BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043191
         (414 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 37.0 bits (84), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 11/123 (8%)

Query: 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGR----------VSHGFVVLGRILRSCFTP 158
            L L+      G+   +Y YN+L+   C +            +S GF +  +++     P
Sbjct: 45  ALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103

Query: 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218
           +  TFT+  +   A+     A  +  +++ FG +  + +Y   + G CR G    A  + 
Sbjct: 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163

Query: 219 EEM 221
             M
Sbjct: 164 AHM 166


>pdb|1PBW|A Chain A, Structure Of Bcr-Homology (Bh) Domain
 pdb|1PBW|B Chain B, Structure Of Bcr-Homology (Bh) Domain
          Length = 216

 Score = 32.0 bits (71), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 336 ETKHYETVFLLFKRLNSTGLFPDLY--TYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393
           E +  E    L K+L  +   P  Y  T   L+  F K+ + SS  ++  R+L   F+P 
Sbjct: 109 EVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPM 168

Query: 394 AVTFTS--------LIKILEI 406
              F++        LIK++EI
Sbjct: 169 LFRFSAASSDNTENLIKVIEI 189



 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 79  YMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY--TYNILINCFC 136
           Y+L++     P   ++ +     + +  +  + L K+L  +   P +Y  T   L+  F 
Sbjct: 86  YLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFF 145

Query: 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169
           K+ + S   ++  R+L   F+P    F++   D
Sbjct: 146 KLSQTSSKNLLNARVLSEIFSPMLFRFSAASSD 178


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.142    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,450,884
Number of Sequences: 62578
Number of extensions: 441591
Number of successful extensions: 1055
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1047
Number of HSP's gapped (non-prelim): 9
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)