCLQGKTDEARDFLQEMADSGYNPDVVTYTVLINSLRRDGNFRAAVDVFDEMVSKG 199

Query: 190 GCELDVFTYNTLINGLCRTG----------------------HT--IVALNLFEEMANGN 225
           GC  D  +Y  L+ GLC+ G                      H   I  L+   ++ +  
Sbjct: 200 GCVPDRASYMPLLIGLCKEGCVQLVQEFLEKHRARLDLGSFFHNLLISTLSKHGKLDDAR 259

Query: 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN 285
             F  +  P+ + +++ +  LC+       L       +  L K                
Sbjct: 260 KVFRELASPELVHFNSFMSALCQRK-----LISEAFQVYEQLQKKGLVPD-------TYT 307

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
           +  LI GLC + +   A  L  ++ +    P+ VTY IL  GL   G+  + + 
Sbjct: 308 YTILIGGLCDVGRTDQALSLKDTMIQNNCKPDSVTYGILRAGLLKAGRRTDAEQ 361



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 77/173 (44%), Gaps = 18/173 (10%)

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+  ID LC+E      L  +C    + L+KM       + +     +  L+DG  ++SK
Sbjct: 32  YNMTIDLLCREG----LLEQAC----NVLDKMLEG----KYEATTFTYGRLVDGFLRLSK 79

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
              A  +   +   G +P  + YN LI GLC  G+++E       F L   +   G  P 
Sbjct: 80  FSEALAVLDVMAERGCIPPAIVYNQLIDGLCKAGKVEE------AFELSTTMVKNGCSPT 133

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411
           LYTYN LIN  C  G+          +  S + PD VT+T LI  L  +  FR
Sbjct: 134 LYTYNSLINGLCLQGKTDEARDFLQEMADSGYNPDVVTYTVLINSLRRDGNFR 186



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 81  LNMRPSRPPVTSF--NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
           L    +R  + SF  N+L   L+K    D    +F+ L      P+   +N  ++  C+ 
Sbjct: 228 LEKHRARLDLGSFFHNLLISTLSKHGKLDDARKVFREL----ASPELVHFNSFMSALCQR 283

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
             +S  F V  ++ +    PD  T+T LI  LC   R  +A +L   +    C+ D  TY
Sbjct: 284 KLISEAFQVYEQLQKKGLVPDTYTYTILIGGLCDVGRTDQALSLKDTMIQNNCKPDSVTY 343

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNG 226
             L  GL + G    A  L  +M    G
Sbjct: 344 GILRAGLLKAGRRTDAEQLKAQMPAAAG 371


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 155/362 (42%), Gaps = 56/362 (15%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  ++  M  +R  +  V +FNI+   L K             +  +G+ P+  TYN ++
Sbjct: 205 AWVLYAEMFRLR-IKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIV 263

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + +C  GRV     +L  + R    PD+ T+ SLI  +C + R+ EA+ +F ++   G  
Sbjct: 264 HGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLR 323

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGN--------------------------- 225
                YNTLI+G C  G+  +A    +EM                               
Sbjct: 324 PSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECM 383

Query: 226 ----GEFGVVCEPDAITYSTIIDGLCK--EAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
                E G+   PDAITY+ +I+G C+   A  A  L    +AS     K  +       
Sbjct: 384 IKEIQEKGI--SPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTY------- 434

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                    L+  L K +++K A +LF+ +   G++P+ + +N LI G C++  +     
Sbjct: 435 -------TSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNV----- 482

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
            +  F L K ++   + PD  T+N ++   C+ G+V     +F  +      PD ++F +
Sbjct: 483 -KGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNT 541

Query: 400 LI 401
           LI
Sbjct: 542 LI 543



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 148/333 (44%), Gaps = 29/333 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA   F Y +  +   P + + N L     K    +    L+  +    +    YT+NI
Sbjct: 168 DEAFECF-YTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNI 226

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK G++      +G +  S   P+ VT+ +++   C+  R+  A A+ T ++   
Sbjct: 227 MINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQK 286

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            E D FTY +LI+G+C+ G    A  +FEEM            P A+ Y+T+IDG C + 
Sbjct: 287 IEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKG------LRPSAVIYNTLIDGFCNK- 339

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVR--VQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                 G   MAS       A+   +++  +      +  LI  L    +   A  + + 
Sbjct: 340 ------GNLDMAS-------AYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKE 386

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G+ P+ +TYNILI G C         + +  FLL   + ++G+ P   TY  L++ 
Sbjct: 387 IQEKGISPDAITYNILINGYC------RCANAKKAFLLHDEMLASGIKPTKKTYTSLLHV 440

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             K  R+     +F +I      PDA+ F +LI
Sbjct: 441 LSKKNRMKEADDLFKKITSEGVLPDAIMFNALI 473



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 134/321 (41%), Gaps = 60/321 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P ++++N L   L   +  D    + K +   G+ PD  TYNILIN +C+       F++
Sbjct: 359 PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLL 418

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L S   P   T+TSL+  L  ++R+ EA  LF K+   G   D   +N LI+G C 
Sbjct: 419 HDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCS 478

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
             +   A  L ++M        +   PD +T++TI+ G C+E                  
Sbjct: 479 NSNVKGAFELLKDMDR------MKVPPDEVTFNTIMQGHCREG----------------- 515

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                         K++ ARELF  + R G+ P+ +++N LI G
Sbjct: 516 ------------------------------KVEEARELFDEMKRRGIKPDHISFNTLISG 545

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
               G + +       F +   +  TG  P + TYN L+   CK         +   ++ 
Sbjct: 546 YSRRGDIKD------AFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVS 599

Query: 388 SCFTPDAVTFTSLIK-ILEIN 407
              TPD  T+ +LI+ I ++N
Sbjct: 600 KGMTPDDTTYFTLIEGIAKVN 620



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 136/331 (41%), Gaps = 37/331 (11%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           F+ L          D     F  +   G+ P   T N L++ F K+ R    +V+   + 
Sbjct: 154 FDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMF 213

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           R        TF  +I  LC E ++ +A      +   G + ++ TYNT+++G C +G   
Sbjct: 214 RLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVE 273

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A  +   M           EPD+ TY ++I               S M     L + + 
Sbjct: 274 AADAILTTMKRQK------IEPDSFTYGSLI---------------SGMCKQGRLEEASK 312

Query: 273 YFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
            F  +  + L    + +  LIDG C    L +A      + + G+ P + TYN LI  L 
Sbjct: 313 IFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALF 372

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
            + + DE +       + K +   G+ PD  TYNILIN +C+       F++   +L S 
Sbjct: 373 MEQRTDEAE------CMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASG 426

Query: 390 FTPDAVTFTSLIKIL-------EINSFFRQV 413
             P   T+TSL+ +L       E +  F+++
Sbjct: 427 IKPTKKTYTSLLHVLSKKNRMKEADDLFKKI 457



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 11/179 (6%)

Query: 72  EALCVFDYML--NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +A  + D ML   ++P++   TS   L   L+K         LFK++   G+ PD   +N
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTS---LLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFN 470

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            LI+  C    V   F +L  + R    PD VTF ++++  C E ++ EA  LF +++  
Sbjct: 471 ALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRR 530

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           G + D  ++NTLI+G  R G    A  +  EM +          P  +TY+ ++ GLCK
Sbjct: 531 GIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTG------FNPTVLTYNALVQGLCK 583


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 167/379 (44%), Gaps = 69/379 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL +F+ M   R + P V ++NIL   L +    +  L +   +   GLFP+  T NI
Sbjct: 387 EEALRIFEEM--KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNI 444

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL---- 186
           +I+  CK  ++     +   +     TP+AVTF+SLI  L    R+ +A +L+ K+    
Sbjct: 445 MIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCG 504

Query: 187 ------------RVF-------------------GCELDVFTYNTLINGLCRTGHTIVAL 215
                       R F                   GC  D+   NT ++ + + G T    
Sbjct: 505 HVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGR 564

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            LF E+ N +G       PDA +YS +I GL K AG AN                  ++ 
Sbjct: 565 ALFREI-NAHGFI-----PDARSYSILIHGLVK-AGLAN-------------ETYELFYA 604

Query: 276 LVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
           +    C+     +  +IDG CK  K+  A +L + +   G  P VVTY  +I GL    +
Sbjct: 605 MKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDR 664

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           +DE       ++LF+   S G+  ++  Y+ LI+ F K+GR+   ++I   ++    TP+
Sbjct: 665 LDEA------YMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 718

Query: 394 AVTFT----SLIKILEINS 408
             T+     +L+K  EIN 
Sbjct: 719 VYTWNCLLDALVKAEEINE 737



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 138/312 (44%), Gaps = 39/312 (12%)

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           ++K +  TG  PD    N  ++C  K G    G  +   I    F PDA +++ LI  L 
Sbjct: 531 IYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLV 590

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGV 230
                 E   LF  ++  GC LD   YN +I+G C++G    A  L EEM   G+     
Sbjct: 591 KAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH----- 645

Query: 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FL 287
              P  +TY ++IDGL K                  L++    F   +   + LN   + 
Sbjct: 646 --PPTVVTYGSVIDGLAK---------------IDRLDEAYMLFEEAKSNGIKLNVVVYS 688

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LIDG  K+ ++  A  + + L + GL PNV T+N L+  L    +++E        + F
Sbjct: 689 SLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEA------LICF 742

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI------ 401
           + +      P+  TY+ILIN  C++ + +  FV +  +      P+ +T+T++I      
Sbjct: 743 QSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKA 802

Query: 402 -KILEINSFFRQ 412
             ILE +  F +
Sbjct: 803 GNILEASGLFSR 814



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 127/296 (42%), Gaps = 26/296 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   S++IL   L K    +    LF  +   G   D + YN +I+ FCK G+V+  + +
Sbjct: 577 PDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQL 636

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P  VT+ S+I  L    R+ EA  LF + +  G +L+V  Y++LI+G  +
Sbjct: 637 LEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGK 696

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-EAGSANFLGFSCMASFSA 266
            G    A  + EE+            P+  T++ ++D L K E  +   + F  M     
Sbjct: 697 VGRIDEAYLIMEELMQKG------LTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKC 750

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                            + +  LI+GLC++ K   A   +Q + + GL PN +TY  +I 
Sbjct: 751 PPNQ-------------ITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMIS 797

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           GL   G + E         LF R  + G  PD  +YN +I       +    + +F
Sbjct: 798 GLAKAGNILEASG------LFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALF 847



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 147/328 (44%), Gaps = 27/328 (8%)

Query: 76  VFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
            FD +  MR    RP  +++ IL G L++ +  D +L LF ++   G   + + +  LI 
Sbjct: 179 AFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIR 238

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
            F + GRV     +L  +  +    D V +   I       ++  +   F +++  G   
Sbjct: 239 VFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMP 298

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           D  TY ++I  LC+      A+ LFE++            P A  Y+T+I G     GSA
Sbjct: 299 DDVTYTSMIGVLCKANRLDEAVELFEQLEQNRK------VPCAYAYNTMIMGY----GSA 348

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
               F          K     P V      + + C++  L K  +++ A  +F+ + R  
Sbjct: 349 G--KFDEAYGLLERQKAKGSIPSV------IAYNCILTCLGKKRRVEEALRIFEEMKRDA 400

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           + PNV TYNILI  LC +G+++          +   +   GLFP++ T NI+I+  CK  
Sbjct: 401 V-PNVPTYNILIDMLCREGKLN------AALEIRDDMERAGLFPNVLTVNIMIDRLCKAQ 453

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++     IF  +     TP+AVTF+SLI
Sbjct: 454 KLEEACSIFEGMDDKVCTPNAVTFSSLI 481



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 7/178 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  + + M  ++   P V ++  +   LAK    D    LF+     G+  +   Y+ 
Sbjct: 631 NKAYQLLEEM-KVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 689

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F K+GR+   ++++  +++   TP+  T+  L+  L     I EA   F  ++   
Sbjct: 690 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK 749

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           C  +  TY+ LINGLCR      A   ++EM     + G+  +P+ ITY+T+I GL K
Sbjct: 750 CPPNQITYSILINGLCRVRKFNKAFVFWQEMQ----KLGL--KPNTITYTTMISGLAK 801



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 1/150 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + + ++  +   P V ++N L   L K +  +  L  F+ +      P++ TY+I
Sbjct: 701 DEAYLIMEELMQ-KGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSI 759

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  C++ + +  FV    + +    P+ +T+T++I  L     I+EA+ LF++ +  G
Sbjct: 760 LINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANG 819

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEE 220
              D  +YN +I GL      + A  LFEE
Sbjct: 820 GIPDSASYNAMIEGLSSANKAMDAYALFEE 849



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  LI  L ++ +      LF  +   G   NV  +  LIR    +G++D          
Sbjct: 198 YTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVD------AALS 251

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           L   + S  L  D+  YN+ I+CF K G+V   +  F  +      PD VT+TS+I +L
Sbjct: 252 LLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVL 310


>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
          Length = 693

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 149/355 (41%), Gaps = 53/355 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P ++  N+    L      D  L   +R+   G+ PD YTYN LI   C   RV     +
Sbjct: 162 PDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEM 221

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR-VFGCELDVFTYNTLINGLC 206
           +G +L++   PD +++ +++  LC E R+ E   L  ++R   G   D  TYN LI+GL 
Sbjct: 222 IGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLA 281

Query: 207 RTGHTIVALNLFEE-------------------------MANGNGEFGVV----CEPDAI 237
           + GH   AL    E                         MA      G +    C+PD +
Sbjct: 282 KHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVV 341

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           TYST++DG C+            +       KM  +      +   +    L++GLCK+ 
Sbjct: 342 TYSTVVDGFCR------------IGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVG 389

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           K   A EL          P+ +TY++++ G   +G++ E+   + V  + ++    G FP
Sbjct: 390 KTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKES--CDVVVQMLQK----GFFP 443

Query: 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                N+LI+  CK G+ +       +      T + V FT++     I+ F RQ
Sbjct: 444 TTVEINLLIHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTV-----IHGFSRQ 493



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 140/308 (45%), Gaps = 29/308 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRL-NLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           P   S+  +   L K K  + V  L +R+ N  GLFPD+ TYN+LI+   K G       
Sbjct: 232 PDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALE 291

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L       F  D V +++++   C   R+ EA  +  ++   GC+ DV TY+T+++G C
Sbjct: 292 FLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFC 351

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G    A  + + M   +      C+P+ +T++ +++GLCK   ++         ++  
Sbjct: 352 RIGELDQARKMMKHMYKND------CKPNTVTHTALLNGLCKVGKTSE--------AWEL 397

Query: 267 LNK--MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
           LNK    ++ P        + +  ++ G  +  KLK + ++   + + G  P  V  N+L
Sbjct: 398 LNKSEEEWWTPSD------ITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLL 451

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           I  LC DG+  E K +       ++  S G   ++  +  +I+ F + G + S   +   
Sbjct: 452 IHALCKDGKPAEAKDF------MEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDD 505

Query: 385 ILPSCFTP 392
           +  S   P
Sbjct: 506 MYLSNRHP 513



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 131/314 (41%), Gaps = 26/314 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P      + +    K +    VL L ++    G  PD    N+ +N     GRV      
Sbjct: 130 PEFAQLMLSYSRAGKLRSAMRVLHLMQK---DGCAPDISICNMAVNVLVVAGRVDKALEF 186

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R+ R    PD  T+  LIK LC   R+++A  +   +   GC  D  +Y T+++ LC+
Sbjct: 187 AERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCK 246

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                    L + M N  G F     PD +TY+ +I GL K   +   L F   +     
Sbjct: 247 EKRVEEVRGLLQRMRNDAGLF-----PDQVTYNVLIHGLAKHGHADEALEFLRESEGKRF 301

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                 +  + V   CLN            ++  A+E+   +   G  P+VVTY+ ++ G
Sbjct: 302 RVDEVGYSAI-VHSFCLN-----------GRMAEAKEIVGEMISKGCQPDVVTYSTVVDG 349

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C  G++D+ +       + K +      P+  T+  L+N  CK+G+ S  + +  +   
Sbjct: 350 FCRIGELDQARK------MMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEE 403

Query: 388 SCFTPDAVTFTSLI 401
             +TP  +T++ ++
Sbjct: 404 EWWTPSDITYSVVM 417



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/310 (20%), Positives = 127/310 (40%), Gaps = 26/310 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V +++ +     +    D    + K +      P+  T+  L+N  CK+G+ S  + 
Sbjct: 337 QPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWE 396

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L +     +TP  +T++ ++     E ++ E+  +  ++   G        N LI+ LC
Sbjct: 397 LLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALC 456

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A +  E+  +        C  + + ++T+I G  ++    + L  S M     
Sbjct: 457 KDGKPAEAKDFMEQCQSKG------CTINVVNFTTVIHGFSRQGDLESAL--SLMDDMYL 508

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            N+                +  ++D L K  +LK A  L + +   GL+P  VTY  +I 
Sbjct: 509 SNRHPDVV----------TYTVVVDALGKKGRLKEATGLVEKMLNRGLLPTPVTYRTVIH 558

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             C  G +++  +     L  + + S         YN ++   C  G+++  + +  +IL
Sbjct: 559 RYCEKGNLEDLLNLLEKMLARQEMKS--------AYNQVVEKLCAFGKLNEAYSLLYKIL 610

Query: 387 PSCFTPDAVT 396
            +    DA T
Sbjct: 611 RTASVRDAQT 620



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 111/302 (36%), Gaps = 49/302 (16%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   +   L   L K         L  +       P   TY+++++ F + G++     
Sbjct: 372 KPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCD 431

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V+ ++L+  F P  V    LI  LC + +  EA     + +  GC ++V  + T+I+G  
Sbjct: 432 VVVQMLQKGFFPTTVEINLLIHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFS 491

Query: 207 RTGHTIVALNLFEEMANGN---------------GEFGVVCE--------------PDAI 237
           R G    AL+L ++M   N               G+ G + E              P  +
Sbjct: 492 RQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGLLPTPV 551

Query: 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297
           TY T+I   C E G+   L        +     + Y  +V             + LC   
Sbjct: 552 TYRTVIHRYC-EKGNLEDLLNLLEKMLARQEMKSAYNQVV-------------EKLCAFG 597

Query: 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           KL  A  L   + R   + +  T +IL+    N G     + Y     +F+R     L P
Sbjct: 598 KLNEAYSLLYKILRTASVRDAQTCHILMESFLNRGL--GLQAYNVACRMFRR----NLIP 651

Query: 358 DL 359
           D+
Sbjct: 652 DV 653



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            F  L+    +  KL+ A  +   + + G  P++   N+ +  L   G++D+   +    
Sbjct: 131 EFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFA--- 187

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              +R+   G+ PD+YTYN LI   C   RV     + G +L +   PD +++ +++  L
Sbjct: 188 ---ERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFL 244


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 155/343 (45%), Gaps = 49/343 (14%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +F +L   L +   +  V+ LF  L   G+     TY ++++  C  G  +    ++ R 
Sbjct: 21  AFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELV-RE 79

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           L   +TP    +  +I  LC  SR+M+A  +  K+       +VFTY  L+NGLCR+  T
Sbjct: 80  LSGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKT 139

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
            +A  +F+EM   NG     C+P+ ITY T+I  L + AG  +       A    + + +
Sbjct: 140 KLAREVFQEMKR-NG-----CKPNPITYGTLIQHLSR-AGEID------EALRVMIEQRS 186

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
              P   + C       ++ GLCK S+L  A +  + + + G+ PN VTY+ L+ G    
Sbjct: 187 LELPTDVITC-----TTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQH 241

Query: 332 GQMD------------------------------ETKHYETVFLLFKRLNSTGLFPDLYT 361
           G++D                              +  + +      + L  +G+ PD+ T
Sbjct: 242 GELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVT 301

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           Y++LIN F + G+  +   +   +  +   PD VT+++LI +L
Sbjct: 302 YSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVL 344



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 142/318 (44%), Gaps = 31/318 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  +N +   L +         + +++    + P+ +TY IL+N  C+  +      V
Sbjct: 86  PTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREV 145

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + R+   P+ +T+ +LI+ L     I EA  +  + R      DV T  T++ GLC+
Sbjct: 146 FQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCK 205

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 AL   EEM     + GV   P+ +TYS ++ G  ++ G               L
Sbjct: 206 ASRLDDALKFMEEMR----QMGV--RPNEVTYSNLVHGF-RQHGE--------------L 244

Query: 268 NKMAFYFPLVRVQ----CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +++  +F   + +         +   +D LCK   L  AR+  + L ++G++P+VVTY++
Sbjct: 245 DRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSM 304

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI      GQ D +        L + +   G+ PD+ TY+ LIN  CK  +    F +  
Sbjct: 305 LINTFARAGQFDAS------LELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLE 358

Query: 384 RILPSCFTPDAVTFTSLI 401
            +  +   P+ VT+ S++
Sbjct: 359 LMEAAGSPPNVVTYNSVM 376



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 149/350 (42%), Gaps = 54/350 (15%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++ IL   L ++        +F+ +   G  P+  TY  LI    + G +     V
Sbjct: 121 PNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV 180

Query: 148 LGRILRSCFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +    RS   P D +T T+++  LC  SR+ +A     ++R  G   +  TY+ L++G  
Sbjct: 181 MIE-QRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFR 239

Query: 207 RTGHTIVALNLFEEMANGNG--------------------------------EFGVVCEP 234
           + G     +  FEE     G                                + GVV  P
Sbjct: 240 QHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVV--P 297

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           D +TYS +I+   + AG  +       AS   L  M        V+   + +  LI+ LC
Sbjct: 298 DVVTYSMLINTFAR-AGQFD-------ASLELLEDMRRNG----VKPDVVTYSTLINVLC 345

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K  K + A  L + +  AG  PNVVTYN ++ GLC  G+MDE      V  +++ +  + 
Sbjct: 346 KERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDE------VHRVYEMMLKSR 399

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             PD+ TY+I++N   K G + S   +F  I  S   PDA  ++ +I  L
Sbjct: 400 CSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSL 449



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 140/318 (44%), Gaps = 44/318 (13%)

Query: 71  NEALCVFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +EAL V   M+  R    P  V +   + G L K    D  L   + +   G+ P+  TY
Sbjct: 175 DEALRV---MIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTY 231

Query: 129 NILINCFCKMGRVSHGFVVLGRILR--------SCFTPDAVTFTSLIKDLCAESRIMEAA 180
           + L++ F + G        L R++R           + +A  +   +  LC    +  A 
Sbjct: 232 SNLVHGFRQHGE-------LDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRAR 284

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
               +LR  G   DV TY+ LIN   R G    +L L E+M   NG      +PD +TYS
Sbjct: 285 KSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRR-NG-----VKPDVVTYS 338

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           T+I+ LCKE        F        L + A   P V      + +  ++DGLCK  K+ 
Sbjct: 339 TLINVLCKERK------FQDAFRLLELMEAAGSPPNV------VTYNSVMDGLCKSGKMD 386

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
               +++ + ++   P+VVTY+I++ GL   G +D      +   LF+ + S+   PD  
Sbjct: 387 EVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLD------SAVKLFELIKSSREGPDAA 440

Query: 361 TYNILINCFCKIGRVSSG 378
            Y+++I   C+ G++   
Sbjct: 441 AYSMVITSLCRAGKLEEA 458



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 105/243 (43%), Gaps = 25/243 (10%)

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           D+  FT L   L   S+  E   LFT L   G      TY  +++GLC  G    AL L 
Sbjct: 18  DSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELV 77

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
            E++        V  P    Y+ II GLC+ +          M ++  L KM     +  
Sbjct: 78  RELSG-------VYTPTVFIYNGIITGLCRAS--------RVMDAYKVLEKMVEESIVPN 122

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
           V      +  L++GLC+ +K K+ARE+FQ + R G  PN +TY  LI+ L   G++DE  
Sbjct: 123 V----FTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEA- 177

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  +     S  L  D+ T   ++   CK  R+         +      P+ VT++
Sbjct: 178 -----LRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYS 232

Query: 399 SLI 401
           +L+
Sbjct: 233 NLV 235



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 62/135 (45%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V +++ L   L K + +     L + +   G  P+  TYN +++  CK G++     
Sbjct: 331 KPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHR 390

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   +L+S  +PD VT++ ++  L     +  A  LF  ++      D   Y+ +I  LC
Sbjct: 391 VYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLC 450

Query: 207 RTGHTIVALNLFEEM 221
           R G    A  ++  M
Sbjct: 451 RAGKLEEACGMYHGM 465



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 11/146 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++    S P V ++N +   L K+   D V  +++ +  +   PD  TY+I++N   K G
Sbjct: 359 LMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAG 418

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            +     +   I  S   PDA  ++ +I  LC   ++ EA  ++      G E+ V   N
Sbjct: 419 MLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMY-----HGMEVTVAGDN 473

Query: 200 T------LINGLCRTGHTIVALNLFE 219
                  L+  LC    T  A  + E
Sbjct: 474 ICRALAGLVAALCDAKRTDSARRIVE 499


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]
          Length = 1080

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 24/313 (7%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P   ++N+L   + K+   + +L + + ++  G      TYN +I+   K  R+     +
Sbjct: 788  PDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDL 847

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
               ++   F+P   T+  L+  L    RI +A  LF ++  +GC+ +   YN L+NG   
Sbjct: 848  YYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRI 907

Query: 208  TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
             G+T    +LF++M +          PD  +Y+ IID LCK AG  N      +  F  L
Sbjct: 908  AGNTEKVCHLFQDMVDQG------INPDIKSYTIIIDTLCK-AGQLN----DGLTYFRQL 956

Query: 268  NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             +M     L+        +  LIDGL K  +L+ A  LF  + + G++PN+ TYN LI  
Sbjct: 957  LEMGLEPDLI-------TYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILH 1009

Query: 328  LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            L   G+  E         +++ L + G  P+++TYN LI  +   G   S +  +GR++ 
Sbjct: 1010 LGKAGKAAEAGK------MYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIV 1063

Query: 388  SCFTPDAVTFTSL 400
                P++ T+  L
Sbjct: 1064 GGCLPNSSTYMQL 1076



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 140/313 (44%), Gaps = 30/313 (9%)

Query: 93   FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
            +N L   L      D    LF  +   G  PD +TYN+L++   K  R+     V   + 
Sbjct: 758  YNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMH 817

Query: 153  RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            R  +    VT+ ++I  L    R+ +A  L+  L   G      TY  L++GL + G   
Sbjct: 818  RKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIE 877

Query: 213  VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
             A NLF EM     E+G  C+ +   Y+ +++G  + AG+                K+  
Sbjct: 878  DAENLFNEML----EYG--CKANCTIYNILLNG-HRIAGNTE--------------KVCH 916

Query: 273  YFPLVRVQCL---CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
             F  +  Q +     ++  +ID LCK  +L      F+ L   GL P+++TYN+LI GL 
Sbjct: 917  LFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGL- 975

Query: 330  NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                  ++K  E    LF  +   G+ P+LYTYN LI    K G+ +    ++  +L   
Sbjct: 976  -----GKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKG 1030

Query: 390  FTPDAVTFTSLIK 402
            + P+  T+ +LI+
Sbjct: 1031 WKPNVFTYNALIR 1043



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 149/333 (44%), Gaps = 29/333 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL V+  M+ +    P V ++++L     K +  +TVL L + +   G+ P+ Y+Y I 
Sbjct: 178 EALEVYRVMM-VDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTIC 236

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I    +  R    + +L ++      PD +T T LI+ LC   RI +A  +F K++    
Sbjct: 237 IRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQ 296

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           + D  TY TL++     G +   + ++  M A+G  +       + + Y+ +ID LC + 
Sbjct: 297 KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYND-------NVVAYTAVIDALC-QV 348

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G      F  +  F  + +      +V  Q    ++  LI G  K  +   A ELF+ + 
Sbjct: 349 GRV----FEALEMFDEMKQKG----IVPEQ---YSYNSLISGFLKADRFGDALELFKHMD 397

Query: 311 RAGLMPNVVTYNILIRGLCNDGQ-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             G  PN  T+ + I      G+ +   + YE        + S G+ PD+   N ++   
Sbjct: 398 IHGPKPNGYTHVLFINYYGKSGESIKAIQRYEL-------MKSKGIVPDVVAGNAVLFGL 450

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            K GR+     +F  +     +PD +T+T +IK
Sbjct: 451 AKSGRLGMAKRVFHELKAMGVSPDTITYTMMIK 483



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 151/375 (40%), Gaps = 68/375 (18%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V S+ I    L + K +D    +  ++   G  PD  T+ +LI   C  GR+S    
Sbjct: 227 KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKD 286

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V  ++ +S   PD VT+ +L+              ++  ++  G   +V  Y  +I+ LC
Sbjct: 287 VFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALC 346

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA--GSA----------- 253
           + G    AL +F+EM     + G+V  P+  +Y+++I G  K    G A           
Sbjct: 347 QVGRVFEALEMFDEMK----QKGIV--PEQYSYNSLISGFLKADRFGDALELFKHMDIHG 400

Query: 254 ------------NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC---LIDGLCKISK 298
                       N+ G S   S  A+ +    + L++ + +  + +    ++ GL K  +
Sbjct: 401 PKPNGYTHVLFINYYGKSG-ESIKAIQR----YELMKSKGIVPDVVAGNAVLFGLAKSGR 455

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET--------------------- 337
           L +A+ +F  L   G+ P+ +TY ++I+      + DE                      
Sbjct: 456 LGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNS 515

Query: 338 --------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                      +  + +F +L    L P   TYN L+    + G+V     +   +  S 
Sbjct: 516 LIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSN 575

Query: 390 FTPDAVTFTSLIKIL 404
           + P+ +T+ +++  L
Sbjct: 576 YPPNLITYNTILDCL 590



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 156/386 (40%), Gaps = 69/386 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+AL +  Y +  +   P ++S+N +   L K + Y+   S+F ++    L PD  T   
Sbjct: 597 NDALDML-YSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDYATLCT 654

Query: 131 LINCFCKMGRVSHGFVVLGR--------------------ILRSCFTPDAVTFTS----- 165
           ++  F K+G +     ++                      IL+      ++ F       
Sbjct: 655 ILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASS 714

Query: 166 -----------LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA 214
                      LIK LC + + +EA  L  K + FG  L    YN+LI GL       +A
Sbjct: 715 GITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIA 774

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
             LF EM     E G  C PD  TY+ ++D + K       L          +++  +  
Sbjct: 775 EGLFAEMK----ELG--CGPDEFTYNLLLDAMGKSMRIEEMLKVQ-----EEMHRKGY-- 821

Query: 275 PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
                +   + +  +I GL K  +L+ A +L+ +L   G  P   TY  L+ GL   G++
Sbjct: 822 -----ESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRI 876

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           ++ ++      LF  +   G   +   YNIL+N     G       +F  ++     PD 
Sbjct: 877 EDAEN------LFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDI 930

Query: 395 VTFTSLIKIL----EIN---SFFRQV 413
            ++T +I  L    ++N   ++FRQ+
Sbjct: 931 KSYTIIIDTLCKAGQLNDGLTYFRQL 956



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 118/296 (39%), Gaps = 62/296 (20%)

Query: 88  PPVTSFN-ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           P V + N +LFG LAK+        +F  L   G+ PD  TY ++I C  K  +      
Sbjct: 438 PDVVAGNAVLFG-LAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVK 496

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   ++ +   PD +   SLI  L    R  EA  +F +L+    E    TYNTL+ GL 
Sbjct: 497 IFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLG 556

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G     ++L EEM + N        P+ ITY+TI+D LCK                 A
Sbjct: 557 REGKVKEVMHLLEEMYHSN------YPPNLITYNTILDCLCKNG---------------A 595

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +N                                 A ++  S+   G +P++ +YN +I 
Sbjct: 596 VND--------------------------------ALDMLYSMTTKGCIPDLSSYNTVIY 623

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           GL  +      + Y   F +F ++    L PD  T   ++  F KIG +     I 
Sbjct: 624 GLVKE------ERYNEAFSIFCQMKKV-LIPDYATLCTILPSFVKIGLMKEALHII 672



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 143/335 (42%), Gaps = 27/335 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +F Y L      P   ++N L   L +      V+ L + +  +   P+  TYN 
Sbjct: 527 DEAWRIF-YQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNT 585

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++C CK G V+    +L  +      PD  ++ ++I  L  E R  EA ++F +++   
Sbjct: 586 ILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVL 645

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  T  T++    + G    AL++ ++     G      + D  +  ++++G+ K+A
Sbjct: 646 IP-DYATLCTILPSFVKIGLMKEALHIIKDYFLQPG-----SKTDRSSCHSLMEGILKKA 699

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC-LIDGLCKISKLKIARELFQSL 309
           G    + F+ + + S +    F             FLC LI  LCK  K   A EL +  
Sbjct: 700 GIEKSIEFAEIIASSGITLDDF-------------FLCPLIKHLCKQKKALEAHELVKKF 746

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
              G+      YN LI GL ++  +D  +       LF  +   G  PD +TYN+L++  
Sbjct: 747 KSFGVSLKTGLYNSLICGLVDENLIDIAEG------LFAEMKELGCGPDEFTYNLLLDAM 800

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            K  R+     +   +    +    VT+ ++I  L
Sbjct: 801 GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGL 835



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 71   NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            N+ L  F  +L M    P + ++N+L   L K+K  +  +SLF  +   G+ P+ YTYN 
Sbjct: 947  NDGLTYFRQLLEM-GLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNS 1005

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            LI    K G+ +    +   +L   + P+  T+ +LI+          A A + ++ V G
Sbjct: 1006 LILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGG 1065

Query: 191  CELDVFTYNTLINGL 205
            C  +  TY  L N L
Sbjct: 1066 CLPNSSTYMQLPNQL 1080



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 103/273 (37%), Gaps = 59/273 (21%)

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N ++      GRV     V   + R     +  TF ++   L  E  +  A      ++ 
Sbjct: 94  NYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKE 153

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G  L+ +TYN L+  L ++G    AL ++  M                    ++DG+  
Sbjct: 154 AGIVLNAYTYNGLVYFLVKSGFDREALEVYRVM--------------------MVDGVV- 192

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                                     P VR       +  L+    K   ++    L + 
Sbjct: 193 --------------------------PSVRT------YSVLMVAFGKRRDVETVLWLLRE 220

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G+ PNV +Y I IR L   GQ    K ++  + +  ++ + G  PD+ T+ +LI  
Sbjct: 221 MEAHGVKPNVYSYTICIRVL---GQ---AKRFDEAYRILAKMENEGCKPDVITHTVLIQV 274

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            C  GR+S    +F ++  S   PD VT+ +L+
Sbjct: 275 LCDAGRISDAKDVFWKMKKSDQKPDRVTYITLL 307



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 15/202 (7%)

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFS 265
           R  HT  + N   E+  G+G  G + E   +    I+     +A    F   F  +    
Sbjct: 85  RVAHTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIV-----KANVGTFAAIFGGLGVEG 139

Query: 266 ALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322
            L       P+++   + LN   +  L+  L K    + A E+++ +   G++P+V TY+
Sbjct: 140 GLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYS 199

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           +L+          + +  ETV  L + + + G+ P++Y+Y I I    +  R    + I 
Sbjct: 200 VLMVAF------GKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRIL 253

Query: 383 GRILPSCFTPDAVTFTSLIKIL 404
            ++      PD +T T LI++L
Sbjct: 254 AKMENEGCKPDVITHTVLIQVL 275


>gi|147790305|emb|CAN63320.1| hypothetical protein VITISV_026425 [Vitis vinifera]
          Length = 722

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 144/317 (45%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N++   L     Y  +  L + ++   + PD +TY  L     K G+V     +
Sbjct: 326 PDIVTYNVILRELFHQDRYVEIGELLQVIDQKEISPDSFTYAALTGGLLKRGQVRVANKL 385

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  ++ +  T D   +      LC E++  EA +L   +   G      +YNT++NG CR
Sbjct: 386 LLYVISAGCTVDVAVYNIYFHCLCRENKSGEALSLLQSMVEKGLVPTNVSYNTILNGFCR 445

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
             H   AL LF+     N        PD ++++TI+   CK+  S            S +
Sbjct: 446 ENHIDEALQLFDHFEWANN------SPDVVSFNTILSAACKQGNS------------SMI 487

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            ++ +      V+   ++  CLI   C I K+    EL +S+ R GL P VVT+N+L+  
Sbjct: 488 RRVLYRMEYEGVKLNVVSSTCLIQYFCAIGKISECLELLESMIRNGLNPTVVTFNMLLDK 547

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC +G +       T   +F+   +TG FP+  +YNILI+   + G  S    +   +  
Sbjct: 548 LCKNGLLG------TAHRIFREFRNTGYFPNTTSYNILIHASIREGNDSLVEQLLRDMYS 601

Query: 388 SCFTPDAVTFTSLIKIL 404
               PDAVT+ S IK L
Sbjct: 602 WRLKPDAVTYGSFIKGL 618



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 146/332 (43%), Gaps = 29/332 (8%)

Query: 72  EALCVFDYMLNMR--PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           +++ VF++ML +   P+ P   + N+L   L+K         +F+ L   G     ++YN
Sbjct: 171 DSMSVFEFMLRLEYFPTEP---TLNLLISMLSKAGMAREAHFVFRVLLGKGCLKCAHSYN 227

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
            ++   CK G+      +L  + +     +A ++T+L+     E    EA  +  ++++ 
Sbjct: 228 PILWALCKCGQSYTALALLYSLKKMGAVHNAASYTALVYGFSKEGLWEEAFCMLDEMKID 287

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           GC+ +V TY  ++  LC  G    AL++  +M    G+ G  C+PD +TY+ I+  L  +
Sbjct: 288 GCKPNVITYTVIVKFLCDEGRIGDALDILGKM----GKEG--CDPDIVTYNVILRELFHQ 341

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                         +  + ++        +      +  L  GL K  ++++A +L   +
Sbjct: 342 ------------DRYVEIGELLQVIDQKEISPDSFTYAALTGGLLKRGQVRVANKLLLYV 389

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
             AG   +V  YNI    LC + +  E         L + +   GL P   +YN ++N F
Sbjct: 390 ISAGCTVDVAVYNIYFHCLCRENKSGE------ALSLLQSMVEKGLVPTNVSYNTILNGF 443

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           C+   +     +F     +  +PD V+F +++
Sbjct: 444 CRENHIDEALQLFDHFEWANNSPDVVSFNTIL 475



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 128/315 (40%), Gaps = 32/315 (10%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S+N +   L K     T L+L   L   G   +  +Y  L+  F K G     F +L  +
Sbjct: 225 SYNPILWALCKCGQSYTALALLYSLKKMGAVHNAASYTALVYGFSKEGLWEEAFCMLDEM 284

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 P+ +T+T ++K LC E RI +A  +  K+   GC+ D+ TYN ++  L      
Sbjct: 285 KIDGCKPNVITYTVIVKFLCDEGRIGDALDILGKMGKEGCDPDIVTYNVILRELFHQDRY 344

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
           +    L + +            PD+ TY+ +  GL K                   NK+ 
Sbjct: 345 VEIGELLQVIDQKE------ISPDSFTYAALTGGLLKR------------GQVRVANKLL 386

Query: 272 FYFP----LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            Y       V V    + F C    LC+ +K   A  L QS+   GL+P  V+YN ++ G
Sbjct: 387 LYVISAGCTVDVAVYNIYFHC----LCRENKSGEALSLLQSMVEKGLVPTNVSYNTILNG 442

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C +  +DE         LF         PD+ ++N +++  CK G  S    +  R+  
Sbjct: 443 FCRENHIDE------ALQLFDHFEWANNSPDVVSFNTILSAACKQGNSSMIRRVLYRMEY 496

Query: 388 SCFTPDAVTFTSLIK 402
                + V+ T LI+
Sbjct: 497 EGVKLNVVSSTCLIQ 511



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 127/325 (39%), Gaps = 24/325 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           +++ +   P   ++  L G L K         L   +   G   D   YNI  +C C+  
Sbjct: 353 VIDQKEISPDSFTYAALTGGLLKRGQVRVANKLLLYVISAGCTVDVAVYNIYFHCLCREN 412

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           +      +L  ++     P  V++ +++   C E+ I EA  LF          DV ++N
Sbjct: 413 KSGEALSLLQSMVEKGLVPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFN 472

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           T+++  C+ G++ +   +   M     +  VV     I Y   I  + +           
Sbjct: 473 TILSAACKQGNSSMIRRVLYRMEYEGVKLNVVSSTCLIQYFCAIGKISE----------- 521

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
           C+    ++ +     P V      + F  L+D LCK   L  A  +F+     G  PN  
Sbjct: 522 CLELLESMIRNGLN-PTV------VTFNMLLDKLCKNGLLGTAHRIFREFRNTGYFPNTT 574

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           +YNILI     +G     +       L + + S  L PD  TY   I   CK G++S   
Sbjct: 575 SYNILIHASIREGNDSLVEQ------LLRDMYSWRLKPDAVTYGSFIKGLCKEGKISVAI 628

Query: 380 VIFGRILPSCFTPDAVTFTSLIKIL 404
            +  ++L S  TP    + +++  +
Sbjct: 629 QLRDQMLESGLTPTVTIYNTILAAM 653



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 123/300 (41%), Gaps = 25/300 (8%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +   M+  +   P   S+N +     +  H D  L LF         PD  ++N +
Sbjct: 416 EALSLLQSMVE-KGLVPTNVSYNTILNGFCRENHIDEALQLFDHFEWANNSPDVVSFNTI 474

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK G  S    VL R+       + V+ T LI+  CA  +I E   L   +   G 
Sbjct: 475 LSAACKQGNSSMIRRVLYRMEYEGVKLNVVSSTCLIQYFCAIGKISECLELLESMIRNGL 534

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              V T+N L++ LC+ G    A  +F E  N  G F     P+  +Y+ +I    +E  
Sbjct: 535 NPTVVTFNMLLDKLCKNGLLGTAHRIFREFRN-TGYF-----PNTTSYNILIHASIREGN 588

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                        S + ++       R++   + +   I GLCK  K+ +A +L   +  
Sbjct: 589 D------------SLVEQLLRDMYSWRLKPDAVTYGSFIKGLCKEGKISVAIQLRDQMLE 636

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           +GL P V  YN ++  +   G     K ++ V LL K +   G  P+  +  IL     K
Sbjct: 637 SGLTPTVTIYNTILAAMFQRG-----KFWDIVSLL-KDMTMDGCEPNAVSIEILKQAMSK 690



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/358 (20%), Positives = 136/358 (37%), Gaps = 77/358 (21%)

Query: 56  RCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFN-ILFGCLAKTKHY----DTVL 110
           + + + + D  S    ++LC  + +       P V  +N +L+  L  +  +    D ++
Sbjct: 49  QLQHTMQNDAASGNLRKSLCALNSI-----RYPSVNDYNALLYHYLKSSSRHLIVLDELV 103

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
            ++  +   G +P+  T+NIL++     G +   F     + RS F P   +   ++K  
Sbjct: 104 QVYFGMKRLGPYPNASTFNILLDGMTSTGNLRAAFFFAEEMWRSGFLPSFTSLLKILKKW 163

Query: 171 CAESRIMEAAALFTKLRVFGCELDVF----TYNTLINGLCRTGHTIVALNLFEEMANGNG 226
                ++++ ++F     F   L+ F    T N LI+ L + G    A  +F  +     
Sbjct: 164 LGLGSLVDSMSVFE----FMLRLEYFPTEPTLNLLISMLSKAGMAREAHFVFRVL----- 214

Query: 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286
             G  C   A +Y+ I+  LCK           C  S++AL                   
Sbjct: 215 -LGKGCLKCAHSYNPILWALCK-----------CGQSYTAL------------------- 243

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
                             L  SL + G + N  +Y  L+ G   +G       +E  F +
Sbjct: 244 -----------------ALLYSLKKMGAVHNAASYTALVYGFSKEGL------WEEAFCM 280

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
              +   G  P++ TY +++   C  GR+     I G++      PD VT+  +++ L
Sbjct: 281 LDEMKIDGCKPNVITYTVIVKFLCDEGRIGDALDILGKMGKEGCDPDIVTYNVILREL 338


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 168/438 (38%), Gaps = 106/438 (24%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL-FPDRYTYN 129
           ++A+ +F Y + +R  +P   ++N +   L     Y+ V  L+  ++  G  FPD  TY+
Sbjct: 172 SKAVAIF-YQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYS 230

Query: 130 ILINCFCKMGRVS----------------------------------HGFVVLGRILRSC 155
            LI+ FCK+GR                                    HG + L   +R  
Sbjct: 231 ALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQ 290

Query: 156 F-TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA 214
           +  PD  T+T LI+ L    R  EA   F ++R  GC  D    N +IN L + G    A
Sbjct: 291 YCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDA 350

Query: 215 LNLFEEMA-----------------------------------NGNGEFGVVCEPDAITY 239
           + LFEEM                                     G+G       P   TY
Sbjct: 351 VKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSG-----ISPSPFTY 405

Query: 240 STIIDGLCKEAGSANFL---------GFS-CMASF----SALNKMAFY------FPLVRV 279
           S +IDG CK   +   +         GF  C A++     AL K   Y      F  ++ 
Sbjct: 406 SILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKE 465

Query: 280 QCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
            C   +   +  +I  L K  +L  A  LF  + + G  PNV  YN L+ GL   G +DE
Sbjct: 466 NCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDE 525

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                      +R+   G  PD+ +YNI++N   K G       +   +  S   PDAV+
Sbjct: 526 A------LTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVS 579

Query: 397 FTSLIKILEINSFFRQVA 414
           + +++  +     F + A
Sbjct: 580 YNTVLGAMSHAGLFEEAA 597



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 131/303 (43%), Gaps = 40/303 (13%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRS---CFTPDAVTFTSLIKDLCAESRIMEAA 180
           D  TY  LI C   + +    + ++  ++R+     TP  +  + +I+ L     I +A 
Sbjct: 118 DTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTP--MELSDIIRMLGNAKMISKAV 175

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
           A+F +++V  C+     YN++I  L   G       L+ EM+N        C PD +TYS
Sbjct: 176 AIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGH-----CFPDTVTYS 230

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMA--FYFPLVRVQCLCLNFLCLIDGLCKISK 298
            +I   CK       LG    ++   LN+M      P  ++      +  LI    K++ 
Sbjct: 231 ALISAFCK-------LGRQD-SAIRLLNEMKDNGMQPTAKI------YTMLIALFFKLNN 276

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           +  A  LF+ +      P+V TY  LIRGL   G+ DE  ++      F  +   G  PD
Sbjct: 277 VHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNF------FHEMRREGCRPD 330

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL--------EINSFF 410
               N +IN   K GR+     +F  +      P  VT+ ++IK L        EI+S+F
Sbjct: 331 TVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWF 390

Query: 411 RQV 413
            ++
Sbjct: 391 ERM 393



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 9/168 (5%)

Query: 51  QFLKERCKSSGEGDITSITP--------NEALCVFDYMLNMRPSRPPVTSFNILFGCLAK 102
           Q LKE C SS       +          ++A+ +FD M N     P V ++N L   LA+
Sbjct: 461 QELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEM-NKLGCTPNVYAYNALMSGLAR 519

Query: 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162
               D  L+  +R+   G  PD  +YNI++N   K G       +L  + +S   PDAV+
Sbjct: 520 AGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVS 579

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           + +++  +       EAA L  ++ V G E D+ TY++++  + +  H
Sbjct: 580 YNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGKVDH 627



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           + ++   L K    D  ++LF  +N  G  P+ Y YN L++   + G +      + R+ 
Sbjct: 475 YAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQ 534

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
                PD  ++  ++  L        A  + + ++    + D  +YNT++  +   G   
Sbjct: 535 EHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAG--- 591

Query: 213 VALNLFEEMANGNGEFGVVC-EPDAITYSTIIDGLCK 248
               LFEE A    E  V+  E D ITYS+I++ + K
Sbjct: 592 ----LFEEAAKLMKEMNVLGFEYDLITYSSILEAIGK 624


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 143/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G ++ GF +   + 
Sbjct: 139 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL  ++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYV 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 18/234 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  +   GL P+  T+  LI+  CK GRV     
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L    +PD +T+ +LI  LC +  + +A  L  ++ + G + D  TY TLI+G C
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSC 322

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 323 KEGDLETAFEYRKIMIKEN------IRLDDVAYTALISGLCQEGRSVD------------ 364

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
             KM      V ++     +  +I+  CK   +    +L + + R G +P+VVT
Sbjct: 365 AEKMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 29/142 (20%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-------DETKHY- 340
           +++ L K+   K+    ++     G   ++  +NIL+   C +G++       D    + 
Sbjct: 107 VLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWG 166

Query: 341 ---------------------ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                                   F L   + ++G+ PD+YTY++LIN  CK  ++    
Sbjct: 167 LRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  +L +   P+ VTFT+LI
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLI 248


>gi|414876286|tpg|DAA53417.1| TPA: hypothetical protein ZEAMMB73_373649 [Zea mays]
          Length = 561

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 158/361 (43%), Gaps = 34/361 (9%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +ALC+FD M   +  R  V  +N L     K  ++     L   +   GL P   +Y+ L
Sbjct: 104 DALCMFDRMRE-KGIRMTVYPYNSLINGYCKHNNFHQARGLLNEMVAKGLTPSPASYSPL 162

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I   C+ G ++    +   + R+  + +  TFT+LI   C +  + EA  LF K+     
Sbjct: 163 IAGLCRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKDGNMDEATRLFHKMMESSL 222

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T+N +I G CR G+   A  L+++M +          PD  TY ++I  +C   G
Sbjct: 223 VPNEVTFNVMIEGYCRVGNIRKAFQLYDQMLDRG------LTPDNYTYRSLISVVCLTLG 276

Query: 252 SANFLGF--------SCMASFSALNKMAFYFPLVRVQCLCLNFL------------CLID 291
           +     F        + + SFS    M  +      + LC   L            C +D
Sbjct: 277 AMKAKEFVADLENNCAVLNSFSLTALMHGFCKEGSAEILCKEMLAGHFLPNSYTYNCFLD 336

Query: 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351
            L    +L+ A+ L  ++   G + N VT+N LI+G C  GQ+      +    L ++  
Sbjct: 337 YLANEGELEKAKVLHAAMLE-GCLANTVTFNTLIKGFCMAGQI------QGAIDLMQKNT 389

Query: 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411
            +G FPD  +Y+ +IN  CK+G  +  F ++  +L     PD V +T LI+   I+  F 
Sbjct: 390 ESGFFPDCISYSTIINELCKVGDTNKAFELWNEMLYKGLKPDIVAYTILIRWCNIHGEFD 449

Query: 412 Q 412
           +
Sbjct: 450 K 450



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 119/267 (44%), Gaps = 26/267 (9%)

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G +   F + G+  +     + +   + I  L  + R  EA  LF  +   G + +  TY
Sbjct: 30  GHIHKSFRLTGQNCKLGIVANLLACNAWIDRLGKDGRYREAEKLFRGMADRGLDPNEVTY 89

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG- 257
             LI+ LC+ G    AL +F+ M     E G+        Y+++I+G CK        G 
Sbjct: 90  AILIHSLCKRGMMEDALCMFDRMR----EKGI--RMTVYPYNSLINGYCKHNNFHQARGL 143

Query: 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN 317
            + M +       A Y P             LI GLC+   L  A EL + + R  +  N
Sbjct: 144 LNEMVAKGLTPSPASYSP-------------LIAGLCRKGDLASAMELHREMTRNAVSGN 190

Query: 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377
           V T+  LI G C DG MDE         LF ++  + L P+  T+N++I  +C++G +  
Sbjct: 191 VYTFTALISGFCKDGNMDEATR------LFHKMMESSLVPNEVTFNVMIEGYCRVGNIRK 244

Query: 378 GFVIFGRILPSCFTPDAVTFTSLIKIL 404
            F ++ ++L    TPD  T+ SLI ++
Sbjct: 245 AFQLYDQMLDRGLTPDNYTYRSLISVV 271



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 130/300 (43%), Gaps = 34/300 (11%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +F  L     K  + D    LF ++  + L P+  T+N++I  +C++G +   F +  
Sbjct: 191 VYTFTALISGFCKDGNMDEATRLFHKMMESSLVPNEVTFNVMIEGYCRVGNIRKAFQLYD 250

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
           ++L    TPD  T+ SLI  +C     M+A      L      L+ F+   L++G C+ G
Sbjct: 251 QMLDRGLTPDNYTYRSLISVVCLTLGAMKAKEFVADLENNCAVLNSFSLTALMHGFCKEG 310

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
              +   L +EM  G+        P++ TY+  +D L  E                 L K
Sbjct: 311 SAEI---LCKEMLAGH------FLPNSYTYNCFLDYLANEG---------------ELEK 346

Query: 270 MAFYFPLVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                  +   CL   + F  LI G C   +++ A +L Q    +G  P+ ++Y+ +I  
Sbjct: 347 AKVLHAAMLEGCLANTVTFNTLIKGFCMAGQIQGAIDLMQKNTESGFFPDCISYSTIINE 406

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI-GRVSSGFVIFGRIL 386
           LC  G  D  K +E    L+  +   GL PD+  Y ILI  +C I G    G  I+  ++
Sbjct: 407 LCKVG--DTNKAFE----LWNEMLYKGLKPDIVAYTILIR-WCNIHGEFDKGLGIYSDMV 459



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 135/363 (37%), Gaps = 62/363 (17%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N     L K   Y     LF+ +   GL P+  TY ILI+  CK G +     +  R+  
Sbjct: 55  NAWIDRLGKDGRYREAEKLFRGMADRGLDPNEVTYAILIHSLCKRGMMEDALCMFDRMRE 114

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
                    + SLI   C  +   +A  L  ++   G      +Y+ LI GLCR G    
Sbjct: 115 KGIRMTVYPYNSLINGYCKHNNFHQARGLLNEMVAKGLTPSPASYSPLIAGLCRKGDLAS 174

Query: 214 ALNLFEEMA--------------------NGNGE-----FGVVCE----PDAITYSTIID 244
           A+ L  EM                     +GN +     F  + E    P+ +T++ +I+
Sbjct: 175 AMELHREMTRNAVSGNVYTFTALISGFCKDGNMDEATRLFHKMMESSLVPNEVTFNVMIE 234

Query: 245 GLCKEAG-SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL---------------- 287
           G C+       F  +  M           Y  L+ V CL L  +                
Sbjct: 235 GYCRVGNIRKAFQLYDQMLDRGLTPDNYTYRSLISVVCLTLGAMKAKEFVADLENNCAVL 294

Query: 288 ------CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
                  L+ G CK    +I   L + +     +PN  TYN  +  L N+G++++ K   
Sbjct: 295 NSFSLTALMHGFCKEGSAEI---LCKEMLAGHFLPNSYTYNCFLDYLANEGELEKAKVLH 351

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              L        G   +  T+N LI  FC  G++     +  +   S F PD ++++++I
Sbjct: 352 AAML-------EGCLANTVTFNTLIKGFCMAGQIQGAIDLMQKNTESGFFPDCISYSTII 404

Query: 402 KIL 404
             L
Sbjct: 405 NEL 407


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 164/393 (41%), Gaps = 66/393 (16%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGD+     N+A  +F  M+  R   P + +++ +   L K +  D   +  +++   G+
Sbjct: 234 EGDV-----NKACDLFKEMVQ-RGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 287

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD +TYN LI  +   G+      V   + R    PD V   +L+  LC   +I EA  
Sbjct: 288 LPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARD 347

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC--------- 232
           +F  + + G   DVF+Y  ++NG    G  +   +LF+ M  G+G   V+C         
Sbjct: 348 VFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLML-GDGIAPVICTFNVLIKAY 406

Query: 233 ---------------------EPDAITYSTIIDGLCKEAGSANFL-GFSCMASFSALNKM 270
                                +P  +TY T+I  LC+     + +  F+ M     +   
Sbjct: 407 ANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDK 466

Query: 271 AFYFPLVRVQCLCLNFL----------------------CLIDGLCKISKLKIARELFQS 308
             Y  L++  C   + L                       +I+ LCK+ ++  A+ +F  
Sbjct: 467 YAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDL 526

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
               GL P+ V YN+L+ G C  G+M      E    +F  + S G+ P++  Y  L+N 
Sbjct: 527 TVNVGLHPDAVVYNMLMDGYCLVGKM------EKALRVFDAMVSAGIEPNVVGYGTLVNG 580

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +CKIGR+  G  +F  +L     P  + +  +I
Sbjct: 581 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIII 613



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 124/282 (43%), Gaps = 23/282 (8%)

Query: 121 LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA- 179
           L P  YTY IL++C  +  R        G++LR+    DA+  + L+K  C   R  EA 
Sbjct: 109 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 168

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L  +    GC  DVF+YN L+  LC  G +  A +L   MA G    G VC PD + Y
Sbjct: 169 DILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEG----GTVCSPDVVAY 224

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           +T+IDG  KE G  N         F  + +      LV        +  ++  LCK   +
Sbjct: 225 NTVIDGFFKE-GDVN----KACDLFKEMVQRGIPPDLV-------TYSSVVHALCKARAM 272

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A    + +   G++P+  TYN LI G  + GQ  E         +FK +    + PD+
Sbjct: 273 DKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVR------VFKEMRRQSILPDV 326

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              N L+   CK G++     +F  +      PD  ++T ++
Sbjct: 327 VALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIML 368



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 151/356 (42%), Gaps = 50/356 (14%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD ML    + P + +FN+L    A     D  + +F  +   G+ P   TY  +I   
Sbjct: 383 LFDLMLGDGIA-PVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAAL 441

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C++G++        +++     PD   +  LI+  C    +++A  L +++   G  LD+
Sbjct: 442 CRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDI 501

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             + ++IN LC+ G  + A N+F+   N      V   PDA+ Y+ ++DG C        
Sbjct: 502 VFFGSIINNLCKLGRVMDAQNIFDLTVN------VGLHPDAVVYNMLMDGYCLVGKMEKA 555

Query: 256 LG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
           L  F  M S               ++   + +  L++G CKI ++     LF+ + + G+
Sbjct: 556 LRVFDAMVSAG-------------IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGI 602

Query: 315 MPNVVTYNILIRGLCNDG----------QMDET-------------------KHYETVFL 345
            P+ + YNI+I GL   G          +M E+                   + ++    
Sbjct: 603 KPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIF 662

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LFK L +  +  D+ T N +I    +  RV     +F  I  S   P AVT++ +I
Sbjct: 663 LFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMI 718



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 150/346 (43%), Gaps = 44/346 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF-V 146
           P   ++ IL  C  +    +  L+ F +L  TGL  D    + L+  FC+  R      +
Sbjct: 111 PTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDI 170

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG--CELDVFTYNTLING 204
           +L R       PD  ++  L+K LC + +  +A  L   +   G  C  DV  YNT+I+G
Sbjct: 171 LLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDG 230

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG---SANFL----- 256
             + G    A +LF+EM     + G+   PD +TYS+++  LCK      +  FL     
Sbjct: 231 FFKEGDVNKACDLFKEMV----QRGI--PPDLVTYSSVVHALCKARAMDKAEAFLRQMVN 284

Query: 257 ---------------GFSCMASFSALNKMAFYFPLVRVQCLCLNFLC---LIDGLCKISK 298
                          G+S    +    ++   F  +R Q +  + +    L+  LCK  K
Sbjct: 285 KGVLPDNWTYNNLIYGYSSTGQWKEAVRV---FKEMRRQSILPDVVALNTLMGSLCKYGK 341

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           +K AR++F ++   G  P+V +Y I++ G    G + +         LF  +   G+ P 
Sbjct: 342 IKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTD------LFDLMLGDGIAPV 395

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + T+N+LI  +   G +    +IF  +      P  VT+ ++I  L
Sbjct: 396 ICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAAL 441



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 164/394 (41%), Gaps = 77/394 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F+ M +    +P V ++  +   L +    D  +  F ++   G+ PD+Y Y+ 
Sbjct: 413 DKAMIIFNEMRD-HGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHC 471

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF------- 183
           LI  FC  G +     ++  I+ +    D V F S+I +LC   R+M+A  +F       
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVG 531

Query: 184 ----------------------TKLRVF------GCELDVFTYNTLINGLCRTGHTIVAL 215
                                   LRVF      G E +V  Y TL+NG C+ G     L
Sbjct: 532 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 591

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS---ANFLGFSCMASFSALNKMAF 272
           +LF EM           +P  I Y+ IIDGL  EAG    A         S  A+NK  +
Sbjct: 592 SLFREMLQKG------IKPSTILYNIIIDGLF-EAGRTVPAKVKFHEMTESGIAMNKCTY 644

Query: 273 YFPL-----------------------VRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              L                       V++  + LN   +I G+ +  +++ A++LF S+
Sbjct: 645 SIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLN--TMIAGMFQTRRVEEAKDLFASI 702

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            R+GL+P  VTY+I+I  L  +G ++E +       +F  + + G  PD    N ++   
Sbjct: 703 SRSGLVPCAVTYSIMITNLIKEGLVEEAED------MFSSMQNAGCEPDSRLLNHVVREL 756

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
            K   +        +I    F+ + +T   L+ +
Sbjct: 757 LKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDL 790


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 163/378 (43%), Gaps = 67/378 (17%)

Query: 83  MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142
           MR + P + ++ ++     + +  +  L+ F RL  TGL  D+   N ++ C C   R  
Sbjct: 1   MRVAPPTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTD 60

Query: 143 HGF-VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG-----CELDVF 196
               V+L R+      PDA ++  ++K LC ++R  +A  L   LR+       C  DV 
Sbjct: 61  DAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDL---LRMMAKEEGVCSPDVV 117

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN-- 254
           TYNT+I+G  + G    A NL+ EM     + G V  PD +T+++II+ LCK     N  
Sbjct: 118 TYNTVIHGFFKEGKIGKACNLYHEMM----QQGFV--PDVVTHNSIINALCKARAVDNAE 171

Query: 255 ---------------------FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGL 293
                                  G+S +  +    KM        +    +++   +D L
Sbjct: 172 LLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSL 231

Query: 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY------------- 340
           CK  + K A E+F S+   G  PN+VTY IL+ G   +G   +   +             
Sbjct: 232 CKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANC 291

Query: 341 ----------------ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
                           +   L+   +   GL PD++TY+ LI+  C++GR++     F +
Sbjct: 292 LVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQ 351

Query: 385 ILPSCFTPDAVTFTSLIK 402
           ++ +   P+ V + SLI+
Sbjct: 352 MIGTGVQPNTVVYHSLIQ 369



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 149/337 (44%), Gaps = 34/337 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +     K        +L+  +   G  PD  T+N +IN  CK   V +  ++
Sbjct: 114 PDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELL 173

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L +++ +   P+ VT+TS+I       R  EA  +F ++   G   D+ ++N+ ++ LC+
Sbjct: 174 LRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCK 233

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF--------- 258
            G +  A  +F  MA   G       P+ +TY  ++ G   E   A+ + F         
Sbjct: 234 HGRSKEAAEIFYSMA-AKGH-----RPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGI 287

Query: 259 --SCM---------ASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISKLKIARE 304
             +C+         A    +++       ++ Q L      +  LI  LC++ +L  A +
Sbjct: 288 VANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVD 347

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
            F  +   G+ PN V Y+ LI+G C  G + + K      L+++ +N+    P++  +N 
Sbjct: 348 KFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKE-----LVYEMMNNGIPRPNIAFFNS 402

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +++  CK GRV     IF  +       D + F +LI
Sbjct: 403 IVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLI 439



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 160/370 (43%), Gaps = 38/370 (10%)

Query: 38  TLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILF 97
           T R  + D  S   F+   CK             EA  +F Y +  +  RP + ++ IL 
Sbjct: 213 TGRGLIPDIVSWNSFMDSLCKHG--------RSKEAAEIF-YSMAAKGHRPNIVTYGILL 263

Query: 98  GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 157
              A    +  ++S F  +   G+  +   + ILI+ + K G +    ++L  +     +
Sbjct: 264 HGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLS 323

Query: 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217
           PD  T+++LI  LC   R+ +A   F ++   G + +   Y++LI G C  G  + A  L
Sbjct: 324 PDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKEL 383

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277
             EM N NG    +  P+   +++I+  +CKE                 +      F LV
Sbjct: 384 VYEMMN-NG----IPRPNIAFFNSIVHSICKEG---------------RVMDAHHIFDLV 423

Query: 278 R---VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334
           +    +   + F  LIDG C + ++  A  +  ++  AG+ P+  TYN L+ G    G++
Sbjct: 424 KDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRI 483

Query: 335 DETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394
           D+  +      LF+ ++   + P   TYNI+++   + GR  +   +   ++    T   
Sbjct: 484 DDGLN------LFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSL 537

Query: 395 VTFTSLIKIL 404
            T+  ++K L
Sbjct: 538 PTYNIILKGL 547



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 146/377 (38%), Gaps = 83/377 (22%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           F IL    AK    D  + +   +   GL PD +TY+ LI+  C+MGR++       +++
Sbjct: 294 FTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMI 353

Query: 153 RSCFTPDAVTFTSLIK------------------------------------DLCAESRI 176
            +   P+ V + SLI+                                     +C E R+
Sbjct: 354 GTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRV 413

Query: 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236
           M+A  +F  ++  G   D+  +NTLI+G C  G    A ++ + M +          PD 
Sbjct: 414 MDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAG------IGPDT 467

Query: 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296
            TY+T+++G  K     + L       F  ++         +++   + +  ++DGL + 
Sbjct: 468 FTYNTLVNGYFKSGRIDDGLNL-----FREMSDK-------KIKPTTVTYNIILDGLFRA 515

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET------------------- 337
            +   A+++   +   G   ++ TYNI+++GLC +   DE                    
Sbjct: 516 GRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTL 575

Query: 338 ----------KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
                     +  E    LF  ++ +GL P+  TY I+I    K G V     +F  +  
Sbjct: 576 NTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEK 635

Query: 388 SCFTPDAVTFTSLIKIL 404
           S   P +      I+ L
Sbjct: 636 SGCAPCSRLLNDTIRTL 652



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 114/286 (39%), Gaps = 60/286 (20%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  +FD + ++   R  +  FN L              S+   +   G+ PD +TYN L
Sbjct: 415 DAHHIFDLVKDI-GERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTL 473

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +N + K GR+  G  +   +      P  VT+  ++  L    R + A  +  ++   G 
Sbjct: 474 VNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGT 533

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            + + TYN ++ GLCR   T  A+ +F+++   N +F +                     
Sbjct: 534 TVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNI--------------------- 572

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                        + LN M                   I+ +  + + + A++LF ++  
Sbjct: 573 -------------TTLNTM-------------------INSMYTVQRREEAKDLFSAISD 600

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
           +GL+PN  TY I+IR L  +G ++E  +      +F  +  +G  P
Sbjct: 601 SGLVPNASTYGIMIRNLLKEGSVEEADN------MFSSMEKSGCAP 640



 Score = 41.6 bits (96), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 55/130 (42%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++NI+   L +    D  + +F++L    +  +  T N +IN    + R      +   I
Sbjct: 539 TYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAI 598

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
             S   P+A T+  +I++L  E  + EA  +F+ +   GC       N  I  L   G  
Sbjct: 599 SDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTLLEKGEI 658

Query: 212 IVALNLFEEM 221
           + A N   ++
Sbjct: 659 VKAGNYMSKV 668



 Score = 38.1 bits (87), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 1/116 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ +F  +  M   +  +T+ N +   +   +  +    LF  ++ +GL P+  TY I
Sbjct: 554 DEAIVMFQKLCTMN-VKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGI 612

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           +I    K G V     +   + +S   P +      I+ L  +  I++A    +K+
Sbjct: 613 MIRNLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTLLEKGEIVKAGNYMSKV 668


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 143/351 (40%), Gaps = 49/351 (13%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           + M+   P V ++  +   L +      + SL   +   GL P+   YN +I   CK   
Sbjct: 337 MEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRS 396

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
            S    VL +++ S F PD VTF +LI   C E  + EA  L  +      E +  +Y  
Sbjct: 397 ASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTP 456

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGE-----------FGVVCE---------------- 233
           LI+G C  G  +VA +L  EM  G G             G+V                  
Sbjct: 457 LIHGFCVRGEVMVASDLLVEMI-GRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAER 515

Query: 234 ---PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290
              PDA  Y+ +I GLCK+               SA   +       +VQ     +  LI
Sbjct: 516 QVMPDANIYNVLISGLCKK------------RMLSAAKNLLVEMLEQKVQPDKFVYTTLI 563

Query: 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRL 350
           DG  +  KL  AR++F+ +   G   ++V YN +I+G C  G M+E        +    +
Sbjct: 564 DGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEA------VMCMSSM 617

Query: 351 NSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              G  PD +TY  LI+ + K G + +       ++     P+ VT+ SLI
Sbjct: 618 RKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLI 668



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 152/359 (42%), Gaps = 36/359 (10%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           + ++AL V + M+  R   P V +FN L     +    +  L L +      L P++ +Y
Sbjct: 396 SASQALAVLNQMVASRFD-PDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSY 454

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
             LI+ FC  G V     +L  ++    TPD VT  +LI  L    ++ EA  +  K+  
Sbjct: 455 TPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAE 514

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
                D   YN LI+GLC+      A NL  EM           +PD   Y+T+IDG  +
Sbjct: 515 RQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQK------VQPDKFVYTTLIDGFIR 568

Query: 249 EAGSAN------FL----GFSCMASFSALNKMAFYFPLVRVQCLCLN------------- 285
               ++      F+    G+  + +++A+ K      ++    +C++             
Sbjct: 569 SDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFT 628

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  LIDG  K   +K A      + +    PN+VTY  LI G CN G  D  +      +
Sbjct: 629 YTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAE------V 682

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           LF  + S GLFP++  Y +LI    K  +       F  +L +  +P+  T   L+  L
Sbjct: 683 LFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGL 741



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 129/282 (45%), Gaps = 24/282 (8%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G  P    YN+LI+ +C+ G V  G ++LG +      P  VT+ ++I  L  +S + + 
Sbjct: 306 GCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKI 365

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
            +L  +++  G   +V  YNT+I  LC+      AL +  +M           +PD +T+
Sbjct: 366 ESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASR------FDPDVVTF 419

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           +T+I   C+E      L          L + A    L   Q   L++  LI G C   ++
Sbjct: 420 NTLIAAFCREGDVEEAL---------KLLREAIRRELEPNQ---LSYTPLIHGFCVRGEV 467

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
            +A +L   +   G  P+VVT   LI GL   GQ+DE        ++ +++    + PD 
Sbjct: 468 MVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEA------LMVREKMAERQVMPDA 521

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             YN+LI+  CK   +S+   +   +L     PD   +T+LI
Sbjct: 522 NIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLI 563



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 153/407 (37%), Gaps = 76/407 (18%)

Query: 51  QFLKERCKSSGEGDITSITP--------NEALCVFDYMLNM--RPSRPPVTSFNILFGCL 100
           + L+E  +   E +  S TP         E +   D ++ M  R   P V +   L   L
Sbjct: 437 KLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGL 496

Query: 101 AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 160
             +   D  L + +++    + PD   YN+LI+  CK   +S    +L  +L     PD 
Sbjct: 497 VVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDK 556

Query: 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220
             +T+LI       ++ +A  +F  +   G   D+  YN +I G C++G    A+     
Sbjct: 557 FVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSS 616

Query: 221 MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQ 280
           M        V C PD  TY+T+IDG  K+      L F C               +++ +
Sbjct: 617 MRK------VGCIPDEFTYTTLIDGYAKKGDIKAALRFLC--------------DMMKRR 656

Query: 281 CL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL---------- 328
           C    + +  LI G C I     A  LF S+   GL PNVV Y +LI  L          
Sbjct: 657 CKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAA 716

Query: 329 ------------CNDGQM----------------------DETKHYETVFLLFKRLNSTG 354
                        ND  M                      D+      +  +FK L S G
Sbjct: 717 AYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDG 776

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           L P +  YN +I   C+   +     +  ++      PD VTF SL+
Sbjct: 777 LDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLL 823



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 147/371 (39%), Gaps = 57/371 (15%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
            G + S   +EAL V + M   R   P    +N+L   L K +      +L   +    +
Sbjct: 494 HGLVVSGQVDEALMVREKMAE-RQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKV 552

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD++ Y  LI+ F +  ++S    +   +       D V + ++IK  C    + EA  
Sbjct: 553 QPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVM 612

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
             + +R  GC  D FTY TLI+G  + G    AL    +M          C+P+ +TY++
Sbjct: 613 CMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRR------CKPNIVTYAS 666

Query: 242 IIDGLCK--EAGSANFLGFSCMASFS--------------------ALNKMAFYFPLVRV 279
           +I G C      SA  L F+ M S                      A+   A++  ++  
Sbjct: 667 LICGYCNIGNTDSAEVL-FASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLN 725

Query: 280 QC----LCLNFLC---------LIDGLC----KISKLKIARELFQSLPRAGLMPNVVTYN 322
            C      +++L          +I+  C    +  K     ++F+ L   GL P +  YN
Sbjct: 726 HCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDGLDPRISAYN 785

Query: 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
            +I  LC    + +         L +++++ G  PD  T+  L+  F  +G+       +
Sbjct: 786 AIIFSLCRHNMLGKAME------LKEKMSNKGCLPDPVTFLSLLYGFSSVGKSGK----W 835

Query: 383 GRILPSCFTPD 393
              LP+ F  D
Sbjct: 836 RSALPNEFQQD 846


>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1163

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 158/341 (46%), Gaps = 28/341 (8%)

Query: 69  TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDT----VLSLFKRLNLTGLFPD 124
           TP++AL  F++   +  +    + F ++   L + ++ +     + S+ +R N T    D
Sbjct: 98  TPSKALQFFNWAPELGFTHNDQSYF-LMLEILGRARNLNVARNFLFSIKRRSNGTVKLED 156

Query: 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184
           R+ +N LI  + K G       V   +     +P  VTF SL+  L    R   A ++F 
Sbjct: 157 RF-FNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFD 215

Query: 185 K-LRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
           + L  +G   D +T+N LI G C+          F+EM+         C+PD +TY+T++
Sbjct: 216 EMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSR------FKCDPDLVTYNTLV 269

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           DGLC+ AG  N        + + +N M        +    + +  L+ G C   ++  A 
Sbjct: 270 DGLCR-AGKVNI-------AHNVVNGMVK--KSTNLNPDVVTYTTLVRGYCMKHEIDEAL 319

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
            +F+ +   GL PN +TYN LI+GLC   ++D+ K      +    L   G  PD  T N
Sbjct: 320 VVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQ-----IFEGALGGGGFIPDTCTLN 374

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            L+N  C  G ++    +F +++     PD+ T++ LI+ L
Sbjct: 375 TLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRNL 415



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 157/367 (42%), Gaps = 46/367 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A  VFD ML+     P   +FNIL     K    D     FK ++     PD  TYN 
Sbjct: 208 NMAQSVFDEMLSTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNT 267

Query: 131 LINCFCKMGRVSHGF-VVLGRILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           L++  C+ G+V+    VV G + +S    PD VT+T+L++  C +  I EA  +F ++  
Sbjct: 268 LVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVS 327

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G + +  TYNTLI GLC          +FE    G G       PD  T +T+++  C 
Sbjct: 328 KGLKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFI-----PDTCTLNTLMNAHCN 382

Query: 249 EAGSAN--FLGFSCMASFSALNKMAFYFPLVRVQCLCLNF---------------LCLID 291
            AG+ N     F  M   +     A Y  L+R  C   NF               L   D
Sbjct: 383 -AGNLNDALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDELSEKEILLRDD 441

Query: 292 G--------------LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
           G              LC+  K   A  +F+ L + G   + +++ ILI+G C +G  +  
Sbjct: 442 GCTPLVAAYKSMFEFLCRNGKTAKAERVFRQLMKRGTQ-DPLSFKILIKGHCREGTFEAG 500

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
             YE + L+ +R       PDL TY  LI+   + G     +    +++ S   P+  TF
Sbjct: 501 --YELLVLMLRR----DFVPDLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTF 554

Query: 398 TSLIKIL 404
            S++  L
Sbjct: 555 HSILARL 561



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 26/296 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FN L     K   +   + +F  +   G+ P   T+N L+    K GR +    V   +L
Sbjct: 159 FNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEML 218

Query: 153 RS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            +   TPD  TF  LI+  C  S + E    F ++  F C+ D+ TYNTL++GLCR G  
Sbjct: 219 STYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKV 278

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-KEAGSANFLGFSCMASFSALNKM 270
            +A N+     NG  +      PD +TY+T++ G C K       + F  M S       
Sbjct: 279 NIAHNV----VNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKG----- 329

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ-SLPRAGLMPNVVTYNILIRGLC 329
                   ++   + +  LI GLC++ K+   +++F+ +L   G +P+  T N L+   C
Sbjct: 330 --------LKPNEITYNTLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHC 381

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
           N G +++         +F+++    + PD  TY++LI   C+ G       +F  +
Sbjct: 382 NAGNLND------ALEVFEKMMVLNVRPDSATYSVLIRNLCQRGNFERAEQLFDEL 431


>gi|242090439|ref|XP_002441052.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
 gi|241946337|gb|EES19482.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
          Length = 548

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 153/336 (45%), Gaps = 29/336 (8%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY-DTVLSLFKRLNLTGLFPDRYTY 128
           P  AL V + M       P   +  +L G  A   H+ D    + + +   G+ PD  TY
Sbjct: 113 PGAALAVLNAM-AADGVVPDTAACTVLVGVYACRLHWFDAAYEVVRWMAANGVAPDVVTY 171

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           + LI+  C  GRV+    VL  +L     P+A T+T ++   C    I EA  L   +  
Sbjct: 172 STLISGLCSAGRVAEALGVLDLMLEEGCQPNAHTYTPILHAYCTSGMIHEAKDLLETMVA 231

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G      TYN L+  LC+         L EE ++  G       PD ITYST +DGLCK
Sbjct: 232 AGFAPSTATYNVLVEALCKACAFEEVDKLLEE-SSAKG-----WTPDTITYSTYMDGLCK 285

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
             G  +        S + ++KM      +R   + LN   L+DG+C+ S    A+ L + 
Sbjct: 286 N-GRVD-------KSLALVDKMLSVG--LRPNEITLNI--LLDGVCRRSTAWAAKCLLEC 333

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
               G   NVV YN ++R LC++      + +  V  LF  +   G+ P+ +T++I+I+ 
Sbjct: 334 SAEIGWHVNVVNYNTVMRRLCDE------RRWLAVVKLFVDMVKKGIAPNSWTFSIVIHS 387

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            CK+G++     + G      F  + VT+ +LI+ L
Sbjct: 388 LCKLGKLHEALCLLG---SEEFVANVVTYNTLIRHL 420



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 128/311 (41%), Gaps = 44/311 (14%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N+L   L K   ++ V  L +  +  G  PD  TY+  ++  CK GRV     +
Sbjct: 236 PSTATYNVLVEALCKACAFEEVDKLLEESSAKGWTPDTITYSTYMDGLCKNGRVDKSLAL 295

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + ++L     P+ +T   L+  +C  S    A  L       G  ++V  YNT++  LC 
Sbjct: 296 VDKMLSVGLRPNEITLNILLDGVCRRSTAWAAKCLLECSAEIGWHVNVVNYNTVMRRLCD 355

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-----EA----GSA----- 253
               +  + LF +M       G+   P++ T+S +I  LCK     EA    GS      
Sbjct: 356 ERRWLAVVKLFVDMVKK----GIA--PNSWTFSIVIHSLCKLGKLHEALCLLGSEEFVAN 409

Query: 254 -----------NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA 302
                      NFLG SC A +  L++M        +    + +  LID LCK  K  +A
Sbjct: 410 VVTYNTLIRHLNFLGKSCEA-YLLLHEMIEK----GIAPNDITYSLLIDCLCKEGKFLVA 464

Query: 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362
                     GL    V+   ++RGL   G++ E +       L   +   G   D+Y Y
Sbjct: 465 LSCLNQCIEGGLSKAAVSS--ILRGLIAGGKLRELQ------ALIGWILGQGFIIDVYMY 516

Query: 363 NILINCFCKIG 373
             LI  FCK G
Sbjct: 517 QELIISFCKKG 527



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           L   +   G+ P+  TY++LI+C CK G+       L + +    +  AV  +S+++ L 
Sbjct: 432 LLHEMIEKGIAPNDITYSLLIDCLCKEGKFLVALSCLNQCIEGGLSKAAV--SSILRGLI 489

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           A  ++ E  AL   +   G  +DV+ Y  LI   C+ G+
Sbjct: 490 AGGKLRELQALIGWILGQGFIIDVYMYQELIISFCKKGY 528


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 148/334 (44%), Gaps = 31/334 (9%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +F+ ML+      P+   +++       +  D    ++K +   G  PD    N 
Sbjct: 472 DDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDG-HKIYKEMIRRGGRPDLTLLNT 530

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            ++C  K G V  G  +   +    F PD  +++ LI  L    +  E + +F  +   G
Sbjct: 531 YMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQG 590

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
             LD   YN +++GLC++G    A  + EEM   +        P   TY +I+DGL K  
Sbjct: 591 FALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKH------VHPTVATYGSIVDGLAK-- 642

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL---CLIDGLCKISKLKIARELFQ 307
                           L++    F   + + + LN +    LIDG  K+ ++  A  + +
Sbjct: 643 -------------IDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILE 689

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            + + GL PNV T+N L+  L    ++DE        + F+ +      P+ YTY+ILIN
Sbjct: 690 EMMKKGLTPNVYTWNSLMDALVKTEEIDEA------LICFQSMKEMKCSPNTYTYSILIN 743

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             C++ + +  FV +  +      P+ VT+T++I
Sbjct: 744 GLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMI 777



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 162/365 (44%), Gaps = 53/365 (14%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL +FD M   + ++P ++++NI+   L      +    +   + L GLFP+  + NI
Sbjct: 368 DEALTLFDVM--KKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNI 425

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++  CK  ++     +          P++VT+ SLI  L  + +I +A  LF K+   G
Sbjct: 426 MVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAG 485

Query: 191 CELDVFTYNTLI-----NGLCRTGHTIVA-------------LNLFEEMANGNGE----- 227
            + +   Y +LI     +G    GH I               LN + +     GE     
Sbjct: 486 HDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGR 545

Query: 228 --------FGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
                   FG +  PD  +YS +I GL K AG A          F A+++  F       
Sbjct: 546 AIFEDMKSFGFL--PDVRSYSILIHGLTK-AGQAR----ETSNIFQAMSQQGFALD---- 594

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                 +  ++DGLCK  K+  A E+ + +    + P V TY  ++ GL    ++DE   
Sbjct: 595 ---ARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEA-- 649

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
               ++LF+   S G+  ++  Y+ LI+ F K+GR+   ++I   ++    TP+  T+ S
Sbjct: 650 ----YMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNS 705

Query: 400 LIKIL 404
           L+  L
Sbjct: 706 LMDAL 710



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 143/322 (44%), Gaps = 30/322 (9%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R  RP +T  N    C+ K    +   ++F+ +   G  PD  +Y+ILI+   K G+   
Sbjct: 519 RGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARE 578

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
              +   + +  F  DA  + +++  LC   ++ +A  +  +++V      V TY ++++
Sbjct: 579 TSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVD 638

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMAS 263
           GL +      A  LFEE  +   E  V      I YS++IDG  K               
Sbjct: 639 GLAKIDRLDEAYMLFEEAKSKGIELNV------ILYSSLIDGFGK--------------- 677

Query: 264 FSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320
              +++       +  + L  N   +  L+D L K  ++  A   FQS+      PN  T
Sbjct: 678 VGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYT 737

Query: 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFV 380
           Y+ILI GLC        + Y   F+ ++ +   GL P++ TY  +I+   K+G ++  + 
Sbjct: 738 YSILINGLCR------VQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYS 791

Query: 381 IFGRILPSCFTPDAVTFTSLIK 402
           +F R   +   PD+ +F +LI+
Sbjct: 792 LFERFKTNGGIPDSASFNALIE 813



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 131/296 (44%), Gaps = 26/296 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V S++IL   L K        ++F+ ++  G   D   YN +++  CK G+V   + V
Sbjct: 558 PDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEV 617

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P   T+ S++  L    R+ EA  LF + +  G EL+V  Y++LI+G  +
Sbjct: 618 LEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGK 677

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-EAGSANFLGFSCMASFSA 266
            G    A  + EEM            P+  T+++++D L K E      + F  M     
Sbjct: 678 VGRIDEAYLILEEMMKKG------LTPNVYTWNSLMDALVKTEEIDEALICFQSMKE--- 728

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                     ++       +  LI+GLC++ K   A   +Q + + GL+PNVVTY  +I 
Sbjct: 729 ----------MKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMIS 778

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           GL   G + +       + LF+R  + G  PD  ++N LI       R    + +F
Sbjct: 779 GLAKVGNITDA------YSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVF 828



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 142/349 (40%), Gaps = 52/349 (14%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P +  +N+   C  K    D     F  L   GL PD  +Y  ++   CK GR+     
Sbjct: 243 EPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEE 302

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           + G++      P A  + ++I    +  R  +A  L  +LR  GC   V ++N+++  L 
Sbjct: 303 LFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLG 362

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      AL LF+ M           +P+  TY+ IID LC  AG  N        ++  
Sbjct: 363 KKRKVDEALTLFDVMKKD-------AKPNISTYNIIIDMLCM-AGRVN-------EAYKI 407

Query: 267 LNKM--AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            ++M  A  FP      L +N   ++D LCK ++L+ A  +F+S    G  PN VTY  L
Sbjct: 408 RDEMELAGLFP----NLLSVNI--MVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSL 461

Query: 325 IRGLCNDGQMDET-----------------------------KHYETVFLLFKRLNSTGL 355
           I GL   G++D+                                 E    ++K +   G 
Sbjct: 462 IDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGG 521

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            PDL   N  ++C  K G V  G  IF  +    F PD  +++ LI  L
Sbjct: 522 RPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGL 570



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 180/430 (41%), Gaps = 79/430 (18%)

Query: 23  SSISENEPSYPTT-TATLRLTVKDRASLEQFLKE-----------RCKSSGEGDITSITP 70
           +S S ++P  P    A L     D A+LE+ L+E            C +     + S   
Sbjct: 98  ASASSSQPLPPDAYNAVLPFLSHDLAALEKVLEEMSHLGYGLPNPACAALVATLVRSRRL 157

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---------- 120
            +A  V   M +++  RPP +++ +L G LA+ +  +  L L +++   G          
Sbjct: 158 EDAFRVIGAMRHLK-FRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTT 216

Query: 121 -------------------------LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155
                                    L PD   YN+ I+CF K G V   +     +    
Sbjct: 217 LVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHG 276

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV---FTYNTLINGLCRTGHTI 212
             PD V++TS++  LC   R+ EA  LF ++     E DV   + YNT+I G        
Sbjct: 277 LRPDDVSYTSMVWVLCKAGRLGEAEELFGQME---AERDVPCAYAYNTMIMGYGSAERFD 333

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A  L E +     E G  C P  +++++I+  L K+      L       F  + K A 
Sbjct: 334 DAYKLLERLR----ERG--CIPSVVSFNSILTCLGKKRKVDEALTL-----FDVMKKDA- 381

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
             P +    + ++ LC+   + +  K++   EL      AGL PN+++ NI++  LC   
Sbjct: 382 -KPNISTYNIIIDMLCMAGRVNEAYKIRDEMEL------AGLFPNLLSVNIMVDRLCKAN 434

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           Q++E         +F+  +  G  P+  TY  LI+   K G++   + +F ++L +    
Sbjct: 435 QLEEAHR------IFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDA 488

Query: 393 DAVTFTSLIK 402
           + + +TSLI+
Sbjct: 489 NPIIYTSLIR 498



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 6/168 (3%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           + ++   P V ++  +   LAK    D    LF+     G+  +   Y+ LI+ F K+GR
Sbjct: 621 MKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGR 680

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200
           +   +++L  +++   TP+  T+ SL+  L     I EA   F  ++   C  + +TY+ 
Sbjct: 681 IDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSI 740

Query: 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           LINGLCR      A   ++EM       G++  P+ +TY+T+I GL K
Sbjct: 741 LINGLCRVQKYNKAFVFWQEMQKQ----GLI--PNVVTYTTMISGLAK 782



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 1/150 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + + M+  +   P V ++N L   L KT+  D  L  F+ +      P+ YTY+I
Sbjct: 682 DEAYLILEEMMK-KGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSI 740

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  C++ + +  FV    + +    P+ VT+T++I  L     I +A +LF + +  G
Sbjct: 741 LINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNG 800

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEE 220
              D  ++N LI G+      + A  +FEE
Sbjct: 801 GIPDSASFNALIEGMSNANRPMEAYQVFEE 830



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 74/138 (53%), Gaps = 1/138 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EAL  F  M  M+ S P   +++IL   L + + Y+     ++ +   GL P+  TY  
Sbjct: 717 DEALICFQSMKEMKCS-PNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTT 775

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I+   K+G ++  + +  R   +   PD+ +F +LI+ +   +R MEA  +F + R+ G
Sbjct: 776 MISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRG 835

Query: 191 CELDVFTYNTLINGLCRT 208
           C L+V T  +L++ L +T
Sbjct: 836 CRLNVKTCISLLDALNKT 853



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 6/119 (5%)

Query: 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
           +  LI  L +  + + A EL + +   G   +V  +  L+R L  +GQM      E    
Sbjct: 179 YTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQM------EPALA 232

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           L   +  + L PD+  YN+ I+CF K G V   +  F  +      PD V++TS++ +L
Sbjct: 233 LVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVL 291


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 139/325 (42%), Gaps = 62/325 (19%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD +      RP V SFN L     +    D    L   ++ +G+ PD YTY++LI
Sbjct: 155 AQSVFDAITKW-GLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P+ VTFT+LI   C   R+  A  ++ +L   G  
Sbjct: 214 NGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIFGLCKKGDLKQARDLIDEMSMKE------LKPDKITYTTLIDGSCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                                                         L+ A E  + + + 
Sbjct: 326 ---------------------------------------------DLETAFEYRKRMIKE 340

Query: 313 GLMPNVVTYNILIRGLCNDGQ-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            +  + V Y  LI GLC +G+ +D  K       + + + S GL PD  TY ++IN FCK
Sbjct: 341 NIRLDDVAYTALISGLCQEGRSVDAEK-------MLRGMLSVGLKPDNGTYTMIINEFCK 393

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVT 396
            G V +G  +   +      P  VT
Sbjct: 394 KGDVKTGSKLLKEMXRDGHVPCVVT 418



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 135/302 (44%), Gaps = 24/302 (7%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L K K++  V   +K +   G     Y +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPS 170

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V+F +L+        + E   L + +   G + DV+TY+ LINGLC+      A  LF 
Sbjct: 171 VVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFN 230

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM +     G+V  P+ +T++T+IDG CK  G  +      M  +  L    F   L+  
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKN-GRVDL----AMEIYKQLLSQGFSPDLI-- 277

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                 +  LI GLCK   LK AR+L   +    L P+ +TY  LI G C +G +     
Sbjct: 278 -----TYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDL----- 327

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
            ET F   KR+    +  D   Y  LI+  C+ GR      +   +L     PD  T+T 
Sbjct: 328 -ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTM 386

Query: 400 LI 401
           +I
Sbjct: 387 II 388



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 29/142 (20%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-------DETKHY- 340
           +++ L K+   K+    ++ +   G   ++  +NIL+   C +G+M       D    + 
Sbjct: 107 VLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWG 166

Query: 341 ---------------------ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                                +  F L   ++++G+ PD+YTY++LIN  CK  ++    
Sbjct: 167 LRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAN 226

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  +L +   P+ VTFT+LI
Sbjct: 227 ELFNEMLDNGLVPNGVTFTTLI 248


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 141/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +    L P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +      
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGCM 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 129/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLETAFEYRKRMI----KENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLLKEMQRDGCMPSVVT 418



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 139/315 (44%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           R P  +   +   L K K++  V   ++     G     Y +NIL++ F K G +     
Sbjct: 98  RVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQS 157

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   I +    P  V+F +L+        + E   L   ++  G + DV+TY+ LINGLC
Sbjct: 158 VFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLC 217

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      A  LF+EM +     G+V  P+ +T++T+IDG CK  G  +      M  +  
Sbjct: 218 KESKMDDANELFDEMLDN----GLV--PNGVTFTTLIDGHCKN-GRVDL----AMEIYKQ 266

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +   +    L+        +  LI GLCK   LK A++L   +   GL P+ +TY  LI 
Sbjct: 267 MLSQSLSPDLI-------TYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLID 319

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C +G +      ET F   KR+    +  D   Y  LI+  C+ GR      +   +L
Sbjct: 320 GNCKEGDL------ETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREML 373

Query: 387 PSCFTPDAVTFTSLI 401
                P+  T+T +I
Sbjct: 374 SVGLKPEIGTYTMII 388


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 133/308 (43%), Gaps = 35/308 (11%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           G+ P   TYN +I+   + G+V    V    +      PD +T+ SL+   C    + EA
Sbjct: 338 GIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEA 397

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             LF  LR  G    V TYN LI+G CR G    A  L EEM          C PD  TY
Sbjct: 398 LLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQG------CLPDVCTY 451

Query: 240 STIIDG---LCKEAGSANF--------LGFSCMASFS------ALNKMAFYFPLVRVQCL 282
           + ++ G    C  A +  F        L   C A  +       L  +A  F L  V  L
Sbjct: 452 TILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMML 511

Query: 283 ------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
                  + +  LIDGLCK   L  A++L   +   GL P+ +TY  LI   C  G + E
Sbjct: 512 EGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLRE 571

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
            + +      FK + S GL P   TY + I+ +C+ G + S +  F ++L     P+ +T
Sbjct: 572 ARKF------FKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEIT 625

Query: 397 FTSLIKIL 404
           +  LI  L
Sbjct: 626 YNVLIHAL 633



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 133/315 (42%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++N L     K       L LF  L   GL P   TYNILI+ +C++G +     
Sbjct: 375 QPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARR 434

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   ++     PD  T+T L+K       +  A   F ++   G + D F YNT I    
Sbjct: 435 LKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAEL 494

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A  L E M             D +TY+ +IDGLCK     +          + 
Sbjct: 495 TLGAIAKAFRLREVMMLEG------ISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNG 548

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L            Q  C+ + CLI   C+   L+ AR+ F+ +   GL P+ VTY + I 
Sbjct: 549 L------------QPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIH 596

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             C  G +       + +  F+++   G+ P+  TYN+LI+  C+ GR    +  F  +L
Sbjct: 597 AYCRRGNL------YSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEML 650

Query: 387 PSCFTPDAVTFTSLI 401
                P+  T+T LI
Sbjct: 651 ERGLVPNKYTYTLLI 665



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 140/373 (37%), Gaps = 70/373 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +   L ++   +     F  +   GL PD  TYN L+N +CK G +    ++
Sbjct: 341 PTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLL 400

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
            G +  +   P  +T+  LI   C    + EA  L  ++   GC  DV TY  L+ G   
Sbjct: 401 FGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHN 460

Query: 208 TGHTIVALNLFEEMANGNGE---------------FGVVCEP--------------DAIT 238
                +A   F+EM +   +                G + +               D +T
Sbjct: 461 ACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVT 520

Query: 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298
           Y+ +IDGLCK     +          + L            Q  C+ + CLI   C+   
Sbjct: 521 YNILIDGLCKTGNLNDAKDLQMKMVHNGL------------QPDCITYTCLIHAHCERGL 568

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-----------DE----------- 336
           L+ AR+ F+ +   GL P+ VTY + I   C  G +           +E           
Sbjct: 569 LREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNV 628

Query: 337 -------TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                  T   +  +  F  +   GL P+ YTY +LI+  CK G        +  +  + 
Sbjct: 629 LIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNG 688

Query: 390 FTPDAVTFTSLIK 402
             PD +T  +L K
Sbjct: 689 IHPDYLTHKALFK 701



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 25/246 (10%)

Query: 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
            PD      +++ L   +R  +  A+  ++   G E  + TYNTL++   + G       
Sbjct: 199 APDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGRNDKVAM 258

Query: 217 LFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
           L +EM   G+G     C P+ +T++ +I GL ++    +    + M     L+K A  F 
Sbjct: 259 LLKEMETRGSG-----CLPNDVTHNVVITGLARKG---DLEEAAEMVEGMRLSKKASSF- 309

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                     +  LI GL     +K A +L   +   G+MP VVTYN +I GL   GQ+ 
Sbjct: 310 ---------TYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQV- 359

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
                E   + F  + + GL PD+ TYN L+N +CK G +    ++FG +  +   P  +
Sbjct: 360 -----EAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVL 414

Query: 396 TFTSLI 401
           T+  LI
Sbjct: 415 TYNILI 420



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 126/295 (42%), Gaps = 27/295 (9%)

Query: 110 LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           LS F  +   G+ PD    N ++       R      V   +L+    P  VT+ +L+  
Sbjct: 187 LSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDS 246

Query: 170 LCAESRIMEAAALFTKL--RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE 227
              E R  + A L  ++  R  GC  +  T+N +I GL R G    A  + E M      
Sbjct: 247 FLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMR----- 301

Query: 228 FGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
             +  +  + TY+ +I GL  +       GF   A     + +        +    + + 
Sbjct: 302 --LSKKASSFTYNPLITGLLAK-------GFVKKA-----DDLQLEMENEGIMPTVVTYN 347

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            +I GL +  +++ A+  F  +   GL P+V+TYN L+ G C  G + E        LLF
Sbjct: 348 AMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKE------ALLLF 401

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             L   GL P + TYNILI+ +C++G +     +   ++     PD  T+T L+K
Sbjct: 402 GDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMK 456



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 6/133 (4%)

Query: 113 FKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172
           FK +   GL P   TY + I+ +C+ G +   +    ++L     P+ +T+  LI  LC 
Sbjct: 576 FKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCR 635

Query: 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
             R   A   F ++   G   + +TY  LI+G C+ G+   A+  + EM + NG      
Sbjct: 636 TGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEM-HQNG-----I 689

Query: 233 EPDAITYSTIIDG 245
            PD +T+  +  G
Sbjct: 690 HPDYLTHKALFKG 702



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 1/138 (0%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++ +      +  +  +    F+++   G+ P+  TYN+LI+  C+ GR    +  
Sbjct: 586 PSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRH 645

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +L     P+  T+T LI   C E    +A   + ++   G   D  T+  L  G   
Sbjct: 646 FHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHKALFKGF-D 704

Query: 208 TGHTIVALNLFEEMANGN 225
            GH   A+   E    G 
Sbjct: 705 EGHMNHAIEYLENAVLGE 722


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 167/393 (42%), Gaps = 66/393 (16%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGD+     N+A  +F  M+  R   P   +++ +   L K +  D   +  +++   G+
Sbjct: 232 EGDV-----NKACDLFKEMVQ-RGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 285

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+ +TYN LI  +   G+      V   + R    PD VTF  L+  LC   +I EA  
Sbjct: 286 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARD 345

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC--------- 232
           +F  + + G   DVF+YN ++NG    G  +   +LF+ M  G+G   V+C         
Sbjct: 346 VFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLML-GDGIAPVICTFNVLIKAY 404

Query: 233 ---------------------EPDAITYSTIIDGLCK----------------EAGSANF 255
                                +P+ +TY+T+I  LC+                +  + + 
Sbjct: 405 ANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 464

Query: 256 LGFSCMA----SFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
             + C+     +  +L K       +    + L+   F  +I+ LCK+ ++  A+ +F  
Sbjct: 465 YAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDL 524

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
               GL P  V Y++L+ G C  G+M      E    +F  + S G+ P+   Y  L+N 
Sbjct: 525 TVNVGLHPTAVVYSMLMDGYCLVGKM------EKALRVFDAMVSAGIEPNDVVYGTLVNG 578

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +CKIGR+  G  +F  +L     P  + +  +I
Sbjct: 579 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIII 611



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 126/285 (44%), Gaps = 29/285 (10%)

Query: 121 LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA- 179
           L P  +TY IL++C  +  R        G++LR+    D +    L+K  C   R  EA 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 166

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
             L  +    GC  DVF+Y+ L+  LC  G +  A +L   MA G    G VC PD + Y
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG----GAVCSPDVVAY 222

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL---CLIDGLCKI 296
           +T+IDG  KE                 +NK    F  +  + +  +F+    ++  LCK 
Sbjct: 223 NTVIDGFFKEGD---------------VNKACDLFKEMVQRGIPPDFVTYSSVVHALCKA 267

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
             +  A    + +   G++PN  TYN LI G  + GQ  E         +FK +    + 
Sbjct: 268 RAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVR------VFKEMRRQSIL 321

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           PD+ T+N+L+   CK G++     +F  +      PD  ++  ++
Sbjct: 322 PDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 366



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 154/346 (44%), Gaps = 44/346 (12%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF-V 146
           P   ++ IL  C  +    +  L+ F +L  TGL  D    N L+  FC+  R      +
Sbjct: 109 PTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDI 168

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG--CELDVFTYNTLING 204
           +L R       PD  +++ L+K LC + +  +A  L   +   G  C  DV  YNT+I+G
Sbjct: 169 LLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDG 228

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG---SANFL----- 256
             + G    A +LF+EM     + G+   PD +TYS+++  LCK      +  FL     
Sbjct: 229 FFKEGDVNKACDLFKEMV----QRGI--PPDFVTYSSVVHALCKARAMDKAEAFLRQMVN 282

Query: 257 ---------------GFSCMASFSALNKMAFYFPLVRVQCL---CLNFLCLIDGLCKISK 298
                          G+S    +    ++   F  +R Q +    + F  L+  LCK  K
Sbjct: 283 KGVLPNNWTYNNLIYGYSSTGQWKEAVRV---FKEMRRQSILPDVVTFNMLMGSLCKYGK 339

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           +K AR++F ++   G  P+V +YNI++ G    G + +         LF  +   G+ P 
Sbjct: 340 IKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTD------LFDLMLGDGIAPV 393

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + T+N+LI  +   G +    +IF  +      P+ +T+T++I  L
Sbjct: 394 ICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAAL 439



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 148/356 (41%), Gaps = 50/356 (14%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD ML    + P + +FN+L    A     D  + +F  +   G+ P+  TY  +I   
Sbjct: 381 LFDLMLGDGIA-PVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAAL 439

Query: 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195
           C++G++        +++     PD   +  LI+  C    +++A  L +++   G  LD+
Sbjct: 440 CRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDI 499

Query: 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF 255
             ++++IN LC+ G  + A N+F+   N      V   P A+ YS ++DG C        
Sbjct: 500 VLFSSIINNLCKLGRVMDAQNIFDLTVN------VGLHPTAVVYSMLMDGYCLVGKMEKA 553

Query: 256 LG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
           L  F  M S         Y  LV             +G CKI ++     LF+ + + G+
Sbjct: 554 LRVFDAMVSAGIEPNDVVYGTLV-------------NGYCKIGRIDEGLSLFREMLQKGI 600

Query: 315 MPNVVTYNILIRGLCNDG----------QMDET-------------------KHYETVFL 345
            P+ + YNI+I GL   G          +M E+                   + ++    
Sbjct: 601 KPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIF 660

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           LFK L +  +  D+ T N +I    +  RV     +F  I  S   P  VT++ +I
Sbjct: 661 LFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMI 716



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 165/394 (41%), Gaps = 77/394 (19%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A+ +F+ M +    +P V ++  +   L +    D  +  F ++   G+ PD+Y Y+ 
Sbjct: 411 DKAMIIFNEMRD-HGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 469

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF------- 183
           LI  FC  G +     ++  I+ +    D V F+S+I +LC   R+M+A  +F       
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 184 ----------------------TKLRVF------GCELDVFTYNTLINGLCRTGHTIVAL 215
                                   LRVF      G E +   Y TL+NG C+ G     L
Sbjct: 530 LHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGL 589

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS---ANFLGFSCMASFSALNKMAF 272
           +LF EM           +P  I Y+ IIDGL  EAG    A         S  A+NK  +
Sbjct: 590 SLFREMLQKG------IKPSTILYNIIIDGLF-EAGRTVPAKVKFHEMTESGIAMNKCTY 642

Query: 273 YFPL-----------------------VRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
              L                       V++  + LN   +I G+ +  +++ A++LF S+
Sbjct: 643 SIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLN--TMIAGMFQTRRVEEAKDLFASI 700

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            R+GL+P VVTY+I+I  L  +G ++E +       +F  + + G  PD    N ++   
Sbjct: 701 SRSGLVPCVVTYSIMITNLIKEGLVEEAED------MFSSMQNAGCEPDSRLLNHVVREL 754

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403
            K   +        +I    F+ + +T   L+ +
Sbjct: 755 LKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDL 788



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 136/317 (42%), Gaps = 24/317 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +     K    +    LFK +   G+ PD  TY+ +++  CK   +      
Sbjct: 217 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAF 276

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L +++     P+  T+ +LI    +  +  EA  +F ++R      DV T+N L+  LC+
Sbjct: 277 LRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCK 336

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A ++F+ MA   G+      PD  +Y+ +++G   +          C+   + L
Sbjct: 337 YGKIKEARDVFDTMAM-KGQ-----NPDVFSYNIMLNGYATKG---------CLVDMTDL 381

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
             +     +  V C    F  LI        L  A  +F  +   G+ PNV+TY  +I  
Sbjct: 382 FDLMLGDGIAPVIC---TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAA 438

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC  G+MD+          F ++   G+ PD Y Y+ LI  FC  G +     +   I+ 
Sbjct: 439 LCRIGKMDDAMEK------FNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMN 492

Query: 388 SCFTPDAVTFTSLIKIL 404
           +    D V F+S+I  L
Sbjct: 493 NGMHLDIVLFSSIINNL 509


>gi|449442212|ref|XP_004138876.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g24830-like [Cucumis sativus]
 gi|449499387|ref|XP_004160802.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g24830-like [Cucumis sativus]
          Length = 633

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 160/357 (44%), Gaps = 44/357 (12%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  +F  ML M PS P   ++NI+        + D  L LF  +  +G+ P R TYNIL+
Sbjct: 188 ADSLFREMLEMGPS-PNCATYNIIIKGFCLRMNMDKALDLFYTMVNSGIRPSRITYNILL 246

Query: 133 NCFCKMGRVSHGF----VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           +  CK G +        V+LG  +++  T DA+T T L+         ++A AL+ K+  
Sbjct: 247 HALCKRGILVDARKLLEVILGDDIKT--TDDAITSTILMDSCFKSGDTIQAVALWDKMVE 304

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
              E+DV  YN LI+GLC      +AL    +M     + G +  PD  TY+T+I   CK
Sbjct: 305 KKTEIDVVAYNVLIHGLCLNQDKKIALGYVADML----KRGFL--PDIFTYNTLISAFCK 358

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN----------------------- 285
           E    +      + S   ++     + ++ +Q LC+N                       
Sbjct: 359 EGQFGDAYYIHDVMSRMGVSPDQILYKMI-IQALCMNGDAIKADEFLHSMLEKSMVPEPH 417

Query: 286 -FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
            +  +ID   +   L  A      +  AG+ PNV TYN LI      G +       + +
Sbjct: 418 IWNLIIDCYGRYGYLSNAISKRDQMLVAGVQPNVFTYNALIHAQVRGGNI------FSAY 471

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            L K +   GLFPD+ TYN+LIN  CK G++     ++  +L   +  D +T+T LI
Sbjct: 472 SLKKEMLLLGLFPDVVTYNLLINGACKHGQLRFALQLYDEMLRKGYEADKITYTELI 528



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 170/432 (39%), Gaps = 80/432 (18%)

Query: 26  SENEPSYPTTTATLRLTVKDRASLEQF--LKERCKSSGEGDITSITPNEALCVFDYMLNM 83
           +E+E S      +L  TV D   L       E+   +GEGD     P     V D +L  
Sbjct: 51  NEDEDSLHPALKSLMTTVGDHCDLRSSDCFSEKRNFNGEGD-----PGAVFNVLDALLKG 105

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
              R      +I   CLAK+     VL   ++       PD   Y +++   C  G+   
Sbjct: 106 SLDRLKTMRESI---CLAKSGLQKCVLEATQQ-------PD---YTVMVRDLCLKGKFGA 152

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
             ++  ++++  F  D VT   L+  LC    +  A +LF ++   G   +  TYN +I 
Sbjct: 153 ALLLRRKLIKEGFAVDLVTHNYLLNGLCINCDMEMADSLFREMLEMGPSPNCATYNIIIK 212

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--------------- 248
           G C   +   AL+LF  M N          P  ITY+ ++  LCK               
Sbjct: 213 GFCLRMNMDKALDLFYTMVNSG------IRPSRITYNILLHALCKRGILVDARKLLEVIL 266

Query: 249 --------EAGSANFLGFSCMASFSALNKMAFYFPLV--RVQCLCLNFLCLIDGLCKISK 298
                   +A ++  L  SC  S   +  +A +  +V  + +   + +  LI GLC    
Sbjct: 267 GDDIKTTDDAITSTILMDSCFKSGDTIQAVALWDKMVEKKTEIDVVAYNVLIHGLCLNQD 326

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF---------LLFK- 348
            KIA      + + G +P++ TYN LI   C +GQ  +  +   V          +L+K 
Sbjct: 327 KKIALGYVADMLKRGFLPDIFTYNTLISAFCKEGQFGDAYYIHDVMSRMGVSPDQILYKM 386

Query: 349 -------------------RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
                               +    + P+ + +N++I+C+ + G +S+      ++L + 
Sbjct: 387 IIQALCMNGDAIKADEFLHSMLEKSMVPEPHIWNLIIDCYGRYGYLSNAISKRDQMLVAG 446

Query: 390 FTPDAVTFTSLI 401
             P+  T+ +LI
Sbjct: 447 VQPNVFTYNALI 458



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 155/357 (43%), Gaps = 38/357 (10%)

Query: 41  LTVKDRASLEQFLKERCKSSGEGDITSITPN---------EALCVFDYMLNMRPSRPPVT 91
           + V  R  LE  L +  K++ +   ++I  +         +A+ ++D M+  + +   V 
Sbjct: 254 ILVDARKLLEVILGDDIKTTDDAITSTILMDSCFKSGDTIQAVALWDKMVE-KKTEIDVV 312

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           ++N+L   L   +     L     +   G  PD +TYN LI+ FCK G+    + +   +
Sbjct: 313 AYNVLIHGLCLNQDKKIALGYVADMLKRGFLPDIFTYNTLISAFCKEGQFGDAYYIHDVM 372

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
            R   +PD + +  +I+ LC     ++A      +       +   +N +I+   R G+ 
Sbjct: 373 SRMGVSPDQILYKMIIQALCMNGDAIKADEFLHSMLEKSMVPEPHIWNLIIDCYGRYGYL 432

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A++  ++M       GV  +P+  TY+ +I         A   G +  +++S   +M 
Sbjct: 433 SNAISKRDQMLVA----GV--QPNVFTYNALI--------HAQVRGGNIFSAYSLKKEML 478

Query: 272 FY--FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
               FP V      + +  LI+G CK  +L+ A +L+  + R G   + +TY  LI G C
Sbjct: 479 LLGLFPDV------VTYNLLINGACKHGQLRFALQLYDEMLRKGYEADKITYTELINGHC 532

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
             G+M E +       LF  L+ +GL  D+  + ++   + KIG        + R L
Sbjct: 533 MCGEMKEAED------LFFELHRSGLPMDIVPFKVIFEKYQKIGEPDMALKFYRRRL 583



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344
           ++  ++  LC   K   A  L + L + G   ++VT+N L+ GLC +  M      E   
Sbjct: 136 DYTVMVRDLCLKGKFGAALLLRRKLIKEGFAVDLVTHNYLLNGLCINCDM------EMAD 189

Query: 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            LF+ +   G  P+  TYNI+I  FC    +     +F  ++ S   P  +T+  L+  L
Sbjct: 190 SLFREMLEMGPSPNCATYNIIIKGFCLRMNMDKALDLFYTMVNSGIRPSRITYNILLHAL 249


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 152/337 (45%), Gaps = 37/337 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++  L   L K+   D   +L +++   G  P+  TY  LI+  CK  R       + 
Sbjct: 45  VVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVK 104

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL-DVFTYNTLINGLCRT 208
           R+LRS   PD VT+ SLI  LC  +R+ +A  +  +L +    + DV TYNT I+GLC+ 
Sbjct: 105 RMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKA 164

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK---------------EAGSA 253
           G     L + EEM  G         PD +T+ +II GLCK               E G  
Sbjct: 165 GKLDKGLEMLEEMDRGG------ISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCV 218

Query: 254 -NFLGFSCM-ASFSALNKMAFYFPLVRVQ------CLCLNFLCLIDGLCKISKLKIAREL 305
            + L +S M  + S  N++     ++          L   +  LI  L +   ++ A   
Sbjct: 219 PDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWA 278

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           ++    AG +  V T+N  I  LC  G+    K+     +L   + S G  P+L +YN +
Sbjct: 279 YEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKN-----ILLGMIES-GSLPNLLSYNFV 332

Query: 366 INCFCKIGRVSSGFVIFGRILPS-CFTPDAVTFTSLI 401
           I+  CK G V   + +  ++L S C  PD + F +LI
Sbjct: 333 IDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLI 369



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 150/334 (44%), Gaps = 26/334 (7%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL-TGLFPDRYTY 128
           P++A+     ML      P + ++N L   L      D    + + L + +G  PD  TY
Sbjct: 96  PHDAIQTVKRMLR-SGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTY 154

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           N  I+  CK G++  G  +L  + R   +PD VTF S+I  LC  +RI +A  +F  +  
Sbjct: 155 NTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLE 214

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            GC  D  TY+ +++ L R         + E M   +G + +     + TY+ +I  L +
Sbjct: 215 RGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVK-SGHYAL-----SATYAPLIHALIR 268

Query: 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
            AG      ++   +  A   M  Y                I  LC+  K  +A+ +   
Sbjct: 269 -AGDIESASWAYEQAMEAGCVMEVY-----------THNAFIGALCRSGKFPLAKNILLG 316

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +  +G +PN+++YN +I GLC  G +D+        L  K L+S    PD+  +N LI+ 
Sbjct: 317 MIESGSLPNLLSYNFVIDGLCKSGNVDDAWK-----LSRKMLDSGCCKPDVIFFNTLISG 371

Query: 369 FCKIGRVSSGFVIFGRILPSCF-TPDAVTFTSLI 401
           FCK GR+S    +   +       PD VT+ ++I
Sbjct: 372 FCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMI 405



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 129/281 (45%), Gaps = 23/281 (8%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D   YN LI   CK  +  H   +L  +  + +    VT+T+LI  LC    +  A AL 
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            K+   GC  +V TY  LI+GLC+      A+   + M          CEPD +TY+++I
Sbjct: 69  QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSG------CEPDLVTYNSLI 122

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
            GLC     AN +  + +     L   +   P V      + +   I GLCK  KL    
Sbjct: 123 HGLCM----ANRMDDAGLV-LQELMIESGRIPDV------VTYNTFISGLCKAGKLDKGL 171

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           E+ + + R G+ P+VVT+  +I GLC   ++D+       F +FK +   G  PD  TY+
Sbjct: 172 EMLEEMDRGGISPDVVTFCSIISGLCKANRIDDA------FQVFKGMLERGCVPDSLTYS 225

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           I+++   +  R+ +   +   ++ S     + T+  LI  L
Sbjct: 226 IMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHAL 266



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 29/252 (11%)

Query: 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215
           F  DA  + +LI  LC   +   A  L   +   G +  V TY TLI+GLC++G    A 
Sbjct: 6   FRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQ 65

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            L ++MA+        C P+ +TY+ +IDGLCK     +        +   + +M     
Sbjct: 66  ALLQKMADAG------CAPNVVTYTALIDGLCKARRPHD--------AIQTVKRM----- 106

Query: 276 LVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLP-RAGLMPNVVTYNILIRGLCNDG 332
            +R  C    + +  LI GLC  +++  A  + Q L   +G +P+VVTYN  I GLC  G
Sbjct: 107 -LRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAG 165

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           ++D+         + + ++  G+ PD+ T+  +I+  CK  R+   F +F  +L     P
Sbjct: 166 KLDKG------LEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVP 219

Query: 393 DAVTFTSLIKIL 404
           D++T++ ++  L
Sbjct: 220 DSLTYSIMLDNL 231



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 119/268 (44%), Gaps = 24/268 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +F  +   L K    D    +FK +   G  PD  TY+I+++   +  R+     V
Sbjct: 184 PDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEV 243

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +++S     + T+  LI  L     I  A+  + +    GC ++V+T+N  I  LCR
Sbjct: 244 LEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCR 303

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
           +G   +A N+   M     E G +  P+ ++Y+ +IDGLCK     +    S     S  
Sbjct: 304 SGKFPLAKNILLGMI----ESGSL--PNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGC 357

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL-MPNVVTYNILIR 326
            K    F           F  LI G CK  +L  A++L + +    + +P+VVTYN +I 
Sbjct: 358 CKPDVIF-----------FNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMID 406

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTG 354
           G    G + + K      LL + + + G
Sbjct: 407 GQSKFGSLKQAK------LLLEEMQAVG 428


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 155/343 (45%), Gaps = 49/343 (14%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +F +L   L +   +  V+ LF  L   G+     TY ++++  C  G  +    ++ R 
Sbjct: 21  AFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELV-RE 79

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           L   +TP    +  +I  LC  SR+M+A  +  K+       +VFTY  L+NGLCR+  T
Sbjct: 80  LSGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKT 139

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
            +A  +F+EM   NG     C+P+ ITY T+I  L + AG  +       A    + + +
Sbjct: 140 KLAREVFQEMKR-NG-----CKPNPITYGTLIQHLSR-AGEID------EALRVMIEQRS 186

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
              P   + C       ++ GLCK S+L  A +  + + + G+ PN VTY+ L+ G    
Sbjct: 187 LELPTDVITC-----TTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQH 241

Query: 332 GQMD------------------------------ETKHYETVFLLFKRLNSTGLFPDLYT 361
           G++D                              +  + +      + L  +G+ PD+ T
Sbjct: 242 GELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVT 301

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           Y++LIN F + G+  +   +   +  +   PD VT+++LI +L
Sbjct: 302 YSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVL 344



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 149/350 (42%), Gaps = 54/350 (15%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++ IL   L ++        +F+ +   G  P+  TY  LI    + G +     V
Sbjct: 121 PNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRV 180

Query: 148 LGRILRSCFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +    RS   P D +T T+++  LC  SR+ +A     ++R  G   +  TY+ L++G  
Sbjct: 181 MIE-QRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFR 239

Query: 207 RTGHTIVALNLFEEMANGNG--------------------------------EFGVVCEP 234
           + G     +  FEE     G                                + GVV  P
Sbjct: 240 QHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVV--P 297

Query: 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294
           D +TYS +I+   + AG  +       AS   L  M        V+   + +  LI+ LC
Sbjct: 298 DVVTYSMLINTFAR-AGQFD-------ASLELLEDMRRNG----VKPDVVTYSTLINVLC 345

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K  K + A  L + +  AG  PNVVTYN ++ GLC  G+MDE      V  +++ +  + 
Sbjct: 346 KERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDE------VHRVYEMMLKSR 399

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             PD+ TY+I++N   K G + S   +F  I  S   PDA  ++ +I  L
Sbjct: 400 CSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSL 449



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 142/318 (44%), Gaps = 31/318 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P +  +N +   L +         + +++    + P+ +TY IL+N  C+  +      V
Sbjct: 86  PTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREV 145

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              + R+   P+ +T+ +LI+ L     I EA  +  + R      DV T  T++ GLC+
Sbjct: 146 FQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCK 205

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 AL   EEM     + GV   P+ +TYS ++ G  ++ G               L
Sbjct: 206 ASRLDDALKFMEEMR----QMGV--RPNEVTYSNLVHGF-RQHGE--------------L 244

Query: 268 NKMAFYFPLVRVQ----CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           +++  +F   + +         +   +D LCK   L  AR+  + L ++G++P+VVTY++
Sbjct: 245 DRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSM 304

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI      GQ D +        L + +   G+ PD+ TY+ LIN  CK  +    F +  
Sbjct: 305 LINTFARAGQFDAS------LELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLE 358

Query: 384 RILPSCFTPDAVTFTSLI 401
            +  +   P+ VT+ S++
Sbjct: 359 LMEAAGSPPNVVTYNSVM 376



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 140/318 (44%), Gaps = 44/318 (13%)

Query: 71  NEALCVFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128
           +EAL V   M+  R    P  V +   + G L K    D  L   + +   G+ P+  TY
Sbjct: 175 DEALRV---MIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTY 231

Query: 129 NILINCFCKMGRVSHGFVVLGRILR--------SCFTPDAVTFTSLIKDLCAESRIMEAA 180
           + L++ F + G        L R++R           + +A  +   +  LC    +  A 
Sbjct: 232 SNLVHGFRQHGE-------LDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRAR 284

Query: 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240
               +LR  G   DV TY+ LIN   R G    +L L E+M   NG      +PD +TYS
Sbjct: 285 KSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRR-NG-----VKPDVVTYS 338

Query: 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300
           T+I+ LCKE        F        L + A   P V      + +  ++DGLCK  K+ 
Sbjct: 339 TLINVLCKERK------FQDAFRLLELMEAAGSPPNV------VTYNSVMDGLCKSGKMD 386

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
               +++ + ++   P+VVTY+I++ GL   G +D      +   LF+ + S+   PD  
Sbjct: 387 EVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLD------SAVKLFELIKSSREGPDAA 440

Query: 361 TYNILINCFCKIGRVSSG 378
            Y+++I   C+ G++   
Sbjct: 441 AYSMVITSLCRAGKLEEA 458



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 108/251 (43%), Gaps = 25/251 (9%)

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           ++ +    D+  FT L   L   S+  E   LFT L   G      TY  +++GLC  G 
Sbjct: 10  VVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGM 69

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              AL L  E++        V  P    Y+ II GLC+ +          M ++  L KM
Sbjct: 70  ANQALELVRELSG-------VYTPTLFIYNGIITGLCRAS--------RVMDAYKVLEKM 114

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                +  V      +  L++GLC+ +K K+ARE+FQ + R G  PN +TY  LI+ L  
Sbjct: 115 VEESIVPNV----FTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSR 170

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
            G++DE         +     S  L  D+ T   ++   CK  R+         +     
Sbjct: 171 AGEIDEA------LRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGV 224

Query: 391 TPDAVTFTSLI 401
            P+ VT+++L+
Sbjct: 225 RPNEVTYSNLV 235



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 62/135 (45%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V +++ L   L K + +     L + +   G  P+  TYN +++  CK G++     
Sbjct: 331 KPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHR 390

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V   +L+S  +PD VT++ ++  L     +  A  LF  ++      D   Y+ +I  LC
Sbjct: 391 VYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLC 450

Query: 207 RTGHTIVALNLFEEM 221
           R G    A  ++  M
Sbjct: 451 RAGKLEEACGMYHGM 465



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 11/146 (7%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++    S P V ++N +   L K+   D V  +++ +  +   PD  TY+I++N   K G
Sbjct: 359 LMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAG 418

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
            +     +   I  S   PDA  ++ +I  LC   ++ EA  ++      G E+ V   N
Sbjct: 419 MLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMY-----HGMEVTVAGDN 473

Query: 200 T------LINGLCRTGHTIVALNLFE 219
                  L+  LC    T  A  + E
Sbjct: 474 ICRALAGLVAALCDAERTDSARRIVE 499


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 134/287 (46%), Gaps = 26/287 (9%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   +L
Sbjct: 141 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 200

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++  A  LF ++ V G   +  T+ TLI+G C+ G   
Sbjct: 201 ASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVD 260

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +        PD ITY+T+I GLCK+             S   L    F
Sbjct: 261 LAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKF 314

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L  A    + + +  +  + V Y  LI GLC +G
Sbjct: 315 ------------TYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEG 362

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378
           + +D  K       + + + S GL PD  TY ++IN FCK G V  G
Sbjct: 363 RSVDAEK-------MLREMLSVGLXPDAGTYTMIINEFCKKGDVWKG 402



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 134/304 (44%), Gaps = 28/304 (9%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L K K++  V   ++ +   G     Y +NIL++ FCK G +     V   I +    P 
Sbjct: 113 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 172

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V++ +L+        + E   L + +   G   DV+TY+ LINGLC+      A  LF+
Sbjct: 173 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFD 232

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           EM       G+V  P+ +T++T+IDG CK  G  +               M  Y  ++  
Sbjct: 233 EMLVK----GLV--PNXVTFTTLIDGHCKN-GRVDL-------------AMEIYKQMLSQ 272

Query: 280 QCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
             L   + +  LI GLCK   LK A +L   +   GL P+  TY  LI G C +G +D  
Sbjct: 273 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLD-- 330

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
               T F   KR+    +  D   Y  LI+  C+ GR      +   +L     PDA T+
Sbjct: 331 ----TAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLXPDAGTY 386

Query: 398 TSLI 401
           T +I
Sbjct: 387 TMII 390



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 118/262 (45%), Gaps = 19/262 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G  PD YTY++LI
Sbjct: 157 AQSVFD-AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLI 215

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L     P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 216 NGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 275

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD  TY+T+IDG CKE   
Sbjct: 276 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKG------LKPDKFTYTTLIDGCCKEG-- 327

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 328 ------DLDTAFXHRKRMI----QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 377

Query: 313 GLMPNVVTYNILIRGLCNDGQM 334
           GL P+  TY ++I   C  G +
Sbjct: 378 GLXPDAGTYTMIINEFCKKGDV 399



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 1/149 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+ +   P + ++N L   L K         L   ++  GL PD++TY  LI
Sbjct: 262 AMEIYKQMLS-QSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLI 320

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E R ++A  +  ++   G  
Sbjct: 321 DGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLX 380

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            D  TY  +IN  C+ G       L +EM
Sbjct: 381 PDAGTYTMIINEFCKKGDVWKGSKLLKEM 409



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 109 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 162

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
            +   GL P + +YN L+N + ++G +  GF +   +L S   PD  T++ LI
Sbjct: 163 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLI 215


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 150/351 (42%), Gaps = 43/351 (12%)

Query: 86  SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145
           S  PV  +++L   L ++   D        +    + P   T + +I   CK GRV    
Sbjct: 337 SSQPV--YDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSAL 394

Query: 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL--RVFGCELDVFTYNTLIN 203
            +L  +++  + PD  T + LI +LC   +I EA      +  ++       F+YN+L+N
Sbjct: 395 SLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLN 454

Query: 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK--EAGSA-----NFL 256
            LC+      A  +F  M +   E   V  PD ++YS +IDG CK  E G A       +
Sbjct: 455 SLCKAKKVHQAFAIFSTMVS---ERSFV--PDVVSYSILIDGFCKIDELGRAEKLYKQMI 509

Query: 257 GFSCMASFSALN--------------KMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLK 300
             +C+ + +  N                  Y  +V   C    + +  LI G     K  
Sbjct: 510 DLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHD 569

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A ELF+++   G  PN VTYN L+ GLC + + DE         LF+++   G  PD  
Sbjct: 570 QAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHE------LFRKMVERGCDPDRV 623

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411
           TY  L+  FC +G++     +F  ++     PD V +  L+K      FFR
Sbjct: 624 TYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLK-----GFFR 669



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 154/337 (45%), Gaps = 27/337 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A  +F  M++ R   P V S++IL     K         L+K++      P+  TYN 
Sbjct: 463 HQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNA 522

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            +N   + GR++    V   ++ +  +PD +T+++LI       +  +A  LF  +   G
Sbjct: 523 FLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRG 582

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
           C  +  TYN L++GLC+      A  LF +M     E G  C+PD +TY+T++ G C   
Sbjct: 583 CRPNAVTYNCLLHGLCKESKPDEAHELFRKMV----ERG--CDPDRVTYTTLLYGFCNVG 636

Query: 251 GSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                +  F  M S         + P V      + + CL+ G  +  K   A++LFQ +
Sbjct: 637 KIEQAVEVFDEMVSKG-------HDPDV------VAYNCLLKGFFRAGKPGEAKQLFQVM 683

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST-GLFPDLYTYNILINC 368
                 P+ V++NI+I GL    ++D+         +F+R+    G  PDL TYN LI  
Sbjct: 684 VSRQCKPDTVSHNIMIDGLSKAKRLDDAVE------VFERMEQDHGCSPDLVTYNSLIFG 737

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
            C   R+S    +F  I     +PD   F  L++ ++
Sbjct: 738 LCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAIK 774



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 151/393 (38%), Gaps = 78/393 (19%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL  F + L  R  +  V ++N L   L + +       +F+++   G+ P+ +TY +L
Sbjct: 112 EALTFFRW-LQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVL 170

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT--------------------------- 164
           +   C            G ++   F P +  +                            
Sbjct: 171 VQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRV 230

Query: 165 --------SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
                   +L+ +   + + +EA+ LF  +   GC+ D   Y+ ++   C+  +   A  
Sbjct: 231 AVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFK 290

Query: 217 LFEEMANGNGEFGVVCEPDA----ITYSTIIDGLCKEAGSANFLGFSCMASFSAL-NKMA 271
           LF EMA          E  A    + ++  + GLCK +G       +C     +L +   
Sbjct: 291 LFLEMA---------VESKAPLNNVAWTAFLSGLCK-SGKIEQAFEACRTMQESLSSSQP 340

Query: 272 FYFPLVRV----------QCLCLNFL------------CLIDGLCKISKLKIARELFQSL 309
            Y  L+R+          +  CL                +I  LCK  ++  A  L +++
Sbjct: 341 VYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETM 400

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            + G  P++ T+++LI  LC   ++ E +     FL       +      ++YN L+N  
Sbjct: 401 IKRGYCPDMATHSMLINELCKADKIQEAQE----FLQGMDRKISSRSSSCFSYNSLLNSL 456

Query: 370 CKIGRVSSGFVIFGRILPS-CFTPDAVTFTSLI 401
           CK  +V   F IF  ++    F PD V+++ LI
Sbjct: 457 CKAKKVHQAFAIFSTMVSERSFVPDVVSYSILI 489



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 13/131 (9%)

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
           CL+D L +   LK A ++F+ +   G++PN  TY +L++  C +   DE   +      F
Sbjct: 134 CLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRF------F 187

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA-------VTFTSL 400
             +   G  P    Y  +  C    G+      +FGR L      +        V F   
Sbjct: 188 GEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQ 247

Query: 401 IKILEINSFFR 411
            K +E +  FR
Sbjct: 248 DKAIEASKLFR 258


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 149/330 (45%), Gaps = 32/330 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + +F+ L G L +   ++ V  +  ++   G  PD   Y  +I+  CK  R+     +
Sbjct: 250 PNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGI 309

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L R+     +P+ V + +L+K LC+  R  EA  L  ++    C LD  T+N L++ LC+
Sbjct: 310 LNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQ 369

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G     + + E+M     E G  C PD ITY+T+I+G CKE      +  + M     L
Sbjct: 370 NGLVDRVIEVLEQML----EHG--CMPDVITYTTVINGFCKEG----LIDEAVM----LL 415

Query: 268 NKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
             MA         C C    +++  ++ GLC   +   A EL   + + G  PN VT+N 
Sbjct: 416 RSMA--------ACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNT 467

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI  LC  G +      E    L K++   G  PDL +Y+ +I+   K G       +  
Sbjct: 468 LINFLCKKGLV------EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLN 521

Query: 384 RILPSCFTPDAVTFTSLIKILEINSFFRQV 413
            ++    +P+ + ++S+   L       +V
Sbjct: 522 VMVKKGMSPNTIIYSSIASALSGEGRINKV 551



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 136/275 (49%), Gaps = 31/275 (11%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +FNIL   L +    D V+ + +++   G  PD  TY  +IN FCK G +    ++L  +
Sbjct: 359 TFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSM 418

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 P+ V++T ++K LC+  R ++A  L +++   GC  +  T+NTLIN LC+ G  
Sbjct: 419 AACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 478

Query: 212 IVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGL----------------CKEAGSAN 254
             A+ L ++M  NG       C PD I+YST+IDGL                 K+  S N
Sbjct: 479 EQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPN 531

Query: 255 FLGFSCMASF----SALNKMAFYFPLVR---VQCLCLNFLCLIDGLCKISKLKIARELFQ 307
            + +S +AS       +NK+   F  ++   V+   + +  +I  LCK  +   A E   
Sbjct: 532 TIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLA 591

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
            +  +G +PN  TY ILIRGL ++G + E +   T
Sbjct: 592 YMVSSGCVPNESTYTILIRGLASEGFVKEAQEILT 626



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 139/308 (45%), Gaps = 46/308 (14%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+ YTY  L+   C  GR++    VL  + R    P    +   ++  C  S    A  +
Sbjct: 109 PNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGV 168

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
              L   GC LDV   N ++  +C  G    A+ L  ++    G     CEPD ++Y+ +
Sbjct: 169 LRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFG-----CEPDVVSYNAV 223

Query: 243 IDGLC------------KEAGSA----NFLGFSCMASFSALN-----------KMAFY-- 273
           + GLC            +E  +A    N + FS +      N           +MA +  
Sbjct: 224 LRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGC 283

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
            P VR+      +  +IDG+CK  +L++AR +   +P  GL PNVV YN L++GLC+  +
Sbjct: 284 APDVRM------YATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADR 337

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
            +E +      LL +  +      D+ T+NIL++  C+ G V     +  ++L     PD
Sbjct: 338 WEEAEG-----LLAEMFDKDCPLDDV-TFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPD 391

Query: 394 AVTFTSLI 401
            +T+T++I
Sbjct: 392 VITYTTVI 399



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 140/318 (44%), Gaps = 24/318 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P V S+N +   L   + +  V  L + +   G  P+  T++ LI   C+ G       
Sbjct: 214 EPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHE 273

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V  ++      PD   + ++I  +C E R+  A  +  ++  +G   +V  YNTL+ GLC
Sbjct: 274 VHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLC 333

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
                  A  L  EM      F   C  D +T++ ++D LC+       +          
Sbjct: 334 SADRWEEAEGLLAEM------FDKDCPLDDVTFNILVDFLCQNGLVDRVI--------EV 379

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L +M  +  +  V    + +  +I+G CK   +  A  L +S+   G  PN V+Y I+++
Sbjct: 380 LEQMLEHGCMPDV----ITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLK 435

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC+       + +     L  ++   G  P+  T+N LIN  CK G V     +  ++L
Sbjct: 436 GLCS------AERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQML 489

Query: 387 PSCFTPDAVTFTSLIKIL 404
            +  +PD ++++++I  L
Sbjct: 490 VNGCSPDLISYSTVIDGL 507



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 102/251 (40%), Gaps = 29/251 (11%)

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
            ++LI+ LCA  R  EAA   +          V  YN ++ G CR G    A  L     
Sbjct: 50  LSALIRSLCAAGRTAEAARALSAAGGG---AGVVAYNAMVAGYCRAGQLAAARRLA---- 102

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
                  V   P+A TY  ++  LC     A+ L    +    A    A   P+  V   
Sbjct: 103 -----ASVPVAPNAYTYFPLVRALCARGRIADALA---VLDDMARRGCAPTPPMYHVT-- 152

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
                  ++  C+ S  + A  + + L   G   +V   N++++ +C+ G +D     E 
Sbjct: 153 -------LEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVD-----EA 200

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           V LL   L S G  PD+ +YN ++   C   R      +   ++ +   P+ VTF++LI 
Sbjct: 201 VRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIG 260

Query: 403 ILEINSFFRQV 413
            L  N  F +V
Sbjct: 261 HLCRNGLFERV 271



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 53/134 (39%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S++ +   L K  + D  L L   +   G+ P+   Y+ + +     GR++    +
Sbjct: 495 PDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQM 554

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              I  +    DAV + ++I  LC       A      +   GC  +  TY  LI GL  
Sbjct: 555 FENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLAS 614

Query: 208 TGHTIVALNLFEEM 221
            G    A  +  E+
Sbjct: 615 EGFVKEAQEILTEL 628


>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 867

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 159/341 (46%), Gaps = 45/341 (13%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A   F  M+  +   P V  +N +     + K+ D   S+F  +   GL P+ +TY+IL
Sbjct: 466 DAATSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQPNNFTYSIL 525

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL----- 186
           I+ F K     + + V+ +++ S F  + V + ++I  LC   +  +A  +   L     
Sbjct: 526 IDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKR 585

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              GC     +YN++I+G  + G T  A+  + EM+    E G+   P+ +T++++I+G 
Sbjct: 586 YSMGCT----SYNSIIDGFFKEGDTDSAVEAYREMS----ENGI--SPNVVTFTSLINGF 635

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLV---RVQCLCLN---FLCLIDGLCKISKLK 300
           CK                   N+M     ++   + + L L+   +  LIDG CK + +K
Sbjct: 636 CKS------------------NRMDLALEMIHEMKSKDLKLDVPAYGALIDGFCKKNDMK 677

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A  LF  L   GLMPNV  YN LI G  N G+MD          L+K++ + G+  DL+
Sbjct: 678 TAYTLFSELLELGLMPNVSVYNNLISGFRNLGKMD------AAIDLYKKMVNDGISCDLF 731

Query: 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           TY  +I+   K G +     ++  +L     PD + +  L+
Sbjct: 732 TYTTMIDGLLKDGNLILASDLYSELLALGIVPDEILYVVLV 772



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 131/286 (45%), Gaps = 29/286 (10%)

Query: 91  TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150
           TS+N +     K    D+ +  ++ ++  G+ P+  T+  LIN FCK  R+     ++  
Sbjct: 591 TSYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHE 650

Query: 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210
           +       D   + +LI   C ++ +  A  LF++L   G   +V  YN LI+G    G 
Sbjct: 651 MKSKDLKLDVPAYGALIDGFCKKNDMKTAYTLFSELLELGLMPNVSVYNNLISGFRNLGK 710

Query: 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKM 270
              A++L+++M N     G+ C  D  TY+T+IDGL K+      L     +   AL   
Sbjct: 711 MDAAIDLYKKMVND----GISC--DLFTYTTMIDGLLKDGNL--ILASDLYSELLALG-- 760

Query: 271 AFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                +V  + L   ++ L++GL K  +   A ++ + + +    PNV+ Y+ +I G   
Sbjct: 761 -----IVPDEIL---YVVLVNGLSKKGQFVRASKMLEEMKKKDATPNVLIYSTVIAGHHR 812

Query: 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           +G ++E       F +   +   GL  D   +N+L++     GRV 
Sbjct: 813 EGNLNEA------FRVHDEMLEKGLVHDDTIFNLLVS-----GRVE 847



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 145/354 (40%), Gaps = 36/354 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  +++ M+ +  +   VT+  +L     + +  +  + +F+R+   G  PD   +++
Sbjct: 221 DEAKEIYNKMVLIGVAGDNVTT-QLLMRASLRERKPEEAMKIFRRVMSRGAEPDGLLFSL 279

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAV-TFTSLIKDLCAESRIMEAAALFTKLRVF 189
            +   CKM  +     +L  +      P +  T+TS+I     E  + EA  +  ++  F
Sbjct: 280 AVQAACKMKDLVMALDLLREMREKGGVPASQETYTSVIVACVKEGNMEEAVKVKDEMVGF 339

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G  + V    +LI G C       AL+ F  M     E G+   PD + +S +I+  CK 
Sbjct: 340 GIPMSVIAATSLITGFCNGNELGKALDFFNRME----EEGLA--PDKVMFSVMIEWFCKN 393

Query: 250 AGSANFLG-FSCMASFSALNKMAFYFPLVR-------------------VQCLCLNFLC- 288
                 +  +  M S            +++                      +   F+C 
Sbjct: 394 MEMEKAVEIYKRMKSVGIAPSSVLVHKMIQGCLKAESPEAALEIFNDSFETWIAHGFMCN 453

Query: 289 -LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            +   LCK  K+  A    + +   G+ PNVV YN ++   C    MD  +       +F
Sbjct: 454 KIFLLLCKQGKVDAATSFLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARS------IF 507

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             +   GL P+ +TY+ILI+ F K     + + +  +++ S F  + V + ++I
Sbjct: 508 SEMLEKGLQPNNFTYSILIDGFFKNQDEQNAWEVINQMIASNFEANEVIYNTII 561



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 114/287 (39%), Gaps = 21/287 (7%)

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI  FC    +        R+      PD V F+ +I+  C    + +A  ++ +++  G
Sbjct: 351 LITGFCNGNELGKALDFFNRMEEEGLAPDKVMFSVMIEWFCKNMEMEKAVEIYKRMKSVG 410

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEE-----MANG---NGEFGVVCEPDAITYSTI 242
                   + +I G  +      AL +F +     +A+G   N  F ++C+   +  +T 
Sbjct: 411 IAPSSVLVHKMIQGCLKAESPEAALEIFNDSFETWIAHGFMCNKIFLLLCKQGKVDAATS 470

Query: 243 IDGLCKEAGSA-------NFLGFSCMASFSALNKMAFYFPLVR-VQCLCLNFLCLIDGLC 294
              + +  G         N +   C      L +  F   L + +Q     +  LIDG  
Sbjct: 471 FLRMMENKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLQPNNFTYSILIDGFF 530

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           K    + A E+   +  +    N V YN +I GLC  GQ  + K      +  KR  S G
Sbjct: 531 KNQDEQNAWEVINQMIASNFEANEVIYNTIINGLCKVGQTSKAKEMLQNLIKEKRY-SMG 589

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
                 +YN +I+ F K G   S    +  +  +  +P+ VTFTSLI
Sbjct: 590 ----CTSYNSIIDGFFKEGDTDSAVEAYREMSENGISPNVVTFTSLI 632



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/284 (18%), Positives = 104/284 (36%), Gaps = 39/284 (13%)

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
            +N L+N + +  R+ +       ++     P      +++  L   + I EA  ++ K+
Sbjct: 171 AFNYLLNAYIRNRRMDYAVDCFNLMVDRNVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKM 230

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE-MANGNGEFGVVCEPDAITYSTIIDG 245
            + G   D  T   L+    R      A+ +F   M+ G        EPD + +S  +  
Sbjct: 231 VLIGVAGDNVTTQLLMRASLRERKPEEAMKIFRRVMSRG-------AEPDGLLFSLAVQA 283

Query: 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVR-------VQCLCLNFLCLIDGLCKISK 298
            CK                  +  +     L+R       V      +  +I    K   
Sbjct: 284 ACK------------------MKDLVMALDLLREMREKGGVPASQETYTSVIVACVKEGN 325

Query: 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358
           ++ A ++   +   G+  +V+    LI G CN  ++ +   +      F R+   GL PD
Sbjct: 326 MEEAVKVKDEMVGFGIPMSVIAATSLITGFCNGNELGKALDF------FNRMEEEGLAPD 379

Query: 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
              ++++I  FCK   +     I+ R+      P +V    +I+
Sbjct: 380 KVMFSVMIEWFCKNMEMEKAVEIYKRMKSVGIAPSSVLVHKMIQ 423


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 141/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +    L P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M + +         D ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMEIYKQMLSQS------LSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYM 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PSVVT 418



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 129/289 (44%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V SFN L     K    D    L   +  +G+ PD YTY++LI
Sbjct: 155 AQSVFD-AITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 ADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLETAFEYRKRMI----KENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P + T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLLKEMQRDGYMPSVVT 418


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 148/346 (42%), Gaps = 53/346 (15%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDRYTYNILINCFCKMGRVSHGFVVL 148
           VTS+NI+   L      D    L++ L     L PD  T++ +I+  C+ G  +    +L
Sbjct: 369 VTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQIL 428

Query: 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
                S    D  +++S+I  LC + R+ +A  L+ K+ +   + +   YN LING C+ 
Sbjct: 429 EEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQA 488

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
                A+ ++ +MA  +      C P  ITY+T+I GLCK              +   L 
Sbjct: 489 SKFSDAIRVYSQMAEND------CSPTTITYNTLIHGLCK--------------AEKYLE 528

Query: 269 KMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
              F   ++   C+     +  LI GLC+  K+  A  L+  +   GL  +VV +NILI 
Sbjct: 529 ASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIH 588

Query: 327 GLCNDGQMDETKH-------------------------YET-----VFLLFKRLNSTGLF 356
           GLC+ G++DE                            YET        L+  +   GL 
Sbjct: 589 GLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLV 648

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           PD+ +YN  I   C   R   G  +   +L S   P A+T+  L++
Sbjct: 649 PDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNILVR 694



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 150/357 (42%), Gaps = 37/357 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ V++ ++    + P + ++N++   L K   +     +++R+      PD  TY  +
Sbjct: 247 KAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTM 306

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  C+   V     V   ++++   PD V + SL+K  C   R+ EA   +  + V G 
Sbjct: 307 IHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGI 366

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +V +YN ++ GL   G    A +L+E +   +        PD +T+ST+I GLC E G
Sbjct: 367 R-NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDS-----LSPDMVTFSTMIHGLC-EKG 419

Query: 252 SAN---------------FLGFSCMASFSALNKMAFYFPLVRV-QCLCLN--------FL 287
            AN                  FS  +  S L K       V++ + + ++        + 
Sbjct: 420 FANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYN 479

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            LI+G C+ SK   A  ++  +      P  +TYN LI GLC   +  E   +    L  
Sbjct: 480 ALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREML-- 537

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                 G   D+ TY  LI   C+  ++     ++ +IL      D V    LI  L
Sbjct: 538 ----EKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGL 590



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 134/285 (47%), Gaps = 23/285 (8%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           S++ +   L K    D  + L++++++    P+ + YN LIN FC+  + S    V  ++
Sbjct: 442 SYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQM 501

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
             +  +P  +T+ +LI  LC   + +EA+    ++   GC LDV TY +LI GLCR    
Sbjct: 502 AENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKI 561

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             AL L+ ++ +         + D + ++ +I GLC  AG  +          S + +  
Sbjct: 562 DGALALWNQILDKG------LQTDVVMHNILIHGLC-SAGKVD----EASQLLSEMKEKN 610

Query: 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
              P V      + +  L+DG  +      A  L+ ++   GL+P++++YN  I+GLC+ 
Sbjct: 611 NCCPNV------VTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSC 664

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
            +  E         L   + ++G+ P   T+NIL+    K G + 
Sbjct: 665 NRTPEGVQ------LLNEMLASGIIPTAITWNILVRAVIKYGPIQ 703



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 151/344 (43%), Gaps = 31/344 (9%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF---- 122
           ++ P+ AL  F  + +     P V S N L     + + +    + F  L+  G F    
Sbjct: 97  ALMPDAALAAFRRLPSFLGCNPGVRSHNALLDAFVRARRFSDADAFFASLS-HGAFGRRI 155

Query: 123 -PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+  TYNI++   C  G +     +   +      PD +T+++L+      +R+  A  
Sbjct: 156 APNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALY 215

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L  ++  +  + D   YN L+ G  R G    A+ ++E++    G       P+  TY+ 
Sbjct: 216 LLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPG-----ASPNLATYNV 270

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           ++DGLCK            +  F     +         Q   + +  +I GLC+ + +  
Sbjct: 271 MLDGLCK------------LGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDS 318

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  ++  + + GL+P+VV YN L++G C+ G++ E   +      +  ++ +G+  ++ +
Sbjct: 319 AARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAWKF------WDSMSVSGI-RNVTS 371

Query: 362 YNILINCFCKIGRVSSGFVIFGRI-LPSCFTPDAVTFTSLIKIL 404
           YNI++      G V     ++  +      +PD VTF+++I  L
Sbjct: 372 YNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGL 415


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 133/293 (45%), Gaps = 25/293 (8%)

Query: 111 SLFKRLNLTGLFPDRYTYNIL-INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           ++F  +++ G+ PD  +Y ++ I CF + G++      L  +++  F PD  T T ++  
Sbjct: 203 NVFDEMSVRGVVPDSSSYKLMVIGCF-RDGKIQEADRWLTGMIQRGFIPDNATCTLILTA 261

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
           LC    +  A   F K+   G + ++  + +LI+GLC+ G    A  + EEM   NG   
Sbjct: 262 LCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVR-NG--- 317

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCL 289
              +P+  T++ +IDGLCK   +           F  L +   Y P V        +  +
Sbjct: 318 --WKPNVYTHTALIDGLCKRGWTEKAFRL-----FLKLVRSDTYKPNVHT------YTSM 364

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           I G CK  KL  A  LF  +   GL PNV TY  LI G C  G     + YE    L   
Sbjct: 365 IGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFG--RAYE----LMNL 418

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           +   G  P++YTYN  I+  CK  R    + +  +        D VT+T LI+
Sbjct: 419 MGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQ 471



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 155/358 (43%), Gaps = 45/358 (12%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N A+  F  M+++   +P + +F  L   L K         + + +   G  P+ YT+  
Sbjct: 269 NRAIWYFRKMIDL-GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTA 327

Query: 131 LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           LI+  CK G     F +  +++RS  + P+  T+TS+I   C E ++  A  LF++++  
Sbjct: 328 LIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQ 387

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249
           G   +V TY TLING C+ G    +     E+ N  G+ G +  P+  TY+  ID LCK+
Sbjct: 388 GLFPNVNTYTTLINGHCKAG----SFGRAYELMNLMGDEGFM--PNIYTYNAAIDSLCKK 441

Query: 250 AGSANFL-----GFSCMASFSALNKMAFYFPLVRVQC------LCLNFLC---------- 288
           + +          FSC      +     Y  L++ QC        L F C          
Sbjct: 442 SRAPEAYELLNKAFSCGLEADGVT----YTILIQEQCKQNDINQALAFFCRMNKTGFEAD 497

Query: 289 ------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
                 LI   C+  K+K +  LFQ +   GL+P   TY  +I   C +G +D    Y  
Sbjct: 498 MRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKY-- 555

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
               F  +   G  PD +TY  LI+  CK   V     ++  ++    +P  VT  +L
Sbjct: 556 ----FHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTL 609



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 147/325 (45%), Gaps = 38/325 (11%)

Query: 76  VFDYMLNMRPSRPPVTSFNIL-FGCL--AKTKHYDTVLS-LFKRLNLTGLFPDRYTYNIL 131
           VFD M ++R   P  +S+ ++  GC    K +  D  L+ + +R    G  PD  T  ++
Sbjct: 204 VFDEM-SVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQR----GFIPDNATCTLI 258

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +   C+ G V+       +++   F P+ + FTSLI  LC +  I +A  +  ++   G 
Sbjct: 259 LTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGW 318

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
           + +V+T+  LI+GLC+ G T  A  LF ++   +       +P+  TY+++I G CKE  
Sbjct: 319 KPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD-----TYKPNVHTYTSMIGGYCKE-- 371

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQS 308
                          LN+    F  ++ Q L  N   +  LI+G CK      A EL   
Sbjct: 372 -------------DKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNL 418

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +   G MPN+ TYN  I  LC   +  E   YE    L  +  S GL  D  TY ILI  
Sbjct: 419 MGDEGFMPNIYTYNAAIDSLCKKSRAPEA--YE----LLNKAFSCGLEADGVTYTILIQE 472

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPD 393
            CK   ++     F R+  + F  D
Sbjct: 473 QCKQNDINQALAFFCRMNKTGFEAD 497



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 119/297 (40%), Gaps = 26/297 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++  + G   K    +    LF R+   GLFP+  TY  LIN  CK G     + 
Sbjct: 355 KPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYE 414

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  +    F P+  T+ + I  LC +SR  EA  L  K    G E D  TY  LI   C
Sbjct: 415 LMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQC 474

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      AL  F  M N  G      E D    + +I   C++           M     
Sbjct: 475 KQNDINQALAFFCRM-NKTG-----FEADMRLNNILIAAFCRQKK---------MKESER 519

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           L ++     L+  +     +  +I   CK   + +A + F ++ R G +P+  TY  LI 
Sbjct: 520 LFQLVVSLGLIPTK---ETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLIS 576

Query: 327 GLCNDGQMDET-KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           GLC    +DE  K YE +          GL P   T   L   +CK    ++  ++ 
Sbjct: 577 GLCKKSMVDEACKLYEAMI-------DRGLSPPEVTRVTLAYEYCKRNDSANAMILL 626



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 125/288 (43%), Gaps = 29/288 (10%)

Query: 120 GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179
           GL P   T N ++    ++G + +   V   +      PD+ ++  ++     + +I EA
Sbjct: 177 GLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEA 236

Query: 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239
               T +   G   D  T   ++  LC  G    A+  F +M     + G   +P+ I +
Sbjct: 237 DRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMI----DLGF--KPNLINF 290

Query: 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAF--YFPLVRVQCLCLNFLCLIDGLCKIS 297
           +++IDGLCK+         S   +F  L +M    + P V           LIDGLCK  
Sbjct: 291 TSLIDGLCKKG--------SIKQAFEMLEEMVRNGWKPNVYTHT------ALIDGLCKRG 336

Query: 298 KLKIARELFQSLPRAG-LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
             + A  LF  L R+    PNV TY  +I G C + +++  +      +LF R+   GLF
Sbjct: 337 WTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAE------MLFSRMKEQGLF 390

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           P++ TY  LIN  CK G     + +   +    F P+  T+ + I  L
Sbjct: 391 PNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSL 438



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 124/272 (45%), Gaps = 25/272 (9%)

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           ++  F ++GR++    ++  +     TP ++T   +++       I  A  +F ++ V G
Sbjct: 153 MLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRG 212

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              D  +Y  ++ G  R G    A    +    G  + G +  PD  T + I+  LC E 
Sbjct: 213 VVPDSSSYKLMVIGCFRDGKIQEA----DRWLTGMIQRGFI--PDNATCTLILTALC-EN 265

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
           G  N      +  F  +  + F   L+       NF  LIDGLCK   +K A E+ + + 
Sbjct: 266 GLVN----RAIWYFRKMIDLGFKPNLI-------NFTSLIDGLCKKGSIKQAFEMLEEMV 314

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF-PDLYTYNILINCF 369
           R G  PNV T+  LI GLC  G        E  F LF +L  +  + P+++TY  +I  +
Sbjct: 315 RNGWKPNVYTHTALIDGLCKRGWT------EKAFRLFLKLVRSDTYKPNVHTYTSMIGGY 368

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK  +++   ++F R+      P+  T+T+LI
Sbjct: 369 CKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLI 400



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 9/168 (5%)

Query: 52  FLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLS 111
            ++E+CK   + DI     N+AL  F  M N       +   NIL     + K       
Sbjct: 469 LIQEQCK---QNDI-----NQALAFFCRM-NKTGFEADMRLNNILIAAFCRQKKMKESER 519

Query: 112 LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171
           LF+ +   GL P + TY  +I+C+CK G +         + R    PD+ T+ SLI  LC
Sbjct: 520 LFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLC 579

Query: 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            +S + EA  L+  +   G      T  TL    C+   +  A+ L E
Sbjct: 580 KKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLE 627


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 156/330 (47%), Gaps = 25/330 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL ++  M++    +  + S  +L G L K++  D    LF  +   GL PD  TY+ L
Sbjct: 404 EALKLYKEMIS-HGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTL 462

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  CK G V    ++  ++  +   P+++   +++  LC + +I +A   F  L     
Sbjct: 463 IHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNL 522

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
            LD+  YN +I+G  + G+T  A+ L++++    GE G+   P  +T+++++ G C    
Sbjct: 523 SLDIILYNIMIDGYIKRGNTREAVKLYKQL----GEKGI--SPTIVTFNSLMYGFCIN-- 574

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                        S   ++     L  ++   + +  L++  C+   ++   EL   +  
Sbjct: 575 ----------RKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKA 624

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
             + P  +TY ++I+GLC   ++ E+        L + +++ GL PD  +YN +I  FCK
Sbjct: 625 KAIGPTHITYTVVIKGLCKQWKLQESCQ------LLEDMDAVGLTPDQVSYNTIIQAFCK 678

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              +   F ++ ++L     P +VT+  LI
Sbjct: 679 ARDMRKAFQLYDKMLLHNLEPTSVTYNILI 708



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 150/339 (44%), Gaps = 37/339 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   S+NIL   L         L L   +   GL PD  TYNIL   F  +G ++  + +
Sbjct: 314 PDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLGLINGAWNI 373

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           + ++L     P+ VT+T LI   C    + EA  L+ ++   G +L + +   L+  LC+
Sbjct: 374 IQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCK 433

Query: 208 TGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAG-SANFLGFSCMAS-- 263
           +    VA  LF EM ANG         PD ITYST+I GLCK+       L +  M S  
Sbjct: 434 SRQVDVAFKLFCEMEANG-------LRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNR 486

Query: 264 -----------------FSALNKMAFYFPLVRVQCLCLNFL---CLIDGLCKISKLKIAR 303
                               +++   YF  +    L L+ +    +IDG  K    + A 
Sbjct: 487 IIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAV 546

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           +L++ L   G+ P +VT+N L+ G C + ++ + +       L   +   GL P+  TY 
Sbjct: 547 KLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARR------LLDTIKLHGLEPNAVTYT 600

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            L+N +C+ G + S   +   +      P  +T+T +IK
Sbjct: 601 TLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIK 639



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 137/302 (45%), Gaps = 24/302 (7%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 159
           L   +H + +  ++  + ++G     YT +I+++  C+  R     +         F P 
Sbjct: 221 LYNLRHSNIMWDVYNEIKVSGTPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPS 280

Query: 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219
            V+F +++   C    +  A + F  +   G   D ++YN LI+GLC  G    AL+L  
Sbjct: 281 VVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKN 340

Query: 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           +M N         EPD +TY+ +  G          LG     +++ + KM    P   +
Sbjct: 341 DMENHG------LEPDMVTYNILAKGF-------RLLGL-INGAWNIIQKMLIKGPNPNL 386

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
               + +  LI G C+I  ++ A +L++ +   G   ++++  +L+  LC   Q+D    
Sbjct: 387 ----VTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVD---- 438

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
               F LF  + + GL PDL TY+ LI+  CK G V    +++ ++  +   P+++   +
Sbjct: 439 --VAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGA 496

Query: 400 LI 401
           ++
Sbjct: 497 IL 498



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 139/331 (41%), Gaps = 29/331 (8%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           +G I      EA+ ++   L  +   P + +FN L       +       L   + L GL
Sbjct: 534 DGYIKRGNTREAVKLYK-QLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGL 592

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            P+  TY  L+N +C+ G +     +L  +      P  +T+T +IK LC + ++ E+  
Sbjct: 593 EPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQ 652

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L   +   G   D  +YNT+I   C+      A  L+++M   N       EP ++TY+ 
Sbjct: 653 LLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHN------LEPTSVTYNI 706

Query: 242 IIDGLC--KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299
           +I+G C   +   A+ L  S       LNK A              +  +I   C    +
Sbjct: 707 LINGFCVYGDLKDADNLLVSLQNRKVNLNKYA--------------YTTIIKAHCAKGDV 752

Query: 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359
             A   F+ +   G   ++  Y+ +I  LC    + E K++  + L      S G+ PD 
Sbjct: 753 DKAVVYFRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMML------SDGVCPDQ 806

Query: 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCF 390
             + +L+N F + G ++S F +   ++ S +
Sbjct: 807 DLFEVLLNAFHQCGHLNSEFELLAEMIKSGW 837



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 142/328 (43%), Gaps = 26/328 (7%)

Query: 76  VFDYMLNMRPSRPPVTSF--NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           ++D    ++ S  P + +  +I+   L +   +   +  F+        P   ++N +++
Sbjct: 230 MWDVYNEIKVSGTPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMS 289

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
            +CK+G V         +L+    PDA ++  LI  LC    + EA  L   +   G E 
Sbjct: 290 RYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEP 349

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           D+ TYN L  G    G    A N+ ++M            P+ +TY+ +I G C+     
Sbjct: 350 DMVTYNILAKGFRLLGLINGAWNIIQKMLIKGP------NPNLVTYTVLICGHCQIGNVE 403

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313
             L       +  +    F   ++           L+  LCK  ++ +A +LF  +   G
Sbjct: 404 EALKL-----YKEMISHGFQLSIISST-------VLLGSLCKSRQVDVAFKLFCEMEANG 451

Query: 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
           L P+++TY+ LI GLC  G++ +        LL++++ S  + P+   +  ++   C+ G
Sbjct: 452 LRPDLITYSTLIHGLCKQGEVQQA------ILLYEKMCSNRIIPNSLIHGAILMGLCEKG 505

Query: 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++S   + F  ++ S  + D + +  +I
Sbjct: 506 KISQARMYFDYLITSNLSLDIILYNIMI 533


>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 766

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 149/315 (47%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + +++ LF  L K+   +  LS+F  L   G   D  +YN LIN F     +     
Sbjct: 390 KPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACK 449

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++  +  +   P++ TF  LI   C   R+ +A  +FT +   G +L++FT N + +   
Sbjct: 450 LVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTCNIMADEFN 509

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R GH   AL L  E+     + G+V  P++ TY+ +I  LCKE  +     +  +     
Sbjct: 510 REGHFWEALKLINEVQ----DLGIV--PNSYTYNIVIKWLCKEQKTEK--AWEVLPVMLK 561

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            N     FP     C  +++  LIDG  K S    A  L+  + + G+ P++VTY +LI 
Sbjct: 562 NN----VFP-----C-AIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPPSIVTYTMLIN 611

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
              N  +M E       + LFK +   GL PD   +  +I  FCK+G + S + ++  + 
Sbjct: 612 MFSNRSKMQEA------YYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWALYEEMS 665

Query: 387 PSCFTPDAVTFTSLI 401
               +P+ VT+T LI
Sbjct: 666 QWGKSPNVVTYTCLI 680



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 148/380 (38%), Gaps = 85/380 (22%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK------------ 137
           + S N L  C A+    + + SLF+ L  +G  P+ +TY I++N +CK            
Sbjct: 213 ILSCNFLLNCFAEANQTEFIRSLFEELKDSGPSPNVFTYTIMMNYYCKGSFGKNIDIVKA 272

Query: 138 ------------------MGRVSHGFVVLG---------RILRSCFTP-DAVTFTSLIKD 169
                              G   HG    G         R LR    P ++  + ++I +
Sbjct: 273 TEVLEEMEMNGESPTVVTYGAYIHGLCRAGCVEFALRLIRDLRIRNQPLNSYCYNAVIHE 332

Query: 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229
            C    + EA  L   +R  G     ++Y+ LI+GLC+ G    AL+L EEM   N    
Sbjct: 333 FCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSN---- 388

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC- 288
              +P  +TYS++ DGLCK       L    ++ F  L    +   ++    L   F+  
Sbjct: 389 --VKPSLVTYSSLFDGLCKSG-----LTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQ 441

Query: 289 ---------------------------LIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321
                                      LI G CK  +L  A E+F  + + G+  N+ T 
Sbjct: 442 RDMGSACKLVHEMRMNGSVPNSFTFNRLIHGFCKRQRLDKALEVFTIMLKVGVQLNIFTC 501

Query: 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381
           NI+      +G      H+     L   +   G+ P+ YTYNI+I   CK  +    + +
Sbjct: 502 NIMADEFNREG------HFWEALKLINEVQDLGIVPNSYTYNIVIKWLCKEQKTEKAWEV 555

Query: 382 FGRILPSCFTPDAVTFTSLI 401
              +L +   P A+ + +LI
Sbjct: 556 LPVMLKNNVFPCAIHYNTLI 575



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 145/327 (44%), Gaps = 32/327 (9%)

Query: 82  NMRPSRPPVTSF--NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139
           ++R    P+ S+  N +     +         L + +   G+ P  Y+Y+ILI+  CK G
Sbjct: 313 DLRIRNQPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKG 372

Query: 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199
           +V     ++  +++S   P  VT++SL   LC       + ++F  L   G + DV +YN
Sbjct: 373 QVEKALDLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYN 432

Query: 200 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259
           TLING         A  L  EM   NG       P++ T++ +I G CK           
Sbjct: 433 TLINGFVLQRDMGSACKLVHEM-RMNGSV-----PNSFTFNRLIHGFCKR---------- 476

Query: 260 CMASFSALNKMAFYFPLVRVQCLCLN-FLC--LIDGLCKISKLKIARELFQSLPRAGLMP 316
                  L+K    F ++    + LN F C  + D   +      A +L   +   G++P
Sbjct: 477 -----QRLDKALEVFTIMLKVGVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVP 531

Query: 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376
           N  TYNI+I+ LC + + +  K +E + ++ K      +FP    YN LI+ + K    +
Sbjct: 532 NSYTYNIVIKWLCKEQKTE--KAWEVLPVMLK----NNVFPCAIHYNTLIDGYAKQSNPT 585

Query: 377 SGFVIFGRILPSCFTPDAVTFTSLIKI 403
              +++ ++L     P  VT+T LI +
Sbjct: 586 KALLLYAKMLKVGIPPSIVTYTMLINM 612



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 131/295 (44%), Gaps = 25/295 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL VF  ML +   +  + + NI+     +  H+   L L   +   G+ P+ YTYNI
Sbjct: 480 DKALEVFTIMLKV-GVQLNIFTCNIMADEFNREGHFWEALKLINEVQDLGIVPNSYTYNI 538

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +I   CK  +    + VL  +L++   P A+ + +LI     +S   +A  L+ K+   G
Sbjct: 539 VIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVG 598

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
               + TY  LIN          A  LF+EM       G+V  PD I ++ II G CK  
Sbjct: 599 IPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKK----GLV--PDEIIFTCIIAGFCKVG 652

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                      ++++   +M+ +     V    + + CLIDG  KI ++  A  LF  + 
Sbjct: 653 --------DMKSAWALYEEMSQWGKSPNV----VTYTCLIDGYFKIKRMDKADFLFNKMK 700

Query: 311 RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           R  + P+ +TY  LI G  + G  D  +       +F  +   G+FP+   Y  L
Sbjct: 701 RDNVTPDGLTYTALIFGYQSLGYSDRVRE------MFNEMKENGVFPNYTAYATL 749



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 130/313 (41%), Gaps = 29/313 (9%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N+L    A+         +F +    GL  +  + N L+NCF +  +      +   +  
Sbjct: 182 NVLIKVFAENNMLVDAADVFVQARRFGLELNILSCNFLLNCFAEANQTEFIRSLFEELKD 241

Query: 154 SCFTPDAVTFTSLIKDLCAES-----RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
           S  +P+  T+T ++   C  S      I++A  +  ++ + G    V TY   I+GLCR 
Sbjct: 242 SGPSPNVFTYTIMMNYYCKGSFGKNIDIVKATEVLEEMEMNGESPTVVTYGAYIHGLCRA 301

Query: 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268
           G    AL L  ++   N      C      Y+ +I   C+              +F  L 
Sbjct: 302 GCVEFALRLIRDLRIRNQPLNSYC------YNAVIHEFCRNG--------ELHEAFELLE 347

Query: 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
            M  +     +     ++  LIDGLCK  +++ A +L + + ++ + P++VTY+ L  GL
Sbjct: 348 DMRSH----GISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQSNVKPSLVTYSSLFDGL 403

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C  G        E    +F  L + G   D+ +YN LIN F     + S   +   +  +
Sbjct: 404 CKSGLT------EISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGSACKLVHEMRMN 457

Query: 389 CFTPDAVTFTSLI 401
              P++ TF  LI
Sbjct: 458 GSVPNSFTFNRLI 470


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 132/278 (47%), Gaps = 24/278 (8%)

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
           D Y++ I+I   C+ G +   F +L  +    F+P+ V +T+LI   C +  I +A  LF
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            ++  FG   + +TY  LI+GL + G       ++E+M     E GV   P+  TY+ ++
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQ----EHGVF--PNLHTYNCVM 275

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303
           + LCK+  + +        +F   ++M        V C  + +  LI GLC+  K   A 
Sbjct: 276 NQLCKDGRTKD--------AFKVFDEMRER----GVSCNIVTYNTLIGGLCREMKANEAN 323

Query: 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363
           E+   +   G+ PN++TYN LI G C        +       L + L S GL P L TYN
Sbjct: 324 EVMDQMKSDGINPNLITYNTLIDGFCG------VRKLGKALSLCRDLKSRGLSPSLVTYN 377

Query: 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           IL++ FCK G  S    +   +      P  VT+T LI
Sbjct: 378 ILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILI 415



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 145/329 (44%), Gaps = 30/329 (9%)

Query: 77  FDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           FD ++ +R     P V  +  L     K    +    LF  +   GL  + +TY +LI+ 
Sbjct: 183 FDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHG 242

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
             K G    GF +  ++      P+  T+  ++  LC + R  +A  +F ++R  G   +
Sbjct: 243 LFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCN 302

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGS 252
           + TYNTLI GLCR      A  + ++M +          P+ ITY+T+IDG C  ++ G 
Sbjct: 303 IVTYNTLIGGLCREMKANEANEVMDQMKSDG------INPNLITYNTLIDGFCGVRKLGK 356

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
           A       ++    L        LV        +  L+ G CK      A ++ + +   
Sbjct: 357 A-------LSLCRDLKSRGLSPSLV-------TYNILVSGFCKKGDTSGAGKVVKEMEER 402

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+ P+ VTY ILI        M      E    L   +   GL PD++TY++LI+ FC  
Sbjct: 403 GIKPSKVTYTILIDTFARSDNM------EKAIQLRSSMEELGLTPDVHTYSVLIHGFCIK 456

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           GR++    +F  ++   F P+ V + +++
Sbjct: 457 GRMNEASRLFKSMVEKKFEPNEVIYNTMV 485



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 117/282 (41%), Gaps = 25/282 (8%)

Query: 67  SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY 126
            +  NEA  V D M +     P + ++N L       +     LSL + L   GL P   
Sbjct: 316 EMKANEANEVMDQMKS-DGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLV 374

Query: 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186
           TYNIL++ FCK G  S    V+  +      P  VT+T LI        + +A  L + +
Sbjct: 375 TYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSM 434

Query: 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
              G   DV TY+ LI+G C  G    A  LF+ M           EP+ + Y+T++ G 
Sbjct: 435 EELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKK------FEPNEVIYNTMVLGY 488

Query: 247 CKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305
           CKE  S   L  F  M        +A Y  ++ V             LCK  K K A  L
Sbjct: 489 CKEGSSYRALRLFREMEEKELPPNVASYRYMIEV-------------LCKERKSKEAEGL 535

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQ---MDETKHYETVF 344
            + +  +G+ P+    N++ R   ND     MDE +    VF
Sbjct: 536 VEKMIDSGIGPSDSILNLISRAK-NDSHSRSMDEEEPASMVF 576


>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 712

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 154/340 (45%), Gaps = 28/340 (8%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDT----VLSLFKRLNLTGLFPDR 125
           P + L  FD++ N   S     SF ++   L + ++ +     + S+ KR N      DR
Sbjct: 84  PADGLRFFDWVYNKGFSHKE-QSFFLMLEFLGRARNLNAARNFLFSIEKRSNGCVKLQDR 142

Query: 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185
           Y +N LI  +   G       +   + +   +P  +TF SL+  L    R   A  +F +
Sbjct: 143 Y-FNSLIRSYGNAGLFQESVNLFQTMKKMGISPSVLTFNSLLSILLKRGRTGMAHDMFDE 201

Query: 186 LR-VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244
           +R  +G   D +T+NTLI+G C+      A  +F+EM          C PD +TY+TIID
Sbjct: 202 MRRTYGVTPDSYTFNTLISGFCKNSMVDQAFTIFKEME------LYSCNPDVVTYNTIID 255

Query: 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304
           GLC+ AG           + + LN M        V    +++  L+ G C   ++  A  
Sbjct: 256 GLCR-AGKVKI-------AHNLLNGM--LKKATAVHPNIVSYTTLLRGYCMKQEIDEALL 305

Query: 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364
           +F  +   GL PN VTYN LI+GL    + DE K +     L      T   PD  T+NI
Sbjct: 306 VFHEMLTRGLKPNAVTYNTLIKGLSEAHRYDEIKGF-----LIGGDAFTTFSPDACTFNI 360

Query: 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           LI   C  G + +   +F  +L     PD+ +++ LI+ L
Sbjct: 361 LIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTL 400



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 154/369 (41%), Gaps = 60/369 (16%)

Query: 76  VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135
           +FD M       P   +FN L     K    D   ++FK + L    PD  TYN +I+  
Sbjct: 198 MFDEMRRTYGVTPDSYTFNTLISGFCKNSMVDQAFTIFKEMELYSCNPDVVTYNTIIDGL 257

Query: 136 CKMGRVSHGFVVLGRILR--SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
           C+ G+V     +L  +L+  +   P+ V++T+L++  C +  I EA  +F ++   G + 
Sbjct: 258 CRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDEALLVFHEMLTRGLKP 317

Query: 194 DVFTYNTLINGL------------------------------------CRTGHTIVALNL 217
           +  TYNTLI GL                                    C  GH   A+ +
Sbjct: 318 NAVTYNTLIKGLSEAHRYDEIKGFLIGGDAFTTFSPDACTFNILIKAHCDAGHLDAAMKV 377

Query: 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLC--KEAGSANFLGFSCMASFSALNKMAFYFP 275
           F+EM N      +   PD+ +YS +I  LC   E   A  L       F+ L +      
Sbjct: 378 FQEMLN------MKLHPDSASYSVLIRTLCLRNEFDKAETL-------FNELFEKEVLLG 424

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
               + L   +  + + LC   K K A ++F+ L + G   +  +Y  LI GLC +G+  
Sbjct: 425 KNECKPLAAAYNLMFEYLCANGKAKQAEKVFRQLMKRG-AQDPSSYRTLITGLCREGKFK 483

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
               YE + L+ +R       PD  TY +LI+   KIG          R+L S + P A 
Sbjct: 484 AA--YELLVLMLRR----EFVPDPETYEVLIDGLLKIGEALLAHDTLQRMLRSSYLPVAT 537

Query: 396 TFTSLIKIL 404
           TF S++  L
Sbjct: 538 TFHSVLAEL 546



 Score = 40.4 bits (93), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 2/99 (2%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A  VF  ++  R ++ P +S+  L   L +   +     L   +      PD  TY +L
Sbjct: 450 QAEKVFRQLMK-RGAQDP-SSYRTLITGLCREGKFKAAYELLVLMLRREFVPDPETYEVL 507

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
           I+   K+G        L R+LRS + P A TF S++ +L
Sbjct: 508 IDGLLKIGEALLAHDTLQRMLRSSYLPVATTFHSVLAEL 546


>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
 gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 159/360 (44%), Gaps = 37/360 (10%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKR-LNLTGLFPDRYTY 128
           P  AL  F  +      +P V   N L     + K Y  V S  K   +  G+ P+ +++
Sbjct: 102 PRLALKTFTRIKEEFSMQPSVKLLNTLLNVFVQNKRYHLVGSTLKNCKDKYGVLPNVFSF 161

Query: 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188
           NILI   CK   V +   V   +      P+ VT+T+++    +   ++ A  +F+++  
Sbjct: 162 NILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVNAEKVFSEISD 221

Query: 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
            G   D  TY  L+ G C+ G    A+ + + M     E+  V EP+ +TY  +ID  CK
Sbjct: 222 KGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNM-----EYNGV-EPNEVTYGVMIDAYCK 275

Query: 249 EAGSAN------------FLGFS--CMASFSAL-------NKMAFYFPLVRVQCLCLNFL 287
           E  S              FL  S  C      L       N    +  ++   CL  N +
Sbjct: 276 EKKSGEARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAI 335

Query: 288 --CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345
              LI  LCK  K+  AR+LF    + G +P+++TYN LI G+C  G+++E         
Sbjct: 336 MSTLIHWLCKEGKVWEARKLFDEFEQ-GTIPSLMTYNTLIAGMCERGELNEAGR------ 388

Query: 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILE 405
           L+  +      P+ +TYN+LI  F K G V  G  I   +L +   P+  T+T LI+ L+
Sbjct: 389 LWDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLIEGLQ 448



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 119/288 (41%), Gaps = 25/288 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P  T++ +L     K       + +   +   G+ P+  TY ++I+ +CK  +      +
Sbjct: 226 PDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDAYCKEKKSGEARNL 285

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +L   F P +     +I  LC + ++  A  L+ ++    C  D    +TLI+ LC+
Sbjct: 286 IDDMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAIMSTLIHWLCK 345

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  LF+E   G         P  +TY+T+I G+C E G  N  G          
Sbjct: 346 EGKVWEARKLFDEFEQGT-------IPSLMTYNTLIAGMC-ERGELNEAG---------- 387

Query: 268 NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                +  +V  +C      +  LI G  K   +K    + + +   G +PN  TY +LI
Sbjct: 388 ---RLWDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLI 444

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373
            GL   G   +     ++ +  + +++     DL+ + I+ N  C  G
Sbjct: 445 EGLQESGMEGDVDKVMSMAMASREVDADSW--DLFLHKIVGNLDCGTG 490


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 151/335 (45%), Gaps = 34/335 (10%)

Query: 76  VFDYMLNM-RPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
           V + M+ M R   PP V +FN L   L +   ++ V     ++   G  PD   Y  +I+
Sbjct: 232 VEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIID 291

Query: 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             CK G       +L R+      P+ V + +++K LC+  R  EA  L  ++    C L
Sbjct: 292 GICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPL 351

Query: 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
           D  T+N L++  C+ G     + L E+M     E G  C PD ITY+T+I+G CKE    
Sbjct: 352 DDVTFNILVDFFCQNGLVDRVIELLEQML----EHG--CIPDVITYTTVINGFCKE---- 401

Query: 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLC----LNFLCLIDGLCKISKLKIARELFQSL 309
              G    A     N  A         C C    +++  ++ GLC+  +   A+EL   +
Sbjct: 402 ---GLVDEAVMLLKNMSA---------CGCKPNTISYTIVLKGLCRAERWVDAQELISHM 449

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            + G +PN VT+N LI  +C  G +      E    L K++   G  PDL +Y+ +I+  
Sbjct: 450 IQQGCLPNPVTFNTLINFMCKKGLV------EQAIELLKQMLVNGCSPDLISYSTVIDGL 503

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            K G+      +   ++    TP+ + ++S+   L
Sbjct: 504 GKAGKTEEALELLNVMINKGITPNTIIYSSMASAL 538



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 158/337 (46%), Gaps = 33/337 (9%)

Query: 72  EALCVFDYM-LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +AL V D M L    + PP+    +   C  +   + + +   + L+  G   D    N+
Sbjct: 126 DALTVLDEMPLRGCAATPPMCHVILEAAC--RGGGFRSAVRALQVLHAKGCTLDSGNCNL 183

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +++  C+ G V  G  +L ++      PD V++ +++K LC   R  +   L  ++   G
Sbjct: 184 VVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVG 243

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG---EFGVVCEPDAITYSTIIDGLC 247
           C  +V T+NTLI  LCR G       LFE++        E G  C PD   Y+TIIDG+C
Sbjct: 244 CPPNVATFNTLIAYLCRNG-------LFEQVHEALSQMPEHG--CTPDLRMYATIIDGIC 294

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQ 307
           K+       G   +A+   L++M  Y   ++   +C N   ++ GLC   + + A +L  
Sbjct: 295 KD-------GHHEVAN-DILSRMPSYG--LKPNVVCYNT--VLKGLCSAERWEEAEDLLA 342

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            + +     + VT+NIL+   C +G +D       V  L +++   G  PD+ TY  +IN
Sbjct: 343 EMFQEDCPLDDVTFNILVDFFCQNGLVDR------VIELLEQMLEHGCIPDVITYTTVIN 396

Query: 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            FCK G V    ++   +      P+ +++T ++K L
Sbjct: 397 GFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGL 433



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 129/271 (47%), Gaps = 31/271 (11%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151
           +FNIL     +    D V+ L +++   G  PD  TY  +IN FCK G V    ++L  +
Sbjct: 355 TFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNM 414

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
                 P+ +++T ++K LC   R ++A  L + +   GC  +  T+NTLIN +C+ G  
Sbjct: 415 SACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLV 474

Query: 212 IVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA----------------N 254
             A+ L ++M  NG       C PD I+YST+IDGL K   +                 N
Sbjct: 475 EQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPN 527

Query: 255 FLGFSCMASF----SALNKMAFYFPLVR---VQCLCLNFLCLIDGLCKISKLKIARELFQ 307
            + +S MAS        +K+   F  ++   V+     +  +I  LCK  +   A + F 
Sbjct: 528 TIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFA 587

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
            +   G MPN  TY ILIRGL ++G + E +
Sbjct: 588 YMVSNGCMPNESTYTILIRGLASEGLVREAQ 618



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 146/341 (42%), Gaps = 27/341 (7%)

Query: 76  VFDYMLNMRPS---RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           V + +L+  PS   +P V  +N +   L   + ++    L   +       D  T+NIL+
Sbjct: 301 VANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILV 360

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           + FC+ G V     +L ++L     PD +T+T++I   C E  + EA  L   +   GC+
Sbjct: 361 DFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCK 420

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            +  +Y  ++ GLCR    + A  L   M          C P+ +T++T+I+ +CK+   
Sbjct: 421 PNTISYTIVLKGLCRAERWVDAQELISHMIQQG------CLPNPVTFNTLINFMCKKGLV 474

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +   L +M        +    +++  +IDGL K  K + A EL   +   
Sbjct: 475 EQ--------AIELLKQMLVNGCSPDL----ISYSTVIDGLGKAGKTEEALELLNVMINK 522

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
           G+ PN + Y+ +   L  +G+ D+      +  +F  +    +  D   YN +I+  CK 
Sbjct: 523 GITPNTIIYSSMASALSREGRTDK------IIQMFDSIQDATVRSDAALYNAVISSLCKR 576

Query: 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413
                    F  ++ +   P+  T+T LI+ L      R+ 
Sbjct: 577 WETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREA 617



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 142/324 (43%), Gaps = 32/324 (9%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N++   + +    D  + L ++L   G  PD  +YN ++   C   R      ++  ++R
Sbjct: 182 NLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVR 241

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
               P+  TF +LI  LC      +     +++   GC  D+  Y T+I+G+C+ GH  V
Sbjct: 242 VGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEV 301

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
           A ++   M +    +G+  +P+ + Y+T++ GLC           S      A + +A  
Sbjct: 302 ANDILSRMPS----YGL--KPNVVCYNTVLKGLC-----------SAERWEEAEDLLAEM 344

Query: 274 F----PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
           F    PL  V      F  L+D  C+   +    EL + +   G +P+V+TY  +I G C
Sbjct: 345 FQEDCPLDDV-----TFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFC 399

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
            +G +DE        +L K +++ G  P+  +Y I++   C+  R      +   ++   
Sbjct: 400 KEGLVDEA------VMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQG 453

Query: 390 FTPDAVTFTSLIKILEINSFFRQV 413
             P+ VTF +LI  +       Q 
Sbjct: 454 CLPNPVTFNTLINFMCKKGLVEQA 477



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 139/352 (39%), Gaps = 85/352 (24%)

Query: 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173
           + L+  G       YN +I  +C+ G+V+    +   +      P+A T+  +++ LCA 
Sbjct: 65  RALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVP---VPPNAYTYFPIVRSLCAR 121

Query: 174 SRIMEAAALFTK-----------------------------------LRVFGCELDVFTY 198
             I +A  +  +                                   L   GC LD    
Sbjct: 122 GLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNC 181

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-------EAG 251
           N +++ +C  G     + L  ++ +    FG  CEPD ++Y+ ++ GLC        E  
Sbjct: 182 NLVVSAICEQGCVDEGVELLRKLPS----FG--CEPDIVSYNAVLKGLCMAKRWDDVEEL 235

Query: 252 SANFLGFSCMASFSALNKMAFYF----------------------PLVRVQCLCLNFLCL 289
               +   C  + +  N +  Y                       P +R+      +  +
Sbjct: 236 MVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRM------YATI 289

Query: 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKR 349
           IDG+CK    ++A ++   +P  GL PNVV YN +++GLC+  + +E +       L   
Sbjct: 290 IDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAED------LLAE 343

Query: 350 LNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           +       D  T+NIL++ FC+ G V     +  ++L     PD +T+T++I
Sbjct: 344 MFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVI 395



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 98/253 (38%), Gaps = 34/253 (13%)

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222
            ++LI+ LCA  R  +AA     L   G    V  YN +I G CR G    A  L     
Sbjct: 47  LSALIRSLCAAGRTADAA---RALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAA-- 101

Query: 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL 282
                  V   P+A TY  I+  LC     A+ L        + L++M          C 
Sbjct: 102 -------VPVPPNAYTYFPIVRSLCARGLIADAL--------TVLDEMPLR------GCA 140

Query: 283 CLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
               +C  +++  C+    + A    Q L   G   +    N+++  +C  G +DE    
Sbjct: 141 ATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVE- 199

Query: 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                L ++L S G  PD+ +YN ++   C   R      +   ++     P+  TF +L
Sbjct: 200 -----LLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTL 254

Query: 401 IKILEINSFFRQV 413
           I  L  N  F QV
Sbjct: 255 IAYLCRNGLFEQV 267



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 52/134 (38%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S++ +   L K    +  L L   +   G+ P+   Y+ + +   + GR      +
Sbjct: 491 PDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQM 550

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              I  +    DA  + ++I  LC       A   F  +   GC  +  TY  LI GL  
Sbjct: 551 FDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLAS 610

Query: 208 TGHTIVALNLFEEM 221
            G    A +L  E+
Sbjct: 611 EGLVREAQDLLSEL 624


>gi|125539212|gb|EAY85607.1| hypothetical protein OsI_06979 [Oryza sativa Indica Group]
          Length = 538

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 156/354 (44%), Gaps = 44/354 (12%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL  FD ML    + P  +S NIL    A+   +D    L  +   +G+ PD  TY+ L
Sbjct: 112 EALKAFDEMLASGVA-PNASSQNILIKMHARRSEFDLAWELIHK---SGVEPDVGTYSTL 167

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I   C+ G+V   + VL  +L     P   T+T +++  C + RI+EA  L  ++   GC
Sbjct: 168 IAGLCRAGKVVEAWGVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVEAKLLMAEMERLGC 227

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +V TYN LI  LC          +  E +  +       +P  +TY+  ++GLCK+  
Sbjct: 228 LPNVVTYNVLIRALCDDDKFDEVEQVLMESSTKD------WKPSTVTYNIYMNGLCKKGK 281

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLC------------------------LNFL 287
           +   L    +     L   A+ + ++ + CLC                        + + 
Sbjct: 282 AKEALELLDVMLGEGLEPTAYTWSIL-LNCLCHSSRLLDAIYLLERSTELKWYAGVVAYN 340

Query: 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
            ++  LC++ K +   +L   + + G+ PN  T+NILIR LC  G+    K         
Sbjct: 341 TVMSSLCEMGKWRGIMKLLTDMIKKGIEPNTRTFNILIRSLCVGGKSSLAKSL------- 393

Query: 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
             ++S G   ++ TYNIL++ F   G+++    +   +      PD VT+T +I
Sbjct: 394 --IHSQGFAANVVTYNILLHWFYYHGKLTEANRLISVMEEKNIAPDEVTYTIII 445



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 122/320 (38%), Gaps = 69/320 (21%)

Query: 92  SFNILFGCLAKTKHYDTVLSLFKRLNLT-------GLFPDRYTYNILINCFCKMGRVSHG 144
            +N+    LA     D V+++F  L  T       G  P+   YN L+N   + GR    
Sbjct: 54  DYNVAMKALALAGDVDEVVAVFSELKWTAADGGDGGAPPNVLCYNTLVNALAEAGREGEA 113

Query: 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204
                 +L S   P+A +   LIK     S    A  L  K    G E DV TY+TLI G
Sbjct: 114 LKAFDEMLASGVAPNASSQNILIKMHARRSEFDLAWELIHK---SGVEPDVGTYSTLIAG 170

Query: 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASF 264
           LCR G  + A  + + M   N      C P   TY+ I+   C++               
Sbjct: 171 LCRAGKVVEAWGVLDWMLEKN------CRPMVQTYTPIVQAYCRDG-------------- 210

Query: 265 SALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
                                            ++  A+ L   + R G +PNVVTYN+L
Sbjct: 211 ---------------------------------RIVEAKLLMAEMERLGCLPNVVTYNVL 237

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           IR LC+D + DE +       +    ++    P   TYNI +N  CK G+      +   
Sbjct: 238 IRALCDDDKFDEVEQ------VLMESSTKDWKPSTVTYNIYMNGLCKKGKAKEALELLDV 291

Query: 385 ILPSCFTPDAVTFTSLIKIL 404
           +L     P A T++ L+  L
Sbjct: 292 MLGEGLEPTAYTWSILLNCL 311



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 121/328 (36%), Gaps = 67/328 (20%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N+L   L     +D V  +    +     P   TYNI +N  CK G+      +
Sbjct: 229 PNVVTYNVLIRALCDDDKFDEVEQVLMESSTKDWKPSTVTYNIYMNGLCKKGKAKEALEL 288

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +L     P A T++ L+  LC  SR+++A  L  +         V  YNT+++ LC 
Sbjct: 289 LDVMLGEGLEPTAYTWSILLNCLCHSSRLLDAIYLLERSTELKWYAGVVAYNTVMSSLCE 348

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G     + L  +M           EP+  T++ +I  LC    S+              
Sbjct: 349 MGKWRGIMKLLTDMIKKG------IEPNTRTFNILIRSLCVGGKSS-------------- 388

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                            +A+ L  S    G   NVVTYNIL+  
Sbjct: 389 ---------------------------------LAKSLIHS---QGFAANVVTYNILLHW 412

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
               G++ E         L   +    + PD  TY I+I+  C+  +  +    F + L 
Sbjct: 413 FYYHGKLTEANR------LISVMEEKNIAPDEVTYTIIIDGLCRERKFDAATACFLKSLT 466

Query: 388 SCFTPDAVT--FTSLI---KILEINSFF 410
           S  + D +T     L+   KI EIN  F
Sbjct: 467 SGLSMDVLTVLLNRLVYADKIWEINRIF 494



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 95/258 (36%), Gaps = 69/258 (26%)

Query: 163 FTSLIKDLCAESRIMEAAALFTKLRVF-------GCELDVFTYNTLINGLCRTGHTIVAL 215
           +   +K L     + E  A+F++L+         G   +V  YNTL+N L   G    AL
Sbjct: 55  YNVAMKALALAGDVDEVVAVFSELKWTAADGGDGGAPPNVLCYNTLVNALAEAGREGEAL 114

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
             F+EM                    +  G+   A S N L                   
Sbjct: 115 KAFDEM--------------------LASGVAPNASSQNIL------------------- 135

Query: 276 LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                         I    + S+  +A EL     ++G+ P+V TY+ LI GLC  G++ 
Sbjct: 136 --------------IKMHARRSEFDLAWELIH---KSGVEPDVGTYSTLIAGLCRAGKVV 178

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
           E       + +   +      P + TY  ++  +C+ GR+    ++   +      P+ V
Sbjct: 179 EA------WGVLDWMLEKNCRPMVQTYTPIVQAYCRDGRIVEAKLLMAEMERLGCLPNVV 232

Query: 396 TFTSLIKILEINSFFRQV 413
           T+  LI+ L  +  F +V
Sbjct: 233 TYNVLIRALCDDDKFDEV 250


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 155/373 (41%), Gaps = 58/373 (15%)

Query: 84  RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143
           R + P V ++N +   L K         L   +    L PD  +YN LI  + ++G +  
Sbjct: 301 RGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGE 360

Query: 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203
            F++   +      P  VT+ +LI  LC    +  A  L  ++   G + DVFT+ T + 
Sbjct: 361 AFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVR 420

Query: 204 GLCRTGHTIVALNLFEEMANGN-------------GE---------FGVVCE-------P 234
           G C+ G+  +A  LF+EM N               GE         FG+  E       P
Sbjct: 421 GFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPP 480

Query: 235 DAITYSTIIDGL-----CKEAGSA------NFLGFSCMASFSALNKMAFYFPLVRVQCLC 283
           D ITY+  IDGL      KEA         N L    +   S ++       L + + L 
Sbjct: 481 DLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALF 540

Query: 284 LNFL------------CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331
           L  L             LI       +LK+A   F  +   G+ PNV+TYN LI GLC  
Sbjct: 541 LEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKV 600

Query: 332 GQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
            +MD+  ++      F  + + G+ P+ YTY ILIN  C +G       ++  +L     
Sbjct: 601 RKMDQAYNF------FAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQ 654

Query: 392 PDAVTFTSLIKIL 404
           PD+ T  SL+K L
Sbjct: 655 PDSCTHRSLLKHL 667



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 135/317 (42%), Gaps = 30/317 (9%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++N +     K       L L  ++   G  P+  TYN+L+N     G +     +
Sbjct: 200 PTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKEL 259

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +LR        T+  LI+  C + +I EA+ L  ++   G    V TYNT++ GLC+
Sbjct: 260 IQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCK 319

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    A  L + M N N        PD ++Y+T+I G  +                  +
Sbjct: 320 WGRVSDARKLLDVMVNKN------LMPDLVSYNTLIYGYTR---------------LGNI 358

Query: 268 NKMAFYFPLVRVQCLC---LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324
            +    F  +R + L    + +  LIDGLC++  L +A  L   + + G  P+V T+   
Sbjct: 359 GEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTF 418

Query: 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384
           +RG C  G +   K       LF  + + GL PD + Y   I    K+G  S  F +   
Sbjct: 419 VRGFCKMGNLPMAKE------LFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEE 472

Query: 385 ILPSCFTPDAVTFTSLI 401
           +L   F PD +T+   I
Sbjct: 473 MLARGFPPDLITYNVFI 489



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 9/186 (4%)

Query: 63  GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF 122
           G++    P++A  + + ML  R   P + ++N+    L K  +      L K++   GL 
Sbjct: 456 GELKLGDPSKAFGMQEEML-ARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLV 514

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           PD  TY  +I+     G +     +   +L     P  VT+T LI       R+  A   
Sbjct: 515 PDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILH 574

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYST 241
           F ++   G   +V TYN LINGLC+      A N F EM A G         P+  TY+ 
Sbjct: 575 FFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKG-------ISPNKYTYTI 627

Query: 242 IIDGLC 247
           +I+  C
Sbjct: 628 LINENC 633



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 58/137 (42%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V ++ +L    A        +  F  ++  G+ P+  TYN LIN  CK+ ++   +  
Sbjct: 550 PSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNF 609

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              +     +P+  T+T LI + C      EA  L+  +     + D  T+ +L+  L +
Sbjct: 610 FAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHLNK 669

Query: 208 TGHTIVALNLFEEMANG 224
                V  +L   +A G
Sbjct: 670 DYKLHVVRHLENVIAAG 686



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356
           + + +ARE++  +   G+ P VVTYN ++   C  G + E      + LLF+ + + G  
Sbjct: 181 NNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEA-----LQLLFQ-MQAMGCS 234

Query: 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
           P+  TYN+L+N     G +     +   +L         T+  LI+
Sbjct: 235 PNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIR 280


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 167/379 (44%), Gaps = 69/379 (18%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            EAL +F+ M   R + P V ++NIL   L +    +  L +   +   GLFP+  T NI
Sbjct: 142 EEALRIFEEM--KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNI 199

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL---- 186
           +I+  CK  ++     +   +     TP+AVTF+SLI  L    R+ +A +L+ K+    
Sbjct: 200 MIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCG 259

Query: 187 ------------RVF-------------------GCELDVFTYNTLINGLCRTGHTIVAL 215
                       R F                   GC  D+   NT ++ + + G T    
Sbjct: 260 HVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGR 319

Query: 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            LF E+ N +G       PDA +YS +I GL K AG AN                  ++ 
Sbjct: 320 ALFREI-NAHGFI-----PDARSYSILIHGLVK-AGLAN-------------ETYELFYA 359

Query: 276 LVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333
           +    C+     +  +IDG CK  K+  A +L + +   G  P VVTY  +I GL    +
Sbjct: 360 MKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDR 419

Query: 334 MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           +DE       ++LF+   S G+  ++  Y+ LI+ F K+GR+   ++I   ++    TP+
Sbjct: 420 LDEA------YMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 473

Query: 394 AVTFT----SLIKILEINS 408
             T+     +L+K  EIN 
Sbjct: 474 VYTWNCLLDALVKAEEINE 492



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 138/313 (44%), Gaps = 39/313 (12%)

Query: 111 SLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170
            ++K +  TG  PD    N  ++C  K G    G  +   I    F PDA +++ LI  L
Sbjct: 285 KIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGL 344

Query: 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFG 229
                  E   LF  ++  GC LD   YN +I+G C++G    A  L EEM   G+    
Sbjct: 345 VKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH---- 400

Query: 230 VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---F 286
               P  +TY ++IDGL K                  L++    F   +   + LN   +
Sbjct: 401 ---PPTVVTYGSVIDGLAK---------------IDRLDEAYMLFEEAKSNGIKLNVVVY 442

Query: 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346
             LIDG  K+ ++  A  + + L + GL PNV T+N L+  L    +++E        + 
Sbjct: 443 SSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEA------LIC 496

Query: 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI----- 401
           F+ +      P+  TY+ILIN  C++ + +  FV +  +      P+ +T+T++I     
Sbjct: 497 FQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAK 556

Query: 402 --KILEINSFFRQ 412
              ILE +  F +
Sbjct: 557 AGNILEASGLFSR 569



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 127/296 (42%), Gaps = 26/296 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   S++IL   L K    +    LF  +   G   D + YN +I+ FCK G+V+  + +
Sbjct: 332 PDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQL 391

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           L  +      P  VT+ S+I  L    R+ EA  LF + +  G +L+V  Y++LI+G  +
Sbjct: 392 LEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGK 451

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK-EAGSANFLGFSCMASFSA 266
            G    A  + EE+            P+  T++ ++D L K E  +   + F  M     
Sbjct: 452 VGRIDEAYLIMEELMQKG------LTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKC 505

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                            + +  LI+GLC++ K   A   +Q + + GL PN +TY  +I 
Sbjct: 506 PPNQ-------------ITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMIS 552

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIF 382
           GL   G + E         LF R  + G  PD  +YN +I       +    + +F
Sbjct: 553 GLAKAGNILEASG------LFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALF 602



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 147/343 (42%), Gaps = 41/343 (11%)

Query: 76  VFDYMLNMRPS--RPPVTSFNILFG----------CLAKTKHYDTVLSLFKRLNLTGLFP 123
            FD +  MR    RP  +++ IL G           L K    D  + LF++L      P
Sbjct: 29  AFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAVELFEQLEQNRKVP 88

Query: 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183
             Y YN +I  +   G+    + +L R       P  + +  ++  L  + R+ EA  +F
Sbjct: 89  CAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIF 148

Query: 184 TKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243
            +++      +V TYN LI+ LCR G    AL + ++M    G F     P+ +T + +I
Sbjct: 149 EEMKRDAVP-NVPTYNILIDMLCREGKLNAALEIRDDMERA-GLF-----PNVLTVNIMI 201

Query: 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKI 301
           D LCK    A  L  +C + F  ++            C    + F  LIDGL K  ++  
Sbjct: 202 DRLCK----AQKLEEAC-SIFEGMDDKV---------CTPNAVTFSSLIDGLGKCGRVDD 247

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           A  L++ +   G +P  + Y  LIR     G+ ++         ++K +  TG  PDL  
Sbjct: 248 AYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHK------IYKEMVHTGCSPDLTL 301

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
            N  ++C  K G    G  +F  I    F PDA +++ LI  L
Sbjct: 302 INTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGL 344



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 7/178 (3%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+A  + + M  ++   P V ++  +   LAK    D    LF+     G+  +   Y+ 
Sbjct: 386 NKAYQLLEEM-KVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSS 444

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+ F K+GR+   ++++  +++   TP+  T+  L+  L     I EA   F  ++   
Sbjct: 445 LIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK 504

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
           C  +  TY+ LINGLCR      A   ++EM     + G+  +P+ ITY+T+I GL K
Sbjct: 505 CPPNQITYSILINGLCRVRKFNKAFVFWQEMQ----KLGL--KPNTITYTTMISGLAK 556



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 1/150 (0%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA  + + ++  +   P V ++N L   L K +  +  L  F+ +      P++ TY+I
Sbjct: 456 DEAYLIMEELMQ-KGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSI 514

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LIN  C++ + +  FV    + +    P+ +T+T++I  L     I+EA+ LF++ +  G
Sbjct: 515 LINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANG 574

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEE 220
              D  +YN +I GL      + A  LFEE
Sbjct: 575 GIPDSASYNAMIEGLSSANKAMDAYALFEE 604


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 153/315 (48%), Gaps = 28/315 (8%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V +++ +   L+   + +  L+++ ++ + G  P+ YT+  L+  +   GRV     +
Sbjct: 282 PNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNI 341

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R+    F P+ V + +LI  LC+  ++ EA ++ +K+   GC  +V TY  LI+G  +
Sbjct: 342 WNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAK 401

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G  + A  ++ +M   NG     C P+ + Y+++++ LC+ +       FS   ++S +
Sbjct: 402 AGDLVGASEIWNKMMT-NG-----CIPNVVVYTSMVNVLCRSS------MFS--QAWSLI 447

Query: 268 NKMAFYFPLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
            KM+         C    + F   I GLC   +++ A  LF  + + G  PN+ TYN ++
Sbjct: 448 EKMS------TDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVL 501

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GL  + ++ E         L   +   G+  +L TYN +   FC +G+      + G++
Sbjct: 502 DGLLKENRIKEA------LELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKM 555

Query: 386 LPSCFTPDAVTFTSL 400
           L     PDA+T+ +L
Sbjct: 556 LVGGVKPDAITYNTL 570



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 143/327 (43%), Gaps = 31/327 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V  +N L   +     +  +  ++  +   G  P+ YTYNIL+   CK  RV     
Sbjct: 146 QPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACK 205

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +L  +      PD V++T++I  +    ++ EA  L  + +      +V  YN LING C
Sbjct: 206 LLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQP-----NVSVYNALINGFC 260

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF-LGFSCMASFS 265
           R         L  +M     E G+  +P+ ITYST+I  L   +G  N  L  +  A   
Sbjct: 261 REYKVKEVFLLLGQMV----EKGI--DPNVITYSTVISSL---SGIGNVELALAVWAKMF 311

Query: 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325
                   +           F  L+ G     ++  A  ++  +   G  PNVV YN LI
Sbjct: 312 VRGCSPNVY----------TFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLI 361

Query: 326 RGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385
            GLC+ G+M E     +      ++   G  P++ TY  LI+ F K G +     I+ ++
Sbjct: 362 HGLCSHGKMGEAVSVSS------KMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKM 415

Query: 386 LPSCFTPDAVTFTSLIKILEINSFFRQ 412
           + +   P+ V +TS++ +L  +S F Q
Sbjct: 416 MTNGCIPNVVVYTSMVNVLCRSSMFSQ 442



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 140/331 (42%), Gaps = 61/331 (18%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +++ M       P V ++N L   L         +S+  ++   G  P+  TY  L
Sbjct: 337 EALNIWNRMAE-EGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGAL 395

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+ F K G +     +  +++ +   P+ V +TS++  LC  S   +A +L  K+    C
Sbjct: 396 IDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNC 455

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             +  T+NT I GLC +G    A+NLF +M     ++G  C P+  TY+ ++DGL KE  
Sbjct: 456 PPNTVTFNTFIKGLCCSGRVECAINLFCQME----QYG--CSPNIKTYNEVLDGLLKE-- 507

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
                                                        +++K A EL   +  
Sbjct: 508 ---------------------------------------------NRIKEALELVTEMEE 522

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
            G+  N+VTYN +  G CN G+      +E    L  ++   G+ PD  TYN L   +C 
Sbjct: 523 KGMELNLVTYNTIFGGFCNVGK------FEEALKLLGKMLVGGVKPDAITYNTLTYAYCM 576

Query: 372 IGRVSSGFVIFGRILPSC-FTPDAVTFTSLI 401
            G+V +   +  ++     + P+   +TSL+
Sbjct: 577 QGKVKTAIQLLDKLSAGGKWVPEVAAYTSLL 607



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 142/329 (43%), Gaps = 31/329 (9%)

Query: 77  FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136
           F  + N +  +    ++ I+   L +    D V  L +++ L G+      +  +IN + 
Sbjct: 66  FRSIANSKAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYR 125

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196
           ++G       +  RI      P    +  L+  + +E+R      +++ ++  G E +V+
Sbjct: 126 RVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVY 185

Query: 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256
           TYN L+  LC+      A  L  EM+N        CEPD ++Y+T+I  + K        
Sbjct: 186 TYNILLKALCKNNRVDGACKLLVEMSNKG------CEPDVVSYTTVISSMSK-------- 231

Query: 257 GFSCMASFSALNKMAFYF-PLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
               +       +++  F P V V      +  LI+G C+  K+K    L   +   G+ 
Sbjct: 232 ----LGKVEEARELSIRFQPNVSV------YNALINGFCREYKVKEVFLLLGQMVEKGID 281

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           PNV+TY+ +I  L   G +      E    ++ ++   G  P++YT+  L+  +   GRV
Sbjct: 282 PNVITYSTVISSLSGIGNV------ELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRV 335

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
                I+ R+    F P+ V + +LI  L
Sbjct: 336 LEALNIWNRMAEEGFEPNVVAYNTLIHGL 364



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 108/243 (44%), Gaps = 17/243 (6%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P V  +  +   L ++  +    SL ++++     P+  T+N  I   C  GRV     +
Sbjct: 422 PNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINL 481

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++ +   +P+  T+  ++  L  E+RI EA  L T++   G EL++ TYNT+  G C 
Sbjct: 482 FCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCN 541

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G    AL L  +M  G    GV  +PDAITY+T+    C +           +   SA 
Sbjct: 542 VGKFEEALKLLGKMLVG----GV--KPDAITYNTLTYAYCMQGKVKT--AIQLLDKLSAG 593

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K   + P V        +  L+ G+C    ++ A      +   G+  N  T+N L+RG
Sbjct: 594 GK---WVPEVAA------YTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRG 644

Query: 328 LCN 330
           L N
Sbjct: 645 LFN 647



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + ++N +FG       ++  L L  ++ + G+ PD  TYN L   +C  G+V     +L 
Sbjct: 529 LVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLD 588

Query: 150 RILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208
           ++     + P+   +TSL+  +C +  + EA     K+   G  L+  T+N L+ GL  +
Sbjct: 589 KLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRGLFNS 648

Query: 209 -GH 210
            GH
Sbjct: 649 LGH 651


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 141/322 (43%), Gaps = 27/322 (8%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + ++N +   +        VL   K +   GL PD  +YNILI      G +   F 
Sbjct: 292 QPDMQTYNPILSWMCNEGRASEVLREMKEI---GLVPDSVSYNILIRGCSNNGDLEMAFA 348

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
               +++    P   T+ +LI  L  E++I  A  L  ++R  G  LD  TYN LING C
Sbjct: 349 YRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYC 408

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A  L +EM           +P   TY+++I  LC++  +           F  
Sbjct: 409 QHGDAKKAFALHDEMMTDG------IQPTQFTYTSLIYVLCRKNKTR-----EADELFEK 457

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +        LV +  L       +DG C I  +  A  L + +    + P+ VTYN L+R
Sbjct: 458 VVGKGMKPDLVMMNTL-------MDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMR 510

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC +G+ +E +       L   +   G+ PD  +YN LI+ + K G     F++   +L
Sbjct: 511 GLCGEGKFEEARE------LMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEML 564

Query: 387 PSCFTPDAVTFTSLIKILEINS 408
              F P  +T+ +L+K L  N 
Sbjct: 565 SLGFNPTLLTYNALLKGLSKNQ 586



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 136/328 (41%), Gaps = 34/328 (10%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           F++L  C  + +  D  +  F  +   G +P   T N ++    ++ R+ + +V    + 
Sbjct: 158 FDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMY 217

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
           R     +  TF  +I  LC E ++ +A      + VFG +  + TYNTL+ G    G   
Sbjct: 218 RMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIE 277

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
            A  +  EM +         +PD  TY+ I+  +C E  ++  L    M     +     
Sbjct: 278 GARLIISEMKSKG------FQPDMQTYNPILSWMCNEGRASEVL--REMKEIGLVPDSVS 329

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
           Y  L+R             G      L++A      + + G++P   TYN LI GL  + 
Sbjct: 330 YNILIR-------------GCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMEN 376

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           ++      E   +L + +   G+  D  TYNILIN +C+ G     F +   ++     P
Sbjct: 377 KI------EAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQP 430

Query: 393 DAVTFTSLIKIL-------EINSFFRQV 413
              T+TSLI +L       E +  F +V
Sbjct: 431 TQFTYTSLIYVLCRKNKTREADELFEKV 458



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 127/317 (40%), Gaps = 59/317 (18%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N L   L      +    L + +   G+  D  TYNILIN +C+ G     F +
Sbjct: 360 PTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFAL 419

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              ++     P   T+TSLI  LC +++  EA  LF K+   G + D+   NTL++G C 
Sbjct: 420 HDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCA 479

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+   A +L +EM        +   PD +TY+ ++ GLC E                  
Sbjct: 480 IGNMDRAFSLLKEMDM------MSINPDDVTYNCLMRGLCGEG----------------- 516

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
                                         K + AREL   + R G+ P+ ++YN LI G
Sbjct: 517 ------------------------------KFEEARELMGEMKRRGIKPDHISYNTLISG 546

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
               G   +TKH    F++   + S G  P L TYN L+    K         +   +  
Sbjct: 547 YSKKG---DTKH---AFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKS 600

Query: 388 SCFTPDAVTFTSLIKIL 404
               P+  +F S+I+ +
Sbjct: 601 EGIVPNDSSFCSVIEAM 617



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 148/335 (44%), Gaps = 36/335 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+  F Y++  +   P   + N +   L++    +     +  +    +  + YT+NI
Sbjct: 172 DEAIECF-YLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNI 230

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           +IN  CK G++      LG +      P  VT+ +L++      RI  A  + ++++  G
Sbjct: 231 MINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKG 290

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D+ TYN +++ +C  G    A  +  EM     E G+V  PD+++Y+ +I G C   
Sbjct: 291 FQPDMQTYNPILSWMCNEGR---ASEVLREMK----EIGLV--PDSVSYNILIRG-CSNN 340

Query: 251 GSANFLGFSCMASFSALNKMAF-YFPLVRVQCLCLNFL---CLIDGLCKISKLKIARELF 306
           G                 +MAF Y   +  Q +   F     LI GL   +K++ A  L 
Sbjct: 341 GDL---------------EMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILI 385

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
           + +   G++ + VTYNILI G C  G        +  F L   + + G+ P  +TY  LI
Sbjct: 386 REIREKGIVLDSVTYNILINGYCQHGDA------KKAFALHDEMMTDGIQPTQFTYTSLI 439

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
              C+  +      +F +++     PD V   +L+
Sbjct: 440 YVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLM 474



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 130/318 (40%), Gaps = 33/318 (10%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V +FNI+   L K             + + G+ P   TYN L+  F   GR+    +++ 
Sbjct: 225 VYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIIS 284

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +    F PD  T+  ++  +C E R   A+ +  +++  G   D  +YN LI G    G
Sbjct: 285 EMKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNG 341

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
              +A    +EM       G+V  P   TY+T+I GL  E               + +  
Sbjct: 342 DLEMAFAYRDEMVKQ----GMV--PTFYTYNTLIHGLFME---------------NKIEA 380

Query: 270 MAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
                  +R + + L+   +  LI+G C+    K A  L   +   G+ P   TY  LI 
Sbjct: 381 AEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIY 440

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC   +  E         LF+++   G+ PDL   N L++  C IG +   F +   + 
Sbjct: 441 VLCRKNKTREADE------LFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMD 494

Query: 387 PSCFTPDAVTFTSLIKIL 404
                PD VT+  L++ L
Sbjct: 495 MMSINPDDVTYNCLMRGL 512



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 6/160 (3%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P +   N L        + D   SL K +++  + PD  TYN L+   C  G+      
Sbjct: 464 KPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARE 523

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           ++G + R    PD +++ +LI     +     A  +  ++   G    + TYN L+ GL 
Sbjct: 524 LMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLS 583

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246
           +     +A  L  EM +     G+V  P+  ++ ++I+ +
Sbjct: 584 KNQEGELAEELLREMKSE----GIV--PNDSSFCSVIEAM 617



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 48/110 (43%)

Query: 81  LNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140
           ++M    P   ++N L   L     ++    L   +   G+ PD  +YN LI+ + K G 
Sbjct: 493 MDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGD 552

Query: 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
             H F+V   +L   F P  +T+ +L+K L        A  L  +++  G
Sbjct: 553 TKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEG 602


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 140/305 (45%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMH 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ EA  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M +          PD ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMEIYKQMLSQG------FSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  + V+Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL PD  TY I+++ FCK G V  G  +   +      
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHV 413

Query: 392 PDAVT 396
           P  +T
Sbjct: 414 PCVIT 418



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 118/248 (47%), Gaps = 18/248 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           RP V SFN L     K    D    L   ++ +G+ PD YTY++LIN  CK  ++     
Sbjct: 168 RPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHK 227

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +   +L     P+ VTFT+LI   C   ++  A  ++ ++   G   D  TYNTLI GLC
Sbjct: 228 LFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLC 287

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A +L +EM+          +PD ITY+T+IDG CKE             +F  
Sbjct: 288 KKGDLXQAKDLXDEMSMKG------LKPDKITYTTLIDGSCKEG--------DLETAFEY 333

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +M        ++   +++  LI GLCK  +   A ++ + +   GL P+  TY I++ 
Sbjct: 334 RKRMI----KENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMH 389

Query: 327 GLCNDGQM 334
             C +G +
Sbjct: 390 EFCKNGDV 397



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 137/300 (45%), Gaps = 26/300 (8%)

Query: 100 LAKTKHYDTVLSLFKRLNLTGLFPDR-YTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 158
           L K K++  V S +K + L   +P   Y +NIL++ FCK G +     V   I +    P
Sbjct: 111 LMKLKYFKLVWSFYKEI-LECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRP 169

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
             V+F +L+        + E   L + +   G + DV+TY+ LINGLC+      A  LF
Sbjct: 170 SVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLF 229

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
           +EM +     G+V  P+ +T++T+IDG CK  G  +      M  +  +    F    + 
Sbjct: 230 DEMLDR----GLV--PNGVTFTTLIDGHCKN-GKLDL----AMEIYKQMLSQGFSPDXI- 277

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
                  +  LI GLCK   L  A++L   +   GL P+ +TY  LI G C +G +    
Sbjct: 278 ------TYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDL---- 327

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
             ET F   KR+    +  D  +Y  LI+  CK GR      +   +L     PD  T+T
Sbjct: 328 --ETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYT 385



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 119/253 (47%), Gaps = 33/253 (13%)

Query: 154 SCFTPDAVTFTSLIKD-LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            C  P ++ F +++ D  C E  I  A ++F  +  +G    V ++NTL+NG  + G   
Sbjct: 129 ECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 213 VALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
               L   M A+G        +PD  TYS +I+GLCKE               S +++  
Sbjct: 189 EGFRLKSAMHASG-------VQPDVYTYSVLINGLCKE---------------SKMDEAH 226

Query: 272 FYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
             F  +  + L  N   F  LIDG CK  KL +A E+++ +   G  P+ +TYN LI GL
Sbjct: 227 KLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGL 286

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C  G + + K       L   ++  GL PD  TY  LI+  CK G + + F    R++  
Sbjct: 287 CKKGDLXQAKD------LXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKE 340

Query: 389 CFTPDAVTFTSLI 401
               D V++T+LI
Sbjct: 341 NIRLDDVSYTALI 353



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 1/149 (0%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+   S P   ++N L   L K         L   +++ GL PD+ TY  LI
Sbjct: 260 AMEIYKQMLSQGFS-PDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLI 318

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V++T+LI  LC E R ++A  +  ++   G +
Sbjct: 319 DGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLK 378

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEM 221
            D  TY  +++  C+ G   +   L +EM
Sbjct: 379 PDTGTYTIVMHEFCKNGDVKMGSKLLKEM 407


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 144/321 (44%), Gaps = 30/321 (9%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   ++  L   + K    +    LF ++   GL P+  TYN LI+ +C  G +   F 
Sbjct: 240 EPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFS 299

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
               +++    P   T+  L+  L  E R+ EA  +  ++R  G   D  TYN LING  
Sbjct: 300 YRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 359

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           R G+   A +L  EM +         EP  +TY+++I  L +                + 
Sbjct: 360 RCGNAKRAFDLHNEMLSKG------IEPTHVTYTSLIYVLSRR---------------NR 398

Query: 267 LNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
           + +    F  +  Q +  +   F  +IDG C    ++ A  L + + R  + P+ VT+N 
Sbjct: 399 MKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNT 458

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           L++G C +G+++E +      +L   +   G+ PD  +YN LI+ + + G +   F +  
Sbjct: 459 LMQGRCREGKVEEAR------MLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRD 512

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            +L   F P  +T+ +LIK L
Sbjct: 513 EMLSIGFNPTLLTYNALIKCL 533



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 152/315 (48%), Gaps = 24/315 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V S+N +    +   + +    +   + + G+ PD YTY  LI+  CK GR+     
Sbjct: 205 KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASG 264

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  +++     P+AVT+ +LI   C +  +  A +   ++   G    V TYN L++ L 
Sbjct: 265 LFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALF 324

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
             G    A ++ +EM     + G++  PDAITY+ +I+G  +  G+A         +F  
Sbjct: 325 MEGRMGEADDMIKEMR----KKGII--PDAITYNILINGYSR-CGNAK-------RAFDL 370

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            N+M        ++   + +  LI  L + +++K A +LF+ +   G+ P+V+ +N +I 
Sbjct: 371 HNEMLSK----GIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMID 426

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           G C +G +      E  F+L K ++   + PD  T+N L+   C+ G+V    ++   + 
Sbjct: 427 GHCANGNV------ERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMK 480

Query: 387 PSCFTPDAVTFTSLI 401
                PD +++ +LI
Sbjct: 481 XRGIKPDHISYNTLI 495



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 108/242 (44%), Gaps = 27/242 (11%)

Query: 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           +S++ DL  E ++ +A      +   G + +V +YNT+I+G    G+   A  + + M  
Sbjct: 178 SSIVFDLL-EGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRV 236

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCL 282
                    EPD+ TY ++I G+CKE       G F  M     +     Y         
Sbjct: 237 KG------IEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYN-------- 282

Query: 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342
                 LIDG C    L+ A      + + G+MP+V TYN+L+  L  +G+M E      
Sbjct: 283 -----TLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADD--- 334

Query: 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
              + K +   G+ PD  TYNILIN + + G     F +   +L     P  VT+TSLI 
Sbjct: 335 ---MIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIY 391

Query: 403 IL 404
           +L
Sbjct: 392 VL 393



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 41/195 (21%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
            P   ++  L   L++         LF+++   G+ PD   +N +I+  C  G V   F+
Sbjct: 380 EPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFM 439

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD------------ 194
           +L  + R    PD VTF +L++  C E ++ EA  L  +++  G + D            
Sbjct: 440 LLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYG 499

Query: 195 -----------------------VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231
                                  + TYN LI  LC+     +A  L +EM N        
Sbjct: 500 RRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKG------ 553

Query: 232 CEPDAITYSTIIDGL 246
             PD  TY ++I+G+
Sbjct: 554 ISPDDSTYLSLIEGM 568


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 144/337 (42%), Gaps = 38/337 (11%)

Query: 76   VFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN 133
            V+D  L M      P V ++N +   L ++   +     F  +   GL PD  TYN L+N
Sbjct: 1209 VYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLN 1268

Query: 134  CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193
             +CK G +    ++ G + R+   P  +T+  LI   C    + EA  L  ++   GC  
Sbjct: 1269 GYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLP 1328

Query: 194  DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253
            +V TY  L+ G        +A   F+EM +         +PD   Y+T I   C E    
Sbjct: 1329 NVCTYTILMKGSLNVRSLAMAREFFDEMLSKG------LQPDCFAYNTRI---CAEL--- 1376

Query: 254  NFLGFSCMASFSALNKMAFYFPLVRVQCL------CLNFLCLIDGLCKISKLKIARELFQ 307
                         L  +A  F L  V  L       + +  LI GLCK   LK A+EL  
Sbjct: 1377 ------------ILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQM 1424

Query: 308  SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
             +   GL P+ +TY  LI   C  G + E +       +F  + S GL P   T+ ++I+
Sbjct: 1425 KMVSNGLQPDCITYTCLIHAHCERGLLREARK------IFNNMISDGLLPSAVTFTVIIH 1478

Query: 368  CFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             +C+ G + S +  F ++L     P+ +T+  LI  L
Sbjct: 1479 AYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHAL 1515



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 144/355 (40%), Gaps = 69/355 (19%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P V ++N L     K  +    L LF  L   GL P   TYNILI+ +C++G +    ++
Sbjct: 1258 PDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARIL 1317

Query: 148  LGRILRSCFTPDAVTFTSLIKD--------------------------------LCAE-- 173
               +      P+  T+T L+K                                 +CAE  
Sbjct: 1318 KEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELI 1377

Query: 174  -SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232
               I  A  L   L + G   D  TYN LI+GLC+TG+   A  L  +M + NG      
Sbjct: 1378 LGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVS-NG-----L 1431

Query: 233  EPDAITYSTIID-----GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287
            +PD ITY+ +I      GL +EA       F+ M S   L                + F 
Sbjct: 1432 QPDCITYTCLIHAHCERGLLREARKI----FNNMISDGLLPS-------------AVTFT 1474

Query: 288  CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347
             +I   C+   L  A   F+ +   G+ PN +TYN+LI  LC  G+     H+      F
Sbjct: 1475 VIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHH------F 1528

Query: 348  KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
              +   GL  + YTY +LI+  CK+G        +  +  +   PD +T  +L+K
Sbjct: 1529 HEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLK 1583



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 111/246 (45%), Gaps = 25/246 (10%)

Query: 157  TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216
             PD      +++ L   +R  +  A+  ++   G E  + TYNTL++   + G       
Sbjct: 1081 APDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLKEGRKDKVAM 1140

Query: 217  LFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275
            L +EM   G+G     C P+ +TY+ +I GL ++    +    + +     L+K A  F 
Sbjct: 1141 LLKEMETRGSG-----CLPNDVTYNVVITGLTRKG---DLEEAAELVEGMRLSKKASSF- 1191

Query: 276  LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                      +  LI GL     +K   +L   +   G+MP VVTYN +I GL   G + 
Sbjct: 1192 ---------TYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLV- 1241

Query: 336  ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
                 E   + F  + + GL PD+ TYN L+N +CK G +    ++FG +  +   P  +
Sbjct: 1242 -----EAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVL 1296

Query: 396  TFTSLI 401
            T+  LI
Sbjct: 1297 TYNILI 1302



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 39/273 (14%)

Query: 77   FDYMLNMRPSRPPVTSFN------ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
            FD ML+ +  +P   ++N      ++ G +A+         L + L L G+  D  TYNI
Sbjct: 1353 FDEMLS-KGLQPDCFAYNTRICAELILGDIAR------AFELREVLMLEGISSDTVTYNI 1405

Query: 131  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
            LI+  CK G +     +  +++ +   PD +T+T LI   C    + EA  +F  +   G
Sbjct: 1406 LIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDG 1465

Query: 191  CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
                  T+  +I+  CR G+   A   F +M     E GV  EP+ ITY+ +I  LC+  
Sbjct: 1466 LLPSAVTFTVIIHAYCRRGNLYSAYGWFRKML----EEGV--EPNEITYNVLIHALCR-- 1517

Query: 251  GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQ 307
                 +G + +AS         +F  +  + L  N   +  LIDG CK+   + A   + 
Sbjct: 1518 -----MGRTQLASH--------HFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYF 1564

Query: 308  SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340
             + + G+ P+ +T+  L++G   DG +  T  Y
Sbjct: 1565 EMHQNGIHPDYLTHKALLKGF--DGHVHHTIEY 1595



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 88   PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
            P   +F ++     +  +  +    F+++   G+ P+  TYN+LI+  C+MGR       
Sbjct: 1468 PSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHH 1527

Query: 148  LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL-C 206
               +L      +  T+T LI   C      +A   + ++   G   D  T+  L+ G   
Sbjct: 1528 FHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLKGFDG 1587

Query: 207  RTGHTIVALN 216
               HTI  L+
Sbjct: 1588 HVHHTIEYLD 1597


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 141/305 (46%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + K+G +  GF +   + 
Sbjct: 139 FNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T + LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 199 ASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++ +M + +        PD ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMEIYRQMLSQS------LLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A E  + + +  +  +   Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           + +D  K       + + + S GL P++ TY ++IN FCK G V +G  +   +    + 
Sbjct: 361 RSVDAEK-------MLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYX 413

Query: 392 PDAVT 396
           P+ VT
Sbjct: 414 PNXVT 418



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 127/289 (43%), Gaps = 25/289 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD +      RP V SFN L     K    D    L   +  +G+ PD YT+++LI
Sbjct: 155 AQSVFDSITKW-GLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  ++     +   +L +   P+ VTFT+LI   C   R+  A  ++ ++      
Sbjct: 214 NGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLL 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G      +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKG------LKPDKITYTTLIDGNCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++     +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLETAFEYRKRMI----KENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
           GL P + TY ++I   C  G +       T   L K +   G  P+  T
Sbjct: 376 GLKPEIGTYTMIINEFCKKGDV------WTGSKLLKEMQRXGYXPNXVT 418



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 29/142 (20%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-------DETKHY- 340
           +I+ L K+   K+    ++     G   ++  +NIL+   C +G++       D    + 
Sbjct: 107 VIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWG 166

Query: 341 ---------------------ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
                                +  F L   + ++G+ PD+YT+++LIN  CK  ++    
Sbjct: 167 LRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDAN 226

Query: 380 VIFGRILPSCFTPDAVTFTSLI 401
            +F  +L +   P+ VTFT+LI
Sbjct: 227 ELFDEMLBNGLVPNGVTFTTLI 248


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/397 (27%), Positives = 172/397 (43%), Gaps = 43/397 (10%)

Query: 20  KPTSSISENEPSYPTTTA-TLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFD 78
           K  S ++E E  Y       +R T+    +    +  RCK   EG++       A+ V D
Sbjct: 183 KDKSMVNEVEEVYSVMIKCQIRPTI---VTFNTMMDSRCK---EGEV-----GRAVEVLD 231

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138
            M  M    P   S+N+L   L+    +D    L +++++ GL    +TYN LI  FCK 
Sbjct: 232 VM-RMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKK 290

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
                   +   +L     P  VT+ +++  LC   R+ +A      +       D+ +Y
Sbjct: 291 EMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSY 350

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258
           NTLI G  R G+   AL LF E+ + N        P  +TY+T+IDG C+   + N    
Sbjct: 351 NTLIYGYSRLGNFAEALLLFSELRSKN------LVPSVVTYNTLIDGGCR---TGNLDIA 401

Query: 259 SCMASFSALNKMAFYFPLVRVQCLC---LNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315
             M              +++   LC   + F  L+ G C++  L +A+ELF  +   GL 
Sbjct: 402 KGMKD-----------DMIK-HGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLK 449

Query: 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375
           P+ + Y   I G    G   +       F + + + + G  PDL TYN+LIN  CK+G  
Sbjct: 450 PDCIAYTTRIVGELKLGNPSKA------FGMKEEMKAEGFPPDLITYNVLINGLCKLGNF 503

Query: 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412
                +  ++      PD VT+TS+I    I+   R+
Sbjct: 504 DDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRK 540



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 152/338 (44%), Gaps = 35/338 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EAL +F   L  +   P V ++N L     +T + D    +   +   GL PD  T+ IL
Sbjct: 365 EALLLFSE-LRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTIL 423

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           +  FC+MG +     +   +L     PD + +T+ I          +A  +  +++  G 
Sbjct: 424 VRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGF 483

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID-----GL 246
             D+ TYN LINGLC+ G+   A  L ++M       G+V  PD +TY++II      GL
Sbjct: 484 PPDLITYNVLINGLCKLGNFDDANELVQKMRLE----GIV--PDHVTYTSIIHAHLISGL 537

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
            ++A             FS + K   +  +V        +  LI       +L  A++ F
Sbjct: 538 LRKAEEV----------FSDMLKKGIHPSVV-------TYTVLIHSYAVRGRLDFAKKYF 580

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
             +   G+ PNV+TYN LI GLC +  MD        + LF  + S G+ P+ YTY ILI
Sbjct: 581 DEMQDKGVSPNVITYNALIYGLCKENMMD------VAYNLFAEMESKGVSPNKYTYTILI 634

Query: 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           N    +        ++  +L     PD+ T ++L+K L
Sbjct: 635 NENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHL 672



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 147/332 (44%), Gaps = 27/332 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++A    D M+N     P + S+N L    ++  ++   L LF  L    L P   TYN 
Sbjct: 329 SDARRYLDVMVN-EDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNT 387

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  C+ G +     +   +++    PD VTFT L++  C    +  A  LF ++   G
Sbjct: 388 LIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRG 447

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEM-ANGNGEFGVVCEPDAITYSTIIDGLCKE 249
            + D   Y T I G  + G+   A  + EEM A G         PD ITY+ +I+GLCK 
Sbjct: 448 LKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEG-------FPPDLITYNVLINGLCK- 499

Query: 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL 309
                      + +F   N++     L  +    + +  +I        L+ A E+F  +
Sbjct: 500 -----------LGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDM 548

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369
            + G+ P+VVTY +LI      G++D  K Y      F  +   G+ P++ TYN LI   
Sbjct: 549 LKKGIHPSVVTYTVLIHSYAVRGRLDFAKKY------FDEMQDKGVSPNVITYNALIYGL 602

Query: 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           CK   +   + +F  +     +P+  T+T LI
Sbjct: 603 CKENMMDVAYNLFAEMESKGVSPNKYTYTILI 634


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 164/354 (46%), Gaps = 36/354 (10%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           + L +F  M+NM    P V  ++ L   L +       ++LF  +   G+  +  TYN L
Sbjct: 97  KGLKMFREMINMGIC-PNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSL 155

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+  C+ G          +++     PD VTFT+LI  L  + ++ EA  +F  +   G 
Sbjct: 156 IHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGE 215

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
             ++ TYN+L+NGLC       A+ LFE M     E G+  + D I+Y+T+I+G C    
Sbjct: 216 APNIVTYNSLLNGLCLHHQMDHAVRLFEVMV----ERGI--KIDVISYNTLINGYCTSGK 269

Query: 252 SANFLGF----------SCMASFSALNKMAFYFPLVRVQCLCLN-------------FLC 288
           +   +              + +++ L K  +    +R      N             +  
Sbjct: 270 TEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTV 329

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           L+DGLCK   ++ A ++F+SL      P++  Y+ILI      G M + + +E+   +F 
Sbjct: 330 LLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILI------GGMFQARRWESAMEIFD 383

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
            + + GL P++ TYNI+IN  CK G++     +F ++  S    D ++F  +I+
Sbjct: 384 EIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIR 437



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 138/316 (43%), Gaps = 35/316 (11%)

Query: 119 TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178
           +G  P+  T + L+   C  G+V     +  ++ RS F  D + +  LI  L    +   
Sbjct: 3   SGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARR 62

Query: 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238
           A  L  ++    C  + FTY  +I+ LC+ G  I  L +F EM N       +C P+ I 
Sbjct: 63  AVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMG-----IC-PNVIV 116

Query: 239 YSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFYFPLVRVQCL--------------- 282
           YS++I+GLC+       +  F  M S      +  Y  L+   C                
Sbjct: 117 YSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMV 176

Query: 283 -------CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD 335
                   + F  LID L K  K++ A ++F+ + + G  PN+VTYN L+ GLC   QMD
Sbjct: 177 GEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMD 236

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395
                     LF+ +   G+  D+ +YN LIN +C  G+      +F ++     TP   
Sbjct: 237 HAVR------LFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSIT 290

Query: 396 TFTSLIKILEINSFFR 411
           T+T L+K L  N   R
Sbjct: 291 TYTILLKALYQNGRIR 306



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 119/253 (47%), Gaps = 30/253 (11%)

Query: 152 LRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211
           ++S + P+ VT ++L+K +C E ++M+A  LF K+   G + D+  Y  LIN L +T   
Sbjct: 1   MKSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQA 60

Query: 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271
             A+ L   M         +C  +  TY  +ID LCK+      L    +  F  +  M 
Sbjct: 61  RRAVELHRRM------LSEICSGNFFTYGLVIDSLCKDG-----LAIKGLKMFREMINMG 109

Query: 272 FYFPLVRVQCLCLNFLC---LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328
                     +C N +    LI+GLC++ KL+ A  LF  +   G+  NV+TYN LI   
Sbjct: 110 ----------ICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHAS 159

Query: 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388
           C  G   E          F ++   G+ PD+ T+  LI+   K G+V   + IF  ++  
Sbjct: 160 CRFGLWKEATR------TFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQ 213

Query: 389 CFTPDAVTFTSLI 401
              P+ VT+ SL+
Sbjct: 214 GEAPNIVTYNSLL 226



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 152/381 (39%), Gaps = 67/381 (17%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ +FD M++ +  +  V ++N L     +   +      F ++   G+ PD  T+  L
Sbjct: 132 EAVNLFDEMVS-QGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTL 190

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           I+   K G+V   + +   +++    P+ VT+ SL+  LC   ++  A  LF  +   G 
Sbjct: 191 IDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGI 250

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMAN------------------GNGEFGVVCE 233
           ++DV +YNTLING C +G T  A+ LF +M                     NG      E
Sbjct: 251 KIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKE 310

Query: 234 -----------PDAITYSTIIDGLCKEAGSANFLG-FSCMASFSALNKMAFY-------- 273
                      P   TY+ ++DGLCK       +  F  + S      +  Y        
Sbjct: 311 LFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMF 370

Query: 274 --------------FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319
                          P V +    + +  +I+GLCK  KL  A  LF  +  +G   + +
Sbjct: 371 QARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEI 430

Query: 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379
           ++N +IRG   + Q+ +   +       KR+      P+     +L+N +    + S   
Sbjct: 431 SFNFIIRGFLQENQVQKAMEF------LKRMREKNFSPNDSVTLMLVNLYAADAQSSE-- 482

Query: 380 VIFGRILPSCFTPDAVTFTSL 400
                 LP+ F  + V   +L
Sbjct: 483 ------LPNNFLHELVQKKTL 497


>gi|242091782|ref|XP_002436381.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
 gi|241914604|gb|EER87748.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
          Length = 546

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 143/321 (44%), Gaps = 33/321 (10%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + S NIL   L      D  L +   +   G+ PD  TY  ++  +C  G +     +
Sbjct: 202 PNLVSCNILLKGLVGMGDLDAALKVLDEMTGWGIVPDVVTYTTVLTAYCAKGDLEGAQQL 261

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
              I+ S   PDA  +T L+   C   ++ +AA +  ++   G + +  TY+ +I   C+
Sbjct: 262 FDDIVASGRRPDATMYTVLVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTYSVVIEACCK 321

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE--AGSANFLGFSCMASFS 265
            G +I A +L  EM       G    PD    + ++D LC++  AG AN           
Sbjct: 322 EGKSIEACDLTREM------LGAGYVPDTPLCAKVVDVLCQDGKAGEAN----------- 364

Query: 266 ALNKMAFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323
                  +  +V+      N +   LI  LCK   ++ AR LF  L R G +P+++TYN 
Sbjct: 365 -----EIWRQMVKKSVPPDNTVVSTLIYWLCKNGMVQEARGLFDELER-GFVPSLLTYNS 418

Query: 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383
           LI GLC +G++ E         ++  +      P+  TY  LI  FCKIG+ + G+ +F 
Sbjct: 419 LIIGLCENGELQEAGR------VWDDMVERRYEPNAMTYEALIKGFCKIGKSNEGYALFK 472

Query: 384 RILPSCFTPDAVTFTSLIKIL 404
            ++    TP    + +L+  L
Sbjct: 473 EMVAKGCTPSKFLYQALVDSL 493



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 7/162 (4%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P   +++++     K         L + +   G  PD      +++  C+ G+      
Sbjct: 306 KPNEVTYSVVIEACCKEGKSIEACDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGEANE 365

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++++    PD    ++LI  LC    + EA  LF +L   G    + TYN+LI GLC
Sbjct: 366 IWRQMVKKSVPPDNTVVSTLIYWLCKNGMVQEARGLFDELE-RGFVPSLLTYNSLIIGLC 424

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248
             G    A  ++++M           EP+A+TY  +I G CK
Sbjct: 425 ENGELQEAGRVWDDMVERR------YEPNAMTYEALIKGFCK 460



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 2/147 (1%)

Query: 83  MRPSRPPV-TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141
           ++ S PP  T  + L   L K         LF  L   G  P   TYN LI   C+ G +
Sbjct: 371 VKKSVPPDNTVVSTLIYWLCKNGMVQEARGLFDELE-RGFVPSLLTYNSLIIGLCENGEL 429

Query: 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201
                V   ++   + P+A+T+ +LIK  C   +  E  ALF ++   GC    F Y  L
Sbjct: 430 QEAGRVWDDMVERRYEPNAMTYEALIKGFCKIGKSNEGYALFKEMVAKGCTPSKFLYQAL 489

Query: 202 INGLCRTGHTIVALNLFEEMANGNGEF 228
           ++ L    H      + E +A    +F
Sbjct: 490 VDSLSEPSHDDTVWTIVEAVALSGQDF 516


>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 146/326 (44%), Gaps = 43/326 (13%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N     L+K  H D  L   +         D+  Y+ +++ FC+ GR+     +
Sbjct: 371 PDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEI 430

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +      PD VT+TS+I  LC E ++ +A  +  ++   GC+ +  +Y  L+NGLC+
Sbjct: 431 VNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCK 490

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+++ A     EM N + E   +  P+AITYS ++ G  +E  S+     +C      +
Sbjct: 491 NGNSLEA----REMMNMSEEDWWI--PNAITYSVLMHGFRREGKSSE----ACDLVREMI 540

Query: 268 NKMAFYFPL---VRVQCLC------------------------LNFLCLIDGLCKISKLK 300
            K  F  P+   + +Q LC                        +NF  +I G C+   L+
Sbjct: 541 KKGFFPTPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLE 600

Query: 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360
            A  L   +  +   P+VVTY  +I  L   G+++E         L  ++   GL P   
Sbjct: 601 AALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATK------LAMKMLRVGLIPTPV 654

Query: 361 TYNILINCFCKIGRVSSGFVIFGRIL 386
           TY  +I+ +C++GRV     +  ++L
Sbjct: 655 TYRTVIHQYCRMGRVEDLLKLLEKML 680



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 144/318 (45%), Gaps = 25/318 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTV-LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           P   S+  + G L K K    V L + K L  + L PD+ TYN  ++   K G       
Sbjct: 335 PDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALE 394

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L       F  D V +++++   C E R+ +A  +  ++   GC  DV TY ++INGLC
Sbjct: 395 FLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLC 454

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      A  +  +M      +   C+P+ ++Y+ +++GLCK   + N L    M + S 
Sbjct: 455 QERKVDQAKKMLRQM------YKHGCKPNTVSYTALLNGLCK---NGNSLEAREMMNMSE 505

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
            +   ++ P        + +  L+ G  +  K   A +L + + + G  P  V  N+LI+
Sbjct: 506 ED---WWIPNA------ITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQ 556

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC + ++DE K +    L      + G   ++  +  +I+ FC+   + +   +   + 
Sbjct: 557 SLCQEEKVDEAKRFMEQCL------NNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMY 610

Query: 387 PSCFTPDAVTFTSLIKIL 404
            S   PD VT+T++I  L
Sbjct: 611 LSNKHPDVVTYTTIIDAL 628



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 136/318 (42%), Gaps = 25/318 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P ++  N     L      D  +   +R+ +  + P+  TYN LI  +C + R+     +
Sbjct: 265 PDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMEL 324

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK-LRVFGCELDVFTYNTLINGLC 206
           +  +     +PD +++ +++  LC E RI E   L  K L+      D  TYNT ++ L 
Sbjct: 325 IAEMPFKGCSPDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLS 384

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + GH   AL    E       F V    D + YS I+   C+E             +   
Sbjct: 385 KHGHGDEALEFLREAEERR--FRV----DKVGYSAIVHSFCREG--------RMDKAKEI 430

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +N+M     +  V    + +  +I+GLC+  K+  A+++ + + + G  PN V+Y  L+ 
Sbjct: 431 VNEMFSKGCIPDV----VTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLN 486

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC +G   E +       +          P+  TY++L++ F + G+ S    +   ++
Sbjct: 487 GLCKNGNSLEARE------MMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMI 540

Query: 387 PSCFTPDAVTFTSLIKIL 404
              F P  V    LI+ L
Sbjct: 541 KKGFFPTPVEINLLIQSL 558



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 127/303 (41%), Gaps = 38/303 (12%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+ + Y ++   + + G++ +   VL  + ++   PD     + I  L   +R+ +A   
Sbjct: 232 PEAFGYVMV--SYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRF 289

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             ++++   E +V TYN LI G C       A+ L  EM          C PD I+Y T+
Sbjct: 290 LERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKG------CSPDKISYYTV 343

Query: 243 IDGLCKEA-------------GSANFL-------GFSCMASFSALNKMAFYF----PLVR 278
           +  LCKE                +N L        F  M S       A  F       R
Sbjct: 344 MGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERR 403

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
            +   + +  ++   C+  ++  A+E+   +   G +P+VVTY  +I GLC + ++D+ K
Sbjct: 404 FRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAK 463

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  + +++   G  P+  +Y  L+N  CK G       +        + P+A+T++
Sbjct: 464 K------MLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYS 517

Query: 399 SLI 401
            L+
Sbjct: 518 VLM 520



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/110 (20%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           +  KL+ A  +   + +AG+ P++   N  I  L    ++D+   +       +R+    
Sbjct: 244 RAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRF------LERMQIVE 297

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + P++ TYN LI  +C + R+     +   +     +PD +++ +++  L
Sbjct: 298 IEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFL 347


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 162/365 (44%), Gaps = 49/365 (13%)

Query: 70  PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129
           P++AL VF  M  +    P + S+N L     + K +  V SLF      G+ P+  TYN
Sbjct: 94  PDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYN 153

Query: 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189
           +LI   CK          L  + +  F PD  +++++I DL    ++ +A  LF ++   
Sbjct: 154 VLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSER 213

Query: 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEE----------------MANGNGEFGVV-- 231
           G   DV  YN LI+G  +      A+ L++                 M +G  + G V  
Sbjct: 214 GVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDD 273

Query: 232 C------------EPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV 279
           C            E D  TYS++I GLC +AG+ +       + F+ L++      +V  
Sbjct: 274 CLKIWERMKQNEREKDLYTYSSLIHGLC-DAGNVD----KAESVFNELDERKASIDVV-- 326

Query: 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339
                 +  ++ G C+  K+K + EL++ +     + N+V+YNILI+GL  +G++DE   
Sbjct: 327 -----TYNTMLGGFCRCGKIKESLELWRIMEHKNSV-NIVSYNILIKGLLENGKIDEAT- 379

Query: 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399
                ++++ + + G   D  TY I I+  C  G V+    +   +  S    D   + S
Sbjct: 380 -----MIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYAS 434

Query: 400 LIKIL 404
           +I  L
Sbjct: 435 IIDCL 439



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 149/315 (47%), Gaps = 24/315 (7%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           + S+NIL   L +    D    +++ +   G   D+ TY I I+  C  G V+    V+ 
Sbjct: 359 IVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQ 418

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            +  S    D   + S+I  LC + R+ EA+ L  ++   G EL+    N LI GL R  
Sbjct: 419 EVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDS 478

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
               A     EM   NG     C P  ++Y+ +I GLCK AG      F   ++F     
Sbjct: 479 RLGEASFFLREMGK-NG-----CRPTVVSYNILICGLCK-AGK-----FGEASAFVKEML 526

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
              + P ++   +    LC   GLC+  K+ +A EL+    ++GL  +V+ +NILI GLC
Sbjct: 527 ENGWKPDLKTYSI---LLC---GLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLC 580

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389
           + G++D+     TV    +  N T    +L TYN L+  F K+G  +   VI+G +    
Sbjct: 581 SVGKLDDAM---TVMANMEHRNCTA---NLVTYNTLMEGFFKVGDSNRATVIWGYMYKMG 634

Query: 390 FTPDAVTFTSLIKIL 404
             PD +++ +++K L
Sbjct: 635 LQPDIISYNTIMKGL 649



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 147/366 (40%), Gaps = 58/366 (15%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++D +L      P V + NI+   L+K    D  L +++R+       D YTY+ LI
Sbjct: 238 AMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLI 297

Query: 133 NCFCKMGRVSHGFVV----------------------------------LGRILRSCFTP 158
           +  C  G V     V                                  L RI+    + 
Sbjct: 298 HGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSV 357

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           + V++  LIK L    +I EA  ++  +   G   D  TY   I+GLC  G+   AL + 
Sbjct: 358 NIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVM 417

Query: 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278
           +E+ +  G        D   Y++IID LCK+           +   S L K      +  
Sbjct: 418 QEVESSGGHL------DVYAYASIIDCLCKKKR---------LEEASNLVKEMSKHGVEL 462

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
              +C     LI GL + S+L  A    + + + G  P VV+YNILI GLC  G+  E  
Sbjct: 463 NSHVC---NALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEAS 519

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
            +       K +   G  PDL TY+IL+   C+  ++     ++ + L S    D +   
Sbjct: 520 AF------VKEMLENGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHN 573

Query: 399 SLIKIL 404
            LI  L
Sbjct: 574 ILIHGL 579



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 18/237 (7%)

Query: 94  NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153
           N L G L +           + +   G  P   +YNILI   CK G+       +  +L 
Sbjct: 468 NALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLE 527

Query: 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213
           + + PD  T++ L+  LC + +I  A  L+ +    G E DV  +N LI+GLC  G    
Sbjct: 528 NGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDD 587

Query: 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273
           A+ +   M + N      C  + +TY+T+++G  K  G +N         +  + KM   
Sbjct: 588 AMTVMANMEHRN------CTANLVTYNTLMEGFFK-VGDSN----RATVIWGYMYKMG-- 634

Query: 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330
                +Q   +++  ++ GLC    +  A E F      G+ P V T+NIL+R + N
Sbjct: 635 -----LQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRAVVN 686



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 124/277 (44%), Gaps = 24/277 (8%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V ++  +  CL K K  +   +L K ++  G+  + +  N LI    +  R+      L 
Sbjct: 429 VYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLR 488

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209
            + ++   P  V++  LI  LC   +  EA+A   ++   G + D+ TY+ L+ GLCR  
Sbjct: 489 EMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDR 548

Query: 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269
              +AL L+ +            E D + ++ +I GLC      +    + MA+    N 
Sbjct: 549 KIDLALELWHQFLQSG------LETDVMMHNILIHGLCSVGKLDD--AMTVMANMEHRNC 600

Query: 270 MAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329
            A            + +  L++G  K+     A  ++  + + GL P++++YN +++GLC
Sbjct: 601 TAN----------LVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLC 650

Query: 330 NDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366
               M     Y   F  F    + G+FP +YT+NIL+
Sbjct: 651 ----MCRGVSYAMEF--FDDARNHGIFPTVYTWNILV 681



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 66/137 (48%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P + +++IL   L + +  D  L L+ +   +GL  D   +NILI+  C +G++     
Sbjct: 531 KPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMT 590

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           V+  +     T + VT+ +L++          A  ++  +   G + D+ +YNT++ GLC
Sbjct: 591 VMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLC 650

Query: 207 RTGHTIVALNLFEEMAN 223
                  A+  F++  N
Sbjct: 651 MCRGVSYAMEFFDDARN 667



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 50/116 (43%)

Query: 90  VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLG 149
           V   NIL   L      D  +++   +       +  TYN L+  F K+G  +   V+ G
Sbjct: 569 VMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWG 628

Query: 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205
            + +    PD +++ +++K LC    +  A   F   R  G    V+T+N L+  +
Sbjct: 629 YMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRAV 684


>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 701

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 151/331 (45%), Gaps = 25/331 (7%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           EA+ +++ +L  +  RP  T++ +L   L K    +  L +FK         D Y Y+ +
Sbjct: 379 EAISIWE-LLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSM 437

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191
           ++  CK GR+     ++ ++ +  +  D      LI      S++ +A   F ++   GC
Sbjct: 438 VDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGC 497

Query: 192 ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251
              + +YNTLI GLC+      A +  +EM           +PD IT S ++DGLC+E  
Sbjct: 498 SPTIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEW------KPDMITCSLLMDGLCQEKK 551

Query: 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311
               L         AL+K   + P + +      +  L+ GLC + KL+ A +L+  + R
Sbjct: 552 IEMALNL----WQQALDK--GFKPDITM------YNILMHGLCSVCKLEDALQLYSHMKR 599

Query: 312 AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371
           +  +PN+VT N L+ GL       + + YE    ++  +   GL PD+ +YNI I   C 
Sbjct: 600 STCVPNLVTRNTLMEGLY------KVRDYEKASEIWDCILKDGLHPDIISYNITIKGLCS 653

Query: 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             R+S         L     P AVT+  L++
Sbjct: 654 CSRISDAIEFLNDALNRGILPTAVTWNILVR 684



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 161/336 (47%), Gaps = 36/336 (10%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E+L +++ M      +   T  +++ G L +  + D  + ++K +  + L  D  T+N 
Sbjct: 274 DESLEIWERMTKNEREKDMFTYSSLIHG-LCEAGNIDGAVRVYKEIVESSLVVDAVTHNA 332

Query: 131 LINCFCKMGRVSHGF---VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187
           ++N FC+ G++   F   +V+G+   +C T   V++  LIK L    ++ EA +++  L 
Sbjct: 333 MLNGFCRAGKIKESFELWMVMGK--ENCQT--VVSYNILIKGLFENGKVEEAISIWELLC 388

Query: 188 VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247
             GC  +  TY  LI+GLC+ G    AL +F+E  +G G+       DA  YS+++DGLC
Sbjct: 389 KKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKL------DAYAYSSMVDGLC 442

Query: 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC--LIDGLCKISKLKIAREL 305
           KE      +        + ++K  +              +C  LI+G  + SKL+ A   
Sbjct: 443 KEGRMDEAISI-----VNQMDKRGYKLD---------PHVCNPLINGFVRASKLEDAINF 488

Query: 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365
           F+ +   G  P +V+YN LI+GLC      + + +   +   K +      PD+ T ++L
Sbjct: 489 FREMECKGCSPTIVSYNTLIKGLC------KAERFSEAYSFVKEMLEKEWKPDMITCSLL 542

Query: 366 INCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           ++  C+  ++     ++ + L   F PD   +  L+
Sbjct: 543 MDGLCQEKKIEMALNLWQQALDKGFKPDITMYNILM 578



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 168/353 (47%), Gaps = 40/353 (11%)

Query: 72  EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL 131
           +A+ + D+M + +  +P V S+  L   + K       L +F  +++ G+  D   YN+L
Sbjct: 169 KAISLLDWMWS-QNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRGVVADVTCYNML 227

Query: 132 INCFCKMGRVSHGFVVLGRILRSCFT-PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           I+ F K G    G  +  R+++ C   P+ VT+  +I  LC   R  E+  ++ ++    
Sbjct: 228 IDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDESLEIWERMTKNE 287

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            E D+FTY++LI+GLC  G+   A+ +++E+     E  +V   DA+T++ +++G C+ A
Sbjct: 288 REKDMFTYSSLIHGLCEAGNIDGAVRVYKEIV----ESSLVV--DAVTHNAMLNGFCR-A 340

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLC---LNFLCLIDGLCKISKLKIARELFQ 307
           G                 K +F   +V  +  C   +++  LI GL +  K++ A  +++
Sbjct: 341 GKI---------------KESFELWMVMGKENCQTVVSYNILIKGLFENGKVEEAISIWE 385

Query: 308 SLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
            L + G  P   TY +LI GLC +G++++         +FK         D Y Y+ +++
Sbjct: 386 LLCKKGCRPESTTYGVLIHGLCKNGRLNKA------LKIFKEAEDGPGKLDAYAYSSMVD 439

Query: 368 CFCKIGRVSSGFVIFG-------RILPSCFTPDAVTFTSLIKILEINSFFRQV 413
             CK GR+     I         ++ P    P    F    K+ +  +FFR++
Sbjct: 440 GLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREM 492



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 154/369 (41%), Gaps = 65/369 (17%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           N+AL  F  M ++   +P V S+N L     +   +D   S  +      + P+  TYNI
Sbjct: 97  NKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESFSRYFESMDVSPNLQTYNI 156

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   CK  ++     +L  +      PD  ++ +LI  +     ++ A  +F ++ V G
Sbjct: 157 LIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKVGDLLGALKVFDEMSVRG 216

Query: 191 CELD------------------------------------VFTYNTLINGLCRTGHTIVA 214
              D                                    V TYN +INGLC+ G    +
Sbjct: 217 VVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLCKCGRFDES 276

Query: 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYF 274
           L ++E M           E D  TYS++I GLC EAG+ +               +  Y 
Sbjct: 277 LEIWERMTKNER------EKDMFTYSSLIHGLC-EAGNID-------------GAVRVYK 316

Query: 275 PLVRVQCL--CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
            +V    +   +    +++G C+  K+K + EL+  + +      VV+YNILI+GL  +G
Sbjct: 317 EIVESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQ-TVVSYNILIKGLFENG 375

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           +++E         +++ L   G  P+  TY +LI+  CK GR++    IF          
Sbjct: 376 KVEEA------ISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKL 429

Query: 393 DAVTFTSLI 401
           DA  ++S++
Sbjct: 430 DAYAYSSMV 438



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 112/260 (43%), Gaps = 19/260 (7%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +EA+ + + M + R  +      N L     +    +  ++ F+ +   G  P   +YN 
Sbjct: 448 DEAISIVNQM-DKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSPTIVSYNT 506

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI   CK  R S  +  +  +L   + PD +T + L+  LC E +I  A  L+ +    G
Sbjct: 507 LIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLWQQALDKG 566

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
            + D+  YN L++GLC       AL L+  M          C P+ +T +T+++GL K  
Sbjct: 567 FKPDITMYNILMHGLCSVCKLEDALQLYSHMKRS------TCVPNLVTRNTLMEGLYK-- 618

Query: 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310
                     +  +   +++        +    +++   I GLC  S++  A E      
Sbjct: 619 ----------VRDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDAL 668

Query: 311 RAGLMPNVVTYNILIRGLCN 330
             G++P  VT+NIL+R   N
Sbjct: 669 NRGILPTAVTWNILVRAAVN 688


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 136/304 (44%), Gaps = 24/304 (7%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + ++G +  GF +   + 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+TG   
Sbjct: 199 GSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSID 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+  ++EM            PD ITY+T+I GLCKE             S   L     
Sbjct: 259 LAMEAYKEMLRQG------FSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A +  + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREG 360

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           Q    +       + + + S GL PD  TY ++IN FCK G V  G  +   +      P
Sbjct: 361 QSVGAEK------MLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVP 414

Query: 393 DAVT 396
             VT
Sbjct: 415 CVVT 418



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 139/300 (46%), Gaps = 24/300 (8%)

Query: 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161
           K K++ +V   +K +   G     Y +NIL++ FCK G +     V   I +    P  V
Sbjct: 113 KLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVV 172

Query: 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221
           +F +L+        + E   L + +   G + DV+TY+ LINGLC+      A  LF+EM
Sbjct: 173 SFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEM 232

Query: 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
             GNG       P+ +T++T+IDG CK  GS +      M ++  + +  F   L+    
Sbjct: 233 I-GNG-----LVPNGVTFTTLIDGHCK-TGSIDL----AMEAYKEMLRQGFSPDLI---- 277

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
               +  LI GLCK   LK A++L   +   GL P+ +TY  LI G C +G +      E
Sbjct: 278 ---TYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDL------E 328

Query: 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401
           T F   KR+    +  D   Y  LI+  C+ G+      +   +L     PD  T+T +I
Sbjct: 329 TAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMII 388



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 19/262 (7%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD +      RP V SFN L     +    D    L   ++ +G+ PD YTY++LI
Sbjct: 155 AQSVFDEITKW-GLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  +++    +   ++ +   P+ VTFT+LI   C    I  A   + ++   G  
Sbjct: 214 NGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGSCKEG-- 325

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                     +F    +M        ++   + +  LI GLC+  +   A ++ + +   
Sbjct: 326 ------DLETAFKYKKRMI----KENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSV 375

Query: 313 GLMPNVVTYNILIRGLCNDGQM 334
           GL P+  TY ++I   C  G +
Sbjct: 376 GLKPDNGTYTMIINEFCKKGDV 397



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 63/134 (47%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P + ++N L   L K         L   +++ GL PD+ TY  LI+  CK G +   F  
Sbjct: 274 PDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKY 333

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             R+++     D V +T+LI  LC E + + A  +  ++   G + D  TY  +IN  C+
Sbjct: 334 KKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCK 393

Query: 208 TGHTIVALNLFEEM 221
            G   +   L +EM
Sbjct: 394 KGDVKMGSKLLKEM 407



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 98/244 (40%), Gaps = 45/244 (18%)

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVCEPDAITYSTI--IDGL 246
           + +Y T+I+ LC       A NL + + +  G+      F  + E      S +    GL
Sbjct: 13  LHSYCTMIHFLCTHQMLPEAKNLIQIVVSRKGKDSASAVFEAILEAKGAQRSDVYVFSGL 72

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
                 + FL    +  F    +  F+ P    + +  +F+       K+   K     +
Sbjct: 73  ITAYLESGFL-HDALECFRLTREHKFWVPFDTCRKVLEHFM-------KLKYFKSVWGFY 124

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQM-------DETKHY------------------- 340
           + +   G   ++  +NIL+   C +G+M       DE   +                   
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRL 184

Query: 341 ---ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
              +  F L   ++ +G+ PD+YTY++LIN  CK  +++    +F  ++ +   P+ VTF
Sbjct: 185 GDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTF 244

Query: 398 TSLI 401
           T+LI
Sbjct: 245 TTLI 248


>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           javanica]
          Length = 431

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 136/309 (44%), Gaps = 24/309 (7%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   +YN L+N + ++G +  GF +   + 
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLDEGFRLKSAMX 204

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  L  ES + +   LF ++   G   +  T+ TLI+G C+ G   
Sbjct: 205 ASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVD 264

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+ ++++M            PD ITY+T+  GLCK+       G     S   L    F
Sbjct: 265 LAMEIYKQM------LSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKF 318

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                        +  LIDG CK   L  A E  + + +  +  + V Y  LI GLC +G
Sbjct: 319 ------------TYTTLIDGCCKEGDLDAAFEHRKRMIQENIXLDDVAYTALISGLCQEG 366

Query: 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392
           +  + +       + + + S GL PD  TY ++IN FCK G V  G      +  +   P
Sbjct: 367 RSXDAEK------MLREMLSVGLKPDXGTYTMIINEFCKKGDVWKGXKXLKEMQRNGHVP 420

Query: 393 DAVTFTSLI 401
             VT+  L+
Sbjct: 421 XVVTYNVLM 429



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 128/295 (43%), Gaps = 25/295 (8%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD  +     RP V S+N L     +    D    L   +  +G+ PD YTY++LI
Sbjct: 161 AQSVFD-AITKWGLRPXVXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVYTYSVLI 219

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N   K   +     +   +L     P++VTFT+LI   C   R+  A  ++ ++      
Sbjct: 220 NGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLX 279

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D  TYNTL  GLC+ G    A  L +EM+          +PD  TY+T+IDG CKE   
Sbjct: 280 PDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKG------LKPDKFTYTTLIDGCCKEG-- 331

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312
                    A+F    +M        +    + +  LI GLC+  +   A ++ + +   
Sbjct: 332 ------DLDAAFEHRKRMI----QENIXLDDVAYTALISGLCQEGRSXDAEKMLREMLSV 381

Query: 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367
           GL P+  TY ++I   C  G + +           K +   G  P + TYN+L+N
Sbjct: 382 GLKPDXGTYTMIINEFCKKGDVWKGXK------XLKEMQRNGHVPXVVTYNVLMN 430



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 18/241 (7%)

Query: 87  RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           +P V ++++L   L K    D    LF  +   GL P+  T+  LI+  CK GRV     
Sbjct: 209 QPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAME 268

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
           +  ++L     PD +T+ +L   LC +  + +A  L  ++ + G + D FTY TLI+G C
Sbjct: 269 IYKQMLSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCC 328

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + G    A    + M   N         D + Y+ +I GLC+E  S +            
Sbjct: 329 KEGDLDAAFEHRKRMIQEN------IXLDDVAYTALISGLCQEGRSXD------------ 370

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             KM      V ++     +  +I+  CK   +    +  + + R G +P VVTYN+L+ 
Sbjct: 371 AEKMLREMLSVGLKPDXGTYTMIINEFCKKGDVWKGXKXLKEMQRNGHVPXVVTYNVLMN 430

Query: 327 G 327
           G
Sbjct: 431 G 431



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 36/167 (21%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A+ ++  ML+ +   P   ++N L   L K    +    L   +++ GL PD++TY  LI
Sbjct: 266 AMEIYKQMLS-QXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLI 324

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           +  CK G +   F    R+++     D V +T+LI  LC E R  +A  +  ++   G +
Sbjct: 325 DGCCKEGDLDAAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLK 384

Query: 193 LD-----------------------------------VFTYNTLING 204
            D                                   V TYN L+NG
Sbjct: 385 PDXGTYTMIINEFCKKGDVWKGXKXLKEMQRNGHVPXVVTYNVLMNG 431



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 6/120 (5%)

Query: 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348
           +++ L K+   K+    ++ +   G   ++  +NIL+   C DG +   +       +F 
Sbjct: 113 VLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQS------VFD 166

Query: 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408
            +   GL P + +YN L+N + ++G +  GF +   +  S   PD  T++ LI  L   S
Sbjct: 167 AITKWGLRPXVXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVYTYSVLINGLXKES 226


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 138/305 (45%), Gaps = 26/305 (8%)

Query: 93  FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152
           FNIL     K        S+F  +   GL P   ++N L+N + ++G +  GF +   + 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212
            S   PD  T++ LI  LC ES++ +A  LF ++   G   +  T+ TLI+G C+TG   
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSID 258

Query: 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAF 272
           +A+  ++EM            PD ITY+T+I GLCK+             S   L     
Sbjct: 259 LAMETYKEMLRQG------FSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK- 311

Query: 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332
                      + +  LIDG CK   L+ A    + + +  +  + V Y  LI GLC +G
Sbjct: 312 -----------ITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREG 360

Query: 333 Q-MDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391
           Q +D  K       + + + S GL PD  TY ++IN FCK G V +G  +   +      
Sbjct: 361 QSVDAEK-------MLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHV 413

Query: 392 PDAVT 396
           P  VT
Sbjct: 414 PCVVT 418



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 131/288 (45%), Gaps = 31/288 (10%)

Query: 73  ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132
           A  VFD +      RP V SFN L     +    D    L   ++ +G+ PD YTY++LI
Sbjct: 155 AQSVFDEITKW-GLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLI 213

Query: 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192
           N  CK  +++    + G ++ +   P+ VTFT+LI   C    I  A   + ++   G  
Sbjct: 214 NGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFS 273

Query: 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252
            D+ TYNTLI GLC+ G    A +L +EM+          +PD ITY+T+IDG CKE   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGSCKEGD- 326

Query: 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN---FLCLIDGLCKISKLKIARELFQSL 309
                         L    +Y   +  + + L+   +  LI GLC+  +   A ++ + +
Sbjct: 327 --------------LETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREM 372

Query: 310 PRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP 357
              GL P+  TY ++I   C  G +      +T   L K +   G  P
Sbjct: 373 LSVGLKPDNGTYTMIINEFCKKGDV------KTGSKLLKEMQRDGHVP 414



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 45/244 (18%)

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGE------FGVVCEPDAITYSTI--IDGL 246
           + +Y T+I+ LC       A NL + + +  G+      F  + E      S +    GL
Sbjct: 13  LHSYCTMIHFLCTHQMLPEAKNLIQIVVSRKGKDSASAVFEAILEAKGAQRSDVYVFSGL 72

Query: 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306
                 + FL    +  F    +  F+ P    + +  +F+       K+   K+    +
Sbjct: 73  ITAYLESGFL-HDALECFRLTREHKFWVPFDTCRKVLEHFM-------KLKYFKLVWGFY 124

Query: 307 QSLPRAGLMPNVVTYNILIRGLCNDGQM-------DETKHY------------------- 340
           + +   G   ++  +NIL+   C +G+M       DE   +                   
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRL 184

Query: 341 ---ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
              +  F L   ++++G+ PD+YTY++LIN  CK  +++    +FG ++ +   P+ VTF
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTF 244

Query: 398 TSLI 401
           T+LI
Sbjct: 245 TTLI 248


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 139/314 (44%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   S N     LAKT   D     F+ +   G+    +TYNI+I   CK G +     +
Sbjct: 215 PKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSL 274

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
             ++ +   TPD VT+ SLI        + E+  LF +++  GCE DV TYN LIN  C+
Sbjct: 275 FHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCK 334

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
                 A +   EM N         +P+ +TYST+ID LCKE      + F        L
Sbjct: 335 YEQMPKAFHFLHEMKNSG------LKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGL 388

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
           +   F             +  LID  CK   L  A +L   + +  +  NVVTY  L+ G
Sbjct: 389 SPNEF------------TYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDG 436

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
           LC +G+M E +       LF+ +   G+ P+L TY  L++   K  RV +   +   I  
Sbjct: 437 LCKEGRMMEAED------LFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKE 490

Query: 388 SCFTPDAVTFTSLI 401
               PD + + ++I
Sbjct: 491 KKIKPDLLLYGTII 504



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 158/375 (42%), Gaps = 44/375 (11%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
           EGD+ +     A  +F  M  M  + P + ++N L     K    D    LF+ +   G 
Sbjct: 265 EGDMVT-----AKSLFHQMKQMGLT-PDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGC 318

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TYN LINCFCK  ++   F  L  +  S   P+ VT+++LI  LC E  + +A  
Sbjct: 319 EPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIK 378

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
               +R  G   + FTY +LI+  C+ G+   AL L +EM      F VV      TY+T
Sbjct: 379 FLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVV------TYTT 432

Query: 242 IIDGLCKEAG--SANFLGFSCMASFSALNKMAFYFPLV-------RVQCL---------- 282
           ++DGLCKE     A  L F  M        +  Y  LV       RV+            
Sbjct: 433 LLDGLCKEGRMMEAEDL-FRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEK 491

Query: 283 -----CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337
                 L +  +I GLC  +KL+    +   +   G+  N V Y I +      G+  E 
Sbjct: 492 KIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEA 551

Query: 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397
            +      L + +   G+   + T+ +LI+  CK G V      F R+      P+ V  
Sbjct: 552 LN------LLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAV 605

Query: 398 -TSLIKILEINSFFR 411
            T+LI  L  N++  
Sbjct: 606 CTALIDGLCKNNYIE 620



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 145/361 (40%), Gaps = 49/361 (13%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           +E+ C+F+ M ++    P V ++N L  C  K +           +  +GL P+  TY+ 
Sbjct: 304 DESFCLFEEMKDV-GCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYST 362

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           LI+  CK   +      L  + R   +P+  T+TSLI   C    + +A  L  ++    
Sbjct: 363 LIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQ 422

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANG-------------NGEFG-------- 229
              +V TY TL++GLC+ G  + A +LF  M                +G           
Sbjct: 423 VGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENAL 482

Query: 230 --------VVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281
                      +PD + Y TII GLC    S N L   C    S +         +R   
Sbjct: 483 ELLKEIKEKKIKPDLLLYGTIIWGLC----SQNKLE-ECEFVMSEMKACG-----IRANS 532

Query: 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341
           +   +   +D   K  K   A  L Q +   G+   +VT+ +LI GLC  G ++E   Y 
Sbjct: 533 VI--YTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDY- 589

Query: 342 TVFLLFKRLNSTGLFPD-LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400
                F R+    L P+ +     LI+  CK   + +   +F  +      PD + +T+L
Sbjct: 590 -----FARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTAL 644

Query: 401 I 401
           I
Sbjct: 645 I 645



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 155/334 (46%), Gaps = 28/334 (8%)

Query: 71  NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130
           ++AL + D ML ++     VT   +L G L K         LF+ +   G+ P+  TY  
Sbjct: 409 SDALKLADEMLQVQVGFNVVTYTTLLDG-LCKEGRMMEAEDLFRAMIKAGVTPNLKTYTA 467

Query: 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190
           L++   K  RV +   +L  I      PD + + ++I  LC+++++ E   + ++++  G
Sbjct: 468 LVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACG 527

Query: 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250
              +   Y   ++   +TG T+ ALNL +EM +     GV  E   +T+  +IDGLCK+ 
Sbjct: 528 IRANSVIYTIRMDAYFKTGKTVEALNLLQEMCD----LGV--EVTIVTFCVLIDGLCKKG 581

Query: 251 GSANFLG-FSCMASFSAL-NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQS 308
                +  F+ MA F+   N +A          +C     LIDGLCK + ++ A++LF  
Sbjct: 582 LVEEAIDYFARMADFNLQPNNVA----------VCT---ALIDGLCKNNYIEAAKKLFDE 628

Query: 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368
           +    ++P+ + Y  LI     DG + + K ++    +  R++  G+  DL+ Y  L+  
Sbjct: 629 MQDKNMVPDKIAYTALI-----DGNL-KHKDFQEALNIRSRMSELGMELDLHAYTSLVWG 682

Query: 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIK 402
             +   V    +    ++     PD +    L++
Sbjct: 683 LSQGNLVQQARMFLNEMIGKGIVPDEILCIRLLR 716


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 149/343 (43%), Gaps = 26/343 (7%)

Query: 62  EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL 121
            G  TS T ++A+ V   + N     P + ++N +     +    D+   +  R+   G 
Sbjct: 100 HGLFTSKTIDKAIQVMHILENH--GHPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGF 157

Query: 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181
            PD  TYNILI   C  G +        ++L+    P  VT+T LI+    +  I EA  
Sbjct: 158 SPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMK 217

Query: 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241
           L  ++     + D+FTYN++I G+CR G+   A  +   +++          PD ITY+ 
Sbjct: 218 LLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKG------YAPDVITYNI 271

Query: 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301
           ++ GL  +       G+  M+   A             +   + +  LI  +C+  K++ 
Sbjct: 272 LLRGLLNQGKWE--AGYELMSDMVARG----------CEANVVTYSVLISSVCRDGKVEE 319

Query: 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361
              L + + + GL P+   Y+ LI  LC +G++D       V +      S G  PD+  
Sbjct: 320 GVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMI------SDGCVPDIVN 373

Query: 362 YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           YN ++ C CK  R      IF ++     +P+A ++ S+   L
Sbjct: 374 YNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSAL 416



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 160/366 (43%), Gaps = 44/366 (12%)

Query: 51  QFLKERCKSSG-------EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKT 103
           Q LKE CK +        E  +     +EA+ + D ML +   +P + ++N +   + + 
Sbjct: 186 QLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINL-QPDMFTYNSIIRGMCRE 244

Query: 104 KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTF 163
            + D    +   ++  G  PD  TYNIL+      G+   G+ ++  ++      + VT+
Sbjct: 245 GYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTY 304

Query: 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223
           + LI  +C + ++ E   L   ++  G + D + Y+ LI  LC+ G   +A+ + + M +
Sbjct: 305 SVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMIS 364

Query: 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-------SCMASFSALNKMAFYFPL 276
                   C PD + Y+TI+  LCK+  +   L          C  + S+ N M      
Sbjct: 365 DG------CVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSM------ 412

Query: 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDE 336
                    F  L     K+  L +  E+       G+ P+ +TYN LI  LC DG +DE
Sbjct: 413 ---------FSALWSTGHKVRALGMILEMLDK----GVDPDGITYNSLISCLCRDGMVDE 459

Query: 337 TKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396
                   L+   + S+   P + +YNI++   CK+ RVS    +   ++     P+  T
Sbjct: 460 AIE----LLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETT 515

Query: 397 FTSLIK 402
           +T LI+
Sbjct: 516 YTFLIE 521



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 138/298 (46%), Gaps = 25/298 (8%)

Query: 77  FDYMLNM--RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC 134
           ++ M +M  R     V ++++L   + +    +  + L K +   GL PD Y Y+ LI  
Sbjct: 286 YELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAA 345

Query: 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194
            CK GRV     VL  ++     PD V + +++  LC + R  EA ++F KL   GC  +
Sbjct: 346 LCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPN 405

Query: 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254
             +YN++ + L  TGH + AL +  EM +     GV  +PD ITY+++I  LC++     
Sbjct: 406 ASSYNSMFSALWSTGHKVRALGMILEMLDK----GV--DPDGITYNSLISCLCRDG---- 455

Query: 255 FLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314
                   +   L  M       +   +  N + L  GLCK+S++  A E+  ++   G 
Sbjct: 456 ----MVDEAIELLVDMEMESSECKPSVVSYNIVLL--GLCKVSRVSDAIEVLAAMVDKGC 509

Query: 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372
            PN  TY  LI G+   G +++ +   T  +    ++        +++  L   FCK+
Sbjct: 510 RPNETTYTFLIEGIGFGGCLNDARDLATTLVNMDAISE-------HSFERLYKTFCKL 560



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 137/349 (39%), Gaps = 38/349 (10%)

Query: 80  MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL-FPDRYTYNILINCFCKM 138
           + N  P+R    S +     L +T + +  LS   +     L F D +    L    CK 
Sbjct: 12  LFNPHPNRTNSHSNSRTLPILNETTNINRTLSSVSKPQTHTLDFKDTHLLKSLSRS-CKA 70

Query: 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198
           G  +     L  ++     PD V  T LI  L     I +A  +   L   G   D+  Y
Sbjct: 71  GNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHG-HPDLIAY 129

Query: 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC----------- 247
           N +I G CR      A  + + M N          PD +TY+ +I  LC           
Sbjct: 130 NAIITGFCRANRIDSAYQVLDRMKNKG------FSPDIVTYNILIGSLCSRGMLDSALEF 183

Query: 248 -----KEAGSANFLGFSCMASFSALN-------KMAFYFPLVRVQCLCLNFLCLIDGLCK 295
                KE      + ++ +   + L        K+      + +Q     +  +I G+C+
Sbjct: 184 KNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCR 243

Query: 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355
              +  A ++  S+   G  P+V+TYNIL+RGL N G+      +E  + L   + + G 
Sbjct: 244 EGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGK------WEAGYELMSDMVARGC 297

Query: 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
             ++ TY++LI+  C+ G+V  G  +   +      PD   +  LI  L
Sbjct: 298 EANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAAL 346


>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 139/314 (44%), Gaps = 24/314 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P   ++N     L+K  H D  L   +         D+  Y+ +++ FC+ GR+     +
Sbjct: 308 PDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEI 367

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207
           +  +      PD VT+TS+I  LC E ++ +A  +  ++   GC+ +  +Y  L+NGLC+
Sbjct: 368 VNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLNGLCK 427

Query: 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267
            G+++ A     EM N + E   +  P+AITYS ++ G  +E  S+     +C      +
Sbjct: 428 NGNSLEA----REMMNMSEEXWWI--PNAITYSVLMHGFRREGKSSE----ACDLVREMI 477

Query: 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327
            K  F  P        +    LI  LC+  K+  A+   +     G   NVV +  +I G
Sbjct: 478 KKGFFPTP--------VEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHG 529

Query: 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387
            C    +      E    L   +  +   PD+ TY  +I+   K GR+     +  ++L 
Sbjct: 530 FCQKDDL------EAALSLLDDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLR 583

Query: 388 SCFTPDAVTFTSLI 401
             + P  VT+ ++I
Sbjct: 584 VGWIPTPVTYRTVI 597



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 144/318 (45%), Gaps = 25/318 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTV-LSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146
           P   S+  + G L K K    + L + K L  + L PD+ TYN  ++   K G       
Sbjct: 272 PDKISYYTVMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALE 331

Query: 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206
            L       F  D V +++++   C E R+ +A  +  ++   GC  DV TY ++INGLC
Sbjct: 332 FLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLC 391

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           +      A  +  +M      +   C+P+ ++Y+ +++GLCK   + N L    M + S 
Sbjct: 392 QERKVDQAKKMLRQM------YKHGCKPNTVSYTALLNGLCK---NGNSLEAREMMNMS- 441

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
             +  ++ P        + +  L+ G  +  K   A +L + + + G  P  V  N+LI+
Sbjct: 442 --EEXWWIPNA------ITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQ 493

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
            LC + ++DE K +    L      + G   ++  +  +I+ FC+   + +   +   + 
Sbjct: 494 SLCQEEKVDEAKRFMEQCL------NNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMY 547

Query: 387 PSCFTPDAVTFTSLIKIL 404
            S   PD VT+T++I  L
Sbjct: 548 LSNKHPDVVTYTTIIDAL 565



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 136/318 (42%), Gaps = 25/318 (7%)

Query: 88  PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147
           P ++  N     L      D  +   +R+ +  + P+  TYN LI  +C + R+     +
Sbjct: 202 PDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIXPNVITYNCLIKGYCDLHRLEDAXEL 261

Query: 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK-LRVFGCELDVFTYNTLINGLC 206
           +  +     +PD +++ +++  LC E RI E   L  K L+      D  TYNT ++ L 
Sbjct: 262 IAEMPFKGCSPDKISYYTVMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLS 321

Query: 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266
           + GH   AL    E       F V    D + YS I+   C+E             +   
Sbjct: 322 KHGHGDEALEFLREAEERR--FRV----DKVGYSAIVHSFCREGRMDK--------AKEI 367

Query: 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326
           +N+M     +  V    + +  +I+GLC+  K+  A+++ + + + G  PN V+Y  L+ 
Sbjct: 368 VNEMFSKGCIPDV----VTYTSVINGLCQERKVDQAKKMLRQMYKHGCKPNTVSYTALLN 423

Query: 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386
           GLC +G   E +       +          P+  TY++L++ F + G+ S    +   ++
Sbjct: 424 GLCKNGNSLEARE------MMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLVREMI 477

Query: 387 PSCFTPDAVTFTSLIKIL 404
              F P  V    LI+ L
Sbjct: 478 KKGFFPTPVEINLLIQSL 495



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 124/303 (40%), Gaps = 38/303 (12%)

Query: 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182
           P+ + Y ++   + + G++ +    L  + ++   PD     + I  L   +R+ +A   
Sbjct: 169 PEAFGYVMV--SYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRF 226

Query: 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242
             ++++     +V TYN LI G C       A  L  EM          C PD I+Y T+
Sbjct: 227 LERMQIVEIXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKG------CSPDKISYYTV 280

Query: 243 IDGLCKEA-------------GSANFL-------GFSCMASFSALNKMAFYF----PLVR 278
           +  LCKE                +N L        F  M S       A  F       R
Sbjct: 281 MGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERR 340

Query: 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK 338
            +   + +  ++   C+  ++  A+E+   +   G +P+VVTY  +I GLC + ++D+ K
Sbjct: 341 FRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAK 400

Query: 339 HYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398
                  + +++   G  P+  +Y  L+N  CK G       +        + P+A+T++
Sbjct: 401 K------MLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYS 454

Query: 399 SLI 401
            L+
Sbjct: 455 VLM 457



 Score = 38.9 bits (89), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354
           +  KL+ A      + +AG+ P++   N  I  L    ++D+   +       +R+    
Sbjct: 181 RAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLDKAVRF------LERMQIVE 234

Query: 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404
           + P++ TYN LI  +C + R+     +   +     +PD +++ +++  L
Sbjct: 235 IXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFL 284


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.328    0.142    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,055,642,960
Number of Sequences: 23463169
Number of extensions: 236376737
Number of successful extensions: 779268
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4930
Number of HSP's successfully gapped in prelim test: 4526
Number of HSP's that attempted gapping in prelim test: 599197
Number of HSP's gapped (non-prelim): 65025
length of query: 414
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 269
effective length of database: 8,957,035,862
effective search space: 2409442646878
effective search space used: 2409442646878
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 78 (34.7 bits)