Query 043191
Match_columns 414
No_of_seqs 562 out of 2078
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 13:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 9.8E-55 2.1E-59 424.4 36.8 322 64-413 447-773 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8.3E-54 1.8E-58 417.9 37.8 322 65-413 381-738 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 8.9E-50 1.9E-54 386.6 32.0 325 63-413 167-513 (697)
4 PLN03081 pentatricopeptide (PP 100.0 6.1E-50 1.3E-54 387.8 30.4 337 61-413 94-481 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.9E-48 4.1E-53 386.0 30.8 337 60-414 228-645 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 3.1E-48 6.6E-53 384.5 30.4 337 58-413 257-676 (857)
7 PRK11788 tetratricopeptide rep 99.9 2.8E-21 6E-26 176.3 30.4 296 65-395 46-354 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 2.9E-20 6.3E-25 188.1 35.6 328 65-414 544-891 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2.5E-19 5.5E-24 181.3 35.6 327 65-413 442-789 (899)
10 PRK11788 tetratricopeptide rep 99.9 3.5E-19 7.5E-24 162.5 30.9 284 96-412 41-336 (389)
11 PRK15174 Vi polysaccharide exp 99.8 1.2E-16 2.6E-21 153.3 33.8 311 65-413 53-371 (656)
12 PRK15174 Vi polysaccharide exp 99.8 1.6E-15 3.5E-20 145.5 35.7 287 65-388 87-381 (656)
13 TIGR00990 3a0801s09 mitochondr 99.8 5.8E-15 1.3E-19 142.0 36.3 332 61-413 134-561 (615)
14 PRK11447 cellulose synthase su 99.7 1.9E-14 4.1E-19 147.5 36.2 327 65-413 280-730 (1157)
15 KOG4422 Uncharacterized conser 99.7 2.4E-14 5.3E-19 121.7 29.1 297 87-389 204-552 (625)
16 PRK14574 hmsH outer membrane p 99.7 5.6E-13 1.2E-17 128.9 33.7 328 66-413 46-469 (822)
17 TIGR00990 3a0801s09 mitochondr 99.7 7.3E-13 1.6E-17 127.6 33.5 290 92-413 129-486 (615)
18 PRK11447 cellulose synthase su 99.6 5.3E-13 1.2E-17 137.0 32.9 305 65-387 362-739 (1157)
19 KOG4626 O-linked N-acetylgluco 99.6 6.7E-14 1.4E-18 124.4 22.5 138 263-411 298-439 (966)
20 PRK10049 pgaA outer membrane p 99.6 3E-12 6.5E-17 125.8 36.0 334 66-413 27-412 (765)
21 PRK10049 pgaA outer membrane p 99.6 4.2E-12 9.1E-17 124.8 34.9 315 65-414 60-447 (765)
22 KOG4626 O-linked N-acetylgluco 99.6 2.2E-13 4.8E-18 121.1 23.1 307 63-410 159-506 (966)
23 KOG4422 Uncharacterized conser 99.6 1.5E-12 3.3E-17 110.9 27.2 316 65-407 126-481 (625)
24 PRK10747 putative protoheme IX 99.6 4.7E-12 1E-16 114.8 31.2 282 67-386 97-388 (398)
25 TIGR00540 hemY_coli hemY prote 99.6 6.6E-12 1.4E-16 114.5 31.2 290 65-385 95-396 (409)
26 PF13429 TPR_15: Tetratricopep 99.6 5.7E-15 1.2E-19 128.0 10.4 90 289-386 186-275 (280)
27 PF13429 TPR_15: Tetratricopep 99.6 2.2E-14 4.7E-19 124.3 13.1 254 63-351 17-275 (280)
28 PRK10747 putative protoheme IX 99.6 8.9E-12 1.9E-16 113.1 29.2 272 103-413 97-380 (398)
29 PRK09782 bacteriophage N4 rece 99.6 2.1E-11 4.6E-16 120.5 32.3 288 65-388 387-706 (987)
30 KOG1126 DNA-binding cell divis 99.6 2.3E-12 4.9E-17 115.9 23.0 280 68-389 333-621 (638)
31 COG2956 Predicted N-acetylgluc 99.5 3.3E-11 7.2E-16 99.3 27.4 289 65-388 46-347 (389)
32 PRK09782 bacteriophage N4 rece 99.5 3.9E-11 8.5E-16 118.7 33.2 296 73-410 460-760 (987)
33 KOG2076 RNA polymerase III tra 99.5 4.4E-11 9.6E-16 111.2 30.7 332 67-412 152-544 (895)
34 TIGR00540 hemY_coli hemY prote 99.5 5E-11 1.1E-15 108.8 29.9 288 94-413 86-389 (409)
35 COG3071 HemY Uncharacterized e 99.5 1.3E-10 2.8E-15 98.7 29.0 275 67-413 97-380 (400)
36 KOG4318 Bicoid mRNA stability 99.5 1.3E-12 2.8E-17 120.7 16.8 87 315-410 201-287 (1088)
37 PF13041 PPR_2: PPR repeat fam 99.5 1.3E-13 2.9E-18 84.5 6.1 50 357-406 1-50 (50)
38 PRK14574 hmsH outer membrane p 99.5 7.4E-10 1.6E-14 107.6 33.2 142 263-413 339-503 (822)
39 PF13041 PPR_2: PPR repeat fam 99.4 3.3E-13 7.2E-18 82.7 6.6 50 158-207 1-50 (50)
40 KOG4318 Bicoid mRNA stability 99.4 3.1E-11 6.8E-16 111.8 18.2 253 76-374 12-286 (1088)
41 COG2956 Predicted N-acetylgluc 99.4 3.6E-10 7.8E-15 93.3 21.5 275 103-406 48-327 (389)
42 PRK12370 invasion protein regu 99.4 8.2E-10 1.8E-14 104.7 26.1 246 105-389 276-536 (553)
43 TIGR02521 type_IV_pilW type IV 99.3 1.2E-09 2.7E-14 91.9 24.7 200 126-387 32-231 (234)
44 KOG1155 Anaphase-promoting com 99.3 4.2E-09 9.2E-14 91.2 27.2 303 69-408 242-554 (559)
45 KOG2003 TPR repeat-containing 99.3 2.8E-09 6E-14 92.1 24.2 143 263-409 536-709 (840)
46 KOG1126 DNA-binding cell divis 99.3 5.2E-10 1.1E-14 101.0 20.4 250 65-355 364-622 (638)
47 TIGR02521 type_IV_pilW type IV 99.3 3E-09 6.4E-14 89.6 24.3 201 88-352 29-231 (234)
48 KOG1155 Anaphase-promoting com 99.3 5E-09 1.1E-13 90.8 22.9 188 196-413 331-526 (559)
49 KOG2076 RNA polymerase III tra 99.3 4.3E-08 9.3E-13 91.8 30.5 284 98-413 147-502 (895)
50 KOG2002 TPR-containing nuclear 99.3 6.1E-09 1.3E-13 98.0 25.0 331 63-413 316-735 (1018)
51 PRK12370 invasion protein regu 99.2 1.8E-08 4E-13 95.6 27.5 231 123-388 254-502 (553)
52 KOG0547 Translocase of outer m 99.2 9E-08 2E-12 83.8 28.8 335 58-413 119-556 (606)
53 COG3071 HemY Uncharacterized e 99.2 4.9E-08 1.1E-12 83.3 26.2 251 66-386 130-388 (400)
54 PF12569 NARP1: NMDA receptor- 99.2 3.4E-08 7.4E-13 91.0 26.6 292 66-413 16-324 (517)
55 KOG2002 TPR-containing nuclear 99.2 1.9E-08 4.2E-13 94.8 24.3 212 174-401 544-758 (1018)
56 KOG0495 HAT repeat protein [RN 99.2 3.7E-07 8.1E-12 82.8 31.2 306 66-409 528-866 (913)
57 KOG1840 Kinesin light chain [C 99.1 2.3E-08 5E-13 91.0 22.0 241 125-386 199-477 (508)
58 KOG1915 Cell cycle control pro 99.1 3.3E-07 7.1E-12 80.1 27.5 118 264-388 417-536 (677)
59 KOG1129 TPR repeat-containing 99.1 8.8E-09 1.9E-13 85.4 16.9 227 128-387 226-457 (478)
60 KOG1129 TPR repeat-containing 99.1 9.5E-09 2.1E-13 85.2 17.0 226 156-413 219-448 (478)
61 PRK11189 lipoprotein NlpI; Pro 99.1 2E-07 4.4E-12 81.1 25.3 231 68-322 40-274 (296)
62 KOG2003 TPR repeat-containing 99.1 6.5E-08 1.4E-12 83.9 20.8 237 69-333 471-709 (840)
63 PRK11189 lipoprotein NlpI; Pro 99.1 1.2E-07 2.6E-12 82.5 23.1 227 104-399 40-275 (296)
64 KOG0495 HAT repeat protein [RN 99.1 2.5E-06 5.3E-11 77.7 31.2 328 66-413 418-772 (913)
65 KOG1840 Kinesin light chain [C 99.0 6.7E-08 1.4E-12 88.1 21.3 241 160-414 199-470 (508)
66 KOG1173 Anaphase-promoting com 99.0 8.7E-07 1.9E-11 79.2 25.4 286 88-407 242-535 (611)
67 cd05804 StaR_like StaR_like; a 99.0 4.4E-06 9.6E-11 75.3 29.9 288 68-413 20-326 (355)
68 COG3063 PilF Tfp pilus assembl 99.0 1.4E-06 3E-11 69.2 22.5 196 130-387 40-235 (250)
69 PF12854 PPR_1: PPR repeat 98.9 1.6E-09 3.5E-14 59.5 4.3 34 353-386 1-34 (34)
70 PF04733 Coatomer_E: Coatomer 98.9 8.3E-08 1.8E-12 82.4 16.7 251 66-388 13-265 (290)
71 PF12854 PPR_1: PPR repeat 98.9 2.3E-09 4.9E-14 58.9 4.0 32 190-221 2-33 (34)
72 KOG0547 Translocase of outer m 98.9 4.5E-07 9.8E-12 79.5 19.7 224 66-352 338-565 (606)
73 COG3063 PilF Tfp pilus assembl 98.9 5.1E-07 1.1E-11 71.6 17.8 177 63-251 44-222 (250)
74 cd05804 StaR_like StaR_like; a 98.9 5.1E-06 1.1E-10 74.9 27.3 153 65-223 54-214 (355)
75 KOG1174 Anaphase-promoting com 98.8 2.2E-05 4.8E-10 67.8 27.3 79 300-388 421-500 (564)
76 PF12569 NARP1: NMDA receptor- 98.8 3.6E-06 7.8E-11 77.8 24.5 249 97-414 11-282 (517)
77 KOG1173 Anaphase-promoting com 98.8 8.3E-06 1.8E-10 73.1 24.9 265 65-370 255-533 (611)
78 KOG1156 N-terminal acetyltrans 98.8 4.9E-05 1.1E-09 69.5 29.4 329 64-413 51-458 (700)
79 KOG1156 N-terminal acetyltrans 98.8 3.4E-05 7.4E-10 70.4 28.3 170 67-246 20-189 (700)
80 KOG2376 Signal recognition par 98.7 0.00018 3.9E-09 65.3 31.4 328 66-407 24-505 (652)
81 KOG3785 Uncharacterized conser 98.7 2.6E-05 5.7E-10 66.1 23.8 153 68-224 36-214 (557)
82 PF04733 Coatomer_E: Coatomer 98.7 2.7E-06 5.8E-11 73.2 17.1 116 285-411 133-252 (290)
83 PRK15179 Vi polysaccharide bio 98.7 7.3E-06 1.6E-10 78.8 21.6 134 88-225 84-218 (694)
84 KOG1915 Cell cycle control pro 98.6 0.0003 6.5E-09 62.2 28.5 299 68-387 155-584 (677)
85 KOG2047 mRNA splicing factor [ 98.6 7.2E-05 1.6E-09 68.4 25.5 315 57-389 105-507 (835)
86 PLN02789 farnesyltranstransfer 98.6 0.00012 2.5E-09 64.1 26.4 153 66-223 49-211 (320)
87 KOG1125 TPR repeat-containing 98.6 7.6E-06 1.6E-10 73.6 18.5 249 65-381 296-564 (579)
88 TIGR03302 OM_YfiO outer membra 98.6 4.9E-06 1.1E-10 70.2 16.1 157 65-224 44-232 (235)
89 KOG1174 Anaphase-promoting com 98.6 7.8E-05 1.7E-09 64.6 22.8 254 124-413 231-490 (564)
90 COG5010 TadD Flp pilus assembl 98.6 7.2E-06 1.6E-10 66.6 15.9 155 64-223 76-230 (257)
91 PRK10370 formate-dependent nit 98.5 1.1E-05 2.5E-10 65.4 16.1 128 66-198 51-181 (198)
92 PLN02789 farnesyltranstransfer 98.5 0.00033 7.2E-09 61.2 26.0 134 101-245 48-185 (320)
93 KOG1070 rRNA processing protei 98.5 0.0001 2.2E-09 73.1 23.8 81 294-381 1611-1693(1710)
94 KOG1128 Uncharacterized conser 98.5 1.7E-05 3.6E-10 73.4 17.4 204 95-339 403-608 (777)
95 PRK15359 type III secretion sy 98.5 1.7E-05 3.6E-10 60.9 15.0 91 96-188 30-120 (144)
96 KOG1070 rRNA processing protei 98.5 0.00025 5.3E-09 70.6 25.8 227 88-337 1456-1690(1710)
97 KOG4340 Uncharacterized conser 98.4 3.4E-05 7.4E-10 63.9 16.9 278 65-384 21-335 (459)
98 KOG4162 Predicted calmodulin-b 98.4 0.00054 1.2E-08 64.2 26.4 337 64-414 333-774 (799)
99 KOG0985 Vesicle coat protein c 98.4 0.00024 5.2E-09 68.4 24.1 202 126-386 1105-1306(1666)
100 KOG0548 Molecular co-chaperone 98.4 0.00073 1.6E-08 60.7 25.7 104 62-170 10-114 (539)
101 KOG1128 Uncharacterized conser 98.4 8.5E-06 1.8E-10 75.3 14.1 224 65-331 409-636 (777)
102 PRK10370 formate-dependent nit 98.4 2.6E-05 5.6E-10 63.3 15.6 120 103-225 52-174 (198)
103 PRK15359 type III secretion sy 98.4 3.8E-05 8.3E-10 58.9 15.6 96 128-225 27-122 (144)
104 PRK04841 transcriptional regul 98.4 0.00047 1E-08 70.5 28.1 326 66-413 386-750 (903)
105 TIGR03302 OM_YfiO outer membra 98.4 6.1E-05 1.3E-09 63.5 18.2 171 87-312 30-232 (235)
106 TIGR00756 PPR pentatricopeptid 98.4 7.1E-07 1.5E-11 49.8 4.1 35 360-394 1-35 (35)
107 PRK14720 transcript cleavage f 98.4 0.00027 5.9E-09 69.1 23.7 207 66-329 43-268 (906)
108 TIGR02552 LcrH_SycD type III s 98.4 2.7E-05 5.8E-10 59.3 14.1 117 76-198 5-121 (135)
109 KOG3785 Uncharacterized conser 98.3 0.00062 1.3E-08 58.0 22.5 289 69-397 166-497 (557)
110 KOG3081 Vesicle coat complex C 98.3 0.00049 1.1E-08 56.3 20.9 159 68-248 22-181 (299)
111 PF13812 PPR_3: Pentatricopept 98.3 9.2E-07 2E-11 48.9 4.0 33 360-392 2-34 (34)
112 TIGR00756 PPR pentatricopeptid 98.3 1E-06 2.2E-11 49.1 4.1 35 284-318 1-35 (35)
113 TIGR02552 LcrH_SycD type III s 98.3 4.4E-05 9.5E-10 58.1 14.5 121 112-244 5-126 (135)
114 KOG1125 TPR repeat-containing 98.3 0.00016 3.5E-09 65.3 19.5 252 134-411 294-559 (579)
115 PF13812 PPR_3: Pentatricopept 98.3 1.1E-06 2.3E-11 48.7 3.8 33 91-123 2-34 (34)
116 PRK04841 transcriptional regul 98.3 0.00096 2.1E-08 68.3 27.4 90 293-388 663-760 (903)
117 COG5010 TadD Flp pilus assembl 98.3 0.00041 8.9E-09 56.7 19.2 158 124-339 66-223 (257)
118 KOG0624 dsRNA-activated protei 98.3 0.0013 2.8E-08 55.9 22.5 156 63-223 47-217 (504)
119 KOG3617 WD40 and TPR repeat-co 98.3 0.00021 4.5E-09 67.4 19.6 241 63-339 737-988 (1416)
120 COG4783 Putative Zn-dependent 98.3 0.00099 2.1E-08 59.4 22.7 201 69-312 252-454 (484)
121 KOG0624 dsRNA-activated protei 98.2 0.001 2.2E-08 56.5 21.6 263 66-353 84-370 (504)
122 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.8E-05 1E-09 67.9 14.6 123 94-223 173-296 (395)
123 PF08579 RPM2: Mitochondrial r 98.2 1.9E-05 4E-10 55.5 9.3 78 95-172 30-116 (120)
124 KOG3081 Vesicle coat complex C 98.2 0.00019 4.1E-09 58.7 16.2 161 74-252 93-257 (299)
125 PRK14720 transcript cleavage f 98.2 0.0014 3E-08 64.4 24.1 131 87-223 28-177 (906)
126 COG4783 Putative Zn-dependent 98.2 0.00023 5E-09 63.2 17.1 112 102-218 318-431 (484)
127 PF10037 MRP-S27: Mitochondria 98.2 3.7E-05 8E-10 68.9 12.5 119 124-248 65-185 (429)
128 KOG0548 Molecular co-chaperone 98.2 0.00065 1.4E-08 61.0 19.9 302 97-413 9-411 (539)
129 PF08579 RPM2: Mitochondrial r 98.1 5.1E-05 1.1E-09 53.3 10.2 80 129-208 29-117 (120)
130 PRK15179 Vi polysaccharide bio 98.1 0.0015 3.2E-08 63.3 23.3 97 125-223 86-182 (694)
131 PF09976 TPR_21: Tetratricopep 98.1 0.00022 4.7E-09 54.9 14.2 125 92-221 14-144 (145)
132 PF01535 PPR: PPR repeat; Int 98.1 4.5E-06 9.7E-11 45.0 3.1 31 360-390 1-31 (31)
133 PF01535 PPR: PPR repeat; Int 98.0 6.5E-06 1.4E-10 44.3 3.3 31 284-314 1-31 (31)
134 KOG3617 WD40 and TPR repeat-co 98.0 0.005 1.1E-07 58.5 23.6 304 67-412 813-1189(1416)
135 KOG3616 Selective LIM binding 98.0 0.00025 5.5E-09 66.0 15.2 107 202-339 739-845 (1636)
136 KOG4340 Uncharacterized conser 98.0 0.0012 2.7E-08 54.9 17.7 191 93-315 13-210 (459)
137 KOG2047 mRNA splicing factor [ 98.0 0.013 2.7E-07 54.4 31.4 327 38-387 52-453 (835)
138 PF06239 ECSIT: Evolutionarily 98.0 0.00016 3.5E-09 57.5 11.8 72 104-175 66-153 (228)
139 KOG2053 Mitochondrial inherita 98.0 0.011 2.4E-07 56.7 25.3 109 63-178 18-128 (932)
140 PF10037 MRP-S27: Mitochondria 98.0 0.00017 3.6E-09 64.8 12.9 121 88-208 64-186 (429)
141 KOG2053 Mitochondrial inherita 98.0 0.0092 2E-07 57.3 24.5 114 101-220 20-139 (932)
142 KOG3616 Selective LIM binding 97.9 0.0023 5E-08 59.9 19.7 104 291-413 740-843 (1636)
143 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00017 3.6E-09 64.4 12.1 113 288-413 174-287 (395)
144 KOG3060 Uncharacterized conser 97.9 0.0085 1.9E-07 49.0 21.5 155 65-223 23-182 (289)
145 KOG4162 Predicted calmodulin-b 97.9 0.024 5.2E-07 53.7 25.4 205 155-387 318-541 (799)
146 cd00189 TPR Tetratricopeptide 97.9 0.00031 6.8E-09 49.1 11.0 91 131-223 6-96 (100)
147 PF09976 TPR_21: Tetratricopep 97.9 0.0005 1.1E-08 52.9 12.6 117 66-186 23-144 (145)
148 KOG0985 Vesicle coat protein c 97.9 0.011 2.5E-07 57.5 23.1 192 161-411 1105-1296(1666)
149 KOG2376 Signal recognition par 97.8 0.022 4.8E-07 52.3 23.6 205 94-314 16-255 (652)
150 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00071 1.5E-08 49.9 12.5 99 92-190 4-106 (119)
151 PF06239 ECSIT: Evolutionarily 97.8 0.00051 1.1E-08 54.8 11.6 70 174-249 66-151 (228)
152 PF05843 Suf: Suppressor of fo 97.8 0.00061 1.3E-08 58.8 13.1 145 91-246 2-150 (280)
153 PRK02603 photosystem I assembl 97.8 0.0015 3.2E-08 52.0 14.4 88 88-176 33-122 (172)
154 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0013 2.9E-08 48.4 12.9 100 126-225 3-106 (119)
155 PLN03088 SGT1, suppressor of 97.7 0.0011 2.4E-08 59.4 14.2 93 96-190 8-100 (356)
156 cd00189 TPR Tetratricopeptide 97.7 0.00062 1.3E-08 47.5 10.6 96 92-189 2-97 (100)
157 KOG0553 TPR repeat-containing 97.7 0.0029 6.2E-08 53.0 15.2 106 134-249 90-195 (304)
158 PF12895 Apc3: Anaphase-promot 97.7 6.8E-05 1.5E-09 51.5 5.0 81 68-150 3-83 (84)
159 PF14559 TPR_19: Tetratricopep 97.7 9.2E-05 2E-09 48.5 4.8 64 65-132 2-65 (68)
160 CHL00033 ycf3 photosystem I as 97.7 0.0015 3.2E-08 51.8 12.6 115 70-185 15-138 (168)
161 PF05843 Suf: Suppressor of fo 97.7 0.0013 2.9E-08 56.7 12.9 28 197-224 3-30 (280)
162 PF04840 Vps16_C: Vps16, C-ter 97.6 0.012 2.6E-07 51.5 18.6 103 285-413 179-281 (319)
163 KOG1127 TPR repeat-containing 97.6 0.0092 2E-07 58.0 18.4 147 70-223 474-658 (1238)
164 KOG3060 Uncharacterized conser 97.6 0.029 6.3E-07 46.0 21.4 186 103-312 25-220 (289)
165 PRK02603 photosystem I assembl 97.6 0.0062 1.3E-07 48.4 15.0 99 124-223 34-148 (172)
166 PF12895 Apc3: Anaphase-promot 97.6 0.00018 4E-09 49.4 5.4 80 139-220 3-83 (84)
167 KOG1914 mRNA cleavage and poly 97.6 0.059 1.3E-06 49.1 25.4 51 67-119 32-82 (656)
168 PLN03088 SGT1, suppressor of 97.6 0.0027 5.8E-08 56.9 14.0 90 63-155 11-100 (356)
169 PRK10153 DNA-binding transcrip 97.5 0.0073 1.6E-07 56.7 17.1 142 87-240 334-490 (517)
170 KOG1914 mRNA cleavage and poly 97.5 0.024 5.2E-07 51.5 19.0 142 176-339 347-493 (656)
171 PF14938 SNAP: Soluble NSF att 97.5 0.023 4.9E-07 49.3 18.9 106 286-401 158-275 (282)
172 KOG1127 TPR repeat-containing 97.5 0.02 4.4E-07 55.8 18.8 179 106-310 474-657 (1238)
173 PF14559 TPR_19: Tetratricopep 97.5 0.00077 1.7E-08 44.0 6.9 52 171-223 2-53 (68)
174 KOG3941 Intermediate in Toll s 97.4 0.002 4.4E-08 53.3 9.6 33 143-175 141-173 (406)
175 CHL00033 ycf3 photosystem I as 97.3 0.0071 1.5E-07 47.9 12.3 115 106-221 15-139 (168)
176 PF12688 TPR_5: Tetratrico pep 97.3 0.017 3.7E-07 42.3 13.1 105 96-206 7-117 (120)
177 PRK15363 pathogenicity island 97.3 0.0024 5.2E-08 48.6 8.7 99 89-189 34-132 (157)
178 PRK15363 pathogenicity island 97.3 0.0082 1.8E-07 45.8 11.1 99 125-225 35-133 (157)
179 PRK10866 outer membrane biogen 97.2 0.048 1E-06 45.9 16.9 154 65-223 43-240 (243)
180 PF13432 TPR_16: Tetratricopep 97.2 0.0019 4.1E-08 41.7 6.8 56 167-223 4-59 (65)
181 KOG0553 TPR repeat-containing 97.2 0.0047 1E-07 51.8 10.4 103 293-406 91-194 (304)
182 PF12688 TPR_5: Tetratrico pep 97.2 0.029 6.3E-07 41.1 12.9 106 131-248 7-118 (120)
183 PF13414 TPR_11: TPR repeat; P 97.1 0.0033 7.1E-08 41.1 7.2 63 160-223 3-66 (69)
184 PF03704 BTAD: Bacterial trans 97.1 0.017 3.6E-07 44.5 12.3 70 128-198 65-139 (146)
185 COG4235 Cytochrome c biogenesi 97.1 0.04 8.6E-07 46.6 14.7 116 70-189 138-256 (287)
186 PF12921 ATP13: Mitochondrial 97.1 0.012 2.7E-07 43.5 10.6 88 317-410 1-104 (126)
187 PF14938 SNAP: Soluble NSF att 97.1 0.055 1.2E-06 46.9 16.4 110 291-406 122-247 (282)
188 PF12921 ATP13: Mitochondrial 97.0 0.011 2.4E-07 43.8 9.7 54 190-248 47-100 (126)
189 PF13432 TPR_16: Tetratricopep 97.0 0.0038 8.3E-08 40.2 6.6 54 134-188 6-59 (65)
190 PRK10803 tol-pal system protei 97.0 0.016 3.5E-07 49.2 11.9 62 163-224 183-246 (263)
191 KOG2796 Uncharacterized conser 97.0 0.042 9.1E-07 45.3 13.1 147 91-246 178-329 (366)
192 PRK10153 DNA-binding transcrip 96.9 0.023 4.9E-07 53.5 13.5 127 67-199 355-490 (517)
193 PF13414 TPR_11: TPR repeat; P 96.9 0.0068 1.5E-07 39.6 6.9 63 90-153 3-66 (69)
194 COG4235 Cytochrome c biogenesi 96.9 0.12 2.5E-06 43.8 15.4 115 122-246 153-270 (287)
195 PRK10803 tol-pal system protei 96.8 0.03 6.5E-07 47.6 12.0 103 90-196 143-251 (263)
196 PRK10866 outer membrane biogen 96.8 0.26 5.7E-06 41.5 21.0 56 133-189 40-98 (243)
197 PF13371 TPR_9: Tetratricopept 96.8 0.012 2.7E-07 38.8 7.7 55 168-223 3-57 (73)
198 KOG2041 WD40 repeat protein [G 96.6 0.14 3E-06 48.3 15.6 245 69-385 678-936 (1189)
199 PF03704 BTAD: Bacterial trans 96.6 0.011 2.5E-07 45.4 7.8 73 91-164 63-140 (146)
200 KOG2796 Uncharacterized conser 96.6 0.1 2.2E-06 43.2 12.8 145 162-363 179-323 (366)
201 PF13281 DUF4071: Domain of un 96.6 0.5 1.1E-05 42.1 18.2 172 125-312 141-334 (374)
202 PF13371 TPR_9: Tetratricopept 96.5 0.02 4.4E-07 37.8 7.4 55 134-189 4-58 (73)
203 KOG0550 Molecular chaperone (D 96.4 0.6 1.3E-05 41.5 18.9 286 60-407 55-370 (486)
204 COG3118 Thioredoxin domain-con 96.4 0.43 9.3E-06 40.5 15.7 147 63-213 143-290 (304)
205 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.19 4E-06 45.5 14.1 53 66-118 87-140 (453)
206 KOG3941 Intermediate in Toll s 96.3 0.037 8E-07 46.1 9.0 106 87-211 64-174 (406)
207 KOG1130 Predicted G-alpha GTPa 96.3 0.071 1.5E-06 47.0 11.2 122 264-387 208-343 (639)
208 COG4700 Uncharacterized protei 96.3 0.38 8.2E-06 37.8 15.9 132 87-220 86-218 (251)
209 PF04840 Vps16_C: Vps16, C-ter 96.3 0.72 1.6E-05 40.6 21.2 105 197-339 179-283 (319)
210 PF13424 TPR_12: Tetratricopep 96.3 0.011 2.3E-07 39.8 5.0 64 318-387 5-74 (78)
211 PF09205 DUF1955: Domain of un 96.3 0.3 6.4E-06 35.9 14.9 138 170-356 12-152 (161)
212 PF13424 TPR_12: Tetratricopep 96.2 0.021 4.5E-07 38.4 6.1 62 161-222 6-73 (78)
213 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.14 2.9E-06 46.3 12.5 66 87-154 72-141 (453)
214 KOG2280 Vacuolar assembly/sort 96.2 1.3 2.8E-05 42.6 20.7 320 57-414 440-790 (829)
215 KOG1538 Uncharacterized conser 96.1 0.3 6.5E-06 45.8 14.4 24 288-311 778-801 (1081)
216 PF13525 YfiO: Outer membrane 96.1 0.65 1.4E-05 38.0 18.0 21 291-311 149-169 (203)
217 KOG2041 WD40 repeat protein [G 96.0 0.88 1.9E-05 43.3 17.1 48 361-408 1023-1071(1189)
218 COG3898 Uncharacterized membra 96.0 0.99 2.1E-05 39.9 27.0 293 70-405 69-373 (531)
219 KOG2610 Uncharacterized conser 96.0 0.24 5.3E-06 42.6 12.4 155 65-222 114-274 (491)
220 KOG1130 Predicted G-alpha GTPa 95.9 0.095 2E-06 46.2 9.7 128 284-413 196-334 (639)
221 PF13525 YfiO: Outer membrane 95.8 0.89 1.9E-05 37.2 17.5 150 65-225 16-171 (203)
222 PRK15331 chaperone protein Sic 95.6 0.21 4.5E-06 38.5 9.8 89 292-388 46-134 (165)
223 PRK15331 chaperone protein Sic 95.6 0.1 2.3E-06 40.1 8.2 94 94-189 41-134 (165)
224 COG4105 ComL DNA uptake lipopr 95.6 1.1 2.4E-05 37.3 18.5 157 65-223 45-232 (254)
225 COG5107 RNA14 Pre-mRNA 3'-end 95.5 1.1 2.4E-05 40.4 14.7 147 90-248 397-547 (660)
226 PF13281 DUF4071: Domain of un 95.4 1.8 4E-05 38.6 19.4 182 161-388 142-334 (374)
227 PF04053 Coatomer_WDAD: Coatom 95.4 0.27 5.8E-06 45.4 11.5 129 68-225 275-403 (443)
228 COG1729 Uncharacterized protei 95.2 0.23 4.9E-06 41.6 9.5 99 90-189 142-244 (262)
229 smart00299 CLH Clathrin heavy 95.2 1 2.2E-05 34.2 14.5 44 94-138 11-54 (140)
230 PF13512 TPR_18: Tetratricopep 95.1 0.84 1.8E-05 34.4 11.3 78 96-173 16-95 (142)
231 KOG1538 Uncharacterized conser 95.1 1.6 3.5E-05 41.2 15.2 76 291-385 755-830 (1081)
232 COG4700 Uncharacterized protei 95.1 1.3 2.9E-05 34.9 16.7 141 156-352 85-225 (251)
233 PF04053 Coatomer_WDAD: Coatom 95.0 1.4 3.1E-05 40.7 15.1 157 170-385 271-428 (443)
234 PF13170 DUF4003: Protein of u 95.0 2.2 4.8E-05 37.1 19.2 140 176-366 78-224 (297)
235 COG4649 Uncharacterized protei 95.0 1.2 2.7E-05 34.5 11.9 122 102-223 70-195 (221)
236 PF10300 DUF3808: Protein of u 94.9 3.3 7.2E-05 38.9 17.8 145 93-246 191-349 (468)
237 PF07079 DUF1347: Protein of u 94.9 2.9 6.3E-05 37.9 25.4 138 66-207 18-179 (549)
238 KOG2280 Vacuolar assembly/sort 94.8 4 8.7E-05 39.4 20.0 289 95-413 442-763 (829)
239 PF09613 HrpB1_HrpK: Bacterial 94.8 0.86 1.9E-05 35.1 10.9 50 68-119 24-73 (160)
240 PF10300 DUF3808: Protein of u 94.7 0.95 2.1E-05 42.4 13.2 166 199-387 192-375 (468)
241 KOG4555 TPR repeat-containing 94.6 0.89 1.9E-05 33.4 9.9 89 64-155 53-145 (175)
242 COG3629 DnrI DNA-binding trans 94.6 0.22 4.7E-06 42.4 8.0 102 65-171 132-238 (280)
243 KOG0543 FKBP-type peptidyl-pro 94.5 0.51 1.1E-05 41.8 10.3 142 58-224 212-355 (397)
244 COG4649 Uncharacterized protei 94.4 1.8 4E-05 33.7 13.2 127 64-190 68-197 (221)
245 KOG0543 FKBP-type peptidyl-pro 94.3 0.98 2.1E-05 40.1 11.5 66 160-226 257-322 (397)
246 KOG2114 Vacuolar assembly/sort 94.2 6.1 0.00013 38.8 18.9 87 53-147 367-453 (933)
247 COG1729 Uncharacterized protei 94.0 2.1 4.6E-05 36.0 12.4 100 125-225 142-245 (262)
248 KOG0550 Molecular chaperone (D 93.9 4.6 0.0001 36.2 15.9 153 65-225 180-351 (486)
249 PRK11906 transcriptional regul 93.8 5.3 0.00011 36.6 16.9 130 91-223 252-400 (458)
250 PF04184 ST7: ST7 protein; In 93.7 4.5 9.8E-05 37.3 14.7 63 162-224 261-324 (539)
251 PF10602 RPN7: 26S proteasome 93.6 3 6.5E-05 33.2 12.3 64 161-224 37-102 (177)
252 COG5107 RNA14 Pre-mRNA 3'-end 93.6 5.6 0.00012 36.1 25.1 118 283-410 397-518 (660)
253 PRK11906 transcriptional regul 93.5 5.9 0.00013 36.3 15.4 150 69-223 273-435 (458)
254 PF10602 RPN7: 26S proteasome 93.5 1.3 2.8E-05 35.2 10.1 97 127-225 38-143 (177)
255 PF13428 TPR_14: Tetratricopep 93.5 0.42 9E-06 27.7 5.6 28 162-189 3-30 (44)
256 COG3629 DnrI DNA-binding trans 93.5 1.1 2.5E-05 38.1 10.1 77 127-204 155-236 (280)
257 PF13512 TPR_18: Tetratricopep 93.5 0.93 2E-05 34.2 8.5 75 65-139 21-96 (142)
258 smart00299 CLH Clathrin heavy 93.4 2.7 5.8E-05 31.9 14.3 127 198-371 10-137 (140)
259 PF07079 DUF1347: Protein of u 93.2 3.4 7.5E-05 37.5 12.9 47 361-407 130-180 (549)
260 PF13428 TPR_14: Tetratricopep 93.1 0.31 6.7E-06 28.3 4.6 39 285-324 3-41 (44)
261 PF07035 Mic1: Colon cancer-as 92.9 3.6 7.9E-05 32.1 14.6 137 73-224 13-149 (167)
262 cd00923 Cyt_c_Oxidase_Va Cytoc 92.9 0.72 1.6E-05 31.8 6.5 58 346-404 29-86 (103)
263 KOG1941 Acetylcholine receptor 92.9 5.4 0.00012 35.2 13.2 102 282-386 161-273 (518)
264 PF13170 DUF4003: Protein of u 92.8 5.7 0.00012 34.6 13.7 131 70-203 78-225 (297)
265 PF08631 SPO22: Meiosis protei 92.7 6.2 0.00013 34.2 24.7 63 161-224 85-150 (278)
266 PF13431 TPR_17: Tetratricopep 92.7 0.14 3.1E-06 27.7 2.5 32 77-110 2-33 (34)
267 PF04184 ST7: ST7 protein; In 92.5 6 0.00013 36.5 13.6 135 66-204 180-340 (539)
268 KOG2610 Uncharacterized conser 92.4 7 0.00015 34.1 13.8 121 101-223 114-237 (491)
269 PF13176 TPR_7: Tetratricopept 92.3 0.3 6.5E-06 26.8 3.7 26 361-386 1-26 (36)
270 PF13929 mRNA_stabil: mRNA sta 92.2 6.4 0.00014 33.6 12.7 124 93-219 134-262 (292)
271 PF13176 TPR_7: Tetratricopept 92.1 0.42 9.2E-06 26.2 4.1 23 163-185 2-24 (36)
272 TIGR02561 HrpB1_HrpK type III 92.1 4.2 9E-05 30.9 10.5 51 67-119 23-73 (153)
273 PF02284 COX5A: Cytochrome c o 92.0 2 4.4E-05 30.0 7.9 58 346-404 32-89 (108)
274 PF09205 DUF1955: Domain of un 92.0 3.9 8.6E-05 30.3 13.5 68 317-391 85-152 (161)
275 PF08631 SPO22: Meiosis protei 91.2 9.2 0.0002 33.1 22.6 158 65-225 4-187 (278)
276 KOG1920 IkappaB kinase complex 91.2 20 0.00044 37.0 20.2 120 232-385 931-1052(1265)
277 KOG4570 Uncharacterized conser 90.9 3.6 7.7E-05 35.4 9.8 42 298-339 115-156 (418)
278 cd00923 Cyt_c_Oxidase_Va Cytoc 90.9 2.4 5.2E-05 29.3 7.3 44 109-152 26-69 (103)
279 KOG1585 Protein required for f 90.5 9.2 0.0002 31.8 15.5 53 286-339 193-248 (308)
280 KOG4555 TPR repeat-containing 90.5 5.7 0.00012 29.4 11.3 92 98-190 51-145 (175)
281 PF11207 DUF2989: Protein of u 90.5 2.6 5.6E-05 33.9 8.4 78 328-413 117-197 (203)
282 PF00515 TPR_1: Tetratricopept 90.0 0.75 1.6E-05 24.6 3.7 28 360-387 2-29 (34)
283 KOG1920 IkappaB kinase complex 89.8 27 0.00058 36.2 18.6 31 157-188 788-820 (1265)
284 COG3118 Thioredoxin domain-con 89.8 12 0.00026 32.1 15.3 146 96-249 140-285 (304)
285 PF00515 TPR_1: Tetratricopept 89.3 1.2 2.6E-05 23.8 4.3 28 196-223 2-29 (34)
286 KOG4570 Uncharacterized conser 89.3 2.2 4.8E-05 36.6 7.4 48 140-187 115-162 (418)
287 PF13431 TPR_17: Tetratricopep 88.8 0.66 1.4E-05 25.1 2.9 20 195-214 13-32 (34)
288 PF07035 Mic1: Colon cancer-as 88.6 10 0.00022 29.7 13.7 36 181-216 15-50 (167)
289 KOG0890 Protein kinase of the 88.6 47 0.001 37.3 21.1 145 67-219 1396-1542(2382)
290 KOG2114 Vacuolar assembly/sort 88.5 12 0.00026 37.0 12.4 118 93-222 337-458 (933)
291 PF11207 DUF2989: Protein of u 88.2 8 0.00017 31.2 9.6 79 135-215 117-198 (203)
292 COG3898 Uncharacterized membra 88.2 19 0.00041 32.3 27.7 295 57-392 85-396 (531)
293 PF13374 TPR_10: Tetratricopep 88.1 1.5 3.3E-05 24.6 4.4 26 162-187 4-29 (42)
294 PF02259 FAT: FAT domain; Int 88.1 19 0.00041 32.2 15.8 66 316-387 144-212 (352)
295 PF07719 TPR_2: Tetratricopept 87.9 1.2 2.7E-05 23.6 3.7 29 360-388 2-30 (34)
296 KOG1585 Protein required for f 87.8 15 0.00032 30.7 13.4 87 289-382 156-250 (308)
297 PF09613 HrpB1_HrpK: Bacterial 87.5 11 0.00025 29.1 11.6 53 293-353 20-73 (160)
298 PF00637 Clathrin: Region in C 87.5 0.3 6.6E-06 37.3 1.4 84 132-222 14-97 (143)
299 PF07719 TPR_2: Tetratricopept 87.0 2 4.4E-05 22.7 4.3 27 197-223 3-29 (34)
300 PF13374 TPR_10: Tetratricopep 86.9 1.7 3.8E-05 24.3 4.1 29 195-223 2-30 (42)
301 PF02284 COX5A: Cytochrome c o 86.8 8.8 0.00019 27.0 9.1 43 146-188 31-73 (108)
302 COG1747 Uncharacterized N-term 86.8 27 0.00059 32.6 15.0 133 88-225 64-235 (711)
303 PF00637 Clathrin: Region in C 86.1 0.36 7.7E-06 36.9 1.1 115 289-411 13-142 (143)
304 PF13762 MNE1: Mitochondrial s 86.0 11 0.00023 28.7 8.8 81 93-173 42-128 (145)
305 KOG4279 Serine/threonine prote 85.7 38 0.00083 33.3 14.4 187 108-312 181-395 (1226)
306 TIGR02561 HrpB1_HrpK type III 85.7 14 0.0003 28.2 11.8 51 171-225 21-74 (153)
307 PF07163 Pex26: Pex26 protein; 85.4 12 0.00027 31.7 9.6 90 94-183 87-181 (309)
308 COG4455 ImpE Protein of avirul 85.1 3.2 6.9E-05 33.7 5.8 68 65-134 12-81 (273)
309 PF02259 FAT: FAT domain; Int 85.0 28 0.00061 31.1 22.0 57 283-339 146-205 (352)
310 PF07163 Pex26: Pex26 protein; 84.9 22 0.00047 30.4 10.7 87 132-218 90-181 (309)
311 KOG4077 Cytochrome c oxidase, 84.5 7.5 0.00016 28.5 6.9 57 346-403 71-127 (149)
312 PF13762 MNE1: Mitochondrial s 84.1 16 0.00036 27.7 11.4 100 114-213 26-133 (145)
313 KOG0276 Vesicle coat complex C 83.9 16 0.00034 34.7 10.4 101 100-221 647-747 (794)
314 KOG1550 Extracellular protein 83.7 44 0.00095 32.3 20.1 148 69-225 227-394 (552)
315 KOG2063 Vacuolar assembly/sort 83.4 55 0.0012 33.3 15.0 117 92-208 506-639 (877)
316 KOG4648 Uncharacterized conser 83.3 13 0.00028 32.6 9.1 108 48-160 89-198 (536)
317 PF13181 TPR_8: Tetratricopept 82.7 3.4 7.3E-05 21.9 3.9 27 197-223 3-29 (34)
318 PF13174 TPR_6: Tetratricopept 82.6 1.6 3.5E-05 22.9 2.5 24 96-119 6-29 (33)
319 TIGR03504 FimV_Cterm FimV C-te 82.4 3 6.6E-05 24.2 3.6 27 364-390 4-30 (44)
320 KOG2297 Predicted translation 82.4 32 0.00069 29.8 14.8 72 169-260 264-345 (412)
321 KOG1941 Acetylcholine receptor 82.3 36 0.00078 30.3 15.6 158 66-223 18-190 (518)
322 COG3947 Response regulator con 80.8 14 0.0003 31.7 8.2 59 162-221 281-339 (361)
323 COG4455 ImpE Protein of avirul 80.7 15 0.00033 30.0 8.0 58 129-187 5-62 (273)
324 TIGR03504 FimV_Cterm FimV C-te 80.5 3.8 8.2E-05 23.8 3.5 25 166-190 5-29 (44)
325 PF07721 TPR_4: Tetratricopept 80.4 3.1 6.8E-05 20.7 2.9 23 362-384 4-26 (26)
326 PF06552 TOM20_plant: Plant sp 79.9 19 0.00041 28.5 8.2 97 70-170 7-123 (186)
327 KOG0276 Vesicle coat complex C 79.8 26 0.00057 33.4 10.3 101 64-186 647-747 (794)
328 KOG1550 Extracellular protein 79.7 62 0.0013 31.4 14.7 158 64-225 259-427 (552)
329 COG4105 ComL DNA uptake lipopr 79.5 37 0.0008 28.6 21.0 50 289-339 173-225 (254)
330 TIGR02508 type_III_yscG type I 79.1 20 0.00042 25.2 7.6 77 69-155 20-98 (115)
331 PF13181 TPR_8: Tetratricopept 78.3 6.1 0.00013 20.8 3.9 28 360-387 2-29 (34)
332 PF06552 TOM20_plant: Plant sp 78.3 19 0.00041 28.5 7.8 78 70-157 51-139 (186)
333 TIGR02508 type_III_yscG type I 78.1 21 0.00046 25.1 7.1 52 168-225 47-98 (115)
334 COG0457 NrfG FOG: TPR repeat [ 78.0 35 0.00076 27.6 24.4 157 68-225 37-197 (291)
335 PF09477 Type_III_YscG: Bacter 77.7 23 0.00049 25.3 7.3 79 69-155 21-99 (116)
336 PRK15180 Vi polysaccharide bio 76.6 65 0.0014 30.0 20.9 118 67-189 302-420 (831)
337 PF11848 DUF3368: Domain of un 76.4 11 0.00023 22.4 4.8 35 369-403 12-46 (48)
338 PF04097 Nic96: Nup93/Nic96; 74.0 32 0.0007 33.7 10.1 28 359-386 500-532 (613)
339 PRK15180 Vi polysaccharide bio 73.5 23 0.00049 32.7 8.0 117 263-387 301-419 (831)
340 COG5159 RPN6 26S proteasome re 73.5 59 0.0013 28.0 11.2 125 97-221 10-151 (421)
341 KOG2659 LisH motif-containing 72.9 53 0.0011 27.2 9.3 97 87-185 23-128 (228)
342 PF15297 CKAP2_C: Cytoskeleton 72.7 58 0.0013 28.9 10.0 63 107-171 120-186 (353)
343 KOG4234 TPR repeat-containing 72.2 51 0.0011 26.8 8.7 89 98-189 103-197 (271)
344 COG4785 NlpI Lipoprotein NlpI, 71.8 56 0.0012 26.9 18.1 29 284-312 238-266 (297)
345 PF11848 DUF3368: Domain of un 71.7 17 0.00036 21.5 4.8 31 102-132 14-44 (48)
346 KOG2066 Vacuolar assembly/sort 71.3 1.1E+02 0.0025 30.4 21.3 149 65-223 367-533 (846)
347 PHA02875 ankyrin repeat protei 71.1 79 0.0017 29.1 11.7 79 98-184 7-89 (413)
348 PF14689 SPOB_a: Sensor_kinase 71.0 15 0.00032 23.2 4.8 26 198-223 26-51 (62)
349 KOG4648 Uncharacterized conser 71.0 37 0.00079 30.0 8.4 93 97-194 104-197 (536)
350 PF09477 Type_III_YscG: Bacter 70.7 36 0.00078 24.3 7.3 79 140-225 21-99 (116)
351 COG2909 MalT ATP-dependent tra 70.5 1.3E+02 0.0027 30.6 23.6 93 206-311 426-525 (894)
352 COG0457 NrfG FOG: TPR repeat [ 70.4 55 0.0012 26.3 27.5 226 103-388 36-265 (291)
353 KOG4077 Cytochrome c oxidase, 70.2 31 0.00066 25.5 6.6 47 108-154 67-113 (149)
354 KOG4234 TPR repeat-containing 70.2 52 0.0011 26.7 8.4 94 61-155 102-198 (271)
355 KOG2297 Predicted translation 70.1 74 0.0016 27.7 15.2 21 359-379 321-341 (412)
356 KOG2066 Vacuolar assembly/sort 69.5 1.2E+02 0.0027 30.1 14.0 54 168-223 364-420 (846)
357 KOG2063 Vacuolar assembly/sort 68.6 1.4E+02 0.0031 30.5 14.1 206 197-407 506-745 (877)
358 PF10579 Rapsyn_N: Rapsyn N-te 68.3 24 0.00051 23.6 5.2 46 172-217 18-65 (80)
359 COG5108 RPO41 Mitochondrial DN 67.8 50 0.0011 32.0 9.2 81 288-371 33-115 (1117)
360 PF10579 Rapsyn_N: Rapsyn N-te 67.4 19 0.0004 24.0 4.7 46 137-182 18-65 (80)
361 PF13929 mRNA_stabil: mRNA sta 67.1 84 0.0018 27.2 16.3 135 265-405 142-289 (292)
362 KOG4507 Uncharacterized conser 66.6 52 0.0011 31.5 8.9 132 71-206 590-721 (886)
363 cd00280 TRFH Telomeric Repeat 66.4 48 0.001 26.4 7.4 67 340-409 85-158 (200)
364 PRK10564 maltose regulon perip 65.6 16 0.00036 31.5 5.3 48 354-401 251-299 (303)
365 PF11846 DUF3366: Domain of un 65.4 50 0.0011 26.6 8.1 43 346-392 133-175 (193)
366 PF08424 NRDE-2: NRDE-2, neces 65.3 1E+02 0.0022 27.4 16.8 145 77-225 8-184 (321)
367 KOG0686 COP9 signalosome, subu 64.9 1.1E+02 0.0024 27.8 13.8 119 126-246 151-280 (466)
368 PF14689 SPOB_a: Sensor_kinase 64.8 18 0.00039 22.8 4.2 45 71-118 7-51 (62)
369 COG0735 Fur Fe2+/Zn2+ uptake r 64.6 62 0.0013 24.7 8.1 26 131-156 26-51 (145)
370 COG3947 Response regulator con 63.7 99 0.0022 26.8 15.9 53 286-339 282-334 (361)
371 smart00028 TPR Tetratricopepti 63.2 17 0.00037 17.8 3.8 27 197-223 3-29 (34)
372 KOG0687 26S proteasome regulat 62.9 1.1E+02 0.0024 27.0 14.3 95 286-388 107-210 (393)
373 COG4785 NlpI Lipoprotein NlpI, 62.7 88 0.0019 25.9 15.4 32 359-390 237-268 (297)
374 COG2909 MalT ATP-dependent tra 62.0 1.9E+02 0.0041 29.5 21.4 90 100-189 425-526 (894)
375 PF11663 Toxin_YhaV: Toxin wit 61.8 12 0.00026 27.9 3.3 29 139-169 109-137 (140)
376 cd08819 CARD_MDA5_2 Caspase ac 61.4 50 0.0011 22.6 6.2 14 139-152 50-63 (88)
377 PRK10564 maltose regulon perip 61.1 17 0.00036 31.4 4.6 44 87-130 253-297 (303)
378 PF11846 DUF3366: Domain of un 60.9 44 0.00095 26.9 7.0 31 157-187 141-171 (193)
379 KOG4567 GTPase-activating prot 60.8 56 0.0012 28.4 7.4 72 303-385 263-344 (370)
380 PF11838 ERAP1_C: ERAP1-like C 58.0 1.3E+02 0.0029 26.4 12.1 86 102-190 142-231 (324)
381 PF06957 COPI_C: Coatomer (COP 57.6 41 0.00088 31.0 6.6 123 45-190 200-330 (422)
382 PRK09687 putative lyase; Provi 57.6 1.3E+02 0.0028 26.1 27.6 236 87-406 34-279 (280)
383 PRK10941 hypothetical protein; 57.4 70 0.0015 27.5 7.8 76 94-171 185-262 (269)
384 PF07575 Nucleopor_Nup85: Nup8 57.0 1E+02 0.0023 29.9 9.9 30 297-326 509-538 (566)
385 PF10366 Vps39_1: Vacuolar sor 56.9 71 0.0015 22.9 9.1 27 285-311 41-67 (108)
386 PHA02875 ankyrin repeat protei 56.8 1.6E+02 0.0035 27.1 13.1 135 67-218 12-155 (413)
387 cd08819 CARD_MDA5_2 Caspase ac 56.8 61 0.0013 22.2 5.9 15 361-375 68-82 (88)
388 PF10345 Cohesin_load: Cohesin 56.0 2.1E+02 0.0046 28.2 26.5 180 71-251 38-238 (608)
389 COG5108 RPO41 Mitochondrial DN 56.0 70 0.0015 31.1 7.9 91 95-188 33-131 (1117)
390 KOG2471 TPR repeat-containing 55.9 1.2E+02 0.0027 28.4 9.2 307 92-407 17-382 (696)
391 cd00280 TRFH Telomeric Repeat 55.8 1.1E+02 0.0023 24.6 8.5 42 289-333 117-158 (200)
392 PF09797 NatB_MDM20: N-acetylt 55.5 58 0.0013 29.5 7.5 70 94-164 184-256 (365)
393 PF11663 Toxin_YhaV: Toxin wit 54.5 16 0.00035 27.2 3.0 19 67-85 108-126 (140)
394 KOG4507 Uncharacterized conser 54.4 87 0.0019 30.1 8.2 156 68-226 549-707 (886)
395 COG2976 Uncharacterized protei 54.3 1.2E+02 0.0025 24.7 12.7 92 132-225 96-189 (207)
396 PF09454 Vps23_core: Vps23 cor 54.1 35 0.00076 21.8 4.1 51 356-407 5-55 (65)
397 PF08424 NRDE-2: NRDE-2, neces 53.6 1.6E+02 0.0035 26.1 17.4 97 124-222 18-129 (321)
398 PF09454 Vps23_core: Vps23 cor 51.8 37 0.0008 21.7 4.0 49 158-207 6-54 (65)
399 PF02184 HAT: HAT (Half-A-TPR) 51.1 32 0.0007 18.3 3.0 26 374-401 2-27 (32)
400 smart00386 HAT HAT (Half-A-TPR 51.0 33 0.00071 17.3 4.1 28 69-98 2-29 (33)
401 KOG1308 Hsp70-interacting prot 50.5 12 0.00027 32.8 2.2 92 65-160 125-217 (377)
402 PF11817 Foie-gras_1: Foie gra 49.5 1.3E+02 0.0028 25.5 8.3 28 196-223 179-206 (247)
403 PF04190 DUF410: Protein of un 49.0 1.7E+02 0.0037 25.0 13.1 103 66-184 2-114 (260)
404 PF12862 Apc5: Anaphase-promot 49.0 56 0.0012 22.6 5.0 21 97-117 48-68 (94)
405 PF02847 MA3: MA3 domain; Int 48.5 83 0.0018 22.5 6.1 61 94-156 6-68 (113)
406 COG1747 Uncharacterized N-term 47.9 2.5E+02 0.0055 26.7 22.3 63 158-223 64-126 (711)
407 KOG1464 COP9 signalosome, subu 47.4 1.8E+02 0.004 24.9 22.3 159 65-223 38-219 (440)
408 PF15297 CKAP2_C: Cytoskeleton 47.0 1.2E+02 0.0026 27.0 7.6 59 346-406 125-187 (353)
409 KOG3807 Predicted membrane pro 46.0 1.5E+02 0.0032 26.3 7.8 51 136-188 286-339 (556)
410 PRK10941 hypothetical protein; 45.9 2E+02 0.0043 24.8 10.2 78 163-246 184-261 (269)
411 PF14853 Fis1_TPR_C: Fis1 C-te 45.9 68 0.0015 19.5 5.6 38 364-403 6-43 (53)
412 PF09797 NatB_MDM20: N-acetylt 45.5 1.6E+02 0.0034 26.8 8.7 57 142-199 200-256 (365)
413 PF12990 DUF3874: Domain of un 44.3 75 0.0016 20.9 4.6 56 47-104 4-59 (73)
414 PF11817 Foie-gras_1: Foie gra 44.1 1.1E+02 0.0023 25.9 7.0 58 129-186 182-244 (247)
415 KOG4567 GTPase-activating prot 44.0 2.2E+02 0.0049 25.0 9.3 58 180-248 263-320 (370)
416 KOG3364 Membrane protein invol 44.0 93 0.002 23.5 5.5 66 88-154 30-100 (149)
417 PRK09857 putative transposase; 44.0 2.2E+02 0.0048 24.9 9.1 66 128-194 209-274 (292)
418 KOG0686 COP9 signalosome, subu 43.8 2.6E+02 0.0057 25.7 9.8 89 160-248 150-243 (466)
419 PF10366 Vps39_1: Vacuolar sor 43.5 1.2E+02 0.0026 21.7 6.4 27 361-387 41-67 (108)
420 COG0735 Fur Fe2+/Zn2+ uptake r 43.4 1.5E+02 0.0032 22.7 7.3 60 307-373 10-69 (145)
421 PF10345 Cohesin_load: Cohesin 42.9 3.4E+02 0.0074 26.8 20.6 128 87-224 27-168 (608)
422 PF14669 Asp_Glu_race_2: Putat 42.8 1.8E+02 0.0039 23.5 11.8 57 164-220 136-206 (233)
423 PF09670 Cas_Cas02710: CRISPR- 42.3 2.4E+02 0.0052 25.8 9.2 51 66-118 143-197 (379)
424 COG2976 Uncharacterized protei 42.0 1.9E+02 0.0041 23.5 14.4 89 290-389 96-189 (207)
425 cd07153 Fur_like Ferric uptake 41.8 90 0.002 22.5 5.5 46 96-141 6-51 (116)
426 PF09868 DUF2095: Uncharacteri 41.5 1E+02 0.0022 22.3 5.1 24 132-155 68-91 (128)
427 PF12796 Ank_2: Ankyrin repeat 41.5 1E+02 0.0022 20.6 5.4 15 146-160 40-54 (89)
428 PF12862 Apc5: Anaphase-promot 41.5 1.2E+02 0.0025 21.0 6.6 23 201-223 47-69 (94)
429 KOG3807 Predicted membrane pro 41.2 2.6E+02 0.0056 24.9 11.7 59 164-224 279-340 (556)
430 PF09868 DUF2095: Uncharacteri 41.0 1.4E+02 0.003 21.6 5.8 38 165-203 66-103 (128)
431 PF07575 Nucleopor_Nup85: Nup8 41.0 54 0.0012 31.9 5.2 147 89-245 371-539 (566)
432 KOG0292 Vesicle coat complex C 40.9 4.2E+02 0.0092 27.3 13.3 55 162-217 1086-1140(1202)
433 PF02847 MA3: MA3 domain; Int 40.5 1.3E+02 0.0029 21.4 6.6 64 287-356 6-69 (113)
434 PF10475 DUF2450: Protein of u 40.2 2.5E+02 0.0055 24.5 9.5 109 98-217 106-219 (291)
435 PF12926 MOZART2: Mitotic-spin 39.5 1.2E+02 0.0027 20.7 7.4 43 181-223 29-71 (88)
436 PRK11619 lytic murein transgly 39.3 4E+02 0.0087 26.6 23.2 135 65-211 44-179 (644)
437 PF12926 MOZART2: Mitotic-spin 39.2 1.2E+02 0.0027 20.6 8.1 65 123-189 8-72 (88)
438 PF04097 Nic96: Nup93/Nic96; 39.0 4E+02 0.0086 26.4 21.4 196 92-312 114-356 (613)
439 PF03745 DUF309: Domain of unk 38.9 60 0.0013 20.5 3.5 15 68-82 13-27 (62)
440 cd07153 Fur_like Ferric uptake 38.7 86 0.0019 22.6 4.9 47 365-411 6-52 (116)
441 PRK09462 fur ferric uptake reg 38.6 1.8E+02 0.0039 22.2 7.4 65 347-412 5-70 (148)
442 KOG0481 DNA replication licens 38.2 95 0.0021 29.4 5.8 97 52-154 614-713 (729)
443 COG2256 MGS1 ATPase related to 37.8 3.3E+02 0.0071 25.1 17.7 144 44-192 163-321 (436)
444 PF01475 FUR: Ferric uptake re 37.7 95 0.0021 22.6 5.0 46 95-140 12-57 (120)
445 PRK11639 zinc uptake transcrip 37.5 2E+02 0.0044 22.6 8.3 23 139-161 39-61 (169)
446 PF10475 DUF2450: Protein of u 37.0 2.9E+02 0.0062 24.2 9.4 52 166-223 104-155 (291)
447 PF02607 B12-binding_2: B12 bi 36.4 54 0.0012 21.6 3.3 39 370-408 12-50 (79)
448 PRK09857 putative transposase; 35.5 2.6E+02 0.0057 24.4 8.1 66 321-393 209-274 (292)
449 PF01475 FUR: Ferric uptake re 35.0 1.4E+02 0.003 21.7 5.5 31 131-161 13-43 (120)
450 COG4259 Uncharacterized protei 34.9 1.6E+02 0.0036 20.7 6.3 45 179-223 56-100 (121)
451 PRK14956 DNA polymerase III su 34.3 4.2E+02 0.0091 25.2 13.1 38 159-196 247-284 (484)
452 KOG1258 mRNA processing protei 34.0 4.5E+02 0.0097 25.5 26.6 279 68-412 93-493 (577)
453 KOG0991 Replication factor C, 33.9 2.9E+02 0.0063 23.3 10.1 100 102-205 171-282 (333)
454 PF09670 Cas_Cas02710: CRISPR- 33.7 3.8E+02 0.0082 24.6 11.1 57 97-154 138-198 (379)
455 PF04190 DUF410: Protein of un 32.6 3.2E+02 0.0069 23.4 13.8 82 194-312 89-170 (260)
456 PRK09462 fur ferric uptake reg 32.5 2.3E+02 0.0049 21.7 8.1 20 141-160 33-52 (148)
457 PRK11639 zinc uptake transcrip 32.5 2.5E+02 0.0054 22.1 7.5 51 93-143 28-78 (169)
458 COG0790 FOG: TPR repeat, SEL1 32.4 3.3E+02 0.0071 23.5 19.0 152 63-225 86-267 (292)
459 KOG3364 Membrane protein invol 32.2 2.3E+02 0.0049 21.5 8.6 68 317-387 31-99 (149)
460 KOG1464 COP9 signalosome, subu 31.1 3.5E+02 0.0075 23.3 16.1 139 87-225 23-175 (440)
461 KOG1839 Uncharacterized protei 30.7 7.2E+02 0.016 26.9 11.3 146 71-217 955-1121(1236)
462 PRK08691 DNA polymerase III su 30.6 5E+02 0.011 26.1 9.7 88 300-396 182-282 (709)
463 KOG2034 Vacuolar sorting prote 30.6 6.2E+02 0.013 26.1 19.5 178 165-355 509-698 (911)
464 KOG1114 Tripeptidyl peptidase 30.2 6.6E+02 0.014 26.3 13.6 162 71-249 1092-1280(1304)
465 PF14669 Asp_Glu_race_2: Putat 29.9 3.1E+02 0.0066 22.3 15.2 56 323-384 137-206 (233)
466 PRK09687 putative lyase; Provi 29.5 3.8E+02 0.0082 23.3 25.7 140 71-223 53-202 (280)
467 COG2405 Predicted nucleic acid 29.4 1.1E+02 0.0024 23.0 4.0 44 360-404 111-154 (157)
468 PF08870 DUF1832: Domain of un 29.1 2E+02 0.0044 20.8 5.3 35 174-209 62-96 (113)
469 KOG0376 Serine-threonine phosp 28.9 1.4E+02 0.003 27.9 5.3 104 63-172 13-117 (476)
470 COG5159 RPN6 26S proteasome re 28.8 4E+02 0.0086 23.3 11.1 33 201-239 9-41 (421)
471 PF10255 Paf67: RNA polymerase 28.3 4.8E+02 0.01 24.1 9.4 27 197-223 124-150 (404)
472 KOG4642 Chaperone-dependent E3 28.3 3.7E+02 0.0081 22.8 10.7 120 100-222 20-144 (284)
473 PRK14958 DNA polymerase III su 28.2 5.5E+02 0.012 24.7 10.9 92 300-400 182-286 (509)
474 KOG0414 Chromosome condensatio 27.4 8E+02 0.017 26.3 16.1 36 206-247 568-603 (1251)
475 PRK14951 DNA polymerase III su 27.3 6E+02 0.013 25.2 9.6 35 358-393 250-284 (618)
476 smart00804 TAP_C C-terminal do 27.1 67 0.0015 20.4 2.3 16 210-225 40-55 (63)
477 COG0819 TenA Putative transcri 26.9 3.5E+02 0.0076 22.5 7.0 105 307-411 98-207 (218)
478 KOG4521 Nuclear pore complex, 26.8 8.2E+02 0.018 26.3 13.5 155 63-219 929-1126(1480)
479 PF10255 Paf67: RNA polymerase 26.8 3.1E+02 0.0067 25.3 7.2 92 289-386 81-191 (404)
480 PF14561 TPR_20: Tetratricopep 26.2 2.2E+02 0.0048 19.5 8.6 59 80-140 14-73 (90)
481 KOG0376 Serine-threonine phosp 26.2 1.8E+02 0.0038 27.3 5.5 100 295-406 16-117 (476)
482 KOG2223 Uncharacterized conser 26.1 4.4E+02 0.0096 24.5 7.7 113 181-330 460-572 (586)
483 PF02607 B12-binding_2: B12 bi 25.7 1.8E+02 0.0039 19.0 4.4 33 138-170 14-46 (79)
484 KOG1308 Hsp70-interacting prot 25.7 67 0.0014 28.5 2.7 94 100-196 124-218 (377)
485 PF10155 DUF2363: Uncharacteri 25.4 2.9E+02 0.0063 20.6 12.6 111 68-186 3-124 (126)
486 PF08542 Rep_fac_C: Replicatio 25.2 1.3E+02 0.0029 20.3 3.8 49 357-407 3-51 (89)
487 PF02631 RecX: RecX family; I 24.7 2.8E+02 0.0061 20.2 9.5 97 299-408 8-106 (121)
488 PF11123 DNA_Packaging_2: DNA 24.6 2.1E+02 0.0046 18.8 4.8 33 140-173 12-44 (82)
489 PRK14956 DNA polymerase III su 24.4 6.3E+02 0.014 24.1 11.0 100 178-319 184-284 (484)
490 PF11768 DUF3312: Protein of u 24.0 6.6E+02 0.014 24.3 10.6 64 93-158 411-477 (545)
491 PF12968 DUF3856: Domain of Un 23.8 3.1E+02 0.0067 20.3 9.1 68 317-385 54-126 (144)
492 COG4003 Uncharacterized protei 23.5 2.4E+02 0.0052 19.0 5.4 25 166-190 37-61 (98)
493 PF07304 SRA1: Steroid recepto 23.4 1.4E+02 0.0031 23.2 4.0 20 135-154 100-119 (157)
494 COG5187 RPN7 26S proteasome re 23.3 5.1E+02 0.011 22.7 16.1 100 123-224 113-221 (412)
495 PF04762 IKI3: IKI3 family; I 23.2 6.5E+02 0.014 26.5 9.5 30 283-312 812-843 (928)
496 PF09986 DUF2225: Uncharacteri 23.0 4.4E+02 0.0094 21.8 10.8 98 296-393 90-199 (214)
497 COG2812 DnaX DNA polymerase II 23.0 6.7E+02 0.015 24.2 8.8 91 66-161 176-281 (515)
498 PRK14700 recombination factor 23.0 5.2E+02 0.011 22.7 15.2 67 126-192 124-198 (300)
499 PRK07003 DNA polymerase III su 22.9 8.4E+02 0.018 25.1 14.6 88 69-159 179-279 (830)
500 KOG0508 Ankyrin repeat protein 22.8 37 0.0008 31.3 0.7 273 97-402 88-384 (615)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.8e-55 Score=424.40 Aligned_cols=322 Identities=17% Similarity=0.267 Sum_probs=217.1
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 043191 64 DITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143 (414)
Q Consensus 64 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 143 (414)
+++.|+++.|.++|+.|.+.+. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl-~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGL-KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3455666666666666666655 566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043191 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV--FGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 221 (414)
|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666654 455666666666666666666666666666666
Q ss_pred HcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh--ccccccHHHHHHHHHhcCC
Q 043191 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV--QCLCLNFLCLIDGLCKISK 298 (414)
Q Consensus 222 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~--~~~~~~~~~li~~~~~~~~ 298 (414)
.+.+ +.|+..+|+.+|.+|++. |++++|..+|. |... .||..+|+++|++|++.|+
T Consensus 606 ~e~g------i~p~~~tynsLI~ay~k~---------------G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 606 HEYN------IKGTPEVYTIAVNSCSQK---------------GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHcC------CCCChHHHHHHHHHHHhc---------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 6665 566666666666666654 66777777776 5544 6677777777777777777
Q ss_pred hhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043191 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378 (414)
Q Consensus 299 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 378 (414)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+ +|++|.+.|+.||..+|+.||.+|++.|++++|
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~------lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE------LYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH------HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 77777777777777777777777777777777777777666 777777777777777777777777777777777
Q ss_pred HHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 379 FVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 379 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
.++|++|.+.|+.||..||+.+|.+|++.|++++|
T Consensus 739 lelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A 773 (1060)
T PLN03218 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 77777777777777777777777777777776654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.3e-54 Score=417.94 Aligned_cols=322 Identities=16% Similarity=0.291 Sum_probs=292.9
Q ss_pred CCCCCHHhHHHHHHHHHhcCCC-------------------------------CCCHhhHHHHHHHHHhcCChhHHHHHH
Q 043191 65 ITSITPNEALCVFDYMLNMRPS-------------------------------RPPVTSFNILFGCLAKTKHYDTVLSLF 113 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~-------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~ 113 (414)
++.|++++|+++|++|...+.. .||..+|+.+|.+|++.|++++|.++|
T Consensus 381 ~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf 460 (1060)
T PLN03218 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVL 460 (1060)
T ss_pred HHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4567888888888888776642 267788888899999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043191 114 KRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193 (414)
Q Consensus 114 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 193 (414)
++|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 461 ~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 461 RLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 99998888899999999999999999999999999999888888899999999999999999999999999998888889
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHc--CCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHh
Q 043191 194 DVFTYNTLINGLCRTGHTIVALNLFEEMAN--GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271 (414)
Q Consensus 194 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 271 (414)
|..+|+.||.+|++.|++++|.++|++|.. .+ +.||..+|+++|.+|++. |++++|.
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g------i~PD~vTynaLI~ay~k~---------------G~ldeA~ 599 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHP------IDPDHITVGALMKACANA---------------GQVDRAK 599 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC------CCCcHHHHHHHHHHHHHC---------------CCHHHHH
Confidence 999999999999999999999999999875 45 788889999999988885 7899999
Q ss_pred hhhh-hhhh--ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHH
Q 043191 272 FYFP-LVRV--QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348 (414)
Q Consensus 272 ~~~~-~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~ 348 (414)
++++ |... .|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+ +++
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~------l~~ 673 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE------ILQ 673 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH------HHH
Confidence 9999 6665 789999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 349 RLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 349 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
+|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.9e-50 Score=386.63 Aligned_cols=325 Identities=18% Similarity=0.294 Sum_probs=277.7
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcc
Q 043191 63 GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 142 (414)
.+.+.|++++|.++|+.|. .||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 3457777777777777773 46777788888888888888888888888877777777777777777777777777
Q ss_pred hHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043191 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222 (414)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 222 (414)
.+.+++..+.+.|+.||..+||+||.+|+++|++++|.++|++|. .+|.++||+||.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 777777777778888888889999999999999999999999996 5799999999999999999999999999999
Q ss_pred cCCCCCCccccCchhhHHHHHHHHHhhcCCC----------------chhHHHHHh----hccchhhHhhhhh-hhhhcc
Q 043191 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSA----------------NFLGFSCMA----SFSALNKMAFYFP-LVRVQC 281 (414)
Q Consensus 223 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~----------------~~~~~~~~~----~~~~~~~a~~~~~-~~~~~~ 281 (414)
+.| +.||..||+.++.+|++.|... +...++.++ +.|++++|.++|+ +. .+
T Consensus 318 ~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~ 389 (697)
T PLN03081 318 DSG------VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--RK 389 (697)
T ss_pred HcC------CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--CC
Confidence 988 9999999999999999887733 333333333 6789999999998 65 37
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh-CCCCCCHH
Q 043191 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS-TGLFPDLY 360 (414)
Q Consensus 282 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~-~~~~p~~~ 360 (414)
|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.+ +|+.|.+ .|+.|+..
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~------~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE------IFQSMSENHRIKPRAM 463 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHH------HHHHHHHhcCCCCCcc
Confidence 8899999999999999999999999999999999999999999999999999888888 9999976 68999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 361 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|..+|+++.|
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999999999999998876 4789999999999999999988765
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.1e-50 Score=387.76 Aligned_cols=337 Identities=18% Similarity=0.277 Sum_probs=244.4
Q ss_pred CCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043191 61 GEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140 (414)
Q Consensus 61 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 140 (414)
+.++.+.|++++|+++|++|...++..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++.+|++.|+
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~ 173 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM 173 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCC
Confidence 34556789999999999999887655789999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043191 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220 (414)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 220 (414)
++.|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..
T Consensus 174 ~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~ 249 (697)
T PLN03081 174 LIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249 (697)
T ss_pred HHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999999985 4788999999999999999999999999998888777777666655555555555555555555
Q ss_pred HHcCCCCCCccccCchhhHHHHHHHHHhhcC------------CCchhHHHHHh----hccchhhHhhhhh-hhhh--cc
Q 043191 221 MANGNGEFGVVCEPDAITYSTIIDGLCKEAG------------SANFLGFSCMA----SFSALNKMAFYFP-LVRV--QC 281 (414)
Q Consensus 221 m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~------------~~~~~~~~~~~----~~~~~~~a~~~~~-~~~~--~~ 281 (414)
+.+.| +.||..+|+.+|.+|++.|+ ..+..+++.++ ..|+.++|.++|. |... .|
T Consensus 250 ~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 250 VLKTG------VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHhC------CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 55554 45555555555555555444 22223333332 3444444444444 3222 44
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCC-------------------------------CHhhHHHHHHHHHh
Q 043191 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP-------------------------------NVVTYNILIRGLCN 330 (414)
Q Consensus 282 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-------------------------------~~~~~~~li~~~~~ 330 (414)
|..+|++++.+|++.|++++|.+++++|.+.|+.| |..+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 44444444444444444444444444444444444 55555555555555
Q ss_pred cCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh-CCCCCCHHHHHHHHHHHHHcCC
Q 043191 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP-SCFTPDAVTFTSLIKILEINSF 409 (414)
Q Consensus 331 ~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~ 409 (414)
.|+.++|.+ +|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.|+..+|++++++|++.|+
T Consensus 404 ~G~~~~A~~------lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~ 477 (697)
T PLN03081 404 HGRGTKAVE------MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL 477 (697)
T ss_pred cCCHHHHHH------HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence 555555555 999999999999999999999999999999999999999976 4888999999999999999998
Q ss_pred cccc
Q 043191 410 FRQV 413 (414)
Q Consensus 410 ~~~a 413 (414)
+++|
T Consensus 478 ~~eA 481 (697)
T PLN03081 478 LDEA 481 (697)
T ss_pred HHHH
Confidence 8887
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-48 Score=386.02 Aligned_cols=337 Identities=20% Similarity=0.249 Sum_probs=295.4
Q ss_pred cCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043191 60 SGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139 (414)
Q Consensus 60 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 139 (414)
.+..+.++|++++|.++|+.|. .+|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 3455678899999999999994 58889999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043191 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 219 (414)
+.+.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 5799999999999999999999999999
Q ss_pred HHHcCCCCCCccccCchhhHHHHHHHHHhhcC----------------CCchhHHHHHh----hccchhhHhhhhh-hhh
Q 043191 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAG----------------SANFLGFSCMA----SFSALNKMAFYFP-LVR 278 (414)
Q Consensus 220 ~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~----------------~~~~~~~~~~~----~~~~~~~a~~~~~-~~~ 278 (414)
+|.+.| +.||..||+.++.+|++.|+ .++...++.++ +.|++++|.++|+ +.
T Consensus 379 ~M~~~g------~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~- 451 (857)
T PLN03077 379 LMEQDN------VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP- 451 (857)
T ss_pred HHHHhC------CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-
Confidence 999998 99999999999999998877 33333444443 7789999999998 65
Q ss_pred hccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHH-----------------------------
Q 043191 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC----------------------------- 329 (414)
Q Consensus 279 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----------------------------- 329 (414)
.++..+|+++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|+
T Consensus 452 -~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 452 -EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred -CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 36788999999999999999999999999875 47788887776665554
Q ss_pred ------hcCChhhhhh------------------------hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043191 330 ------NDGQMDETKH------------------------YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGF 379 (414)
Q Consensus 330 ------~~g~~~~a~~------------------------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 379 (414)
+.|++++|.. .++|+++|++|.+.|+.||..||+.++.+|++.|++++|.
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 4555555433 3778889999999999999999999999999999999999
Q ss_pred HHHHhhh-hCCCCCCHHHHHHHHHHHHHcCCccccC
Q 043191 380 VIFGRIL-PSCFTPDAVTFTSLIKILEINSFFRQVA 414 (414)
Q Consensus 380 ~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~a~ 414 (414)
++|++|. +.|+.|+..+|++++++|++.|++++|.
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 9999998 6689999999999999999999988873
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-48 Score=384.53 Aligned_cols=337 Identities=16% Similarity=0.224 Sum_probs=293.2
Q ss_pred hhcCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 043191 58 KSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK 137 (414)
Q Consensus 58 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 137 (414)
...+.++.+.|++++|+++|+.|...+. .||..+|+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~-~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSV-DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 3344567789999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043191 138 MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217 (414)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 217 (414)
.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++
T Consensus 336 ~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 336 LGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred cCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 999999999999985 5788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCccccCchhhHHHHHHHHHhhcC------------CCchhHHHHHh----hccchhhHhhhhh-hhhh-
Q 043191 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG------------SANFLGFSCMA----SFSALNKMAFYFP-LVRV- 279 (414)
Q Consensus 218 ~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~------------~~~~~~~~~~~----~~~~~~~a~~~~~-~~~~- 279 (414)
++.|.+.| +.|+..+|+.+|.+|++.|+ .++..+++.++ ..+..++|..+|+ |...
T Consensus 412 ~~~~~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~ 485 (857)
T PLN03077 412 HELAERKG------LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485 (857)
T ss_pred HHHHHHhC------CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 99999998 89999999999999999887 33444444444 6677778888887 5433
Q ss_pred ccccccHH-----------------------------------HHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHH
Q 043191 280 QCLCLNFL-----------------------------------CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324 (414)
Q Consensus 280 ~~~~~~~~-----------------------------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 324 (414)
.||..+|+ +||++|+++|++++|.++|++| .||..+||++
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~l 560 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNIL 560 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHH
Confidence 56655555 4556666666677777776665 4688888888
Q ss_pred HHHHHhcCChhhhhh-----------------------------hhhHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCC
Q 043191 325 IRGLCNDGQMDETKH-----------------------------YETVFLLFKRLN-STGLFPDLYTYNILINCFCKIGR 374 (414)
Q Consensus 325 i~~~~~~g~~~~a~~-----------------------------~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~ 374 (414)
|.+|++.|+.++|.+ +++++++|+.|. +.|+.|+..+|+.++.+|++.|+
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 888888888888877 488888999999 68999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 375 VSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 375 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
+++|.+++++|. ++||..+|++|+.+|..+|+.+.+
T Consensus 641 ~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 641 LTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHH
Confidence 999999999994 789999999999999999988754
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.8e-21 Score=176.32 Aligned_cols=296 Identities=12% Similarity=0.086 Sum_probs=243.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCCc
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD---RYTYNILINCFCKMGRV 141 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~ 141 (414)
...|++++|+..|+.+...++ .+..++..+...+.+.|++++|..+++.+...+..++ ..++..+...|.+.|++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 356899999999999999876 6778899999999999999999999999987643222 25678889999999999
Q ss_pred chHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHH
Q 043191 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD----VFTYNTLINGLCRTGHTIVALNL 217 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~ 217 (414)
+.|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999998764 55778999999999999999999999999987653322 22456778888999999999999
Q ss_pred HHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhccc--cccHHHHHHHHH
Q 043191 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQCL--CLNFLCLIDGLC 294 (414)
Q Consensus 218 ~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~--~~~~~~li~~~~ 294 (414)
|+++.+.. +.+...+..+...+.. .|+.++|...+. +....|+ ..+++.++.+|.
T Consensus 203 ~~~al~~~-------p~~~~~~~~la~~~~~---------------~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 203 LKKALAAD-------PQCVRASILLGDLALA---------------QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHhHC-------cCCHHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 99998743 2234455666666665 478889999888 6655443 356788999999
Q ss_pred hcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 043191 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK--- 371 (414)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--- 371 (414)
..|++++|...++++.+. .|+...+..+...+.+.|++++|.. +++++.+. .|+..++..++..+..
T Consensus 261 ~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~------~l~~~l~~--~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQA------LLREQLRR--HPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHH------HHHHHHHh--CcCHHHHHHHHHHhhhccC
Confidence 999999999999999876 3566677889999999999999988 99988876 6899999988888775
Q ss_pred cCCHHHHHHHHHhhhhCCCCCCHH
Q 043191 372 IGRVSSGFVIFGRILPSCFTPDAV 395 (414)
Q Consensus 372 ~g~~~~a~~~~~~m~~~g~~p~~~ 395 (414)
.|+.+++..++++|.+.++.|++.
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCC
Confidence 568999999999999987777665
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=2.9e-20 Score=188.10 Aligned_cols=328 Identities=9% Similarity=0.001 Sum_probs=247.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
.+.|+.++|...|+.+...++ .+...+..++..+.+.|++++|..+++.+.+.. +.+..+|..+..++...|++++|
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELNP--QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCc--cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 456788888888888877665 566677778888888888888888888876542 34667777788888888888888
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
...|+.+.+.. +.+...+..+..++.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|.++++.+.+.
T Consensus 621 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 621 VSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888877654 4456677777778888888888888888777653 345677777777788888888888888877765
Q ss_pred CCCCCccccCchhhHHHHHHHHHhhcCCCchhHH------------------HHHhhccchhhHhhhhh-hhhh-ccccc
Q 043191 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF------------------SCMASFSALNKMAFYFP-LVRV-QCLCL 284 (414)
Q Consensus 225 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~------------------~~~~~~~~~~~a~~~~~-~~~~-~~~~~ 284 (414)
. ..+...+..+...+...|+...+... ......|+.++|...+. .... +.+..
T Consensus 699 ~-------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 771 (899)
T TIGR02917 699 H-------PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV 771 (899)
T ss_pred C-------cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 4 34455566666666665552222111 11125678888888888 5444 55677
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHH
Q 043191 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364 (414)
Q Consensus 285 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~ 364 (414)
.++.+...|.+.|++++|..+|+++.+... .+...++.+...+...|+ .+|.. +++++.+.. +-+..++..
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~------~~~~~~~~~-~~~~~~~~~ 842 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALE------YAEKALKLA-PNIPAILDT 842 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHH------HHHHHHhhC-CCCcHHHHH
Confidence 888888999999999999999999987754 377888999999999999 77888 888887753 225667788
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCccccC
Q 043191 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414 (414)
Q Consensus 365 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 414 (414)
+...+...|++++|..+++++++.+.. +..++..+..++.+.|++++|.
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 888999999999999999999997644 8999999999999999999873
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=2.5e-19 Score=181.26 Aligned_cols=327 Identities=11% Similarity=0.037 Sum_probs=219.9
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
.+.|++++|+++++.+....+ .+..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQP--DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCC--CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 355667777777777666554 556677777777777777777777777776542 22445566677777777777777
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
.+.++.+.+.+ +.+..++..+...+.+.|+.++|..+++++...+ +.+...+..+...|.+.|++++|..+++.+.+.
T Consensus 519 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 519 IQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 77777777654 4466677777777777777777777777776654 345566667777777777777777777777654
Q ss_pred CCCCCccccCchhhHHHHHHHHHhhcCCCchhHH---------------H----HHhhccchhhHhhhhh-hhhh-cccc
Q 043191 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF---------------S----CMASFSALNKMAFYFP-LVRV-QCLC 283 (414)
Q Consensus 225 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~---------------~----~~~~~~~~~~a~~~~~-~~~~-~~~~ 283 (414)
. +.+...|..+...+...|+...+... . .....++.++|...+. .... +.+.
T Consensus 597 ~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 669 (899)
T TIGR02917 597 A-------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT 669 (899)
T ss_pred C-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 3 34556677777777666552222111 0 0114566777777776 4444 3345
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHH
Q 043191 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363 (414)
Q Consensus 284 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~ 363 (414)
..+..+...+...|++++|..+++.+.+.+. .+...+..+...+...|++++|.. .++.+...+ |+..++.
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~------~~~~~~~~~--~~~~~~~ 740 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQ------AYRKALKRA--PSSQNAI 740 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHH------HHHHHHhhC--CCchHHH
Confidence 6677777777777777777777777766543 355666667777777777777777 777777653 4446666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 364 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
.+..++.+.|++++|.+.++++.+.. ..+...+..+...|.+.|++++|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A 789 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKA 789 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 77777788888888888888777653 34667777778888888887765
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=3.5e-19 Score=162.53 Aligned_cols=284 Identities=12% Similarity=0.040 Sum_probs=228.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC---HHhHHHHHHHHHh
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD---AVTFTSLIKDLCA 172 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 172 (414)
....+...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999863 23566889999999999999999999999987642222 2567888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCch----hhHHHHHHHHHh
Q 043191 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA----ITYSTIIDGLCK 248 (414)
Q Consensus 173 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~----~~~~~li~~~~~ 248 (414)
.|++++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+ ..+.. ..+..+...+.
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~la~~~~- 191 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG------GDSLRVEIAHFYCELAQQAL- 191 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHHHH-
Confidence 999999999999998753 4567899999999999999999999999998755 12211 12233333333
Q ss_pred hcCCCchhHHHHHhhccchhhHhhhhh-hhhhcc-ccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHH
Q 043191 249 EAGSANFLGFSCMASFSALNKMAFYFP-LVRVQC-LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326 (414)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 326 (414)
..++.++|...+. .....| +...+..+...+.+.|++++|.++|+++.+.+......+++.++.
T Consensus 192 --------------~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 257 (389)
T PRK11788 192 --------------ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLME 257 (389)
T ss_pred --------------hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHH
Confidence 3588999999988 655544 455777888999999999999999999987644333567889999
Q ss_pred HHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHH
Q 043191 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406 (414)
Q Consensus 327 ~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 406 (414)
+|...|++++|.. .++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+..
T Consensus 258 ~~~~~g~~~~A~~------~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~ 327 (389)
T PRK11788 258 CYQALGDEAEGLE------FLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLA 327 (389)
T ss_pred HHHHcCCHHHHHH------HHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhh
Confidence 9999999999988 99999876 467777788999999999999999999999885 7999999999988775
Q ss_pred ---cCCccc
Q 043191 407 ---NSFFRQ 412 (414)
Q Consensus 407 ---~g~~~~ 412 (414)
.|+.++
T Consensus 328 ~~~~g~~~~ 336 (389)
T PRK11788 328 EAEEGRAKE 336 (389)
T ss_pred ccCCccchh
Confidence 345544
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.2e-16 Score=153.26 Aligned_cols=311 Identities=9% Similarity=-0.034 Sum_probs=190.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcch
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSH 143 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~ 143 (414)
.+.|++++|+.+++......+ .+...+..++.+....|++++|...|+++... .| +...+..+...+...|++++
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HhcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHH
Confidence 466888888888888887776 34445555666667788888888888887765 33 45667777777888888888
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
|...+++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+.+.|++++|...++.+.+
T Consensus 129 Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 129 VADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 888888887763 4456677778888888888888888888776553 2223333333 346777888888888888766
Q ss_pred CCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhH
Q 043191 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKI 301 (414)
Q Consensus 224 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~ 301 (414)
.. ..++...+..+..++.. .|+.++|...+. .... +.+...+..+...+...|++++
T Consensus 206 ~~------~~~~~~~~~~l~~~l~~---------------~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 206 FF------ALERQESAGLAVDTLCA---------------VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred cC------CCcchhHHHHHHHHHHH---------------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchh
Confidence 43 12222333333334433 355566666665 3333 2334445556666666666654
Q ss_pred ----HHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043191 302 ----ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377 (414)
Q Consensus 302 ----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 377 (414)
|...|++..+.... +...+..+...+...|++++|.. .+++..+... -+...+..+...+...|++++
T Consensus 265 A~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~------~l~~al~l~P-~~~~a~~~La~~l~~~G~~~e 336 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIP------LLQQSLATHP-DLPYVRAMYARALRQVGQYTA 336 (656)
T ss_pred hHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHH
Confidence 56666666554322 44556666666666666666666 6666555421 134445555566666666666
Q ss_pred HHHHHHhhhhCCCCCCHH-HHHHHHHHHHHcCCcccc
Q 043191 378 GFVIFGRILPSCFTPDAV-TFTSLIKILEINSFFRQV 413 (414)
Q Consensus 378 a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a 413 (414)
|...++++.+. .|+.. .+..+..++...|++++|
T Consensus 337 A~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 337 ASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHH
Confidence 66666666653 33332 223334556666666554
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=1.6e-15 Score=145.52 Aligned_cols=287 Identities=15% Similarity=0.113 Sum_probs=228.3
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcch
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSH 143 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~ 143 (414)
+..|++++|++.|+.+....| .+...+..+...+.+.|++++|...|+++.+. .| +...+..+..++...|++++
T Consensus 87 l~~g~~~~A~~~l~~~l~~~P--~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVNV--CQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHH
Confidence 568999999999999999887 67778999999999999999999999999875 34 56778889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
|...++.+.... +.+...+..+ ..+.+.|++++|...++.+....-.++...+..+..++.+.|++++|...+++...
T Consensus 163 A~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 163 AISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999887764 2334444333 34788999999999999987764334455556667889999999999999999997
Q ss_pred CCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchh----hHhhhhh-hhhh-ccccccHHHHHHHHHhcC
Q 043191 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN----KMAFYFP-LVRV-QCLCLNFLCLIDGLCKIS 297 (414)
Q Consensus 224 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~----~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~ 297 (414)
.. +.+...+..+...+... |+.+ +|...++ .... +.+...+..+...+.+.|
T Consensus 241 ~~-------p~~~~~~~~Lg~~l~~~---------------G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 241 RG-------LDGAALRRSLGLAYYQS---------------GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG 298 (656)
T ss_pred cC-------CCCHHHHHHHHHHHHHc---------------CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence 54 23455566666666665 4444 3677777 5555 444677889999999999
Q ss_pred ChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHH
Q 043191 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL-YTYNILINCFCKIGRVS 376 (414)
Q Consensus 298 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~ 376 (414)
++++|...+++....... +...+..+..++.+.|++++|.. .++.+.+. .|+. ..+..+..++...|+.+
T Consensus 299 ~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~------~l~~al~~--~P~~~~~~~~~a~al~~~G~~d 369 (656)
T PRK15174 299 QNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASD------EFVQLARE--KGVTSKWNRYAAAALLQAGKTS 369 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHh--CccchHHHHHHHHHHHHCCCHH
Confidence 999999999999876443 46677788899999999999988 99988875 3444 33444567789999999
Q ss_pred HHHHHHHhhhhC
Q 043191 377 SGFVIFGRILPS 388 (414)
Q Consensus 377 ~a~~~~~~m~~~ 388 (414)
+|...|++..+.
T Consensus 370 eA~~~l~~al~~ 381 (656)
T PRK15174 370 EAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=5.8e-15 Score=141.99 Aligned_cols=332 Identities=12% Similarity=0.058 Sum_probs=225.4
Q ss_pred CCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcC
Q 043191 61 GEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMG 139 (414)
Q Consensus 61 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~ 139 (414)
...+.+.|++++|+..|+...... |+...|..+..+|.+.|++++|++.++...+. .| +...|..+..+|...|
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcC
Confidence 445567899999999999988764 55678889999999999999999999998876 34 5667888888999999
Q ss_pred CcchHHHHHHHHHHcCC----------------------------CCC-HHhHHHH------------------------
Q 043191 140 RVSHGFVVLGRILRSCF----------------------------TPD-AVTFTSL------------------------ 166 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~~~----------------------------~~~-~~~~~~l------------------------ 166 (414)
++++|+.-|......+- .|. ...+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 99888765543322110 000 0000000
Q ss_pred ------HHHH------HhcCCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccc
Q 043191 167 ------IKDL------CAESRIMEAAALFTKLRVFG-C-ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232 (414)
Q Consensus 167 ------i~~~------~~~g~~~~a~~~~~~m~~~g-~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 232 (414)
+..+ ...+++++|.+.|++..+.+ . +.+...|+.+...+...|++++|...|++..+.
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-------- 360 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-------- 360 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------
Confidence 0000 11246777777777777653 1 223456666777777777777777777777663
Q ss_pred cCc-hhhHHHHHHHHHhhcCCCchhH---------------HH----HHhhccchhhHhhhhh-hhhhcc-ccccHHHHH
Q 043191 233 EPD-AITYSTIIDGLCKEAGSANFLG---------------FS----CMASFSALNKMAFYFP-LVRVQC-LCLNFLCLI 290 (414)
Q Consensus 233 ~p~-~~~~~~li~~~~~~~~~~~~~~---------------~~----~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~li 290 (414)
.|+ ...|..+...+...|+...+.. +. .....|++++|...+. .....| +...+..+.
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 343 3355555555555444211111 11 1126788999999998 555544 466677788
Q ss_pred HHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHH------HHHH
Q 043191 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY------TYNI 364 (414)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~------~~~~ 364 (414)
.++.+.|++++|+..|++..+... -+...|+.+...+...|++++|.. .|++..+..-..+.. .++.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~------~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIE------KFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHH------HHHHHHhcCCccccccccHHHHHHH
Confidence 899999999999999999877532 257788889999999999999988 888887753211111 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 365 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
.+..+...|++++|.+++++.++.. .-+...+..+...+.+.|++++|
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 2233445799999999999988754 22446788999999999999887
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=1.9e-14 Score=147.49 Aligned_cols=327 Identities=12% Similarity=0.065 Sum_probs=203.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHhhHH------------HH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF-PDRYTYN------------IL 131 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~------------~l 131 (414)
...|++++|+..|+...+..| .+..++..+..++.+.|++++|+..|++..+..-. ++...+. ..
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 456888888888888888765 57778888888888888888888888887754211 1111111 11
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-----------
Q 043191 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT----------- 200 (414)
Q Consensus 132 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~----------- 200 (414)
...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|++.|++..+.. +.+...+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHH
Confidence 234455666666666666666553 3344455555566666666666666666655432 111111111
Q ss_pred -------------------------------HHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCc-hhhHHHHHHHHHh
Q 043191 201 -------------------------------LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD-AITYSTIIDGLCK 248 (414)
Q Consensus 201 -------------------------------li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~-~~~~~~li~~~~~ 248 (414)
+...+...|++++|.+.|++..+. .|+ ...+..+...|..
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Confidence 112233445555555555555542 222 2223333333333
Q ss_pred hcC----------------------------------CCchhH-----------------------------HHHHhhcc
Q 043191 249 EAG----------------------------------SANFLG-----------------------------FSCMASFS 265 (414)
Q Consensus 249 ~~~----------------------------------~~~~~~-----------------------------~~~~~~~~ 265 (414)
.|+ ...+.. ...+...|
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 333 000000 01112345
Q ss_pred chhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHH
Q 043191 266 ALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345 (414)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~ 345 (414)
+.++|..+++ ..+.+...+..+...+.+.|++++|+..|++..+.... +...+..+...+...|++++|..
T Consensus 588 ~~~eA~~~l~--~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~------ 658 (1157)
T PRK11447 588 KEAEAEALLR--QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARA------ 658 (1157)
T ss_pred CHHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH------
Confidence 5555555544 12345556777888899999999999999998886443 67888899999999999999988
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCC--CC---CHHHHHHHHHHHHHcCCcccc
Q 043191 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF--TP---DAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 346 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p---~~~~~~~li~~~~~~g~~~~a 413 (414)
.++...+.. ..+...+..+..++...|++++|.+++++++...- .| +...+..+...+...|++++|
T Consensus 659 ~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 659 QLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred HHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 888777542 12456677788888999999999999999987532 12 235677778888889988876
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=2.4e-14 Score=121.69 Aligned_cols=297 Identities=13% Similarity=0.156 Sum_probs=194.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHH
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (414)
+.+..+|..||.++++--..+.|.+++++......+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 4667899999999999999999999999998887788999999999875432 338899999999999999999999
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHcC--CCCCCccccCchhhH
Q 043191 167 IKDLCAESRIME----AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV-ALNLFEEMANG--NGEFGVVCEPDAITY 239 (414)
Q Consensus 167 i~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~--~~~~~~~~~p~~~~~ 239 (414)
+.+..+.|+++. |.+++.+|++.|++|...+|..+|..+++.++..+ |..++.++... |.......+-|...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998775 56788999999999999999999999999988754 55555555542 222222122345667
Q ss_pred HHHHHHHHhhcCCCchhHHHHHh---------------------------hccchhhHhhhhh-hhhh--ccccccHHHH
Q 043191 240 STIIDGLCKEAGSANFLGFSCMA---------------------------SFSALNKMAFYFP-LVRV--QCLCLNFLCL 289 (414)
Q Consensus 240 ~~li~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~a~~~~~-~~~~--~~~~~~~~~l 289 (414)
...+..|.+..+..-+.....++ .....+.....+. +... -|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 77777777654422222111111 2233334444444 3322 4455555556
Q ss_pred HHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcC-Chhhh--hh----hhh-HHHHH-------HHHHhCC
Q 043191 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG-QMDET--KH----YET-VFLLF-------KRLNSTG 354 (414)
Q Consensus 290 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a--~~----~~~-a~~~~-------~~m~~~~ 354 (414)
+++..-.|.++-.-++|..+...|..-+...-..++.-+++.. ....- .+ +.+ |..++ .+|. .
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r--~ 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR--A 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH--h
Confidence 6666666666666666666666654444444444444444433 11000 00 000 11111 1122 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 043191 355 LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389 (414)
Q Consensus 355 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 389 (414)
........+...-.+.+.|+.++|.++|..+.+.|
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 23344555666667789999999999999886654
No 16
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=5.6e-13 Score=128.88 Aligned_cols=328 Identities=9% Similarity=0.000 Sum_probs=227.6
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
+.|+++.|++.|+...+..| .-....+ .++..+...|+.++|+..+++.... ..........+...+...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P-~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGP-LQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCc-cchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 66888999999999988776 2212233 7788888889999999999888721 1112233333356788889999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
++|+++.+.. +-+...+..++..+.+.++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999998875 445677778888889999999999999988766 5666666445444444566666889999888754
Q ss_pred CCCCccccCchhhHHHHHHHHHhhcC------------------------------------------------------
Q 043191 226 GEFGVVCEPDAITYSTIIDGLCKEAG------------------------------------------------------ 251 (414)
Q Consensus 226 ~~~~~~~~p~~~~~~~li~~~~~~~~------------------------------------------------------ 251 (414)
+-+...+..++.+..+.|-
T Consensus 200 -------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 200 -------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred -------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 1123333444444444333
Q ss_pred -----------CCch---------hHHHHHhhccchhhHhhhhh-hhhhc--cccccHHHHHHHHHhcCChhHHHHHHHh
Q 043191 252 -----------SANF---------LGFSCMASFSALNKMAFYFP-LVRVQ--CLCLNFLCLIDGLCKISKLKIARELFQS 308 (414)
Q Consensus 252 -----------~~~~---------~~~~~~~~~~~~~~a~~~~~-~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ 308 (414)
.+.. -.+..+...+++.++.+.++ +.... ....+-..+.++|...+++++|+.+|+.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 1110 01122226677777777777 44332 2334556788999999999999999999
Q ss_pred chhCC-----CCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCC-----------CCCH---HHHHHHHHHH
Q 043191 309 LPRAG-----LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL-----------FPDL---YTYNILINCF 369 (414)
Q Consensus 309 m~~~g-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~li~~~ 369 (414)
+.... ..++......|.-++...+++++|.. +++.+.+... .||. ..+..++..+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~------~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ------FAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH------HHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 86542 12344446788999999999999999 9999987311 1222 2344567778
Q ss_pred HhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 370 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
...|+..+|.+.++++.... .-|......+...+...|++.+|
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 89999999999999998763 33778888888888888888776
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.66 E-value=7.3e-13 Score=127.56 Aligned_cols=290 Identities=10% Similarity=0.005 Sum_probs=205.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043191 92 SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171 (414)
Q Consensus 92 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 171 (414)
.+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3556777889999999999999998865 6788889999999999999999999999999875 446778899999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH-----------------------------HHHHH---------------------
Q 043191 172 AESRIMEAAALFTKLRVFGCELDVF-----------------------------TYNTL--------------------- 201 (414)
Q Consensus 172 ~~g~~~~a~~~~~~m~~~g~~~~~~-----------------------------~~~~l--------------------- 201 (414)
..|++++|+.-|......+-..+.. .+..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999987665443221000000 00000
Q ss_pred ---------HHHH------HhcCChHHHHHHHHHHHcCCCCCCccccCch-hhHHHHHHHHHhhcCCCchhHHHHHhhcc
Q 043191 202 ---------INGL------CRTGHTIVALNLFEEMANGNGEFGVVCEPDA-ITYSTIIDGLCKEAGSANFLGFSCMASFS 265 (414)
Q Consensus 202 ---------i~~~------~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~~~~~~~~~~~~ 265 (414)
+... ...+++++|.+.|+...+.+. ..|+. ..+..+...+. ..|
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~---------------~~g 345 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKC---------------LKG 345 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHH---------------HcC
Confidence 0000 112467777788877776431 23332 23333333333 357
Q ss_pred chhhHhhhhh-hhhhccc-cccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhH
Q 043191 266 ALNKMAFYFP-LVRVQCL-CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETV 343 (414)
Q Consensus 266 ~~~~a~~~~~-~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a 343 (414)
++++|...+. .....|+ ...|..+...+...|++++|...|++..+.... +...|..+...+...|++++|..
T Consensus 346 ~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~---- 420 (615)
T TIGR00990 346 KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGK---- 420 (615)
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH----
Confidence 7888888888 5555444 556777888888888888888888888765432 56778888888888888888877
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 344 FLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 344 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
.|++..+.. +.+...+..+...+.+.|++++|+..|++.++. ..-+...|+.+...+...|++++|
T Consensus 421 --~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 421 --DYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred --HHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHH
Confidence 888877653 224566777777888888888888888888764 223467788888888888888776
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.65 E-value=5.3e-13 Score=136.97 Aligned_cols=305 Identities=12% Similarity=0.025 Sum_probs=203.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH----------
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC---------- 134 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~---------- 134 (414)
.+.|++++|++.|+.+....| .+...+..+...+...|++++|++.|++..+.. +.+...+..+...
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHH
Confidence 467899999999999999876 667788889999999999999999999988652 1233344333333
Q ss_pred --------------------------------HHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 043191 135 --------------------------------FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182 (414)
Q Consensus 135 --------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 182 (414)
+...|++++|.+.|++.++.. +-+...+..+...|.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334566666666666666553 22455556666666666777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhh---------HHHHHHHHHhhcCCC
Q 043191 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT---------YSTIIDGLCKEAGSA 253 (414)
Q Consensus 183 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~---------~~~li~~~~~~~~~~ 253 (414)
++++.+.. +.+...+..+...+...++.++|...++.+.... ..++... +..+...+...|+..
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~------~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ------WNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh------cChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 66665532 2233344444444555666666666666543321 1111111 112223333333311
Q ss_pred chhH-----------H----HHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCC
Q 043191 254 NFLG-----------F----SCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316 (414)
Q Consensus 254 ~~~~-----------~----~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 316 (414)
.+.. . ......|+.++|...++ .... +.+...+..++..|...|++++|++.++...+....
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~- 669 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND- 669 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-
Confidence 1111 1 11227899999999999 5555 556788999999999999999999999988765322
Q ss_pred CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF--P---DLYTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 317 ~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~--p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
+...+..+..++...|++++|.+ +++.+...... | +...+..+...+...|++++|+..|++.+.
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~------~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQR------TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHH------HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667778888999999999988 99998875321 2 234666677888999999999999998864
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.65 E-value=6.7e-14 Score=124.37 Aligned_cols=138 Identities=13% Similarity=0.124 Sum_probs=71.7
Q ss_pred hccchhhHhhhhh-hhhhccc-cccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhh
Q 043191 263 SFSALNKMAFYFP-LVRVQCL-CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340 (414)
Q Consensus 263 ~~~~~~~a~~~~~-~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 340 (414)
..|.++-|...++ .....|+ ...|+.|..++-..|++.+|.+.|.+....... .....+.|...|...|.+++|..
T Consensus 298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~- 375 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATR- 375 (966)
T ss_pred ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHH-
Confidence 4466666666666 4444444 556666666666666666666666665554221 34455556666666666666555
Q ss_pred hhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCH-HHHHHHHHHHHHcCCcc
Q 043191 341 ETVFLLFKRLNSTGLFPD-LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA-VTFTSLIKILEINSFFR 411 (414)
Q Consensus 341 ~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~ 411 (414)
+|....+- .|. ...++.|...|-..|++++|+..+++.++ +.|+. ..|+.+-..|-..|+..
T Consensus 376 -----ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 376 -----LYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred -----HHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHH
Confidence 44444432 222 22344444555555555555555555544 34432 34444444444444433
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.64 E-value=3e-12 Score=125.79 Aligned_cols=334 Identities=10% Similarity=0.026 Sum_probs=231.9
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
..|+.++|++++.......+ .+...+..+...+.+.|++++|.++|++..+.. +.+...+..+..++...|++++|.
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~--~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQ--LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34889999999999876443 566678999999999999999999999987652 235666778888899999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
..++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...|..++|++.++......
T Consensus 104 ~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p 180 (765)
T PRK10049 104 VKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTP 180 (765)
T ss_pred HHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCH
Confidence 9999998873 44566 8888889999999999999999998874 3356666778888888899998988887655310
Q ss_pred CCCCcccc--Cchh--------------hH---HH---HHHHHHhh-cCCCchh-H--------HHHHhhccchhhHhhh
Q 043191 226 GEFGVVCE--PDAI--------------TY---ST---IIDGLCKE-AGSANFL-G--------FSCMASFSALNKMAFY 273 (414)
Q Consensus 226 ~~~~~~~~--p~~~--------------~~---~~---li~~~~~~-~~~~~~~-~--------~~~~~~~~~~~~a~~~ 273 (414)
. ...... |... -+ .. .+..+... ...+... . ...+...++.++|...
T Consensus 181 ~-~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 181 A-EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred H-HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 0 000000 0000 00 00 01111111 1111110 1 1223466889999999
Q ss_pred hh-hhhhccccc--cHHHHHHHHHhcCChhHHHHHHHhchhCCCCC---CHhhHHHHHHHHHhcCChhhhhhhhhHHHHH
Q 043191 274 FP-LVRVQCLCL--NFLCLIDGLCKISKLKIARELFQSLPRAGLMP---NVVTYNILIRGLCNDGQMDETKHYETVFLLF 347 (414)
Q Consensus 274 ~~-~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~ 347 (414)
++ +....+... .-..+..+|...|++++|+.+|+++....... ....+..+..++...|++++|.. ++
T Consensus 260 ~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~------~l 333 (765)
T PRK10049 260 YQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT------VT 333 (765)
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH------HH
Confidence 99 555432211 12225778999999999999999987643221 13456667778899999999988 88
Q ss_pred HHHHhCC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 348 KRLNSTG-----------LFPD---LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 348 ~~m~~~~-----------~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
+.+.+.. -.|+ ...+..+...+...|+.++|+++++++.... .-+...+..+...+...|++++|
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 8887652 1223 2244566677888899999999999887752 33567788888888888887766
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.62 E-value=4.2e-12 Score=124.76 Aligned_cols=315 Identities=11% Similarity=0.005 Sum_probs=223.3
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
...|++++|.++|+......| .+...+..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|
T Consensus 60 ~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~A 135 (765)
T PRK10049 60 RNLKQWQNSLTLWQKALSLEP--QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDE 135 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHH
Confidence 466899999999999988876 667778888899999999999999999988762 23455 88888889999999999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH----------------------------------------
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT---------------------------------------- 184 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~---------------------------------------- 184 (414)
+..++++.+.. +.+...+..+..++...|..+.|++.++
T Consensus 136 l~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 136 LRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADR 214 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHH
Confidence 99999998874 3355666666777766677666555554
Q ss_pred ------HHHHc-CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCC
Q 043191 185 ------KLRVF-GCELDVF-TY----NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252 (414)
Q Consensus 185 ------~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 252 (414)
.+.+. .-.|+.. .+ ...+.++...|++++|...|+.+.+.+. ..|+.... .+...+.
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~-----~~P~~a~~-~la~~yl----- 283 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQ-----IIPPWAQR-WVASAYL----- 283 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCC-----CCCHHHHH-HHHHHHH-----
Confidence 32221 0111111 11 1112334556777777777777776441 11322111 1222333
Q ss_pred CchhHHHHHhhccchhhHhhhhh-hhhhcccc-----ccHHHHHHHHHhcCChhHHHHHHHhchhCCC-----------C
Q 043191 253 ANFLGFSCMASFSALNKMAFYFP-LVRVQCLC-----LNFLCLIDGLCKISKLKIARELFQSLPRAGL-----------M 315 (414)
Q Consensus 253 ~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~ 315 (414)
..++.++|...++ .....|.. .....+..++...|++++|.++++.+..... .
T Consensus 284 ----------~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 284 ----------KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred ----------hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 4588999999988 55444332 2355566788999999999999999876531 1
Q ss_pred CC---HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC
Q 043191 316 PN---VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392 (414)
Q Consensus 316 p~---~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 392 (414)
|+ ...+..+...+...|++++|+. +++++.... +-+...+..+...+...|++++|++.+++.++. .|
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~------~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~P 424 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEM------RARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EP 424 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHH------HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CC
Confidence 23 2345567778999999999999 999998763 335788899999999999999999999999985 46
Q ss_pred C-HHHHHHHHHHHHHcCCccccC
Q 043191 393 D-AVTFTSLIKILEINSFFRQVA 414 (414)
Q Consensus 393 ~-~~~~~~li~~~~~~g~~~~a~ 414 (414)
+ ...+..+...+...|++++|+
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHH
Confidence 5 677777888899999988763
No 22
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.62 E-value=2.2e-13 Score=121.12 Aligned_cols=307 Identities=14% Similarity=0.098 Sum_probs=182.3
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCc
Q 043191 63 GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD-RYTYNILINCFCKMGRV 141 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~ 141 (414)
.++..|+.+.|.+.|....+.+| ...-....+...+-..|+.++|...+.+..+. .|. ...|+.|...+...|+.
T Consensus 159 al~~~~~~~~a~~~~~~alqlnP--~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 159 ALVTQGDLELAVQCFFEALQLNP--DLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEI 234 (966)
T ss_pred HHHhcCCCcccHHHHHHHHhcCc--chhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchH
Confidence 44567777777777777666543 11112222333333445555555555544433 222 23344444444444555
Q ss_pred chHHHHHHHHHHcCC---------------------------------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043191 142 SHGFVVLGRILRSCF---------------------------------TPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (414)
..|++.|++..+.+. +-....|..+...|-..|++|.|+..+++..+
T Consensus 235 ~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~ 314 (966)
T KOG4626|consen 235 WLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE 314 (966)
T ss_pred HHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHh
Confidence 555554444444320 11233344444444455555555555555544
Q ss_pred cCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCc-hhhHHHHHHHHHhhcCCCchhHHHHHhhccc
Q 043191 189 FGCELD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD-AITYSTIIDGLCKEAGSANFLGFSCMASFSA 266 (414)
Q Consensus 189 ~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~ 266 (414)
. .|+ ...|+.|..++-..|++.+|.+.+..... ..|+ ....+.|...+. ..+.
T Consensus 315 ~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--------l~p~hadam~NLgni~~---------------E~~~ 369 (966)
T KOG4626|consen 315 L--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--------LCPNHADAMNNLGNIYR---------------EQGK 369 (966)
T ss_pred c--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--------hCCccHHHHHHHHHHHH---------------Hhcc
Confidence 3 222 44555555565555666666666555554 2222 223334444443 4577
Q ss_pred hhhHhhhhh-hhhhccc-cccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCC-HhhHHHHHHHHHhcCChhhhhhhhhH
Q 043191 267 LNKMAFYFP-LVRVQCL-CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN-VVTYNILIRGLCNDGQMDETKHYETV 343 (414)
Q Consensus 267 ~~~a~~~~~-~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~a 343 (414)
++.|..++. .....|. ...++.|...|-+.|++++|+..|++..+ +.|+ ...|+.+-..|-..|+.+.|.+
T Consensus 370 ~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q---- 443 (966)
T KOG4626|consen 370 IEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQ---- 443 (966)
T ss_pred chHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHH----
Confidence 788888877 5555444 56688889999999999999999998876 4565 4678888888888888888877
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCH-HHHHHHHHHHHHcCCc
Q 043191 344 FLLFKRLNSTGLFPD-LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA-VTFTSLIKILEINSFF 410 (414)
Q Consensus 344 ~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~ 410 (414)
.+.+.+.. .|. ...++.|...|-..|++.+|+.-+++.++ ++||. ..|-.++.++.-..+|
T Consensus 444 --~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 444 --CYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred --HHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcc
Confidence 77777754 444 45788888999999999999999999988 56663 4455555544433333
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.5e-12 Score=110.94 Aligned_cols=316 Identities=16% Similarity=0.149 Sum_probs=229.6
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHH--hcCC-hhHHHHHHHHHHhCC-------------------CC
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA--KTKH-YDTVLSLFKRLNLTG-------------------LF 122 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~-~~~a~~~~~~m~~~g-------------------~~ 122 (414)
+..|.+.++.-+++.|...+. ..+...--.|++.-+ ...+ +-.-++.|-.|...| .+
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HhhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 455788899999999998887 445554444444322 2111 111122333333221 12
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043191 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202 (414)
Q Consensus 123 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 202 (414)
-+..||.++|.+.++-...+.|.++|++-.....+.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 36789999999999999999999999999888779999999999987543322 78899999999999999999999
Q ss_pred HHHHhcCChHH----HHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hh
Q 043191 203 NGLCRTGHTIV----ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LV 277 (414)
Q Consensus 203 ~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~ 277 (414)
++..+.|+++. |.+++.+|++-| +.|...+|..+|..+++.++...+.... ..++.. +.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiG------VePsLsSyh~iik~f~re~dp~k~as~~----------i~dI~N~lt 344 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIG------VEPSLSSYHLIIKNFKRESDPQKVASSW----------INDIQNSLT 344 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhC------CCcchhhHHHHHHHhcccCCchhhhHHH----------HHHHHHhhc
Confidence 99999998764 678999999999 9999999999999998876654322111 111111 11
Q ss_pred hh------ccccccHHHHHHHHHhcCChhHHHHHHHhchhCC----CCCC---HhhHHHHHHHHHhcCChhhhhhhhhHH
Q 043191 278 RV------QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG----LMPN---VVTYNILIRGLCNDGQMDETKHYETVF 344 (414)
Q Consensus 278 ~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~a~ 344 (414)
++ +.+...|...+..|.+..+.+.|.++-.-+.... +.|+ ..-|..+....|.....+....
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~----- 419 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK----- 419 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 11 3344557778899999999999988876554321 2333 2345667777777777777666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHc
Q 043191 345 LLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407 (414)
Q Consensus 345 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 407 (414)
.|+.|+-.-+-|+..+...++++....|.++-.-+++..++..|..-+...-.-++..+++.
T Consensus 420 -~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 420 -WYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred -HHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 99999988888999999999999999999999999999999887655555555555555544
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=4.7e-12 Score=114.84 Aligned_cols=282 Identities=7% Similarity=-0.003 Sum_probs=160.1
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHhcCCcchH
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN--ILINCFCKMGRVSHG 144 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a 144 (414)
.|+++.|.+.+....+... . ....|.....+..+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~-~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE-Q-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc-c-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 4788888877776544322 1 1223333344446778888888888887654 45543332 335567777888888
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHH
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV-------FTYNTLINGLCRTGHTIVALNL 217 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~ 217 (414)
.+.++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888887765 446677777888888888888888888888776543222 1223333333334444555555
Q ss_pred HHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhccccccHHHHHHHHHhc
Q 043191 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQCLCLNFLCLIDGLCKI 296 (414)
Q Consensus 218 ~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~li~~~~~~ 296 (414)
++.+... .+.+......+..++.. .|+.++|...+. .....++. -..++.+.+..
T Consensus 252 w~~lp~~-------~~~~~~~~~~~A~~l~~---------------~g~~~~A~~~L~~~l~~~~~~--~l~~l~~~l~~ 307 (398)
T PRK10747 252 WKNQSRK-------TRHQVALQVAMAEHLIE---------------CDDHDTAQQIILDGLKRQYDE--RLVLLIPRLKT 307 (398)
T ss_pred HHhCCHH-------HhCCHHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHhcCCCH--HHHHHHhhccC
Confidence 5554332 12233334444444333 355555555555 33333322 11123333344
Q ss_pred CChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043191 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376 (414)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 376 (414)
++.+++.+..+...+.... |...+..+-..|.+.+++++|.+ .|+...+. .|+...+..+...+.+.|+.+
T Consensus 308 ~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~------~le~al~~--~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASL------AFRAALKQ--RPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred CChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHH------HHHHHHhc--CCCHHHHHHHHHHHHHcCCHH
Confidence 6666666666665554322 44455556666666666666666 66666554 466666666666666666666
Q ss_pred HHHHHHHhhh
Q 043191 377 SGFVIFGRIL 386 (414)
Q Consensus 377 ~a~~~~~~m~ 386 (414)
+|.+++++-.
T Consensus 379 ~A~~~~~~~l 388 (398)
T PRK10747 379 EAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 25
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=6.6e-12 Score=114.49 Aligned_cols=290 Identities=7% Similarity=-0.060 Sum_probs=167.4
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCcc
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY--TYNILINCFCKMGRVS 142 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~ 142 (414)
...|+++.|.+.+....+..+ .+...+-....+..+.|+++.|.+.+.+..+. .|+.. .-......+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~--~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAA--EPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 356888888888877766543 22334445556677778888888888887654 34432 3333466777788888
Q ss_pred hHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhcCChHHHHHHH
Q 043191 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN-TLINGL---CRTGHTIVALNLF 218 (414)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~g~~~~a~~~~ 218 (414)
.|.+.++.+.+.. +-+...+..+...+.+.|++++|.+.+..+.+.++. +...+. .-..++ ...+..+++.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888775 446677888888888888888888888888877643 333221 111111 2223333333344
Q ss_pred HHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhcccccc---HHHHHHHHH
Q 043191 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQCLCLN---FLCLIDGLC 294 (414)
Q Consensus 219 ~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~---~~~li~~~~ 294 (414)
..+.+.... ..+.+...+..+...+.. .|+.++|.+.+. .....|+... .........
T Consensus 249 ~~~~~~~p~---~~~~~~~l~~~~a~~l~~---------------~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l 310 (409)
T TIGR00540 249 LNWWKNQPR---HRRHNIALKIALAEHLID---------------CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL 310 (409)
T ss_pred HHHHHHCCH---HHhCCHHHHHHHHHHHHH---------------CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc
Confidence 444432200 011244444444444433 355666666666 4444444332 111112223
Q ss_pred hcCChhHHHHHHHhchhCCCCCCH--hhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043191 295 KISKLKIARELFQSLPRAGLMPNV--VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372 (414)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 372 (414)
..++.+.+.+.++...+.... |. ....++-..+.+.|++++|.+ .|+........|+...+..+...+.+.
T Consensus 311 ~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~------~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 311 KPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAAD------AFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred CCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHH------HHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 345566666666655443211 23 344456666667777666666 666433333456666666666677777
Q ss_pred CCHHHHHHHHHhh
Q 043191 373 GRVSSGFVIFGRI 385 (414)
Q Consensus 373 g~~~~a~~~~~~m 385 (414)
|+.++|.+++++.
T Consensus 384 g~~~~A~~~~~~~ 396 (409)
T TIGR00540 384 GDKAEAAAMRQDS 396 (409)
T ss_pred CCHHHHHHHHHHH
Confidence 7777777666654
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=5.7e-15 Score=127.96 Aligned_cols=90 Identities=16% Similarity=0.134 Sum_probs=39.1
Q ss_pred HHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043191 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368 (414)
Q Consensus 289 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 368 (414)
++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|.. .+++..... +.|+.....+..+
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~------~~~~~~~~~-p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALE------YLEKALKLN-PDDPLWLLAYADA 257 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHH------HHHHHHHHS-TT-HHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccc------ccccccccc-ccccccccccccc
Confidence 3444444466666666665554432 2244455566666666666666666 666655531 2255556666666
Q ss_pred HHhcCCHHHHHHHHHhhh
Q 043191 369 FCKIGRVSSGFVIFGRIL 386 (414)
Q Consensus 369 ~~~~g~~~~a~~~~~~m~ 386 (414)
+...|+.++|.++..+..
T Consensus 258 l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 258 LEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HT----------------
T ss_pred cccccccccccccccccc
Confidence 666666666666655543
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=2.2e-14 Score=124.31 Aligned_cols=254 Identities=14% Similarity=0.074 Sum_probs=107.8
Q ss_pred CCCCCCCHHhHHHHHHHHHhcC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCc
Q 043191 63 GDITSITPNEALCVFDYMLNMR-PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 141 (414)
-+.+.|++++|+++++...... + ..+...|..+.......++++.|.+.++++...+.. +...+..++.. ...+++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~-~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAP-PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 4457799999999996554443 3 356677777778888899999999999999876533 56677777777 789999
Q ss_pred chHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043191 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG-CELDVFTYNTLINGLCRTGHTIVALNLFEE 220 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 220 (414)
++|.++++...+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887665 3567778889999999999999999999987533 356778899999999999999999999999
Q ss_pred HHcCCCCCCccccCc-hhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcC
Q 043191 221 MANGNGEFGVVCEPD-AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKIS 297 (414)
Q Consensus 221 m~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~ 297 (414)
..+ ..|+ ......++..+.. .|+.+++...+. .... +.+...+..+..+|...|
T Consensus 172 al~--------~~P~~~~~~~~l~~~li~---------------~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 172 ALE--------LDPDDPDARNALAWLLID---------------MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLG 228 (280)
T ss_dssp HHH--------H-TT-HHHHHHHHHHHCT---------------TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT
T ss_pred HHH--------cCCCCHHHHHHHHHHHHH---------------CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccc
Confidence 998 5565 5556666666654 477777777777 4444 567788899999999999
Q ss_pred ChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHH
Q 043191 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351 (414)
Q Consensus 298 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~ 351 (414)
+.++|...|++....... |+.....+..++...|+.++|.+ +..+..
T Consensus 229 ~~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~------~~~~~~ 275 (280)
T PF13429_consen 229 RYEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALR------LRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT----------------------
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccc------cccccc
Confidence 999999999998875433 88888999999999999999988 665543
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=8.9e-12 Score=113.06 Aligned_cols=272 Identities=12% Similarity=0.070 Sum_probs=202.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHH--HHHHHHHhcCCHHHH
Q 043191 103 TKHYDTVLSLFKRLNLTGLFPDRYT-YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT--SLIKDLCAESRIMEA 179 (414)
Q Consensus 103 ~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a 179 (414)
.|+++.|.+.+....+.. ++... |.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 699999998888766542 22233 333344557899999999999999875 55554333 336788999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchh-------hHHHHHHHHHhhcCC
Q 043191 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI-------TYSTIIDGLCKEAGS 252 (414)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~-------~~~~li~~~~~~~~~ 252 (414)
.+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.. ..++.. .|..++.....
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~------~~~~~~~~~l~~~a~~~l~~~~~~---- 241 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH------VGDEEHRAMLEQQAWIGLMDQAMA---- 241 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHH----
Confidence 99999998875 4567889999999999999999999999999876 222211 12222222111
Q ss_pred CchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHh
Q 043191 253 ANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330 (414)
Q Consensus 253 ~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 330 (414)
..+.+...+.++ .... +.+......+...+...|+.++|.+++++..+. .|+... .++.+...
T Consensus 242 -----------~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~ 306 (398)
T PRK10747 242 -----------DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLK 306 (398)
T ss_pred -----------hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhcc
Confidence 123444445544 3333 456777888999999999999999999998774 344422 23444456
Q ss_pred cCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCc
Q 043191 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFF 410 (414)
Q Consensus 331 ~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 410 (414)
.++.+++.+ ..+...+.. +-|...+..+...|.+.|++++|.+.|+...+ ..|+..++..+...+.+.|+.
T Consensus 307 ~~~~~~al~------~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 307 TNNPEQLEK------VLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred CCChHHHHH------HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCH
Confidence 688888877 888888763 23566788899999999999999999999998 479999999999999999998
Q ss_pred ccc
Q 043191 411 RQV 413 (414)
Q Consensus 411 ~~a 413 (414)
++|
T Consensus 378 ~~A 380 (398)
T PRK10747 378 EEA 380 (398)
T ss_pred HHH
Confidence 876
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.55 E-value=2.1e-11 Score=120.51 Aligned_cols=288 Identities=11% Similarity=0.022 Sum_probs=178.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCC-CCCCHhhHHHHHHHHHhcCC---hhHHHHH----------------------HHHHHh
Q 043191 65 ITSITPNEALCVFDYMLNMRP-SRPPVTSFNILFGCLAKTKH---YDTVLSL----------------------FKRLNL 118 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~---~~~a~~~----------------------~~~m~~ 118 (414)
++.|+.++|.++|+....... -..+...-.-++..|.+.+. ..++..+ .+....
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 455677777777776655211 12334444566666666554 2222222 111110
Q ss_pred C-CC-CC--CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043191 119 T-GL-FP--DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194 (414)
Q Consensus 119 ~-g~-~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 194 (414)
. +. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...+.+.|++++|...|+++... +|+
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~ 541 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMS 541 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCC
Confidence 0 11 22 44555666655555 6666777766666554 344443333444445677777777777776543 344
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchh-hHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhh
Q 043191 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI-TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273 (414)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 273 (414)
...+..+..++.+.|++++|...+++..+.. |+.. .+..+..... ..|++++|...
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--------P~~~~l~~~La~~l~---------------~~Gr~~eAl~~ 598 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRG--------LGDNALYWWLHAQRY---------------IPGQPELALND 598 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHH---------------hCCCHHHHHHH
Confidence 4455566666777777777777777776532 3321 1111111111 23778888888
Q ss_pred hh-hhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh
Q 043191 274 FP-LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352 (414)
Q Consensus 274 ~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~ 352 (414)
+. .....|+...+..+..++.+.|++++|+..|++....... +...++.+..++...|++++|.. .+++..+
T Consensus 599 ~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~------~l~~AL~ 671 (987)
T PRK09782 599 LTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSRE------MLERAHK 671 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH------HHHHHHH
Confidence 88 6666667777888888888888888888888888776433 56667777778888888888877 8888777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 353 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
... -+...+..+..++...|++++|...+++.++.
T Consensus 672 l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 672 GLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 532 25677888888888888888888888888774
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2.3e-12 Score=115.87 Aligned_cols=280 Identities=13% Similarity=0.094 Sum_probs=208.5
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG--LFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
-+..+|+..|..+..+.. .+......+.++|...+++++|.++|+.+.+.. ..-+.++|.+.+-.+-+ +-++
T Consensus 333 y~~~~A~~~~~klp~h~~--nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHY--NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHhhHHhcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 356889999999655543 444666888899999999999999999988652 11267888888765533 2233
Q ss_pred HHHH-HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 146 VVLG-RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 146 ~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
..+. .+.+.. +-.+.+|-++-++|.-.++.+.|++.|++..+.. +....+|+.+..-+....++|.|...|+....
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~- 483 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG- 483 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc-
Confidence 3332 333332 5678899999999999999999999999998764 33788999999999999999999999999865
Q ss_pred CCCCCccccCchhhHHH---HHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCCh
Q 043191 225 NGEFGVVCEPDAITYST---IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKL 299 (414)
Q Consensus 225 ~~~~~~~~~p~~~~~~~---li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~ 299 (414)
.|...|++ +.-.|. +.++++.|...|+ .... +.+.+....+...+-+.|+.
T Consensus 484 ---------~~~rhYnAwYGlG~vy~---------------Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 484 ---------VDPRHYNAWYGLGTVYL---------------KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred ---------CCchhhHHHHhhhhhee---------------ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh
Confidence 44444443 333443 3578888888888 5554 55677777788888899999
Q ss_pred hHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 043191 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP-DLYTYNILINCFCKIGRVSSG 378 (414)
Q Consensus 300 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a 378 (414)
|+|+++|++......+ |+..--.....+...+++++|.. .++++++. .| +...|..+...|.+.|+.+.|
T Consensus 540 d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~------~LEeLk~~--vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 540 DKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQ------ELEELKEL--VPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred hHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHH------HHHHHHHh--CcchHHHHHHHHHHHHHHccchHH
Confidence 9999999988765544 44444445566677788777777 89988875 44 456778888889999999999
Q ss_pred HHHHHhhhhCC
Q 043191 379 FVIFGRILPSC 389 (414)
Q Consensus 379 ~~~~~~m~~~g 389 (414)
+.-|.-+.+..
T Consensus 611 l~~f~~A~~ld 621 (638)
T KOG1126|consen 611 LLHFSWALDLD 621 (638)
T ss_pred HHhhHHHhcCC
Confidence 98888887753
No 31
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=3.3e-11 Score=99.30 Aligned_cols=289 Identities=12% Similarity=0.103 Sum_probs=191.2
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCCc
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD---RYTYNILINCFCKMGRV 141 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~ 141 (414)
+-++++++|.++|-.|.+..+ .+..+.-+|...|.+.|..+.|+.+...+.+..-.+. ....-.|..-|...|-+
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 344678899999999988664 6667777888889999999999999888876522221 12334566678888999
Q ss_pred chHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHH
Q 043191 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV----FTYNTLINGLCRTGHTIVALNL 217 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~ 217 (414)
+.|+++|..+.+.+ ..-......|+..|-...+|++|+++-+++...|-.+.. ..|.-|...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999888765 345567788888999999999999998888876544432 3466677777777888899998
Q ss_pred HHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhccc--cccHHHHHHHHH
Q 043191 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQCL--CLNFLCLIDGLC 294 (414)
Q Consensus 218 ~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~--~~~~~~li~~~~ 294 (414)
+++..+.+ |..+--+.++.-.. +..|+++.|.+.++ ..+..|+ ..+...|..+|.
T Consensus 203 l~kAlqa~--------~~cvRAsi~lG~v~--------------~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 203 LKKALQAD--------KKCVRASIILGRVE--------------LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYA 260 (389)
T ss_pred HHHHHhhC--------ccceehhhhhhHHH--------------HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 88888743 44333333332221 23577777777777 5555444 445666777888
Q ss_pred hcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 043191 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK--- 371 (414)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--- 371 (414)
+.|+.++....+.++.+.... ...-..+-+-.....-.+.|..+ +.+.+.. +|+...+..+|..-..
T Consensus 261 ~lg~~~~~~~fL~~~~~~~~g--~~~~l~l~~lie~~~G~~~Aq~~-----l~~Ql~r---~Pt~~gf~rl~~~~l~dae 330 (389)
T COG2956 261 QLGKPAEGLNFLRRAMETNTG--ADAELMLADLIELQEGIDAAQAY-----LTRQLRR---KPTMRGFHRLMDYHLADAE 330 (389)
T ss_pred HhCCHHHHHHHHHHHHHccCC--ccHHHHHHHHHHHhhChHHHHHH-----HHHHHhh---CCcHHHHHHHHHhhhcccc
Confidence 888888888887777665332 22333333333333444555551 3333333 5777777777775432
Q ss_pred cCCHHHHHHHHHhhhhC
Q 043191 372 IGRVSSGFVIFGRILPS 388 (414)
Q Consensus 372 ~g~~~~a~~~~~~m~~~ 388 (414)
.|...+...+++.|...
T Consensus 331 eg~~k~sL~~lr~mvge 347 (389)
T COG2956 331 EGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccchhhhHHHHHHHHHH
Confidence 34455666666666644
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.55 E-value=3.9e-11 Score=118.66 Aligned_cols=296 Identities=12% Similarity=0.001 Sum_probs=216.6
Q ss_pred HHHHHHHHHhcCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHH
Q 043191 73 ALCVFDYMLNMRPSRP--PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150 (414)
Q Consensus 73 A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 150 (414)
+.+.+.......+ + +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...|++
T Consensus 460 ~~~~~~~al~~~p--~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 460 NCPAIVRLLGDMS--PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hHHHHHHhcccCC--CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444333 4 67788888888876 7888999988887765 46655444445555689999999999998
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCc
Q 043191 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGV 230 (414)
Q Consensus 151 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 230 (414)
+... +|+...+..+..++.+.|+.++|...+++..+.. +.+...+..+...+.+.|++++|...+++..+
T Consensus 535 a~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~------- 604 (987)
T PRK09782 535 ISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN------- 604 (987)
T ss_pred Hhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------
Confidence 7654 4555556677788899999999999999998764 23333444444455566999999999999987
Q ss_pred cccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhcc-ccccHHHHHHHHHhcCChhHHHHHHHh
Q 043191 231 VCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQC-LCLNFLCLIDGLCKISKLKIARELFQS 308 (414)
Q Consensus 231 ~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 308 (414)
..|+...+..+...+.+ .|+.++|...+. .....| +...++.+..++...|++++|+..|++
T Consensus 605 -l~P~~~a~~~LA~~l~~---------------lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 605 -IAPSANAYVARATIYRQ---------------RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred -hCCCHHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55776677766666655 488999999998 666544 566778888899999999999999999
Q ss_pred chhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 309 LPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL-YTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 309 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
..+.... +...+..+..++...|++++|.. .+++..+. .|+. .+.-.......+..+++.|.+-+++...
T Consensus 669 AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~------~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 669 AHKGLPD-DPALIRQLAYVNQRLDDMAATQH------YARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH------HHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9886543 67788899999999999999999 99999876 3543 4444555666777778888888877766
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCc
Q 043191 388 SCFTPDAVTFTSLIKILEINSFF 410 (414)
Q Consensus 388 ~g~~p~~~~~~~li~~~~~~g~~ 410 (414)
+.|+.......-..+...+++
T Consensus 740 --~~~~~~a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 740 --FSFDSSIGLRSGAMSTANNNV 760 (987)
T ss_pred --cCccchhccccchHhhhcccc
Confidence 455555554454555544444
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=4.4e-11 Score=111.16 Aligned_cols=332 Identities=13% Similarity=0.099 Sum_probs=220.3
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 146 (414)
.|+.++|.+++.++.+..| .....|-+|...|-+.|+.+++...+-..--. .+-|...|..+.....+.|+++.|.-
T Consensus 152 rg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHH
Confidence 3999999999999999987 78889999999999999999998876544322 13367889999999999999999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043191 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV----FTYNTLINGLCRTGHTIVALNLFEEMA 222 (414)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~ 222 (414)
.|.+.++.. +++...+---+..|-+.|+...|...|.++....-+.|. ..--.+++.+...++.+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999885 556655556677899999999999999999876421122 223345667777888888988888887
Q ss_pred cCCCCCCccccCchhhHHHHHHHHHhh---cC-------------------------------------CCc--h-hHHH
Q 043191 223 NGNGEFGVVCEPDAITYSTIIDGLCKE---AG-------------------------------------SAN--F-LGFS 259 (414)
Q Consensus 223 ~~~~~~~~~~~p~~~~~~~li~~~~~~---~~-------------------------------------~~~--~-~~~~ 259 (414)
..+.. ..-.||..++..|+-..... +. ..+ + ....
T Consensus 308 s~~~~--~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 308 SKEKD--EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred hhccc--cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 74321 11234444443333211110 00 000 0 1111
Q ss_pred HHhhccchhhHhhhhh-hhhh----ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCh
Q 043191 260 CMASFSALNKMAFYFP-LVRV----QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334 (414)
Q Consensus 260 ~~~~~~~~~~a~~~~~-~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 334 (414)
++......+....+.. .... .-+...|.-+..+|...|++.+|+.+|..+...-..-+...|--+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 1112222222222222 1111 2234456667788888888888888888887664444667788888888888888
Q ss_pred hhhhhhhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhhh--------CCCCCCHHHHHHHHHHHH
Q 043191 335 DETKHYETVFLLFKRLNSTGLFPD-LYTYNILINCFCKIGRVSSGFVIFGRILP--------SCFTPDAVTFTSLIKILE 405 (414)
Q Consensus 335 ~~a~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~g~~p~~~~~~~li~~~~ 405 (414)
+.|.+ .+...... .|+ ...--+|-..+-+.|+.++|.+.+..+.. .+..|+....-...+.+.
T Consensus 466 e~A~e------~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 466 EEAIE------FYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHH------HHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 88777 77777764 232 33444455567788888888888887542 234566666666666777
Q ss_pred HcCCccc
Q 043191 406 INSFFRQ 412 (414)
Q Consensus 406 ~~g~~~~ 412 (414)
+.|+.++
T Consensus 538 ~~gk~E~ 544 (895)
T KOG2076|consen 538 QVGKREE 544 (895)
T ss_pred HhhhHHH
Confidence 7766553
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=5e-11 Score=108.79 Aligned_cols=288 Identities=10% Similarity=0.000 Sum_probs=200.6
Q ss_pred HHHHHHH--HhcCChhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH--HhHHHHHH
Q 043191 94 NILFGCL--AKTKHYDTVLSLFKRLNLTGLFPDRY-TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA--VTFTSLIK 168 (414)
Q Consensus 94 ~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~ 168 (414)
..+.++. ...|+++.|.+.+.+..+. .|+.. .+-....+..+.|+++.|.+.+.+..+.. |+. ...-....
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~ 161 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHH
Confidence 3344443 4579999999999887765 45433 34445677788899999999999987753 443 34444578
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHH-HHHHHH-
Q 043191 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS-TIIDGL- 246 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~-~li~~~- 246 (414)
.+...|+++.|...++++.+.. +-+..++..+...+.+.|++++|.+++..+.+.+ .. +...+. ....++
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~------~~-~~~~~~~l~~~a~~ 233 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG------LF-DDEEFADLEQKAEI 233 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC------CC-CHHHHHHHHHHHHH
Confidence 8899999999999999999885 4467789999999999999999999999999876 22 222221 111111
Q ss_pred --HhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHH
Q 043191 247 --CKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYN 322 (414)
Q Consensus 247 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 322 (414)
...+. .....+....... .... +.+...+..+...+...|+.++|.+++++..+.........+.
T Consensus 234 ~~l~~~~-----------~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 234 GLLDEAM-----------ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred HHHHHHH-----------HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence 11000 0111222233333 2221 3467888889999999999999999999998864332211111
Q ss_pred HHHH--HHHhcCChhhhhhhhhHHHHHHHHHhCCCCC-CH--HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHH
Q 043191 323 ILIR--GLCNDGQMDETKHYETVFLLFKRLNSTGLFP-DL--YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397 (414)
Q Consensus 323 ~li~--~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p-~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 397 (414)
++. .....++.+.+.+ .++...+. .| |+ ....++...|.+.|++++|.+.|+........|+...+
T Consensus 303 -~l~~~~~l~~~~~~~~~~------~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 303 -LCLPIPRLKPEDNEKLEK------LIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred -HHHHhhhcCCCChHHHHH------HHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 222 2333466666655 77776654 33 34 56678899999999999999999954433357999999
Q ss_pred HHHHHHHHHcCCcccc
Q 043191 398 TSLIKILEINSFFRQV 413 (414)
Q Consensus 398 ~~li~~~~~~g~~~~a 413 (414)
..+...+.+.|+.++|
T Consensus 374 ~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 374 AMAADAFDQAGDKAEA 389 (409)
T ss_pred HHHHHHHHHcCCHHHH
Confidence 9999999999998876
No 35
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.3e-10 Score=98.69 Aligned_cols=275 Identities=9% Similarity=-0.014 Sum_probs=144.6
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 146 (414)
.|++..|+++..+-.+.+. .....|-.-..+.-+.|+.+.+-.++.+..+..-.++...+-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3455555555555444432 22333444444444555555555555555443223333344444444555555555555
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHH
Q 043191 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV-------FTYNTLINGLCRTGHTIVALNLFE 219 (414)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~ 219 (414)
-+.++.+.+ +.++........+|.+.|++..+..++..|.+.|+--|. .+|+.+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 555555443 334445555555555555555555555555555433222 123333333332222222222222
Q ss_pred HHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhh-ccccccHHHHHHHHHhcCC
Q 043191 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV-QCLCLNFLCLIDGLCKISK 298 (414)
Q Consensus 220 ~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~ 298 (414)
.. .+. +.++..-.+++.-+.++|+
T Consensus 254 ~~-------------------------------------------------------pr~lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 254 NQ-------------------------------------------------------PRKLRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred hc-------------------------------------------------------cHHhhcChhHHHHHHHHHHHcCC
Confidence 22 222 3334445556667777788
Q ss_pred hhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 043191 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS-TGLFPDLYTYNILINCFCKIGRVSS 377 (414)
Q Consensus 299 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~ 377 (414)
.++|.++.++..+++..|+. ...-.+.+-++.+.-++ ..+.-.. .+. ++..+.+|-..|.+.+.|.+
T Consensus 279 ~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k------~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 279 HDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIK------AAEKWLKQHPE--DPLLLSTLGRLALKNKLWGK 346 (400)
T ss_pred hHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHH------HHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHH
Confidence 88888887777776665541 11223445555544433 3333332 332 34667777777778888888
Q ss_pred HHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 378 GFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 378 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
|...|+..++ ..|+..+|+.+..++.+.|+.++|
T Consensus 347 A~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 347 ASEALEAALK--LRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHH
Confidence 8888876666 467778888888888887777665
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=1.3e-12 Score=120.67 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=70.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCH
Q 043191 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394 (414)
Q Consensus 315 ~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 394 (414)
.|+..+|.+++.+-.-.|+.+.|.. ++.+|.+.|+..+...|..|+-+ .++...+..++.-|.+.|+.|+.
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~------ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~s 271 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKN------LLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGS 271 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHH------HHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCc
Confidence 4788888888888888888888888 88888888888888877777755 77788888888888888888888
Q ss_pred HHHHHHHHHHHHcCCc
Q 043191 395 VTFTSLIKILEINSFF 410 (414)
Q Consensus 395 ~~~~~li~~~~~~g~~ 410 (414)
.|+...+..+..+|..
T Consensus 272 eT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 272 ETQADYVIPQLSNGQT 287 (1088)
T ss_pred chhHHHHHhhhcchhh
Confidence 8888888777775543
No 37
>PF13041 PPR_2: PPR repeat family
Probab=99.47 E-value=1.3e-13 Score=84.45 Aligned_cols=50 Identities=34% Similarity=0.618 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHH
Q 043191 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406 (414)
Q Consensus 357 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 406 (414)
||..+|+++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.45 E-value=7.4e-10 Score=107.57 Aligned_cols=142 Identities=13% Similarity=0.013 Sum_probs=109.6
Q ss_pred hccchhhHhhhhh-hhhhc-------cccccHHHHHHHHHhcCChhHHHHHHHhchhCCC-----------CCCH---hh
Q 043191 263 SFSALNKMAFYFP-LVRVQ-------CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL-----------MPNV---VT 320 (414)
Q Consensus 263 ~~~~~~~a~~~~~-~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~~---~~ 320 (414)
..+..++|..++. ..... ++......|.-+|...+++++|..+++.+.+... .||. ..
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 4578888888888 43332 1222246789999999999999999999987321 1222 23
Q ss_pred HHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC-CHHHHHH
Q 043191 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP-DAVTFTS 399 (414)
Q Consensus 321 ~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ 399 (414)
+..++..+...|++.+|++ .++++.... +-|......+...+...|.+.+|.+.++..... .| +..+...
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~------~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~ 489 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQK------KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERA 489 (822)
T ss_pred HHHHHHHHHHcCCHHHHHH------HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHH
Confidence 3456778899999999999 999998764 348889999999999999999999999777664 44 4677788
Q ss_pred HHHHHHHcCCcccc
Q 043191 400 LIKILEINSFFRQV 413 (414)
Q Consensus 400 li~~~~~~g~~~~a 413 (414)
...++...|+|++|
T Consensus 490 ~~~~al~l~e~~~A 503 (822)
T PRK14574 490 QAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHhhhhHHHH
Confidence 88888889998876
No 39
>PF13041 PPR_2: PPR repeat family
Probab=99.45 E-value=3.3e-13 Score=82.69 Aligned_cols=50 Identities=44% Similarity=0.849 Sum_probs=38.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043191 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207 (414)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 207 (414)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
No 40
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=3.1e-11 Score=111.78 Aligned_cols=253 Identities=12% Similarity=0.105 Sum_probs=178.7
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 043191 76 VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155 (414)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 155 (414)
++-.+...|. .|+.++|..+|.-|+..|+.+.|- +|.-|.-.....+...|+.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi-~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEISGI-LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHhcC-CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 4455666677 899999999999999999999988 9988887777778889999999999999888776
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHH----HcCCC-CCHHHH-------------HHHHHHHHhcCChHHH
Q 043191 156 FTPDAVTFTSLIKDLCAESRIME---AAALFTKLR----VFGCE-LDVFTY-------------NTLINGLCRTGHTIVA 214 (414)
Q Consensus 156 ~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~----~~g~~-~~~~~~-------------~~li~~~~~~g~~~~a 214 (414)
.|...+|..|..+|...||+.. +.+.+..+. ..|+- |....+ ...+.-..-.|.|+.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 7889999999999999998765 222111111 12211 111111 1122333444556666
Q ss_pred HHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhccccccHHHHHHHH
Q 043191 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQCLCLNFLCLIDGL 293 (414)
Q Consensus 215 ~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~li~~~ 293 (414)
++++..+..... ..|..+ .++-+.. ....+++.....+ ..+ .++..+|.+++.+-
T Consensus 159 lkll~~~Pvsa~-----~~p~~v----fLrqnv~--------------~ntpvekLl~~cksl~e-~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 159 LKLLAKVPVSAW-----NAPFQV----FLRQNVV--------------DNTPVEKLLNMCKSLVE-APTSETLHAVLKRA 214 (1088)
T ss_pred HHHHhhCCcccc-----cchHHH----HHHHhcc--------------CCchHHHHHHHHHHhhc-CCChHHHHHHHHHH
Confidence 666555543221 111111 1222211 1233444444444 333 78999999999999
Q ss_pred HhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043191 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373 (414)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 373 (414)
...|+++.|..++.+|.+.|...+..-|..++-+ .++...+.. +++.|.+.|+.|+..|+...+-.+.+.|
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~------vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEF------VLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHH------HHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 9999999999999999999999898888888766 677666666 9999999999999999988887777744
Q ss_pred C
Q 043191 374 R 374 (414)
Q Consensus 374 ~ 374 (414)
.
T Consensus 286 ~ 286 (1088)
T KOG4318|consen 286 Q 286 (1088)
T ss_pred h
Confidence 4
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=3.6e-10 Score=93.34 Aligned_cols=275 Identities=16% Similarity=0.102 Sum_probs=199.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcC-CCCC--HHhHHHHHHHHHhcCCHHHH
Q 043191 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC-FTPD--AVTFTSLIKDLCAESRIMEA 179 (414)
Q Consensus 103 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~a 179 (414)
.++.++|.++|-+|.+.. +-+.++--+|.+.|-+.|..+.|+.+++.+.++. ++.+ ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 577999999999998742 2255566788999999999999999999998762 2111 12334566678899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHH
Q 043191 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259 (414)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~ 259 (414)
+.+|..+.+.| .--......|+..|-...+|++|+++-+++.+.++ .+..+ .+.+.||....
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~------q~~~~---eIAqfyCELAq-------- 188 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG------QTYRV---EIAQFYCELAQ-------- 188 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC------ccchh---HHHHHHHHHHH--------
Confidence 99999998765 33456778899999999999999999999988652 22211 12233443211
Q ss_pred HHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhh
Q 043191 260 CMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337 (414)
Q Consensus 260 ~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 337 (414)
......+.+.|...+. .... +..+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|...|+.++.
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 1123467788888887 4444 4455566667789999999999999999999987665667888999999999999998
Q ss_pred hhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHH
Q 043191 338 KHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406 (414)
Q Consensus 338 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 406 (414)
.. .+..+.+... +...-..+-+--....-.+.|...+.+-+.. +|+...+..+|+.-..
T Consensus 269 ~~------fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 269 LN------FLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HH------HHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 88 7888777633 3333333333333444456666666665553 7999999999987654
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=99.35 E-value=8.2e-10 Score=104.75 Aligned_cols=246 Identities=11% Similarity=0.044 Sum_probs=139.7
Q ss_pred ChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHh---------cCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043191 105 HYDTVLSLFKRLNLTGLFPD-RYTYNILINCFCK---------MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174 (414)
Q Consensus 105 ~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 174 (414)
.+++|.++|++..+. .|+ ...|..+..++.. .+++++|...+++..+.+ +-+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 466777777766654 343 3344444433321 223566777777766654 335566666666666777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchh-hHHHHHHHHHhhcCCC
Q 043191 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI-TYSTIIDGLCKEAGSA 253 (414)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~ 253 (414)
++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .|+.. .+..++..+..
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--------~P~~~~~~~~~~~~~~~----- 418 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--------DPTRAAAGITKLWITYY----- 418 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHh-----
Confidence 7777777777766653 334556666666777777777777777777663 33322 11222222222
Q ss_pred chhHHHHHhhccchhhHhhhhh-hhhh-ccc-cccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHh
Q 043191 254 NFLGFSCMASFSALNKMAFYFP-LVRV-QCL-CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330 (414)
Q Consensus 254 ~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 330 (414)
.|++++|...+. .... .|+ ...+..+..++...|+.++|...++++...... +....+.+...|+.
T Consensus 419 ----------~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 487 (553)
T PRK12370 419 ----------HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQ 487 (553)
T ss_pred ----------ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhc
Confidence 245566666665 3332 233 333555667778889999999999887654221 33445555566777
Q ss_pred cCChhhhhhhhhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC
Q 043191 331 DGQMDETKHYETVFLLFKRLNST-GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC 389 (414)
Q Consensus 331 ~g~~~~a~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 389 (414)
.|+ .|.. .++.+.+. ...+....+ +-..|.-.|+.+.+..+ +++.+.|
T Consensus 488 ~g~--~a~~------~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NSE--RALP------TIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cHH--HHHH------HHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 774 5555 55555542 112222222 33345566777766665 7777654
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=1.2e-09 Score=91.93 Aligned_cols=200 Identities=13% Similarity=0.052 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043191 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205 (414)
Q Consensus 126 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 205 (414)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344455555555666666666665555442 2334555555566666666666666666655543 23444555556666
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhcccccc
Q 043191 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN 285 (414)
Q Consensus 206 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (414)
...|++++|.+.+++..... ..+... ..
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~------~~~~~~----------------------------------------------~~ 137 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDP------LYPQPA----------------------------------------------RS 137 (234)
T ss_pred HHcccHHHHHHHHHHHHhcc------ccccch----------------------------------------------HH
Confidence 66666666666666665422 111100 01
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHH
Q 043191 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365 (414)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~l 365 (414)
+..+...+...|++++|...+++....... +...+..+...+...|++++|.. .+++..+. ...+...+..+
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~------~~~~~~~~-~~~~~~~~~~~ 209 (234)
T TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARA------YLERYQQT-YNQTAESLWLG 209 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHH------HHHHHHHh-CCCCHHHHHHH
Confidence 122333444556666666666665554222 34455566666666666666666 66665554 23344555556
Q ss_pred HHHHHhcCCHHHHHHHHHhhhh
Q 043191 366 INCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 366 i~~~~~~g~~~~a~~~~~~m~~ 387 (414)
...+...|+.++|..+.+.+.+
T Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 210 IRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh
Confidence 6666666777776666665543
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.2e-09 Score=91.25 Aligned_cols=303 Identities=11% Similarity=0.093 Sum_probs=215.7
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHhcCCcchHHH
Q 043191 69 TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF--PDRYTYNILINCFCKMGRVSHGFV 146 (414)
Q Consensus 69 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~~~~~~a~~ 146 (414)
..+++++-.+.....|. ..+...-+....+.-...+++.|+.+|+++.++... -|..+|+.++ |.+..+-. +.
T Consensus 242 q~~e~~~k~e~l~~~gf-~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~sk--Ls 316 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGF-PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSK--LS 316 (559)
T ss_pred HHHHHHHHHHHHHhccC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHH--HH
Confidence 44566666665555554 333333344455556778899999999988876311 1677787776 33433222 22
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC
Q 043191 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226 (414)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 226 (414)
.+.+-...--+--+.|+..+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|.+-++...+-.
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~- 394 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN- 394 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-
Confidence 22222111113455677788888999999999999999998875 4457789999999999999999999999999854
Q ss_pred CCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHH
Q 043191 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARE 304 (414)
Q Consensus 227 ~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~ 304 (414)
+.|-..|-.+-++|.-. +...=|.-.++ .... +.|...|.+|.++|.+.++.++|++
T Consensus 395 ------p~DyRAWYGLGQaYeim---------------~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 395 ------PRDYRAWYGLGQAYEIM---------------KMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred ------chhHHHHhhhhHHHHHh---------------cchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 56788999999998764 45555666676 4444 5678999999999999999999999
Q ss_pred HHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 043191 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS----TGLFPD--LYTYNILINCFCKIGRVSSG 378 (414)
Q Consensus 305 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~a 378 (414)
-|......|-. +...+..|.+.|-+.++.++|.. .|...++ .|..-+ ...-.-|...+.+.+++++|
T Consensus 454 Cykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~------~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 454 CYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQ------YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 99999887644 66889999999999999999877 5555443 343322 22223355677899999999
Q ss_pred HHHHHhhhhCCCCCCHHHHHHHHHHHHHcC
Q 043191 379 FVIFGRILPSCFTPDAVTFTSLIKILEINS 408 (414)
Q Consensus 379 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 408 (414)
.......... .+...--+.|++.+.+..
T Consensus 527 s~Ya~~~~~~--~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 527 SYYATLVLKG--ETECEEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHhcC--CchHHHHHHHHHHHHHhc
Confidence 8877666653 566677777777776654
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=2.8e-09 Score=92.14 Aligned_cols=143 Identities=13% Similarity=0.154 Sum_probs=104.7
Q ss_pred hccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhh-
Q 043191 263 SFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH- 339 (414)
Q Consensus 263 ~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~- 339 (414)
..|++++|++.|- +... ..+......+.+.|-...+...|++++-+.... +..|+....-|...|-+.|+-..|.+
T Consensus 536 ~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 4577788877776 5554 455666666777777778888888887665443 33466777777777777777776655
Q ss_pred ---------------------------hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHhhhhCCCC
Q 043191 340 ---------------------------YETVFLLFKRLNSTGLFPDLYTYNILINCFC-KIGRVSSGFVIFGRILPSCFT 391 (414)
Q Consensus 340 ---------------------------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~ 391 (414)
+++++.+|++..- ++|+..-|..+|..|. +.|++++|+.+++...++ +.
T Consensus 615 ~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fp 691 (840)
T KOG2003|consen 615 HYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FP 691 (840)
T ss_pred hhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-Cc
Confidence 2556667776543 5899999999887664 689999999999998875 67
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 043191 392 PDAVTFTSLIKILEINSF 409 (414)
Q Consensus 392 p~~~~~~~li~~~~~~g~ 409 (414)
-|.....-|++.+...|.
T Consensus 692 edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 692 EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cchHHHHHHHHHhccccc
Confidence 788888888888776664
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=5.2e-10 Score=101.00 Aligned_cols=250 Identities=16% Similarity=0.090 Sum_probs=188.3
Q ss_pred CCCCCHHhHHHHHHHHHhcCCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHH-HHhCCCCCCHhhHHHHHHHHHhcCCcc
Q 043191 65 ITSITPNEALCVFDYMLNMRPS-RPPVTSFNILFGCLAKTKHYDTVLSLFKR-LNLTGLFPDRYTYNILINCFCKMGRVS 142 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~~~~~ 142 (414)
+..+++++|.++|+.+.+..|. ..+.+.|.+.+..+-+.- ++..+.+ +... -+-...+|.++..+|.-.++.+
T Consensus 364 FEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~ 438 (638)
T KOG1126|consen 364 FELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHD 438 (638)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHH
Confidence 3556789999999999988775 357889998887664322 2222222 2222 1335789999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcCChHHHHHHHH
Q 043191 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT---LINGLCRTGHTIVALNLFE 219 (414)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---li~~~~~~g~~~~a~~~~~ 219 (414)
.|++.|++.++.+ +....+|+.+-.-+.....+|.|...|+... ..|...||+ |...|.+.++++.|+-.|+
T Consensus 439 ~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 439 TAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred HHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 9999999999875 3378889988888999999999999999887 456666655 6788999999999999999
Q ss_pred HHHcCCCCCCccccCchh-hHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhc
Q 043191 220 EMANGNGEFGVVCEPDAI-TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKI 296 (414)
Q Consensus 220 ~m~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~ 296 (414)
...+ +.|... ....+...+. ..+..++|+++++ .... +.++..---.+..+...
T Consensus 514 kA~~--------INP~nsvi~~~~g~~~~---------------~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 514 KAVE--------INPSNSVILCHIGRIQH---------------QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred hhhc--------CCccchhHHhhhhHHHH---------------HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 9998 445443 3333333332 3588999999998 4333 55555555567777888
Q ss_pred CChhHHHHHHHhchhCCCCC-CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCC
Q 043191 297 SKLKIARELFQSLPRAGLMP-NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355 (414)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~ 355 (414)
+++++|+..++++++. .| +...|..+...|.+.|+.+.|.. -|.-+.+..-
T Consensus 571 ~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~------~f~~A~~ldp 622 (638)
T KOG1126|consen 571 GRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALL------HFSWALDLDP 622 (638)
T ss_pred cchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHH------hhHHHhcCCC
Confidence 9999999999999885 44 45677778889999999999877 7777766533
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=3e-09 Score=89.59 Aligned_cols=201 Identities=11% Similarity=0.025 Sum_probs=154.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (414)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 345678888899999999999999999987653 2356778888889999999999999999998875 44667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCc-hhhHHHHHHH
Q 043191 168 KDLCAESRIMEAAALFTKLRVFGC-ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD-AITYSTIIDG 245 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~-~~~~~~li~~ 245 (414)
..+...|++++|.+.+++...... ......+..+..++...|++++|...+++..... |+ ...
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~------- 171 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--------PQRPES------- 171 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCChHH-------
Confidence 899999999999999999876432 2234567778888999999999999999988743 32 222
Q ss_pred HHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHH
Q 043191 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325 (414)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 325 (414)
+..+...+...|++++|...+++.... ...+...+..+.
T Consensus 172 ----------------------------------------~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~ 210 (234)
T TIGR02521 172 ----------------------------------------LLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGI 210 (234)
T ss_pred ----------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 223445566678899999999888765 233566677777
Q ss_pred HHHHhcCChhhhhhhhhHHHHHHHHHh
Q 043191 326 RGLCNDGQMDETKHYETVFLLFKRLNS 352 (414)
Q Consensus 326 ~~~~~~g~~~~a~~~~~a~~~~~~m~~ 352 (414)
..+...|+.++|.. +.+.+..
T Consensus 211 ~~~~~~~~~~~a~~------~~~~~~~ 231 (234)
T TIGR02521 211 RIARALGDVAAAQR------YGAQLQK 231 (234)
T ss_pred HHHHHHhhHHHHHH------HHHHHHh
Confidence 88888888888877 6666554
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=5e-09 Score=90.78 Aligned_cols=188 Identities=10% Similarity=-0.022 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh
Q 043191 196 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275 (414)
Q Consensus 196 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 275 (414)
.|..++.+-|.-.++.++|...|+...+-+ +-....|+.+-+-|.. ......|.+.++
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-------p~~~~aWTLmGHEyvE---------------mKNt~AAi~sYR 388 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-------PKYLSAWTLMGHEYVE---------------MKNTHAAIESYR 388 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-------cchhHHHHHhhHHHHH---------------hcccHHHHHHHH
Confidence 344555666777788999999999999844 2344566666666655 366777777777
Q ss_pred -hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC
Q 043191 276 -LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353 (414)
Q Consensus 276 -~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~ 353 (414)
.... +.|-..|-.|..+|.-.+.+.-|+-.|++.....+. |...|.+|-++|.+.++.++|.+ -|......
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiK------Cykrai~~ 461 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIK------CYKRAILL 461 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHH------HHHHHHhc
Confidence 5555 677889999999999999999999999998876433 78999999999999999999998 99999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCC--HHHHHHHHHHHHHcCCcccc
Q 043191 354 GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS----CFTPD--AVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 354 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~a 413 (414)
|-. +...+..|.+.|-+.++.++|.+.|++.++. |..-+ .....-|..-+.+.+++++|
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 643 6688999999999999999999999887763 33222 12222266777788888876
No 49
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.25 E-value=4.3e-08 Score=91.82 Aligned_cols=284 Identities=11% Similarity=0.072 Sum_probs=193.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 043191 98 GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177 (414)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 177 (414)
..+...|++++|.+++.+..+.. +.+...|.+|...|-..|+.+++...+-..--.. +-|...|..+.....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 33444599999999999998763 3477889999999999999999988776554443 557789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHH----HHHHHhhcCCC
Q 043191 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI----IDGLCKEAGSA 253 (414)
Q Consensus 178 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~l----i~~~~~~~~~~ 253 (414)
+|.-+|.+..+.. +++...+---+..|-+.|+...|...|.++.... -..|..-+..+ ++.+...
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~------p~~d~er~~d~i~~~~~~~~~~---- 293 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD------PPVDIERIEDLIRRVAHYFITH---- 293 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHh----
Confidence 9999999999875 4555555566778899999999999999999854 11122222222 2222222
Q ss_pred chhHHHHHhhccchhhHhhhhh-hhh---hccccccHHHHHHHHHhcCChhHHHHHHHhchh------------------
Q 043191 254 NFLGFSCMASFSALNKMAFYFP-LVR---VQCLCLNFLCLIDGLCKISKLKIARELFQSLPR------------------ 311 (414)
Q Consensus 254 ~~~~~~~~~~~~~~~~a~~~~~-~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~------------------ 311 (414)
++-+.|.+.+. ... ...+...++.++..|.+..+++.|......+..
T Consensus 294 -----------~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~ 362 (895)
T KOG2076|consen 294 -----------NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE 362 (895)
T ss_pred -----------hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence 22233333333 111 133344455555555555555555554444433
Q ss_pred -------------------------------------------CC--CCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHH
Q 043191 312 -------------------------------------------AG--LMPNVVTYNILIRGLCNDGQMDETKHYETVFLL 346 (414)
Q Consensus 312 -------------------------------------------~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~ 346 (414)
.. +.-+...|.-+..+|.+.|++.+|.. +
T Consensus 363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~------~ 436 (895)
T KOG2076|consen 363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALR------L 436 (895)
T ss_pred cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHH------H
Confidence 22 11133445666677777777777777 8
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHHcCCcccc
Q 043191 347 FKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP-DAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 347 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a 413 (414)
+..+.....--+...|-.+..+|...|..++|.+.|+..+.. .| +...-.+|...+.+.|+.++|
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKA 502 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHH
Confidence 888887654446778888888888888888888888888874 33 345556677778888888765
No 50
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.25 E-value=6.1e-09 Score=98.04 Aligned_cols=331 Identities=13% Similarity=0.090 Sum_probs=183.9
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcC--
Q 043191 63 GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMG-- 139 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~-- 139 (414)
.....|+++.|...|....+..+ ..-+..+--|.+.+.+.|+.+.+...|+...+. .| +..|...|...|+..+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~-d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADN-DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCC-CCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhh
Confidence 44567888888888887777654 222455566778888888888888888887765 33 4556666666666553
Q ss_pred --CcchHHHHHHHHHHcC-------------------------------------CCCCHHhHHHHHHHHHhcCCHHHHH
Q 043191 140 --RVSHGFVVLGRILRSC-------------------------------------FTPDAVTFTSLIKDLCAESRIMEAA 180 (414)
Q Consensus 140 --~~~~a~~~~~~~~~~~-------------------------------------~~~~~~~~~~li~~~~~~g~~~~a~ 180 (414)
..+.|..++....+.- -.+.+...|.+...+...|++++|.
T Consensus 393 ~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 2344444444433332 2233444444444444445555555
Q ss_pred HHHHHHHHc---CCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhh-HHHHHHHHHhh-
Q 043191 181 ALFTKLRVF---GCELDV------FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT-YSTIIDGLCKE- 249 (414)
Q Consensus 181 ~~~~~m~~~---g~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~-~~~li~~~~~~- 249 (414)
..|+..... ...+|. .+--.+...+-..++.+.|.+.|..+.... |+-.. |..+. +..+.
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--------p~YId~ylRl~-~ma~~k 543 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--------PGYIDAYLRLG-CMARDK 543 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--------chhHHHHHHhh-HHHHhc
Confidence 555444332 011111 011112222223334444444444444421 22111 11111 11100
Q ss_pred cC-----------------CCchhHHHH--HhhccchhhHhhhhh-hhhh---ccccccHHHHHHHHHh-----------
Q 043191 250 AG-----------------SANFLGFSC--MASFSALNKMAFYFP-LVRV---QCLCLNFLCLIDGLCK----------- 295 (414)
Q Consensus 250 ~~-----------------~~~~~~~~~--~~~~~~~~~a~~~~~-~~~~---~~~~~~~~~li~~~~~----------- 295 (414)
+. .+++.++.. .+....+..+.+-|. .... .+|+.+.-+|.+.|.+
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 00 223322222 113333344444333 1111 2333444444444322
Q ss_pred -cCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043191 296 -ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR 374 (414)
Q Consensus 296 -~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 374 (414)
.+..++|+++|.+..+.... |...-|-+--.++..|++.+|.. +|.+..+.... +..+|-.+.++|..+|+
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~d------IFsqVrEa~~~-~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARD------IFSQVREATSD-FEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHH------HHHHHHHHHhh-CCceeeeHHHHHHHHHH
Confidence 23467788888887776544 66666777778888888888888 88888876432 45677788888889999
Q ss_pred HHHHHHHHHhhhhC-CCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 375 VSSGFVIFGRILPS-CFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 375 ~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
+..|+++|+...+. .-.-+..+...|.+++.+.|++.+|
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 99999998887765 3345678888888888888887664
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=1.8e-08 Score=95.60 Aligned_cols=231 Identities=12% Similarity=0.031 Sum_probs=163.7
Q ss_pred CCHhhHHHHHHHHHhc-----CCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHH---------hcCCHHHHHHHHHHHHH
Q 043191 123 PDRYTYNILINCFCKM-----GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC---------AESRIMEAAALFTKLRV 188 (414)
Q Consensus 123 p~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~ 188 (414)
.+...|...+++-... +++++|.++|++..+.. +-+...|..+..++. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 4556666666553221 34678999999998874 334556666655544 23458999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCc-hhhHHHHHHHHHhhcCCCchhHHHHHhhccch
Q 043191 189 FGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD-AITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267 (414)
Q Consensus 189 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~ 267 (414)
.. +-+...+..+...+...|++++|...|++..+. .|+ ...+..+...+.. .|+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~---------------~G~~ 388 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFM---------------AGQL 388 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH---------------CCCH
Confidence 75 446788888889999999999999999999984 455 4455556555555 4789
Q ss_pred hhHhhhhh-hhhhccccc-cHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHH
Q 043191 268 NKMAFYFP-LVRVQCLCL-NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345 (414)
Q Consensus 268 ~~a~~~~~-~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~ 345 (414)
++|...++ ..+..|+.. .+..++..+...|++++|...+++.......-+...+..+..++...|++++|..
T Consensus 389 ~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~------ 462 (553)
T PRK12370 389 EEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARK------ 462 (553)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHH------
Confidence 99999998 666666543 3344455677789999999999998765322245556777788889999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 346 LFKRLNSTGLFPD-LYTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 346 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
.+.++... .|+ ....+.+...|+..| ++|...++.+.+.
T Consensus 463 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 463 LTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 88887654 334 334455556667777 4788877777654
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=9e-08 Score=83.78 Aligned_cols=335 Identities=11% Similarity=0.092 Sum_probs=188.6
Q ss_pred hhcCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHH
Q 043191 58 KSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD-RYTYNILINCFC 136 (414)
Q Consensus 58 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~ 136 (414)
+.......++|++++|++.+.+.....| ..+..|.....+|...|+|+++.+.-.+..+. .|+ +..+..-.+++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p--~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCP--DEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCC--CCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 3445677899999999999999998754 22788999999999999999988877666554 444 223444444555
Q ss_pred hcCCcchHHH----------------------HHHH---------HHHcC--CCCCHHhHHHHHHHHHhc----------
Q 043191 137 KMGRVSHGFV----------------------VLGR---------ILRSC--FTPDAVTFTSLIKDLCAE---------- 173 (414)
Q Consensus 137 ~~~~~~~a~~----------------------~~~~---------~~~~~--~~~~~~~~~~li~~~~~~---------- 173 (414)
..|++++|+. ++.. +.+.+ +-|+....++....+...
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 5555554432 1111 11011 223333222222221110
Q ss_pred ---------------C---CHHHHHHHHHHHHH---cCCCCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 174 ---------------S---RIMEAAALFTKLRV---FGCELD---------VFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 174 ---------------g---~~~~a~~~~~~m~~---~g~~~~---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+ .+..|...+.+-.. .....+ ..+...-..-+.-.|+.-.|..-|+....
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0 11122211111100 000001 11111111222334555555555555554
Q ss_pred CCCCCCccccCchhh-HHHHHHHHHhhcC-----------------CCchhHH--HHHhhccchhhHhhhhh-hhhh-cc
Q 043191 224 GNGEFGVVCEPDAIT-YSTIIDGLCKEAG-----------------SANFLGF--SCMASFSALNKMAFYFP-LVRV-QC 281 (414)
Q Consensus 224 ~~~~~~~~~~p~~~~-~~~li~~~~~~~~-----------------~~~~~~~--~~~~~~~~~~~a~~~~~-~~~~-~~ 281 (414)
.. |.... |.-+-..|....+ .+++... ...+-.+++++|..-|+ ..+. +.
T Consensus 355 l~--------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe 426 (606)
T KOG0547|consen 355 LD--------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE 426 (606)
T ss_pred cC--------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 22 11111 3333333333222 1111111 11114577888888888 5555 44
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC-----CCC
Q 043191 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST-----GLF 356 (414)
Q Consensus 282 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~-----~~~ 356 (414)
+...|-.+..+.-+.+++++++..|++.++. .+-.+..|+.....+...++++.|.+ .|+..++. ++.
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k------~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVK------QYDKAIELEPREHLII 499 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHH------HHHHHHhhcccccccc
Confidence 5667777777778899999999999998876 33367899999999999999999988 78877764 121
Q ss_pred CCHHH--HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 357 PDLYT--YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 357 p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
.+... .-.++..- -.+++..|..++++.++.+-+ ....|.+|...-.+.|+.++|
T Consensus 500 v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred ccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHH
Confidence 22222 22222221 238888899998888875322 346678888888888888776
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=4.9e-08 Score=83.32 Aligned_cols=251 Identities=9% Similarity=0.040 Sum_probs=178.8
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
..|+.+.|-+.+.+..+..+ .++...+-+..+.....|++..|..-+.++.+.+- -+........++|.+.|++....
T Consensus 130 qrgd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll 207 (400)
T COG3071 130 QRGDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALL 207 (400)
T ss_pred hcccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHH
Confidence 56889999999999988755 67788888889999999999999999999887752 36778899999999999999999
Q ss_pred HHHHHHHHcCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043191 146 VVLGRILRSCFTPDA-------VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 218 (414)
.++..+.+.|.--+. .+|+.+++-....+..+.-...++..... .+.+...-..++.-+.+.|+.++|.++.
T Consensus 208 ~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i 286 (400)
T COG3071 208 AILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEII 286 (400)
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHH
Confidence 999999999865554 46777888777777777766777776543 2456667778888899999999999999
Q ss_pred HHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCC
Q 043191 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298 (414)
Q Consensus 219 ~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~ 298 (414)
++..+++ ..|....+ +. +.+.++
T Consensus 287 ~~~Lk~~------~D~~L~~~---~~------------------------------------------------~l~~~d 309 (400)
T COG3071 287 EDALKRQ------WDPRLCRL---IP------------------------------------------------RLRPGD 309 (400)
T ss_pred HHHHHhc------cChhHHHH---Hh------------------------------------------------hcCCCC
Confidence 9998877 45552211 11 112244
Q ss_pred hhHHHHHHHhch-hCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043191 299 LKIARELFQSLP-RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377 (414)
Q Consensus 299 ~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 377 (414)
.+.-++..++-. ..+. ++..+..|-..|.+.+.+.+|.. .|+...+. .|+..+|+.+.+++.+.|+..+
T Consensus 310 ~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~------~leaAl~~--~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 310 PEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASE------ALEAALKL--RPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred chHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHH------HHHHHHhc--CCChhhHHHHHHHHHHcCChHH
Confidence 444444443322 2222 23455556666666666666666 66644433 5666666666666666666666
Q ss_pred HHHHHHhhh
Q 043191 378 GFVIFGRIL 386 (414)
Q Consensus 378 a~~~~~~m~ 386 (414)
|.++.++..
T Consensus 380 A~~~r~e~L 388 (400)
T COG3071 380 AEQVRREAL 388 (400)
T ss_pred HHHHHHHHH
Confidence 666666554
No 54
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=3.4e-08 Score=90.96 Aligned_cols=292 Identities=13% Similarity=0.034 Sum_probs=190.6
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-hc-----C
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC-KM-----G 139 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~-----~ 139 (414)
..|++++|++.++.....-+ ............+.+.|+.++|..++..+.+. .|+...|...+..+. .. .
T Consensus 16 e~g~~~~AL~~L~~~~~~I~--Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQIL--DKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HCCCHHHHHHHHHhhhhhCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccc
Confidence 45899999999987655432 44556678888899999999999999999887 466665544444433 22 2
Q ss_pred CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043191 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM-EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 218 (414)
+.+...++|+.+... -|.......+.-.+.....+. .+..++..+...|+++ +|+.|-..|.......-..+++
T Consensus 92 ~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 456667788877665 244433333332333322332 4556667777778643 4555555566555555555666
Q ss_pred HHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhcccc--ccHHHHHHHHHhc
Q 043191 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC--LNFLCLIDGLCKI 296 (414)
Q Consensus 219 ~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~li~~~~~~ 296 (414)
..+.......+. +..+. ......|++ +++..+...|...
T Consensus 167 ~~~~~~l~~~~~-~~~~~--------------------------------------~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 167 EEYVNSLESNGS-FSNGD--------------------------------------DEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHhhcccCC-CCCcc--------------------------------------ccccCCchHHHHHHHHHHHHHHHh
Confidence 655543210000 00000 000012332 2345567778889
Q ss_pred CChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043191 297 SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376 (414)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 376 (414)
|++++|++++++.+++... .+..|..-...+-+.|++.+|.. .++........ |...=+..+..+.+.|+++
T Consensus 208 g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~------~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAE------AMDEARELDLA-DRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred CCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHH------HHHHHHhCChh-hHHHHHHHHHHHHHCCCHH
Confidence 9999999999998886432 36788888889999999999988 88888887554 7777788888899999999
Q ss_pred HHHHHHHhhhhCCCCCCHHHH--------HHHHHHHHHcCCcccc
Q 043191 377 SGFVIFGRILPSCFTPDAVTF--------TSLIKILEINSFFRQV 413 (414)
Q Consensus 377 ~a~~~~~~m~~~g~~p~~~~~--------~~li~~~~~~g~~~~a 413 (414)
+|.+++....+.+..|-...+ .....+|.+.|++..|
T Consensus 280 ~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 280 EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999887754443222 4466778888877654
No 55
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.18 E-value=1.9e-08 Score=94.80 Aligned_cols=212 Identities=11% Similarity=0.024 Sum_probs=135.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCC
Q 043191 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253 (414)
Q Consensus 174 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 253 (414)
+...+|...+....... ..+...+..+...+.+...+..|.+-|+...+.-. ..+|..+...|-+.|...-..+
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~-----~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTS-----TKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhc-----cCCchhHHHHhhHHHHHHhccc
Confidence 44444444444444322 22333344444445555555555554444443221 2234444444444332221100
Q ss_pred chhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhc
Q 043191 254 NFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331 (414)
Q Consensus 254 ~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 331 (414)
.... ....+..++|.+.+. ..+. +.|.+.-|.+.-.++..|++++|..+|.+..+.... +..+|-.+..+|...
T Consensus 618 ~rn~---ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 618 SRNP---EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQ 693 (1018)
T ss_pred ccCh---HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHH
Confidence 0000 114566788888888 5544 677888888999999999999999999999987543 556788899999999
Q ss_pred CChhhhhhhhhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHH
Q 043191 332 GQMDETKHYETVFLLFKRLNST-GLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401 (414)
Q Consensus 332 g~~~~a~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 401 (414)
|++..|.+ +|+...+. .-.-+......|.+++...|++.+|.+.+-........-....||..+
T Consensus 694 ~qy~~AIq------mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 694 GQYRLAIQ------MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHH------HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 99999988 88887764 334467888999999999999999999988887754433345555443
No 56
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.17 E-value=3.7e-07 Score=82.84 Aligned_cols=306 Identities=13% Similarity=0.041 Sum_probs=199.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a 144 (414)
+.+.++-|..+|....+..+ -+...|......--..|..+....+|++.... .| ....|-...+.+-..|+...|
T Consensus 528 k~~~~~carAVya~alqvfp--~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQVFP--CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred hcchHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHH
Confidence 34455556666665555544 44455555555555566666666777766654 33 333445555566667888888
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
..++....+.. +-+...|-+.+.......++++|..+|.+.... .|+..+|.--+..---.+..++|.+++++..+.
T Consensus 604 r~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 604 RVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 88888877764 336677777888888888888888888887764 567777766666666667788888888887773
Q ss_pred CCCCCccccCchhhHH-HHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhH
Q 043191 225 NGEFGVVCEPDAITYS-TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKI 301 (414)
Q Consensus 225 ~~~~~~~~~p~~~~~~-~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~ 301 (414)
-|+-.-+- .+-+.+- +.++++.|...+. -.+. +.....|..+...=-+.|++-.
T Consensus 681 --------fp~f~Kl~lmlGQi~e---------------~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 681 --------FPDFHKLWLMLGQIEE---------------QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred --------CCchHHHHHHHhHHHH---------------HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence 45543332 2222222 2455666666655 3333 4445566666666667777777
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh----CC-----------------------
Q 043191 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS----TG----------------------- 354 (414)
Q Consensus 302 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~----~~----------------------- 354 (414)
|..++++....+.. |...|-..|+.=.+.|+.+.|.. ++.+..+ .|
T Consensus 738 AR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~------lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 738 ARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAEL------LMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred HHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHH------HHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 77777777666554 66777777777777777777665 3333222 11
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCC
Q 043191 355 --LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409 (414)
Q Consensus 355 --~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 409 (414)
..-|+...-.+...+....++++|.+.|.+.++.+ .-.-.+|.-+...+.++|.
T Consensus 811 kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCC
Confidence 23466666677777888889999999999999864 2245788888888888884
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=2.3e-08 Score=91.03 Aligned_cols=241 Identities=18% Similarity=0.160 Sum_probs=165.0
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHHc-----CC-CCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--
Q 043191 125 RYTYNILINCFCKMGRVSHGFVVLGRILRS-----CF-TPDAV-TFTSLIKDLCAESRIMEAAALFTKLRVF-----G-- 190 (414)
Q Consensus 125 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-- 190 (414)
..+...+...|...|+++.|..++++.++. |. .|... ..+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666889999999999999999988765 21 23332 3445777899999999999999988652 3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhh-HHHHHHHHHhhcCCCchhHHHHHhhccchhh
Q 043191 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT-YSTIIDGLCKEAGSANFLGFSCMASFSALNK 269 (414)
Q Consensus 191 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~-~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
.+.-..+++.|..+|.+.|++++|...++...+--........|...+ ++.+...++. .+.+++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~---------------~~~~Ee 343 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS---------------MNEYEE 343 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH---------------hcchhH
Confidence 122345778888899999999888777766554210000002333333 3333344444 355666
Q ss_pred Hhhhhh-hhhh--------c-cccccHHHHHHHHHhcCChhHHHHHHHhchhC-----C-CCC-CHhhHHHHHHHHHhcC
Q 043191 270 MAFYFP-LVRV--------Q-CLCLNFLCLIDGLCKISKLKIARELFQSLPRA-----G-LMP-NVVTYNILIRGLCNDG 332 (414)
Q Consensus 270 a~~~~~-~~~~--------~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~~~~~li~~~~~~g 332 (414)
+..+++ ..+. . ....+++.|...|.+.|++++|.++|++.... | ..+ ....++.+-..|.+.+
T Consensus 344 a~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k 423 (508)
T KOG1840|consen 344 AKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK 423 (508)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc
Confidence 666655 3222 1 22456888999999999999999999987532 1 122 2456788888999999
Q ss_pred ChhhhhhhhhHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 043191 333 QMDETKHYETVFLLFKRLNS----TGL-FPD-LYTYNILINCFCKIGRVSSGFVIFGRIL 386 (414)
Q Consensus 333 ~~~~a~~~~~a~~~~~~m~~----~~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 386 (414)
++.+|.+ +|.+... .|. .|+ ..+|..|...|...|+++.|+++.+...
T Consensus 424 ~~~~a~~------l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 424 KYEEAEQ------LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ccchHHH------HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9988877 5544332 222 233 5689999999999999999999988876
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=3.3e-07 Score=80.09 Aligned_cols=118 Identities=13% Similarity=0.078 Sum_probs=67.1
Q ss_pred ccchhhHhhhhh-hhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhh
Q 043191 264 FSALNKMAFYFP-LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYET 342 (414)
Q Consensus 264 ~~~~~~a~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 342 (414)
..++..|.+++. ..+..|-..+|...|..=.+.++++.+..+|++..+.++. |..+|.-....=...|+.+.|..
T Consensus 417 q~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRa--- 492 (677)
T KOG1915|consen 417 QLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARA--- 492 (677)
T ss_pred HcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHH---
Confidence 344444444444 4444555555555555556666666666666666665443 55556555555556666666666
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 343 VFLLFKRLNSTG-LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 343 a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
+|.-.++.. +......|...|+.=...|.++.|..+++++++.
T Consensus 493 ---ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 493 ---IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred ---HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 666665531 1222344555555556667777777777776664
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=8.8e-09 Score=85.42 Aligned_cols=227 Identities=13% Similarity=0.003 Sum_probs=143.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHH
Q 043191 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY-NTLINGLC 206 (414)
Q Consensus 128 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~ 206 (414)
-+.+.++|.+.|.+.+|.+-++.-++. .|-+.||-.|-++|.+..+.+.|+.++.+-.+. .|-.+|| .-+.+.+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 356778888888888888888777766 566777888888888888888888888877765 4555554 34667777
Q ss_pred hcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccc
Q 043191 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCL 284 (414)
Q Consensus 207 ~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~ 284 (414)
..++.++|.++++...+.. ..++.....+...|.- .++.+-|...++ +... ..+..
T Consensus 302 am~~~~~a~~lYk~vlk~~-------~~nvEaiAcia~~yfY---------------~~~PE~AlryYRRiLqmG~~spe 359 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-------PINVEAIACIAVGYFY---------------DNNPEMALRYYRRILQMGAQSPE 359 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-------Cccceeeeeeeecccc---------------CCChHHHHHHHHHHHHhcCCChH
Confidence 7788888888888887744 2223332222222222 244555555555 3333 44555
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHhchhCCCCCC--HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHH
Q 043191 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPN--VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362 (414)
Q Consensus 285 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~ 362 (414)
.|+.+.-+|.-.+++|-++--|++....--.|+ ...|-.+-......|++..|.+ .|+-....+-. +...+
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~r------cfrlaL~~d~~-h~eal 432 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR------CFRLALTSDAQ-HGEAL 432 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHH------HHHHHhccCcc-hHHHH
Confidence 566666666666777776666666554333232 2344445555666677666666 66666654322 34566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 363 NILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 363 ~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
+.|.-.-.+.|++++|..+++....
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhh
Confidence 6666666677777777777776655
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=9.5e-09 Score=85.23 Aligned_cols=226 Identities=14% Similarity=0.013 Sum_probs=183.5
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCc
Q 043191 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235 (414)
Q Consensus 156 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~ 235 (414)
...|-.--+-+.++|.+.|.+.+|.+.|+.-.+. .|-..||-.|-++|.+..++..|+.+|.+-.+ ..|-
T Consensus 219 ~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--------~fP~ 288 (478)
T KOG1129|consen 219 CTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--------SFPF 288 (478)
T ss_pred chHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--------cCCc
Confidence 3334444567889999999999999999988776 56788899999999999999999999999987 5677
Q ss_pred hhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCC
Q 043191 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313 (414)
Q Consensus 236 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 313 (414)
.+||..=+.-... ..+..+++.++++ ..+. ..++....++...|.-.++++-|+.+|+++.+.|
T Consensus 289 ~VT~l~g~ARi~e--------------am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 289 DVTYLLGQARIHE--------------AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred hhhhhhhhHHHHH--------------HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 7776543322211 3578889999998 4444 6668888888899999999999999999999999
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC
Q 043191 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD--LYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391 (414)
Q Consensus 314 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 391 (414)
+. ++..|+.+--+|.-.++++-++. -|.+....--.|+ ...|..+-......||+..|.+.|+-.+..+ .
T Consensus 355 ~~-speLf~NigLCC~yaqQ~D~~L~------sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~ 426 (478)
T KOG1129|consen 355 AQ-SPELFCNIGLCCLYAQQIDLVLP------SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-A 426 (478)
T ss_pred CC-ChHHHhhHHHHHHhhcchhhhHH------HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-c
Confidence 88 88899999999999999988877 7887776544454 3568778777888999999999999988764 2
Q ss_pred CCHHHHHHHHHHHHHcCCcccc
Q 043191 392 PDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 392 p~~~~~~~li~~~~~~g~~~~a 413 (414)
-+...++.|.-.-.+.|++++|
T Consensus 427 ~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHH
Confidence 3578899998888999998876
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=2e-07 Score=81.11 Aligned_cols=231 Identities=10% Similarity=-0.014 Sum_probs=155.3
Q ss_pred CCHHhHHHHHHHHHhcCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 68 ITPNEALCVFDYMLNMRPSRP--PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
+..+.++.-+..+....+..| ....|..+...+.+.|++++|...|++..+.. +.+...|+.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455777777777775443222 24568888888999999999999999988763 236788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
+.|+...+.. +-+..+|..+..++...|++++|.+.|++..+. .|+..........+...+++++|...|.+.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999999864 335677888888899999999999999998876 3443322222333456778999999997765432
Q ss_pred CCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHH
Q 043191 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIAR 303 (414)
Q Consensus 226 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~ 303 (414)
.|+...+ .+...+ .|+.... ..++.+.+.++ .... +.....|..+...+.+.|++++|.
T Consensus 196 -------~~~~~~~-~~~~~~--lg~~~~~---------~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 196 -------DKEQWGW-NIVEFY--LGKISEE---------TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred -------CccccHH-HHHHHH--ccCCCHH---------HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 2332222 222211 1111000 01111111111 1111 223457888999999999999999
Q ss_pred HHHHhchhCCCCCCHhhHH
Q 043191 304 ELFQSLPRAGLMPNVVTYN 322 (414)
Q Consensus 304 ~~~~~m~~~g~~p~~~~~~ 322 (414)
..|++..+.++ ||..-+.
T Consensus 257 ~~~~~Al~~~~-~~~~e~~ 274 (296)
T PRK11189 257 ALFKLALANNV-YNFVEHR 274 (296)
T ss_pred HHHHHHHHhCC-chHHHHH
Confidence 99999987653 2444443
No 62
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=6.5e-08 Score=83.89 Aligned_cols=237 Identities=12% Similarity=0.039 Sum_probs=124.5
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHH
Q 043191 69 TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148 (414)
Q Consensus 69 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 148 (414)
++.+|.+.-+.....+ +-+..+...-.......|++++|.+.+++.....-.-....|| +.-.+-..|++++|+..|
T Consensus 471 ~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f 547 (840)
T KOG2003|consen 471 DFADAQQYADIALNID--RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCF 547 (840)
T ss_pred chhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHH
Confidence 4455555555444332 1233333223333344566666666666555432111111222 222344555666666665
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC
Q 043191 149 GRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 228 (414)
Q Consensus 149 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 228 (414)
-++... +.-+..+.-.+.+.|-...+...|++++-+.... ++.|..+...|...|-+.|+-..|++.+-+--.-
T Consensus 548 ~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry---- 621 (840)
T KOG2003|consen 548 LKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY---- 621 (840)
T ss_pred HHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc----
Confidence 555432 1224455555555565556666666655544322 2344555555666666666666665554332221
Q ss_pred CccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhccccccHHHHHHHH-HhcCChhHHHHHH
Q 043191 229 GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQCLCLNFLCLIDGL-CKISKLKIARELF 306 (414)
Q Consensus 229 ~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~li~~~-~~~~~~~~a~~~~ 306 (414)
++-+..+...|..-|.. ..-++++...|+ ..-..|+..-|..+|..| .+.|++.+|+++|
T Consensus 622 ---fp~nie~iewl~ayyid---------------tqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 622 ---FPCNIETIEWLAAYYID---------------TQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred ---cCcchHHHHHHHHHHHh---------------hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 23333343333333322 234455555555 333355655665555433 4679999999999
Q ss_pred HhchhCCCCCCHhhHHHHHHHHHhcCC
Q 043191 307 QSLPRAGLMPNVVTYNILIRGLCNDGQ 333 (414)
Q Consensus 307 ~~m~~~g~~p~~~~~~~li~~~~~~g~ 333 (414)
+.+.+. ..-|..+...|++.+...|.
T Consensus 684 k~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 684 KDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHh-CccchHHHHHHHHHhccccc
Confidence 998776 44588899999998888875
No 63
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=1.2e-07 Score=82.50 Aligned_cols=227 Identities=13% Similarity=0.025 Sum_probs=151.4
Q ss_pred CChhHHHHHHHHHHhCC-CCCC--HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 043191 104 KHYDTVLSLFKRLNLTG-LFPD--RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180 (414)
Q Consensus 104 ~~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 180 (414)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45677778887777542 2232 3557778888999999999999999998875 457889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHH
Q 043191 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260 (414)
Q Consensus 181 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 260 (414)
+.|++..+.. +-+..+|..+..++...|++++|.+.|+...+. .|+... ..+..
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--------~P~~~~-~~~~~---------------- 172 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--------DPNDPY-RALWL---------------- 172 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHH----------------
Confidence 9999998764 335778888889999999999999999999874 444321 11100
Q ss_pred HhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhh
Q 043191 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340 (414)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 340 (414)
..+...++.++|...|++..... .|+. |. ........|+...+ .
T Consensus 173 ------------------------------~l~~~~~~~~~A~~~l~~~~~~~-~~~~--~~-~~~~~~~lg~~~~~-~- 216 (296)
T PRK11189 173 ------------------------------YLAESKLDPKQAKENLKQRYEKL-DKEQ--WG-WNIVEFYLGKISEE-T- 216 (296)
T ss_pred ------------------------------HHHHccCCHHHHHHHHHHHHhhC-Cccc--cH-HHHHHHHccCCCHH-H-
Confidence 01122367888888886544321 2222 22 11223335555443 2
Q ss_pred hhHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHH
Q 043191 341 ETVFLLFKRLNST---GL--FP-DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399 (414)
Q Consensus 341 ~~a~~~~~~m~~~---~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 399 (414)
.+..+.+. .. .| ....|..+...+.+.|++++|...|++.++.+ .||..-+..
T Consensus 217 -----~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 217 -----LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred -----HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 23333321 11 11 23567788888888899999999988888754 235444444
No 64
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.06 E-value=2.5e-06 Score=77.72 Aligned_cols=328 Identities=10% Similarity=-0.014 Sum_probs=183.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH----HHhCCCCCCHhhHHHHHHHHHhcCCc
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKR----LNLTGLFPDRYTYNILINCFCKMGRV 141 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~~~~~li~~~~~~~~~ 141 (414)
+-..++.|..+++...+.-| .+...|-+-...--.+|+.+.+.+++.+ +...|+..+...|-.=...|-..|..
T Consensus 418 rLetYenAkkvLNkaRe~ip--td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREIIP--TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHhhCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 33445566666666655543 4555555555555556666666665554 33456666666665555555555655
Q ss_pred chHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043191 142 SHGFVVLGRILRSCFTP--DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 219 (414)
-.+..+....+..|+.- -..||+.-...|.+.+.++-|..+|....+-- +.+...|......=-..|..++...+|+
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 55556665555555432 12455555556666666666666666655432 3344455555544445566666666666
Q ss_pred HHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCch-----------------hHHHH--HhhccchhhHhhhhh-hhhh
Q 043191 220 EMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANF-----------------LGFSC--MASFSALNKMAFYFP-LVRV 279 (414)
Q Consensus 220 ~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~-----------------~~~~~--~~~~~~~~~a~~~~~-~~~~ 279 (414)
+....- +-....|....+.+-..|+.+.+ ..... ......++.|..++. ....
T Consensus 575 kav~~~-------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 575 KAVEQC-------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHhC-------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 666532 22222222222223333332211 11111 114566677777776 4444
Q ss_pred ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCC-HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCC
Q 043191 280 QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN-VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358 (414)
Q Consensus 280 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~ 358 (414)
.++...|.--+..---.+..++|.+++++..+. .|+ ...|-.+-+.+-+.++++.|.. .|..-.+. ++-.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~------aY~~G~k~-cP~~ 718 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMARE------AYLQGTKK-CPNS 718 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHH------HHHhcccc-CCCC
Confidence 666666666666666667777777777766553 233 3445555556666666666655 44433322 2223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 359 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
+..|-.|.+.=-+.|.+-.|..++++..-++-+ +...|-..|+.=.+.|+.+.|
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHH
Confidence 445666666666777888888888877766432 667788888888888877665
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.04 E-value=6.7e-08 Score=88.09 Aligned_cols=241 Identities=17% Similarity=0.137 Sum_probs=162.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC-Ccc
Q 043191 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVF-----GC-ELDVF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEF-GVV 231 (414)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~ 231 (414)
..+...|...|...|+++.|..++++..+. |. .|... ..+.+...|...+++++|..+|+++...-... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677999999999999999999887654 21 22322 34457778899999999999999987532100 011
Q ss_pred ccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-cccc-ccHHHHHHHHHhcCChhHHHHHHHh
Q 043191 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLC-LNFLCLIDGLCKISKLKIARELFQS 308 (414)
Q Consensus 232 ~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~ 308 (414)
.+--..++..|-.+|++.|+..++..+ .+.|.+++. .... .+.+ ..++.+...|+..+++++|..+++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~--------~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEY--------CERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHH--------HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 122235666677778776543333222 233333333 1111 2222 2256678888999999999999987
Q ss_pred chhC---CCCCC----HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCC
Q 043191 309 LPRA---GLMPN----VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST-------GLFPDLYTYNILINCFCKIGR 374 (414)
Q Consensus 309 m~~~---g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~g~ 374 (414)
..+. -+.++ ..+++.|-..|...|++++|++ ++++.+.. ...-....++.+...|.+.++
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~------~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE------LYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH------HHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 5331 12222 4689999999999999999998 66665542 122224577888899999999
Q ss_pred HHHHHHHHHhhhhC----CC-CCC-HHHHHHHHHHHHHcCCccccC
Q 043191 375 VSSGFVIFGRILPS----CF-TPD-AVTFTSLIKILEINSFFRQVA 414 (414)
Q Consensus 375 ~~~a~~~~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~a~ 414 (414)
.++|.++|.+.... |. .|+ ..+|..|...|.+.|++++|+
T Consensus 425 ~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 99999999876532 21 233 478999999999999999873
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=8.7e-07 Score=79.17 Aligned_cols=286 Identities=13% Similarity=0.081 Sum_probs=210.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (414)
.++.....-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++.+. .+-...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 344555556666777889999999999877652 445566666677888888888877777777776 355778899998
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHH
Q 043191 168 KDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~ 247 (414)
--|.-.|...+|.+.|.+..... +.-...|-.....|+-.|..|+|+..+...-+--.. -..|... .. --|
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G---~hlP~LY--lg--mey- 390 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG---CHLPSLY--LG--MEY- 390 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC---CcchHHH--HH--HHH-
Confidence 88888899999999998876543 223568888899999999999999888776652100 0122221 11 111
Q ss_pred hhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhC--CCC----CCHh
Q 043191 248 KEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRA--GLM----PNVV 319 (414)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~----p~~~ 319 (414)
...+..+.|.+.|. .... +.++...+-+.-..-..+.+.+|..+|+..... .+. --..
T Consensus 391 --------------~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p 456 (611)
T KOG1173|consen 391 --------------MRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP 456 (611)
T ss_pred --------------HHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH
Confidence 13477888888888 4444 556777777777777788999999999876521 011 1334
Q ss_pred hHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHH
Q 043191 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399 (414)
Q Consensus 320 ~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 399 (414)
+++.|-.+|.+.+.+++|+. .+++.....- -|..++.++.-.|...|+++.|...|.+.+- +.|+-.+-..
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~------~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~ 527 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAID------YYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISE 527 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHH------HHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHH
Confidence 57888889999999999888 8999887643 3889999999999999999999999999886 6888888787
Q ss_pred HHHHHHHc
Q 043191 400 LIKILEIN 407 (414)
Q Consensus 400 li~~~~~~ 407 (414)
++..+...
T Consensus 528 lL~~aie~ 535 (611)
T KOG1173|consen 528 LLKLAIED 535 (611)
T ss_pred HHHHHHHh
Confidence 77766544
No 67
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.96 E-value=4.4e-06 Score=75.32 Aligned_cols=288 Identities=11% Similarity=-0.011 Sum_probs=163.4
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHh----cCCc
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPV-TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCK----MGRV 141 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~----~~~~ 141 (414)
|+.+.+.+.+.......+...+. .........+...|++++|.+++++..+. .| |...+.. ...+.. .+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~ 96 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMR 96 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCc
Confidence 45566666666655554422232 22233344567788999999999987765 34 3334432 222222 3444
Q ss_pred chHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043191 142 SHGFVVLGRILRSCFTPD-AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 220 (414)
..+.+.+.. .....|+ ......+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...+++
T Consensus 97 ~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 97 DHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred hhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 445544443 1122233 3444556667888999999999999988865 44567788888899999999999999988
Q ss_pred HHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChh
Q 043191 221 MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300 (414)
Q Consensus 221 m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 300 (414)
...... ..|+... ..|..+...+...|+++
T Consensus 174 ~l~~~~-----~~~~~~~---------------------------------------------~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 174 WRDTWD-----CSSMLRG---------------------------------------------HNWWHLALFYLERGDYE 203 (355)
T ss_pred hhhccC-----CCcchhH---------------------------------------------HHHHHHHHHHHHCCCHH
Confidence 876431 0111110 01233556677789999
Q ss_pred HHHHHHHhchhCCC-CCCHhhH-H--HHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043191 301 IARELFQSLPRAGL-MPNVVTY-N--ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVS 376 (414)
Q Consensus 301 ~a~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 376 (414)
+|..++++...... .+..... + .++.-+...|....+.+++.......... .+ ............++...|+.+
T Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 204 AALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHH
Confidence 99999999754322 1112111 1 33344444555444444222111111110 11 111222235667788999999
Q ss_pred HHHHHHHhhhhCCCC--------CCHHHHHHHHHHHHHcCCcccc
Q 043191 377 SGFVIFGRILPSCFT--------PDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 377 ~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a 413 (414)
.|.++++.+...... ..........-++...|++++|
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A 326 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATA 326 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHH
Confidence 999999988763211 1122333344445577777665
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.95 E-value=1.4e-06 Score=69.24 Aligned_cols=196 Identities=13% Similarity=0.013 Sum_probs=97.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043191 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209 (414)
Q Consensus 130 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 209 (414)
.|.-.|.+.|+...|.+-+++.++.. +-+..+|..+...|-+.|+.+.|.+-|++..+.. +-+..+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34445555555555655555555553 3344555555555555666666666555555443 234445555555555555
Q ss_pred ChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHH
Q 043191 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCL 289 (414)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 289 (414)
++++|...|++...... ...-..+ |..+
T Consensus 118 ~~~eA~q~F~~Al~~P~-----Y~~~s~t-----------------------------------------------~eN~ 145 (250)
T COG3063 118 RPEEAMQQFERALADPA-----YGEPSDT-----------------------------------------------LENL 145 (250)
T ss_pred ChHHHHHHHHHHHhCCC-----CCCcchh-----------------------------------------------hhhh
Confidence 66666666555554320 0000111 2222
Q ss_pred HHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043191 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369 (414)
Q Consensus 290 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 369 (414)
.-+..+.|+.+.|.+.|++-.+.... ...+.-.+.....+.|++-.|.. .++.....+. ++..+.-..|+.-
T Consensus 146 G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~------~~~~~~~~~~-~~A~sL~L~iria 217 (250)
T COG3063 146 GLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL------YLERYQQRGG-AQAESLLLGIRIA 217 (250)
T ss_pred HHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH------HHHHHHhccc-ccHHHHHHHHHHH
Confidence 22333445555555555555544322 23344445555555555555555 5555544443 4555555555555
Q ss_pred HhcCCHHHHHHHHHhhhh
Q 043191 370 CKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 370 ~~~g~~~~a~~~~~~m~~ 387 (414)
...|+.+.+-+.=.++.+
T Consensus 218 k~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 218 KRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 555555555554444443
No 69
>PF12854 PPR_1: PPR repeat
Probab=98.94 E-value=1.6e-09 Score=59.50 Aligned_cols=34 Identities=44% Similarity=0.847 Sum_probs=32.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 043191 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIFGRIL 386 (414)
Q Consensus 353 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 386 (414)
+|+.||..||++||.+||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999984
No 70
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=8.3e-08 Score=82.41 Aligned_cols=251 Identities=14% Similarity=0.089 Sum_probs=156.9
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
-.|++..++.-.+ .....+ ..+......+.+++...|+++.++ .++.... .|.......+...+...++-+.++
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~-~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSP-ENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTC-HHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HhhhHHHHHHHhh-ccCCCc-hhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 3478888886666 333332 334556667888888999877544 4444333 566666655544443323444444
Q ss_pred HHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 146 VVLGRILRSCFT-PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 146 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
.-++........ .+....-.....+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444333333322 22333333335577789999999998653 35677778899999999999999999999974
Q ss_pred CCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHH
Q 043191 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304 (414)
Q Consensus 225 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 304 (414)
+ +..+...+..++.. .+...+.+.+|..
T Consensus 161 ~---------eD~~l~qLa~awv~-------------------------------------------l~~g~e~~~~A~y 188 (290)
T PF04733_consen 161 D---------EDSILTQLAEAWVN-------------------------------------------LATGGEKYQDAFY 188 (290)
T ss_dssp S---------CCHHHHHHHHHHHH-------------------------------------------HHHTTTCCCHHHH
T ss_pred C---------CcHHHHHHHHHHHH-------------------------------------------HHhCchhHHHHHH
Confidence 4 33444445555433 2222246888888
Q ss_pred HHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 043191 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV-SSGFVIFG 383 (414)
Q Consensus 305 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~ 383 (414)
+|+++.+. ..+++.+.+.+..++...|++++|.. ++.+..+.... ++.+...++-+....|+. +.+.+.+.
T Consensus 189 ~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~------~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 189 IFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEE------LLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp HHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHH------HHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHH------HHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 88887664 45677888888888888888888888 77777665432 566777777777777877 66777888
Q ss_pred hhhhC
Q 043191 384 RILPS 388 (414)
Q Consensus 384 ~m~~~ 388 (414)
++...
T Consensus 261 qL~~~ 265 (290)
T PF04733_consen 261 QLKQS 265 (290)
T ss_dssp HCHHH
T ss_pred HHHHh
Confidence 77763
No 71
>PF12854 PPR_1: PPR repeat
Probab=98.90 E-value=2.3e-09 Score=58.94 Aligned_cols=32 Identities=59% Similarity=1.084 Sum_probs=18.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043191 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221 (414)
Q Consensus 190 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 221 (414)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 72
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=4.5e-07 Score=79.55 Aligned_cols=224 Identities=14% Similarity=0.109 Sum_probs=153.9
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
-.|+...|.+-|+......+ .+...|-.+...|....+.++.+..|+.....+ +-|..+|..-...+.-.+++++|.
T Consensus 338 L~g~~~~a~~d~~~~I~l~~--~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDP--AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hcCCchhhhhhHHHHHhcCc--ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 45677788888888877766 222336667777888888888888888777653 226677777777777778888888
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
.=|++.+... +-++..|--+.-+.-+.+.++++...|++.+.. ++.-...|+....++...+++++|.+-|+...+
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 8888887764 335566666666677778888888888888765 344567888888888888888888888888776
Q ss_pred CCCCccccCchh----hHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhH
Q 043191 226 GEFGVVCEPDAI----TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301 (414)
Q Consensus 226 ~~~~~~~~p~~~----~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 301 (414)
+.|+.. .-..++. +| ++- +--.+++..
T Consensus 491 ------LE~~~~~~~v~~~plV~------------------------Ka------------------~l~-~qwk~d~~~ 521 (606)
T KOG0547|consen 491 ------LEPREHLIIVNAAPLVH------------------------KA------------------LLV-LQWKEDINQ 521 (606)
T ss_pred ------hccccccccccchhhhh------------------------hh------------------Hhh-hchhhhHHH
Confidence 334311 0111111 00 000 001277888
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh
Q 043191 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352 (414)
Q Consensus 302 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~ 352 (414)
|.+++++..+...+ ....|..|.+.-.+.|+.++|++ +|++-..
T Consensus 522 a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAie------lFEksa~ 565 (606)
T KOG0547|consen 522 AENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIE------LFEKSAQ 565 (606)
T ss_pred HHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHH------HHHHHHH
Confidence 88888888776544 45678888888888888888888 6766553
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.88 E-value=5.1e-07 Score=71.64 Aligned_cols=177 Identities=12% Similarity=0.017 Sum_probs=146.4
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCc
Q 043191 63 GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRV 141 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~ 141 (414)
+++..|+...|.+-+++..+.+| .+..+|..+...|-+.|+.+.|.+.|++..+. .| +..+.|.....+|..|++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DP--s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDP--SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCCh
Confidence 44677999999999999999987 78889999999999999999999999998766 34 567788888889999999
Q ss_pred chHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043191 142 SHGFVVLGRILRSC-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220 (414)
Q Consensus 142 ~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 220 (414)
++|.+.|++....- +.--..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++..|...++.
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 99999999998863 23345678888888899999999999999998874 33456777888889999999999999999
Q ss_pred HHcCCCCCCccccCchhhHHHHHHHHHhhcC
Q 043191 221 MANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251 (414)
Q Consensus 221 m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 251 (414)
....+ .++..+....|..--..|+
T Consensus 199 ~~~~~-------~~~A~sL~L~iriak~~gd 222 (250)
T COG3063 199 YQQRG-------GAQAESLLLGIRIAKRLGD 222 (250)
T ss_pred HHhcc-------cccHHHHHHHHHHHHHhcc
Confidence 99877 3666666555555444433
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.88 E-value=5.1e-06 Score=74.93 Aligned_cols=153 Identities=16% Similarity=0.106 Sum_probs=111.6
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcC
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA----KTKHYDTVLSLFKRLNLTGLFPD-RYTYNILINCFCKMG 139 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~ 139 (414)
...|++++|.+.++......| .+...+.. ...+. ..+....+.+.+.. ..+..|+ ......+...+...|
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDYP--RDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHCC--CcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 356899999999999988876 44445542 22222 24455555555554 1222333 334455667888999
Q ss_pred CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChHHHHH
Q 043191 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC-ELDV--FTYNTLINGLCRTGHTIVALN 216 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~a~~ 216 (414)
++++|.+.+++..+.. +.+...+..+...+...|++++|..++++.....- .++. ..|..+...+...|++++|..
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999875 55677888899999999999999999998876431 1232 345678888999999999999
Q ss_pred HHHHHHc
Q 043191 217 LFEEMAN 223 (414)
Q Consensus 217 ~~~~m~~ 223 (414)
++++...
T Consensus 208 ~~~~~~~ 214 (355)
T cd05804 208 IYDTHIA 214 (355)
T ss_pred HHHHHhc
Confidence 9999864
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.2e-05 Score=67.82 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=52.2
Q ss_pred hHHHHHHHhchhCCCCCC-HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043191 300 KIARELFQSLPRAGLMPN-VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSG 378 (414)
Q Consensus 300 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 378 (414)
++|..+++.-... .|+ ....+.+...|...|..+.+.. +++..... .||....+.|.+.+...+.+++|
T Consensus 421 EKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~------LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 421 EKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIK------LLEKHLII--FPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred HHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHH------HHHHHHhh--ccccHHHHHHHHHHHHhhhHHHH
Confidence 4555555544332 233 2344555566777777777777 77776654 67888888888888888888888
Q ss_pred HHHHHhhhhC
Q 043191 379 FVIFGRILPS 388 (414)
Q Consensus 379 ~~~~~~m~~~ 388 (414)
...|...+..
T Consensus 491 m~~y~~ALr~ 500 (564)
T KOG1174|consen 491 MEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhc
Confidence 8888777764
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.83 E-value=3.6e-06 Score=77.85 Aligned_cols=249 Identities=11% Similarity=0.065 Sum_probs=147.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---
Q 043191 97 FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE--- 173 (414)
Q Consensus 97 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 173 (414)
...+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ +.|..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 34456667777777777553332 22223344555666677777777777777777664 33444445555444222
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhc
Q 043191 174 --SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI-VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250 (414)
Q Consensus 174 --g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 250 (414)
.+.+...++++++... -|.......+.-.+.....+. .+...+..+...| + |+
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg------v-Ps--------------- 144 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG------V-PS--------------- 144 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC------C-ch---------------
Confidence 2455556666666544 354444444433333322222 2333444444444 2 22
Q ss_pred CCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhch----hCC----------CCC
Q 043191 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP----RAG----------LMP 316 (414)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g----------~~p 316 (414)
+|+.+-..|....+.+-...++.... ..+ -.|
T Consensus 145 ----------------------------------lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p 190 (517)
T PF12569_consen 145 ----------------------------------LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPP 190 (517)
T ss_pred ----------------------------------HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCc
Confidence 22222233332233333333333322 111 123
Q ss_pred CHh--hHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC
Q 043191 317 NVV--TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD-LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393 (414)
Q Consensus 317 ~~~--~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 393 (414)
... ++..+.+.|...|++++|.. ++++.+++ .|+ +..|..-.+.+-+.|++++|.+.++...+.+.. |
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~------~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-D 261 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALE------YIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-D 261 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHH------HHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-h
Confidence 443 34556778889999998888 99999987 455 678888889999999999999999999987543 7
Q ss_pred HHHHHHHHHHHHHcCCccccC
Q 043191 394 AVTFTSLIKILEINSFFRQVA 414 (414)
Q Consensus 394 ~~~~~~li~~~~~~g~~~~a~ 414 (414)
..+-+-....+.++|++++|+
T Consensus 262 RyiNsK~aKy~LRa~~~e~A~ 282 (517)
T PF12569_consen 262 RYINSKCAKYLLRAGRIEEAE 282 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHH
Confidence 788888999999999999873
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=8.3e-06 Score=73.14 Aligned_cols=265 Identities=14% Similarity=0.129 Sum_probs=199.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcch
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSH 143 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~ 143 (414)
...+++.+.+++++...+..| +....+-.-|.++...|+..+-..+=.+|.+. .| ...+|-++..-|.-.|+..+
T Consensus 255 y~~c~f~~c~kit~~lle~dp--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 255 YYGCRFKECLKITEELLEKDP--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHcChHHHHHHHhHHHHhhCC--CCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHH
Confidence 455789999999999999988 55566666677888999888877777777766 44 56789999998999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043191 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF--GC-ELDVFTYNTLINGLCRTGHTIVALNLFEE 220 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 220 (414)
|.+.|.+....+ +.=...|-.....|+-.|..|+|+..+....+. |. .|. --+.--|.+.+....|.+.|.+
T Consensus 331 ARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~----LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 331 ARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS----LYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred HHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH----HHHHHHHHHhccHHHHHHHHHH
Confidence 999999887654 223457888889999999999999988876653 21 222 2234457889999999999999
Q ss_pred HHcCCCCCCccccCc-hhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh--------ccccccHHHHH
Q 043191 221 MANGNGEFGVVCEPD-AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV--------QCLCLNFLCLI 290 (414)
Q Consensus 221 m~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~--------~~~~~~~~~li 290 (414)
... +.|+ ....+.+--... ..+.+.+|..+|+ .... .-...+++.|.
T Consensus 406 A~a--------i~P~Dplv~~Elgvvay---------------~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLG 462 (611)
T KOG1173|consen 406 ALA--------IAPSDPLVLHELGVVAY---------------TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLG 462 (611)
T ss_pred HHh--------cCCCcchhhhhhhheee---------------hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHH
Confidence 987 4444 333333322222 2356777777777 3322 11334578889
Q ss_pred HHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043191 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370 (414)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 370 (414)
.+|.+++.+++|+..|+.......+ +..+|.++.-.|...|+++.|.. .|.+... +.|+..+-..++..+.
T Consensus 463 H~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid------~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 463 HAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAID------HFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHH------HHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999999999999999998877544 88999999999999999999999 8888764 4788877777776543
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.79 E-value=4.9e-05 Score=69.46 Aligned_cols=329 Identities=12% Similarity=0.062 Sum_probs=182.6
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 043191 64 DITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143 (414)
Q Consensus 64 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 143 (414)
+..-|+-++|.+....-...++ .+.+.|+.+.-.+...+++++|++.|......+ +-|...+.-+--.-++.++++.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhh
Confidence 3466788889888888777654 778889988888888889999999988877653 2245555554444445555555
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHH------------------------
Q 043191 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC-ELDVFTY------------------------ 198 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~------------------------ 198 (414)
......++.+.. +.....|..+..++.-.|+...|..++++..+... .|+...|
T Consensus 128 ~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 128 YLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 555444444432 22233344444444445555555555444433221 1222222
Q ss_pred ----------------HHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHH-hhcCCCchh-HHHH
Q 043191 199 ----------------NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC-KEAGSANFL-GFSC 260 (414)
Q Consensus 199 ----------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~-~~~~~~~~~-~~~~ 260 (414)
.+-...+.+.+++++|..++..+... .||..-|...+..+. +-.+..... ....
T Consensus 207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~ 278 (700)
T KOG1156|consen 207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALYA 278 (700)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 22334456678889999999998884 477776665554443 221111110 0000
Q ss_pred ------------------HhhccchhhHhh-hhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhc----hhCC----
Q 043191 261 ------------------MASFSALNKMAF-YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL----PRAG---- 313 (414)
Q Consensus 261 ------------------~~~~~~~~~a~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~g---- 313 (414)
++....+..... ++...-...-+.++..+.+.|-.-...+-..++.-.+ ...|
T Consensus 279 ~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 279 ILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred HHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 001111111111 1110000222333444444443322222122222221 1111
Q ss_pred ------CCCCHhhH--HHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHh
Q 043191 314 ------LMPNVVTY--NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL-YTYNILINCFCKIGRVSSGFVIFGR 384 (414)
Q Consensus 314 ------~~p~~~~~--~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~ 384 (414)
-.|....| -.+++.+-+.|+++.|.. +++....+ .|+. ..|-.=.+.+...|++++|..++++
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~------yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~e 430 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE------YIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDE 430 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHH------HHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 13455444 456778889999988888 88888875 4553 3455555778899999999999999
Q ss_pred hhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 385 ILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 385 m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
..+.+ .+|...-..-..-..+.++.++|
T Consensus 431 a~elD-~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 431 AQELD-TADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HHhcc-chhHHHHHHHHHHHHHccccHHH
Confidence 98864 45666555666667777777766
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.78 E-value=3.4e-05 Score=70.44 Aligned_cols=170 Identities=11% Similarity=0.008 Sum_probs=128.6
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 146 (414)
.+++...++..+.+.+..+..+ .+.....-.+...|+-++|.+..+.-.+..+ -+.++|+.+.-.+....++++|++
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHg--eslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHG--ESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccc--hhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 3677888888888888766333 4444445556778999999999888776533 367788877777777789999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC
Q 043191 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226 (414)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 226 (414)
.|......+ +-|...+.-+.-.-++.|+++.....-.++.+.. +.....|..+..++--.|+...|..++++..+...
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999886 5678888888777888899998888877777652 23456788888888899999999999999988652
Q ss_pred CCCccccCchhhHHHHHHHH
Q 043191 227 EFGVVCEPDAITYSTIIDGL 246 (414)
Q Consensus 227 ~~~~~~~p~~~~~~~li~~~ 246 (414)
-.|+...|.....-.
T Consensus 175 -----~~~s~~~~e~se~~L 189 (700)
T KOG1156|consen 175 -----TSPSKEDYEHSELLL 189 (700)
T ss_pred -----cCCCHHHHHHHHHHH
Confidence 246666665544433
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=0.00018 Score=65.25 Aligned_cols=328 Identities=13% Similarity=0.106 Sum_probs=182.6
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh---C-----------------------
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL---T----------------------- 119 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~----------------------- 119 (414)
..|.+++|.+..+.+...++ .+..++..-+-++.+.+++++|+.+.+.=.. .
T Consensus 24 ~~~e~e~a~k~~~Kil~~~p--dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVP--DDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred cchHHHHHHHHHHHHHhcCC--CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 44566666666666666554 4455555555555555555555544332110 0
Q ss_pred --CCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCC----------------------------CCCHHhHHHHH-
Q 043191 120 --GLFP-DRYTYNILINCFCKMGRVSHGFVVLGRILRSCF----------------------------TPDAVTFTSLI- 167 (414)
Q Consensus 120 --g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------------------------~~~~~~~~~li- 167 (414)
|..+ |..+...-...+.+.+++++|+.+|+.+.+.+. .| ..+|..+.
T Consensus 102 ~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~-e~syel~yN 180 (652)
T KOG2376|consen 102 LKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP-EDSYELLYN 180 (652)
T ss_pred HhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC-cchHHHHHH
Confidence 1122 122333344557788999999999999876641 11 22344333
Q ss_pred --HHHHhcCCHHHHHHHHHHHHHcC-------------CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcc
Q 043191 168 --KDLCAESRIMEAAALFTKLRVFG-------------CELDV-FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231 (414)
Q Consensus 168 --~~~~~~g~~~~a~~~~~~m~~~g-------------~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 231 (414)
..++..|++.+|+++++.....+ ++-+. .+--.|.-++...|+-.+|..++.......
T Consensus 181 ~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~------ 254 (652)
T KOG2376|consen 181 TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN------ 254 (652)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc------
Confidence 34667899999999998873211 11111 122335566778899999999999998865
Q ss_pred ccCchhhHHHHHHHHHhh---cC---------------------------------------------------------
Q 043191 232 CEPDAITYSTIIDGLCKE---AG--------------------------------------------------------- 251 (414)
Q Consensus 232 ~~p~~~~~~~li~~~~~~---~~--------------------------------------------------------- 251 (414)
.+|........+-+... .+
T Consensus 255 -~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 255 -PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred -CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 33332222211111110 00
Q ss_pred ---CCchhHHHHHh-----hccchhhHhhhhh-hhhhccc--cccHHHHHHHHHhcCChhHHHHHHH--------hchhC
Q 043191 252 ---SANFLGFSCMA-----SFSALNKMAFYFP-LVRVQCL--CLNFLCLIDGLCKISKLKIARELFQ--------SLPRA 312 (414)
Q Consensus 252 ---~~~~~~~~~~~-----~~~~~~~a~~~~~-~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~ 312 (414)
.+....-..+. ......++..++. .....|. ......++......|+++.|++++. .+.+.
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 00000000000 1112333444443 2222222 2334455667788899999999999 55665
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhhhhh-hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC
Q 043191 313 GLMPNVVTYNILIRGLCNDGQMDETKH-YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391 (414)
Q Consensus 313 g~~p~~~~~~~li~~~~~~g~~~~a~~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 391 (414)
+..|. +...++..+.+.++-+.|.. +..|+..|..-.... .--..++..+...-.+.|+-++|..+++++.+.+ .
T Consensus 414 ~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s-~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~ 489 (652)
T KOG2376|consen 414 KHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS-IALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-P 489 (652)
T ss_pred ccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc-hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-C
Confidence 55554 44556666777777666666 122222332222111 1112234444444467899999999999999963 6
Q ss_pred CCHHHHHHHHHHHHHc
Q 043191 392 PDAVTFTSLIKILEIN 407 (414)
Q Consensus 392 p~~~~~~~li~~~~~~ 407 (414)
+|..+...++.+|++.
T Consensus 490 ~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 490 NDTDLLVQLVTAYARL 505 (652)
T ss_pred chHHHHHHHHHHHHhc
Confidence 7889999999999876
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=2.6e-05 Score=66.07 Aligned_cols=153 Identities=10% Similarity=0.067 Sum_probs=84.4
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 147 (414)
.++.-|+.+++--...+. .....+---+..++.+.|++++|+..+..+.... .|+...+..|..++.-.|.+.+|.++
T Consensus 36 rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHH
Confidence 466778777776554433 2211222334556677888888888887766532 44555555555555455555555544
Q ss_pred HHHHHHc--------------C-----------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043191 148 LGRILRS--------------C-----------FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202 (414)
Q Consensus 148 ~~~~~~~--------------~-----------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 202 (414)
-....+. + +.-+..---+|....-..-++.+|++++.+.... .|+-...|.-+
T Consensus 114 ~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ 191 (557)
T KOG3785|consen 114 AEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYM 191 (557)
T ss_pred HhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHH
Confidence 3322110 0 0001111223333333344677888888888765 35555555433
Q ss_pred -HHHHhcCChHHHHHHHHHHHcC
Q 043191 203 -NGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 203 -~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
-+|.+..-++-+.++++-....
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHh
Confidence 4556777788888888877763
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.66 E-value=2.7e-06 Score=73.18 Aligned_cols=116 Identities=14% Similarity=0.125 Sum_probs=84.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHh----cCChhhhhhhhhHHHHHHHHHhCCCCCCHH
Q 043191 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN----DGQMDETKHYETVFLLFKRLNSTGLFPDLY 360 (414)
Q Consensus 285 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~ 360 (414)
.....+..|.+.++++.|.+.++.|.+.. .| .+...+..++.. .+.+.+|.. +|+++.+. ..+++.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y------~f~El~~~-~~~t~~ 202 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFY------IFEELSDK-FGSTPK 202 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHH------HHHHHHCC-S--SHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHH------HHHHHHhc-cCCCHH
Confidence 34456778888899999999999998753 23 444445555443 334566655 99998765 567899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcc
Q 043191 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411 (414)
Q Consensus 361 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 411 (414)
+.+.+..++...|++++|.+++.+..+.+-. +..+...++.+....|+..
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCCh
Confidence 9999999999999999999999999876533 6778888898888888874
No 83
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=7.3e-06 Score=78.79 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=117.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD-RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (414)
.++..+-.|..+..+.|.+++|..+++...+. .|+ ......+...+.+.+++++|+..+++..... +-+......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 66889999999999999999999999999876 565 5567788899999999999999999999885 4467778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 167 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999843 3457889999999999999999999999987753
No 84
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=0.0003 Score=62.21 Aligned_cols=299 Identities=10% Similarity=0.086 Sum_probs=177.9
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 147 (414)
|++.-|.++|+.-..- .|+..+|++.|..=.+.+.++.|..++++..-. .|+..+|-...+.=.+.|+...+.++
T Consensus 155 gNi~gaRqiferW~~w---~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW---EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred cccHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4555555555544332 577777887777777777777777777776543 46666666555555555555555555
Q ss_pred HHHHHHc-C-----------------------------------------------------------------------
Q 043191 148 LGRILRS-C----------------------------------------------------------------------- 155 (414)
Q Consensus 148 ~~~~~~~-~----------------------------------------------------------------------- 155 (414)
|+...+. |
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 5544332 1
Q ss_pred --------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCChHHHHHH
Q 043191 156 --------FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV-------FTYNTLINGL---CRTGHTIVALNL 217 (414)
Q Consensus 156 --------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~---~~~g~~~~a~~~ 217 (414)
-+.|-.+|--.++.-...|+.+...++|++.... ++|-. .+|--+=-++ ....+.+.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 1223333444444444455556666666655543 23311 1111111111 245667777777
Q ss_pred HHHHHcCCCCCCccccCchhhHHHHHHHHHhh------------------cCCCchhHHHHH----hhccchhhHhhhhh
Q 043191 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKE------------------AGSANFLGFSCM----ASFSALNKMAFYFP 275 (414)
Q Consensus 218 ~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~------------------~~~~~~~~~~~~----~~~~~~~~a~~~~~ 275 (414)
|+...+- ++....||.-+--.|+.- |.-|....+... ++.+.++....++.
T Consensus 389 yq~~l~l-------IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 389 YQACLDL-------IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHhh-------cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777662 344455665544333321 112222222222 27788888888888
Q ss_pred -hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCC-CCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh
Q 043191 276 -LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG-LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352 (414)
Q Consensus 276 -~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~ 352 (414)
...- +.+..+|.-....=...|+.+.|..+|+-..+.. .......|...|+-=...|.++.|.. +++.+.+
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~------LYerlL~ 535 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA------LYERLLD 535 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH------HHHHHHH
Confidence 4444 6778999998888889999999999999877652 22234567777777778899999988 9999998
Q ss_pred CCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHhhhh
Q 043191 353 TGLFPDLYTYNILINCFC-----KIG-----------RVSSGFVIFGRILP 387 (414)
Q Consensus 353 ~~~~p~~~~~~~li~~~~-----~~g-----------~~~~a~~~~~~m~~ 387 (414)
.. +-...|-++...-. ..| .+..|..+|++...
T Consensus 536 rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 536 RT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 63 33445655544322 333 55678888877653
No 85
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.63 E-value=7.2e-05 Score=68.38 Aligned_cols=315 Identities=11% Similarity=0.083 Sum_probs=160.2
Q ss_pred hhhcCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 043191 57 CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136 (414)
Q Consensus 57 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 136 (414)
|..++.-++++|++..-...|+..+..-|.......|...+......+-++-++.++++..+. .| ..-+-.|..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHH
Confidence 344455566778888888888877766554445566777777777777777777777776644 22 33455566666
Q ss_pred hcCCcchHHHHHHHHHHcC------CCCCHH--------------------------------------hHHHHHHHHHh
Q 043191 137 KMGRVSHGFVVLGRILRSC------FTPDAV--------------------------------------TFTSLIKDLCA 172 (414)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~------~~~~~~--------------------------------------~~~~li~~~~~ 172 (414)
..+++++|-+.+...+... .+.+.. .|.+|.+-|.+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 7777777766665554321 122222 34555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHh----
Q 043191 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK---- 248 (414)
Q Consensus 173 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~---- 248 (414)
.|+++.|.++|++.... ..+..-|+.+..+|++-..-.-+..+=-.-.+.+ -.-+...+...+..+..
T Consensus 261 ~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~------n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESG------NEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred hhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhccc------ChhhhhhHHHHHHHHHHHHhc
Confidence 55555555555554443 1233333344444433221111110000000001 11111111111111111
Q ss_pred ----------hcCCCchhHHHHHh--hccchhhHhhhhh-hhh-hcc------ccccHHHHHHHHHhcCChhHHHHHHHh
Q 043191 249 ----------EAGSANFLGFSCMA--SFSALNKMAFYFP-LVR-VQC------LCLNFLCLIDGLCKISKLKIARELFQS 308 (414)
Q Consensus 249 ----------~~~~~~~~~~~~~~--~~~~~~~a~~~~~-~~~-~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~ 308 (414)
..++.++..+.... ..++..+....+. ... ..| -...|..+.+.|-..|+++.|..+|++
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 11122222221111 3333444444443 222 122 133478889999999999999999998
Q ss_pred chhCCCCCC---HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCC----------CC-------CHHHHHHHHHH
Q 043191 309 LPRAGLMPN---VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL----------FP-------DLYTYNILINC 368 (414)
Q Consensus 309 m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~----------~p-------~~~~~~~li~~ 368 (414)
..+...+-- ..+|......=.++.+++.|.. +++......- .| +...|..+++-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~------lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALK------LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHH------HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 876533211 2334444444445555555555 6666543211 11 23345555555
Q ss_pred HHhcCCHHHHHHHHHhhhhCC
Q 043191 369 FCKIGRVSSGFVIFGRILPSC 389 (414)
Q Consensus 369 ~~~~g~~~~a~~~~~~m~~~g 389 (414)
--..|-++....+++++++..
T Consensus 487 eEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHh
Confidence 556777777888888877654
No 86
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=0.00012 Score=64.06 Aligned_cols=153 Identities=11% Similarity=0.023 Sum_probs=113.5
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCc--c
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV--S 142 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~--~ 142 (414)
..++.++|+.+.+.+...+| .+..+|+..-.++...| +++++++.++++.+... -+..+|+.....+.+.|+. +
T Consensus 49 ~~e~serAL~lt~~aI~lnP--~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNP--GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhH
Confidence 34678999999999999887 66778887777777777 67999999999887642 2555677665556666653 6
Q ss_pred hHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCh----HHHH
Q 043191 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT---GHT----IVAL 215 (414)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~----~~a~ 215 (414)
.++.+++.+++.. +-+..+|+....++...|+++++++.++++.+.+. .|..+|+....++.+. |.. ++.+
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHH
Confidence 7788888888876 45888999988889999999999999999998763 4667777766655544 222 3455
Q ss_pred HHHHHHHc
Q 043191 216 NLFEEMAN 223 (414)
Q Consensus 216 ~~~~~m~~ 223 (414)
+...++..
T Consensus 204 ~y~~~aI~ 211 (320)
T PLN02789 204 KYTIDAIL 211 (320)
T ss_pred HHHHHHHH
Confidence 55555554
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=7.6e-06 Score=73.60 Aligned_cols=249 Identities=15% Similarity=0.081 Sum_probs=158.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcch
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSH 143 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~ 143 (414)
++.|++.+|.-.|+...+.+| .+..+|-.|....+..++=..|+..+++..+. .| |......|.-.|...|.-..
T Consensus 296 m~nG~L~~A~LafEAAVkqdP--~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDP--QHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HhcCCchHHHHHHHHHHhhCh--HHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 567778888888888877776 77788888888888888877888888777765 34 56667777777887777777
Q ss_pred HHHHHHHHHHcCCCC--------CHHhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHH
Q 043191 144 GFVVLGRILRSCFTP--------DAVTFTSLIKDLCAESRIMEAAALFTKLR-VFGCELDVFTYNTLINGLCRTGHTIVA 214 (414)
Q Consensus 144 a~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~a 214 (414)
|+..++..+....+- +...-+. ........+....++|-++. +.+..+|..++..|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 777777665542110 0000000 11122223334444544443 344346677777777777778888888
Q ss_pred HHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHH
Q 043191 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294 (414)
Q Consensus 215 ~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 294 (414)
.+.|+.... +.|+.. ..||-|...++
T Consensus 450 iDcf~~AL~--------v~Pnd~----------------------------------------------~lWNRLGAtLA 475 (579)
T KOG1125|consen 450 VDCFEAALQ--------VKPNDY----------------------------------------------LLWNRLGATLA 475 (579)
T ss_pred HHHHHHHHh--------cCCchH----------------------------------------------HHHHHhhHHhc
Confidence 888888776 445432 33566666666
Q ss_pred hcCChhHHHHHHHhchhCCCCCC-HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh---C------CCCCCHHHHHH
Q 043191 295 KISKLKIARELFQSLPRAGLMPN-VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS---T------GLFPDLYTYNI 364 (414)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~---~------~~~p~~~~~~~ 364 (414)
...+.++|+..|.+..+. +|+ +.+.-.|--+|...|.+++|.. .|-..+. . +..++...|..
T Consensus 476 N~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~------hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVK------HLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred CCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHH------HHHHHHHhhhcccccccCCcchHHHHHH
Confidence 668899999999988774 454 2333445567889999888877 3333322 1 11234567777
Q ss_pred HHHHHHhcCCHHHHHHH
Q 043191 365 LINCFCKIGRVSSGFVI 381 (414)
Q Consensus 365 li~~~~~~g~~~~a~~~ 381 (414)
|=.++...++.|.+.++
T Consensus 548 LR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 548 LRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHHcCCchHHHHh
Confidence 77777777777755543
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.57 E-value=4.9e-06 Score=70.20 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=118.3
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhc-
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR----YTYNILINCFCKM- 138 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~- 138 (414)
...|++++|...|+.+....|..|. ..++..+..++.+.|++++|...++++.+. .|+. .++..+..++.+.
T Consensus 44 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~g~~~~~~~ 121 (235)
T TIGR03302 44 LDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAYYLRGLSNYNQI 121 (235)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHHHHHHHHHHHhc
Confidence 4568999999999999887762222 247788899999999999999999999865 3322 2455555555544
Q ss_pred -------CCcchHHHHHHHHHHcCCCCCHHhH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHcC--CC
Q 043191 139 -------GRVSHGFVVLGRILRSCFTPDAVTF-----------------TSLIKDLCAESRIMEAAALFTKLRVFG--CE 192 (414)
Q Consensus 139 -------~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~~g--~~ 192 (414)
|+++.|.+.++.+.+... -+...+ -.+...|.+.|++++|...+++..... -+
T Consensus 122 ~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 122 DRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence 678899999999987632 122222 134556788899999999999998762 12
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 193 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
.....+..+..++.+.|++++|..+++.+...
T Consensus 201 ~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 201 ATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23578889999999999999999999998764
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=7.8e-05 Score=64.60 Aligned_cols=254 Identities=14% Similarity=0.067 Sum_probs=140.6
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043191 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA-VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202 (414)
Q Consensus 124 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 202 (414)
|......+.+++...|+.++|+..|++....+ |+. .......-.+.+.|+++....+...+.... .-....|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 44455555566666666666666665554432 221 111112222344555555555555444321 11222233333
Q ss_pred HHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-c
Q 043191 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-Q 280 (414)
Q Consensus 203 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~ 280 (414)
......+++..|+.+-++..+.. |..+-- .++ ....++..++.++|.-.|+ .... +
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~--------~r~~~a-lil-------------KG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE--------PRNHEA-LIL-------------KGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC--------cccchH-HHh-------------ccHHHHhccchHHHHHHHHHHHhcch
Confidence 33444555666666555554422 221110 011 1122335677777777777 4444 3
Q ss_pred cccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHH-HHHHhc-CChhhhhhhhhHHHHHHHHHhCCCCCC
Q 043191 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI-RGLCND-GQMDETKHYETVFLLFKRLNSTGLFPD 358 (414)
Q Consensus 281 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~-g~~~~a~~~~~a~~~~~~m~~~~~~p~ 358 (414)
.+...|..|+..|...|++.+|..+-++..+. ..-+..+.+.+- ..|.-. ..-++|.. +++.-... .|+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk------f~ek~L~~--~P~ 436 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK------FAEKSLKI--NPI 436 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH------HHHhhhcc--CCc
Confidence 56777888888888888888877666554332 122445554441 222211 11233333 66665543 455
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 359 -LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 359 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
....+.+...|...|..+.++.+++..+. ..||....+.|.+.+...+.+.+|
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHH
Confidence 34556677788999999999999999988 478999999999998888777665
No 90
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.56 E-value=7.2e-06 Score=66.64 Aligned_cols=155 Identities=12% Similarity=0.040 Sum_probs=128.9
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 043191 64 DITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143 (414)
Q Consensus 64 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 143 (414)
+...|+-+.+..+........+ .|....+..+....+.|++.+|+..|++..... ++|..+|+.+.-+|.+.|+++.
T Consensus 76 ~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 76 LYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhH
Confidence 3445666777777666555443 666677789999999999999999999988653 6689999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
|..-|.+..+.. .-+...+|.+.-.|.-.|+.+.|..++......+ .-|..+-..+..+....|++++|.++...-..
T Consensus 153 Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 153 ARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 999999998874 3466778889889999999999999999998875 44778888888899999999999998776654
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.51 E-value=1.1e-05 Score=65.41 Aligned_cols=128 Identities=14% Similarity=0.170 Sum_probs=102.8
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCC--cc
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF-CKMGR--VS 142 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~~~--~~ 142 (414)
..++.++++..++...+.+| .+...|..+...|...|++++|...|++..+.. +-+...+..+..++ ...|+ .+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P--~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANP--QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred CchhHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcH
Confidence 45777888888998888887 888899999999999999999999999888763 22667777777764 66676 48
Q ss_pred hHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043191 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198 (414)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 198 (414)
+|.+++++..+.+ +-+...+..+...+.+.|++++|...|+++.+.. +|+..-+
T Consensus 128 ~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 128 QTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 9999999998886 4477888888889999999999999999988765 4444333
No 92
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=0.00033 Score=61.23 Aligned_cols=134 Identities=7% Similarity=-0.027 Sum_probs=99.2
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcC-CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--H
Q 043191 101 AKTKHYDTVLSLFKRLNLTGLFPD-RYTYNILINCFCKMG-RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR--I 176 (414)
Q Consensus 101 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~ 176 (414)
...++.++|+.+.+++.+. .|+ ..+|+..-.++...| ++++++..++++.+.. +-+..+|+..-..+.+.|+ .
T Consensus 48 ~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 48 ASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 4456788999999998876 453 445666556666666 5799999999999876 4466677766555666665 3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHH
Q 043191 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245 (414)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~ 245 (414)
++++++++++.+.. +-|..+|+....++...|+++++++.++++.+.+ .-+...|+.....
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-------~~N~sAW~~R~~v 185 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-------VRNNSAWNQRYFV 185 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-------CCchhHHHHHHHH
Confidence 67889998888775 4578899999999999999999999999999865 3344455554433
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.47 E-value=0.0001 Score=73.09 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=44.5
Q ss_pred HhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCH--HHHHHHHHHHHh
Q 043191 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL--YTYNILINCFCK 371 (414)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~ 371 (414)
.+.|+.+.+..+|+.....-++ -...|+..|+.=.++|+.+.++. +|++....++.|-. ..|...+..=-.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~------lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRD------LFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHH------HHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 4556666666666666554322 34556666666666666666666 66666666555432 234444443334
Q ss_pred cCCHHHHHHH
Q 043191 372 IGRVSSGFVI 381 (414)
Q Consensus 372 ~g~~~~a~~~ 381 (414)
.|+-..+..+
T Consensus 1684 ~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1684 HGDEKNVEYV 1693 (1710)
T ss_pred cCchhhHHHH
Confidence 4544444433
No 94
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=1.7e-05 Score=73.40 Aligned_cols=204 Identities=14% Similarity=0.080 Sum_probs=107.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043191 95 ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174 (414)
Q Consensus 95 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 174 (414)
.+...+.+.|-...|..+|+++. .|.-+|-+|...|+..+|..+..+..+. +||...|..+.+......
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 44455556666666666666543 3444566666666666666666666552 566666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCc
Q 043191 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254 (414)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 254 (414)
-+++|+++++..... .-..+.....+.++++++.+.|+.-.+.+ .-...+|-..-.+.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-------plq~~~wf~~G~~A-------- 529 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-------PLQLGTWFGLGCAA-------- 529 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-------ccchhHHHhccHHH--------
Confidence 666666666554321 11111122233566666666666655432 11222332222111
Q ss_pred hhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcC
Q 043191 255 FLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332 (414)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 332 (414)
++.+++..+.+.|. -... +.+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|
T Consensus 530 -------Lqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvg 601 (777)
T KOG1128|consen 530 -------LQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVG 601 (777)
T ss_pred -------HHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcc
Confidence 13345555555555 3333 233455666666666666666666666665555422 4444555555555666
Q ss_pred Chhhhhh
Q 043191 333 QMDETKH 339 (414)
Q Consensus 333 ~~~~a~~ 339 (414)
.+++|.+
T Consensus 602 e~eda~~ 608 (777)
T KOG1128|consen 602 EFEDAIK 608 (777)
T ss_pred cHHHHHH
Confidence 6555555
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=1.7e-05 Score=60.89 Aligned_cols=91 Identities=10% Similarity=-0.103 Sum_probs=42.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 175 (414)
+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+...+.. +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 4444445555555555555444331 1134444444444555555555555555554433 3344444444444555555
Q ss_pred HHHHHHHHHHHHH
Q 043191 176 IMEAAALFTKLRV 188 (414)
Q Consensus 176 ~~~a~~~~~~m~~ 188 (414)
.++|...|++...
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 96
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.45 E-value=0.00025 Score=70.58 Aligned_cols=227 Identities=12% Similarity=0.049 Sum_probs=134.3
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPD---RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTF 163 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (414)
.+...|-.-|....+.++.++|.+++++.... ++.-. ...|.++++.-..-|.-+...++|+++.+.. -.-..|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 45556777777777777777777777776543 11111 2345555555555566666677777776642 123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHH
Q 043191 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243 (414)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li 243 (414)
..|...|.+.+.+++|.++|+.|.+.- .-...+|...+..+.+.++-+.|..++.+..+ +.|.... .-+|
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--------~lPk~eH-v~~I 1603 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALK--------SLPKQEH-VEFI 1603 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--------hcchhhh-HHHH
Confidence 777777777777777777777776642 23556677777777777777777777777766 3343111 1122
Q ss_pred HHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCH--h
Q 043191 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV--V 319 (414)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~ 319 (414)
.-++.. ....|+.+.+..+|+ .... +.-+..|+..|++=.++|+.+.+..+|++....++.|-- .
T Consensus 1604 skfAqL-----------EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1604 SKFAQL-----------EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred HHHHHH-----------HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 222110 114566666666776 4444 444667777777777777777777777777776665432 3
Q ss_pred hHHHHHHHHHhcCChhhh
Q 043191 320 TYNILIRGLCNDGQMDET 337 (414)
Q Consensus 320 ~~~~li~~~~~~g~~~~a 337 (414)
.|.-.+..=-..|+-..+
T Consensus 1673 ffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1673 FFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred HHHHHHHHHHhcCchhhH
Confidence 344444443444443333
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=3.4e-05 Score=63.86 Aligned_cols=278 Identities=15% Similarity=0.100 Sum_probs=147.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH-HHHHHhcCCcch
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL-INCFCKMGRVSH 143 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~~~~~~ 143 (414)
++..++++|++++....+..+ .+......|..+|....++..|.+.++++... .|...-|... ...+.+.+.+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHH
Confidence 344688999999998887765 57788888999999999999999999988765 4554444321 223345556666
Q ss_pred HHHHHHHHHHcC-------------------C------------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043191 144 GFVVLGRILRSC-------------------F------------TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE 192 (414)
Q Consensus 144 a~~~~~~~~~~~-------------------~------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 192 (414)
|+.+...|.... + .-+..+.+......-+.|+++.|.+-|....+-|--
T Consensus 97 ALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 97 ALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 666655544310 0 012222222222334566777777777666654323
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchh----hHHHHHHHHHhhcCCCchhHHHHHhhccchh
Q 043191 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI----TYSTIIDGLCKEAGSANFLGFSCMASFSALN 268 (414)
Q Consensus 193 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~----~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (414)
.....||.-+.. .+.|+++.|++...++.++| ++-... .-+..+++- ...+..+
T Consensus 177 qpllAYniALaH-y~~~qyasALk~iSEIieRG------~r~HPElgIGm~tegiDvr----svgNt~~----------- 234 (459)
T KOG4340|consen 177 QPLLAYNLALAH-YSSRQYASALKHISEIIERG------IRQHPELGIGMTTEGIDVR----SVGNTLV----------- 234 (459)
T ss_pred CchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhh------hhcCCccCccceeccCchh----cccchHH-----------
Confidence 345566655443 34567777777777777666 221111 000000000 0000000
Q ss_pred hHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhC-CCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHH
Q 043191 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA-GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLF 347 (414)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~ 347 (414)
.....-+..+|.-...+.+.|+++.|.+-+-.|.-. ....|++|...+.-.=. .+++.+..+ -+
T Consensus 235 --------lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~------KL 299 (459)
T KOG4340|consen 235 --------LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFE------KL 299 (459)
T ss_pred --------HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHH------HH
Confidence 000111222333444456667777777777777422 23345555554422211 122333222 23
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043191 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGR 384 (414)
Q Consensus 348 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 384 (414)
.-+.+.. +....||..++-.||+..-++.|-.++.+
T Consensus 300 qFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 300 QFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 3333332 23456777777777777777777666544
No 98
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.43 E-value=0.00054 Score=64.19 Aligned_cols=337 Identities=12% Similarity=0.010 Sum_probs=195.8
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHh-cCCc
Q 043191 64 DITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD-RYTYNILINCFCK-MGRV 141 (414)
Q Consensus 64 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~-~~~~ 141 (414)
+..+|+++.+.+.|+.....-. ...+.|+.+-..+...|.-..|+.+++.-....-.|+ ...+-..-..|.+ .+.+
T Consensus 333 l~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ 410 (799)
T KOG4162|consen 333 LSRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLV 410 (799)
T ss_pred HHHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhh
Confidence 3466778888888877665432 4556677777777777777777777665433321232 2222222222221 2223
Q ss_pred ch--------------------------------------------------HHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043191 142 SH--------------------------------------------------GFVVLGRILRSCFTPDAVTFTSLIKDLC 171 (414)
Q Consensus 142 ~~--------------------------------------------------a~~~~~~~~~~~~~~~~~~~~~li~~~~ 171 (414)
++ +++.+++..+.+ +-|+...-.+.--|+
T Consensus 411 eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A 489 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYA 489 (799)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33 333444444332 223333333344577
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCC-CCc------------cccCchhh
Q 043191 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE-FGV------------VCEPDAIT 238 (414)
Q Consensus 172 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~------------~~~p~~~~ 238 (414)
..++++.|.+...+..+.+-.-+...|..|.-.+...+++.+|+.+.+...+.-+. .+. +......|
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t 569 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDT 569 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHH
Confidence 78889999999999888755668889999999999999999999998876653211 000 00112234
Q ss_pred HHHHHHHHHhh---------cC--------------CCchhH-H---HHHhhccchhhHhhhhhhhhh----ccc-----
Q 043191 239 YSTIIDGLCKE---------AG--------------SANFLG-F---SCMASFSALNKMAFYFPLVRV----QCL----- 282 (414)
Q Consensus 239 ~~~li~~~~~~---------~~--------------~~~~~~-~---~~~~~~~~~~~a~~~~~~~~~----~~~----- 282 (414)
+..++..+-.. |. ..++.. . ..... .+.+.+..-..+... .++
T Consensus 570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~~Lp~s~~~~~~~~~~~~ 648 (799)
T KOG4162|consen 570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSELKLPSSTVLPGPDSLWYL 648 (799)
T ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hhhhhcccccccCcccccCCCCchHHH
Confidence 44444444310 00 000000 0 00000 111111100000100 111
Q ss_pred -cccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCC-HH
Q 043191 283 -CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD-LY 360 (414)
Q Consensus 283 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~-~~ 360 (414)
...|......+.+.+..++|...+.+....- .-....|...-..+...|..++|.+ .|...... .|+ +.
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~------af~~Al~l--dP~hv~ 719 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKE------AFLVALAL--DPDHVP 719 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHH------HHHHHHhc--CCCCcH
Confidence 1224456677788888888887777665532 2244556655566777788777777 77777654 444 56
Q ss_pred HHHHHHHHHHhcCCHHHHHH--HHHhhhhCCCCCCHHHHHHHHHHHHHcCCccccC
Q 043191 361 TYNILINCFCKIGRVSSGFV--IFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414 (414)
Q Consensus 361 ~~~~li~~~~~~g~~~~a~~--~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 414 (414)
...++...+...|+...|.. ++..+.+.+ .-+...|-.+...+-+.|+.++|+
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHH
Confidence 77888888999998888877 889998865 336889999999999999988763
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00024 Score=68.45 Aligned_cols=202 Identities=11% Similarity=0.098 Sum_probs=119.8
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043191 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205 (414)
Q Consensus 126 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 205 (414)
..|+.+..+-.+.|...+|.+-|-+. -|+..|.-+++...+.|.|++-.+++...++..-+|... +.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 45666666666666666665544221 255666777777777777777777666665554444433 4566677
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhcccccc
Q 043191 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLN 285 (414)
Q Consensus 206 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 285 (414)
++.++..+.++++ .-|+......+-+-|... +.++.|.-.+. ++..
T Consensus 1177 Akt~rl~elE~fi-------------~gpN~A~i~~vGdrcf~~---------------~~y~aAkl~y~------~vSN 1222 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-------------AGPNVANIQQVGDRCFEE---------------KMYEAAKLLYS------NVSN 1222 (1666)
T ss_pred HHhchHHHHHHHh-------------cCCCchhHHHHhHHHhhh---------------hhhHHHHHHHH------Hhhh
Confidence 7776666554432 234544444444444443 44444444443 2334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHH
Q 043191 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365 (414)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~l 365 (414)
|.-|...+...|++..|..--++.- +..||..+-.+|...+.+. +.+|....+.....-...+
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFr-----------lAQiCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFR-----------LAQICGLNIIVHADELEEL 1285 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhh-----------HHHhcCceEEEehHhHHHH
Confidence 6777777888888887776655432 5677888877887766653 3333333344445556667
Q ss_pred HHHHHhcCCHHHHHHHHHhhh
Q 043191 366 INCFCKIGRVSSGFVIFGRIL 386 (414)
Q Consensus 366 i~~~~~~g~~~~a~~~~~~m~ 386 (414)
+.-|-..|-+++.+.+++.-+
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHhhh
Confidence 777777777777777666544
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=0.00073 Score=60.74 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=80.0
Q ss_pred CCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCC
Q 043191 62 EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD-RYTYNILINCFCKMGR 140 (414)
Q Consensus 62 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~ 140 (414)
...+..|+++.|+..|-......| +|-..|..-..+|++.|++++|++=-.+-.+. .|+ ...|+....++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 445678999999999999998887 68889999999999999999988766655543 564 5678888888888999
Q ss_pred cchHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043191 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170 (414)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 170 (414)
+++|+.-|.+-++.. +.+...++.+..++
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 999999888776653 33444444444444
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=8.5e-06 Score=75.27 Aligned_cols=224 Identities=11% Similarity=0.070 Sum_probs=165.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
.+.|-...|+.+|++. ..|.-+|.+|...|+..+|..+..+..++ +||...|..+.+......-+++|
T Consensus 409 ~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 409 LSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred HHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHH
Confidence 3557778999999876 45777999999999999999999888774 78999999888887777778888
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
.++.+..... .-..+..-..+.++++++.+.|+.-.+.. +.-..+|-.+..+..+.+++..|.+.|.....
T Consensus 477 wElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt- 547 (777)
T KOG1128|consen 477 WELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT- 547 (777)
T ss_pred HHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh-
Confidence 8888765432 22222223344789999999998876654 34567888888888999999999999999987
Q ss_pred CCCCCccccCch-hhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hh-hhccccccHHHHHHHHHhcCChhH
Q 043191 225 NGEFGVVCEPDA-ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LV-RVQCLCLNFLCLIDGLCKISKLKI 301 (414)
Q Consensus 225 ~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~-~~~~~~~~~~~li~~~~~~~~~~~ 301 (414)
..||. ..|+.+-.+|.+. ++..++...+. .. -...+...|...+-...+.|.+++
T Consensus 548 -------L~Pd~~eaWnNls~ayi~~---------------~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 548 -------LEPDNAEAWNNLSTAYIRL---------------KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred -------cCCCchhhhhhhhHHHHHH---------------hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHH
Confidence 56765 5799998888775 55566666665 22 224555667777888899999999
Q ss_pred HHHHHHhchhCC-CCCCHhhHHHHHHHHHhc
Q 043191 302 ARELFQSLPRAG-LMPNVVTYNILIRGLCND 331 (414)
Q Consensus 302 a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~ 331 (414)
|++.+.++.... ..-|......++....+.
T Consensus 606 a~~A~~rll~~~~~~~d~~vl~~iv~~~~~~ 636 (777)
T KOG1128|consen 606 AIKAYHRLLDLRKKYKDDEVLLIIVRTVLEG 636 (777)
T ss_pred HHHHHHHHHHhhhhcccchhhHHHHHHHHhh
Confidence 999999875432 111555666666555543
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.40 E-value=2.6e-05 Score=63.31 Aligned_cols=120 Identities=10% Similarity=0.104 Sum_probs=101.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHH-HhcCC--HHHH
Q 043191 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL-CAESR--IMEA 179 (414)
Q Consensus 103 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~a 179 (414)
.++.+++...++...+.+ +.|...|..+...|...|+++.|...|++..+.. +-+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 566778888888776553 4478899999999999999999999999999886 45778888888764 67777 5999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
.+++++..+.. +-+..++..+...+.+.|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999876 4478889999999999999999999999999864
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=3.8e-05 Score=58.91 Aligned_cols=96 Identities=8% Similarity=-0.066 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043191 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207 (414)
Q Consensus 128 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 207 (414)
+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++..... +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3345556667777777777777776654 4466667777777777777777777777776653 3456666667777777
Q ss_pred cCChHHHHHHHHHHHcCC
Q 043191 208 TGHTIVALNLFEEMANGN 225 (414)
Q Consensus 208 ~g~~~~a~~~~~~m~~~~ 225 (414)
.|++++|...|+......
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777766544
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.39 E-value=0.00047 Score=70.54 Aligned_cols=326 Identities=9% Similarity=-0.045 Sum_probs=185.1
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CC----CCC--HhhHHHHHHHHHh
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT--GL----FPD--RYTYNILINCFCK 137 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~----~p~--~~~~~~li~~~~~ 137 (414)
..|+++.+...++.+..... ..+..........+...|++++|..++...... .. .+. ......+...+..
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~-~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVL-LENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred hcCChHHHHHHHHhCCHHHH-hcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34555555555554421111 122222344455566788999999988876532 10 111 1122223344567
Q ss_pred cCCcchHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhc
Q 043191 138 MGRVSHGFVVLGRILRSCFTPDA----VTFTSLIKDLCAESRIMEAAALFTKLRVFGC---EL--DVFTYNTLINGLCRT 208 (414)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~--~~~~~~~li~~~~~~ 208 (414)
.|+++.|...++...+.--..+. ...+.+...+...|++++|...+++.....- .+ ...++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999988763111121 2345566677889999999999988764311 11 123455667778899
Q ss_pred CChHHHHHHHHHHHcCCCCCCccccC-chhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh----cc-
Q 043191 209 GHTIVALNLFEEMANGNGEFGVVCEP-DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV----QC- 281 (414)
Q Consensus 209 g~~~~a~~~~~~m~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~----~~- 281 (414)
|++++|...+++........+....+ ....+..+...+. ..|++++|...+. .... .+
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------------~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW---------------EWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH---------------HhcCHHHHHHHHHHhHHhhhccCch
Confidence 99999999988876532100000001 1112222222222 3466777766665 3222 11
Q ss_pred -ccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCC-CHhhH-----HHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCC
Q 043191 282 -LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP-NVVTY-----NILIRGLCNDGQMDETKHYETVFLLFKRLNSTG 354 (414)
Q Consensus 282 -~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~-----~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~ 354 (414)
....+..+...+...|++++|.+.+++........ ....+ ...+..+...|+.+.|.. ++.......
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~------~l~~~~~~~ 683 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAAN------WLRQAPKPE 683 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHH------HHHhcCCCC
Confidence 12334446667788999999999988875421100 11111 112244455788888777 665544321
Q ss_pred CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCCCC-HHHHHHHHHHHHHcCCcccc
Q 043191 355 LFPD---LYTYNILINCFCKIGRVSSGFVIFGRILPS----CFTPD-AVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 355 ~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a 413 (414)
.... ...+..+..++...|+.++|..++++.... |..++ ..+...+..++.+.|+.++|
T Consensus 684 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 684 FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1111 112345667788899999999999887753 33322 34667777888888988765
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=6.1e-05 Score=63.49 Aligned_cols=171 Identities=15% Similarity=0.136 Sum_probs=116.4
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH--
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD----RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA-- 160 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 160 (414)
......+..+...+.+.|++++|...|+++... .|+ ..++..+..++.+.|++++|...++.+.+.......
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 356667888888999999999999999998765 333 246677888999999999999999999876321111
Q ss_pred HhHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCH-HHHH-----------------HHHHHHHhcCChHHH
Q 043191 161 VTFTSLIKDLCAE--------SRIMEAAALFTKLRVFGCELDV-FTYN-----------------TLINGLCRTGHTIVA 214 (414)
Q Consensus 161 ~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~-~~~~-----------------~li~~~~~~g~~~~a 214 (414)
.++..+..++.+. |++++|.+.|+.+... .|+. ..+. .+...|.+.|++++|
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A 185 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAA 185 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 1344444555544 7889999999999876 3332 2221 233445666777777
Q ss_pred HHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHH
Q 043191 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294 (414)
Q Consensus 215 ~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 294 (414)
...++...+.. |+.. .....+..+..++.
T Consensus 186 ~~~~~~al~~~--------p~~~-------------------------------------------~~~~a~~~l~~~~~ 214 (235)
T TIGR03302 186 INRFETVVENY--------PDTP-------------------------------------------ATEEALARLVEAYL 214 (235)
T ss_pred HHHHHHHHHHC--------CCCc-------------------------------------------chHHHHHHHHHHHH
Confidence 77777766532 2210 01123455667777
Q ss_pred hcCChhHHHHHHHhchhC
Q 043191 295 KISKLKIARELFQSLPRA 312 (414)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~ 312 (414)
+.|++++|..+++.+...
T Consensus 215 ~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 215 KLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HcCCHHHHHHHHHHHHhh
Confidence 789999999988887654
No 106
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.36 E-value=7.1e-07 Score=49.79 Aligned_cols=35 Identities=40% Similarity=0.747 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCH
Q 043191 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394 (414)
Q Consensus 360 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 394 (414)
.+|+++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.36 E-value=0.00027 Score=69.15 Aligned_cols=207 Identities=11% Similarity=0.037 Sum_probs=121.5
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CC-----------------CCCHhh
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GL-----------------FPDRYT 127 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~-----------------~p~~~~ 127 (414)
..+++++|.++.+......| .....|-.+...+.+.++.+.+..+ .+... +. .-+...
T Consensus 43 ~~~~~deai~i~~~~l~~~P--~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~A 118 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHK--KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLA 118 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCC--cceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHH
Confidence 44788888888887777665 3333333333456666665555444 22111 00 012245
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043191 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207 (414)
Q Consensus 128 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 207 (414)
+..+..+|-+.|+.+++..+|+++++.. +-|+.+.|.+...|+.. ++++|.+++.+.... |..
T Consensus 119 l~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 119 LRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 5566667777777777777777777776 45677777777777777 777777777766543 556
Q ss_pred cCChHHHHHHHHHHHcCCCCCCccccCchhh-HHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccH
Q 043191 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAIT-YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286 (414)
Q Consensus 208 ~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~-~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (414)
.+++..+.++|.++... .|+... +..+++.....- + . .--+.++
T Consensus 182 ~kq~~~~~e~W~k~~~~--------~~~d~d~f~~i~~ki~~~~--------------~-~------------~~~~~~~ 226 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY--------NSDDFDFFLRIERKVLGHR--------------E-F------------TRLVGLL 226 (906)
T ss_pred hhcchHHHHHHHHHHhc--------CcccchHHHHHHHHHHhhh--------------c-c------------chhHHHH
Confidence 66777777777777763 333322 222222221110 0 0 1112234
Q ss_pred HHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHH
Q 043191 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329 (414)
Q Consensus 287 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 329 (414)
-.+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 44556677777788888888887776444 5555666666665
No 108
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=2.7e-05 Score=59.26 Aligned_cols=117 Identities=14% Similarity=0.049 Sum_probs=84.6
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 043191 76 VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155 (414)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 155 (414)
.|+......| .+......+...+...|++++|.+.|+.....+ +.+...+..+..++...|+++.|...++...+.+
T Consensus 5 ~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDS--EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCCh--hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555544 345566677777888888888888888877653 3366777778888888888888888888877765
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043191 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY 198 (414)
Q Consensus 156 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 198 (414)
+.+...+..+...+...|++++|...|++..+. .|+...+
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 446677777777888888888888888887765 3444443
No 109
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00062 Score=58.02 Aligned_cols=289 Identities=16% Similarity=0.174 Sum_probs=151.5
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHhhHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcchHHH
Q 043191 69 TPNEALCVFDYMLNMRPSRPPVTSFNILF-GCLAKTKHYDTVLSLFKRLNLTGLFPDR-YTYNILINCFCKMGRVSHGFV 146 (414)
Q Consensus 69 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~ 146 (414)
.+.+|++++..+...+ |+....|.-+ -+|.+..-++-+.+++.--.+. .||. ..-|.......+.=+-..|.+
T Consensus 166 HYQeAIdvYkrvL~dn---~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDN---PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHhcC---hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHH
Confidence 5688999999988764 4455555443 4556777777777777765544 3432 233322222211111111111
Q ss_pred --------------HHHHHHHcCC------------CC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043191 147 --------------VLGRILRSCF------------TP-----DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195 (414)
Q Consensus 147 --------------~~~~~~~~~~------------~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 195 (414)
..+.+.+.++ -| -+..--.|+--|.+.+++.+|..+.+++.-. .|-.
T Consensus 241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~E 318 (557)
T KOG3785|consen 241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYE 318 (557)
T ss_pred HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHH
Confidence 1112222110 01 1112233455678888888888887776411 2222
Q ss_pred HHHHHHH-----HHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhH-HHHHHHHHhhcCCCchhHHHHHhhccchhh
Q 043191 196 FTYNTLI-----NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY-STIIDGLCKEAGSANFLGFSCMASFSALNK 269 (414)
Q Consensus 196 ~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~-~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
.....++ +-........-|.+.|+-.-+++ ..-|+..- .++...+.- ..++++
T Consensus 319 yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa------~ecDTIpGRQsmAs~fFL---------------~~qFdd 377 (557)
T KOG3785|consen 319 YILKGVVFAALGQETGSREHLKIAQQFFQLVGESA------LECDTIPGRQSMASYFFL---------------SFQFDD 377 (557)
T ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc------cccccccchHHHHHHHHH---------------HHHHHH
Confidence 2222222 11112223556777777766665 33222211 111122111 234455
Q ss_pred Hhhhhh-hhhhccccccH-HHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHH-HHHHhcCChhhhhhhhhHHHH
Q 043191 270 MAFYFP-LVRVQCLCLNF-LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI-RGLCNDGQMDETKHYETVFLL 346 (414)
Q Consensus 270 a~~~~~-~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~a~~~~~a~~~ 346 (414)
....+. ...--.+...| -.+..+++..|.+.+|+++|-.+....++ |..+|.+++ ++|.+.+.++.|.. +
T Consensus 378 Vl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~------~ 450 (557)
T KOG3785|consen 378 VLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWD------M 450 (557)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHH------H
Confidence 554444 22221222222 23678888889999999999887665555 666676554 57888888877644 4
Q ss_pred HHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHH
Q 043191 347 FKRLNSTGLFPDLYT-YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTF 397 (414)
Q Consensus 347 ~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 397 (414)
+-.+. -..+..+ ...+..-|-+++.+=-|-+.|+.+... .|++.-|
T Consensus 451 ~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 451 MLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 44433 2223333 334445788888888888888887764 4555544
No 110
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00049 Score=56.30 Aligned_cols=159 Identities=8% Similarity=-0.021 Sum_probs=86.9
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch-HHH
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH-GFV 146 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~-a~~ 146 (414)
|++..++..-...... +.++..-..+-++|...|++.....- .+... .|....+..+-.....-++.+. ..+
T Consensus 22 Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 22 GNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred hHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 4555555544433322 13334444455666666765543332 22111 2333333322222222333222 234
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC
Q 043191 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226 (414)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 226 (414)
+.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++-|.+.++.|.+-.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 55556555444444444555567889999999998887632 23333333455677888999999999998743
Q ss_pred CCCccccCchhhHHHHHHHHHh
Q 043191 227 EFGVVCEPDAITYSTIIDGLCK 248 (414)
Q Consensus 227 ~~~~~~~p~~~~~~~li~~~~~ 248 (414)
+..|.+.|..++.+
T Consensus 168 --------ed~tLtQLA~awv~ 181 (299)
T KOG3081|consen 168 --------EDATLTQLAQAWVK 181 (299)
T ss_pred --------hHHHHHHHHHHHHH
Confidence 56677777777755
No 111
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.33 E-value=9.2e-07 Score=48.93 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC
Q 043191 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392 (414)
Q Consensus 360 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 392 (414)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 112
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=1e-06 Score=49.15 Aligned_cols=35 Identities=40% Similarity=0.780 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCH
Q 043191 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318 (414)
Q Consensus 284 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 318 (414)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 113
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.32 E-value=4.4e-05 Score=58.07 Aligned_cols=121 Identities=13% Similarity=0.031 Sum_probs=96.8
Q ss_pred HHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043191 112 LFKRLNLTGLFP-DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190 (414)
Q Consensus 112 ~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 190 (414)
.|++.... .| +......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|..++++....+
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555544 34 34556667788889999999999999998875 5578889999999999999999999999988765
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHH
Q 043191 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIID 244 (414)
Q Consensus 191 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~ 244 (414)
+.+...+..+...|...|++++|...|+...+ ..|+...+..+..
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~~~ 126 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIE--------ICGENPEYSELKE 126 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hccccchHHHHHH
Confidence 55678888888999999999999999999998 4566655544443
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=0.00016 Score=65.33 Aligned_cols=252 Identities=12% Similarity=0.060 Sum_probs=179.5
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 043191 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213 (414)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 213 (414)
-+.+.|++.+|.-.|+..++.+ +-+...|..|-......++-..|+..+.+..+.. +-|....-+|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3567788999999999998876 5578889999888899999899999999988775 4467788888888999999999
Q ss_pred HHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh---ccccccHHHH
Q 043191 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV---QCLCLNFLCL 289 (414)
Q Consensus 214 a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~---~~~~~~~~~l 289 (414)
|+..|+.-...... |..+..+ +................+....+.|- +... ..+......|
T Consensus 372 Al~~L~~Wi~~~p~-----------y~~l~~a----~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----------YVHLVSA----GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL 436 (579)
T ss_pred HHHHHHHHHHhCcc-----------chhcccc----CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence 99999887653310 0000000 00000000011112223333444443 3333 3577788888
Q ss_pred HHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 043191 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL-YTYNILINC 368 (414)
Q Consensus 290 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~ 368 (414)
--.|--.|++++|...|+......+. |...||-|--.++...+.++|+. .|.+.++. +|+. .....|.-+
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIs------AY~rALqL--qP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAIS------AYNRALQL--QPGYVRVRYNLGIS 507 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHH------HHHHHHhc--CCCeeeeehhhhhh
Confidence 88899999999999999998876443 77899999999999999999988 99999875 6763 455666778
Q ss_pred HHhcCCHHHHHHHHHhhhhC---------CCCCCHHHHHHHHHHHHHcCCcc
Q 043191 369 FCKIGRVSSGFVIFGRILPS---------CFTPDAVTFTSLIKILEINSFFR 411 (414)
Q Consensus 369 ~~~~g~~~~a~~~~~~m~~~---------g~~p~~~~~~~li~~~~~~g~~~ 411 (414)
|...|.+++|.+.|=+.+.. +..++..+|.+|=.++.-.++.+
T Consensus 508 ~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 99999999999988765532 12234567888777777776665
No 115
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.30 E-value=1.1e-06 Score=48.66 Aligned_cols=33 Identities=30% Similarity=0.513 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043191 91 TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP 123 (414)
Q Consensus 91 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 123 (414)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.28 E-value=0.00096 Score=68.30 Aligned_cols=90 Identities=19% Similarity=0.216 Sum_probs=51.4
Q ss_pred HHhcCChhHHHHHHHhchhCCCCCC---HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh----CCCCCC-HHHHHH
Q 043191 293 LCKISKLKIARELFQSLPRAGLMPN---VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS----TGLFPD-LYTYNI 364 (414)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~----~~~~p~-~~~~~~ 364 (414)
+...|+.+.|...+........... ...+..+..++...|++++|.. .+++... .|..++ ..+...
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~------~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEI------ILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHH------HHHHHHHHHHHhCchHHHHHHHHH
Confidence 3445777777777665543211111 1113345556777777777766 5555443 232222 234555
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 365 LINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 365 li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
+..++.+.|+.++|...+.+..+.
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566777888888888887777654
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=0.00041 Score=56.69 Aligned_cols=158 Identities=16% Similarity=0.087 Sum_probs=112.9
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043191 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203 (414)
Q Consensus 124 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 203 (414)
|... ..+-..+...|+-+....+....... .+-|....+..+....+.|++.+|...|.+..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3444 44566677777777777776665433 24466677778888999999999999999887665 778889999999
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhcccc
Q 043191 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLC 283 (414)
Q Consensus 204 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 283 (414)
+|.+.|+++.|..-|.+..+ +.|+..+.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~--------L~~~~p~~-------------------------------------------- 170 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALE--------LAPNEPSI-------------------------------------------- 170 (257)
T ss_pred HHHHccChhHHHHHHHHHHH--------hccCCchh--------------------------------------------
Confidence 99999999999998888887 33433221
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhh
Q 043191 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339 (414)
Q Consensus 284 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 339 (414)
.|.+.-.|.-.|+.+.|..++......+.. |...-..+..+....|++++|..
T Consensus 171 --~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 171 --ANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred --hhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHh
Confidence 222333333448888888888877766443 66666777777888888888777
No 118
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.26 E-value=0.0013 Score=55.90 Aligned_cols=156 Identities=11% Similarity=0.024 Sum_probs=96.4
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHhcCCc
Q 043191 63 GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY-NILINCFCKMGRV 141 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~~~~ 141 (414)
.++..|++.+|+.-|....+.+| .+-.++-.-...|...|+...|+.=|.+..+. +||-..- ..-...+.+.|.+
T Consensus 47 ~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccH
Confidence 44567888888888888876654 44444444455666777777777777776654 5653221 1122345677788
Q ss_pred chHHHHHHHHHHcCCCC--CHH------------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043191 142 SHGFVVLGRILRSCFTP--DAV------------TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~--~~~------------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 207 (414)
+.|..=|+..++....- +.. .....+..+.-.|+...|+.....+.+.. +-|...|..-..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHh
Confidence 88887777777653210 001 11223334555677777777777777654 3466667777777777
Q ss_pred cCChHHHHHHHHHHHc
Q 043191 208 TGHTIVALNLFEEMAN 223 (414)
Q Consensus 208 ~g~~~~a~~~~~~m~~ 223 (414)
.|++..|+.=++...+
T Consensus 202 ~~e~k~AI~Dlk~ask 217 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASK 217 (504)
T ss_pred cCcHHHHHHHHHHHHh
Confidence 7777777666665554
No 119
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=0.00021 Score=67.38 Aligned_cols=241 Identities=12% Similarity=0.090 Sum_probs=161.4
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-C--------CCCCHhhHHHHHH
Q 043191 63 GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-G--------LFPDRYTYNILIN 133 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g--------~~p~~~~~~~li~ 133 (414)
-++..|+.+.|.+-.+.+ .+...|..|.+.|.+.++.+-|.-.+-.|... | -.|+ .+=..+.-
T Consensus 737 fyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred EEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 346778999999888877 44567999999999999888877666666422 1 1122 22233334
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 043191 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213 (414)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 213 (414)
.....|.+++|+.+|.+-++. ..|=+.|-..|.|++|.++-+.=-...+ ..||.....-+-..++.+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHH
Confidence 456789999999999988764 3455677889999999998765433222 3456666666777888999
Q ss_pred HHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHh--hccchhhHhhhhhhhhhccccccHHHHHH
Q 043191 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA--SFSALNKMAFYFPLVRVQCLCLNFLCLID 291 (414)
Q Consensus 214 a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~li~ 291 (414)
|++.|++......+ +.--..-|-.-|.-|.+..+.+....+.... ..|.++.|+.++...+. |-++++
T Consensus 877 AleyyEK~~~hafe----v~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------~fs~Vr 946 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFE----VFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------YFSMVR 946 (1416)
T ss_pred HHHHHHhcCChHHH----HHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------hhhhee
Confidence 99888765432200 0001112333455666666666555554433 77888888888874332 667778
Q ss_pred HHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhh
Q 043191 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339 (414)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 339 (414)
..|-.|+.++|-++-++-. |....-.+.+.|-..|++.+|..
T Consensus 947 I~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred eEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHH
Confidence 8888899999988877543 33444457788888888888877
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.00099 Score=59.36 Aligned_cols=201 Identities=9% Similarity=0.062 Sum_probs=140.0
Q ss_pred CHHhHHHHHHHHHhcCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 043191 69 TPNEALCVFDYMLNMRP-SRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147 (414)
Q Consensus 69 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 147 (414)
++.++...-+.+...+. ..|+...+...+........-..+..++-+..+. .-...-|...+.. ...|+++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~~-~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQT-YLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHHH-HHhcccchHHHH
Confidence 34444444444443221 1456666666666555444433343433332221 1233446655544 477899999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC
Q 043191 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226 (414)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 226 (414)
++.++..- +-|..........+.+.|+.++|.+.++++... .|+ ....-.+..+|.+.|++.+|..+++......
T Consensus 329 l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~- 404 (484)
T COG4783 329 LQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND- 404 (484)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-
Confidence 99988763 446666677778899999999999999999877 566 5667778899999999999999999998764
Q ss_pred CCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHH
Q 043191 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306 (414)
Q Consensus 227 ~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 306 (414)
+-|...|..|-.+|...|+...+ ..+..+.|...|+++.|...+
T Consensus 405 ------p~dp~~w~~LAqay~~~g~~~~a------------------------------~~A~AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 405 ------PEDPNGWDLLAQAYAELGNRAEA------------------------------LLARAEGYALAGRLEQAIIFL 448 (484)
T ss_pred ------CCCchHHHHHHHHHHHhCchHHH------------------------------HHHHHHHHHhCCCHHHHHHHH
Confidence 67888999999999988653332 223556777889999999988
Q ss_pred HhchhC
Q 043191 307 QSLPRA 312 (414)
Q Consensus 307 ~~m~~~ 312 (414)
....+.
T Consensus 449 ~~A~~~ 454 (484)
T COG4783 449 MRASQQ 454 (484)
T ss_pred HHHHHh
Confidence 887665
No 121
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.25 E-value=0.001 Score=56.52 Aligned_cols=263 Identities=12% Similarity=0.028 Sum_probs=167.5
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----hh------------H
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTS-FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR----YT------------Y 128 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~------------~ 128 (414)
.-|+...|+.=|+.+.+.. ||... --.-...+.+.|.+++|..=|+...... |+. .. .
T Consensus 84 AmGksk~al~Dl~rVlelK---pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l 158 (504)
T KOG0624|consen 84 AMGKSKAALQDLSRVLELK---PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVL 158 (504)
T ss_pred hhcCCccchhhHHHHHhcC---ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHH
Confidence 3445555555555555542 33221 1122234567778888888777776552 211 11 1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043191 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208 (414)
Q Consensus 129 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 208 (414)
...+..+...|+...|++....+++.. +-|...|..-..+|...|+...|+.=++...+.. .-+..++--+-..+...
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhh
Confidence 223344556788899999999988875 6688888888999999999999988777776554 33556666667778888
Q ss_pred CChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhccc--cc-
Q 043191 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQCL--CL- 284 (414)
Q Consensus 209 g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~--~~- 284 (414)
|+.+.++...++..+ +.||...+-..-+.+-+... ........+..+.+-++....+ ..+..|. ..
T Consensus 237 gd~~~sL~~iRECLK--------ldpdHK~Cf~~YKklkKv~K--~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 237 GDAENSLKEIRECLK--------LDPDHKLCFPFYKKLKKVVK--SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred hhHHHHHHHHHHHHc--------cCcchhhHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 999999999998887 56776544433332222100 0111122234556666666665 4444443 22
Q ss_pred --cHHHHHHHHHhcCChhHHHHHHHhchhCCCCC-CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC
Q 043191 285 --NFLCLIDGLCKISKLKIARELFQSLPRAGLMP-NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353 (414)
Q Consensus 285 --~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~ 353 (414)
.+..+-.++...+++.+|++.-.+..+. .| |+.++.--..+|....+++.|+. -|+...+.
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~------dye~A~e~ 370 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIH------DYEKALEL 370 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHH------HHHHHHhc
Confidence 3444667778889999999998888764 34 47777777788888888888777 55555543
No 122
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=4.8e-05 Score=67.85 Aligned_cols=123 Identities=17% Similarity=0.196 Sum_probs=103.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 043191 94 NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173 (414)
Q Consensus 94 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 173 (414)
..|+..+...++++.|+.+|+++.+.. |+ ....+++.+...++-.+|.+++.+.++.. +.+......-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 455666677899999999999999773 55 44557888888888899999999998764 55777788888889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 174 SRIMEAAALFTKLRVFGCELD-VFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 174 g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
++++.|+++.+++.+. .|+ ..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999987 455 55999999999999999999999998764
No 123
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.22 E-value=1.9e-05 Score=55.47 Aligned_cols=78 Identities=18% Similarity=0.336 Sum_probs=50.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCC--------cchHHHHHHHHHHcCCCCCHHhHHH
Q 043191 95 ILFGCLAKTKHYDTVLSLFKRLNLTGL-FPDRYTYNILINCFCKMGR--------VSHGFVVLGRILRSCFTPDAVTFTS 165 (414)
Q Consensus 95 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (414)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- ....+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 445555555777777777777777777 7777777777777665431 2334556666666666666666666
Q ss_pred HHHHHHh
Q 043191 166 LIKDLCA 172 (414)
Q Consensus 166 li~~~~~ 172 (414)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6655443
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00019 Score=58.66 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=111.8
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 043191 74 LCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153 (414)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 153 (414)
-++.+++..... ..+......-...|.+.+++++|++...... +.+....=+..+.+..+++.|.+.+++|.+
T Consensus 93 ~~l~E~~a~~~~-~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 93 ASLYELVADSTD-GSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHhhcc-chhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455544443 3333333444566788999999998877521 333444445566778888999999999987
Q ss_pred cCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCC
Q 043191 154 SCFTPDAVTFTSLIKDLCA----ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG 229 (414)
Q Consensus 154 ~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 229 (414)
.. +-.|.+-|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+-...++...|++++|..++++...+.
T Consensus 166 id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd---- 237 (299)
T KOG3081|consen 166 ID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD---- 237 (299)
T ss_pred cc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc----
Confidence 53 55666666666655 45688899999999764 37888889989999999999999999999998765
Q ss_pred ccccCchhhHHHHHHHHHhhcCC
Q 043191 230 VVCEPDAITYSTIIDGLCKEAGS 252 (414)
Q Consensus 230 ~~~~p~~~~~~~li~~~~~~~~~ 252 (414)
.-+..+...+|-.-...|.+
T Consensus 238 ---~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 238 ---AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred ---CCCHHHHHHHHHHHHHhCCC
Confidence 34555666666555555544
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.17 E-value=0.0014 Score=64.42 Aligned_cols=131 Identities=6% Similarity=0.021 Sum_probs=76.2
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCcchHHHHHHHHHHcC----------
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY-TYNILINCFCKMGRVSHGFVVLGRILRSC---------- 155 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------- 155 (414)
..+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+.+..+ .+...-
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 467788999999999999999999999976665 45433 334444456666665555444 222210
Q ss_pred --------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 156 --------FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 156 --------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+.-+...+..+..+|-+.|+.++|..+++++.+.. +-|..+.|.+...|... ++++|.+++.+...
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 01111344444455555555555555555555544 33455555555555555 55555555555443
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.00023 Score=63.21 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=48.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHH
Q 043191 102 KTKHYDTVLSLFKRLNLTGLFPD-RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD-AVTFTSLIKDLCAESRIMEA 179 (414)
Q Consensus 102 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a 179 (414)
..|++++|+..++.+... .|+ ..........+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|+..+|
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 344445555555544433 232 222233334444445555555555544443 222 23333344444555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043191 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218 (414)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 218 (414)
+.++.+..... +-|...|..|.++|...|+..++..-.
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 55444444332 334444555545444444444433333
No 127
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.17 E-value=3.7e-05 Score=68.87 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=57.8
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043191 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRS--CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201 (414)
Q Consensus 124 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 201 (414)
+......+++.+....+.+.+..++-++... ....-..|..++++.|.+.|..++++.++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444444444444444455555555444433 11112223345555555555555555555555555555555555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHh
Q 043191 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248 (414)
Q Consensus 202 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~ 248 (414)
|..+.+.|++..|.++..+|...+ ...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe------~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQE------EFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhh------ccCCchHHHHHHHHHHH
Confidence 555555555555555555555444 33344444444444444
No 128
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00065 Score=61.04 Aligned_cols=302 Identities=11% Similarity=0.036 Sum_probs=178.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCC
Q 043191 97 FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD-AVTFTSLIKDLCAESR 175 (414)
Q Consensus 97 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 175 (414)
..+.+..|+++.|+..|.+..... ++|...|..-..+|+..|++++|++=-.+-.+. .|+ ...|+..-.++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 345678899999999999987664 348888999999999999999998766665554 555 3568888888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH---HHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcC-
Q 043191 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVA---LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG- 251 (414)
Q Consensus 176 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a---~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~- 251 (414)
+++|+.-|.+-.+.. +-|...++-+..++.......+. -.++.......... .......|..++..+-+...
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~---~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTN---YSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhh---hhhccHHHHHHHHHhhcCcHh
Confidence 999999999887764 44677788888777211111000 01111111100000 00011122222222211100
Q ss_pred -------------------------------------C--------------------------CchhHHHHHhhccchh
Q 043191 252 -------------------------------------S--------------------------ANFLGFSCMASFSALN 268 (414)
Q Consensus 252 -------------------------------------~--------------------------~~~~~~~~~~~~~~~~ 268 (414)
. ......+......++.
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 0 0000011111344455
Q ss_pred hHhhhhh-hhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHH-------HHhcCChhhhhhh
Q 043191 269 KMAFYFP-LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG-------LCNDGQMDETKHY 340 (414)
Q Consensus 269 ~a~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-------~~~~g~~~~a~~~ 340 (414)
.+.+.+. ......+..-++....+|...|.+.++...-....+.|.. ...-|+.+-.+ |.+.++++.+..
T Consensus 242 ~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~- 319 (539)
T KOG0548|consen 242 TAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK- 319 (539)
T ss_pred HHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH-
Confidence 5555555 3333433444555666777777777776666665555433 23334444444 444455555555
Q ss_pred hhHHHHHHHHHhCCCCCCHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHH
Q 043191 341 ETVFLLFKRLNSTGLFPDLYT-------------------------YNILINCFCKIGRVSSGFVIFGRILPSCFTPDAV 395 (414)
Q Consensus 341 ~~a~~~~~~m~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 395 (414)
.+.+....-..|+..+ ...-...+.+.|++..|++.|.++++.. +-|..
T Consensus 320 -----~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~ 393 (539)
T KOG0548|consen 320 -----YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDAR 393 (539)
T ss_pred -----HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhH
Confidence 6666554433333222 1112345778999999999999999975 44678
Q ss_pred HHHHHHHHHHHcCCcccc
Q 043191 396 TFTSLIKILEINSFFRQV 413 (414)
Q Consensus 396 ~~~~li~~~~~~g~~~~a 413 (414)
.|..-.-+|.+.|.+..|
T Consensus 394 lYsNRAac~~kL~~~~~a 411 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEA 411 (539)
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 999999999999988665
No 129
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.15 E-value=5.1e-05 Score=53.31 Aligned_cols=80 Identities=11% Similarity=0.137 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 043191 129 NILINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTSLIKDLCAES--------RIMEAAALFTKLRVFGCELDVFTYN 199 (414)
Q Consensus 129 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~~~ 199 (414)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666677999999999999999999 999999999999988754 2446788999999999999999999
Q ss_pred HHHHHHHhc
Q 043191 200 TLINGLCRT 208 (414)
Q Consensus 200 ~li~~~~~~ 208 (414)
.++..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999987653
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.13 E-value=0.0015 Score=63.32 Aligned_cols=97 Identities=12% Similarity=0.078 Sum_probs=44.4
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043191 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204 (414)
Q Consensus 125 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 204 (414)
...+..|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|+..+++..... +-+......+..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHH
Confidence 4444444444445555555555555544432 2223334444444455555555555555444432 2223334444444
Q ss_pred HHhcCChHHHHHHHHHHHc
Q 043191 205 LCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 205 ~~~~g~~~~a~~~~~~m~~ 223 (414)
+.+.|++++|..+|++...
T Consensus 164 l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 164 WDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHHhcchHHHHHHHHHHHh
Confidence 4445555555555555443
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00022 Score=54.92 Aligned_cols=125 Identities=13% Similarity=0.085 Sum_probs=86.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH--HhHHH
Q 043191 92 SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR----YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA--VTFTS 165 (414)
Q Consensus 92 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 165 (414)
.|..++..+ ..++...+...++.+.+.. |+. ...-.+...+...|++++|...|+........++. ...-.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344455544 4778888888888887652 322 22333556777889999999999998887522222 23445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043191 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221 (414)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 221 (414)
|...+...|++++|+..++..... ......+.....+|.+.|++++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677788899999999998775433 234556777888899999999999888763
No 132
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.07 E-value=4.5e-06 Score=44.96 Aligned_cols=31 Identities=29% Similarity=0.633 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 043191 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCF 390 (414)
Q Consensus 360 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 390 (414)
.+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999999875
No 133
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.03 E-value=6.5e-06 Score=44.30 Aligned_cols=31 Identities=29% Similarity=0.688 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHhchhCCC
Q 043191 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGL 314 (414)
Q Consensus 284 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 314 (414)
++|+++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
No 134
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.005 Score=58.54 Aligned_cols=304 Identities=12% Similarity=0.059 Sum_probs=145.5
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 146 (414)
-|-+++|+.++++-.+ |..|=..|-..|.|++|.++-+.=.+-. -..||..-..-+-..++.+.|++
T Consensus 813 LgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHH
Confidence 3556666666665543 2233344455566666665544322111 12233333333334444444444
Q ss_pred HHHH----------HHHcC---------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----------C-------
Q 043191 147 VLGR----------ILRSC---------FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF----------G------- 190 (414)
Q Consensus 147 ~~~~----------~~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------g------- 190 (414)
.|++ |+... -..|...|..-..-+-..|+.+.|+.+|...+.. |
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~ 959 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAAR 959 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHH
Confidence 4332 11111 0123333444444444556666666666554321 0
Q ss_pred ---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccch
Q 043191 191 ---CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSAL 267 (414)
Q Consensus 191 ---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~ 267 (414)
-.-|....-.|.+.|-..|++.+|...|.+... +...|+.|-.++-.+.......+....+.
T Consensus 960 iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------------fsnAIRlcKEnd~~d~L~nlal~s~~~d~ 1024 (1416)
T KOG3617|consen 960 IAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------------FSNAIRLCKENDMKDRLANLALMSGGSDL 1024 (1416)
T ss_pred HHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------------HHHHHHHHHhcCHHHHHHHHHhhcCchhH
Confidence 012455555677777777888888777776652 33444443332222222222222222333
Q ss_pred hhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhc--------hhC--CCCCCHhhHHHHHHHHHhcCChhhh
Q 043191 268 NKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSL--------PRA--GLMPNVVTYNILIRGLCNDGQMDET 337 (414)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--------~~~--g~~p~~~~~~~li~~~~~~g~~~~a 337 (414)
-.+...++-.. ..+.-.+..|-+.|.+.+|+++-=+- +.. ....|+...+--.+-++...++++|
T Consensus 1025 v~aArYyEe~g-----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekA 1099 (1416)
T KOG3617|consen 1025 VSAARYYEELG-----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKA 1099 (1416)
T ss_pred HHHHHHHHHcc-----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHH
Confidence 33334443111 01223445566777777776642211 111 1223556666666666677777766
Q ss_pred hhh-------hhHHHHH--------HHHHh-----CCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC
Q 043191 338 KHY-------ETVFLLF--------KRLNS-----TGLFPDL----YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393 (414)
Q Consensus 338 ~~~-------~~a~~~~--------~~m~~-----~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 393 (414)
..+ +.|+++- ++|.+ +.-.|+. .....+...|.++|.+..|-+-|-+.=++
T Consensus 1100 V~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK----- 1174 (1416)
T KOG3617|consen 1100 VNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK----- 1174 (1416)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----
Confidence 552 2222221 11111 1112333 34566677888899998888776654332
Q ss_pred HHHHHHHHHHHHHcCCccc
Q 043191 394 AVTFTSLIKILEINSFFRQ 412 (414)
Q Consensus 394 ~~~~~~li~~~~~~g~~~~ 412 (414)
...++++.+.|+.++
T Consensus 1175 ----l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1175 ----LSAMRALLKSGDTQK 1189 (1416)
T ss_pred ----HHHHHHHHhcCCcce
Confidence 345677777887765
No 135
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.03 E-value=0.00025 Score=66.02 Aligned_cols=107 Identities=17% Similarity=0.160 Sum_probs=55.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhcc
Q 043191 202 INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQC 281 (414)
Q Consensus 202 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 281 (414)
+.+-....+|.+|+.+++.+.... .-..-|..+.+-|... |+++.|.++|.-
T Consensus 739 ieaai~akew~kai~ildniqdqk--------~~s~yy~~iadhyan~---------------~dfe~ae~lf~e----- 790 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--------TASGYYGEIADHYANK---------------GDFEIAEELFTE----- 790 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--------cccccchHHHHHhccc---------------hhHHHHHHHHHh-----
Confidence 444555666777777766666533 1122344444444443 445555555441
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhh
Q 043191 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339 (414)
Q Consensus 282 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 339 (414)
...++-.|.+|.+.|+++.|.++-.+.. |.......|-.-..-+-..|++.+|++
T Consensus 791 -~~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 791 -ADLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred -cchhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhh
Confidence 1124556666666666666666655432 233344445444445555555555554
No 136
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=0.0012 Score=54.94 Aligned_cols=191 Identities=13% Similarity=0.115 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHH-HHHHH
Q 043191 93 FNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS-LIKDL 170 (414)
Q Consensus 93 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~ 170 (414)
+.+.+.-+.+..+++.|++++....++ .| +....+.|..+|....++..|-..|+++-.. .|...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 555666666677777777777666555 23 5556666667777777777777777776554 344444432 12345
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHh
Q 043191 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLING--LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248 (414)
Q Consensus 171 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~ 248 (414)
-+.+.+..|+.+...|... ++...-..-+.+ ....+++..+..++++....+ +..+ +++.-|
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---------~Ad~---~in~gC- 152 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---------EADG---QINLGC- 152 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------ccch---hccchh-
Confidence 5566666777766666431 222111111111 123455555555555544322 1111 111000
Q ss_pred hcCCCchhHHHHHhhccchhhHhhhhh-hhhh--ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCC
Q 043191 249 EAGSANFLGFSCMASFSALNKMAFYFP-LVRV--QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315 (414)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 315 (414)
...+.|..+.|.+-|. ..+. -.....||..+..| +.|+.+.|+++..++.+.|++
T Consensus 153 -----------llykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 153 -----------LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred -----------eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 0113456666666665 3322 22334455444433 335666666666666666654
No 137
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.01 E-value=0.013 Score=54.38 Aligned_cols=327 Identities=13% Similarity=0.079 Sum_probs=201.7
Q ss_pred hhhhchhhhhhHHHHHHHHhhhcCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043191 38 TLRLTVKDRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLN 117 (414)
Q Consensus 38 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 117 (414)
.+..-+.+...+...++.......+......-++..-..|+...-.- ..=+..|-.-+..+.++|++......|+...
T Consensus 52 al~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m--HkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrAL 129 (835)
T KOG2047|consen 52 ALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM--HKMPRIWLDYLQFLIKQGLITRTRRTFDRAL 129 (835)
T ss_pred HHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 33333445555666665554444433333333333333333322211 1224668888888889999999999999866
Q ss_pred hC-CCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------
Q 043191 118 LT-GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF------- 189 (414)
Q Consensus 118 ~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------- 189 (414)
.. .+.....+|...+......+-++-+..+|++.++. ++..-+-.|..+++.+++++|.+.+......
T Consensus 130 raLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~ 205 (835)
T KOG2047|consen 130 RALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKK 205 (835)
T ss_pred HhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhc
Confidence 43 44445667888888888888899999999999865 4444677888889999999988777665311
Q ss_pred ---------------------------------C--CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccc
Q 043191 190 ---------------------------------G--CELD--VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC 232 (414)
Q Consensus 190 ---------------------------------g--~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 232 (414)
| .-+| ...|+.|..-|.+.|++++|.++|++... -
T Consensus 206 gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~--------~ 277 (835)
T KOG2047|consen 206 GKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ--------T 277 (835)
T ss_pred ccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--------h
Confidence 1 1122 24688999999999999999999999887 3
Q ss_pred cCchhhHHHHHHHHHhhcCCCchhHHHHH-h------hccchhhHhhhhh-hh------------hh-ccccccHHHHHH
Q 043191 233 EPDAITYSTIIDGLCKEAGSANFLGFSCM-A------SFSALNKMAFYFP-LV------------RV-QCLCLNFLCLID 291 (414)
Q Consensus 233 ~p~~~~~~~li~~~~~~~~~~~~~~~~~~-~------~~~~~~~a~~~~~-~~------------~~-~~~~~~~~~li~ 291 (414)
..+...|+.+.++|+.-....-....... - ...+++-....++ +. +. +.++..|..-+.
T Consensus 278 v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~ 357 (835)
T KOG2047|consen 278 VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK 357 (835)
T ss_pred heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh
Confidence 45666777777777653221100000000 0 0011111111111 10 01 223333433333
Q ss_pred HHHhcCChhHHHHHHHhchhCCCCC------CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCC---HHHH
Q 043191 292 GLCKISKLKIARELFQSLPRAGLMP------NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD---LYTY 362 (414)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~---~~~~ 362 (414)
+..|+..+....|.+.... +.| -...|..+..-|-..|+++.|.. +|++..+...+-- ..+|
T Consensus 358 --l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv------ifeka~~V~y~~v~dLa~vw 428 (835)
T KOG2047|consen 358 --LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARV------IFEKATKVPYKTVEDLAEVW 428 (835)
T ss_pred --hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHH------HHHHhhcCCccchHHHHHHH
Confidence 2346677777888877553 222 13467888889999999999999 9999887644322 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 363 NILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 363 ~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
-.-...=.+..+++.|+++++....
T Consensus 429 ~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 429 CAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 4444455577888999998887764
No 138
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.01 E-value=0.00016 Score=57.55 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=42.4
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----------------CCcchHHHHHHHHHHcCCCCCHHhHHHHH
Q 043191 104 KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM----------------GRVSHGFVVLGRILRSCFTPDAVTFTSLI 167 (414)
Q Consensus 104 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (414)
|..+=....++.|.+-|+.-|..+|+.|+..+=+. .+.+-|++++++|...|+-||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 34444444444555555555555555555443321 12355777777777777777777777777
Q ss_pred HHHHhcCC
Q 043191 168 KDLCAESR 175 (414)
Q Consensus 168 ~~~~~~g~ 175 (414)
+.+++.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 77777664
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.98 E-value=0.011 Score=56.72 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=50.6
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043191 63 GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGC--LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 140 (414)
+.+..+++..|+...+.+.+..| + ..|..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.++
T Consensus 18 d~ld~~qfkkal~~~~kllkk~P---n-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHP---N-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCC---C-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 33445555555555555555433 1 112222222 23455555555555544433322 44555555555555555
Q ss_pred cchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 043191 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178 (414)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 178 (414)
.++|..+|++..+. .|+......+..+|++.+.+.+
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 55555555555443 3344444444455555444443
No 140
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.98 E-value=0.00017 Score=64.77 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=102.6
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT--GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (414)
-+......++..+....+.+.+..++-+.... ....-..|.+++++.|.+.|..+.++.++..=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 56667777888888888899999998888754 2223345667999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043191 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208 (414)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 208 (414)
||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998877777778887777777766
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.97 E-value=0.0092 Score=57.29 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=87.3
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 043191 101 AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC--FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178 (414)
Q Consensus 101 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 178 (414)
...+++..|+....++.+. .||.. |..++.+ +.+.|+.++|..+++.....+.. |..|...+-..|.+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4567788999988887765 45543 4444554 45889999999888888776644 88899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHH
Q 043191 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV----ALNLFEE 220 (414)
Q Consensus 179 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~ 220 (414)
|..+|++.... .|+......+..+|.+.+.+.+ |+++++.
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~ 139 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN 139 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998866 6777777788888888887654 4555553
No 142
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.95 E-value=0.0023 Score=59.93 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=57.0
Q ss_pred HHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043191 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370 (414)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 370 (414)
.+.....++.+|+.+++.++.... -..-|..+.+.|+..|+++.|++ +|-+.. .++-.|..|.
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~------lf~e~~---------~~~dai~my~ 802 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEE------LFTEAD---------LFKDAIDMYG 802 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHH------HHHhcc---------hhHHHHHHHh
Confidence 344455566666666666655432 23345556666666666666666 554322 2344455666
Q ss_pred hcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 371 KIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 371 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
+.|+|+.|.++-.+... -.-....|-+-..-+-++|++.+|
T Consensus 803 k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred ccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhh
Confidence 66666666666555432 233445555555555566666555
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.94 E-value=0.00017 Score=64.43 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=79.4
Q ss_pred HHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043191 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILIN 367 (414)
Q Consensus 288 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 367 (414)
.|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+ ++.+..... +-+...+..-..
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~------ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIR------LLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHH------HHHHHHHhC-CCCHHHHHHHHH
Confidence 45666666778888888888887763 33 34456677777777666666 777776542 225666666667
Q ss_pred HHHhcCCHHHHHHHHHhhhhCCCCCCH-HHHHHHHHHHHHcCCcccc
Q 043191 368 CFCKIGRVSSGFVIFGRILPSCFTPDA-VTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 368 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a 413 (414)
.|.+.++.+.|+.+.+++.+. .|+. .+|..|..+|.+.|+++.|
T Consensus 243 fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHH
Confidence 778888888888888888874 4544 5888888888888888776
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0085 Score=48.96 Aligned_cols=155 Identities=17% Similarity=0.080 Sum_probs=94.2
Q ss_pred CCCCCHHhHHHHHHHHHhcCCC---CCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH-HHHHHhcC
Q 043191 65 ITSITPNEALCVFDYMLNMRPS---RPPVT-SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNIL-INCFCKMG 139 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~---~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~~ 139 (414)
....++++.++++..+....+. .++.. .|..++-+....|+.+.|...++.+..+ .|.+.-...+ .-.+-..|
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATG 100 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhh
Confidence 3456677777777777654321 12322 3445555566677777777777777655 2432221111 11233456
Q ss_pred CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043191 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 219 (414)
++++|.++|+.+++.+ +.|..++-.=+...-..|+--+|++-+....+. +..|...|.-+-..|...|++++|.-.++
T Consensus 101 ~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 7777777777777765 556666665555555566666666666555543 24577777777777777777777777777
Q ss_pred HHHc
Q 043191 220 EMAN 223 (414)
Q Consensus 220 ~m~~ 223 (414)
++.-
T Consensus 179 E~ll 182 (289)
T KOG3060|consen 179 ELLL 182 (289)
T ss_pred HHHH
Confidence 7765
No 145
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.89 E-value=0.024 Score=53.67 Aligned_cols=205 Identities=16% Similarity=0.121 Sum_probs=135.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccC
Q 043191 155 CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234 (414)
Q Consensus 155 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p 234 (414)
.+.-+...|..|.-++..+|+++.+.+.|++....- --....|+.+-..|...|.-..|..+++.-.... -.|
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~------~~p 390 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS------EQP 390 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc------cCC
Confidence 456688999999999999999999999999987543 3356789999999999999999999998877643 235
Q ss_pred chhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhh------hccccccHHHHHHHHHhc-----------
Q 043191 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVR------VQCLCLNFLCLIDGLCKI----------- 296 (414)
Q Consensus 235 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~------~~~~~~~~~~li~~~~~~----------- 296 (414)
+..+--.++...|-. ..+..+++.++-. ... .......|..+.-+|...
T Consensus 391 s~~s~~Lmasklc~e-------------~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~ 457 (799)
T KOG4162|consen 391 SDISVLLMASKLCIE-------------RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERD 457 (799)
T ss_pred CcchHHHHHHHHHHh-------------chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHH
Confidence 444433344333322 2344444444333 211 022233333333333221
Q ss_pred CChhHHHHHHHhchhCCC-CCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043191 297 SKLKIARELFQSLPRAGL-MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV 375 (414)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 375 (414)
....++++.+++..+.+. .|+...|-++ -|+..++++.|.+ ..++..+.+-.-+...|..|.-.+...+++
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~------~~~eaL~l~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALD------YAREALALNRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHH------HHHHHHHhcCCccHHHHHHHHHHHhhhhhh
Confidence 124567777777766543 3444444443 4566677777777 888888876666888999888888899999
Q ss_pred HHHHHHHHhhhh
Q 043191 376 SSGFVIFGRILP 387 (414)
Q Consensus 376 ~~a~~~~~~m~~ 387 (414)
.+|+.+.+...+
T Consensus 530 ~~Al~vvd~al~ 541 (799)
T KOG4162|consen 530 KEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHHHHH
Confidence 999998887664
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.89 E-value=0.00031 Score=49.08 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=42.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043191 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210 (414)
Q Consensus 131 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 210 (414)
+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.|+...... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3344444455555555555444432 2222344444444555555555555555544432 2223344455555555555
Q ss_pred hHHHHHHHHHHHc
Q 043191 211 TIVALNLFEEMAN 223 (414)
Q Consensus 211 ~~~a~~~~~~m~~ 223 (414)
+++|...+....+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555443
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.88 E-value=0.0005 Score=52.90 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=89.6
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCC
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPP---VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR--YTYNILINCFCKMGR 140 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~ 140 (414)
..++...+...++.+....+ .+ ..+.-.+...+...|++++|...|+........|+. .....|...+...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~--~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYP--SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 45788999999999998876 33 233445667888999999999999999987533322 234456788899999
Q ss_pred cchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043191 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186 (414)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 186 (414)
+++|+..++..... ......+......|.+.|++++|...|+..
T Consensus 101 ~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 99999999775433 334556777888999999999999999763
No 148
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.011 Score=57.53 Aligned_cols=192 Identities=16% Similarity=0.131 Sum_probs=93.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHH
Q 043191 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYS 240 (414)
Q Consensus 161 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~ 240 (414)
..|..+..+-.+.|.+.+|++-|-+. -|...|.-++....+.|.|++-.+.+....+.. -.|... +
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~------~E~~id--~ 1170 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV------REPYID--S 1170 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh------cCccch--H
Confidence 34455555555555555554444322 244445555555555555555555555444443 233322 2
Q ss_pred HHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhh
Q 043191 241 TIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320 (414)
Q Consensus 241 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 320 (414)
.+|-+|++.+ ++.+..++.. .||......+.+-|...+.++.|.-+|. +..-
T Consensus 1171 eLi~AyAkt~---------------rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN 1222 (1666)
T KOG0985|consen 1171 ELIFAYAKTN---------------RLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSN 1222 (1666)
T ss_pred HHHHHHHHhc---------------hHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH---------Hhhh
Confidence 3444554432 2222211111 2334444445555555555555555554 3344
Q ss_pred HHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHH
Q 043191 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400 (414)
Q Consensus 321 ~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 400 (414)
|.-|...+...|++..|.. .-++. -+..||..+-.+|...+.+.-| +|...++.....-...|
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD------~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVD------AARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEEL 1285 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHH------Hhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHH
Confidence 6666666777777666544 22222 2677888887788776655433 23333333344444445
Q ss_pred HHHHHHcCCcc
Q 043191 401 IKILEINSFFR 411 (414)
Q Consensus 401 i~~~~~~g~~~ 411 (414)
+..|...|-|+
T Consensus 1286 i~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1286 IEYYQDRGYFE 1296 (1666)
T ss_pred HHHHHhcCcHH
Confidence 55554444444
No 149
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.022 Score=52.27 Aligned_cols=205 Identities=12% Similarity=0.084 Sum_probs=125.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHH--HHHHHH
Q 043191 94 NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS--LIKDLC 171 (414)
Q Consensus 94 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~ 171 (414)
-+=+..+.+.+++++|.+..+++...+ +-+...+..=+-+..+.+.+++|+.+.+.-... .+++. +=.+||
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~------~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL------LVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh------hhcchhhHHHHHH
Confidence 344566778899999999999998765 335666777777888999999999665443211 11122 244554
Q ss_pred --hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhh
Q 043191 172 --AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249 (414)
Q Consensus 172 --~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~ 249 (414)
+.+..++|+..++-.. ..|..+...-.+.+.+.|++++|+++|+.+.+++.. .-+...-..++.+-...
T Consensus 89 ~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-----d~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-----DQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHhh
Confidence 6789999999988332 223336666677888999999999999999776521 11111111121111110
Q ss_pred -c----C---CC---chh---HHHHHhhccchhhHhhhhh-hhhh--------cccccc--------HHHHHHHHHhcCC
Q 043191 250 -A----G---SA---NFL---GFSCMASFSALNKMAFYFP-LVRV--------QCLCLN--------FLCLIDGLCKISK 298 (414)
Q Consensus 250 -~----~---~~---~~~---~~~~~~~~~~~~~a~~~~~-~~~~--------~~~~~~--------~~~li~~~~~~~~ 298 (414)
+ . .+ .-. +...++..|++.+|.+.+. ..+. ..+..- -.-|.-.+-..|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 0 0 00 001 1122347899999999988 4111 111000 1124456678899
Q ss_pred hhHHHHHHHhchhCCC
Q 043191 299 LKIARELFQSLPRAGL 314 (414)
Q Consensus 299 ~~~a~~~~~~m~~~g~ 314 (414)
.++|..+|...+....
T Consensus 240 t~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNP 255 (652)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 9999999998877654
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.00071 Score=49.92 Aligned_cols=99 Identities=9% Similarity=-0.027 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCC--CCHHhHHHHH
Q 043191 92 SFNILFGCLAKTKHYDTVLSLFKRLNLTGL--FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT--PDAVTFTSLI 167 (414)
Q Consensus 92 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li 167 (414)
++..+...+.+.|++++|.+.|+.+....- ......+..+..++.+.|+++.|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455666667777788888888877765421 011345555777777777888888888777664211 1234566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 043191 168 KDLCAESRIMEAAALFTKLRVFG 190 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g 190 (414)
.++.+.|+.++|.+.++++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777788888888887777663
No 151
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.82 E-value=0.00051 Score=54.79 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------------cCChHHHHHHHHHHHcCCCCCCccccCchh
Q 043191 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR----------------TGHTIVALNLFEEMANGNGEFGVVCEPDAI 237 (414)
Q Consensus 174 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----------------~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~ 237 (414)
|.++-....+..|.+.|+.-|..+|+.|+..+=+ -.+-+-|++++++|+..| +.||..
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~g------V~Pd~E 139 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNG------VMPDKE 139 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcC------CCCcHH
Confidence 3444444444444444444444444444444432 123567999999999999 999999
Q ss_pred hHHHHHHHHHhh
Q 043191 238 TYSTIIDGLCKE 249 (414)
Q Consensus 238 ~~~~li~~~~~~ 249 (414)
++..+++.+.+.
T Consensus 140 t~~~ll~iFG~~ 151 (228)
T PF06239_consen 140 TEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHhccc
Confidence 999999999553
No 152
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.80 E-value=0.00061 Score=58.75 Aligned_cols=145 Identities=13% Similarity=0.087 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043191 91 TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC-FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169 (414)
Q Consensus 91 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 169 (414)
.+|-.+|+..-+.+..+.|..+|.+..+.+. .+..+|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4688899999999999999999999986532 234445444443 33356777799999999887 56688899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHH
Q 043191 170 LCAESRIMEAAALFTKLRVFGCELD---VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246 (414)
Q Consensus 170 ~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~ 246 (414)
+.+.|+.+.|..+|++.... +.++ ...|...+..=.+.|+++.+.++.+.+.+ ..|+......+++-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--------~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--------LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--------HTTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HhhhhhHHHHHHHHh
Confidence 99999999999999999865 3222 24899999999999999999999999988 556655555555554
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.79 E-value=0.0015 Score=51.99 Aligned_cols=88 Identities=7% Similarity=-0.016 Sum_probs=67.0
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD--RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (414)
.....+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++..+.. +-+...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 3455678888888899999999999999876532222 3577888888999999999999999988764 335666777
Q ss_pred HHHHHHhcCCH
Q 043191 166 LIKDLCAESRI 176 (414)
Q Consensus 166 li~~~~~~g~~ 176 (414)
+...+...|+.
T Consensus 112 lg~~~~~~g~~ 122 (172)
T PRK02603 112 IAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHcCCh
Confidence 77777777763
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.0013 Score=48.44 Aligned_cols=100 Identities=14% Similarity=-0.001 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHH
Q 043191 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCF--TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG--CELDVFTYNTL 201 (414)
Q Consensus 126 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~l 201 (414)
.++..+...+.+.|++++|.+.|+.+.+... ......+..+..++.+.|++++|.+.|+.+.... ......++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566778888999999999999999987631 1124567778899999999999999999988752 11225667888
Q ss_pred HHHHHhcCChHHHHHHHHHHHcCC
Q 043191 202 INGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 202 i~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
..++.+.|+.++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999999999854
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.75 E-value=0.0011 Score=59.38 Aligned_cols=93 Identities=9% Similarity=-0.035 Sum_probs=72.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 175 (414)
....+...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 3455667888899999988887663 2256677778888888889999998888888775 4466778888888888899
Q ss_pred HHHHHHHHHHHHHcC
Q 043191 176 IMEAAALFTKLRVFG 190 (414)
Q Consensus 176 ~~~a~~~~~~m~~~g 190 (414)
+++|...|++.....
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999998888887763
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00062 Score=47.54 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043191 92 SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171 (414)
Q Consensus 92 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 171 (414)
++..+...+...|++++|..++++..+.. +.+...+..+..++...++++.|.+.++...+.. +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567777788889999999988877652 2234667777888888888999999988887764 345567778888888
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 043191 172 AESRIMEAAALFTKLRVF 189 (414)
Q Consensus 172 ~~g~~~~a~~~~~~m~~~ 189 (414)
..|+++.|...+.+....
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 889999998888877643
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.0029 Score=53.01 Aligned_cols=106 Identities=10% Similarity=0.035 Sum_probs=89.2
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 043191 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIV 213 (414)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 213 (414)
-+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++=.+...... +.-..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3667889999999999999885 5578888888999999999999999888877653 3346789999999999999999
Q ss_pred HHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhh
Q 043191 214 ALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249 (414)
Q Consensus 214 a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~ 249 (414)
|++.|++..+ +.|+..+|-.=+......
T Consensus 168 A~~aykKaLe--------ldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 168 AIEAYKKALE--------LDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHHhhhc--------cCCCcHHHHHHHHHHHHH
Confidence 9999999988 889998887776665443
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.72 E-value=6.8e-05 Score=51.55 Aligned_cols=81 Identities=16% Similarity=0.343 Sum_probs=42.7
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 147 (414)
|+++.|+.+|+.+....+..++...+..+..++.+.|++++|+.++++ .+.+. .+......+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 566666666666666554111333444466666666666666666665 21111 1223333445566666666666666
Q ss_pred HHH
Q 043191 148 LGR 150 (414)
Q Consensus 148 ~~~ 150 (414)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 159
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.67 E-value=9.2e-05 Score=48.48 Aligned_cols=64 Identities=25% Similarity=0.343 Sum_probs=48.6
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 132 (414)
+..|++++|+++|+.+....| .+...+..+..++.+.|++++|.++++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 346788889999998888876 57777888888888899999999988888766 56655554443
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.67 E-value=0.0015 Score=51.76 Aligned_cols=115 Identities=9% Similarity=-0.040 Sum_probs=73.0
Q ss_pred HHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCcchHHHH
Q 043191 70 PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP--DRYTYNILINCFCKMGRVSHGFVV 147 (414)
Q Consensus 70 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a~~~ 147 (414)
+..+...+..+.+..........|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344555555554333212335566777777888888999888888876543222 234677788888888888888888
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHH-------hcCCHHHHHHHHHH
Q 043191 148 LGRILRSCFTPDAVTFTSLIKDLC-------AESRIMEAAALFTK 185 (414)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~~~a~~~~~~ 185 (414)
++...... +....++..+...+. ..|++++|+..+++
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 88887653 333455566665665 66666655554443
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.65 E-value=0.0013 Score=56.71 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 197 TYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 197 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
+|..+|+..-+.+..+.|..+|.+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~ 30 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD 30 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC
Confidence 4555666666666666666666666543
No 162
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.64 E-value=0.012 Score=51.47 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=65.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHH
Q 043191 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364 (414)
Q Consensus 285 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~ 364 (414)
+.+.-|.-+...|+...|.++-.+.. + |+..-|...+.+++..++|++-.. +- .+ +-++.-|..
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~------fa---~s---kKsPIGyep 242 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEK------FA---KS---KKSPIGYEP 242 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHH------HH---hC---CCCCCChHH
Confidence 34445666666777777777765553 2 577777777777777777766444 22 11 124567777
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 365 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
++.+|.+.|...+|..+..++. +..-+..|.++|++.+|
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A 281 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEA 281 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHH
Confidence 7777777777777777766621 24456666777776665
No 163
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.60 E-value=0.0092 Score=58.03 Aligned_cols=147 Identities=15% Similarity=0.115 Sum_probs=86.3
Q ss_pred HHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHH--
Q 043191 70 PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV-- 147 (414)
Q Consensus 70 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~-- 147 (414)
...|+..|-+..+..+ .=...|..|...|....+...|.+.|++..+.. .-+......+...|++..+++.|..+
T Consensus 474 ~~~al~ali~alrld~--~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV--SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 5566666655554443 233456666666666666666666666655432 11344455555555555555555544
Q ss_pred ----------------------------------HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043191 148 ----------------------------------LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193 (414)
Q Consensus 148 ----------------------------------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 193 (414)
|+...+.. +-|...|..+..+|.++|.+..|.++|.+.... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 33333332 346677888999999999999999999887654 34
Q ss_pred CHHHHHH--HHHHHHhcCChHHHHHHHHHHHc
Q 043191 194 DVFTYNT--LINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 194 ~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+. +|.. ..-.-+..|.+.+|+..+.....
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 32 2221 12223566777777776666543
No 164
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.029 Score=45.98 Aligned_cols=186 Identities=17% Similarity=0.144 Sum_probs=133.9
Q ss_pred cCChhHHHHHHHHHHhC---C-CCCCHh-hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 043191 103 TKHYDTVLSLFKRLNLT---G-LFPDRY-TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177 (414)
Q Consensus 103 ~~~~~~a~~~~~~m~~~---g-~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 177 (414)
..+.++.++++..+... | ..++.. .|..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 34566777777766532 3 455554 35667777788899999999999988763 333333333333456689999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhH
Q 043191 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257 (414)
Q Consensus 178 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~ 257 (414)
+|+++++.+.+.. +.|.++|---+-..-..|+--+|++-+.+..+. +..|...|..+-.-|...
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-------F~~D~EAW~eLaeiY~~~-------- 167 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-------FMNDQEAWHELAEIYLSE-------- 167 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHhH--------
Confidence 9999999999876 667788877777777788888999988888875 678899999999988774
Q ss_pred HHHHhhccchhhHhhhhh-hhhhcc-ccccHHHHHHHHHhcC---ChhHHHHHHHhchhC
Q 043191 258 FSCMASFSALNKMAFYFP-LVRVQC-LCLNFLCLIDGLCKIS---KLKIARELFQSLPRA 312 (414)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~ 312 (414)
+++++|...++ +.-..| +...+..+.+.+-..| +.+.+.++|.+..+.
T Consensus 168 -------~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 168 -------GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred -------hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 78888888888 555544 4445555666554444 566788888887775
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.58 E-value=0.0062 Score=48.41 Aligned_cols=99 Identities=8% Similarity=0.013 Sum_probs=76.3
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043191 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD--AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201 (414)
Q Consensus 124 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 201 (414)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..... +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345677788889999999999999999987643322 4678888999999999999999999988763 3356677777
Q ss_pred HHHHHhcCC--------------hHHHHHHHHHHHc
Q 043191 202 INGLCRTGH--------------TIVALNLFEEMAN 223 (414)
Q Consensus 202 i~~~~~~g~--------------~~~a~~~~~~m~~ 223 (414)
..++...|+ +++|.+++++...
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 778877776 4566666666655
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.58 E-value=0.00018 Score=49.38 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=35.4
Q ss_pred CCcchHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043191 139 GRVSHGFVVLGRILRSCFT-PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217 (414)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 217 (414)
|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++ ...+ ..+....-.+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4455555555555554211 1223333345555555555555555555 2111 11122222334555555555555555
Q ss_pred HHH
Q 043191 218 FEE 220 (414)
Q Consensus 218 ~~~ 220 (414)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 167
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.57 E-value=0.059 Score=49.13 Aligned_cols=51 Identities=14% Similarity=0.295 Sum_probs=42.1
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT 119 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 119 (414)
....+++.+.++.+...-| -+...|..-|..-...++++.+..+|.+....
T Consensus 32 t~~~~~~R~~YEq~~~~FP--~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 32 TQPIDKVRETYEQLVNVFP--SSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred cCCHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3488899999999887665 66778888899999999999999999987654
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.57 E-value=0.0027 Score=56.93 Aligned_cols=90 Identities=7% Similarity=-0.058 Sum_probs=79.3
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcc
Q 043191 63 GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 142 (414)
.++..|++++|++.|+......+ .+...|..+..++.+.|++++|+..+++..... +.+...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P--~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDP--NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 45678999999999999999887 678889999999999999999999999998763 236778888999999999999
Q ss_pred hHHHHHHHHHHcC
Q 043191 143 HGFVVLGRILRSC 155 (414)
Q Consensus 143 ~a~~~~~~~~~~~ 155 (414)
+|...|++.++.+
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998864
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.0073 Score=56.72 Aligned_cols=142 Identities=12% Similarity=0.055 Sum_probs=101.5
Q ss_pred CCCHhhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCC--------cchHHHHHHHHH
Q 043191 87 RPPVTSFNILFGCLAKTK-----HYDTVLSLFKRLNLTGLFPD-RYTYNILINCFCKMGR--------VSHGFVVLGRIL 152 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~--------~~~a~~~~~~~~ 152 (414)
..+..+|...+++..... +...|.++|++..+. .|+ ...|..+..++..... ...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 577889999998865433 367899999999876 565 4455554444433221 223333333333
Q ss_pred Hc-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcc
Q 043191 153 RS-CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231 (414)
Q Consensus 153 ~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 231 (414)
.. ....+...|.++.-.+...|++++|...+++..... |+...|..+...+...|+.++|.+.+++...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~-------- 481 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN-------- 481 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------
Confidence 32 234456778887777777899999999999999874 7889999999999999999999999999887
Q ss_pred ccCchhhHH
Q 043191 232 CEPDAITYS 240 (414)
Q Consensus 232 ~~p~~~~~~ 240 (414)
+.|...+|.
T Consensus 482 L~P~~pt~~ 490 (517)
T PRK10153 482 LRPGENTLY 490 (517)
T ss_pred cCCCCchHH
Confidence 456555543
No 170
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.53 E-value=0.024 Score=51.53 Aligned_cols=142 Identities=13% Similarity=0.126 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccC-chhhHHHHHHHHHhhcCCCc
Q 043191 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP-DAITYSTIIDGLCKEAGSAN 254 (414)
Q Consensus 176 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~ 254 (414)
.+....+++++...-..--..+|..+|+.-.+..-+..|..+|.+..+.+ ..+ ++..+++++.-+|.
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~------r~~hhVfVa~A~mEy~cs------ 414 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK------RTRHHVFVAAALMEYYCS------ 414 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc------CCcchhhHHHHHHHHHhc------
Confidence 55566666666554322234567777777777777888888888888776 444 66677777777766
Q ss_pred hhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCC--HhhHHHHHHHHHh
Q 043191 255 FLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN--VVTYNILIRGLCN 330 (414)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~ 330 (414)
++...|..+|+ -... ..++.--...++.+...++-..+..+|++....++.|+ ...|..+|.-=..
T Consensus 415 ----------kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 415 ----------KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred ----------CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 34445555555 2222 22223333445555555555555555555555533333 2455555555555
Q ss_pred cCChhhhhh
Q 043191 331 DGQMDETKH 339 (414)
Q Consensus 331 ~g~~~~a~~ 339 (414)
-|++..+.+
T Consensus 485 vGdL~si~~ 493 (656)
T KOG1914|consen 485 VGDLNSILK 493 (656)
T ss_pred cccHHHHHH
Confidence 555555544
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.53 E-value=0.023 Score=49.28 Aligned_cols=106 Identities=12% Similarity=0.141 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCC-----CCHh-hHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC--CCCC
Q 043191 286 FLCLIDGLCKISKLKIARELFQSLPRAGLM-----PNVV-TYNILIRGLCNDGQMDETKHYETVFLLFKRLNST--GLFP 357 (414)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~--~~~p 357 (414)
+.-+...+.+.|++++|.++|+++...... .+.. .|-..+-++...|+...|.. .+++.... ++..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~------~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK------ALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH------HHHHHGTTSTTSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH------HHHHHHhhCCCCCC
Confidence 344677888999999999999988654322 2222 23334446677899988888 89988764 3333
Q ss_pred C--HHHHHHHHHHHHh--cCCHHHHHHHHHhhhhCCCCCCHHHHHHHH
Q 043191 358 D--LYTYNILINCFCK--IGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401 (414)
Q Consensus 358 ~--~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 401 (414)
+ ......||.+|-. ...++.++.-|+.+.+ .|..--..|+
T Consensus 232 s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~----ld~w~~~~l~ 275 (282)
T PF14938_consen 232 SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR----LDNWKTKMLL 275 (282)
T ss_dssp SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc----cHHHHHHHHH
Confidence 3 3466777877753 3456677777777754 3444444443
No 172
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.47 E-value=0.02 Score=55.78 Aligned_cols=179 Identities=10% Similarity=-0.052 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 043191 106 YDTVLSLFKRLNLTGLFPD-RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT 184 (414)
Q Consensus 106 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 184 (414)
...|...|-+..+. .++ ...|..|...|....+...|.+.|....+.+ ..+......+.+.|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 66677766655543 232 4578899999998889999999999998876 4577888999999999999999999844
Q ss_pred HHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHh
Q 043191 185 KLRVFGCELDV--FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA 262 (414)
Q Consensus 185 ~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~ 262 (414)
..-+.. +.-. ..|....-.|...++...|..-|+...... +-|...|..+..+|...
T Consensus 551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-------PkD~n~W~gLGeAY~~s------------- 609 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-------PKDYNLWLGLGEAYPES------------- 609 (1238)
T ss_pred HHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-------chhHHHHHHHHHHHHhc-------------
Confidence 433221 1111 222334445667778888888888777643 44667788888888775
Q ss_pred hccchhhHhhhhh-hhhhccccccHHH-HHHHHHhcCChhHHHHHHHhch
Q 043191 263 SFSALNKMAFYFP-LVRVQCLCLNFLC-LIDGLCKISKLKIARELFQSLP 310 (414)
Q Consensus 263 ~~~~~~~a~~~~~-~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~ 310 (414)
|+...|.++|. .....|+...-.. ..-.-+..|.+.+|...+..+.
T Consensus 610 --Gry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 610 --GRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred --CceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45555666665 3333333222111 1223345577777777776654
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.45 E-value=0.00077 Score=44.03 Aligned_cols=52 Identities=17% Similarity=0.038 Sum_probs=31.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 171 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.+.|++++|+++|+++.... +-+...+..+..+|.+.|++++|..+++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566666666666665553 23555555666666666666666666666665
No 174
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.37 E-value=0.002 Score=53.29 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 043191 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175 (414)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 175 (414)
-++.++++|...|+.||..+-..|++++++.+.
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 456666777777777777776677776666554
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.32 E-value=0.0071 Score=47.86 Aligned_cols=115 Identities=11% Similarity=0.044 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHH-hCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhcCCHHHHHHH
Q 043191 106 YDTVLSLFKRLN-LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP--DAVTFTSLIKDLCAESRIMEAAAL 182 (414)
Q Consensus 106 ~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~ 182 (414)
+..+...+..+. ..+..-....|..+...+...|++++|...|+........+ ...++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555553 33222235567778888889999999999999998763222 235788899999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHH-------hcCChHHHHHHHHHH
Q 043191 183 FTKLRVFGCELDVFTYNTLINGLC-------RTGHTIVALNLFEEM 221 (414)
Q Consensus 183 ~~~m~~~g~~~~~~~~~~li~~~~-------~~g~~~~a~~~~~~m 221 (414)
+++..... +....++..+...+. +.|+++.|...+++.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99988753 334556666666666 778877665555443
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.31 E-value=0.017 Score=42.30 Aligned_cols=105 Identities=20% Similarity=0.182 Sum_probs=66.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC----HHhHHHHHHH
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLTGLFPD--RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD----AVTFTSLIKD 169 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~ 169 (414)
+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+++...... |+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44556677888888888888777765543 3345566677777888888888888776652 22 2222233346
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043191 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206 (414)
Q Consensus 170 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 206 (414)
+...|+.++|++.+-.... ++...|.--|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6677888888877766553 23335555555544
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.30 E-value=0.0024 Score=48.60 Aligned_cols=99 Identities=12% Similarity=0.038 Sum_probs=76.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043191 89 PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168 (414)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 168 (414)
+....-.+...+...|++++|.++|+.+..... -+..-|..|.-++-..|++.+|+..|....... +-|...+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 344455566667788899999999888776532 255556678888888889999999998888876 457778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 043191 169 DLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~ 189 (414)
++...|+.+.|.+.|+.....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888899999999888877764
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.25 E-value=0.0082 Score=45.77 Aligned_cols=99 Identities=6% Similarity=-0.158 Sum_probs=83.4
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043191 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204 (414)
Q Consensus 125 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 204 (414)
....-.+...+...|++++|.++|+.+.... +-+..-|-.|.-++-..|++++|+..|....... +-|...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3444456666788999999999999998876 4467778888888999999999999999998876 4577888889999
Q ss_pred HHhcCChHHHHHHHHHHHcCC
Q 043191 205 LCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 205 ~~~~g~~~~a~~~~~~m~~~~ 225 (414)
+...|+.+.|.+.|+......
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999887643
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.24 E-value=0.048 Score=45.91 Aligned_cols=154 Identities=10% Similarity=0.042 Sum_probs=102.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhH---HHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHh--c
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSF---NILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYTYNILINCFCK--M 138 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~--~ 138 (414)
+..|++++|.+.|+.+....| .. ...- -.++.++.+.+++++|...+++..+.. -.|+. -|...+.+.+. .
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP-~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYP-FG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMAL 119 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhhc
Confidence 356899999999999999877 33 2322 356678889999999999999988662 22322 23333333221 1
Q ss_pred ---------------CC---cchHHHHHHHHHHcCCCCCHHh------H------------HHHHHHHHhcCCHHHHHHH
Q 043191 139 ---------------GR---VSHGFVVLGRILRSCFTPDAVT------F------------TSLIKDLCAESRIMEAAAL 182 (414)
Q Consensus 139 ---------------~~---~~~a~~~~~~~~~~~~~~~~~~------~------------~~li~~~~~~g~~~~a~~~ 182 (414)
.+ ...|++.|+.+++. -|++.- . -.+.+.|.+.|.+..|..-
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r 197 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNR 197 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 12 23466777777765 233221 1 1234458888999999999
Q ss_pred HHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 183 FTKLRVF--GCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 183 ~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
|+.+.+. +.+........++.+|...|..++|..+...+..
T Consensus 198 ~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 198 VEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 9988874 2233455677888999999999999888776643
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.24 E-value=0.0019 Score=41.69 Aligned_cols=56 Identities=20% Similarity=0.111 Sum_probs=35.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 167 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
...+.+.|++++|.+.|+++.+.. +-+...+..+..++.+.|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666677777777777766654 23455666666666777777777777776655
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.0047 Score=51.76 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=79.8
Q ss_pred HHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 043191 293 LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD-LYTYNILINCFCK 371 (414)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 371 (414)
+.+.+++.+|+..|.+.++.... |.+-|..=..+|.+.|.++.|.+ -.+..+.. .|. ..+|..|-.+|..
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVk------Dce~Al~i--Dp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVK------DCESALSI--DPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHH------HHHHHHhc--ChHHHHHHHHHHHHHHc
Confidence 45668999999999998886443 67777888889999999888866 55555543 333 4688889999999
Q ss_pred cCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHH
Q 043191 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406 (414)
Q Consensus 372 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 406 (414)
.|++++|++.|++.++ +.|+-.+|..=+....+
T Consensus 162 ~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALE--LDPDNESYKSNLKIAEQ 194 (304)
T ss_pred cCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHHHH
Confidence 9999999999999888 68888888776655443
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.15 E-value=0.029 Score=41.11 Aligned_cols=106 Identities=20% Similarity=0.098 Sum_probs=78.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 043191 131 LINCFCKMGRVSHGFVVLGRILRSCFTPD--AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD----VFTYNTLING 204 (414)
Q Consensus 131 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~ 204 (414)
+..++-..|+.++|+.+|++....|+... ...+-.+...+...|++++|..+|++.... .|+ ......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 45667788999999999999999887654 345566777899999999999999998875 243 2233334457
Q ss_pred HHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHh
Q 043191 205 LCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248 (414)
Q Consensus 205 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~ 248 (414)
+...|+.++|+..+-.... ++...|..-|..|..
T Consensus 85 L~~~gr~~eAl~~~l~~la----------~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----------ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Confidence 7889999999999876643 334467766666643
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.13 E-value=0.0033 Score=41.13 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=37.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHc
Q 043191 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG-HTIVALNLFEEMAN 223 (414)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 223 (414)
..+|..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.| ++++|++.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455556666666666666666666665553 234555666666666666 46666666665544
No 184
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.13 E-value=0.017 Score=44.49 Aligned_cols=70 Identities=23% Similarity=0.290 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 043191 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV-----FGCELDVFTY 198 (414)
Q Consensus 128 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~ 198 (414)
...++..+...|+++.|..+...+.... +.+...|..+|.+|...|+..+|.++|+++.. .|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445556667788888888888888775 55777888888888888888888888877643 4777776553
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.04 Score=46.56 Aligned_cols=116 Identities=11% Similarity=0.042 Sum_probs=61.1
Q ss_pred HHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CCcchHHH
Q 043191 70 PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM---GRVSHGFV 146 (414)
Q Consensus 70 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---~~~~~a~~ 146 (414)
++....-++.-...+| .|...|-.|..+|...|+++.|..-|.+..+.- .+|...+..+..++... ....++..
T Consensus 138 ~~~l~a~Le~~L~~nP--~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 138 MEALIARLETHLQQNP--GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 4445555555555554 556666666666666666666666666654431 12333433333333222 12345556
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043191 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
+|+++++.+ +-|+.....|...+...|++.+|...|+.|.+.
T Consensus 215 ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 215 LLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 666665553 334555555555566666666666666666554
No 186
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.10 E-value=0.012 Score=43.49 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=71.2
Q ss_pred CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHH---------------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043191 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN---------------STGLFPDLYTYNILINCFCKIGRVSSGFVI 381 (414)
Q Consensus 317 ~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~---------------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 381 (414)
|..++..+|.++++.|+.+.... +++..= .....|+..+..+++.+|+..|++..|+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~------~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~ 74 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKS------YIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKL 74 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHH------HHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence 45678888999999999887766 554431 123568999999999999999999999999
Q ss_pred HHhhhhC-CCCCCHHHHHHHHHHHHHcCCc
Q 043191 382 FGRILPS-CFTPDAVTFTSLIKILEINSFF 410 (414)
Q Consensus 382 ~~~m~~~-g~~p~~~~~~~li~~~~~~g~~ 410 (414)
++...+. ++..+..+|..|++-+...-+.
T Consensus 75 vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 75 VDFFSRKYPIPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 9998876 8888899999999877765543
No 187
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.09 E-value=0.055 Score=46.90 Aligned_cols=110 Identities=13% Similarity=0.109 Sum_probs=66.1
Q ss_pred HHHHhc-CChhHHHHHHHhchh----CCC-CCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCC-----CCH
Q 043191 291 DGLCKI-SKLKIARELFQSLPR----AGL-MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF-----PDL 359 (414)
Q Consensus 291 ~~~~~~-~~~~~a~~~~~~m~~----~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~-----p~~ 359 (414)
..|-.. |++++|.+.|++..+ .|. .--..++..+...+.+.|++++|.. +|++....... .+.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~------~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE------IYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH------HHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH------HHHHHHHHhhcccccchhH
Confidence 344444 667777777766532 121 0113456677788999999999888 99988764332 222
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHhhhhC--CCCCC--HHHHHHHHHHHHH
Q 043191 360 Y-TYNILINCFCKIGRVSSGFVIFGRILPS--CFTPD--AVTFTSLIKILEI 406 (414)
Q Consensus 360 ~-~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~~~~~~li~~~~~ 406 (414)
. .|-..+-++...||...|.+.+++.... ++..+ ......||.+|-.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 2 2333344667789999999999998765 33333 4556667776643
No 188
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.01 E-value=0.011 Score=43.75 Aligned_cols=54 Identities=7% Similarity=0.004 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHh
Q 043191 190 GCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248 (414)
Q Consensus 190 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~ 248 (414)
.+.|+..+..+++.+|+..|++..|+++++...+..+ +..+..+|..|++-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~-----I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP-----IPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888887664 56667788877775544
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.01 E-value=0.0038 Score=40.23 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043191 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188 (414)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (414)
.+.+.|++++|.+.|+.+++.. +-+...+..+..++.+.|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444554444444443 22344444444444444555555544444443
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.00 E-value=0.016 Score=49.18 Aligned_cols=62 Identities=11% Similarity=-0.068 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 163 FTSLIKDLCAESRIMEAAALFTKLRVFG--CELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 163 ~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
+-.+...|...|++++|...|+.+...- -+.....+-.+...+...|+.++|..+|+.+.+.
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344444444444444444444444321 0011222222333444444444554444444443
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.042 Score=45.34 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=108.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHH---
Q 043191 91 TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI--- 167 (414)
Q Consensus 91 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--- 167 (414)
...+.++..+.-.|.+.-...++++..+..-+.+......|.+.-.+.|+.+.|...|++..+..-+.|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34567777777888999999999999887655577778889999999999999999999887654344544444443
Q ss_pred --HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHH
Q 043191 168 --KDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245 (414)
Q Consensus 168 --~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~ 245 (414)
..|.-.+++..|...+++..... ..|....|.-.-+..-.|+..+|++.++.|.+ ..|...+-.+++-.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--------~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--------QDPRHYLHESVLFN 328 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--------cCCccchhhhHHHH
Confidence 34566788888888898887765 34555555544455557899999999999998 45666666655544
Q ss_pred H
Q 043191 246 L 246 (414)
Q Consensus 246 ~ 246 (414)
+
T Consensus 329 L 329 (366)
T KOG2796|consen 329 L 329 (366)
T ss_pred H
Confidence 3
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.95 E-value=0.023 Score=53.49 Aligned_cols=127 Identities=11% Similarity=-0.015 Sum_probs=90.6
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC--------hhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHh
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKH--------YDTVLSLFKRLNLT-GLFPDRYTYNILINCFCK 137 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--------~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~ 137 (414)
.+..+.|.++|++..+..| .....|..+..++..... ...+.+...+.... ....+...|..+.-.+..
T Consensus 355 ~~~~~~A~~lle~Ai~ldP--~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~ 432 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEP--DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV 432 (517)
T ss_pred HHHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh
Confidence 3457899999999999886 556666665554433221 22333334333322 123355778777666777
Q ss_pred cCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043191 138 MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199 (414)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 199 (414)
.|++++|...+++....+ |+...|..+...+...|+.++|.+.+++.... .|...+|.
T Consensus 433 ~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~ 490 (517)
T PRK10153 433 KGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLY 490 (517)
T ss_pred cCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHH
Confidence 899999999999999875 68889999999999999999999999998766 45544443
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.86 E-value=0.0068 Score=39.58 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=30.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-CcchHHHHHHHHHH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG-RVSHGFVVLGRILR 153 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~ 153 (414)
..+|..+...+.+.|++++|+..|++..+.. +-+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555544432 113344444555555555 45555555554443
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.12 Score=43.83 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=92.1
Q ss_pred CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHH
Q 043191 122 FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE---SRIMEAAALFTKLRVFGCELDVFTY 198 (414)
Q Consensus 122 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~~~~~~~ 198 (414)
+-|...|-.|...|...|+++.|...|....+.. .++...+..+..++... ....++..+|+++.... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 3478899999999999999999999999998874 55777777777665443 24568899999998875 4567778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHH
Q 043191 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246 (414)
Q Consensus 199 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~ 246 (414)
..|...+...|++.+|...|+.|.+. .|....+..+|..-
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--------lp~~~~rr~~ie~~ 270 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--------LPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--------CCCCCchHHHHHHH
Confidence 88889999999999999999999984 45556666666553
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.81 E-value=0.03 Score=47.61 Aligned_cols=103 Identities=11% Similarity=0.096 Sum_probs=80.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCcchHHHHHHHHHHcC--CCCCHHhH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR----YTYNILINCFCKMGRVSHGFVVLGRILRSC--FTPDAVTF 163 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~ 163 (414)
...|...+..+.+.|++++|...|+.+.+. .|+. ..+..+..+|...|++++|...|+.+.+.- -+.....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345666666667789999999999999877 4553 577788999999999999999999998762 12224445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043191 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196 (414)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 196 (414)
-.+...+...|+.++|.++|+++.+. .|+..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 55667788999999999999999876 45543
No 196
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.78 E-value=0.26 Score=41.50 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=30.4
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCCCHHhH---HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043191 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTF---TSLIKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
..+.+.|+++.|.+.|+.+...- +-+.... -.+..++-+.+++++|...+++..+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33445666666666666666542 1112221 23445556666666666666666654
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.76 E-value=0.012 Score=38.81 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=33.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 168 KDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
..|.+.+++++|.++++++...+ +.+...|.....++.+.|++++|.+.|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34556666666666666666553 33455555566666666666666666666665
No 198
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.65 E-value=0.14 Score=48.31 Aligned_cols=245 Identities=11% Similarity=0.003 Sum_probs=140.6
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHH----------Hh
Q 043191 69 TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDRYTYNILINCF----------CK 137 (414)
Q Consensus 69 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~----------~~ 137 (414)
..++|.+..+. .|.+..|..+.......-.++-|...|-+...- |++ ..-.|-..+ +-
T Consensus 678 gledA~qfiEd-------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik----~vkrl~~i~s~~~q~aei~~~ 746 (1189)
T KOG2041|consen 678 GLEDAIQFIED-------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIK----LVKRLRTIHSKEQQRAEISAF 746 (1189)
T ss_pred chHHHHHHHhc-------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchh----HHHHhhhhhhHHHHhHhHhhh
Confidence 34667766543 477889999998888888888888877665432 332 111111111 12
Q ss_pred cCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHH
Q 043191 138 MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC--ELDVFTYNTLINGLCRTGHTIVAL 215 (414)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~ 215 (414)
-|++++|.++|-+|-+++ ..|..+.+.|+|-.+.++++.-. .+. +.-...|+.+...++....|++|.
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888776554 34667778888877766654311 110 111357888888888888888888
Q ss_pred HHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHh
Q 043191 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK 295 (414)
Q Consensus 216 ~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~ 295 (414)
+.+..-.... ..+.++.+. ..+++...... ..+.+....-.+.+++..
T Consensus 817 ~yY~~~~~~e---------------~~~ecly~l---------------e~f~~LE~la~--~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 817 KYYSYCGDTE---------------NQIECLYRL---------------ELFGELEVLAR--TLPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHhccchH---------------hHHHHHHHH---------------HhhhhHHHHHH--hcCcccchHHHHHHHHHh
Confidence 8877654321 123333221 11221111111 113345556667788888
Q ss_pred cCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCC
Q 043191 296 ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI-LINCFCKIGR 374 (414)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~ 374 (414)
.|.-++|.+.|-+-.. | ...+.+|...+++.+|.+ +-+... .|.+.+.-. -..-+...++
T Consensus 865 vGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~ave------laq~~~----l~qv~tliak~aaqll~~~~ 925 (1189)
T KOG2041|consen 865 VGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVE------LAQRFQ----LPQVQTLIAKQAAQLLADAN 925 (1189)
T ss_pred hchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHH------HHHhcc----chhHHHHHHHHHHHHHhhcc
Confidence 8888888877644321 1 234566777788877766 544432 233333211 1222445677
Q ss_pred HHHHHHHHHhh
Q 043191 375 VSSGFVIFGRI 385 (414)
Q Consensus 375 ~~~a~~~~~~m 385 (414)
.-+|++..+..
T Consensus 926 ~~eaIe~~Rka 936 (1189)
T KOG2041|consen 926 HMEAIEKDRKA 936 (1189)
T ss_pred hHHHHHHhhhc
Confidence 77777665543
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.64 E-value=0.011 Score=45.40 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHH-----cCCCCCHHhHH
Q 043191 91 TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR-----SCFTPDAVTFT 164 (414)
Q Consensus 91 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 164 (414)
.+...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+...|.++|+.+.+ .|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 355677777888999999999999988763 33788999999999999999999999988754 48888876643
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.1 Score=43.19 Aligned_cols=145 Identities=12% Similarity=0.045 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHH
Q 043191 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241 (414)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~ 241 (414)
+.+.+++.+.-.|.+.-....+.++++..-+.+......|++.-.+.||.+.|...|++.++.. -..|..+++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~------~kL~~~q~~~ 252 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT------QKLDGLQGKI 252 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH------hhhhccchhH
Confidence 3455666666678888888888888887666778888889999999999999999999888655 3444444444
Q ss_pred HHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhH
Q 043191 242 IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY 321 (414)
Q Consensus 242 li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 321 (414)
++..- ....|.-.+++-.|...|.++...... |+...
T Consensus 253 ~V~~n------------------------------------------~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~ 289 (366)
T KOG2796|consen 253 MVLMN------------------------------------------SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVAN 289 (366)
T ss_pred HHHhh------------------------------------------hhhheecccchHHHHHHHhhccccCCC-chhhh
Confidence 43221 112233345566666666666554332 34444
Q ss_pred HHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHH
Q 043191 322 NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363 (414)
Q Consensus 322 ~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~ 363 (414)
|.-.-+..-.|+..+|.+ .++.|... .|...+-+
T Consensus 290 NnKALcllYlg~l~DAiK------~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALK------QLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred chHHHHHHHHHHHHHHHH------HHHHHhcc--CCccchhh
Confidence 433334444566666666 67776654 34444443
No 201
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.58 E-value=0.5 Score=42.10 Aligned_cols=172 Identities=9% Similarity=-0.075 Sum_probs=102.2
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHHcC---CCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043191 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSC---FTPDAVTFTSLIKDLCA---ESRIMEAAALFTKLRVFGCELDVFTY 198 (414)
Q Consensus 125 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~ 198 (414)
..+...++-+|....+++..+++++.+.... +.-+..+--...-++.+ .|+.++|++++..+....-.++..+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3444455666888888888888888887651 22223333344455666 78888899888886555557788888
Q ss_pred HHHHHHHHh---------cCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhh
Q 043191 199 NTLINGLCR---------TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269 (414)
Q Consensus 199 ~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
..+.+.|-+ ....++|...|.+--+ +.|+..+-..+...+...|...... ....+
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--------~~~~~Y~GIN~AtLL~~~g~~~~~~--------~el~~ 284 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--------IEPDYYSGINAATLLMLAGHDFETS--------EELRK 284 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--------CCccccchHHHHHHHHHcCCcccch--------HHHHH
Confidence 887777643 1236778888887765 3444433222222222222211100 00001
Q ss_pred Hhhhhh-------hhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhC
Q 043191 270 MAFYFP-------LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312 (414)
Q Consensus 270 a~~~~~-------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 312 (414)
....+. ......+-+.+.+++.++.-.|+.++|.+..+.|...
T Consensus 285 i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 285 IGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 110000 1112445566778999999999999999999999876
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.51 E-value=0.02 Score=37.76 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=29.4
Q ss_pred HHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043191 134 CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
.|.+.++++.|.++++.+...+ +.+...+.....++.+.|++++|.+.|++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455555555555555555543 334444555555555555555555555555544
No 203
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.6 Score=41.46 Aligned_cols=286 Identities=13% Similarity=0.023 Sum_probs=156.2
Q ss_pred cCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhc
Q 043191 60 SGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKM 138 (414)
Q Consensus 60 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 138 (414)
..+...+..++..|+..+.......| .++.-|..-...+...+++++|.--.+.-.+. .| ....+.-.-+++...
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~p--d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCP--DNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLAL 130 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCc--cchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhh
Confidence 34555677888999999999998876 55666666666666677777766554433221 11 111222233333333
Q ss_pred CCcchHHHHHH---------------HHHHcCC-CCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043191 139 GRVSHGFVVLG---------------RILRSCF-TPDAVTFTSLI-KDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201 (414)
Q Consensus 139 ~~~~~a~~~~~---------------~~~~~~~-~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 201 (414)
++..+|.+.++ ....... +|.-.++..+= .++.-.|+.++|.++--...+.. . .-.+..+
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~--~n~~al~ 207 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-A--TNAEALY 207 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-c--chhHHHH
Confidence 33333333222 1111111 12223333222 34566788888888766665442 1 2223333
Q ss_pred HH--HHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHH---HHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhh
Q 043191 202 IN--GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST---IIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276 (414)
Q Consensus 202 i~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~---li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 276 (414)
++ ++.-.++.+.|..-|++.... .|+...-.. +.+.+-.
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~l--------dpdh~~sk~~~~~~k~le~---------------------------- 251 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRL--------DPDHQKSKSASMMPKKLEV---------------------------- 251 (486)
T ss_pred hcccccccccchHHHHHHHhhhhcc--------ChhhhhHHhHhhhHHHHHH----------------------------
Confidence 33 333467788888888888874 455433222 2222211
Q ss_pred hhhccccccHHHHHHHHHhcCChhHHHHHHHhchhC---CCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC
Q 043191 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA---GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353 (414)
Q Consensus 277 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~ 353 (414)
+.-=.+-..+.|++.+|.+.|.+.+.. ++.|+...|.....+..+.|+.++|+. --++..+.
T Consensus 252 ---------~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eais------dc~~Al~i 316 (486)
T KOG0550|consen 252 ---------KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAIS------DCNEALKI 316 (486)
T ss_pred ---------HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhh------hhhhhhhc
Confidence 111122345668888888888887653 355666677777777888888888766 55555443
Q ss_pred CCCCCHH-HHHHHH--HHHHhcCCHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHHc
Q 043191 354 GLFPDLY-TYNILI--NCFCKIGRVSSGFVIFGRILPSCFTP-DAVTFTSLIKILEIN 407 (414)
Q Consensus 354 ~~~p~~~-~~~~li--~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~ 407 (414)
|.. ....+. .++...++|++|++-++...+..-.+ ...++.....++-+.
T Consensus 317 ----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 317 ----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKS 370 (486)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 333 222222 34556778888888888777653222 234555444444433
No 204
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.43 Score=40.46 Aligned_cols=147 Identities=15% Similarity=0.026 Sum_probs=106.1
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcc
Q 043191 63 GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS 142 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 142 (414)
.++..|++.+|..+|+......+ .+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 56788999999999999998876 5566778899999999999999999998875422222222334566677777777
Q ss_pred hHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHH
Q 043191 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG-CELDVFTYNTLINGLCRTGHTIV 213 (414)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~ 213 (414)
+...+-.+.-.. +-|...--.+...+...|+.++|.+.+-.+.... -.-|...-..++..+.-.|.-+.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 777777766543 3477777788889999999999998877665532 13355566667776666664333
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.34 E-value=0.19 Score=45.51 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=29.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPV-TSFNILFGCLAKTKHYDTVLSLFKRLNL 118 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 118 (414)
+.|++++|+..|+...+.+|..+.. .+|..+..+|...|+.++|++.+++..+
T Consensus 87 ~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 87 SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456666666666665555411111 3455666666666666666666666554
No 206
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.34 E-value=0.037 Score=46.12 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=73.5
Q ss_pred CCCHhhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH
Q 043191 87 RPPVTSFNILFGCLAKT-----KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (414)
..|-.+|-+.+..+... +.++-....++.|.+.|+.-|..+|+.||..+-+-.-.. ..+|+...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~F--------- 132 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKVF--------- 132 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHHH---------
Confidence 46777788777777543 456666677888888888888888988888765432211 11111111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 043191 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211 (414)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 211 (414)
--|- .+-+-+++++++|...|+-||-.+-..|++++.+.+..
T Consensus 133 ------~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 ------LHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred ------hhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111 12335788999999999999999999999999988763
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.33 E-value=0.071 Score=46.95 Aligned_cols=122 Identities=11% Similarity=0.078 Sum_probs=73.9
Q ss_pred ccchhhHhhhhh-hhhh-------ccccccHHHHHHHHHhcCChhHHHHHHHhch----hCCC-CCCHhhHHHHHHHHHh
Q 043191 264 FSALNKMAFYFP-LVRV-------QCLCLNFLCLIDGLCKISKLKIARELFQSLP----RAGL-MPNVVTYNILIRGLCN 330 (414)
Q Consensus 264 ~~~~~~a~~~~~-~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~-~p~~~~~~~li~~~~~ 330 (414)
.|+++.+....+ -... ......+..+..++.-.|+++.|.+.|+.-. +.|- .....+.-+|-.+|.-
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl 287 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL 287 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence 355666655544 1111 2234456678888888899999999998653 2221 1123344556677777
Q ss_pred cCChhhhhhhh-hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 331 DGQMDETKHYE-TVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 331 ~g~~~~a~~~~-~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
..++++|+.|. .-+.+-+++... .-....+.+|..+|...|..++|+.+.+.-++
T Consensus 288 l~e~~kAI~Yh~rHLaIAqeL~Dr--iGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 288 LKEVQKAITYHQRHLAIAQELEDR--IGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 77777777631 111222222221 22456788899999999999999877765543
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.32 E-value=0.38 Score=37.78 Aligned_cols=132 Identities=12% Similarity=0.044 Sum_probs=95.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCC-CCCHHhHHH
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTS 165 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 165 (414)
-|++..--.|..++.+.|+..+|...|.+...--+.-|....-.+.++....+++..|...++.+.+... ..++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4777777889999999999999999999887543444677777788888889999999999999887531 113344556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043191 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220 (414)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 220 (414)
+.+.|.-.|....|..-|+..... -|+...-.-....+.+.|+.+++..-+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 778889999999999999998875 45544333333445667766655443333
No 209
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.28 E-value=0.72 Score=40.57 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhh
Q 043191 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPL 276 (414)
Q Consensus 197 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 276 (414)
+.+.-|.-+...|+...|.++-.+.. .|+..-|...+.+++.. +++++...+..
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----------v~dkrfw~lki~aLa~~---------------~~w~eL~~fa~- 232 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----------VPDKRFWWLKIKALAEN---------------KDWDELEKFAK- 232 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----------CcHHHHHHHHHHHHHhc---------------CCHHHHHHHHh-
Confidence 44445666677888888888766663 57777787777777765 33433333221
Q ss_pred hhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhh
Q 043191 277 VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339 (414)
Q Consensus 277 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 339 (414)
...++.-|..++.+|.+.|+..+|..+...+ .+..-+..|.+.|++.+|.+
T Consensus 233 --skKsPIGyepFv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 233 --SKKSPIGYEPFVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred --CCCCCCChHHHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHH
Confidence 1234566666777777777777776666551 12445556666777666644
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.27 E-value=0.011 Score=39.80 Aligned_cols=64 Identities=25% Similarity=0.412 Sum_probs=46.7
Q ss_pred HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 318 VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST----GL-FPD-LYTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 318 ~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
..+|+.+...|...|++++|+. .+++..+. |- .|+ ..++..+...|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~------~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALD------YYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHH------HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHH------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567788888889999888888 44444431 11 222 56788889999999999999999998764
No 211
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.25 E-value=0.3 Score=35.91 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=89.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhh---HHHHHHHH
Q 043191 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT---YSTIIDGL 246 (414)
Q Consensus 170 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~---~~~li~~~ 246 (414)
..-.|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-+-- |... .-.++.+|
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF---------Dis~C~NlKrVi~C~ 79 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF---------DISKCGNLKRVIECY 79 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS----------GGG-S-THHHHHHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc---------CchhhcchHHHHHHH
Confidence 45568888888888888764 356667777766666667677777777765432 2222 23445555
Q ss_pred HhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHH
Q 043191 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326 (414)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 326 (414)
...+. +.......++...+.|+-+.-.+++.++.+ +-.+++...-.+..
T Consensus 80 ~~~n~------------------------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~ 128 (161)
T PF09205_consen 80 AKRNK------------------------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIAN 128 (161)
T ss_dssp HHTT---------------------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHH
T ss_pred HHhcc------------------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHH
Confidence 54422 233355677888899999999999998875 34568888888999
Q ss_pred HHHhcCChhhhhhhhhHHHHHHHHHhCCCC
Q 043191 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLF 356 (414)
Q Consensus 327 ~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~ 356 (414)
+|.+.|+..++.+ ++.+.-+.|++
T Consensus 129 Ay~klg~~r~~~e------ll~~ACekG~k 152 (161)
T PF09205_consen 129 AYKKLGNTREANE------LLKEACEKGLK 152 (161)
T ss_dssp HHHHTT-HHHHHH------HHHHHHHTT-H
T ss_pred HHHHhcchhhHHH------HHHHHHHhchH
Confidence 9999999999999 99999888864
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.21 E-value=0.021 Score=38.36 Aligned_cols=62 Identities=23% Similarity=0.200 Sum_probs=36.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043191 161 VTFTSLIKDLCAESRIMEAAALFTKLRVF----GC-ELD-VFTYNTLINGLCRTGHTIVALNLFEEMA 222 (414)
Q Consensus 161 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 222 (414)
.+|+.+...|...|++++|++.|++..+. |- .|+ ..+++.+..+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666777777776666665432 10 111 3456666677777777777777766654
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.19 E-value=0.14 Score=46.34 Aligned_cols=66 Identities=15% Similarity=0.023 Sum_probs=58.4
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR----YTYNILINCFCKMGRVSHGFVVLGRILRS 154 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 154 (414)
..+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 367888999999999999999999999998876 5653 35888999999999999999999999885
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=1.3 Score=42.59 Aligned_cols=320 Identities=13% Similarity=0.015 Sum_probs=168.3
Q ss_pred hhhcCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh--hHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 043191 57 CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY--DTVLSLFKRLNLTGLFPDRYTYNILINC 134 (414)
Q Consensus 57 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~~li~~ 134 (414)
-...+..++..+.+..|+++-.++..... .....|......+.+..+. +++++..++=...... ....|..+.+-
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~--~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~ 516 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPES--QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARR 516 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccc--cccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHH
Confidence 33444556677889999999988854322 1145566666666655332 2233333322222122 34567777777
Q ss_pred HHhcCCcchHHHHHHHHHHcCC----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCCHHHHH
Q 043191 135 FCKMGRVSHGFVVLGRILRSCF----TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG-----------CELDVFTYN 199 (414)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----------~~~~~~~~~ 199 (414)
....|+.+.|..+++.=...+. -.+..-+...+.-+.+.|+.+....++-++...- .+.....|.
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~ 596 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYR 596 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHH
Confidence 7788999999887754222211 1123335566777788888888888777776531 011111222
Q ss_pred HHHHH--------HHhcCChHHHHHHH--HHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhh
Q 043191 200 TLING--------LCRTGHTIVALNLF--EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNK 269 (414)
Q Consensus 200 ~li~~--------~~~~g~~~~a~~~~--~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
-+++- +.+.++-.++..-| +....... ..+..|+. ...-.+|.+..... .... ..++..+
T Consensus 597 ~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~--~~~r~~~l---k~~a~~~a~sk~~s--~e~k---a~ed~~k 666 (829)
T KOG2280|consen 597 QFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAET--IEGRIPAL---KTAANAFAKSKEKS--FEAK---ALEDQMK 666 (829)
T ss_pred HHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhh--hcccchhH---HHHHHHHhhhhhhh--hHHH---HHHHHHH
Confidence 22210 00111111111111 11000000 00011221 11222222211100 0000 0111111
Q ss_pred Hhhhhh-hhhh---ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHH
Q 043191 270 MAFYFP-LVRV---QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFL 345 (414)
Q Consensus 270 a~~~~~-~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~ 345 (414)
...+.+ .... .-.--+.+--+.-+...|+..+|.++-.+.+- ||-..|-.-+.+++..+++++-++
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLek------ 736 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEK------ 736 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHH------
Confidence 122222 1111 12233345556677778999999998877653 688889999999999999887544
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCccccC
Q 043191 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQVA 414 (414)
Q Consensus 346 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 414 (414)
+ ..++ + ++.-|..++.+|.+.|+.++|.+++.+.-.. .-...+|.+.|++.+|+
T Consensus 737 f---Aksk--k-sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 737 F---AKSK--K-SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAA 790 (829)
T ss_pred H---Hhcc--C-CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHH
Confidence 2 2222 1 3677888899999999999999988765431 15677888888887763
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.11 E-value=0.3 Score=45.79 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=17.0
Q ss_pred HHHHHHHhcCChhHHHHHHHhchh
Q 043191 288 CLIDGLCKISKLKIARELFQSLPR 311 (414)
Q Consensus 288 ~li~~~~~~~~~~~a~~~~~~m~~ 311 (414)
.+++.....+++.+|..+-+...+
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcc
Confidence 355666677888888888776655
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.05 E-value=0.65 Score=37.98 Aligned_cols=21 Identities=29% Similarity=0.055 Sum_probs=8.6
Q ss_pred HHHHhcCChhHHHHHHHhchh
Q 043191 291 DGLCKISKLKIARELFQSLPR 311 (414)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~ 311 (414)
..|.+.|.+..|..-++.+.+
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 334444444444444444433
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.04 E-value=0.88 Score=43.29 Aligned_cols=48 Identities=19% Similarity=0.069 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhC-CCCCCHHHHHHHHHHHHHcC
Q 043191 361 TYNILINCFCKIGRVSSGFVIFGRILPS-CFTPDAVTFTSLIKILEINS 408 (414)
Q Consensus 361 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g 408 (414)
.|-+|.+--...|.++.|++.--.+.+. .+-|...+|..|.-+-+...
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~r 1071 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVR 1071 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhh
Confidence 3444444456678888877655444433 46677777777665554433
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.03 E-value=0.99 Score=39.89 Aligned_cols=293 Identities=13% Similarity=0.045 Sum_probs=165.2
Q ss_pred HHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--hcCCcchHH
Q 043191 70 PNEALCVFDYMLNMRPSRPPVTSFNILFGCLA--KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC--KMGRVSHGF 145 (414)
Q Consensus 70 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~~~~~~a~ 145 (414)
+..+.+.|..-+.... |..|-.++. -.|+-..|.++-.+-.+. +..|......|+.+-. -.|+++.|.
T Consensus 69 P~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 69 PYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred cHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 3556666666544333 555555544 346666776665543321 2345556666665543 468999999
Q ss_pred HHHHHHHHcCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 146 VVLGRILRSCFTPDAVT--FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+-|+.|... |.... ...|.-.--+.|+.+.|..+-++.-..- +.-...+.+.+...|..|+|+.|+++++.-..
T Consensus 141 ~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 141 KKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 999999863 33322 3344444566788998888888776542 22357888899999999999999999988776
Q ss_pred CCCCCCccccCchhh--HHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhcccc-ccHHHHHHHHHhcCCh
Q 043191 224 GNGEFGVVCEPDAIT--YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQCLC-LNFLCLIDGLCKISKL 299 (414)
Q Consensus 224 ~~~~~~~~~~p~~~~--~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~-~~~~~li~~~~~~~~~ 299 (414)
..- +.++..- -..|+.+-.... -..+...+...-. ..+..|+. ..-.....++.+.|+.
T Consensus 217 ~~v-----ie~~~aeR~rAvLLtAkA~s~------------ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~ 279 (531)
T COG3898 217 AKV-----IEKDVAERSRAVLLTAKAMSL------------LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNL 279 (531)
T ss_pred HHh-----hchhhHHHHHHHHHHHHHHHH------------hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccch
Confidence 442 4444432 222222211110 0111222222222 22223442 2233345678888888
Q ss_pred hHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHH
Q 043191 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS-TGLFP-DLYTYNILINCFCKIGRVSS 377 (414)
Q Consensus 300 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~-~~~~p-~~~~~~~li~~~~~~g~~~~ 377 (414)
.++-.+++.+-+....|+ .+.. -.+.+.|+. +.. -+++... ..++| +....-.+..+-...|++..
T Consensus 280 rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gdt--a~d------RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ 347 (531)
T COG3898 280 RKGSKILETAWKAEPHPD--IALL--YVRARSGDT--ALD------RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSA 347 (531)
T ss_pred hhhhhHHHHHHhcCCChH--HHHH--HHHhcCCCc--HHH------HHHHHHHHHhcCccchHHHHHHHHHHHhccchHH
Confidence 888888888877644443 3322 223444543 222 2222211 12233 34555666677777777777
Q ss_pred HHHHHHhhhhCCCCCCHHHHHHHHHHHH
Q 043191 378 GFVIFGRILPSCFTPDAVTFTSLIKILE 405 (414)
Q Consensus 378 a~~~~~~m~~~g~~p~~~~~~~li~~~~ 405 (414)
|..--+...+ ..|....|..|.+.-.
T Consensus 348 ARa~Aeaa~r--~~pres~~lLlAdIee 373 (531)
T COG3898 348 ARAKAEAAAR--EAPRESAYLLLADIEE 373 (531)
T ss_pred HHHHHHHHhh--hCchhhHHHHHHHHHh
Confidence 7665555544 3566666666555443
No 219
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.24 Score=42.56 Aligned_cols=155 Identities=12% Similarity=-0.011 Sum_probs=113.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhcCCc
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT---GLFPDRYTYNILINCFCKMGRV 141 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~~ 141 (414)
.-+|++.+|-..++++.+..| .|..+++..=.++.-.|+.+.-...+++..-. +++-....-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 456888999999999999876 88889998889999999998888888887643 2211223334445566788999
Q ss_pred chHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043191 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF---GCELDVFTYNTLINGLCRTGHTIVALNLF 218 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 218 (414)
++|++.-++..+.+ +.|.....++...+--.|+..++.++..+-... +--.-..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999888876 668888888888899999999999987765421 00001122323334456778999999999
Q ss_pred HHHH
Q 043191 219 EEMA 222 (414)
Q Consensus 219 ~~m~ 222 (414)
+.-.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7643
No 220
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.87 E-value=0.095 Score=46.23 Aligned_cols=128 Identities=13% Similarity=-0.003 Sum_probs=81.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHhc----hhCCCCC-CHhhHHHHHHHHHhcCChhhhhh-hhhHHHHHHHHHhCCCCC
Q 043191 284 LNFLCLIDGLCKISKLKIARELFQSL----PRAGLMP-NVVTYNILIRGLCNDGQMDETKH-YETVFLLFKRLNSTGLFP 357 (414)
Q Consensus 284 ~~~~~li~~~~~~~~~~~a~~~~~~m----~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~-~~~a~~~~~~m~~~~~~p 357 (414)
..|..|-..|.-.|+++.|+...+.= ++.|-+. ....+..+-.++.-.|+++.|.+ |...+.+-.++..+ ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r--~v 273 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR--TV 273 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch--hH
Confidence 44666666677778899998776642 2333221 23457777788888899988877 22222222222222 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC-----CCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPS-----CFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 358 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
...+..+|...|.-..++++|+.++.+-+.. ...-....+.+|..+|...|..++|
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 3445567788888888899999887654321 1222567888999999888887765
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.75 E-value=0.89 Score=37.18 Aligned_cols=150 Identities=15% Similarity=0.165 Sum_probs=81.9
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCc
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRP-PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY--TYNILINCFCKMGRV 141 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~ 141 (414)
+..|++++|.+.|+.+....|..+ -..+.-.++.++.+.|+++.|...++++.+. .|+.. -+...+.+.+.....
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHHhC
Confidence 356889999999999988766322 2345667778888999999999999997765 33322 122222222211111
Q ss_pred chHHHHHHHHHHcCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043191 142 SHGFVVLGRILRSCF---TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLF 218 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 218 (414)
.... ...... .--...+..++.-|=.+.-..+|...+..+.+. . ...--.+..-|.+.|.+..|..-+
T Consensus 94 ~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 94 PGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred ccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHHHHH
Confidence 0000 000000 001123455556666666667776666665532 0 111122567788999999999999
Q ss_pred HHHHcCC
Q 043191 219 EEMANGN 225 (414)
Q Consensus 219 ~~m~~~~ 225 (414)
+.+.+.-
T Consensus 165 ~~v~~~y 171 (203)
T PF13525_consen 165 QYVIENY 171 (203)
T ss_dssp HHHHHHS
T ss_pred HHHHHHC
Confidence 9988853
No 222
>PRK15331 chaperone protein SicA; Provisional
Probab=95.65 E-value=0.21 Score=38.51 Aligned_cols=89 Identities=12% Similarity=-0.009 Sum_probs=63.6
Q ss_pred HHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043191 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371 (414)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 371 (414)
-+-..|++++|..+|.-+.-.+.. |..-|..|-.++-..+++++|.. .|......+. -|+..+-....+|..
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~------~Y~~A~~l~~-~dp~p~f~agqC~l~ 117 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACD------LYAVAFTLLK-NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHccc-CCCCccchHHHHHHH
Confidence 345668888888888877665443 55556667777777788777777 7776665543 255556666778888
Q ss_pred cCCHHHHHHHHHhhhhC
Q 043191 372 IGRVSSGFVIFGRILPS 388 (414)
Q Consensus 372 ~g~~~~a~~~~~~m~~~ 388 (414)
.|+.+.|...|+..++.
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 88888888888888773
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=95.64 E-value=0.1 Score=40.11 Aligned_cols=94 Identities=7% Similarity=-0.089 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 043191 94 NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173 (414)
Q Consensus 94 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 173 (414)
-....-+...|++++|..+|.-+...+.. +..-+..|..++-..+++++|...|......+ .-|...+-....++...
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHh
Confidence 34445566788899999998887765322 45556667777778888899998888776655 23555566667788888
Q ss_pred CCHHHHHHHHHHHHHc
Q 043191 174 SRIMEAAALFTKLRVF 189 (414)
Q Consensus 174 g~~~~a~~~~~~m~~~ 189 (414)
|+.+.|...|+.....
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999988888763
No 224
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.63 E-value=1.1 Score=37.34 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=106.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhc----
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRP-PVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDRYTYNILINCFCKM---- 138 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~---- 138 (414)
++.|++++|.+.|+.+....|..| ...+--.++.++.+.+++++|+..+++.... +-.||. -|..-|.+.+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCC
Confidence 467999999999999998877433 3456667777888999999999999997755 334443 344445444432
Q ss_pred ---CCcchHHHHHH---HHHHc----CCCCCHHhH------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 043191 139 ---GRVSHGFVVLG---RILRS----CFTPDAVTF------------TSLIKDLCAESRIMEAAALFTKLRVFGCELD-- 194 (414)
Q Consensus 139 ---~~~~~a~~~~~---~~~~~----~~~~~~~~~------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-- 194 (414)
++...+.+.+. .+++. ...+|...- -.+.+.|.+.|.+..|..-+++|.+. .+-+
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~ 202 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSA 202 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccc
Confidence 23333444444 44443 233443321 13456788999999999999999886 2222
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 195 -VFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 195 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
....-.|..+|.+.|-.++|.+.-.-+..
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 23556678899999999999888777765
No 225
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.45 E-value=1.1 Score=40.40 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=112.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH-hHHHHH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV-TFTSLI 167 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li 167 (414)
..+|...|....+..-.+.|..+|-++.+.| +.++..+++++|..++ .|+..-|..+|+.-... -||.. --+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4568888888888888999999999999998 5678889999998775 56888899999876554 33443 445677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHH
Q 043191 168 KDLCAESRIMEAAALFTKLRVFGCELD--VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~ 245 (414)
..+...++-+.|..+|+..... +..+ ...|..+|.-=..-|++..|..+=+.|.. ..|...+......-
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--------~~pQen~~evF~Sr 544 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--------LVPQENLIEVFTSR 544 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--------HcCcHhHHHHHHHH
Confidence 8889999999999999965442 1223 56899999988999999999988888887 45665555555554
Q ss_pred HHh
Q 043191 246 LCK 248 (414)
Q Consensus 246 ~~~ 248 (414)
|.-
T Consensus 545 y~i 547 (660)
T COG5107 545 YAI 547 (660)
T ss_pred Hhh
Confidence 443
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.42 E-value=1.8 Score=38.63 Aligned_cols=182 Identities=12% Similarity=0.058 Sum_probs=103.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHcCCCCCCccccC
Q 043191 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFG---CELDVFTYNTLINGLCR---TGHTIVALNLFEEMANGNGEFGVVCEP 234 (414)
Q Consensus 161 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~p 234 (414)
.+...++-.|-...+++...++++.+...- +.-...+--...-++-+ .|+.++|.+++..+.... -.+
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~------~~~ 215 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD------ENP 215 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc------CCC
Confidence 334455567999999999999999998641 11122222334555667 899999999999965554 467
Q ss_pred chhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCC
Q 043191 235 DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL 314 (414)
Q Consensus 235 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 314 (414)
+..+|..+...|-..- .+ +.+......++|+..|.+.-+.
T Consensus 216 ~~d~~gL~GRIyKD~~-----------------~~---------------------s~~~d~~~ldkAi~~Y~kgFe~-- 255 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLF-----------------LE---------------------SNFTDRESLDKAIEWYRKGFEI-- 255 (374)
T ss_pred ChHHHHHHHHHHHHHH-----------------HH---------------------cCccchHHHHHHHHHHHHHHcC--
Confidence 7778877776663320 00 0001112266677777654332
Q ss_pred CCCHhhHHHHHHHHHhcCC-hhhhhhhhhHHHHHHH-HHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 315 MPNVVTYNILIRGLCNDGQ-MDETKHYETVFLLFKR-LNSTGL---FPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 315 ~p~~~~~~~li~~~~~~g~-~~~a~~~~~a~~~~~~-m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
.||..+=-.+...+.-.|. .+...+..+....+.. +.++|. ..+---+.+++.++.-.|+.++|.+..++|.+.
T Consensus 256 ~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 256 EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2333221111122222222 2222121111112222 222332 234456688899999999999999999999975
No 227
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.40 E-value=0.27 Score=45.36 Aligned_cols=129 Identities=13% Similarity=0.083 Sum_probs=76.8
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHH
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVV 147 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 147 (414)
++++++.+....-.-. + .-+....+.++..+-+.|-.+.|+++-++-. .-.....+.|+++.|.++
T Consensus 275 ~d~~~v~~~i~~~~ll-~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLL-P-NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEI 340 (443)
T ss_dssp T-HHH-----HHHHTG-G-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHH
T ss_pred CChhhhhhhhhhhhhc-c-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHH
Confidence 5666765555411110 1 1224557788888888888888887754322 224455677887777755
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 148 LGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
... ..+...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+.....|
T Consensus 341 a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 341 AKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp CCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 433 23667888888888888888888888877642 4556666777788777777777766655
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.22 E-value=0.23 Score=41.60 Aligned_cols=99 Identities=13% Similarity=0.086 Sum_probs=69.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCC--CCCHHhHHH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL--FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF--TPDAVTFTS 165 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 165 (414)
...|+.-+..+ +.|++..|...|....+... .-....+--|..++...|+++.|..+|..+.+.-. +--+..+--
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 34677666644 56668888888888876621 11234456678888888888888888888877521 122355666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 043191 166 LIKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
|.....+.|+.++|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777788888888888888888775
No 229
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.19 E-value=1 Score=34.21 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 043191 94 NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138 (414)
Q Consensus 94 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 138 (414)
..++..+.+.+.+.....+++.+...+. .+...++.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 3444555545555555555555544432 3444555555555543
No 230
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.11 E-value=0.84 Score=34.39 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=43.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC-CC-CCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLTG-LF-PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~g-~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 173 (414)
-.....+.|++++|.+.|+.+..+- .. -....--.++.+|.+.+++++|...+++.++......-.-|...+.+++.-
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3344456677777777777776551 00 123344556667777777777777777777654322233455555554443
No 231
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.07 E-value=1.6 Score=41.23 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=38.0
Q ss_pred HHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043191 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370 (414)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 370 (414)
..+.+...+..|-++|..|-. ...+++.....+++++|.. +-+..-+. .||+ |-...+-++
T Consensus 755 ~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFa------lAe~hPe~--~~dV--y~pyaqwLA 815 (1081)
T KOG1538|consen 755 TYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFA------LAEKHPEF--KDDV--YMPYAQWLA 815 (1081)
T ss_pred HHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHh------hhhhCccc--cccc--cchHHHHhh
Confidence 333444455555555555532 2344555566666666555 44443321 2332 333344455
Q ss_pred hcCCHHHHHHHHHhh
Q 043191 371 KIGRVSSGFVIFGRI 385 (414)
Q Consensus 371 ~~g~~~~a~~~~~~m 385 (414)
...++++|.+.|.+.
T Consensus 816 E~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhHHHHHHHHHHh
Confidence 666666666666554
No 232
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.05 E-value=1.3 Score=34.87 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=89.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCc
Q 043191 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235 (414)
Q Consensus 156 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~ 235 (414)
..|+...--.|..++.+.|+..+|...|++....-..-|....-.+.++....+++..|...++++.+.+... -.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~---r~pd 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF---RSPD 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc---CCCC
Confidence 4667777777888888888888888888887764455677777777788888888888888888887644211 2233
Q ss_pred hhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCC
Q 043191 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315 (414)
Q Consensus 236 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 315 (414)
.. ..+.+.+...|++.+|+.-|+.....-
T Consensus 162 ~~-------------------------------------------------Ll~aR~laa~g~~a~Aesafe~a~~~y-- 190 (251)
T COG4700 162 GH-------------------------------------------------LLFARTLAAQGKYADAESAFEVAISYY-- 190 (251)
T ss_pred ch-------------------------------------------------HHHHHHHHhcCCchhHHHHHHHHHHhC--
Confidence 21 223445556677777777777776643
Q ss_pred CCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh
Q 043191 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352 (414)
Q Consensus 316 p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~ 352 (414)
|+...-.-.-..+.+.|+.+++.. ....+++.+.+
T Consensus 191 pg~~ar~~Y~e~La~qgr~~ea~a--q~~~v~d~~~r 225 (251)
T COG4700 191 PGPQARIYYAEMLAKQGRLREANA--QYVAVVDTAKR 225 (251)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHH--HHHHHHHHHHh
Confidence 333322222334456665555532 33446666665
No 233
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.05 E-value=1.4 Score=40.72 Aligned_cols=157 Identities=13% Similarity=0.090 Sum_probs=90.3
Q ss_pred HHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHh
Q 043191 170 LCAESRIMEAAALFTKLR-VFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248 (414)
Q Consensus 170 ~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~ 248 (414)
..-.++++++.++.+.-. -..+ ...-.+.++.-+-+.|..+.|+++-.+-..
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------------------- 323 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------------------- 323 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------------------
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------------------
Confidence 344566666555553111 1111 133456666666677777777665333221
Q ss_pred hcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHH
Q 043191 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328 (414)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 328 (414)
.+...++.|+++.|.+..... .+...|..|.+...+.|+++-|++.|.+..+ |..|+--|
T Consensus 324 --------rFeLAl~lg~L~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy 383 (443)
T PF04053_consen 324 --------RFELALQLGNLDIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLY 383 (443)
T ss_dssp --------HHHHHHHCT-HHHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHH
T ss_pred --------HhHHHHhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHH
Confidence 111222456666666655411 1344688888889999999999999988764 67777778
Q ss_pred HhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 043191 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385 (414)
Q Consensus 329 ~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 385 (414)
.-.|+.+.-.+ +.+.....| -++....++.-.|+.++..+++.+-
T Consensus 384 ~~~g~~~~L~k------l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 384 SSTGDREKLSK------LAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHCT-HHHHHH------HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHhCCHHHHHH------HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88888777666 666666554 2566667777889999888887654
No 234
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.00 E-value=2.2 Score=37.14 Aligned_cols=140 Identities=16% Similarity=0.237 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCC----hHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhh
Q 043191 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCR--TGH----TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249 (414)
Q Consensus 176 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~----~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~ 249 (414)
+++...+++.|.+.|+..+..+|-+....... ..+ ..+|..+|+.|++...-. ..++...+..++..-..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL---Ts~~D~~~a~lLA~~~~- 153 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL---TSPEDYPFAALLAMTSE- 153 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---cCccchhHHHHHhcccc-
Confidence 44567788888888888888777664333333 222 567889999999876322 23445555555443111
Q ss_pred cCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHh-hHHHHHHHH
Q 043191 250 AGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV-TYNILIRGL 328 (414)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~ 328 (414)
..+ .-.+.++.+|+.+.+.|...+.. -+.+-+-++
T Consensus 154 ----------------~~e----------------------------~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL 189 (297)
T PF13170_consen 154 ----------------DVE----------------------------ELAERMEQCYQKLADAGFKKGNDLQFLSHILAL 189 (297)
T ss_pred ----------------cHH----------------------------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHh
Confidence 111 11355667777777766654332 333333333
Q ss_pred HhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 043191 329 CNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366 (414)
Q Consensus 329 ~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li 366 (414)
......+. +..+..+++.+.+.|+++....|..+.
T Consensus 190 ~~~~~~~~---v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 190 SEGDDQEK---VARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred ccccchHH---HHHHHHHHHHHHHcCCccccccccHHH
Confidence 33332222 234555888888888887777665543
No 235
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.95 E-value=1.2 Score=34.54 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=52.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH-hHHHH--HHHHHhcCCHH
Q 043191 102 KTKHYDTVLSLFKRLNLTGLFPD-RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV-TFTSL--IKDLCAESRIM 177 (414)
Q Consensus 102 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~~ 177 (414)
+.+..++|+.-|..+.+.|...= .-.-..+.......|+...|...|+++-...-.|-.. -...| .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 34445555555555554433210 0011112223344555555555555554432222221 11111 11234455555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 178 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.+..-.+.+...|-+.-...-.+|.-+-.+.|++.+|.+.|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5555555554443222233334455555555666666666655554
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.93 E-value=3.3 Score=38.85 Aligned_cols=145 Identities=12% Similarity=0.075 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC-----HhhHHHHHHHHHh----cCCcchHHHHHHHHHHcCCCCCHHh
Q 043191 93 FNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPD-----RYTYNILINCFCK----MGRVSHGFVVLGRILRSCFTPDAVT 162 (414)
Q Consensus 93 ~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (414)
+..++....=.|+-+.+++++.+..+. ++.-. .-+|+.++..+.. ..+.+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 345566666678888899888876543 22211 1234444444443 34567788889888876 566666
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhh
Q 043191 163 FTSLI-KDLCAESRIMEAAALFTKLRVFG--C-ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238 (414)
Q Consensus 163 ~~~li-~~~~~~g~~~~a~~~~~~m~~~g--~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~ 238 (414)
|...- +.+...|+.++|++.|++..... . +.....+--+.-.+.-..+|++|.+.|..+.+.. ..+..+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~WSka~ 341 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------KWSKAF 341 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------ccHHHH
Confidence 54433 45667899999999999755321 0 1123344456666778899999999999998754 344445
Q ss_pred HHHHHHHH
Q 043191 239 YSTIIDGL 246 (414)
Q Consensus 239 ~~~li~~~ 246 (414)
|.-+..+|
T Consensus 342 Y~Y~~a~c 349 (468)
T PF10300_consen 342 YAYLAAAC 349 (468)
T ss_pred HHHHHHHH
Confidence 54444443
No 237
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.87 E-value=2.9 Score=37.89 Aligned_cols=138 Identities=15% Similarity=0.123 Sum_probs=75.9
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHhcC
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPP----VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC--FCKMG 139 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~~ 139 (414)
+.+++.+|.++|.++.+..-..|. ...-+.++.+|...+ .+.....+....+. .| ...|-.+..+ +-+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 567788888888887664321111 112345566665433 44444444444433 22 2334444433 34566
Q ss_pred CcchHHHHHHHHHHc--CCC------------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHH
Q 043191 140 RVSHGFVVLGRILRS--CFT------------PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG----CELDVFTYNTL 201 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~--~~~------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~~~l 201 (414)
++++|.+.+..-.+. +.. +|...=+..+..+...|.+.++..+++++...= ..-+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 777777777665554 211 122233566677778888888888777776542 23566777765
Q ss_pred HHHHHh
Q 043191 202 INGLCR 207 (414)
Q Consensus 202 i~~~~~ 207 (414)
+-.+++
T Consensus 174 vlmlsr 179 (549)
T PF07079_consen 174 VLMLSR 179 (549)
T ss_pred HHHHhH
Confidence 444443
No 238
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=4 Score=39.41 Aligned_cols=289 Identities=11% Similarity=0.059 Sum_probs=159.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHc-CC-CCCHHhHHHHHHHHHh
Q 043191 95 ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS-CF-TPDAVTFTSLIKDLCA 172 (414)
Q Consensus 95 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~ 172 (414)
.+|.-+...+.+..|+++-..+...-.. +...|.....-+.+..+.. -..+++.+.+. +. -.....|..+.+-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 4556666777888888887766532111 1456666666666553221 12233333221 11 1345567888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHH-----
Q 043191 173 ESRIMEAAALFTKLRVFGCE----LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII----- 243 (414)
Q Consensus 173 ~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li----- 243 (414)
+|+.+.|..+++.=...+.. .+..-+..-+.-+.+.|+.+-...++-++..+- +...+...+
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---------~~s~l~~~l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---------NRSSLFMTLRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---------HHHHHHHHHHhchh
Confidence 99999999887753332211 112234455666677888887777777766432 111121111
Q ss_pred -----HHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhh------ccccccHHHHHHHHHhcCChh----------HH
Q 043191 244 -----DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRV------QCLCLNFLCLIDGLCKISKLK----------IA 302 (414)
Q Consensus 244 -----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~li~~~~~~~~~~----------~a 302 (414)
.-+++.. +..+.......++..++...+..... .+-........++|.+..... +-
T Consensus 591 a~~lY~~~~r~~---~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kL 667 (829)
T KOG2280|consen 591 ALSLYRQFMRHQ---DRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKL 667 (829)
T ss_pred hhHHHHHHHHhh---chhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 1222211 11112222223333333333331110 011111222334444443321 11
Q ss_pred HHHHHhch-hCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043191 303 RELFQSLP-RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381 (414)
Q Consensus 303 ~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 381 (414)
+.+.+.+. +.|..-...+.+--+.-+...|+..+|.+ +-.+.+ .||...|-.=+.+++..++|++-+++
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~q------l~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQ------LKSDFK----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHH------HHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 22222222 22334455667777888888999888888 655554 57999999999999999999998888
Q ss_pred HHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 382 FGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 382 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
-+.+.. +.-|.-...+|.+.|+.+||
T Consensus 738 Akskks------PIGy~PFVe~c~~~~n~~EA 763 (829)
T KOG2280|consen 738 AKSKKS------PIGYLPFVEACLKQGNKDEA 763 (829)
T ss_pred HhccCC------CCCchhHHHHHHhcccHHHH
Confidence 777652 33355588899999998887
No 239
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.81 E-value=0.86 Score=35.06 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=24.6
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT 119 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 119 (414)
++.+++..+++.+.-..|..+...++...+ +.+.|+|.+|+.+|+.+...
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 355555555555555544333333333222 34555566666666555443
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.66 E-value=0.95 Score=42.39 Aligned_cols=166 Identities=14% Similarity=0.087 Sum_probs=107.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCch-----hhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhh
Q 043191 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA-----ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273 (414)
Q Consensus 199 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~-----~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 273 (414)
..++...+=.|+-+.+++.+.+..+.++ +.-.. -.|..++..++... ......+.+.++
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~-----i~~~la~L~LL~y~~~~~~~~~~~-----------~~~~~~~~a~~l 255 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSEN-----IRSPLAALVLLWYHLVVPSFLGID-----------GEDVPLEEAEEL 255 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCC-----cchHHHHHHHHHHHHHHHHHcCCc-----------ccCCCHHHHHHH
Confidence 3345555667999999999988776542 22221 23333333333320 024677888888
Q ss_pred hh-hhhhccccccHHHHH-HHHHhcCChhHHHHHHHhchhCC---CCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHH
Q 043191 274 FP-LVRVQCLCLNFLCLI-DGLCKISKLKIARELFQSLPRAG---LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348 (414)
Q Consensus 274 ~~-~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~ 348 (414)
+. +....|+...|...- +.+...|++++|++.|++..... .+.....+--+.-.+.-..++++|.. .|.
T Consensus 256 L~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~------~f~ 329 (468)
T PF10300_consen 256 LEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE------YFL 329 (468)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH------HHH
Confidence 88 777788877776654 56678899999999999765321 12234455566677888899988888 999
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHhhhh
Q 043191 349 RLNSTGLFPDLYTYNILINC-FCKIGRV-------SSGFVIFGRILP 387 (414)
Q Consensus 349 ~m~~~~~~p~~~~~~~li~~-~~~~g~~-------~~a~~~~~~m~~ 387 (414)
.+.+.. ..+..+|.-+..+ +...|+. ++|.++|.+...
T Consensus 330 ~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 998753 2244444444333 3456777 888888877653
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.64 E-value=0.89 Score=33.43 Aligned_cols=89 Identities=12% Similarity=0.019 Sum_probs=65.8
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCH---hhHHHHHHHHHhcC
Q 043191 64 DITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDR---YTYNILINCFCKMG 139 (414)
Q Consensus 64 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~---~~~~~li~~~~~~~ 139 (414)
+...|+.+.|++.|......-| ....+||.-.+++.-.|+.++|++=+++..+. |-+ +. ..|..-...|...|
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P--~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAP--ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcc--cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 3456889999999998887765 66778999999999999999999988887654 322 22 22333344566778
Q ss_pred CcchHHHHHHHHHHcC
Q 043191 140 RVSHGFVVLGRILRSC 155 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~~ 155 (414)
+.+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888777766
No 242
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.62 E-value=0.22 Score=42.35 Aligned_cols=102 Identities=16% Similarity=0.069 Sum_probs=79.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
...+++..=+..++...+. .-..++..++..+...|+++.+.+.++++.... +-+...|..+|.+|.+.|+...|
T Consensus 132 ~~d~~f~~WV~~~R~~l~e----~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~a 206 (280)
T COG3629 132 LGDDRFDEWVLEQRRALEE----LFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAA 206 (280)
T ss_pred CCCchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHH
Confidence 3444555555555544432 225678899999999999999999999998763 33888999999999999999999
Q ss_pred HHHHHHHHH-----cCCCCCHHhHHHHHHHHH
Q 043191 145 FVVLGRILR-----SCFTPDAVTFTSLIKDLC 171 (414)
Q Consensus 145 ~~~~~~~~~-----~~~~~~~~~~~~li~~~~ 171 (414)
+..|+++.+ .|+.|...+.........
T Consensus 207 i~~y~~l~~~~~edlgi~P~~~~~~~y~~~~~ 238 (280)
T COG3629 207 IRAYRQLKKTLAEELGIDPAPELRALYEEILR 238 (280)
T ss_pred HHHHHHHHHHhhhhcCCCccHHHHHHHHHHhc
Confidence 999998876 489999988887777733
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.51 Score=41.79 Aligned_cols=142 Identities=11% Similarity=-0.016 Sum_probs=79.1
Q ss_pred hhcCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 043191 58 KSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK 137 (414)
Q Consensus 58 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 137 (414)
+.....+++.|++..|...|+.....-.. .+.-+.++..... . .-..++..+.-++.+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~--------------~~~~~~ee~~~~~-~-------~k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEY--------------RRSFDEEEQKKAE-A-------LKLACHLNLAACYLK 269 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhc--------------cccCCHHHHHHHH-H-------HHHHHhhHHHHHHHh
Confidence 34445678889999999988876432110 0000111111111 1 112345556666777
Q ss_pred cCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCh-HHHH
Q 043191 138 MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD-VFTYNTLINGLCRTGHT-IVAL 215 (414)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~-~~a~ 215 (414)
.+++..|++.-+..+..+ +.|.-..-.--.+|...|+++.|+..|+++.+. .|+ -.+-+.|+..-.+.... +...
T Consensus 270 l~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kek 346 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEK 346 (397)
T ss_pred hhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777665 455555555666777777777777777777765 343 33334444443333333 3335
Q ss_pred HHHHHHHcC
Q 043191 216 NLFEEMANG 224 (414)
Q Consensus 216 ~~~~~m~~~ 224 (414)
++|..|...
T Consensus 347 k~y~~mF~k 355 (397)
T KOG0543|consen 347 KMYANMFAK 355 (397)
T ss_pred HHHHHHhhc
Confidence 666666653
No 244
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.44 E-value=1.8 Score=33.66 Aligned_cols=127 Identities=11% Similarity=0.012 Sum_probs=88.9
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh-hHHHHHH--HHHhcCC
Q 043191 64 DITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY-TYNILIN--CFCKMGR 140 (414)
Q Consensus 64 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~--~~~~~~~ 140 (414)
+.+.++.++|+.-|..+.+.+.-.-.+..--.+....++.|+...|...|++.-...-.|-.. -...|=. .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 568889999999999998877522233333445556788999999999999988664444332 1222222 3456778
Q ss_pred cchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043191 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190 (414)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 190 (414)
++....-.+-+-..+-+.-...-.+|--+--+.|++..|.+.|..+....
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 88888877777665544444555677777889999999999999987643
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.98 Score=40.11 Aligned_cols=66 Identities=14% Similarity=-0.022 Sum_probs=56.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC
Q 043191 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226 (414)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 226 (414)
..+++.|.-+|.+.+++..|+..-.+....+ ++|.-..---..+|...|+++.|...|+.+.+...
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 4467788889999999999999999998876 56777777778999999999999999999987653
No 246
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=6.1 Score=38.81 Aligned_cols=87 Identities=17% Similarity=0.199 Sum_probs=47.2
Q ss_pred HHHHhhhcCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043191 53 LKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132 (414)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 132 (414)
+++....+..-+.+.|++++|.+.+-+-...- .| ..+|.-|....+..+-..+++.+.+.|+. +...-..|+
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l--e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLL 438 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFL--EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLL 438 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC--Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHH
Confidence 33444444455566667777666554432211 11 23444555555555566666666666654 445555677
Q ss_pred HHHHhcCCcchHHHH
Q 043191 133 NCFCKMGRVSHGFVV 147 (414)
Q Consensus 133 ~~~~~~~~~~~a~~~ 147 (414)
.+|.+.++.+.-.+.
T Consensus 439 ncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 439 NCYIKLKDVEKLTEF 453 (933)
T ss_pred HHHHHhcchHHHHHH
Confidence 777777665544433
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.02 E-value=2.1 Score=35.97 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=77.6
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHH
Q 043191 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCF--TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG--CELDVFTYNT 200 (414)
Q Consensus 125 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~ 200 (414)
...|+..+..+ +.|++..|.+.|...++... .-....+-.|..++...|++++|..+|..+.+.- .+--....--
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 44788776655 77889999999999998631 2223446678899999999999999999987742 1122466777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 201 LINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 201 li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
|..+..+.|+.++|..+|+++.+..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 8888899999999999999999875
No 248
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=4.6 Score=36.19 Aligned_cols=153 Identities=14% Similarity=0.000 Sum_probs=101.2
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH---H----------
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI---L---------- 131 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---l---------- 131 (414)
.-.|+.++|.+.--.+++.+. .+....-.-..++.-.++.+.|..-|++.... .|+...-.. .
T Consensus 180 ~~~~~~~~a~~ea~~ilkld~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLDA--TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhcccchhHHHHHHHHHhccc--chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhh
Confidence 345677788887777776654 33333322223344567788888888877655 344332221 1
Q ss_pred HHHHHhcCCcchHHHHHHHHHHc---CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHH
Q 043191 132 INCFCKMGRVSHGFVVLGRILRS---CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF---TYNTLINGL 205 (414)
Q Consensus 132 i~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~ 205 (414)
..-..+.|++..|.+.|.+.+.. ...++...|-....+..+.|+.++|+.--++.... |.. .|..-..++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~ 331 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCH 331 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHH
Confidence 12345678999999999998875 35666677777778889999999999988877743 332 222333455
Q ss_pred HhcCChHHHHHHHHHHHcCC
Q 043191 206 CRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 206 ~~~g~~~~a~~~~~~m~~~~ 225 (414)
...++|++|.+-|+...+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 56788999999998887754
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=93.82 E-value=5.3 Score=36.63 Aligned_cols=130 Identities=11% Similarity=0.089 Sum_probs=89.8
Q ss_pred hhH--HHHHHHHHhcC-----ChhHHHHHHHHHHh-CCCCCC-HhhHHHHHHHHHhc---------CCcchHHHHHHHHH
Q 043191 91 TSF--NILFGCLAKTK-----HYDTVLSLFKRLNL-TGLFPD-RYTYNILINCFCKM---------GRVSHGFVVLGRIL 152 (414)
Q Consensus 91 ~~~--~~li~~~~~~~-----~~~~a~~~~~~m~~-~g~~p~-~~~~~~li~~~~~~---------~~~~~a~~~~~~~~ 152 (414)
..| ...+++..... ..+.|+.+|.+... ..+.|+ ...|..+..++... .+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66666665532 35678888998872 233554 44555444433221 23456677777777
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD-VFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 153 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+.+ +-|......+..++.-.++++.|...|++.... .|| ..+|......+.-+|+.++|.+.+++..+
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 776 568888888888888888999999999998876 344 45555555566678999999999999766
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.73 E-value=4.5 Score=37.28 Aligned_cols=63 Identities=16% Similarity=-0.005 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 162 TFTSLIKDLCAESRIMEAAALFTKLRVFG-CELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
+-..+..++-+.|+.++|.+.|++|.+.. ..-+..+...|+.++...+.+.++..++.+..+.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 33456666677899999999999997642 1113446778999999999999999999998653
No 251
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.60 E-value=3 Score=33.18 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=47.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD--VFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 161 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567788888888888888888888887644333 345667778888888888888887777653
No 252
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.56 E-value=5.6 Score=36.14 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=78.3
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHhchhCC-CCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHH-
Q 043191 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAG-LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY- 360 (414)
Q Consensus 283 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~- 360 (414)
+..|.+.+++-.+..-++.|..+|-+..+.| +.+++..++++|.-++. |+..-|.. +|+--... -||..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~------ifelGl~~--f~d~~~ 467 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYN------IFELGLLK--FPDSTL 467 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHH------HHHHHHHh--CCCchH
Confidence 4456777888888888899999999998888 56788888888887664 55555555 66654433 23433
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC--HHHHHHHHHHHHHcCCc
Q 043191 361 TYNILINCFCKIGRVSSGFVIFGRILPSCFTPD--AVTFTSLIKILEINSFF 410 (414)
Q Consensus 361 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~ 410 (414)
.-+..+..+...++-..|..+|+..+++ +.-+ ..+|..+|..=..-|+.
T Consensus 468 y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 468 YKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcch
Confidence 3355566667778888888888755443 1212 45666666666555554
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=93.54 E-value=5.9 Score=36.31 Aligned_cols=150 Identities=13% Similarity=0.068 Sum_probs=98.9
Q ss_pred CHHhHHHHHHHHHhcCCCC-CCHhhHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 043191 69 TPNEALCVFDYMLNMRPSR-PPVTSFNILFGCLAKT---------KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138 (414)
Q Consensus 69 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 138 (414)
..+.|+.+|.+........ .....|..+..++... ....+|.++-++..+.+ .-|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4478999999998322212 3355555555444322 23456677777777664 33777888788877888
Q ss_pred CCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHH
Q 043191 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD---VFTYNTLINGLCRTGHTIVAL 215 (414)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~ 215 (414)
++++.|..+|++....+ +-...+|-.....+.-+|+.++|.+.+++..+. .|. .......+..|+.. ..+.|.
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999998874 334555666666677789999999999996654 343 23334445566654 467787
Q ss_pred HHHHHHHc
Q 043191 216 NLFEEMAN 223 (414)
Q Consensus 216 ~~~~~m~~ 223 (414)
+++-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 77655443
No 254
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.51 E-value=1.3 Score=35.25 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H------HH
Q 043191 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPD--AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD-V------FT 197 (414)
Q Consensus 127 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~------~~ 197 (414)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+....--... . .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455566666666666666666666655432222 23345566666666666666666555443211111 1 12
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 198 YNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 198 ~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
|..+ .+...+++..|-+.|-+....-
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccCcCC
Confidence 2222 2234678888888877766443
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.49 E-value=0.42 Score=27.71 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043191 162 TFTSLIKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
++..+...|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555666666666666666666554
No 256
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.48 E-value=1.1 Score=38.13 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 043191 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV-----FGCELDVFTYNTL 201 (414)
Q Consensus 127 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~l 201 (414)
++..++..+...++++.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34556666777778888888888887775 55777888888888888888888888887765 4777777666655
Q ss_pred HHH
Q 043191 202 ING 204 (414)
Q Consensus 202 i~~ 204 (414)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.45 E-value=0.93 Score=34.15 Aligned_cols=75 Identities=11% Similarity=0.029 Sum_probs=55.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043191 65 ITSITPNEALCVFDYMLNMRPSR-PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 139 (414)
++.|++++|.+.|+.+....|.. -...+--.|+.++.+.+++++|...+++..+....--..-|...+.+++...
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 45689999999999999987742 2445677889999999999999999999887632222244665666655443
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.37 E-value=2.7 Score=31.85 Aligned_cols=127 Identities=10% Similarity=0.040 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhh
Q 043191 198 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLV 277 (414)
Q Consensus 198 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 277 (414)
...++..+.+.+........++.+...+ . .+....+.++..|++.. ..+....+..
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~------~-~~~~~~~~li~ly~~~~----------------~~~ll~~l~~- 65 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN------S-ENPALQTKLIELYAKYD----------------PQKEIERLDN- 65 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC------c-cchhHHHHHHHHHHHHC----------------HHHHHHHHHh-
Confidence 3456777777888899999999888766 2 56667888888887642 1222222221
Q ss_pred hhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhc-CChhhhhhhhhHHHHHHHHHhCCCC
Q 043191 278 RVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND-GQMDETKHYETVFLLFKRLNSTGLF 356 (414)
Q Consensus 278 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~a~~~~~~m~~~~~~ 356 (414)
..+......+++.|.+.+.++++.-++.++.. |...+..+... ++++.|.+ ...+-
T Consensus 66 --~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~------~~~~~------ 122 (140)
T smart00299 66 --KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIE------YFVKQ------ 122 (140)
T ss_pred --ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHH------HHHhC------
Confidence 12334455577788888888888888877643 22233333333 66766666 55441
Q ss_pred CCHHHHHHHHHHHHh
Q 043191 357 PDLYTYNILINCFCK 371 (414)
Q Consensus 357 p~~~~~~~li~~~~~ 371 (414)
-+...|..++..+..
T Consensus 123 ~~~~lw~~~~~~~l~ 137 (140)
T smart00299 123 NNPELWAEVLKALLD 137 (140)
T ss_pred CCHHHHHHHHHHHHc
Confidence 266777777766653
No 259
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.22 E-value=3.4 Score=37.46 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhCC----CCCCHHHHHHHHHHHHHc
Q 043191 361 TYNILINCFCKIGRVSSGFVIFGRILPSC----FTPDAVTFTSLIKILEIN 407 (414)
Q Consensus 361 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~ 407 (414)
.=++.++++...|++.++..++++|...= ...+..+|+.++-.+.++
T Consensus 130 l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 130 LDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 34677788899999999999999887653 447899999877666553
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.07 E-value=0.31 Score=28.27 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=30.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHH
Q 043191 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324 (414)
Q Consensus 285 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 324 (414)
++..+...|...|++++|.++|++..+.... |...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 4677889999999999999999999887443 45555444
No 261
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.92 E-value=3.6 Score=32.13 Aligned_cols=137 Identities=9% Similarity=0.158 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 043191 73 ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152 (414)
Q Consensus 73 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 152 (414)
-.+.++.+.+.+. .++...|..+++.+.+.|++.. +..+...++-+|.......+-.+. +....+.++=-+|.
T Consensus 13 llEYirSl~~~~i-~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 13 LLEYIRSLNQHNI-PVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHH
Confidence 3455555666666 7888899999999999998754 444555666777666655543333 23455666655665
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 153 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
++ =...+..++..+...|++-+|+.+.+..... +......++.+-.+.+|...-..+|+-..+.
T Consensus 86 kR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 86 KR----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 43 1114567778889999999999988775322 2233355667777777766655555555543
No 262
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.90 E-value=0.72 Score=31.81 Aligned_cols=58 Identities=9% Similarity=0.134 Sum_probs=47.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Q 043191 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404 (414)
Q Consensus 346 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 404 (414)
-++.+....+.|++....+.+++|.+.+|+..|+++|+-...+ +..+..+|..+++-.
T Consensus 29 ~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 29 GLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 6777777889999999999999999999999999999988744 233555777766543
No 263
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.88 E-value=5.4 Score=35.16 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=61.2
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHhch----hCCCCCCHhhHHH-----HHHHHHhcCChhhhhhh-hhHHHHHHHHH
Q 043191 282 LCLNFLCLIDGLCKISKLKIARELFQSLP----RAGLMPNVVTYNI-----LIRGLCNDGQMDETKHY-ETVFLLFKRLN 351 (414)
Q Consensus 282 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~~p~~~~~~~-----li~~~~~~g~~~~a~~~-~~a~~~~~~m~ 351 (414)
....+..|-+.|.+..++++|.-+..+.. ..++.--...|.. |..++...|.+..|.++ ++|.++ ..
T Consensus 161 Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl---al 237 (518)
T KOG1941|consen 161 ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL---AL 237 (518)
T ss_pred eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH---HH
Confidence 35668888999999999998876665542 2232211122332 34567778888777661 222222 22
Q ss_pred hCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 043191 352 STGLFPD-LYTYNILINCFCKIGRVSSGFVIFGRIL 386 (414)
Q Consensus 352 ~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 386 (414)
+.|-++. ......+.+.|...|+.+.|+.-|++..
T Consensus 238 ~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 238 QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3342221 2344566677888999999888777654
No 264
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.78 E-value=5.7 Score=34.61 Aligned_cols=131 Identities=11% Similarity=0.164 Sum_probs=83.1
Q ss_pred HHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh--cC----ChhHHHHHHHHHHhCCC---CCCHhhHHHHHHHHHhcCC
Q 043191 70 PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAK--TK----HYDTVLSLFKRLNLTGL---FPDRYTYNILINCFCKMGR 140 (414)
Q Consensus 70 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~~~ 140 (414)
+++.+.+++.+.+.+- +.+..+|-+....... .. ...+|.++|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gF-k~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGF-KRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhcc-CccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 4667788888888876 6665665443333322 22 35578999999998742 2345556666544 3333
Q ss_pred ----cchHHHHHHHHHHcCCCCCHH--hHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043191 141 ----VSHGFVVLGRILRSCFTPDAV--TFTSLIKDLCAESR--IMEAAALFTKLRVFGCELDVFTYNTLIN 203 (414)
Q Consensus 141 ----~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~ 203 (414)
.+.+..+|+.+.+.|+..+.. ....++..+....+ ..++.++++.+.+.|+++....|..+.-
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 356678888888877765443 33344433333222 4578899999999999988887776643
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.68 E-value=6.2 Score=34.15 Aligned_cols=63 Identities=8% Similarity=-0.108 Sum_probs=40.5
Q ss_pred HhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 161 VTFTSLIKDLCAESRIM---EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 161 ~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
.++..++.+|...+..+ +|..+++.+.... .-...++-.-+..+.+.++.+.+.+++.+|...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 35667777777777654 4555666664432 112445555566666788888888888888864
No 266
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.67 E-value=0.14 Score=27.75 Aligned_cols=32 Identities=13% Similarity=0.370 Sum_probs=22.3
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 043191 77 FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVL 110 (414)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 110 (414)
|++..+..| .+..+|+.+...+...|++++|+
T Consensus 2 y~kAie~~P--~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP--NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC--CCHHHHHHHHHHHHHCcCHHhhc
Confidence 344445554 67778888888888888887775
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.46 E-value=6 Score=36.51 Aligned_cols=135 Identities=16% Similarity=0.211 Sum_probs=82.5
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CC-----------------CC-
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---LF-----------------PD- 124 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~-----------------p~- 124 (414)
+..+++.-++.-++..+.++ .-..+|..|.. -......+|.++|++..+.| .. .+
T Consensus 180 RERnp~aRIkaA~eALei~p--dCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINP--DCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhh--hhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 34566666666666665543 23334433332 23344667777776654331 00 01
Q ss_pred ---HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 043191 125 ---RYTYNILINCFCKMGRVSHGFVVLGRILRSCFT-PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD-VFTYN 199 (414)
Q Consensus 125 ---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~ 199 (414)
..+-..+..++-+.|+.++|.+.+.+|.+..-. -+..+...|+.++...+.+.++..++.+-.+...+.+ ...|+
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 111233555667889999999999999875322 2345677899999999999999999999865443222 35676
Q ss_pred HHHHH
Q 043191 200 TLING 204 (414)
Q Consensus 200 ~li~~ 204 (414)
..+--
T Consensus 336 aALLk 340 (539)
T PF04184_consen 336 AALLK 340 (539)
T ss_pred HHHHH
Confidence 65443
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.37 E-value=7 Score=34.08 Aligned_cols=121 Identities=7% Similarity=-0.049 Sum_probs=79.9
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHc---CCCCCHHhHHHHHHHHHhcCCHH
Q 043191 101 AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS---CFTPDAVTFTSLIKDLCAESRIM 177 (414)
Q Consensus 101 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~ 177 (414)
.-.|++.+|-..++++.+. .+.|...+...=.+|.-.|+...-...++++.-. +++-.......+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3456666666666776654 2336666666667777778777777777777654 22222333444555566788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 178 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+|++.-++..+.+ +-|...-.++...+-..|++.++.+...+-..
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted 237 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTED 237 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhccc
Confidence 8888887777665 45677777777777788888888777665544
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.34 E-value=0.3 Score=26.83 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh
Q 043191 361 TYNILINCFCKIGRVSSGFVIFGRIL 386 (414)
Q Consensus 361 ~~~~li~~~~~~g~~~~a~~~~~~m~ 386 (414)
+|..|...|.+.|++++|+.++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788999999999999999999955
No 270
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.21 E-value=6.4 Score=33.65 Aligned_cols=124 Identities=12% Similarity=0.134 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHh-cC-CcchHHHHHHHHHHc-CCCCCHHhHHHHHH
Q 043191 93 FNILFGCLAKTKHYDTVLSLFKRLNL-TGLFPDRYTYNILINCFCK-MG-RVSHGFVVLGRILRS-CFTPDAVTFTSLIK 168 (414)
Q Consensus 93 ~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 168 (414)
|..|+. ++..+.+|+.+|+...- ..+--|..+...+++.... .+ ....-.++.+.+... |-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 444442 34456677777774332 2344577777777776655 22 233334455555433 34667777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043191 169 DLCAESRIMEAAALFTKLRVF-GCELDVFTYNTLINGLCRTGHTIVALNLFE 219 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 219 (414)
.+++.++|.+-.++++..... +...|...|..+|+.....|+..-...+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 888888888888887776554 445677788888888888888776666554
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.14 E-value=0.42 Score=26.23 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 043191 163 FTSLIKDLCAESRIMEAAALFTK 185 (414)
Q Consensus 163 ~~~li~~~~~~g~~~~a~~~~~~ 185 (414)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555554
No 272
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.11 E-value=4.2 Score=30.90 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=32.6
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT 119 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 119 (414)
.++++++..+++.+.-..|..+...+|...+ +...|+|.+|+++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 4667777777777776665444444444333 45677777777777777665
No 273
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.98 E-value=2 Score=30.00 Aligned_cols=58 Identities=10% Similarity=0.128 Sum_probs=42.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Q 043191 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404 (414)
Q Consensus 346 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 404 (414)
-++.+....+.|++....+.+++|.+.+++..|+++|+-+..+ +.+...+|..+++-+
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 6677777888999999999999999999999999999988765 333333777776543
No 274
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.96 E-value=3.9 Score=30.30 Aligned_cols=68 Identities=10% Similarity=0.129 Sum_probs=50.3
Q ss_pred CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCC
Q 043191 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFT 391 (414)
Q Consensus 317 ~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 391 (414)
+.......+..+...|+-+.-.+ +..++.. .-.+++...-.+..+|.+.|+..++-+++.+..+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdk------i~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDK------IYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHH------HHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHH------HHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 45567777888899999888777 8888765 34678999999999999999999999999999999864
No 275
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.22 E-value=9.2 Score=33.09 Aligned_cols=158 Identities=11% Similarity=0.135 Sum_probs=94.7
Q ss_pred CCCCCHHhHHHHHHHHHhcC-CCCCCHh------hHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCH----
Q 043191 65 ITSITPNEALCVFDYMLNMR-PSRPPVT------SFNILFGCLAKTKHYDTVLSLFKRLNLT--------GLFPDR---- 125 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~~p~~---- 125 (414)
.+.|+.+.|..++.+..... ...|+.. .||.-...+.+..+++.|..++++..+- ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35689999999999887755 2123222 3443333333333888888777764322 122332
Q ss_pred -hhHHHHHHHHHhcCCcc---hHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043191 126 -YTYNILINCFCKMGRVS---HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201 (414)
Q Consensus 126 -~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 201 (414)
.++..++.+|...+..+ +|..+++.+... ++-...++-.-+..+.+.++.+++.+++.+|...- .-....+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 34666777787777644 455666666444 22235556666777777999999999999998763 2133445555
Q ss_pred HHHH---HhcCChHHHHHHHHHHHcCC
Q 043191 202 INGL---CRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 202 i~~~---~~~g~~~~a~~~~~~m~~~~ 225 (414)
+..+ ... ....|...+..+....
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r 187 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNR 187 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHH
Confidence 5544 333 3455666666665544
No 276
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.20 E-value=20 Score=36.98 Aligned_cols=120 Identities=11% Similarity=0.130 Sum_probs=62.9
Q ss_pred ccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchh
Q 043191 232 CEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311 (414)
Q Consensus 232 ~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 311 (414)
..|+...+..+..+|+.. +.....+++|.-.++..+. ..-.+.+|..+|++.+|+.+-.++..
T Consensus 931 y~~~~e~~k~i~~~ya~h-----------L~~~~~~~~Aal~Ye~~Gk------lekAl~a~~~~~dWr~~l~~a~ql~~ 993 (1265)
T KOG1920|consen 931 YKPDSEKQKVIYEAYADH-----------LREELMSDEAALMYERCGK------LEKALKAYKECGDWREALSLAAQLSE 993 (1265)
T ss_pred eccCHHHHHHHHHHHHHH-----------HHHhccccHHHHHHHHhcc------HHHHHHHHHHhccHHHHHHHHHhhcC
Confidence 467777777777666553 1223334444333331111 11134566666778877777776643
Q ss_pred CCCCCCHhh--HHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 043191 312 AGLMPNVVT--YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385 (414)
Q Consensus 312 ~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 385 (414)
. -+... -..|+.-+...++.-+|-+ +..+-... ....+.-|++...+++|.++....
T Consensus 994 ~---~de~~~~a~~L~s~L~e~~kh~eAa~------il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 994 G---KDELVILAEELVSRLVEQRKHYEAAK------ILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred C---HHHHHHHHHHHHHHHHHcccchhHHH------HHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 2 12222 2556677777777777666 55554432 112233455555566666554433
No 277
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.88 E-value=3.6 Score=35.44 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=22.3
Q ss_pred ChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhh
Q 043191 298 KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339 (414)
Q Consensus 298 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 339 (414)
++++++.++..=++.|+.||..+++.+|+.+.+.+++.+|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~ 156 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAAS 156 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHH
Confidence 344455555544555555555555555555555555555444
No 278
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.87 E-value=2.4 Score=29.32 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 043191 109 VLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152 (414)
Q Consensus 109 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 152 (414)
+.+-++.+....+.|+.....+.+++|-+.+++..|..+++..+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
No 279
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.50 E-value=9.2 Score=31.83 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCC---CCCCHhhHHHHHHHHHhcCChhhhhh
Q 043191 286 FLCLIDGLCKISKLKIARELFQSLPRAG---LMPNVVTYNILIRGLCNDGQMDETKH 339 (414)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~ 339 (414)
|.+.|-.|....++..|...++.--+.+ -.-+..+...|+.+|- .|+.+++..
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~k 248 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK 248 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence 4455666677788899999998743322 2235667777887774 466655444
No 280
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.48 E-value=5.7 Score=29.41 Aligned_cols=92 Identities=16% Similarity=0.064 Sum_probs=69.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHH---HHHHhcC
Q 043191 98 GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI---KDLCAES 174 (414)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g 174 (414)
-+++..|+.+.|++.|.+....- +-....||.-..++.-.|+.++|+.=+++.++..-..+...+.+.+ ..|-..|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 35678999999999999977552 2377889999999999999999999999888753233433333332 3466788
Q ss_pred CHHHHHHHHHHHHHcC
Q 043191 175 RIMEAAALFTKLRVFG 190 (414)
Q Consensus 175 ~~~~a~~~~~~m~~~g 190 (414)
+-+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 9999998888887766
No 281
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.47 E-value=2.6 Score=33.85 Aligned_cols=78 Identities=15% Similarity=0.070 Sum_probs=60.8
Q ss_pred HHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC---CCCCCHHHHHHHHHHH
Q 043191 328 LCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS---CFTPDAVTFTSLIKIL 404 (414)
Q Consensus 328 ~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~ 404 (414)
..+.|+ +.|.+ .|-.+...+..-++.....|...|. ..+.+++..++.+.++. +-.+|+..+.+|+..+
T Consensus 117 Wsr~~d-~~A~~------~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 117 WSRFGD-QEALR------RFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIY 188 (203)
T ss_pred hhccCc-HHHHH------HHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 455565 45555 7888888776667777776666555 78899999999988764 4478999999999999
Q ss_pred HHcCCcccc
Q 043191 405 EINSFFRQV 413 (414)
Q Consensus 405 ~~~g~~~~a 413 (414)
.+.|+++.|
T Consensus 189 ~~~~~~e~A 197 (203)
T PF11207_consen 189 QKLKNYEQA 197 (203)
T ss_pred HHhcchhhh
Confidence 999999876
No 282
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.96 E-value=0.75 Score=24.63 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 360 YTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 360 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4688888999999999999999999987
No 283
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.84 E-value=27 Score=36.18 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=21.9
Q ss_pred CCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 043191 157 TPDAVTFTSLIKDLCAES--RIMEAAALFTKLRV 188 (414)
Q Consensus 157 ~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~ 188 (414)
.|+ ...-.+|.+|++.+ .+++|+....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 455 44556778888887 77777777777764
No 284
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.75 E-value=12 Score=32.10 Aligned_cols=146 Identities=16% Similarity=0.096 Sum_probs=96.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 175 (414)
-.......|++.+|..+|.......- -+...--.+..+|...|+.+.|..++..+-..--.........-|..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 34456678999999999998876532 24566677889999999999999999887554222222223334555666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhh
Q 043191 176 IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249 (414)
Q Consensus 176 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~ 249 (414)
..+...+-.+.-.. +-|...--.+...+...|+.+.|++.+-.+..... -.-|...-..++..+.--
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~-----~~~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDR-----GFEDGEARKTLLELFEAF 285 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-----cccCcHHHHHHHHHHHhc
Confidence 66555555555443 33667777788889999999999998877776542 233444445555555443
No 285
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.31 E-value=1.2 Score=23.78 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 196 FTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 196 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.+|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4567777788888888888888888776
No 286
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.29 E-value=2.2 Score=36.64 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=27.0
Q ss_pred CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043191 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 187 (414)
+.++++.++..=++-|+-||..+++.+|+.+.+.+++.+|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555555555666666666666666666666655555544443
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.82 E-value=0.66 Score=25.10 Aligned_cols=20 Identities=30% Similarity=0.222 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhcCChHHH
Q 043191 195 VFTYNTLINGLCRTGHTIVA 214 (414)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~a 214 (414)
..+|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444433
No 288
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.57 E-value=10 Score=29.69 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043191 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216 (414)
Q Consensus 181 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 216 (414)
++++.+.+.+++|+...|..++..+.+.|++....+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 344444555666666666666666666665544333
No 289
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.56 E-value=47 Score=37.33 Aligned_cols=145 Identities=11% Similarity=0.045 Sum_probs=74.5
Q ss_pred CCCHHhHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 67 SITPNEALCVFDYMLNMRPSRP-PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
++.+.+|+..++.-.......- ....|-.+...|+.-++++...-+...-.. +...+. -|-.....|++..|.
T Consensus 1396 c~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~~g~~~da~ 1469 (2382)
T KOG0890|consen 1396 CKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEASGNWADAA 1469 (2382)
T ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHhhccHHHHH
Confidence 3455667766666311111011 122233344477777777776666553111 112222 334455667777777
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHH
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTY-NTLINGLCRTGHTIVALNLFE 219 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~a~~~~~ 219 (414)
..|+.+.+.+ ++...+++.+++.....|.++.+.-..+-..... .+....+ +.=+.+--+.++++.......
T Consensus 1470 ~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1470 ACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 7777777664 3345666666666666677766666555444321 1222222 222344456666666655544
No 290
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.46 E-value=12 Score=36.97 Aligned_cols=118 Identities=15% Similarity=0.161 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH----HHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043191 93 FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILIN----CFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168 (414)
Q Consensus 93 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 168 (414)
...-|..+.+...++-|+.+-+. .+. +..+...+.. -+.+.|++++|...|-+-+.. +.| ..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 34556666777777777776543 222 3333333433 345678888888777665543 233 23566
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043191 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 222 (414)
-|.......+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+...
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 677777788888888888888864 66667888999999999888777766655
No 291
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.25 E-value=8 Score=31.16 Aligned_cols=79 Identities=8% Similarity=-0.023 Sum_probs=46.6
Q ss_pred HHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCh
Q 043191 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF---GCELDVFTYNTLINGLCRTGHT 211 (414)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~ 211 (414)
+.+.|+ +.|.+.|-++...+.--++...-.|...|. ..+.+++..++-+..+. +-.+|...+..|.+.+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444444 556666666666654444544555544444 45666666666665542 2245667777777777777777
Q ss_pred HHHH
Q 043191 212 IVAL 215 (414)
Q Consensus 212 ~~a~ 215 (414)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 6663
No 292
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.15 E-value=19 Score=32.30 Aligned_cols=295 Identities=13% Similarity=0.043 Sum_probs=176.4
Q ss_pred hhhcCCCCC--CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCCCHhh--HHH
Q 043191 57 CKSSGEGDI--TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCL--AKTKHYDTVLSLFKRLNLTGLFPDRYT--YNI 130 (414)
Q Consensus 57 ~~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ 130 (414)
+++...|++ -.|+-..|.++-.+..+.- ..|....-.|+.+. .-.|+++.|.+-|+-|... |.... ...
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~ll--ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLL--SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhh--hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 444445554 4567777877766654321 24444444555443 3479999999999999864 33222 223
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHHh
Q 043191 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG-CELDVF--TYNTLINGLCR 207 (414)
Q Consensus 131 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~--~~~~li~~~~~ 207 (414)
|.-..-+.|..+.|.+.-+..-..- +.-...+.+.+...|..|+|+.|+++++.-+... +.++.. .-..|+.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 3333457788888888877776553 3345778899999999999999999999876643 344432 22233332221
Q ss_pred ---cCChHHHHHHHHHHHcCCCCCCccccCchhhHHHH-HHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhccc
Q 043191 208 ---TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI-IDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQCL 282 (414)
Q Consensus 208 ---~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~l-i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~ 282 (414)
.-+...|...-.+..+ +.||.+--..+ ..++. ..|+..++..+++ +-+..|.
T Consensus 239 s~ldadp~~Ar~~A~~a~K--------L~pdlvPaav~AAralf---------------~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 239 SLLDADPASARDDALEANK--------LAPDLVPAAVVAARALF---------------RDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--------cCCccchHHHHHHHHHH---------------hccchhhhhhHHHHHHhcCCC
Confidence 2345556555555544 55665432222 12233 3477777777777 5555555
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHhchhC-CCCC-CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHH
Q 043191 283 CLNFLCLIDGLCKISKLKIARELFQSLPRA-GLMP-NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLY 360 (414)
Q Consensus 283 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~ 360 (414)
+..+.. ..+.+.|+ .++.-+++.... ..+| +..+--.+..+-...|++..|.. --+.... ..|...
T Consensus 296 P~ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa------~Aeaa~r--~~pres 363 (531)
T COG3898 296 PDIALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA------KAEAAAR--EAPRES 363 (531)
T ss_pred hHHHHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH------HHHHHhh--hCchhh
Confidence 544432 22344444 333333332211 1233 55677778888889999988876 4444333 357777
Q ss_pred HHHHHHHHH-HhcCCHHHHHHHHHhhhhCCCCC
Q 043191 361 TYNILINCF-CKIGRVSSGFVIFGRILPSCFTP 392 (414)
Q Consensus 361 ~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p 392 (414)
.|-.|.+.- ...||-.++...+.+.++.--.|
T Consensus 364 ~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 364 AYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 777776654 44599999999999888753333
No 293
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.13 E-value=1.5 Score=24.61 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043191 162 TFTSLIKDLCAESRIMEAAALFTKLR 187 (414)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~ 187 (414)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555555555555555555543
No 294
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.08 E-value=19 Score=32.21 Aligned_cols=66 Identities=9% Similarity=0.001 Sum_probs=49.9
Q ss_pred CCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP---DLYTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 316 p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
....+|..+...+.+.|.++.|.. .+..+...+... .+...-.-.+.....|+..+|+..+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~------~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALS------ALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHH------HHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356688899999999999999988 888887743211 334444445667788999999999988887
No 295
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.95 E-value=1.2 Score=23.61 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 360 YTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 360 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
..|..+...+...|++++|++.|++.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45677888999999999999999998873
No 296
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.83 E-value=15 Score=30.68 Aligned_cols=87 Identities=10% Similarity=0.065 Sum_probs=51.2
Q ss_pred HHHHHHhcCChhHHHHHHHhchh----CCCCCCH-hhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCC---CCCHH
Q 043191 289 LIDGLCKISKLKIARELFQSLPR----AGLMPNV-VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL---FPDLY 360 (414)
Q Consensus 289 li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~---~p~~~ 360 (414)
.-..+.+..++++|-..+.+-.. ..-.++. ..|...|-.+.-..++..|.. .++.--+.+- .-+..
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aek------c~r~~~qip~f~~sed~r 229 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEK------CYRDCSQIPAFLKSEDSR 229 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHH------HhcchhcCccccChHHHH
Confidence 34455566666666555543221 1111222 335566667777778888877 7877554321 22466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 043191 361 TYNILINCFCKIGRVSSGFVIF 382 (414)
Q Consensus 361 ~~~~li~~~~~~g~~~~a~~~~ 382 (414)
+...|+.+| ..||.+++..++
T Consensus 230 ~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 230 SLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHh-ccCCHHHHHHHH
Confidence 788888877 478888777664
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.53 E-value=11 Score=29.07 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=28.9
Q ss_pred HHhcCChhHHHHHHHhchhCCCCCCHhhHH-HHHHHHHhcCChhhhhhhhhHHHHHHHHHhC
Q 043191 293 LCKISKLKIARELFQSLPRAGLMPNVVTYN-ILIRGLCNDGQMDETKHYETVFLLFKRLNST 353 (414)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~ 353 (414)
-.+.++.+++..++..+.-. +|...... .-..-+...|++.+|.+ +|+++.+.
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~r------lLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALR------LLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHH------HHHHHhcc
Confidence 34556677777777766553 23222211 11223556677777666 77776654
No 298
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.48 E-value=0.3 Score=37.26 Aligned_cols=84 Identities=10% Similarity=0.086 Sum_probs=38.6
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 043191 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211 (414)
Q Consensus 132 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 211 (414)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcchH
Confidence 4444444555555555555554443344555555555555555545555554411 111122344444555555
Q ss_pred HHHHHHHHHHH
Q 043191 212 IVALNLFEEMA 222 (414)
Q Consensus 212 ~~a~~~~~~m~ 222 (414)
++|.-++..+.
T Consensus 87 ~~a~~Ly~~~~ 97 (143)
T PF00637_consen 87 EEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHcc
Confidence 55555554443
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.97 E-value=2 Score=22.71 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 197 TYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 197 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677777888888888888887776
No 300
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.86 E-value=1.7 Score=24.34 Aligned_cols=29 Identities=31% Similarity=0.313 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 195 VFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45788999999999999999999999875
No 301
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.79 E-value=8.8 Score=26.98 Aligned_cols=43 Identities=7% Similarity=0.114 Sum_probs=20.7
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV 188 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (414)
+-++.+....+.|++.+..+.+++|-+.+++..|..+|+-++.
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334444445555555555555555555555555555555544
No 302
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.78 E-value=27 Score=32.60 Aligned_cols=133 Identities=14% Similarity=0.165 Sum_probs=87.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (414)
.|....-+++..+..+..+.-+..+..+|..-| -+...|..++.+|... ..+.-..+|+++.+..+. |++.-.-|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 566677788999999999999999999998775 3677888899999888 446677788877776532 333333333
Q ss_pred HHHHhcCCHHHHHHHHHHH--------------------HH-------------------cCCCCCHHHHHHHHHHHHhc
Q 043191 168 KDLCAESRIMEAAALFTKL--------------------RV-------------------FGCELDVFTYNTLINGLCRT 208 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m--------------------~~-------------------~g~~~~~~~~~~li~~~~~~ 208 (414)
..|-+ ++.+.+..+|.+. .+ .|...-.+.+.-+-.-|...
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 33333 4444444433333 21 12122234444555667778
Q ss_pred CChHHHHHHHHHHHcCC
Q 043191 209 GHTIVALNLFEEMANGN 225 (414)
Q Consensus 209 g~~~~a~~~~~~m~~~~ 225 (414)
.++++|++++..+.+..
T Consensus 219 eN~~eai~Ilk~il~~d 235 (711)
T COG1747 219 ENWTEAIRILKHILEHD 235 (711)
T ss_pred cCHHHHHHHHHHHhhhc
Confidence 89999999999877655
No 303
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.08 E-value=0.36 Score=36.87 Aligned_cols=115 Identities=14% Similarity=0.116 Sum_probs=58.3
Q ss_pred HHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCH--------H
Q 043191 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL--------Y 360 (414)
Q Consensus 289 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~--------~ 360 (414)
+|..+.+.+.++....+++.+...+..-+....+.++..|++.++.++... +++... +..++. .
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~------~L~~~~--~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLE------FLKTSN--NYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHH------TTTSSS--SS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHH------Hccccc--ccCHHHHHHHHHhcc
Confidence 445555556666666666666655544456666777777777766555444 232100 011100 0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhhC-------CCCCCHHHHHHHHHHHHHcCCcc
Q 043191 361 TYNILINCFCKIGRVSSGFVIFGRILPS-------CFTPDAVTFTSLIKILEINSFFR 411 (414)
Q Consensus 361 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~ 411 (414)
.|...+-.|.+.|++++|.+++..+... .-..+...|..++..|...+...
T Consensus 85 l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~~~ 142 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKPFN 142 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTCTC
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCccc
Confidence 1223333444555555554432221110 01256889999999988777653
No 304
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.03 E-value=11 Score=28.70 Aligned_cols=81 Identities=14% Similarity=0.312 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC---C--CCCHhhHHHHHHHHHhcCC-cchHHHHHHHHHHcCCCCCHHhHHHH
Q 043191 93 FNILFGCLAKTKHYDTVLSLFKRLNLTG---L--FPDRYTYNILINCFCKMGR-VSHGFVVLGRILRSCFTPDAVTFTSL 166 (414)
Q Consensus 93 ~~~li~~~~~~~~~~~a~~~~~~m~~~g---~--~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (414)
.|.++...+..+.+.-.+.+++.+..-. + ..+...|..++.+.++..- ---+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3566666666666666666555553210 0 1233445555555544433 22344555555555555555555555
Q ss_pred HHHHHhc
Q 043191 167 IKDLCAE 173 (414)
Q Consensus 167 i~~~~~~ 173 (414)
|.++.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 5554443
No 305
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.70 E-value=38 Score=33.29 Aligned_cols=187 Identities=10% Similarity=0.082 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhCCCCC---CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCC------CCH-HhHHHHHHHHHhcCCHH
Q 043191 108 TVLSLFKRLNLTGLFP---DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT------PDA-VTFTSLIKDLCAESRIM 177 (414)
Q Consensus 108 ~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~-~~~~~li~~~~~~g~~~ 177 (414)
+-...+.+|..+=-.| ...+...++-.|....+++...++.+.+++..-. ++. ..|...++---+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 3345566666542233 3445566666676777777777777777653100 010 11333333334457777
Q ss_pred HHHHHHHHHHHcC--CCCCHH-----HHHHH--HHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchh---hHHHHHHH
Q 043191 178 EAAALFTKLRVFG--CELDVF-----TYNTL--INGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI---TYSTIIDG 245 (414)
Q Consensus 178 ~a~~~~~~m~~~g--~~~~~~-----~~~~l--i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~---~~~~li~~ 245 (414)
+|+.+.-.+.+.. +.||.. +|.-+ -+.|...+..+.|.+.|++.-+ +.|+.. -+..|+.+
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--------veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--------VEPLEYSGINLATLLRA 332 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--------cCchhhccccHHHHHHH
Confidence 7777766665532 455543 22221 2334556677889999988877 556543 34555554
Q ss_pred HHhhcCCCc-----hhHHHHHh-hccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhC
Q 043191 246 LCKEAGSAN-----FLGFSCMA-SFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312 (414)
Q Consensus 246 ~~~~~~~~~-----~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 312 (414)
-.+.-.... ....++++ +.|.+++....++. ...+.+-.-.+++.+|.+.-+.|-+.
T Consensus 333 aG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 333 AGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred hhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 433211110 01112222 45555555555441 12334444456777777776666554
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.66 E-value=14 Score=28.19 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=36.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 171 CAESRIMEAAALFTKLRVFGCELD---VFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 171 ~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
...++.+++..+++.|.-. .|+ ..++...+ +...|+|++|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 3478888888888888754 343 33444443 567899999999999988755
No 307
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.38 E-value=12 Score=31.74 Aligned_cols=90 Identities=13% Similarity=0.052 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-
Q 043191 94 NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA- 172 (414)
Q Consensus 94 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~- 172 (414)
-.=|++++..++|.+++.+.-+--+..-+--..+...-|-.|.+.+.+..+.++-..-....-..+...|.+++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 3456788888999888877655432211222344455566688888888888888777765333444557777766655
Q ss_pred ----cCCHHHHHHHH
Q 043191 173 ----ESRIMEAAALF 183 (414)
Q Consensus 173 ----~g~~~~a~~~~ 183 (414)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 58888888876
No 308
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.09 E-value=3.2 Score=33.73 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=40.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT--GLFPDRYTYNILINC 134 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~ 134 (414)
++.++..+|+...+.-.+..| .|...-..+++.++-.|+|++|..-++..-.. ...+-..+|..+|.+
T Consensus 12 L~~~sL~dai~~a~~qVkakP--tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 12 LDDNSLQDAIGLARDQVKAKP--TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHhccHHHHHHHHHHHHhcCC--ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344666777777666666554 45555666777777777777777666654432 223344556666554
No 309
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.97 E-value=28 Score=31.11 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=35.8
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHhchhCCCCC---CHhhHHHHHHHHHhcCChhhhhh
Q 043191 283 CLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP---NVVTYNILIRGLCNDGQMDETKH 339 (414)
Q Consensus 283 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~ 339 (414)
..+|..++..+.+.|+++.|...+..+...+... ++...-.-...+-..|+..+|..
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~ 205 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQ 205 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHH
Confidence 3456667778888888888888888776643211 23334444555666677666666
No 310
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.91 E-value=22 Score=30.36 Aligned_cols=87 Identities=11% Similarity=-0.037 Sum_probs=48.9
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 043191 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR---- 207 (414)
Q Consensus 132 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---- 207 (414)
|.+++..++|.+++...-+.-+.--+....+...-|-.|.+.++...+.++-..-....-.-+..-|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 6677777777777766555544322233344555555677777777666665554432212233346655554443
Q ss_pred -cCChHHHHHHH
Q 043191 208 -TGHTIVALNLF 218 (414)
Q Consensus 208 -~g~~~~a~~~~ 218 (414)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46667766665
No 311
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.49 E-value=7.5 Score=28.50 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=46.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHH
Q 043191 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403 (414)
Q Consensus 346 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 403 (414)
.++.+....+.|++.....-+++|.+.+|+..|.++|+-+..+ +.+....|-.+++-
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 6777777889999999999999999999999999999988765 44444456665543
No 312
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.14 E-value=16 Score=27.74 Aligned_cols=100 Identities=18% Similarity=0.125 Sum_probs=73.0
Q ss_pred HHHHhCCCCCCHhh--HHHHHHHHHhcCCcchHHHHHHHHHHcC-----CCCCHHhHHHHHHHHHhcCC-HHHHHHHHHH
Q 043191 114 KRLNLTGLFPDRYT--YNILINCFCKMGRVSHGFVVLGRILRSC-----FTPDAVTFTSLIKDLCAESR-IMEAAALFTK 185 (414)
Q Consensus 114 ~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~ 185 (414)
..|.+.+..++..+ .+.++.-.+..+++...+++++.+.... -..+...|++++.+.++..- ---+..+|.-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 34555555555433 5778887788888888888888774421 03466779999999977766 4456788999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 043191 186 LRVFGCELDVFTYNTLINGLCRTGHTIV 213 (414)
Q Consensus 186 m~~~g~~~~~~~~~~li~~~~~~g~~~~ 213 (414)
|++.+.+.+..-|..+|.++.+....+.
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 9988889999999999999877644443
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.95 E-value=16 Score=34.74 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=59.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 043191 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA 179 (414)
Q Consensus 100 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 179 (414)
..+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|..... |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 345666666666654432 445577777777777777777776665543 33555566666666655
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043191 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221 (414)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 221 (414)
..+-...++.|. .|. -..+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g~-~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGK-NNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcc-cch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 555555555552 222 123344567777776666554
No 314
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.72 E-value=44 Score=32.35 Aligned_cols=148 Identities=12% Similarity=0.061 Sum_probs=95.6
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHhhHHHHHHH-----HHhcCChhHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHH
Q 043191 69 TPNEALCVFDYMLNMRPSRPPVTSFNILFGC-----LAKTKHYDTVLSLFKRLNL-------TGLFPDRYTYNILINCFC 136 (414)
Q Consensus 69 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~ 136 (414)
....|.+.++.....+. +.....+..+ +....+++.|+.+|+...+ .| +.....-+..+|.
T Consensus 227 ~~~~a~~~~~~~a~~g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYL 299 (552)
T ss_pred hhhHHHHHHHHHHhhcc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHh
Confidence 35788888888877654 3333333333 3356789999999999876 44 3335556777776
Q ss_pred hcC-----CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hc
Q 043191 137 KMG-----RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA-ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC--RT 208 (414)
Q Consensus 137 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~ 208 (414)
+.. +.+.|..++...-+.| .|+....-..+..... ..+...|.++|...-..|. +...-+-+++.... -.
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVE 377 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcC
Confidence 643 5566899998888887 4565555444444333 3567899999999988884 33333333332222 23
Q ss_pred CChHHHHHHHHHHHcCC
Q 043191 209 GHTIVALNLFEEMANGN 225 (414)
Q Consensus 209 g~~~~a~~~~~~m~~~~ 225 (414)
.+...|..+++...+.|
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 46788888888888776
No 315
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.43 E-value=55 Score=33.28 Aligned_cols=117 Identities=11% Similarity=0.002 Sum_probs=68.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHhcCCc--chHHHHHHHHHHcCCCCCHHhHH--
Q 043191 92 SFNILFGCLAKTKHYDTVLSLFKRLNLTG---LFPDRYTYNILINCFCKMGRV--SHGFVVLGRILRSCFTPDAVTFT-- 164 (414)
Q Consensus 92 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 164 (414)
-|..|+..|...|+.++|+++|.+..... ..--..-+..++.-..+.+.. +..++.-.+..+....-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 37788889999999999999999887531 111122233455555555543 45555544444432111111111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043191 165 ----------SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208 (414)
Q Consensus 165 ----------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 208 (414)
..+-.|......+-+..+++.+....-..+....+.++.-|++.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 12334566677777888888887665456677777777777653
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.28 E-value=13 Score=32.58 Aligned_cols=108 Identities=13% Similarity=0.019 Sum_probs=68.3
Q ss_pred hHHHHHHHH--hhhcCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 043191 48 SLEQFLKER--CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR 125 (414)
Q Consensus 48 ~l~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 125 (414)
.+++++... .+.....+++.|++++|++.+.......| .+.+.+..-..+|.+...+..|..-.+.....+ ..=.
T Consensus 89 I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P--~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~ 165 (536)
T KOG4648|consen 89 IAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYP--HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYV 165 (536)
T ss_pred HHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCC--CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHH
Confidence 344444433 24556788999999999999998887765 577888888888999888887776655544321 0011
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH
Q 043191 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 160 (414)
Q Consensus 126 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (414)
..|..-+.+--..|+..+|.+-++..++. .|+.
T Consensus 166 KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L--EP~~ 198 (536)
T KOG4648|consen 166 KAYSRRMQARESLGNNMEAKKDCETVLAL--EPKN 198 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHhh--Cccc
Confidence 23333344444445666666666665554 5553
No 317
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.72 E-value=3.4 Score=21.89 Aligned_cols=27 Identities=26% Similarity=0.237 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 197 TYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 197 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666677777777777777776655
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.65 E-value=1.6 Score=22.88 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=13.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLT 119 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~ 119 (414)
+..++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444455555566666665555543
No 319
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.45 E-value=3 Score=24.15 Aligned_cols=27 Identities=7% Similarity=0.193 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 043191 364 ILINCFCKIGRVSSGFVIFGRILPSCF 390 (414)
Q Consensus 364 ~li~~~~~~g~~~~a~~~~~~m~~~g~ 390 (414)
.+..+|...|+.+.|.+++++.+..|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 367899999999999999999997653
No 320
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=82.43 E-value=32 Score=29.80 Aligned_cols=72 Identities=10% Similarity=0.165 Sum_probs=40.1
Q ss_pred HHHhcCCHHHHHHHH-HHHHHcCCCCCHH----HHHHHHHHHHhcCChHH-----HHHHHHHHHcCCCCCCccccCchhh
Q 043191 169 DLCAESRIMEAAALF-TKLRVFGCELDVF----TYNTLINGLCRTGHTIV-----ALNLFEEMANGNGEFGVVCEPDAIT 238 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~-~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~-----a~~~~~~m~~~~~~~~~~~~p~~~~ 238 (414)
-..+...+++..... ++|+...+ |+.. .|..+|++ .+|.+ |.+.++++ .+
T Consensus 264 q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsa----veWnKkeelva~qalrhl---------------K~ 323 (412)
T KOG2297|consen 264 QVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSA----VEWNKKEELVAEQALRHL---------------KQ 323 (412)
T ss_pred HhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHH----HhhchHHHHHHHHHHHHH---------------Hh
Confidence 334444556655544 45666664 4543 56666654 33333 33333333 46
Q ss_pred HHHHHHHHHhhcCCCchhHHHH
Q 043191 239 YSTIIDGLCKEAGSANFLGFSC 260 (414)
Q Consensus 239 ~~~li~~~~~~~~~~~~~~~~~ 260 (414)
|..|+.++|..|+.+-.+.+..
T Consensus 324 yaPLL~af~s~g~sEL~Ll~Kv 345 (412)
T KOG2297|consen 324 YAPLLAAFCSQGQSELELLLKV 345 (412)
T ss_pred hhHHHHHHhcCChHHHHHHHHH
Confidence 8889999999877554444433
No 321
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=82.29 E-value=36 Score=30.32 Aligned_cols=158 Identities=14% Similarity=-0.002 Sum_probs=88.1
Q ss_pred CCCCHHhHHHHHHHHHhcCC-CCCCHhhHHHHHHHHHhcCChhHHHHHH-HHH---HhCCC-CCCHhhHHHHHHHHHhcC
Q 043191 66 TSITPNEALCVFDYMLNMRP-SRPPVTSFNILFGCLAKTKHYDTVLSLF-KRL---NLTGL-FPDRYTYNILINCFCKMG 139 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~-~~m---~~~g~-~p~~~~~~~li~~~~~~~ 139 (414)
...+.++|+..+.....+-. ...-..+|..+..+.++.|.+++++..- ..| .+..- .---+.|..+-+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666665555443211 0112335666777788888877765431 112 11100 001234555555665555
Q ss_pred CcchHHHHHHHHHHc-CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCC
Q 043191 140 RVSHGFVVLGRILRS-CFTP---DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE-----LDVFTYNTLINGLCRTGH 210 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~~~li~~~~~~g~ 210 (414)
++.+++.+-..-... |..| --....++-.++...+.++++++.|+.....-.. ....+|-.|...|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 666666655554432 2222 1123445666777788899999999876553211 123578888888999999
Q ss_pred hHHHHHHHHHHHc
Q 043191 211 TIVALNLFEEMAN 223 (414)
Q Consensus 211 ~~~a~~~~~~m~~ 223 (414)
+++|.-......+
T Consensus 178 ~~Kal~f~~kA~~ 190 (518)
T KOG1941|consen 178 YEKALFFPCKAAE 190 (518)
T ss_pred hhHHhhhhHhHHH
Confidence 9888776655443
No 322
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.77 E-value=14 Score=31.71 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043191 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221 (414)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 221 (414)
+++...+.|..+|.+.+|.++.++..... +.+...|-.++..+...|+--.|.+-++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 45566677888888888888888877665 567777888888888888855555555444
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.70 E-value=15 Score=30.03 Aligned_cols=58 Identities=14% Similarity=0.054 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043191 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187 (414)
Q Consensus 129 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 187 (414)
+.-++.+.+.+.+.+++...++-++.. +.|..+-..++..||-.|+|++|..-++-.-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 344445555556666665555555443 3344445555566666666666655544443
No 324
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.50 E-value=3.8 Score=23.76 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=18.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 043191 166 LIKDLCAESRIMEAAALFTKLRVFG 190 (414)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~g 190 (414)
|..+|...|+.+.|.++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5677888888888888888777543
No 325
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.42 E-value=3.1 Score=20.69 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh
Q 043191 362 YNILINCFCKIGRVSSGFVIFGR 384 (414)
Q Consensus 362 ~~~li~~~~~~g~~~~a~~~~~~ 384 (414)
...+...+...|++++|..++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhC
Confidence 45567788999999999998764
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.88 E-value=19 Score=28.49 Aligned_cols=97 Identities=9% Similarity=0.044 Sum_probs=44.8
Q ss_pred HHhHHHHHHHHHhcCCCCCCHhh---HHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCC-HhhHHHHHHHHHhcC-
Q 043191 70 PNEALCVFDYMLNMRPSRPPVTS---FNILFGCLAKTKHYDTVLSLFKRLNLT-----GLFPD-RYTYNILINCFCKMG- 139 (414)
Q Consensus 70 ~~~A~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~-~~~~~~li~~~~~~~- 139 (414)
++.|.+..+.-...+| .|... |...+.-+++..+..++.+++++.... .+.|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~nP--~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP--LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc--HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 3566666666666665 44443 344444455555544555555443321 23565 355655666655433
Q ss_pred ---C-------cchHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043191 140 ---R-------VSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170 (414)
Q Consensus 140 ---~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 170 (414)
+ +++|...|++.... .|+...|+.-+...
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 2 23333333333332 56666666655554
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.76 E-value=26 Score=33.37 Aligned_cols=101 Identities=9% Similarity=-0.048 Sum_probs=70.6
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 043191 64 DITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143 (414)
Q Consensus 64 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 143 (414)
.++.|+.+.|.++..+. .+..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+-+.
T Consensus 647 al~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhcCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 35667777777765543 6677788888888888988888888876542 4567777777887766
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043191 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 186 (414)
...+-....+.| +. |....+|-..|+++++.+++.+-
T Consensus 711 l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 711 LAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 666666666665 22 33444666778888888877654
No 328
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.71 E-value=62 Score=31.37 Aligned_cols=158 Identities=14% Similarity=0.019 Sum_probs=100.5
Q ss_pred CCCCCCHHhHHHHHHHHHhc---CCCCCCHhhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043191 64 DITSITPNEALCVFDYMLNM---RPSRPPVTSFNILFGCLAKTK-----HYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135 (414)
Q Consensus 64 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 135 (414)
.....+++.|+..|..+... ...+-...+.+-+..+|.+.. +.+.|..++.+.-+.| .|+...+-..+...
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYET 337 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHc
Confidence 55778999999999998761 100123446677888887754 5667999999888776 34554443333333
Q ss_pred Hh-cCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 043191 136 CK-MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC--AESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212 (414)
Q Consensus 136 ~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 212 (414)
.. ..+...|.++|...-+.|.. ....+-+++-... -..+.+.|..++.+..+.| .|...--...+..+.. +.++
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 23 24678999999999998843 3333333322222 3457889999999999888 3333322333444444 7777
Q ss_pred HHHHHHHHHHcCC
Q 043191 213 VALNLFEEMANGN 225 (414)
Q Consensus 213 ~a~~~~~~m~~~~ 225 (414)
.+.-.+..+.+.+
T Consensus 415 ~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 415 TALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777777655
No 329
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=79.46 E-value=37 Score=28.64 Aligned_cols=50 Identities=16% Similarity=0.053 Sum_probs=29.5
Q ss_pred HHHHHHhcCChhHHHHHHHhchhCCCCCC---HhhHHHHHHHHHhcCChhhhhh
Q 043191 289 LIDGLCKISKLKIARELFQSLPRAGLMPN---VVTYNILIRGLCNDGQMDETKH 339 (414)
Q Consensus 289 li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~ 339 (414)
+.+-|.+.|.+..|..-+++|.+. ..-+ ...+-.+..+|...|-.++|..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHH
Confidence 455667777777777777777665 2112 2234445566666666666655
No 330
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.05 E-value=20 Score=25.24 Aligned_cols=77 Identities=22% Similarity=0.215 Sum_probs=43.8
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHhhHHHHH--HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 043191 69 TPNEALCVFDYMLNMRPSRPPVTSFNILF--GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146 (414)
Q Consensus 69 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 146 (414)
+.++|..+-+++...+. ..-...|| ..+...|++++|..+.+.+. .||...|-.|-. .+.|..+....
T Consensus 20 cHqEA~tIAdwL~~~~~----~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~ 89 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE----SEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALES 89 (115)
T ss_pred HHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHH
Confidence 44677777777654331 12223333 34556777777777766552 567776665543 35555555555
Q ss_pred HHHHHHHcC
Q 043191 147 VLGRILRSC 155 (414)
Q Consensus 147 ~~~~~~~~~ 155 (414)
-+.+|..+|
T Consensus 90 rl~rla~sg 98 (115)
T TIGR02508 90 RLNRLAASG 98 (115)
T ss_pred HHHHHHhCC
Confidence 566666655
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.34 E-value=6.1 Score=20.83 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 360 YTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 360 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
.+|..+...|...|++++|...|++.++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567788889999999999999998876
No 332
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.28 E-value=19 Score=28.49 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=50.4
Q ss_pred HHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC----C-------hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 043191 70 PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK----H-------YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138 (414)
Q Consensus 70 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 138 (414)
+++|+.-|+.....+| ....++..+..++...+ + +++|.+.|++.... .|+..+|+.-+....
T Consensus 51 iedAisK~eeAL~I~P--~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKINP--NKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH--
Confidence 4778888888888876 44455666666665433 2 45566666665544 799999998888773
Q ss_pred CCcchHHHHHHHHHHcCCC
Q 043191 139 GRVSHGFVVLGRILRSCFT 157 (414)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~ 157 (414)
+|-+++.++.+.+..
T Consensus 125 ----kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 125 ----KAPELHMEIHKQGLG 139 (186)
T ss_dssp ----THHHHHHHHHHSSS-
T ss_pred ----hhHHHHHHHHHHHhh
Confidence 477888888777543
No 333
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.11 E-value=21 Score=25.09 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=31.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 168 KDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
..+.+.|++++|..+.+.+ ..||...|-+|.. .+.|..+++..-+..|..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3455666777776666555 2566666665544 35566666666666666655
No 334
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=77.95 E-value=35 Score=27.55 Aligned_cols=157 Identities=19% Similarity=0.057 Sum_probs=99.8
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCcchHHH
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDRYTYNILINCFCKMGRVSHGFV 146 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~ 146 (414)
+....+...+...............+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445566666666554431113567777778888888888888888776642 223355566667777777778888888
Q ss_pred HHHHHHHcCCCCCHHhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 147 VLGRILRSCFTPDAVTFTSLIK-DLCAESRIMEAAALFTKLRVFGC--ELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888887654332 222222233 67888888888888888755211 12333444444446677788888888888876
Q ss_pred CC
Q 043191 224 GN 225 (414)
Q Consensus 224 ~~ 225 (414)
..
T Consensus 196 ~~ 197 (291)
T COG0457 196 LN 197 (291)
T ss_pred hC
Confidence 43
No 335
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=77.67 E-value=23 Score=25.25 Aligned_cols=79 Identities=20% Similarity=0.156 Sum_probs=31.5
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHH
Q 043191 69 TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148 (414)
Q Consensus 69 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 148 (414)
+.++|..+.+++...+. -...+--.-+..+.+.|++++| ++. ....-.||...|-+|- -.+.|--+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A--Ll~--~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA--LLL--PQCHCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH--HHH--HTTS--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH--HHh--cccCCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 34566666666655432 1111112222334555666665 111 1112245555554432 23455555555555
Q ss_pred HHHHHcC
Q 043191 149 GRILRSC 155 (414)
Q Consensus 149 ~~~~~~~ 155 (414)
.++-.+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 5444443
No 336
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.57 E-value=65 Score=29.95 Aligned_cols=118 Identities=9% Similarity=0.048 Sum_probs=77.9
Q ss_pred CCCHHhHH-HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 67 SITPNEAL-CVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 67 ~~~~~~A~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
.|+.-.|- ++|+.+..... .|+.... ....+...|+++.+...+...... +.....+...+++...+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~-~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQ-DPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCC-CchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 35555544 45555554433 4544433 334457789999999888766533 2345677888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
.+-+-|+...+. +...........-..|-++++.-.++++...
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 999998887655 4444443333444567788888888877543
No 337
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=76.37 E-value=11 Score=22.36 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=29.6
Q ss_pred HHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHH
Q 043191 369 FCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403 (414)
Q Consensus 369 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 403 (414)
..+.|-.+++..++++|.+.|+..+...+..++.-
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 45678888999999999999999999998887753
No 338
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.01 E-value=32 Score=33.71 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=18.1
Q ss_pred HHHHHHHHH-----HHHhcCCHHHHHHHHHhhh
Q 043191 359 LYTYNILIN-----CFCKIGRVSSGFVIFGRIL 386 (414)
Q Consensus 359 ~~~~~~li~-----~~~~~g~~~~a~~~~~~m~ 386 (414)
..|+..|+. .+...|+++.|++.++++.
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 345555544 3467899999998877764
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.54 E-value=23 Score=32.74 Aligned_cols=117 Identities=9% Similarity=-0.024 Sum_probs=67.4
Q ss_pred hccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhh
Q 043191 263 SFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHY 340 (414)
Q Consensus 263 ~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 340 (414)
..|++..|.+-.. ..+. +.++.........+...|.++.+.+.+...... +.....+..++++...+.|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s- 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS- 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH-
Confidence 3455544444333 3333 333444333444556677888877777665432 22355667777777778888777766
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 341 ETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 341 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
+-..|....++ +...........-..|-+|++.-.+++...
T Consensus 379 -----~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 379 -----TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred -----HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 66666665554 444444444444556667777777766654
No 340
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.53 E-value=59 Score=27.99 Aligned_cols=125 Identities=16% Similarity=0.094 Sum_probs=66.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhh-------HHHHHHHHHhcCCcchHHHHHHHH----HHcCCCCCHHhHHH
Q 043191 97 FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYT-------YNILINCFCKMGRVSHGFVVLGRI----LRSCFTPDAVTFTS 165 (414)
Q Consensus 97 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ 165 (414)
.+-..+.+++++|+..+.+....|+..|..+ ...+...|...|+...--+..... ..-.-+..+-...+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3444566677777777777776666555433 334566677777655544433222 22111223334455
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043191 166 LIKDLCAE-SRIMEAAALFTKLRVFGCELD-----VFTYNTLINGLCRTGHTIVALNLFEEM 221 (414)
Q Consensus 166 li~~~~~~-g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m 221 (414)
|+..+... ..++..+++.....+....-. ...-.-++..+.+.|.+.+|+.+...+
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55544432 335555555554443211111 112245788889999999998866544
No 341
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=72.86 E-value=53 Score=27.17 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=54.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHhhH--HHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP---DRYTY--NILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (414)
.+...-+|.|+--|.-...+.+|.+.|. .+.|+.| |..++ ..-|......|+.+.|.+....+...-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 3444556666655555555666666664 4445554 33333 245566778888888888877765443333432
Q ss_pred hHHHHHH----HHHhcCCHHHHHHHHHH
Q 043191 162 TFTSLIK----DLCAESRIMEAAALFTK 185 (414)
Q Consensus 162 ~~~~li~----~~~~~g~~~~a~~~~~~ 185 (414)
.+-.|.. =..+.|..++|+++++.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3222222 24566667777776654
No 342
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=72.74 E-value=58 Score=28.90 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043191 107 DTVLSLFKRLNLTGLFPDR----YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171 (414)
Q Consensus 107 ~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 171 (414)
++++.+++++... -|+. .-|-.+.+.....|.++.++.+|+..+..|..|-...-..++..+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3455555555443 3332 2244555555555666666666666666665555555454544443
No 343
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.23 E-value=51 Score=26.76 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=53.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043191 98 GCLAKTKHYDTVLSLFKRLNLTGLFPD------RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171 (414)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 171 (414)
.-+.+.|++++|..-|...... -|. ...|..-..++.+.+.++.|+.--...++.+ +......-.-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 3456677888888777776654 222 2234444456667777777776666666654 112222233344677
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 043191 172 AESRIMEAAALFTKLRVF 189 (414)
Q Consensus 172 ~~g~~~~a~~~~~~m~~~ 189 (414)
+...+++|+.=|..+.+.
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 777777777777777665
No 344
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=71.76 E-value=56 Score=26.95 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHhchhC
Q 043191 284 LNFLCLIDGLCKISKLKIARELFQSLPRA 312 (414)
Q Consensus 284 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 312 (414)
.||--+...+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45666888888999999999999977654
No 345
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.72 E-value=17 Score=21.53 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=14.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 043191 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILI 132 (414)
Q Consensus 102 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 132 (414)
+.|-..++..++++|.+.|+.-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444444555555555555444444444443
No 346
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.35 E-value=1.1e+02 Score=30.36 Aligned_cols=149 Identities=10% Similarity=0.058 Sum_probs=84.0
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
++.+.+++|++.-+.....-+.......+...|..+.-.|++++|-...-.|... +..-|..-+..++..++....
T Consensus 367 l~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchh
Confidence 4556788888877765443221113456788888888899999998888888754 555566666666665554332
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH------------------HHHHcCCCCCHHHHHHHHHHHH
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFT------------------KLRVFGCELDVFTYNTLINGLC 206 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~------------------~m~~~g~~~~~~~~~~li~~~~ 206 (414)
.. -+-...-..+..+|..++..+.. .+...-.++.. +..+. .-+...-..|...|.
T Consensus 443 a~---~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl 516 (846)
T KOG2066|consen 443 AP---YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYL 516 (846)
T ss_pred hc---cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHH
Confidence 21 11111112344556666655555 22221111111 11111 112233444778888
Q ss_pred hcCChHHHHHHHHHHHc
Q 043191 207 RTGHTIVALNLFEEMAN 223 (414)
Q Consensus 207 ~~g~~~~a~~~~~~m~~ 223 (414)
..+++..|+.++-...+
T Consensus 517 ~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 517 YDNKYEKALPIYLKLQD 533 (846)
T ss_pred HccChHHHHHHHHhccC
Confidence 88889988888776654
No 347
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.13 E-value=79 Score=29.14 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=44.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH--hHHHHHHHHHhc
Q 043191 98 GCLAKTKHYDTVLSLFKRLNLTGLFPDRYT--YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV--TFTSLIKDLCAE 173 (414)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~ 173 (414)
...++.|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 334556666444 44455677766433 234555556666654 555666677655532 123345566677
Q ss_pred CCHHHHHHHHH
Q 043191 174 SRIMEAAALFT 184 (414)
Q Consensus 174 g~~~~a~~~~~ 184 (414)
|+.+.+..+++
T Consensus 79 g~~~~v~~Ll~ 89 (413)
T PHA02875 79 GDVKAVEELLD 89 (413)
T ss_pred CCHHHHHHHHH
Confidence 88776555553
No 348
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=71.05 E-value=15 Score=23.19 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 198 YNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 198 ~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.-.+|.+|...|++++|.+.++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33456666666666666666665543
No 349
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.01 E-value=37 Score=29.98 Aligned_cols=93 Identities=9% Similarity=-0.005 Sum_probs=57.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 043191 97 FGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR 175 (414)
Q Consensus 97 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 175 (414)
..-|.+.|.+++|++.|..-... .| |..++..-..+|.+...+..|..-.+..+..+ ..-+-.|..-+.+--..|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 34578999999999999876644 56 88888888889999888887776555555432 1111223333333333445
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 043191 176 IMEAAALFTKLRVFGCELD 194 (414)
Q Consensus 176 ~~~a~~~~~~m~~~g~~~~ 194 (414)
.++|.+=++..... +|+
T Consensus 181 ~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHHhHHHHHhh--Ccc
Confidence 55555555555443 555
No 350
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=70.69 E-value=36 Score=24.31 Aligned_cols=79 Identities=13% Similarity=0.073 Sum_probs=37.6
Q ss_pred CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043191 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 219 (414)
..++|..+.+.+...+- -...+--+-+..+.+.|++++|+.. - .....||...|-+|-. .+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~---~-~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLL---P-QCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHH---H-TTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHh---c-ccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 34566666666665542 1222222333445666777766111 1 1112566666655533 35666666666666
Q ss_pred HHHcCC
Q 043191 220 EMANGN 225 (414)
Q Consensus 220 ~m~~~~ 225 (414)
.+..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 666555
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=70.51 E-value=1.3e+02 Score=30.56 Aligned_cols=93 Identities=10% Similarity=-0.036 Sum_probs=49.1
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-----
Q 043191 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV----- 279 (414)
Q Consensus 206 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~----- 279 (414)
....++++|..++.+....- -.|+...-..+...+. +..-...+..++.+.+.++.+ ....
T Consensus 426 ~s~~r~~ea~~li~~l~~~l------~~~~~~~~~~l~ae~~-------aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFL------KAPMHSRQGDLLAEFQ-------ALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred HHccChHHHHHHHHHHHHHh------CcCcccchhhHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 34678999999998887653 1222211111111110 011111224567777777666 3222
Q ss_pred -ccccccHHHHHHHHHhcCChhHHHHHHHhchh
Q 043191 280 -QCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311 (414)
Q Consensus 280 -~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 311 (414)
......+..+..+..-.|++++|..+.++..+
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 22233445566666677888888777776544
No 352
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=70.38 E-value=55 Score=26.33 Aligned_cols=226 Identities=17% Similarity=0.101 Sum_probs=138.7
Q ss_pred cCChhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCcchHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHHHHH
Q 043191 103 TKHYDTVLSLFKRLNLTGLF-PDRYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLCAESRIMEAA 180 (414)
Q Consensus 103 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~ 180 (414)
.+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666666666554322 13567777888888899999999888887753 33556667777778888888899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHH
Q 043191 181 ALFTKLRVFGCELDVFTYNTLIN-GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS 259 (414)
Q Consensus 181 ~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~ 259 (414)
+.+.........+ ......... .+...|+++.|...+.+.... .|....+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~----------------- 169 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL--------DPELNELAEA----------------- 169 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCccchHHH-----------------
Confidence 9999888754332 222233333 788999999999999998652 2210000000
Q ss_pred HHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhh
Q 043191 260 CMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339 (414)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 339 (414)
+......+...++.+.+...+..............+..+-..+...++++.+..
T Consensus 170 --------------------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 223 (291)
T COG0457 170 --------------------------LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE 223 (291)
T ss_pred --------------------------HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHH
Confidence 001111134446777777777766654221134556666666777776666666
Q ss_pred hhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 340 YETVFLLFKRLNSTGLFPD-LYTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 340 ~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
.+...... .|+ ...+..+...+...|..+.+...+.+..+.
T Consensus 224 ------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 224 ------YYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ------HHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666654 222 334444444444666677777777776654
No 353
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.17 E-value=31 Score=25.48 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 043191 108 TVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS 154 (414)
Q Consensus 108 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 154 (414)
+..+-++.+..-.+.|+.......+++|-+.+++..|..+|+.++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455666666677788888888888888888888888888777654
No 354
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.15 E-value=52 Score=26.71 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=68.1
Q ss_pred CCCCCCCCCHHhHHHHHHHHHhcCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 043191 61 GEGDITSITPNEALCVFDYMLNMRPSRPP---VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK 137 (414)
Q Consensus 61 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 137 (414)
...++++|++++|..-|...+..-|..+. ...|..-..++.+.+.++.|+.--.+..+.+.. .......-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 45778999999999999999988762222 224555556778889999999888877766421 22223333457888
Q ss_pred cCCcchHHHHHHHHHHcC
Q 043191 138 MGRVSHGFVVLGRILRSC 155 (414)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~ 155 (414)
...++.|++=|..+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 889999999999998873
No 355
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=70.10 E-value=74 Score=27.70 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 043191 359 LYTYNILINCFCKIGRVSSGF 379 (414)
Q Consensus 359 ~~~~~~li~~~~~~g~~~~a~ 379 (414)
..+|..|+.++|..|+.+..+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 456777777777777766543
No 356
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.55 E-value=1.2e+02 Score=30.10 Aligned_cols=54 Identities=20% Similarity=-0.031 Sum_probs=28.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 168 KDLCAESRIMEAAALFTKLRVFGCEL---DVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+-+.+.+.+++|++..+.... ..+ -...+...|..+.-.|++++|-...-.|..
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 344555566666665554332 122 233455566666666666666666655543
No 357
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.62 E-value=1.4e+02 Score=30.49 Aligned_cols=206 Identities=13% Similarity=0.069 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCC--CchhHHHHHhhccchhhHhhhh
Q 043191 197 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS--ANFLGFSCMASFSALNKMAFYF 274 (414)
Q Consensus 197 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~ 274 (414)
-|..|+..|...|+.++|+++|.+..+..... -.--...+-.++.-..+.+.. +-++.+....-....+...++|
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~---d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~If 582 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDT---DSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIF 582 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccccc---ccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeee
Confidence 37889999999999999999999998733100 011112233355555555554 4455555555556666666666
Q ss_pred hh-hhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCC--------hhhhhhhhhHHH
Q 043191 275 PL-VRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ--------MDETKHYETVFL 345 (414)
Q Consensus 275 ~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------~~~a~~~~~a~~ 345 (414)
.. .........-. .+-.|......+-+..+++.+....-.++..-.+.++.-|+..=+ .+++.+.- ..+
T Consensus 583 t~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~-~re 660 (877)
T KOG2063|consen 583 TSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETT-VRE 660 (877)
T ss_pred eccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhh-HHH
Confidence 53 11111111111 233456667888899999998876666677778888877765322 22222200 000
Q ss_pred HHHHHHh--CCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHhhhhC-------------CCCCCHHHHHHHHH
Q 043191 346 LFKRLNS--TGLFPD--------LYTYNILINCFCKIGRVSSGFVIFGRILPS-------------CFTPDAVTFTSLIK 402 (414)
Q Consensus 346 ~~~~m~~--~~~~p~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------g~~p~~~~~~~li~ 402 (414)
-+..+.+ ....|. ...|....--+.+.|+-++|+.++-..+.. ...++...|..++.
T Consensus 661 kl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~ 740 (877)
T KOG2063|consen 661 KLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLR 740 (877)
T ss_pred HHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHH
Confidence 1111111 122222 222222222234888888888877665541 23447788888888
Q ss_pred HHHHc
Q 043191 403 ILEIN 407 (414)
Q Consensus 403 ~~~~~ 407 (414)
.|...
T Consensus 741 ~~l~~ 745 (877)
T KOG2063|consen 741 IYLNP 745 (877)
T ss_pred HHhcc
Confidence 88766
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.28 E-value=24 Score=23.57 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=23.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHH
Q 043191 172 AESRIMEAAALFTKLRVFGCELD--VFTYNTLINGLCRTGHTIVALNL 217 (414)
Q Consensus 172 ~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~ 217 (414)
..++.++|+..+....+.-..+. -.+...++.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665554422211 12445556666666666655543
No 359
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=67.78 E-value=50 Score=32.05 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=58.8
Q ss_pred HHHHHHHhcCChhHHHHHHHhchhC--CCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHH
Q 043191 288 CLIDGLCKISKLKIARELFQSLPRA--GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365 (414)
Q Consensus 288 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~l 365 (414)
+|..+|...|++-.+.++++..... |-+.-...||..|+.+.+.|.++-..-.+.+-.++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7999999999999999999988654 333345678999999999998765433344444555554 44578888887
Q ss_pred HHHHHh
Q 043191 366 INCFCK 371 (414)
Q Consensus 366 i~~~~~ 371 (414)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 776544
No 360
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.41 E-value=19 Score=24.04 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=27.1
Q ss_pred hcCCcchHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHH
Q 043191 137 KMGRVSHGFVVLGRILRSCFTPD--AVTFTSLIKDLCAESRIMEAAAL 182 (414)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~ 182 (414)
..++.+.|+..|...++.-..+. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777766665422211 13456667777777777766654
No 361
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.05 E-value=84 Score=27.18 Aligned_cols=135 Identities=9% Similarity=-0.017 Sum_probs=79.9
Q ss_pred cchhhHhhhhh--hhh--hccccccHHHHHHHHHh-cC-ChhHHHHHHHhc-hhCCCCCCHhhHHHHHHHHHhcCChhhh
Q 043191 265 SALNKMAFYFP--LVR--VQCLCLNFLCLIDGLCK-IS-KLKIARELFQSL-PRAGLMPNVVTYNILIRGLCNDGQMDET 337 (414)
Q Consensus 265 ~~~~~a~~~~~--~~~--~~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~a 337 (414)
..+.+|...++ -.+ .-.|......+++.... .+ ....-.++.+-+ ...|..++..+...++..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34455555555 111 23344444455555544 11 122222233322 2334566778888888899998888777
Q ss_pred hhhhhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-----hhhCCCCCCHHHHHHHHHHHH
Q 043191 338 KHYETVFLLFKRLNST-GLFPDLYTYNILINCFCKIGRVSSGFVIFGR-----ILPSCFTPDAVTFTSLIKILE 405 (414)
Q Consensus 338 ~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~p~~~~~~~li~~~~ 405 (414)
.+ +|+..... +..-|...|..+|+.....|+..-...+.++ +.+.|+..+...-..+-..+.
T Consensus 222 ~~------fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 222 FQ------FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HH------HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 66 77776654 5566888899999999999988776666654 234456666665555544443
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.64 E-value=52 Score=31.46 Aligned_cols=132 Identities=15% Similarity=0.017 Sum_probs=84.8
Q ss_pred HhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHH
Q 043191 71 NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGR 150 (414)
Q Consensus 71 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 150 (414)
+-+-.+|..|.+... |-=.+.|...-...-.|+...|...+.................|.....+.|....|-.++.+
T Consensus 590 e~~~~~~~~~~~~~~--p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q 667 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNA--PIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQ 667 (886)
T ss_pred HHHHHHHHHhcCCCC--CeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHH
Confidence 557777777765433 333333443334445788888888877665432111223344466667777777888888887
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043191 151 ILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206 (414)
Q Consensus 151 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 206 (414)
.+... ...+-++-.+-+++.-..+++.|++.|++..+.. +.+.+.-+.|...-|
T Consensus 668 ~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 668 ALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 77765 4456677778888999999999999998877664 334555555555444
No 363
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.39 E-value=48 Score=26.41 Aligned_cols=67 Identities=7% Similarity=0.186 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHhCCCCCC--HHHH-----HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCC
Q 043191 340 YETVFLLFKRLNSTGLFPD--LYTY-----NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409 (414)
Q Consensus 340 ~~~a~~~~~~m~~~~~~p~--~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 409 (414)
+|.|+.+|+.+.+.--.|. .... ...+-.|.+.|.+++|.+++++... .|+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 3445557777766432221 1122 2334568999999999999999987 3555555555555555443
No 364
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=65.56 E-value=16 Score=31.47 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=37.8
Q ss_pred CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHH
Q 043191 354 GLFPDLY-TYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLI 401 (414)
Q Consensus 354 ~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 401 (414)
.+.|+.. .|+..|+...+.||+++|++++++..+.|+.--..+|-.-+
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3446655 46799999999999999999999999999875556654443
No 365
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.35 E-value=50 Score=26.59 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=35.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC
Q 043191 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392 (414)
Q Consensus 346 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 392 (414)
..++..+ ..|++.+|..++.++...|+.++|.++.+++... -|
T Consensus 133 ~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l--yP 175 (193)
T PF11846_consen 133 WAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRL--YP 175 (193)
T ss_pred HHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 4444443 4799999999999999999999999999999873 55
No 366
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=65.32 E-value=1e+02 Score=27.43 Aligned_cols=145 Identities=11% Similarity=0.011 Sum_probs=94.0
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCC------------hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 77 FDYMLNMRPSRPPVTSFNILFGCLAKTKH------------YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~------------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
|+...+.+| .|+.+|-.++..--..-. .+.-+.++++..+.+ +-+......+|..+.+..+.+..
T Consensus 8 l~~~v~~~P--~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 8 LNRRVRENP--HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHhCc--ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHH
Confidence 333444444 678888877765433221 345677888877763 23566677788888888888888
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHHc------CC----CCCH-------HHHHHHHHH
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCA---ESRIMEAAALFTKLRVF------GC----ELDV-------FTYNTLING 204 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~------g~----~~~~-------~~~~~li~~ 204 (414)
.+-++.+.... +-+...|...|..... .-.++...++|.+.... |. .+-. .++.-+...
T Consensus 85 ~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 85 AKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 88999998874 3367778877776554 23466666666654331 11 0111 223334444
Q ss_pred HHhcCChHHHHHHHHHHHcCC
Q 043191 205 LCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 205 ~~~~g~~~~a~~~~~~m~~~~ 225 (414)
+.++|..+.|..+++.+.+-+
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHH
Confidence 567899999999999999876
No 367
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.86 E-value=1.1e+02 Score=27.84 Aligned_cols=119 Identities=11% Similarity=0.011 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCC
Q 043191 126 YTYNILINCFCKMGRVSHGFVVLGRILRS--CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF---------GCELD 194 (414)
Q Consensus 126 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------g~~~~ 194 (414)
..+.-+...|...|+++.|++.|.+...- ..+..+..|-.+|..-.-.|+|..+..+..+..+. .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 35566677777777777777777764432 11223444555666666666666655555544332 13344
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHH
Q 043191 195 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246 (414)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~ 246 (414)
...+..+...+.+ ++..|.+.|-............+.|...+....+.+.
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL 280 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL 280 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh
Confidence 4555555444433 6666665554443322222334556555444444444
No 368
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.78 E-value=18 Score=22.84 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043191 71 NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL 118 (414)
Q Consensus 71 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 118 (414)
+...++++.+... +.|-.-.-.+|.++.+.|++++|.++++.+.+
T Consensus 7 ~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444455544432 24444455677777777888887777776653
No 369
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=64.61 E-value=62 Score=24.75 Aligned_cols=26 Identities=0% Similarity=-0.109 Sum_probs=12.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCC
Q 043191 131 LINCFCKMGRVSHGFVVLGRILRSCF 156 (414)
Q Consensus 131 li~~~~~~~~~~~a~~~~~~~~~~~~ 156 (414)
++..+.+.++.-.|.++|+.+.+.+.
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 44444444444555555555555443
No 370
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.71 E-value=99 Score=26.83 Aligned_cols=53 Identities=13% Similarity=-0.037 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhh
Q 043191 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339 (414)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 339 (414)
++.....|..+|.+.+|.++.+....... .+...|-.++..+...|+--.+..
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~k 334 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIK 334 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhh
Confidence 45567889999999999999998877643 377889999999999999766666
No 371
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=63.16 E-value=17 Score=17.82 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 197 TYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 197 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+|..+...+...|+++.|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455566667777777777777776654
No 372
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=62.86 E-value=1.1e+02 Score=27.02 Aligned_cols=95 Identities=19% Similarity=0.130 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhch----hCCCCCCHhhHHHHHHHHHhcC-ChhhhhhhhhHHHHHHHHHhCCCCCCHH
Q 043191 286 FLCLIDGLCKISKLKIARELFQSLP----RAGLMPNVVTYNILIRGLCNDG-QMDETKHYETVFLLFKRLNSTGLFPDLY 360 (414)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~m~----~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~a~~~~~~m~~~~~~p~~~ 360 (414)
+......||+.|+.+.|++.+.+.. ..|.+.|+..+.+=+.-+.... -..+- ++..+.+.+.|-..+..
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~------iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES------IEKAKSLIEEGGDWERR 180 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH------HHHHHHHHHhCCChhhh
Confidence 3446678899999999998887653 4577777776655554333222 22333 33666777777665543
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 361 ----TYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 361 ----~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
+|..+ -|....++.+|-.+|-+.+..
T Consensus 181 NRlKvY~Gl--y~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 181 NRLKVYQGL--YCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hhHHHHHHH--HHHHHHhHHHHHHHHHHHccc
Confidence 44433 245677899998888776643
No 373
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=62.73 E-value=88 Score=25.87 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCC
Q 043191 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCF 390 (414)
Q Consensus 359 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 390 (414)
..||--+.+-+...|+.++|..+|+-.+..++
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 34677777888899999999999998877543
No 374
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=62.05 E-value=1.9e+02 Score=29.46 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=56.8
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCC----Hh---hHHHHHHH-HHhcCCcchHHHHHHHHHHc----CCCCCHHhHHHHH
Q 043191 100 LAKTKHYDTVLSLFKRLNLTGLFPD----RY---TYNILINC-FCKMGRVSHGFVVLGRILRS----CFTPDAVTFTSLI 167 (414)
Q Consensus 100 ~~~~~~~~~a~~~~~~m~~~g~~p~----~~---~~~~li~~-~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li 167 (414)
.....++.+|..+..++...-..|+ .. .++.|-.. ....|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 4567888999888888654321222 21 23322221 23457788888877776553 2344556667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043191 168 KDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
.+..-.|++++|..+..+..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH
Confidence 7777889999998887776654
No 375
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=61.79 E-value=12 Score=27.86 Aligned_cols=29 Identities=24% Similarity=0.581 Sum_probs=17.8
Q ss_pred CCcchHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043191 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169 (414)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 169 (414)
|.-..|..+|..|+++|-+||. |+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 4445577777777777766654 5555544
No 376
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.42 E-value=50 Score=22.59 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=6.0
Q ss_pred CCcchHHHHHHHHH
Q 043191 139 GRVSHGFVVLGRIL 152 (414)
Q Consensus 139 ~~~~~a~~~~~~~~ 152 (414)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 377
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=61.08 E-value=17 Score=31.45 Aligned_cols=44 Identities=20% Similarity=0.171 Sum_probs=31.1
Q ss_pred CCCHhhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 043191 87 RPPVTSF-NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI 130 (414)
Q Consensus 87 ~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 130 (414)
.|+..+| |..|+...+.||+++|+.++++.++.|+.--..+|-.
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3555554 6888888888888888888888888877644444433
No 378
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.95 E-value=44 Score=26.94 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=15.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043191 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187 (414)
Q Consensus 157 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 187 (414)
.|+..+|..++..+...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444445555555555555555544444444
No 379
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=60.78 E-value=56 Score=28.43 Aligned_cols=72 Identities=17% Similarity=0.337 Sum_probs=55.8
Q ss_pred HHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------c
Q 043191 303 RELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK----------I 372 (414)
Q Consensus 303 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~ 372 (414)
.++|+.|.+.++.|.-..+.-+.-.+.+.=.+.+... +|+.+.. |..-|..|+..||. .
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~------lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~ 331 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIR------LWDSLLS-----DPQRFDFLLYICCSMLILVRERILE 331 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHH------HHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4788889999999998888877777788777777777 9999986 44447777777764 5
Q ss_pred CCHHHHHHHHHhh
Q 043191 373 GRVSSGFVIFGRI 385 (414)
Q Consensus 373 g~~~~a~~~~~~m 385 (414)
|++...+++++.-
T Consensus 332 ~DF~~nmkLLQ~y 344 (370)
T KOG4567|consen 332 GDFTVNMKLLQNY 344 (370)
T ss_pred cchHHHHHHHhcC
Confidence 7777777776543
No 380
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=58.01 E-value=1.3e+02 Score=26.44 Aligned_cols=86 Identities=9% Similarity=-0.117 Sum_probs=49.6
Q ss_pred hcCChhHHHHHHHHHHhCCC----CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 043191 102 KTKHYDTVLSLFKRLNLTGL----FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177 (414)
Q Consensus 102 ~~~~~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 177 (414)
..+..+.|.+.|+.....+. ..+......++....+.|+.+.-..+++.... ..+......++.+++-..+.+
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHH
Confidence 44446677777777665321 33455555666666666665554444444443 235666777777877777777
Q ss_pred HHHHHHHHHHHcC
Q 043191 178 EAAALFTKLRVFG 190 (414)
Q Consensus 178 ~a~~~~~~m~~~g 190 (414)
...++++.....+
T Consensus 219 ~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 219 LLKRLLDLLLSND 231 (324)
T ss_dssp HHHHHHHHHHCTS
T ss_pred HHHHHHHHHcCCc
Confidence 7777777777643
No 381
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=57.62 E-value=41 Score=30.96 Aligned_cols=123 Identities=18% Similarity=0.195 Sum_probs=57.9
Q ss_pred hhhhHHHHHHHHhhhcCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 043191 45 DRASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124 (414)
Q Consensus 45 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 124 (414)
.-..+.+.++..++. .+.|++.+|+..|+.++..-+ +...-...+.+++.+++....+
T Consensus 200 ~l~~L~~~Lk~gyk~-----~t~gKF~eA~~~Fr~iL~~i~-----------l~vv~~~~E~~e~~eli~icrE------ 257 (422)
T PF06957_consen 200 SLSSLEERLKEGYKL-----FTAGKFEEAIEIFRSILHSIP-----------LLVVESREEEDEAKELIEICRE------ 257 (422)
T ss_dssp -HHHHHHHHHHHHHH-----HHTT-HHHHHHHHHHHHHHHH-----------C--BSSCHHHHHHHHHHHHHHH------
T ss_pred CHHHHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHHhh-----------eeeecCHHHHHHHHHHHHHHHH------
Confidence 334455666665554 577899999999998865321 1111111223333333332221
Q ss_pred HhhHHHHHHHHHhc---C---CcchHHHHHHHHHHcCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043191 125 RYTYNILINCFCKM---G---RVSHGFVVLGRILRSCFTPDA--VTFTSLIKDLCAESRIMEAAALFTKLRVFG 190 (414)
Q Consensus 125 ~~~~~~li~~~~~~---~---~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 190 (414)
++....|..-.+. . +.+...++-..+-...+.|.. -+....|..+-+.+++..|-.+-+++.+.+
T Consensus 258 -Yilgl~iEl~Rr~l~~~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~ 330 (422)
T PF06957_consen 258 -YILGLSIELERRELPKDPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELN 330 (422)
T ss_dssp -HHHHHHHHHHHCTS-TTTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT-
T ss_pred -HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcC
Confidence 1111111111111 0 011222333333333333332 234566667778899999999999998765
No 382
>PRK09687 putative lyase; Provisional
Probab=57.55 E-value=1.3e+02 Score=26.13 Aligned_cols=236 Identities=13% Similarity=0.041 Sum_probs=131.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCc----chHHHHHHHHHHcCCCCCHHh
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV----SHGFVVLGRILRSCFTPDAVT 162 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 162 (414)
.+|.......+..+...|.. ++...+..+... +|...-...+.+++..|+. .++..++..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 46666677777777777753 444444444432 3555556667777777764 3566666666433 456666
Q ss_pred HHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchh
Q 043191 163 FTSLIKDLCAESRI-----MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAI 237 (414)
Q Consensus 163 ~~~li~~~~~~g~~-----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~ 237 (414)
-...+.+++..+.- ..+...+..... .++..+-...+.++++.++ .++...+-.+.+.. |..
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d~---------~~~ 174 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKDP---------NGD 174 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcCC---------CHH
Confidence 66677776665421 233333333332 3456666677777777776 45566666655432 222
Q ss_pred hHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcC-ChhHHHHHHHhchhCCCCC
Q 043191 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS-KLKIARELFQSLPRAGLMP 316 (414)
Q Consensus 238 ~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p 316 (414)
.-...+.++ .+.+ ....+...+..+.. .+
T Consensus 175 VR~~A~~aL-----------------------------------------------g~~~~~~~~~~~~L~~~L~---D~ 204 (280)
T PRK09687 175 VRNWAAFAL-----------------------------------------------NSNKYDNPDIREAFVAMLQ---DK 204 (280)
T ss_pred HHHHHHHHH-----------------------------------------------hcCCCCCHHHHHHHHHHhc---CC
Confidence 222222222 2211 12344444444443 24
Q ss_pred CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHH
Q 043191 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396 (414)
Q Consensus 317 ~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 396 (414)
|..+-...+.++.+.|+. .+.. .+-...+.+ + .....+.++...|+. +|...+.++.+. .||..+
T Consensus 205 ~~~VR~~A~~aLg~~~~~-~av~------~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v 269 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDK-RVLS------VLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEI 269 (280)
T ss_pred ChHHHHHHHHHHHccCCh-hHHH------HHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhH
Confidence 666677777788877774 3444 444444332 2 234667788888885 688888887764 457777
Q ss_pred HHHHHHHHHH
Q 043191 397 FTSLIKILEI 406 (414)
Q Consensus 397 ~~~li~~~~~ 406 (414)
-...+.+|.+
T Consensus 270 ~~~a~~a~~~ 279 (280)
T PRK09687 270 ITKAIDKLKR 279 (280)
T ss_pred HHHHHHHHhc
Confidence 6666666643
No 383
>PRK10941 hypothetical protein; Provisional
Probab=57.39 E-value=70 Score=27.52 Aligned_cols=76 Identities=14% Similarity=0.088 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHc-CCCCCHHhHHHHHHHHH
Q 043191 94 NILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVTFTSLIKDLC 171 (414)
Q Consensus 94 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~ 171 (414)
+.+-.+|.+.++++.|+.+.+.+... .| +..-+.--.-.|.+.|.+..|..=++..++. .-.|+.......+....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 45566677777777777777777655 33 3444555555677777777777777777654 23445555555554443
No 384
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=56.98 E-value=1e+02 Score=29.94 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=0.0
Q ss_pred CChhHHHHHHHhchhCCCCCCHhhHHHHHH
Q 043191 297 SKLKIARELFQSLPRAGLMPNVVTYNILIR 326 (414)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 326 (414)
|++.+|.+.+-.+...+..|...-...|.+
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp ------------------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 677777777777777767666555544444
No 385
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.90 E-value=71 Score=22.95 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=24.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHhchh
Q 043191 285 NFLCLIDGLCKISKLKIARELFQSLPR 311 (414)
Q Consensus 285 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 311 (414)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 378899999999999999999999876
No 386
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.78 E-value=1.6e+02 Score=27.08 Aligned_cols=135 Identities=13% Similarity=-0.018 Sum_probs=66.3
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCcc
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTS--FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRY--TYNILINCFCKMGRVS 142 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~ 142 (414)
.|+.+.+..++ +.|. .++... ..+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+
T Consensus 12 ~g~~~iv~~Ll----~~g~-~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 12 FGELDIARRLL----DIGI-NPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred hCCHHHHHHHH----HCCC-CCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 46665555444 4454 444332 345566667777764 444455566655432 1233455566778766
Q ss_pred hHHHHHHHHHHcCCCCCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHH
Q 043191 143 HGFVVLGRILRSCFTPDAV---TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFT--YNTLINGLCRTGHTIVALNL 217 (414)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~ 217 (414)
.+..+ .+.|...+.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+
T Consensus 83 ~v~~L----l~~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 83 AVEEL----LDLGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred HHHHH----HHcCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 54444 4444322111 1123344455666654 4444555565554321 11233444566776554444
Q ss_pred H
Q 043191 218 F 218 (414)
Q Consensus 218 ~ 218 (414)
+
T Consensus 155 l 155 (413)
T PHA02875 155 I 155 (413)
T ss_pred H
Confidence 4
No 387
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.77 E-value=61 Score=22.17 Aligned_cols=15 Identities=0% Similarity=0.104 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhcCCH
Q 043191 361 TYNILINCFCKIGRV 375 (414)
Q Consensus 361 ~~~~li~~~~~~g~~ 375 (414)
.|..++.++...|.-
T Consensus 68 aF~~Fl~aLreT~~~ 82 (88)
T cd08819 68 WFSKFLQALRETEHH 82 (88)
T ss_pred HHHHHHHHHHHcCch
Confidence 344444444444443
No 388
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.00 E-value=2.1e+02 Score=28.18 Aligned_cols=180 Identities=15% Similarity=0.116 Sum_probs=104.7
Q ss_pred HhHHHHHHHHHhcCCCCC--CHhhHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCHh-----hHHHHHHHHHhcCCcc
Q 043191 71 NEALCVFDYMLNMRPSRP--PVTSFNILFGCLA-KTKHYDTVLSLFKRLNLTGLFPDRY-----TYNILINCFCKMGRVS 142 (414)
Q Consensus 71 ~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~-----~~~~li~~~~~~~~~~ 142 (414)
..|++.++.+.+.....| +..++-.+...+. ...++++|...+++.....-.++-. +-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 567778887775333233 3345666667666 6788999999999864332222211 1234556666666554
Q ss_pred hHHHHHHHHHHc--C--CCCCHHhHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--hcCChH
Q 043191 143 HGFVVLGRILRS--C--FTPDAVTFTSL-IKDLCAESRIMEAAALFTKLRVFG---CELDVFTYNTLINGLC--RTGHTI 212 (414)
Q Consensus 143 ~a~~~~~~~~~~--~--~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~--~~g~~~ 212 (414)
|...+++.++. + ..+-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888887664 2 22223334444 333334489999999998876532 2344455555555544 445567
Q ss_pred HHHHHHHHHHcCCCCC---CccccCchhhHHHHHHHHHhhcC
Q 043191 213 VALNLFEEMANGNGEF---GVVCEPDAITYSTIIDGLCKEAG 251 (414)
Q Consensus 213 ~a~~~~~~m~~~~~~~---~~~~~p~~~~~~~li~~~~~~~~ 251 (414)
++.+.++++....... +....|...+|..+++.++....
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~ 238 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQ 238 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHc
Confidence 7777777664322100 01134567788888887776433
No 389
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=55.99 E-value=70 Score=31.14 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=61.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCCcch------HHHHHHHHHHcCCCCCHHhHHHH
Q 043191 95 ILFGCLAKTKHYDTVLSLFKRLNLT--GLFPDRYTYNILINCFCKMGRVSH------GFVVLGRILRSCFTPDAVTFTSL 166 (414)
Q Consensus 95 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 166 (414)
+|+.+|...|++..+.++++.+... |-+.-...||..|+...+.|.++. +.+++++. -+.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 8999999999999999999988754 333345568888888888887653 23333333 355578888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 043191 167 IKDLCAESRIMEAAALFTKLRV 188 (414)
Q Consensus 167 i~~~~~~g~~~~a~~~~~~m~~ 188 (414)
+.+-..--+-....-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7776654444444445555443
No 390
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.93 E-value=1.2e+02 Score=28.37 Aligned_cols=307 Identities=14% Similarity=0.067 Sum_probs=151.9
Q ss_pred hHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH--HHHHHHHHcCCCC---------
Q 043191 92 SFNILFGCLA--KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF--VVLGRILRSCFTP--------- 158 (414)
Q Consensus 92 ~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~--~~~~~~~~~~~~~--------- 158 (414)
.|..+-.++. ..+.++..++++..+...|.......+|.....|.+.|...... +-++.+...-..|
T Consensus 17 ~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~ 96 (696)
T KOG2471|consen 17 NYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSL 96 (696)
T ss_pred hHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhh
Confidence 3444444443 45789999999999998887777777888888888888654322 2222222211111
Q ss_pred ---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhcCChHHHHHHHH---HHHcCCCC
Q 043191 159 ---DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF-----TYNTLINGLCRTGHTIVALNLFE---EMANGNGE 227 (414)
Q Consensus 159 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~---~m~~~~~~ 227 (414)
+..-||.-+ .|....++..|+++...+...- ++=.. ........+....+.++|+.++. +|...+.
T Consensus 97 ~~~t~~~yn~aV-i~yh~~~~g~a~~~~~~lv~r~-e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~- 173 (696)
T KOG2471|consen 97 KQGTVMDYNFAV-IFYHHEENGSAMQLSSNLVSRT-ESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKR- 173 (696)
T ss_pred hcchHHhhhhhe-eeeeHhhcchHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 111222222 2333445556666665554431 11111 11223445667788888877554 4443321
Q ss_pred CCccccCc--hhhHHHHHHHHHhhcC-----------CCchhHHHHHhhccchhhHhhhhh-hhhhccccccHHHH-HHH
Q 043191 228 FGVVCEPD--AITYSTIIDGLCKEAG-----------SANFLGFSCMASFSALNKMAFYFP-LVRVQCLCLNFLCL-IDG 292 (414)
Q Consensus 228 ~~~~~~p~--~~~~~~li~~~~~~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~l-i~~ 292 (414)
..++ ..+-+.+++......- .........++....+..+..-.+ ......+...+..| -..
T Consensus 174 ----~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~ 249 (696)
T KOG2471|consen 174 ----MKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQL 249 (696)
T ss_pred ----ccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHH
Confidence 1111 1222222221110000 000000011112222333322222 11112222222222 233
Q ss_pred HHhcCChhHHHHHHHhch---hCCCCCCH-----hhHHHHHHHHHhcCChhhhhh-hhhHHHHHHHHHhCCCCCCH----
Q 043191 293 LCKISKLKIARELFQSLP---RAGLMPNV-----VTYNILIRGLCNDGQMDETKH-YETVFLLFKRLNSTGLFPDL---- 359 (414)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~---~~g~~p~~-----~~~~~li~~~~~~g~~~~a~~-~~~a~~~~~~m~~~~~~p~~---- 359 (414)
+.-.|++.+|.+++...- ..|...+. ..||.|-..+.+.|.+..+.. |.+|++=+..-...|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 455689999998886542 22322222 223444444445555554444 22333222222235665532
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHc
Q 043191 360 -------YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407 (414)
Q Consensus 360 -------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 407 (414)
.+||.= -.|...|++-.|.+.|.+..+. +..++..|-.|..+|.-.
T Consensus 330 s~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 223332 2477899999999999998876 678999999999999764
No 391
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.75 E-value=1.1e+02 Score=24.59 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=30.4
Q ss_pred HHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCC
Q 043191 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQ 333 (414)
Q Consensus 289 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 333 (414)
.+..|.+.|.+++|.+++++.... |+......-+....+..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 567889999999999999998763 455555555555555544
No 392
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=55.55 E-value=58 Score=29.53 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHH
Q 043191 94 NILFGCLAKTKHY---DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFT 164 (414)
Q Consensus 94 ~~li~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (414)
+.++..+.+.++. -+|.-+++...... +-|...--.+++.|...|-...|.++|..+.-..+..|+..|.
T Consensus 184 ~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~ 256 (365)
T PF09797_consen 184 HSLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL 256 (365)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH
Confidence 4455555554443 34566666665542 2244455567778888888888888887775544554444433
No 393
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.47 E-value=16 Score=27.21 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=9.3
Q ss_pred CCCHHhHHHHHHHHHhcCC
Q 043191 67 SITPNEALCVFDYMLNMRP 85 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~ 85 (414)
.|.-.+|..+|.+|.+.|.
T Consensus 108 ygsk~DaY~VF~kML~~G~ 126 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGN 126 (140)
T ss_pred hccCCcHHHHHHHHHhCCC
Confidence 3444455555555555443
No 394
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=54.35 E-value=87 Score=30.06 Aligned_cols=156 Identities=16% Similarity=0.079 Sum_probs=94.6
Q ss_pred CCHHhHHHHHHH-HHhcCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 68 ITPNEALCVFDY-MLNMRPSRPPVTSFNILFGCLAKTK--HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 68 ~~~~~A~~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
..++.-.+.++- |..... -|+..+...++.-....- ..+-+..++..|.. .+.|--.+.|...--+...|+...|
T Consensus 549 ~~~~~~~~~l~~r~d~k~~-~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a 626 (886)
T KOG4507|consen 549 HTLSYLVKELEVRMDLKAK-MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFA 626 (886)
T ss_pred ccHHHHHHHhhhccccccc-CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHH
Confidence 344444455442 222221 355555555554433322 23345555555543 2344444444333334456888889
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
...+.........-.-+..-.|.....+.|....|..++.+..... .....++-.+.+++....+.++|++.|++..+.
T Consensus 627 ~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 627 IACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 8888777654322233345556677778888888988888776654 334567778889999999999999999988876
Q ss_pred CC
Q 043191 225 NG 226 (414)
Q Consensus 225 ~~ 226 (414)
..
T Consensus 706 ~~ 707 (886)
T KOG4507|consen 706 TT 707 (886)
T ss_pred CC
Confidence 54
No 395
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.35 E-value=1.2e+02 Score=24.66 Aligned_cols=92 Identities=10% Similarity=0.018 Sum_probs=64.5
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043191 132 INCFCKMGRVSHGFVVLGRILRSCFT--PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209 (414)
Q Consensus 132 i~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 209 (414)
...+...+++++|..-++..+...-. ....+--.|.+.....|.+|+|+++++.....+. .......-..++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 34567889999999988877653111 0112223455667888999999999998875532 2333444567888999
Q ss_pred ChHHHHHHHHHHHcCC
Q 043191 210 HTIVALNLFEEMANGN 225 (414)
Q Consensus 210 ~~~~a~~~~~~m~~~~ 225 (414)
+-++|..-|+...+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999988764
No 396
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=54.11 E-value=35 Score=21.83 Aligned_cols=51 Identities=16% Similarity=0.076 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHc
Q 043191 356 FPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407 (414)
Q Consensus 356 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 407 (414)
.|....++.++..+++..-.++++..+.++.+.|. .+..+|.--++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999985 5788888887777764
No 397
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.58 E-value=1.6e+02 Score=26.11 Aligned_cols=97 Identities=9% Similarity=-0.025 Sum_probs=64.9
Q ss_pred CHhhHHHHHHHHHhcC------------CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043191 124 DRYTYNILINCFCKMG------------RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC 191 (414)
Q Consensus 124 ~~~~~~~li~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 191 (414)
|..+|-.++..--..- -.+.-+.++++.++.+ +-+....-.+|..+.+..+.++..+-++++....
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~- 95 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN- 95 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-
Confidence 6667766665432221 1345567888888874 4577778888899999999999999999998763
Q ss_pred CCCHHHHHHHHHHHHhc---CChHHHHHHHHHHH
Q 043191 192 ELDVFTYNTLINGLCRT---GHTIVALNLFEEMA 222 (414)
Q Consensus 192 ~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~ 222 (414)
+-+...|...|...... -.++.+..+|.+..
T Consensus 96 ~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 96 PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 33677787777765542 23555555555443
No 398
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=51.81 E-value=37 Score=21.72 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=27.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043191 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207 (414)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 207 (414)
|....++.++..+++..-.++++..+.+..+.|. .+..+|---++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666653 455555555555444
No 399
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=51.13 E-value=32 Score=18.33 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=19.6
Q ss_pred CHHHHHHHHHhhhhCCCCCCHHHHHHHH
Q 043191 374 RVSSGFVIFGRILPSCFTPDAVTFTSLI 401 (414)
Q Consensus 374 ~~~~a~~~~~~m~~~g~~p~~~~~~~li 401 (414)
.++.|..+|++.+. +.|++.+|....
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHHH
Confidence 46788899998887 468888776543
No 400
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=51.02 E-value=33 Score=17.35 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=15.9
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 043191 69 TPNEALCVFDYMLNMRPSRPPVTSFNILFG 98 (414)
Q Consensus 69 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 98 (414)
+++.|..+|+.+....+ .+...|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~--~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFP--KSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCC--CChHHHHHHHH
Confidence 45666677776665544 44555554443
No 401
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.53 E-value=12 Score=32.76 Aligned_cols=92 Identities=12% Similarity=0.066 Sum_probs=50.4
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcch
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR-YTYNILINCFCKMGRVSH 143 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~ 143 (414)
+..|.++.|++.|...+..++ +....|..-.+++.+.+.+..|++=++...+. .||. .-|-.--.+....|++++
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp--~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNP--PLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred hcCcchhhhhcccccccccCC--chhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 345566666666666666654 55555555556666666666666655555443 2332 123322333344566666
Q ss_pred HHHHHHHHHHcCCCCCH
Q 043191 144 GFVVLGRILRSCFTPDA 160 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~ 160 (414)
|-..+....+.++.+..
T Consensus 201 aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHHhccccHHH
Confidence 66666666666554433
No 402
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.51 E-value=1.3e+02 Score=25.47 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 196 FTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 196 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
...-.|..-|.+.|++++|.++|+.+..
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344567788899999999999998853
No 403
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.03 E-value=1.7e+02 Score=25.04 Aligned_cols=103 Identities=16% Similarity=0.029 Sum_probs=52.3
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCCHhhHHHHHHHHHhcCCc
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSL----FKRLNLTGLFPDRYTYNILINCFCKMGRV 141 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 141 (414)
+++++++|++++..- ...+.+.|+...|-++ ++-..+.++..|......++..+...+.-
T Consensus 2 ~~kky~eAidLL~~G----------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG----------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HTT-HHHHHHHHHHH----------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred ccccHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Confidence 346677777766432 2233445555444433 33334456666766666666666655432
Q ss_pred c-hHHHHHHHHHH---cC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 043191 142 S-HGFVVLGRILR---SC--FTPDAVTFTSLIKDLCAESRIMEAAALFT 184 (414)
Q Consensus 142 ~-~a~~~~~~~~~---~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 184 (414)
+ +-.++.+.+++ .| -.-++..+..+...|.+.|++.+|...|-
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 2 23333333332 21 22366778888888999999988887654
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.99 E-value=56 Score=22.60 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=12.6
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 043191 97 FGCLAKTKHYDTVLSLFKRLN 117 (414)
Q Consensus 97 i~~~~~~~~~~~a~~~~~~m~ 117 (414)
.......|++++|...+++..
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 344455666666666666654
No 405
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.46 E-value=83 Score=22.50 Aligned_cols=61 Identities=10% Similarity=0.092 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--CcchHHHHHHHHHHcCC
Q 043191 94 NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG--RVSHGFVVLGRILRSCF 156 (414)
Q Consensus 94 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~ 156 (414)
..++..|...++.++|...+.++... .--......++..+...+ .-+....++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 45666777778888888888776422 112233344444444432 22334455666665554
No 406
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=47.87 E-value=2.5e+02 Score=26.68 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=38.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.|-...-+++..+++...+.-+..+..+|...| -+-..|..++++|..+ .-+.-..+|+++.+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 344555566666666666666666666666654 2555666666666666 44555666665555
No 407
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.44 E-value=1.8e+02 Score=24.91 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=101.4
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCC--CCHhhHHHHHHHHHh
Q 043191 65 ITSITPNEALCVFDYMLNMRPSR--PPVTSFNILFGCLAKTKHYDTVLSLFKRLNL---TGLF--PDRYTYNILINCFCK 137 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~--p~~~~~~~li~~~~~ 137 (414)
++...+++|+.-|..+.+..+.+ ....+...++....+.+++++....+.+|.. ..+. -+..+.|+++..-..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 45668999999999998876521 2344567788999999999999998888752 1122 245567777776666
Q ss_pred cCCcchHHHHHHHHHHc--CCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC------CCCHHHHHHH
Q 043191 138 MGRVSHGFVVLGRILRS--CFTPDA---VTFTSLIKDLCAESRIMEAAALFTKLRVF-----GC------ELDVFTYNTL 201 (414)
Q Consensus 138 ~~~~~~a~~~~~~~~~~--~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~------~~~~~~~~~l 201 (414)
+.+.+.-.+.|+.-++. .-+-+. .|-.-|-..|...|++.+..+++.++... |- ..=..+|..=
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 66666555555443321 001011 12234566677778888888888877543 10 1113467777
Q ss_pred HHHHHhcCChHHHHHHHHHHHc
Q 043191 202 INGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 202 i~~~~~~g~~~~a~~~~~~m~~ 223 (414)
|+.|....+-.+...++++...
T Consensus 198 IQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHH
Confidence 7778777777777777776654
No 408
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.01 E-value=1.2e+02 Score=26.99 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=47.2
Q ss_pred HHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHH
Q 043191 346 LFKRLNSTGLFPDL----YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406 (414)
Q Consensus 346 ~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 406 (414)
++..++.. .|+. ..|-.+++.....|.+++++.+|++.+..|..|-...-..+++.+-.
T Consensus 125 ~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~ 187 (353)
T PF15297_consen 125 TLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKM 187 (353)
T ss_pred HHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 66666654 4453 46777888888999999999999999999999988887777777663
No 409
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=45.97 E-value=1.5e+02 Score=26.26 Aligned_cols=51 Identities=16% Similarity=0.286 Sum_probs=23.9
Q ss_pred HhcCCcchHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043191 136 CKMGRVSHGFVVLGRILRSCFTPDA---VTFTSLIKDLCAESRIMEAAALFTKLRV 188 (414)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 188 (414)
.+.|+..+|.+.++.+.+.- |-. .....||.++....-+.++..++.+..+
T Consensus 286 RklGrlrEA~K~~RDL~ke~--pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKEF--PLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHhhhHHHHHHHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34566666666665554431 111 1233455555555544444444444433
No 410
>PRK10941 hypothetical protein; Provisional
Probab=45.90 E-value=2e+02 Score=24.84 Aligned_cols=78 Identities=15% Similarity=0.056 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHH
Q 043191 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242 (414)
Q Consensus 163 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~l 242 (414)
.+.+-.+|.+.++++.|+.+.+.+.... +.+..-+.--.-.|.+.|.+..|..=++...+... -.|+.......
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P-----~dp~a~~ik~q 257 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP-----EDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-----CchhHHHHHHH
Confidence 4566677899999999999999998874 34555677677779999999999999998876542 34555555555
Q ss_pred HHHH
Q 043191 243 IDGL 246 (414)
Q Consensus 243 i~~~ 246 (414)
+...
T Consensus 258 l~~l 261 (269)
T PRK10941 258 IHSI 261 (269)
T ss_pred HHHH
Confidence 5544
No 411
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.86 E-value=68 Score=19.49 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHH
Q 043191 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKI 403 (414)
Q Consensus 364 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 403 (414)
.+.-++.+.|++++|.+..+.+++ +.|+-.-...|-..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 345678999999999999999998 57876655555443
No 412
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=45.50 E-value=1.6e+02 Score=26.76 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043191 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 199 (414)
-+|.-+++...... +-+...--.+++.|...|-.+.|.+.|..+.-+.+..|+..|.
T Consensus 200 ~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~ 256 (365)
T PF09797_consen 200 LQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL 256 (365)
T ss_pred HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH
Confidence 34455555555443 4455555566777777777777777777766555555554443
No 413
>PF12990 DUF3874: Domain of unknonw function from B. Theta Gene description (DUF3874); InterPro: IPR024450 This domain of unknown function if found in uncharacterised proteins from Bacteroides thetaiotaomicron and other Bacteroidetes.
Probab=44.26 E-value=75 Score=20.92 Aligned_cols=56 Identities=16% Similarity=0.024 Sum_probs=35.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC
Q 043191 47 ASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK 104 (414)
Q Consensus 47 ~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 104 (414)
+..|+.+..+++...+ -..|.+=.|.++|+.+.+..+..-...+-+.+.+.+.+.|
T Consensus 4 ~p~EqlF~~~FR~a~~--~Ee~e~lsa~~If~~L~k~~~~~l~~~~~~~FGriL~~~g 59 (73)
T PF12990_consen 4 PPEEQLFHCCFRPAEE--GEEGEWLSAAEIFERLQKKSPAALRGSNPNHFGRILQKLG 59 (73)
T ss_pred CHHHHHHHHHccCCCC--CccceeecHHHHHHHHHHhCccccccCCHHHHHHHHHHcC
Confidence 3467777777665444 4667778899999999888764444444455555554443
No 414
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.11 E-value=1.1e+02 Score=25.95 Aligned_cols=58 Identities=9% Similarity=0.044 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHc----C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043191 129 NILINCFCKMGRVSHGFVVLGRILRS----C-FTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186 (414)
Q Consensus 129 ~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 186 (414)
..+..-|.+.|+++.|.++|+.+... | ..+...+...+..++.+.|+.+..+.+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556677777777777777766432 2 2445556666777777777777776665554
No 415
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.04 E-value=2.2e+02 Score=24.97 Aligned_cols=58 Identities=9% Similarity=0.142 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHh
Q 043191 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248 (414)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~ 248 (414)
.++++.|...++.|.-.++..+.-.+.+.=.+.+++.+|+.+.... .-|..++..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----------~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----------QRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----------hhhHHHHHHHHH
Confidence 4677888888899998888888888888888999999999987633 237778887776
No 416
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=43.97 E-value=93 Score=23.49 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=31.9
Q ss_pred CCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 043191 88 PPVTSFNILFGCLAKTKH---YDTVLSLFKRLNLTGLFP--DRYTYNILINCFCKMGRVSHGFVVLGRILRS 154 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 154 (414)
++..+--.+..++.+..+ ..+-+.+|+++.+.. .| ......-|.-++.+.++++.+.++.+.+++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333333334444444433 344455666655421 22 2233333444566666666666666666654
No 417
>PRK09857 putative transposase; Provisional
Probab=43.95 E-value=2.2e+02 Score=24.89 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043191 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194 (414)
Q Consensus 128 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 194 (414)
+..++.-..+.++.++..++++.+.+. .+......-++..-+.+.|.-+++.++..+|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555445666666667777666655 233333444555666666766677777777777776544
No 418
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.82 E-value=2.6e+02 Score=25.67 Aligned_cols=89 Identities=10% Similarity=0.012 Sum_probs=54.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC---CCCCccccC
Q 043191 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFG--CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN---GEFGVVCEP 234 (414)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~p 234 (414)
...+.-+..-|..+|+++.|++.|.+.+..- .+..+..|-.+|..-.-.|+|..+.....+..... ......+.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 3567778888999999999999999866531 12234455566666666777776666665555441 111111455
Q ss_pred chhhHHHHHHHHHh
Q 043191 235 DAITYSTIIDGLCK 248 (414)
Q Consensus 235 ~~~~~~~li~~~~~ 248 (414)
-...+..+..-+.+
T Consensus 230 kl~C~agLa~L~lk 243 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK 243 (466)
T ss_pred chHHHHHHHHHHHH
Confidence 55555555554444
No 419
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.46 E-value=1.2e+02 Score=21.74 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 361 TYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 361 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
-|..|+..|...|..++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888899999999999999998887
No 420
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.35 E-value=1.5e+02 Score=22.68 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=29.4
Q ss_pred HhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043191 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG 373 (414)
Q Consensus 307 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 373 (414)
+.+.+.|.+++.. =..++..+...++.-.|.+ +++.+.+.+...+..|....++.+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAee------i~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEE------LYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHH------HHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344455544332 2334455555555455555 6666665555554444444445554444
No 421
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=42.86 E-value=3.4e+02 Score=26.76 Aligned_cols=128 Identities=13% Similarity=0.040 Sum_probs=78.4
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCCC--HhhHHHHHHHHH-hcCCcchHHHHHHHHHHcCCCCCHH-
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLN-LTGLFPD--RYTYNILINCFC-KMGRVSHGFVVLGRILRSCFTPDAV- 161 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~--~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~- 161 (414)
..++..|..||. .|++.++-+. ...+.|. ..++-.+...+. ...+++.|...+++.....-.++..
T Consensus 27 ~~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 356777877776 4566666666 4444443 344555556554 6789999999999775543222222
Q ss_pred ----hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHcC
Q 043191 162 ----TFTSLIKDLCAESRIMEAAALFTKLRVF----GCELDVFTYNTL-INGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 162 ----~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
+...++..+.+.+... |...+++..+. +..+-...|..+ +..+...+++..|.+.++.+...
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~ 168 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQL 168 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2235566777777666 88888876553 122223334444 33333447999999999888764
No 422
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=42.77 E-value=1.8e+02 Score=23.54 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043191 164 TSLIKDLCAESRIMEAAALFTKLRVFGC--------------ELDVFTYNTLINGLCRTGHTIVALNLFEE 220 (414)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~--------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 220 (414)
-+++..|-+..+|.+..++++.|.+..+ .+--...|.....|.++|..|.|+.++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3566778888999999999998866422 22335678888899999999999999884
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.33 E-value=2.4e+02 Score=25.84 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=25.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCC--HhhHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPP--VTSFNILFGCLA--KTKHYDTVLSLFKRLNL 118 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~--~~~~~~~a~~~~~~m~~ 118 (414)
..+++..|.++|+.+... . .++ ...+..+..+|. ..-++++|.+.|+....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l-~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-L-PGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-C-CchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445666666666666654 2 122 223344444332 34455566666665543
No 424
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.00 E-value=1.9e+02 Score=23.52 Aligned_cols=89 Identities=9% Similarity=0.040 Sum_probs=48.5
Q ss_pred HHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHH-----HHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHH
Q 043191 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI-----LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNI 364 (414)
Q Consensus 290 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~ 364 (414)
...+...|++++|+.-++..... |....+.. |.+.....|.+++|.. +++...+.+.. ......
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~------~L~t~~~~~w~--~~~~el 164 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALK------TLDTIKEESWA--AIVAEL 164 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHH------HHhccccccHH--HHHHHH
Confidence 34555667777777766655432 12222222 2344556666666666 66665544221 122222
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCC
Q 043191 365 LINCFCKIGRVSSGFVIFGRILPSC 389 (414)
Q Consensus 365 li~~~~~~g~~~~a~~~~~~m~~~g 389 (414)
--+.+...|+-++|..-|++.++.+
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3345667777777777777777654
No 425
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=41.85 E-value=90 Score=22.47 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=26.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCc
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 141 (414)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444455556666666666665555555555556666666543
No 426
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.51 E-value=1e+02 Score=22.30 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=11.4
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcC
Q 043191 132 INCFCKMGRVSHGFVVLGRILRSC 155 (414)
Q Consensus 132 i~~~~~~~~~~~a~~~~~~~~~~~ 155 (414)
+..+.++...++|+++++.|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 333344444455555555555544
No 427
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=41.49 E-value=1e+02 Score=20.64 Aligned_cols=15 Identities=7% Similarity=0.096 Sum_probs=6.4
Q ss_pred HHHHHHHHcCCCCCH
Q 043191 146 VVLGRILRSCFTPDA 160 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~ 160 (414)
++++.+.+.|..++.
T Consensus 40 ~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 40 EIVKLLLENGADINS 54 (89)
T ss_dssp HHHHHHHHTTTCTT-
T ss_pred HHHHHHHHhcccccc
Confidence 444444445444433
No 428
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.48 E-value=1.2e+02 Score=20.97 Aligned_cols=23 Identities=35% Similarity=0.264 Sum_probs=15.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHc
Q 043191 201 LINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 201 li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+.......|++++|.+.+++..+
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445566777777777777665
No 429
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.22 E-value=2.6e+02 Score=24.86 Aligned_cols=59 Identities=12% Similarity=-0.022 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVF---TYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
..|..+..+.|+..+|.+.|+.+.+. .|=.. +...|+.++....-+.++..++-+.-+-
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44555556789999999999987654 23222 3345788888777777777776666543
No 430
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.03 E-value=1.4e+02 Score=21.64 Aligned_cols=38 Identities=21% Similarity=0.099 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043191 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203 (414)
Q Consensus 165 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 203 (414)
++++.+.+|.-.++|+++.+-|.+.| ..+...-+.|-.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34677788999999999999999888 455544444433
No 431
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=41.00 E-value=54 Score=31.87 Aligned_cols=147 Identities=10% Similarity=0.033 Sum_probs=48.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043191 89 PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168 (414)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 168 (414)
+...|..-+..+..+++.. ....+.+..+-...+...-.-++..|.+.|-.+.+.++.+.+-..-+ ...-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 3445777777777666443 55555555442234666777888888888888888888877655422 2345667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH---------HHH---------HhcCChHHHHHHHHHHHcCCC
Q 043191 169 DLCAESRIMEAAALFTKLRVF----GCELDVFTYNTLI---------NGL---------CRTGHTIVALNLFEEMANGNG 226 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li---------~~~---------~~~g~~~~a~~~~~~m~~~~~ 226 (414)
-+.++|+...+..+-+.+.+. |...+....+.+. ..| .+.|++.+|.+.+-.+....
T Consensus 447 ~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~- 525 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSP- 525 (566)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCC-
Confidence 788888887766665555432 2222222211111 111 23466777777776666655
Q ss_pred CCCccccCchhhHHHHHHH
Q 043191 227 EFGVVCEPDAITYSTIIDG 245 (414)
Q Consensus 227 ~~~~~~~p~~~~~~~li~~ 245 (414)
..|...-...+.++
T Consensus 526 -----~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 526 -----IAPKSFWPLLLCDA 539 (566)
T ss_dssp -------------------
T ss_pred -----CCcHHHHHHHHHHH
Confidence 56655544444443
No 432
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.94 E-value=4.2e+02 Score=27.26 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043191 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL 217 (414)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 217 (414)
+....+..+-+.+++..|-.+-.++.+.+-.|....-..-+...+. .+...|.++
T Consensus 1086 alrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~e-knp~Da~~l 1140 (1202)
T KOG0292|consen 1086 ALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAE-KNPTDAYEL 1140 (1202)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhh-cCccccccc
Confidence 4556667777888888888887777777655554433333333332 233444443
No 433
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.50 E-value=1.3e+02 Score=21.39 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCC
Q 043191 287 LCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356 (414)
Q Consensus 287 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~ 356 (414)
..++.-|...|+.++|..-+.++..... .......++..+...++.. -+.+..++..+...+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~--~~~vv~~~l~~~le~~~~~----r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQ--HHEVVKVILECALEEKKSY----REYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGG--HHHHHHHHHHHHHTSSHHH----HHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhhccHHH----HHHHHHHHHHHHhcCCC
Confidence 4567778888999999999988743211 2233344444444432211 12233467777766544
No 434
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.23 E-value=2.5e+02 Score=24.48 Aligned_cols=109 Identities=10% Similarity=0.100 Sum_probs=55.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 043191 98 GCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177 (414)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 177 (414)
....+.++..+..+.++.+. ....-...+..+...|++..|++++....+.- . +..-|+.+=.. ..+++
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L---~~~L~ 174 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHL---SSQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHH---hHHHH
Confidence 33334444444444444443 22233445666778889999988887776531 0 00111111111 11222
Q ss_pred HHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043191 178 EAAALFTKLRVFG-----CELDVFTYNTLINGLCRTGHTIVALNL 217 (414)
Q Consensus 178 ~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~a~~~ 217 (414)
+-....+++.+.. ..-|...|..++.+|.-.|+...+.+-
T Consensus 175 e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2222222222110 145788999999999998877665543
No 435
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=39.54 E-value=1.2e+02 Score=20.67 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=20.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 181 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
++|+-....|+..|...|.+++..+.-+=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 4444444445555555555555444444444445555555543
No 436
>PRK11619 lytic murein transglycosylase; Provisional
Probab=39.34 E-value=4e+02 Score=26.55 Aligned_cols=135 Identities=10% Similarity=0.003 Sum_probs=71.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCCcch
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYT-YNILINCFCKMGRVSH 143 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~ 143 (414)
++.|++..+.++-..+.. .+ -.....|..+...+. ...+++....+++-. -.|-... -...+..+++.+++..
T Consensus 44 ~~~g~~~~~~~~~~~l~d-~p-L~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKD-YP-LYPYLEYRQLTQDLM-NQPAVQVTNFIRANP---TLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHCCCHHHHHHHHHhccC-CC-cHhHHHHHHHHhccc-cCCHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHccCHHH
Confidence 456788888777776632 22 223333433333221 223454444443322 2333222 2334445566666665
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 043191 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 211 (414)
....+ .. .+.+...-.....+....|+.++|.+....+-..| ......++.++..+.+.|.+
T Consensus 118 ~~~~~----~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 118 LLAFS----PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHhc----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCC
Confidence 55422 11 24455555667777888888887777777665555 33455666677777665553
No 437
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=39.19 E-value=1.2e+02 Score=20.64 Aligned_cols=65 Identities=8% Similarity=-0.006 Sum_probs=44.7
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043191 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 123 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
|+...|..-++...... .++ .++|+-....|+..|..+|..++..+.-.=-.+...++++.|...
T Consensus 8 ~~~~~~k~~~~rk~~Ls-~eE-~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLS-AEE-VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred ChHHHHHHHHHHHhccC-HHH-HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 34555555554332222 122 388999899999999999999988777766777777777777643
No 438
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=38.98 E-value=4e+02 Score=26.39 Aligned_cols=196 Identities=13% Similarity=0.048 Sum_probs=88.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCc-------chHHHHHHHHHHcCCCCCHH---
Q 043191 92 SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV-------SHGFVVLGRILRSCFTPDAV--- 161 (414)
Q Consensus 92 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~--- 161 (414)
.| .+|-.|.++|++++|.++.+..... .......+...+..|....+- +....-|++..+.....|+.
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~A 191 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRA 191 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 44 4777889999999999999655533 344556677788887765321 23333344433332211322
Q ss_pred hHHHHHH-----------------------HHHhcCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043191 162 TFTSLIK-----------------------DLCAESR-----------IMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207 (414)
Q Consensus 162 ~~~~li~-----------------------~~~~~g~-----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 207 (414)
+|..+.. .+++... +++..+.+.+.-+....+ ....-.....+.-
T Consensus 192 vY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p~~Yf~~LlL 270 (613)
T PF04097_consen 192 VYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNPLLYFQVLLL 270 (613)
T ss_dssp HHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-------HHHHHHH
T ss_pred HHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhHHHHHHHHHH
Confidence 2222210 0011000 001111111111111111 1111123455566
Q ss_pred cCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHH
Q 043191 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287 (414)
Q Consensus 208 ~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 287 (414)
.|+++.|.+.+-... + ...+.+.+...+.-|.-.+-.. ... ...+......+....+.
T Consensus 271 tgqFE~AI~~L~~~~--~------~~~dAVH~AIaL~~~gLL~~~~-------------~~~-~~lls~~~~~~~~ln~a 328 (613)
T PF04097_consen 271 TGQFEAAIEFLYRNE--F------NRVDAVHFAIALAYYGLLRVSD-------------SSS-APLLSVDPGDPPPLNFA 328 (613)
T ss_dssp TT-HHHHHHHHHT----T-------HHHHHHHHHHHHHTT--------------------------------------HH
T ss_pred HhhHHHHHHHHHhhc--c------CcccHHHHHHHHHHcCCCCCCC-------------ccc-cceeeecCCCCCCcCHH
Confidence 899999999888722 2 5677888887777664432111 111 11222111122226678
Q ss_pred HHHHHHHhc---CChhHHHHHHHhchhC
Q 043191 288 CLIDGLCKI---SKLKIARELFQSLPRA 312 (414)
Q Consensus 288 ~li~~~~~~---~~~~~a~~~~~~m~~~ 312 (414)
.||..|.+. .++.+|.++|--+...
T Consensus 329 rLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 329 RLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp HHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 889888763 5678898888877654
No 439
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=38.87 E-value=60 Score=20.50 Aligned_cols=15 Identities=20% Similarity=-0.042 Sum_probs=6.9
Q ss_pred CCHHhHHHHHHHHHh
Q 043191 68 ITPNEALCVFDYMLN 82 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~ 82 (414)
|++=+|-++++.+..
T Consensus 13 g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 13 GDFFEAHEVLEELWK 27 (62)
T ss_dssp T-HHHHHHHHHHHCC
T ss_pred CCHHHhHHHHHHHHH
Confidence 444455555555443
No 440
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.71 E-value=86 Score=22.57 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=29.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcc
Q 043191 365 LINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFR 411 (414)
Q Consensus 365 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 411 (414)
++..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 34444444555567777777777666667776666677777766554
No 441
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.55 E-value=1.8e+02 Score=22.23 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=45.4
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCccc
Q 043191 347 FKRLNSTGLFPDLYTYNILINCFCKI-GRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412 (414)
Q Consensus 347 ~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 412 (414)
-+.+.+.|++++..=. .++..+... +..-.|.++++.+.+.+...+..|.-.-++.+...|-..+
T Consensus 5 ~~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~ 70 (148)
T PRK09462 5 NTALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (148)
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3445667777655433 334444443 4677899999999998877788887778888888886643
No 442
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=38.21 E-value=95 Score=29.38 Aligned_cols=97 Identities=18% Similarity=0.104 Sum_probs=48.7
Q ss_pred HHHHHhhhcCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhH--HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 043191 52 FLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSF--NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129 (414)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 129 (414)
..+++.+...+..+...++++|+++|+.-. -|..+- +..+..+....+.++..++-.+++++=---....|.
T Consensus 614 I~ESLAKm~Ls~~ate~hV~EA~RLF~vST------mdAa~~g~l~g~egf~s~e~~e~i~rie~qlkrr~~IG~~~se~ 687 (729)
T KOG0481|consen 614 IAESLAKMELSPFATEAHVEEALRLFQVST------MDAASQGTLAGVEGFTSPEDQEEIKRIEKQLKRRFAIGSQVSEH 687 (729)
T ss_pred HHHHHHhhcCCccccHHHHHHHHHHHhHhh------HHHHhcCchhcccccCCHHHHHHHHHHHHHHHHhcccccchhHH
Confidence 444555566667777788888888887431 111111 122222222223333334444444331112455677
Q ss_pred HHHHHHHhcCCcchHH-HHHHHHHHc
Q 043191 130 ILINCFCKMGRVSHGF-VVLGRILRS 154 (414)
Q Consensus 130 ~li~~~~~~~~~~~a~-~~~~~~~~~ 154 (414)
.+++-+.+.|--+.+. +++..|.++
T Consensus 688 ~li~df~~~~y~e~~v~kal~~m~~r 713 (729)
T KOG0481|consen 688 SLIRDFVRQGYSEHAVKKALQIMLRR 713 (729)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhh
Confidence 7887777666555443 344444444
No 443
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=37.79 E-value=3.3e+02 Score=25.10 Aligned_cols=144 Identities=15% Similarity=0.069 Sum_probs=78.3
Q ss_pred hhhhhHHHHHHHHhhhcCCCCCCCC--CHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhH--HHHHHHHHHhC
Q 043191 44 KDRASLEQFLKERCKSSGEGDITSI--TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDT--VLSLFKRLNLT 119 (414)
Q Consensus 44 ~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~--a~~~~~~m~~~ 119 (414)
-....+...++........++-... =.++|++.+-.+. .-|...--.++.......+..+ ..+.+++....
T Consensus 163 L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s-----~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~ 237 (436)
T COG2256 163 LSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLS-----NGDARRALNLLELAALSAEPDEVLILELLEEILQR 237 (436)
T ss_pred CCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhc-----CchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhh
Confidence 3445555555554443333332111 1255666665553 2344433334444433332221 13333333222
Q ss_pred ---CCCCCHhhHHHHHHHHHhc---CCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH-----HHHHHHHHHHHH
Q 043191 120 ---GLFPDRYTYNILINCFCKM---GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI-----MEAAALFTKLRV 188 (414)
Q Consensus 120 ---g~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~a~~~~~~m~~ 188 (414)
-...+-+.+..+++++.++ .+.+.|+-.+.+|++.|-.|-...-..++-++-.-|.. .-|...++....
T Consensus 238 ~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~ 317 (436)
T COG2256 238 RSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVER 317 (436)
T ss_pred hhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHH
Confidence 1233445566688887654 68999999999999999767666666677777666643 345555666666
Q ss_pred cCCC
Q 043191 189 FGCE 192 (414)
Q Consensus 189 ~g~~ 192 (414)
.|.+
T Consensus 318 lG~P 321 (436)
T COG2256 318 LGSP 321 (436)
T ss_pred hCCc
Confidence 6653
No 444
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=37.67 E-value=95 Score=22.60 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=24.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043191 95 ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140 (414)
Q Consensus 95 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 140 (414)
.++..+...+.+-.|.++++.|.+.+...+..|...-|..+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4445555555556666666666666555555554445555555553
No 445
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.51 E-value=2e+02 Score=22.61 Aligned_cols=23 Identities=4% Similarity=-0.048 Sum_probs=10.3
Q ss_pred CCcchHHHHHHHHHHcCCCCCHH
Q 043191 139 GRVSHGFVVLGRILRSCFTPDAV 161 (414)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~~~~ 161 (414)
++.-.|.++++.+.+.+...+..
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~a 61 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPP 61 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcc
Confidence 33444555555554444333333
No 446
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=37.02 E-value=2.9e+02 Score=24.16 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=31.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
++....+.++.....+.+..+. ....-...++.+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4445555555555555555554 233334456666778888888888777765
No 447
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=36.42 E-value=54 Score=21.59 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=28.8
Q ss_pred HhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcC
Q 043191 370 CKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408 (414)
Q Consensus 370 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 408 (414)
.-.|+.+.+.+++++..+.|+.|.......+..+..+.|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 456788888888888888887877777777777766655
No 448
>PRK09857 putative transposase; Provisional
Probab=35.54 E-value=2.6e+02 Score=24.43 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC
Q 043191 321 YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393 (414)
Q Consensus 321 ~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 393 (414)
+..++.-....++.++..+ +++.+.+. .........++..-+...|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~------~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFND------FIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHH------HHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4555555556676665555 66666554 222333445566777777877888999999999988755
No 449
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=35.02 E-value=1.4e+02 Score=21.74 Aligned_cols=31 Identities=0% Similarity=-0.070 Sum_probs=12.9
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCCCHH
Q 043191 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161 (414)
Q Consensus 131 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (414)
++......+..-.|.++++.+.+.+...+..
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~ 43 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLA 43 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HH
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHH
Confidence 3333444444444555555555444333333
No 450
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.88 E-value=1.6e+02 Score=20.75 Aligned_cols=45 Identities=13% Similarity=-0.024 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 179 AAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 179 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
..+.+++....+.....-....|.-.|.+.|+-+.|.+-|+.-+.
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 344455554443222222223344446666666666666665544
No 451
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.25 E-value=4.2e+02 Score=25.24 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=26.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043191 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196 (414)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 196 (414)
+...+..++......+....|+.+++++.+.|..|...
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 55556666666666556678888888888888765543
No 452
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=34.04 E-value=4.5e+02 Score=25.52 Aligned_cols=279 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhH-HHHHHHHHhcCChhHHHHHHHHHHhC-CCCC-CHhhHHHHHHHHHhcCCcchH
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSF-NILFGCLAKTKHYDTVLSLFKRLNLT-GLFP-DRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p-~~~~~~~li~~~~~~~~~~~a 144 (414)
|..+.+.++|++-...-+ .++..| +.+..+....|+.+...+.|+..... |..- ....|...|..-...+++...
T Consensus 93 g~~~~s~~Vfergv~aip--~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v 170 (577)
T KOG1258|consen 93 GNAENSVKVFERGVQAIP--LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRV 170 (577)
T ss_pred hhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHH
Q ss_pred HHHHHHHHHcC---------------------------------------------------------------------
Q 043191 145 FVVLGRILRSC--------------------------------------------------------------------- 155 (414)
Q Consensus 145 ~~~~~~~~~~~--------------------------------------------------------------------- 155 (414)
..+|++.++..
T Consensus 171 ~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~ 250 (577)
T KOG1258|consen 171 ANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEE 250 (577)
T ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHH
Q ss_pred ------------------------------------------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043191 156 ------------------------------------------FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL 193 (414)
Q Consensus 156 ------------------------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 193 (414)
..++..+|+.-+..-...|+.+.+.-+|++.... +..
T Consensus 251 ~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~ 329 (577)
T KOG1258|consen 251 KTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CAL 329 (577)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-Hhh
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhh
Q 043191 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273 (414)
Q Consensus 194 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 273 (414)
=...|--.+.-....|+.+-|..++....+-. .|+......+-..+....
T Consensus 330 Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-------~k~~~~i~L~~a~f~e~~----------------------- 379 (577)
T KOG1258|consen 330 YDEFWIKYARWMESSGDVSLANNVLARACKIH-------VKKTPIIHLLEARFEESN----------------------- 379 (577)
T ss_pred hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-------CCCCcHHHHHHHHHHHhh-----------------------
Q ss_pred hhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhh---hhhhHHHHHHHH
Q 043191 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETK---HYETVFLLFKRL 350 (414)
Q Consensus 274 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~---~~~~a~~~~~~m 350 (414)
|+++.|..+++.+.+.- .--...-..-+....+.|+.+.+. . ++...
T Consensus 380 -----------------------~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~------l~s~~ 429 (577)
T KOG1258|consen 380 -----------------------GNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNE------LYSSI 429 (577)
T ss_pred -----------------------ccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHH------HHHHh
Q ss_pred HhCCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCccc
Q 043191 351 NSTGLFPDLYTYNILINCFCK-----IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412 (414)
Q Consensus 351 ~~~~~~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 412 (414)
.+. +-+..+...+.--+++ .++.+.|..++.++.+. ..++...|..++..+...+...+
T Consensus 430 ~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~~e 493 (577)
T KOG1258|consen 430 YEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSGRE 493 (577)
T ss_pred ccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcchh
No 453
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.89 E-value=2.9e+02 Score=23.33 Aligned_cols=100 Identities=14% Similarity=0.174 Sum_probs=59.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHc-C-----------CCCCHHhHHHHHHH
Q 043191 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS-C-----------FTPDAVTFTSLIKD 169 (414)
Q Consensus 102 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~li~~ 169 (414)
+..+.+--.++.+-.+..++.-+..-...++ +...|+...|+..++.-... | -.|.+.....++..
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~ 248 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQA 248 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHH
Confidence 3333333334444444555655655555554 44567777777666544332 1 25666666666655
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043191 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205 (414)
Q Consensus 170 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 205 (414)
| ..+++++|.+++.++-+.|..|... .+.+.+++
T Consensus 249 ~-~~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 249 C-LKRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred H-HhccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 4 4578999999999999999876543 34444443
No 454
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.69 E-value=3.8e+02 Score=24.57 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=40.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHH--hcCCcchHHHHHHHHHHc
Q 043191 97 FGCLAKTKHYDTVLSLFKRLNLTGLFPDRY--TYNILINCFC--KMGRVSHGFVVLGRILRS 154 (414)
Q Consensus 97 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~~~ 154 (414)
+..+.+.+++..|.++|+.+... +.++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455889999999999999887 555544 4455555553 445778888888887665
No 455
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=32.62 E-value=3.2e+02 Score=23.40 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhh
Q 043191 194 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFY 273 (414)
Q Consensus 194 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 273 (414)
|......+...|.+.|++.+|...|-.- -.++...+..++..+...|...+.-.+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~----------~~~~~~~~~~ll~~~~~~~~~~e~dlf--------------- 143 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG----------TDPSAFAYVMLLEEWSTKGYPSEADLF--------------- 143 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----------HHHHHHHHHHHHHHHHHTSS--HHHH---------------
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc----------CChhHHHHHHHHHHHHHhcCCcchhHH---------------
Confidence 5667788889999999999888655322 234444444455555544433222111
Q ss_pred hhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhC
Q 043191 274 FPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312 (414)
Q Consensus 274 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 312 (414)
..-.+-.|.-.+++..|...++...+.
T Consensus 144 ------------i~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 144 ------------IARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ------------HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 112333455567788887777666543
No 456
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.53 E-value=2.3e+02 Score=21.65 Aligned_cols=20 Identities=5% Similarity=-0.162 Sum_probs=9.0
Q ss_pred cchHHHHHHHHHHcCCCCCH
Q 043191 141 VSHGFVVLGRILRSCFTPDA 160 (414)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~ 160 (414)
.-.|.++++.+.+.+...+.
T Consensus 33 h~sa~eI~~~l~~~~~~i~~ 52 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGL 52 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCH
Confidence 44455555555444433333
No 457
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.53 E-value=2.5e+02 Score=22.13 Aligned_cols=51 Identities=10% Similarity=-0.035 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 043191 93 FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143 (414)
Q Consensus 93 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 143 (414)
=..++..+...++.-.|.++++.+.+.+...+..|....|..+.+.|-+..
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 345666666667788899999999998877787777777888888876543
No 458
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=32.44 E-value=3.3e+02 Score=23.51 Aligned_cols=152 Identities=11% Similarity=-0.044 Sum_probs=90.5
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 043191 63 GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAK----TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 138 (414)
+.-...+...|.+.|......+. ......|...+.. ..+..+|..+|++..+.|..+...+...+-..|..-
T Consensus 86 g~gv~~~~~~A~~~~~~~a~~g~----~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g 161 (292)
T COG0790 86 GKGVSRDKTKAADWYRCAAADGL----AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSG 161 (292)
T ss_pred ccCccccHHHHHHHHHHHhhccc----HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Confidence 34445567888888886665443 3444556666655 347888889998888887554322333344444332
Q ss_pred -----C--CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043191 139 -----G--RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA----ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207 (414)
Q Consensus 139 -----~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 207 (414)
- +...|...|.+.-..+ +......|...|.. ..+.++|...|...-+.|. ......+- .+..
T Consensus 162 ~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~ 234 (292)
T COG0790 162 LQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYL 234 (292)
T ss_pred hhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHh
Confidence 1 2336788888887776 34444444444433 3478888888888888774 22222222 4444
Q ss_pred cC---------------ChHHHHHHHHHHHcCC
Q 043191 208 TG---------------HTIVALNLFEEMANGN 225 (414)
Q Consensus 208 ~g---------------~~~~a~~~~~~m~~~~ 225 (414)
.| +...|...+......+
T Consensus 235 ~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 235 NGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred cCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 44 5666666666666655
No 459
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=32.20 E-value=2.3e+02 Score=21.55 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=31.5
Q ss_pred CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG-LFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 317 ~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
+..+--.+..++.+..+.++..+ .+.+++.+.+.. -.-......-|.-++.+.++++++.++.+.+++
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~---GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQE---GIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHH---hHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444455555554444222 344555555411 111122333334455666666666666666555
No 460
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.09 E-value=3.5e+02 Score=23.34 Aligned_cols=139 Identities=10% Similarity=0.047 Sum_probs=88.1
Q ss_pred CCCHhhHHHHHHHH-HhcCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCCcchHHHHHHHHHHc---CC--C
Q 043191 87 RPPVTSFNILFGCL-AKTKHYDTVLSLFKRLNLTGLFPD---RYTYNILINCFCKMGRVSHGFVVLGRILRS---CF--T 157 (414)
Q Consensus 87 ~~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~--~ 157 (414)
.||+..=|.--..- .+...+++|+.-|.+..+..-.-. -...-.+|..+.+.+++++..+.|.+++.- .+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 56665544322211 234578999999999876521212 234456788899999999999988887542 12 2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVF-GCELDVF----TYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
-+..+.|++++.-..+.+.+....+++.-... .-..+.. |-..|...|...+++.+..++++++..+-
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 24556788888777777766665555543321 0011222 33567788888999999999999887643
No 461
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=30.67 E-value=7.2e+02 Score=26.89 Aligned_cols=146 Identities=15% Similarity=0.129 Sum_probs=89.3
Q ss_pred HhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH---HhC--CCC-C-CHhhHHHHHHHHHhcCCcch
Q 043191 71 NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRL---NLT--GLF-P-DRYTYNILINCFCKMGRVSH 143 (414)
Q Consensus 71 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m---~~~--g~~-p-~~~~~~~li~~~~~~~~~~~ 143 (414)
.+++.++......-. .+....|..+...+-+.++.++|+..=... .++ |.. | +...|..+-......++...
T Consensus 955 ~~slnl~~~v~~~~h-~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~ 1033 (1236)
T KOG1839|consen 955 PESLNLLNNVMGVLH-PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSG 1033 (1236)
T ss_pred hhhhhHHHHhhhhcc-hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccc
Confidence 344447774433322 366778889999999999999998875542 221 322 2 34456655555556667888
Q ss_pred HHHHHHHHHHc-----C--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC--CCCHHHHHHHHHHHHhcC
Q 043191 144 GFVVLGRILRS-----C--FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF-----GC--ELDVFTYNTLINGLCRTG 209 (414)
Q Consensus 144 a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~--~~~~~~~~~li~~~~~~g 209 (414)
|...+.+.... | .+|.+.+++.+-..+...++++.|.++++..... |. -.+..+|..+-+.+...+
T Consensus 1034 al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~ 1113 (1236)
T KOG1839|consen 1034 ALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMK 1113 (1236)
T ss_pred hhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhH
Confidence 88877776553 2 2334444455544455568889999888887653 10 234566777766666666
Q ss_pred ChHHHHHH
Q 043191 210 HTIVALNL 217 (414)
Q Consensus 210 ~~~~a~~~ 217 (414)
++..|...
T Consensus 1114 dfr~al~~ 1121 (1236)
T KOG1839|consen 1114 DFRNALEH 1121 (1236)
T ss_pred HHHHHHHH
Confidence 66555443
No 462
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=30.61 E-value=5e+02 Score=26.12 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred hHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCC-------------CCCCHHHHHHHH
Q 043191 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG-------------LFPDLYTYNILI 366 (414)
Q Consensus 300 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~-------------~~p~~~~~~~li 366 (414)
+-...+-..+...|+..+......++... .|++..+.. +++++...| -..+......++
T Consensus 182 eI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAln------LLDqaia~g~g~It~e~V~~lLG~~d~~~If~Ll 253 (709)
T PRK08691 182 QVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALS------LLDQAIALGSGKVAENDVRQMIGAVDKQYLYELL 253 (709)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHH------HHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHhhhhCCCCCCHHH
Q 043191 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396 (414)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 396 (414)
.++.+ ++...++.+++++.+.|+.+....
T Consensus 254 dAL~~-~d~~~al~~l~~L~~~G~d~~~~l 282 (709)
T PRK08691 254 TGIIN-QDGAALLAKAQEMAACAVGFDNAL 282 (709)
T ss_pred HHHHc-CCHHHHHHHHHHHHHhCCCHHHHH
No 463
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.57 E-value=6.2e+02 Score=26.07 Aligned_cols=178 Identities=10% Similarity=-0.017 Sum_probs=89.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccC--chhhHHHH
Q 043191 165 SLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP--DAITYSTI 242 (414)
Q Consensus 165 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p--~~~~~~~l 242 (414)
+....+...|+.+++..+-.-|. -|..++.-+++.|.+++|++++..-....- .-...| =...-...
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~~~el--~yk~ap~Li~~~p~~t 577 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQRNPEL--FYKYAPELITHSPKET 577 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhccchhh--HHHhhhHHHhcCcHHH
Confidence 33344455555555554444333 256788888999999999998876532110 000011 01112223
Q ss_pred HHHHHhhcCCCchhHHHHHh-------hccchhhHhhhhh-hhhh--ccccccHHHHHHHHHhcCChhHHHHHHHhchhC
Q 043191 243 IDGLCKEAGSANFLGFSCMA-------SFSALNKMAFYFP-LVRV--QCLCLNFLCLIDGLCKISKLKIARELFQSLPRA 312 (414)
Q Consensus 243 i~~~~~~~~~~~~~~~~~~~-------~~~~~~~a~~~~~-~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 312 (414)
+.++...++......+..++ .......+...++ .... ..+...+|.++..|++..+-+.-.. ++.....
T Consensus 578 V~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~-le~~~~~ 656 (911)
T KOG2034|consen 578 VSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLY-LEIIKFM 656 (911)
T ss_pred HHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHH-HHHHhhc
Confidence 34444444432222222222 1123334444444 2222 4567778888888887655443332 2222211
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCC
Q 043191 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL 355 (414)
Q Consensus 313 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~ 355 (414)
+-. ...-....++.|.+.+.-..+..+..++.+|.++++.-.
T Consensus 657 ~~~-~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL 698 (911)
T KOG2034|consen 657 KSR-VHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLAL 698 (911)
T ss_pred ccc-ceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHh
Confidence 111 223345566777777776666666666667777766433
No 464
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=30.21 E-value=6.6e+02 Score=26.28 Aligned_cols=162 Identities=12% Similarity=0.035 Sum_probs=81.9
Q ss_pred HhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHhhHHHHHHHHH-hcCCcchHH
Q 043191 71 NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG----LFPDRYTYNILINCFC-KMGRVSHGF 145 (414)
Q Consensus 71 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~-~~~~~~~a~ 145 (414)
++|.++|+.+....| ..-....+.+-....+....++-.+-+++..+.. -..|...... .|+ +......|.
T Consensus 1092 e~~~k~~~~l~s~yp-d~lpll~~~l~kl~~~sD~~kE~~~ki~eIl~~A~~Vi~~~D~eaL~~---y~~~k~D~r~da~ 1167 (1304)
T KOG1114|consen 1092 EEAEKIYNYLKSSYP-DYLPLLEVRLAKLMQKSDAVKETNKKIEEILSAADSVIQEIDTEALAR---YYALKEDTRPDAV 1167 (1304)
T ss_pred HHHHHHHHHHHHhCc-ccchHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHhhcHHHHHH---HHhcccCCcchHH
Confidence 669999999988776 2222233333333223222222111112221110 0123332222 222 333344577
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESR----------------------IMEAAALFTKLRVFGCELDVFTYNTLIN 203 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------------~~~a~~~~~~m~~~g~~~~~~~~~~li~ 203 (414)
.+-.+|.... +++|.++++.|. .+.-.+.|.++...--.-|..++..-..
T Consensus 1168 klk~~me~qk--------~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK~~~~a~~ 1239 (1304)
T KOG1114|consen 1168 KLKKKMEKQK--------DTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSKVWQIAKK 1239 (1304)
T ss_pred HHHHHHHHHH--------HHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCchheehhHH
Confidence 7777775432 456666655442 2233344444443221235555666666
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhh
Q 043191 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249 (414)
Q Consensus 204 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~ 249 (414)
.+...|++..|++++.++.+..+ -.++...|..++..+...
T Consensus 1240 ha~~~~~yGr~lK~l~kliee~~-----es~t~~~~~~~~el~~~L 1280 (1304)
T KOG1114|consen 1240 HAKALGQYGRALKALLKLIEENG-----ESATKDVAVLLAELLENL 1280 (1304)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHh
Confidence 67778999999999988887443 456666666655555444
No 465
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=29.87 E-value=3.1e+02 Score=22.33 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=36.9
Q ss_pred HHHHHHHhcCChhhhhhhhhHHHHHHHHHhCC--------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 043191 323 ILIRGLCNDGQMDETKHYETVFLLFKRLNSTG--------------LFPDLYTYNILINCFCKIGRVSSGFVIFGR 384 (414)
Q Consensus 323 ~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~--------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 384 (414)
+++-.|.+.-++.+..+ +++.|.+.. ..+--...|.....|.+.|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrk------vLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRK------VLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 34445555555555555 555555432 233445667888889999999999999884
No 466
>PRK09687 putative lyase; Provisional
Probab=29.51 E-value=3.8e+02 Score=23.28 Aligned_cols=140 Identities=11% Similarity=-0.044 Sum_probs=82.6
Q ss_pred HhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh----hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCc-----
Q 043191 71 NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY----DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV----- 141 (414)
Q Consensus 71 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~----- 141 (414)
+++...+..+.. .+|...-...+.++++.|+. .++...+..+... .++..+-...+.+++..+..
T Consensus 53 ~~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~ 126 (280)
T PRK09687 53 QDVFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYS 126 (280)
T ss_pred chHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccc
Confidence 344444444432 34555566677777777764 4677777776433 45666666677777665432
Q ss_pred chHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHH
Q 043191 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG-HTIVALNLFEE 220 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~ 220 (414)
..+.+.+..... .++..+-...+.++++.++ +++...+-.+.+ .+|..+-...+.++.+.+ +...+...+..
T Consensus 127 ~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~ 199 (280)
T PRK09687 127 PKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVA 199 (280)
T ss_pred hHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 223333333332 3466777788888888887 456666666665 345566666666666653 23456666666
Q ss_pred HHc
Q 043191 221 MAN 223 (414)
Q Consensus 221 m~~ 223 (414)
+..
T Consensus 200 ~L~ 202 (280)
T PRK09687 200 MLQ 202 (280)
T ss_pred Hhc
Confidence 654
No 467
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=29.35 E-value=1.1e+02 Score=23.05 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Q 043191 360 YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404 (414)
Q Consensus 360 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 404 (414)
-|...++. +-+.|-+.+...++++|++.|+..+..+|+.++.-.
T Consensus 111 GtlGvL~~-ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 111 GTLGVLAL-AKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred ehhHHHHH-HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 34454444 445788888889999999999999999998877654
No 468
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=29.15 E-value=2e+02 Score=20.85 Aligned_cols=35 Identities=20% Similarity=0.095 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043191 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209 (414)
Q Consensus 174 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 209 (414)
|+++.....+-.+.. |...|...+...+.++...|
T Consensus 62 Ge~~~~~~~ll~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 62 GEYDDIYEALLKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred CchHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 555555444444433 44556666666655555443
No 469
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=28.86 E-value=1.4e+02 Score=27.91 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=70.8
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCc
Q 043191 63 GDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD-RYTYNILINCFCKMGRV 141 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~ 141 (414)
..++.+.++.|..++.++.+..+ ..+..|..-..++.+.+++..|+.=+....+.. |+ ...|..=..++.+.+.+
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldp--nca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDP--NCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCC--cceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHH
Confidence 34567899999999999998764 445555555578889999999988887777663 43 23333334455566677
Q ss_pred chHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 043191 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 172 (414)
.+|+..|+..... .|+..-....+.-|-+
T Consensus 89 ~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKKL--APNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhhc--CcCcHHHHHHHHHHHH
Confidence 7777777776654 6777666666655444
No 470
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=28.80 E-value=4e+02 Score=23.28 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=23.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhH
Q 043191 201 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239 (414)
Q Consensus 201 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~ 239 (414)
+.+-..+.+++++|+..+.++...| ...|..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg------~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKG------VSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCC------CChhhhhh
Confidence 3445567888999999999998887 55555443
No 471
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.29 E-value=4.8e+02 Score=24.13 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 197 TYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 197 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+...|++.++-.||+..|+++++.+.-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl 150 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDL 150 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCc
Confidence 445678889999999999999988764
No 472
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.26 E-value=3.7e+02 Score=22.80 Aligned_cols=120 Identities=14% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 043191 100 LAKTKHYDTVLSLFKRLNLTGLFPDR-YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME 178 (414)
Q Consensus 100 ~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 178 (414)
|.....++.|+..|.+.... .|+. .-|..-+-++.+..+++.+.+--...++.. +-.+-..-.+-.+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhccccH
Q ss_pred HHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043191 179 AAALFTKL----RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222 (414)
Q Consensus 179 a~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 222 (414)
|+..+.+. ++..+.+....+..|..+--+.=...+..++.++..
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
No 473
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.24 E-value=5.5e+02 Score=24.73 Aligned_cols=92 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred hHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCC-------------CCCHHHHHHHH
Q 043191 300 KIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL-------------FPDLYTYNILI 366 (414)
Q Consensus 300 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~-------------~p~~~~~~~li 366 (414)
+-...+-..+.+.|+..+......++... .|++..|.. +++++...|- .++......++
T Consensus 182 ~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~------lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll 253 (509)
T PRK14958 182 QIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALS------LLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDIL 253 (509)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHH------HHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHH
Q 043191 367 NCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSL 400 (414)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 400 (414)
.++.. |+.+.+..++++|.+.|..|.......+
T Consensus 254 ~al~~-~d~~~~l~~~~~l~~~g~~~~~il~~l~ 286 (509)
T PRK14958 254 EALAA-KAGDRLLGCVTRLVEQGVDFSNALADLL 286 (509)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHHH
No 474
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.36 E-value=8e+02 Score=26.34 Aligned_cols=36 Identities=11% Similarity=-0.098 Sum_probs=21.0
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHH
Q 043191 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLC 247 (414)
Q Consensus 206 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~ 247 (414)
|..=..+.|..-++.|..-- ..++...+..+..+|-
T Consensus 568 c~~F~I~gae~~irkMl~LV------Wskd~~i~e~v~~ayk 603 (1251)
T KOG0414|consen 568 CKQFGIDGAEFGIRKMLPLV------WSKDKEIREAVENAYK 603 (1251)
T ss_pred HHHhCCCcHHHHHHHHhhhh------hCCCccHHHHHHHHHH
Confidence 34444566666677776644 4555556666666653
No 475
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.25 E-value=6e+02 Score=25.20 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC
Q 043191 358 DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393 (414)
Q Consensus 358 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 393 (414)
+......++.++. .|+...++.+++++.+.|..|.
T Consensus 250 ~~~~i~~LldaL~-~~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 250 DRSHVFRLIDALA-QGDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 4444555666555 4889999999999999887654
No 476
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=27.06 E-value=67 Score=20.40 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=11.0
Q ss_pred ChHHHHHHHHHHHcCC
Q 043191 210 HTIVALNLFEEMANGN 225 (414)
Q Consensus 210 ~~~~a~~~~~~m~~~~ 225 (414)
+++.|...|.++...+
T Consensus 40 d~~~Al~~F~~lk~~~ 55 (63)
T smart00804 40 DYERALKNFTELKSEG 55 (63)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 5667777777776655
No 477
>COG0819 TenA Putative transcription activator [Transcription]
Probab=26.94 E-value=3.5e+02 Score=22.46 Aligned_cols=105 Identities=13% Similarity=0.035 Sum_probs=0.0
Q ss_pred HhchhCCCCCCHhhHHHHHHHHHhcCChhhhhh-----hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043191 307 QSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH-----YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381 (414)
Q Consensus 307 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~-----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 381 (414)
+++.+....|....|+..|-..+..|++.+... +....++...+.+....+....|..-|+.|+...-.+.+.++
T Consensus 98 ~~~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~ 177 (218)
T COG0819 98 DELLKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEEFQEAVEEL 177 (218)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHHHHHHHHHH
Q ss_pred HHhhhhCCCCCCHHHHHHHHHHHHHcCCcc
Q 043191 382 FGRILPSCFTPDAVTFTSLIKILEINSFFR 411 (414)
Q Consensus 382 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 411 (414)
.+.+-+.+-.-+..-+..|...+...-++|
T Consensus 178 ~~~ld~~~~~~~~~~~~~l~~iF~~ss~~E 207 (218)
T COG0819 178 EALLDSLAENSSEEELEKLKQIFLTASRFE 207 (218)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
No 478
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.81 E-value=8.2e+02 Score=26.32 Aligned_cols=155 Identities=13% Similarity=0.038 Sum_probs=89.0
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCC----------------------CCC---C--HhhHHHHHHHHHhcCChhHHHHHHHH
Q 043191 63 GDITSITPNEALCVFDYMLNMRP----------------------SRP---P--VTSFNILFGCLAKTKHYDTVLSLFKR 115 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~~----------------------~~~---~--~~~~~~li~~~~~~~~~~~a~~~~~~ 115 (414)
.++.+|.+.+|+..|......-+ ..| . ..-|-.+++.+-+.+-.+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 36788999999999987653111 011 1 22356777777777777777777655
Q ss_pred HHhC-CC-CCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH------------HH
Q 043191 116 LNLT-GL-FPD-RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME------------AA 180 (414)
Q Consensus 116 m~~~-g~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~------------a~ 180 (414)
..+. +. .|+ ..+++++.+.+...|.+.+|.+.+-.--. ...-..+..-++..+..+|+++. ..
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve 1086 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVE 1086 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHH
Confidence 5543 11 122 34567777777788877777655433211 11123456677778888887653 33
Q ss_pred H-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043191 181 A-LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFE 219 (414)
Q Consensus 181 ~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 219 (414)
. +++..-....-.....|+.|-.-+...+++.+|-.+.-
T Consensus 1087 ~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1087 DFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 3 22222222111223346666666677888887766543
No 479
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.80 E-value=3.1e+02 Score=25.33 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=58.2
Q ss_pred HHHHHHhcCChhHHHHHHHhchh-------CCCCC-----CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC---
Q 043191 289 LIDGLCKISKLKIARELFQSLPR-------AGLMP-----NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST--- 353 (414)
Q Consensus 289 li~~~~~~~~~~~a~~~~~~m~~-------~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~--- 353 (414)
++..+....++.+.++..+.... .|..| .-.+...|++.++-.|++..|.+ +++.+.-.
T Consensus 81 vL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk------~l~~idl~~~~ 154 (404)
T PF10255_consen 81 VLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALK------VLENIDLNKKG 154 (404)
T ss_pred HHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHH------HhhccCcccch
Confidence 44455555666655555544211 12221 12345667888999999998888 66665421
Q ss_pred ---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 043191 354 ---GLF-PDLYTYNILINCFCKIGRVSSGFVIFGRIL 386 (414)
Q Consensus 354 ---~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 386 (414)
.+. ..+.+|-.+.-+|.-.+++.+|.++|...+
T Consensus 155 l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 155 LYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 234567777788999999999999998765
No 480
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=26.24 E-value=2.2e+02 Score=19.54 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=34.8
Q ss_pred HHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCC
Q 043191 80 MLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGR 140 (414)
Q Consensus 80 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 140 (414)
-...+| .|...--.+...+...|++++|++.+-.+.+..-.. +...-..++..+.-.|.
T Consensus 14 ~~a~~P--~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 14 ALAANP--DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 334444 566777778888888888888888887777553222 33344455555555544
No 481
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=26.19 E-value=1.8e+02 Score=27.26 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=46.4
Q ss_pred hcCChhHHHHHHHhchhCCCCCCHhhH-HHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 043191 295 KISKLKIARELFQSLPRAGLMPNVVTY-NILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD-LYTYNILINCFCKI 372 (414)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 372 (414)
+.+.++.|..++.+.++. .||...| ..=-.++.+.+++..|.. =.....+.. |+ ...|-.=..+|.+.
T Consensus 16 ~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~------Da~kaie~d--P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALH------DALKAIELD--PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred ccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHH------HHHhhhhcC--chhhheeeeccHHHHhH
Confidence 335566666666666553 3333322 222245556666555544 333333321 21 12222222344445
Q ss_pred CCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHH
Q 043191 373 GRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406 (414)
Q Consensus 373 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 406 (414)
+.+.+|...|+.-.. +.|+..-....+.-|-+
T Consensus 86 ~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 555555555555544 45555555555554443
No 482
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=26.13 E-value=4.4e+02 Score=24.45 Aligned_cols=113 Identities=12% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHH
Q 043191 181 ALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSC 260 (414)
Q Consensus 181 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~ 260 (414)
++|..+.+..+.||...+..+...|.+.=-++-|.++++-....|
T Consensus 460 ~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdg----------------------------------- 504 (586)
T KOG2223|consen 460 KLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDG----------------------------------- 504 (586)
T ss_pred HHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecc-----------------------------------
Q ss_pred HhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHh
Q 043191 261 MASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN 330 (414)
Q Consensus 261 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 330 (414)
..--+..+..++++-+....+.-+..++..+.+...--.+.++|..+.-.-..-...-|..++...-+
T Consensus 505 --eeFlfr~~lgIlklyepkLl~mDf~~~~qfLtklp~dL~~eelF~~i~~~~~~sr~kkwsqvf~~i~k 572 (586)
T KOG2223|consen 505 --EEFLFRTALGILKLYEPKLLVMDFIHVAQFLTKLPEDLTPEELFMHIAYIQMQSRSKKWSQVFQEIDK 572 (586)
T ss_pred --hHHHHHHHHHHHHHccchHhhhhHHHHHHHHHhCcccCCHHHHHHHHHHHhhhhhchhHHHHHHHHHh
No 483
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=25.70 E-value=1.8e+02 Score=19.01 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=16.4
Q ss_pred cCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043191 138 MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170 (414)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 170 (414)
.++.+.+.+++++..+.|..|.....+.+..+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345555555555555555555444444444443
No 484
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.67 E-value=67 Score=28.48 Aligned_cols=94 Identities=14% Similarity=0.024 Sum_probs=67.4
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHH
Q 043191 100 LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA-VTFTSLIKDLCAESRIME 178 (414)
Q Consensus 100 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~ 178 (414)
....|.++.|++.|...+..+ .+....|..--+++.+.++...|+.=+....+.+ ||. .-|-.--.+....|+|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHH
Confidence 345788999999999887764 3466667777778888899999988887777653 333 234333344555789999
Q ss_pred HHHHHHHHHHcCCCCCHH
Q 043191 179 AAALFTKLRVFGCELDVF 196 (414)
Q Consensus 179 a~~~~~~m~~~g~~~~~~ 196 (414)
|...|....+.+..+...
T Consensus 201 aa~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHHHhccccHHHH
Confidence 999999988887654443
No 485
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=25.36 E-value=2.9e+02 Score=20.57 Aligned_cols=111 Identities=23% Similarity=0.257 Sum_probs=57.3
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----C----
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM----G---- 139 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----~---- 139 (414)
.++.-|.+++.+.... + .+...++.+.+..-.-.+.++.+++....-.|.... +..+.-|.+. .
T Consensus 3 nNp~IA~~~l~~l~~s----~---~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl-~~yI~~cI~~ce~~kd~~~ 74 (126)
T PF10155_consen 3 NNPNIAIEILVKLINS----P---NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFL-HMYISNCIKSCESIKDKYM 74 (126)
T ss_pred CcHHHHHHHHHHHcCC----c---hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHH-HHHHHHHHHHHHhhccccc
Confidence 4556666666665321 2 256666666777766777777777776554444332 2222222211 1
Q ss_pred ---CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043191 140 ---RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186 (414)
Q Consensus 140 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 186 (414)
.....-.++..+.+.++.-....+.-+=..|.+-.+..||-.+|+-+
T Consensus 75 q~R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 75 QNRLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred ccchhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 11122233444555555444444555555555556666666666554
No 486
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=25.18 E-value=1.3e+02 Score=20.26 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHc
Q 043191 357 PDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEIN 407 (414)
Q Consensus 357 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 407 (414)
|++.....++..+.. ++++++...+.++...|+.+ ......+...+...
T Consensus 3 p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~-~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCLN-GDFKEARKKLYELLVEGYSA-SDILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--H-HHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHh
Confidence 445555666665544 58899999888888887654 34445555555544
No 487
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=24.72 E-value=2.8e+02 Score=20.18 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=50.1
Q ss_pred hhHHHHHHHhchhCCCCCCHhhHHHHHHHHHh-cCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043191 299 LKIARELFQSLPRAGLMPNVVTYNILIRGLCN-DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377 (414)
Q Consensus 299 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 377 (414)
.+.+..+++.+.+.|..-|.......+....+ .+.-. .. +-.++...|+.++ .....+. .....+.
T Consensus 8 ~e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~G~--~~------I~~~L~~kGi~~~--~i~~~l~---~~~~~e~ 74 (121)
T PF02631_consen 8 EEAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGKGP--RR------IRQKLKQKGIDRE--IIEEALE---EYDEEEE 74 (121)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT--H--HH------HHHHHHHTT--HH--HHHHHHT---CS-HHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccccH--HH------HHHHHHHHCCChH--HHHHHHH---HhhHHHH
Confidence 34566778888888877566655666776665 33322 22 7777888887533 2222222 2222334
Q ss_pred HHHHHHhhhhCC-CCCCHHHHHHHHHHHHHcC
Q 043191 378 GFVIFGRILPSC-FTPDAVTFTSLIKILEINS 408 (414)
Q Consensus 378 a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g 408 (414)
|..+.++-.... -.++.....-++..+.+.|
T Consensus 75 a~~~~~kk~~~~~~~~~~~~~~K~~~~L~rrG 106 (121)
T PF02631_consen 75 ALELAEKKYRRYRKPSDRKRKQKLIRFLMRRG 106 (121)
T ss_dssp HHHHHHHHHHHTTTS-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 555544433332 2355666666666666655
No 488
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=24.60 E-value=2.1e+02 Score=18.80 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=17.5
Q ss_pred CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 043191 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE 173 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 173 (414)
+.+.|..++..+.... +.++..||++.+.+.+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4455555555554332 44666666665555443
No 489
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.42 E-value=6.3e+02 Score=24.13 Aligned_cols=100 Identities=14% Similarity=0.007 Sum_probs=58.3
Q ss_pred HHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchh
Q 043191 178 EAAALFTKL-RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFL 256 (414)
Q Consensus 178 ~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~ 256 (414)
+..+.+++. ...|+..+......+.. ...|+.-.|+.++++....+ ....++..+...+..
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--------~~~it~~~V~~~lg~-------- 245 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--------DSKLTGVKIRKMIGY-------- 245 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--------CCCcCHHHHHHHhCC--------
Confidence 344444443 33567667776666554 35688999999998865422 112344443333211
Q ss_pred HHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHh
Q 043191 257 GFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319 (414)
Q Consensus 257 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 319 (414)
.+...+..++.+....+....|+.++++|.+.|..|...
T Consensus 246 ------------------------~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 246 ------------------------HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred ------------------------CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 122223445555555555678999999999998876543
No 490
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=23.98 E-value=6.6e+02 Score=24.25 Aligned_cols=64 Identities=13% Similarity=0.236 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH---HHHHHHHhcCCcchHHHHHHHHHHcCCCC
Q 043191 93 FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN---ILINCFCKMGRVSHGFVVLGRILRSCFTP 158 (414)
Q Consensus 93 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (414)
...++.-|.+.+++++|+.++..|.=.-. ....|. .+.+.+.+..--++....++.+...=+.|
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~--g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap 477 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTM--GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAP 477 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCcccc--HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCC
Confidence 34677789999999999999988863311 233343 33344444443455555566665543333
No 491
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=23.83 E-value=3.1e+02 Score=20.34 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=43.2
Q ss_pred CHhhHHHHHHHHHhcCChhhhhh-hhhHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHhh
Q 043191 317 NVVTYNILIRGLCNDGQMDETKH-YETVFLLFKRLNSTGLFPDLYTYNILI----NCFCKIGRVSSGFVIFGRI 385 (414)
Q Consensus 317 ~~~~~~~li~~~~~~g~~~~a~~-~~~a~~~~~~m~~~~~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~m 385 (414)
|..++..|-.++...|++++++. .+.++.+|++--+.. +-.-..|-..+ .++-..|+.++|..-|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~-qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH-QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT-STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 45667788889999999999866 456666777655432 11234443333 3566789999999888743
No 492
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.49 E-value=2.4e+02 Score=18.99 Aligned_cols=25 Identities=24% Similarity=0.118 Sum_probs=14.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 043191 166 LIKDLCAESRIMEAAALFTKLRVFG 190 (414)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~g 190 (414)
+++.+.+|.--++|+++++-|.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3445555555666666666665555
No 493
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=23.40 E-value=1.4e+02 Score=23.16 Aligned_cols=20 Identities=0% Similarity=-0.132 Sum_probs=12.2
Q ss_pred HHhcCCcchHHHHHHHHHHc
Q 043191 135 FCKMGRVSHGFVVLGRILRS 154 (414)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~ 154 (414)
..+.++++.|.++...+...
T Consensus 100 aL~~~d~~~A~~Ih~~L~t~ 119 (157)
T PF07304_consen 100 ALQARDYDAADEIHVDLMTD 119 (157)
T ss_dssp HHHHT-HHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 34566777777777776643
No 494
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.31 E-value=5.1e+02 Score=22.70 Aligned_cols=100 Identities=12% Similarity=0.143 Sum_probs=65.7
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHH----cCCCCCHHhHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--
Q 043191 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILR----SCFTPDAVTFTS-LIKDLCAESRIMEAAALFTKLRVFGCELDV-- 195 (414)
Q Consensus 123 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-- 195 (414)
--...+..+..-|++.++.+.+.++..+..+ .|.+.|+...-+ |.-.|....-+++-++..+.|.+.|..-+.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 3456777888899999999999887766654 466666654433 223355555678888888999988854332
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 196 --FTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 196 --~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
-+|.-+. +....++.+|-.+|-+....
T Consensus 193 RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 193 RYKVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 2333322 22345678888888777654
No 495
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=23.18 E-value=6.5e+02 Score=26.53 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=24.0
Q ss_pred cccHHHHHHHHHhcC--ChhHHHHHHHhchhC
Q 043191 283 CLNFLCLIDGLCKIS--KLKIARELFQSLPRA 312 (414)
Q Consensus 283 ~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~ 312 (414)
......++.+|++.+ ++++|+.+..++++.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 444667888898888 889999999888865
No 496
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=23.03 E-value=4.4e+02 Score=21.80 Aligned_cols=98 Identities=14% Similarity=0.092 Sum_probs=56.1
Q ss_pred cCChhHHHHHHHhch----hCCCCCCHh--hHHHHHHHHHhcCChhhhhh-hhhHHHHHHHHHhCCCCC----CH-HHHH
Q 043191 296 ISKLKIARELFQSLP----RAGLMPNVV--TYNILIRGLCNDGQMDETKH-YETVFLLFKRLNSTGLFP----DL-YTYN 363 (414)
Q Consensus 296 ~~~~~~a~~~~~~m~----~~g~~p~~~--~~~~li~~~~~~g~~~~a~~-~~~a~~~~~~m~~~~~~p----~~-~~~~ 363 (414)
...+++|.+.|.-.. -.+..|... .+--+...|...|+-+.... +..|++.|.+..+..-.| +. ...-
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 345666666555432 122333332 33334445666666333222 466777888877653222 22 3333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhhCCCCCC
Q 043191 364 ILINCFCKIGRVSSGFVIFGRILPSCFTPD 393 (414)
Q Consensus 364 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 393 (414)
.+.....+.|+.++|.+.|.+++..+-...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 444567789999999999999998754333
No 497
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=23.00 E-value=6.7e+02 Score=24.16 Aligned_cols=91 Identities=13% Similarity=0.156 Sum_probs=54.3
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH---------------
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI--------------- 130 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--------------- 130 (414)
+.=+.++-...++.+.......-+..++..+. ....|...+++.+++++...|- +..++..
T Consensus 176 kri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia--~~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~~~ 251 (515)
T COG2812 176 KRLDLEEIAKHLAAILDKEGINIEEDALSLIA--RAAEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKLLS 251 (515)
T ss_pred cCCCHHHHHHHHHHHHHhcCCccCHHHHHHHH--HHcCCChhhHHHHHHHHHHccC--CcccHHHHHHHhCCCCHHHHHH
Confidence 33345666666666665544244544444443 3557788899999998876642 1122211
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCCCHH
Q 043191 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161 (414)
Q Consensus 131 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (414)
++. ....++...++..++++.+.|..|...
T Consensus 252 ~~~-~i~~~d~~~~~~~~~~l~~~G~~~~~~ 281 (515)
T COG2812 252 LLE-AILKGDAKEALRLINELIEEGKDPEAF 281 (515)
T ss_pred HHH-HHHccCHHHHHHHHHHHHHhCcCHHHH
Confidence 222 234577888888888888888766543
No 498
>PRK14700 recombination factor protein RarA; Provisional
Probab=23.00 E-value=5.2e+02 Score=22.72 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHh---cCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCC
Q 043191 126 YTYNILINCFCK---MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR-----IMEAAALFTKLRVFGCE 192 (414)
Q Consensus 126 ~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~~ 192 (414)
..+..+|+++.+ -.+.+.|+-.+.+|++.|-.|....-..++.++-..|. ...|...++.....|++
T Consensus 124 d~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 124 KEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred chhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 334446777755 46899999999999999988877777777777777774 34566666666667753
No 499
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.94 E-value=8.4e+02 Score=25.08 Aligned_cols=88 Identities=11% Similarity=0.071 Sum_probs=49.4
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC---C----------CCCHhhHHHHHHHH
Q 043191 69 TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG---L----------FPDRYTYNILINCF 135 (414)
Q Consensus 69 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~----------~p~~~~~~~li~~~ 135 (414)
..++..+.++.+.......-+......+.+ ...|+...|+.++++....+ + ..+...+..++.++
T Consensus 179 s~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL 256 (830)
T PRK07003 179 PAGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL 256 (830)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345556666665443221334444444433 34677888888776644321 1 12333344455544
Q ss_pred HhcCCcchHHHHHHHHHHcCCCCC
Q 043191 136 CKMGRVSHGFVVLGRILRSCFTPD 159 (414)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~ 159 (414)
..++...++.+++++...|+...
T Consensus 257 -~~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 257 -AAGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred -HcCCHHHHHHHHHHHHHhCCCHH
Confidence 44788888888888888776543
No 500
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=22.79 E-value=37 Score=31.33 Aligned_cols=273 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 043191 97 FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176 (414)
Q Consensus 97 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 176 (414)
+.+.+-.|.++-+..+++.- ..+.-+..|-++=+++.|--|+++-...+++.=..-. .+|..-.+.|+-++.+..
T Consensus 88 LWaAsaAGHl~vVk~L~~~g--a~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~-IanrhGhTcLmIa~ykGh-- 162 (615)
T KOG0508|consen 88 LWAASAAGHLEVVKLLLRRG--ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPE-IANRHGHTCLMIACYKGH-- 162 (615)
T ss_pred hhHHhccCcHHHHHHHHHhc--CccccccccCCccHHHHHhcchhHHHHHHHHcCCCCc-ccccCCCeeEEeeeccCc--
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCc
Q 043191 177 MEAAALFTKLRVFGCELDVFTY--NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSAN 254 (414)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 254 (414)
.++.+.+.+.|..++..++ |+-+.-|+.+|.++-...++..-.. +..|..-.+.++.+-..
T Consensus 163 ---~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~--------i~~d~~GmtPL~~Aa~t------ 225 (615)
T KOG0508|consen 163 ---VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAK--------IDVDGHGMTPLLLAAVT------ 225 (615)
T ss_pred ---hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCce--------eeecCCCCchHHHHhhh------
Q ss_pred hhHHHHHhhccchhhHhhhhh-hhhhccccccHHHHHHHHH-hcCChhHHHHHHHhchhCCCC-----CCHhhHHHHHHH
Q 043191 255 FLGFSCMASFSALNKMAFYFP-LVRVQCLCLNFLCLIDGLC-KISKLKIARELFQSLPRAGLM-----PNVVTYNILIRG 327 (414)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~-----p~~~~~~~li~~ 327 (414)
|..+....+.. ......-......+-..|. +..+.-.|...|.+..+.... +...+. ..+.+
T Consensus 226 ----------G~~~iVe~L~~~~~sr~~riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~-~p~~a 294 (615)
T KOG0508|consen 226 ----------GHTDIVERLLQCETSRESRIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPL-EPVLA 294 (615)
T ss_pred ----------cchHHHHHHhcCCcchhhHHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCC-Cchhh
Q ss_pred HHhcCChhhhhhhhhHHHHHHHHHhCCC----------CCCHHHHHHHHHH-HHhcCCHHHHHHHHHhhhhCCCC----C
Q 043191 328 LCNDGQMDETKHYETVFLLFKRLNSTGL----------FPDLYTYNILINC-FCKIGRVSSGFVIFGRILPSCFT----P 392 (414)
Q Consensus 328 ~~~~g~~~~a~~~~~a~~~~~~m~~~~~----------~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~----p 392 (414)
|..........++|+-..=.+.|.-..+ .||...|-..-.+ |+..|+++..+++|...++..-+ .
T Consensus 295 y~~~re~~~~~elE~lv~D~d~~RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~Pl 374 (615)
T KOG0508|consen 295 YGYGREVNNREELEELVEDPDEMRMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPL 374 (615)
T ss_pred hhhhhhcCCHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCC
Q ss_pred CHHHHHHHHH
Q 043191 393 DAVTFTSLIK 402 (414)
Q Consensus 393 ~~~~~~~li~ 402 (414)
+..|-.+++.
T Consensus 375 spmT~sslls 384 (615)
T KOG0508|consen 375 SPMTASSLLS 384 (615)
T ss_pred CcccHHHHHH
Done!