Query 043191
Match_columns 414
No_of_seqs 562 out of 2078
Neff 11.4
Searched_HMMs 29240
Date Tue Mar 26 00:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.2E-34 1.1E-38 265.3 25.2 211 71-334 7-226 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.5E-34 8.6E-39 266.1 22.5 208 142-408 7-224 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.7E-28 5.9E-33 235.4 28.4 313 65-413 211-569 (597)
4 2xpi_A Anaphase-promoting comp 100.0 4.8E-27 1.6E-31 225.4 32.1 311 57-404 275-594 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 4.8E-23 1.6E-27 186.8 36.1 310 66-413 45-358 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.6E-22 5.3E-27 183.4 33.5 312 66-413 11-324 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 5E-21 1.7E-25 176.9 34.9 300 66-403 38-372 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 8.3E-21 2.8E-25 175.5 31.1 304 73-413 11-348 (450)
9 3ieg_A DNAJ homolog subfamily 99.8 1.4E-17 4.7E-22 148.7 35.2 307 65-408 14-354 (359)
10 2gw1_A Mitochondrial precursor 99.8 1.1E-18 3.8E-23 163.9 29.2 328 65-413 17-468 (514)
11 3hym_B Cell division cycle pro 99.8 2.8E-17 9.5E-22 145.1 31.8 277 67-410 35-321 (330)
12 3spa_A Mtrpol, DNA-directed RN 99.8 8.9E-21 3E-25 181.0 8.2 122 282-409 126-251 (1134)
13 3spa_A Mtrpol, DNA-directed RN 99.8 8.8E-21 3E-25 181.1 6.4 151 89-250 126-286 (1134)
14 3ieg_A DNAJ homolog subfamily 99.8 6.2E-17 2.1E-21 144.5 31.0 291 89-413 2-325 (359)
15 1fch_A Peroxisomal targeting s 99.8 3.4E-18 1.2E-22 153.5 22.6 283 68-413 39-349 (368)
16 3fp2_A TPR repeat-containing p 99.8 2.3E-17 7.8E-22 155.9 29.1 328 65-413 36-481 (537)
17 2gw1_A Mitochondrial precursor 99.8 1.9E-16 6.5E-21 148.7 29.9 309 66-394 51-482 (514)
18 3hym_B Cell division cycle pro 99.8 9.8E-17 3.4E-21 141.5 26.0 261 87-413 19-289 (330)
19 4eqf_A PEX5-related protein; a 99.8 2.1E-17 7E-22 148.4 21.1 259 88-413 63-346 (365)
20 3cv0_A Peroxisome targeting si 99.8 1.3E-16 4.5E-21 140.5 23.8 256 66-387 33-314 (327)
21 4eqf_A PEX5-related protein; a 99.8 6.7E-17 2.3E-21 145.0 21.9 255 66-385 77-353 (365)
22 3mkr_A Coatomer subunit epsilo 99.8 1E-16 3.4E-21 138.7 21.7 251 66-387 11-263 (291)
23 1fch_A Peroxisomal targeting s 99.8 2.9E-16 9.9E-21 140.9 24.7 255 66-386 76-357 (368)
24 3cv0_A Peroxisome targeting si 99.7 6.8E-16 2.3E-20 135.9 24.4 269 127-413 23-305 (327)
25 1b89_A Protein (clathrin heavy 99.7 9E-18 3.1E-22 148.9 12.0 239 66-406 15-253 (449)
26 3fp2_A TPR repeat-containing p 99.7 9.7E-16 3.3E-20 144.7 25.3 298 89-413 24-397 (537)
27 3mkr_A Coatomer subunit epsilo 99.7 1.3E-14 4.4E-19 125.4 21.4 241 97-412 6-252 (291)
28 3uq3_A Heat shock protein STI1 99.7 3.6E-14 1.2E-18 120.3 23.2 226 90-388 5-236 (258)
29 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.6E-14 5.4E-19 123.9 19.2 251 63-382 14-269 (275)
30 2xm6_A Protein corresponding t 99.6 5.8E-12 2E-16 117.5 37.9 312 65-413 54-422 (490)
31 2xm6_A Protein corresponding t 99.6 5.8E-12 2E-16 117.5 37.7 305 72-413 25-386 (490)
32 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.5E-14 1.9E-18 120.5 19.9 244 101-413 16-265 (275)
33 3u4t_A TPR repeat-containing p 99.6 5.2E-13 1.8E-17 114.2 23.8 248 91-404 4-265 (272)
34 2pl2_A Hypothetical conserved 99.6 1.2E-13 4.1E-18 114.0 18.8 200 123-387 3-213 (217)
35 1b89_A Protein (clathrin heavy 99.6 4.8E-15 1.6E-19 131.5 10.9 268 56-388 34-308 (449)
36 2ho1_A Type 4 fimbrial biogene 99.6 1.6E-12 5.6E-17 109.8 26.1 132 90-223 37-169 (252)
37 2q7f_A YRRB protein; TPR, prot 99.6 2.1E-13 7.2E-18 114.5 19.9 193 61-313 30-223 (243)
38 1ouv_A Conserved hypothetical 99.6 6.6E-12 2.2E-16 107.5 28.6 225 88-389 4-252 (273)
39 3uq3_A Heat shock protein STI1 99.6 3.5E-13 1.2E-17 114.1 20.4 216 125-413 5-226 (258)
40 2pl2_A Hypothetical conserved 99.6 6.4E-13 2.2E-17 109.6 21.3 200 87-351 2-212 (217)
41 2ho1_A Type 4 fimbrial biogene 99.6 1.7E-12 5.7E-17 109.7 24.4 160 62-225 45-205 (252)
42 2vq2_A PILW, putative fimbrial 99.6 1.7E-12 5.7E-17 107.5 23.8 133 89-223 7-141 (225)
43 2h6f_A Protein farnesyltransfe 99.6 1.7E-12 5.9E-17 116.0 25.3 250 89-406 96-365 (382)
44 2ooe_A Cleavage stimulation fa 99.6 1.5E-11 5.3E-16 115.8 33.3 314 67-413 25-482 (530)
45 2vq2_A PILW, putative fimbrial 99.6 2.1E-12 7.2E-17 106.9 23.5 154 66-223 20-175 (225)
46 2h6f_A Protein farnesyltransfe 99.5 8.7E-12 3E-16 111.4 28.2 241 66-370 109-364 (382)
47 3u4t_A TPR repeat-containing p 99.5 2E-12 6.9E-17 110.5 23.1 235 65-324 14-261 (272)
48 2q7f_A YRRB protein; TPR, prot 99.5 8.4E-13 2.9E-17 110.8 20.3 202 87-353 20-222 (243)
49 4g1t_A Interferon-induced prot 99.5 8.6E-12 3E-16 115.7 28.0 318 66-414 63-450 (472)
50 3sf4_A G-protein-signaling mod 99.5 3.3E-13 1.1E-17 122.4 16.8 293 66-412 21-365 (406)
51 4g1t_A Interferon-induced prot 99.5 2.1E-11 7.2E-16 113.0 29.2 305 87-413 48-391 (472)
52 4a1s_A PINS, partner of inscut 99.5 5.8E-13 2E-17 121.2 17.5 268 65-388 59-372 (411)
53 1ouv_A Conserved hypothetical 99.5 7.4E-11 2.5E-15 100.9 28.2 213 124-413 5-241 (273)
54 1xi4_A Clathrin heavy chain; a 99.5 3.1E-11 1.1E-15 119.8 28.2 269 64-407 1059-1327(1630)
55 2ooe_A Cleavage stimulation fa 99.5 4.8E-11 1.6E-15 112.4 28.5 141 77-223 2-158 (530)
56 3ro2_A PINS homolog, G-protein 99.5 1.4E-12 4.9E-17 114.8 16.9 267 66-388 17-332 (338)
57 2ond_A Cleavage stimulation fa 99.4 7.1E-11 2.4E-15 103.0 24.9 217 71-353 33-270 (308)
58 3nf1_A KLC 1, kinesin light ch 99.4 1.9E-12 6.6E-17 112.8 14.8 247 88-387 25-306 (311)
59 4a1s_A PINS, partner of inscut 99.4 1.7E-12 6E-17 118.1 14.8 269 90-413 48-362 (411)
60 2ond_A Cleavage stimulation fa 99.4 2.1E-10 7.2E-15 100.0 27.0 218 107-388 33-270 (308)
61 3sf4_A G-protein-signaling mod 99.4 4.3E-12 1.5E-16 115.1 16.8 272 87-413 6-326 (406)
62 4abn_A Tetratricopeptide repea 99.4 2.3E-11 7.8E-16 112.7 20.1 212 70-339 84-313 (474)
63 3vtx_A MAMA; tetratricopeptide 99.4 6.3E-11 2.2E-15 94.8 20.0 153 66-223 17-169 (184)
64 1xi4_A Clathrin heavy chain; a 99.4 4.1E-10 1.4E-14 112.0 28.5 279 66-413 1088-1374(1630)
65 3ro2_A PINS homolog, G-protein 99.4 5.2E-12 1.8E-16 111.1 14.2 268 91-413 6-322 (338)
66 3nf1_A KLC 1, kinesin light ch 99.4 1E-11 3.6E-16 108.1 15.8 157 66-223 39-223 (311)
67 3ulq_A Response regulator aspa 99.4 2.6E-11 8.9E-16 109.3 18.1 294 66-387 24-367 (383)
68 4abn_A Tetratricopeptide repea 99.4 2.8E-11 9.6E-16 112.1 18.6 215 105-385 83-318 (474)
69 3vtx_A MAMA; tetratricopeptide 99.4 2E-10 6.7E-15 91.9 20.7 166 159-387 4-169 (184)
70 1hz4_A MALT regulatory protein 99.3 1E-09 3.6E-14 98.3 25.6 291 66-411 26-353 (373)
71 3as5_A MAMA; tetratricopeptide 99.3 7.9E-11 2.7E-15 94.0 15.6 153 66-223 20-172 (186)
72 3edt_B KLC 2, kinesin light ch 99.3 1.3E-10 4.3E-15 99.6 16.2 236 67-311 14-280 (283)
73 3as5_A MAMA; tetratricopeptide 99.3 8.3E-10 2.8E-14 87.9 19.3 132 90-224 8-139 (186)
74 3edt_B KLC 2, kinesin light ch 99.2 2E-10 6.7E-15 98.4 14.3 241 101-388 12-281 (283)
75 1hz4_A MALT regulatory protein 99.2 2.5E-09 8.4E-14 95.9 21.7 266 93-413 17-312 (373)
76 1qqe_A Vesicular transport pro 99.2 3.4E-09 1.2E-13 91.5 21.4 238 72-387 3-268 (292)
77 4gyw_A UDP-N-acetylglucosamine 99.2 1E-09 3.5E-14 105.9 19.6 130 90-223 9-139 (723)
78 4gyw_A UDP-N-acetylglucosamine 99.2 7.8E-10 2.7E-14 106.8 18.7 152 66-223 21-173 (723)
79 3ulq_A Response regulator aspa 99.2 1.2E-09 4.2E-14 98.2 18.8 234 96-352 109-367 (383)
80 4i17_A Hypothetical protein; T 99.2 6.5E-09 2.2E-13 86.1 21.6 196 88-313 5-210 (228)
81 2fo7_A Synthetic consensus TPR 99.2 2.2E-09 7.5E-14 80.4 16.7 130 91-223 2-131 (136)
82 4i17_A Hypothetical protein; T 99.2 3.2E-09 1.1E-13 87.9 18.3 153 65-223 18-208 (228)
83 3e4b_A ALGK; tetratricopeptide 99.1 8.1E-09 2.8E-13 94.9 21.7 280 66-389 47-352 (452)
84 3e4b_A ALGK; tetratricopeptide 99.1 2.3E-08 7.8E-13 91.9 24.3 279 68-390 88-389 (452)
85 3q15_A PSP28, response regulat 99.1 6.4E-09 2.2E-13 93.4 19.5 300 88-413 8-355 (378)
86 3q15_A PSP28, response regulat 99.1 1.2E-08 4.1E-13 91.6 19.3 161 65-225 112-291 (378)
87 3mv2_B Coatomer subunit epsilo 99.1 6.1E-08 2.1E-12 82.5 21.9 241 67-353 26-282 (310)
88 3urz_A Uncharacterized protein 99.0 5.8E-09 2E-13 85.1 13.7 163 65-241 15-195 (208)
89 2vsy_A XCC0866; transferase, g 99.0 1.6E-08 5.3E-13 96.1 18.1 154 67-225 2-158 (568)
90 2fo7_A Synthetic consensus TPR 99.0 4.2E-08 1.4E-12 73.2 16.3 97 126-224 2-98 (136)
91 3qky_A Outer membrane assembly 99.0 3.4E-08 1.2E-12 83.6 17.3 158 66-224 27-224 (261)
92 1qqe_A Vesicular transport pro 99.0 3.5E-08 1.2E-12 85.1 17.6 222 107-405 2-249 (292)
93 2pzi_A Probable serine/threoni 99.0 1.3E-08 4.3E-13 98.6 16.1 168 65-246 402-578 (681)
94 3qky_A Outer membrane assembly 99.0 5.3E-08 1.8E-12 82.4 18.0 199 158-413 13-251 (261)
95 2r5s_A Uncharacterized protein 99.0 7.7E-09 2.6E-13 81.9 11.8 153 66-223 18-172 (176)
96 3dra_A Protein farnesyltransfe 98.9 3.5E-06 1.2E-10 72.3 28.9 170 68-249 47-233 (306)
97 2pzi_A Probable serine/threoni 98.9 2.2E-08 7.4E-13 97.0 15.9 177 101-336 402-586 (681)
98 3urz_A Uncharacterized protein 98.9 6.3E-08 2.1E-12 78.9 16.2 113 90-206 4-133 (208)
99 3qou_A Protein YBBN; thioredox 98.9 3.2E-08 1.1E-12 85.1 14.9 154 65-223 128-283 (287)
100 4ga2_A E3 SUMO-protein ligase 98.9 1.5E-08 5.2E-13 77.8 11.5 141 65-210 8-149 (150)
101 2ifu_A Gamma-SNAP; membrane fu 98.9 5E-08 1.7E-12 84.8 16.1 204 66-351 3-222 (307)
102 2ifu_A Gamma-SNAP; membrane fu 98.9 5.7E-07 1.9E-11 78.1 21.3 144 63-223 24-183 (307)
103 3mv2_B Coatomer subunit epsilo 98.8 3.5E-07 1.2E-11 77.8 18.8 193 88-313 69-283 (310)
104 2yhc_A BAMD, UPF0169 lipoprote 98.8 2E-07 7E-12 76.9 16.8 156 65-225 15-214 (225)
105 2yhc_A BAMD, UPF0169 lipoprote 98.8 4.9E-07 1.7E-11 74.6 18.2 172 89-314 3-215 (225)
106 4ga2_A E3 SUMO-protein ligase 98.8 4.3E-08 1.5E-12 75.2 10.7 141 96-248 3-146 (150)
107 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5.6E-07 1.9E-11 73.3 18.0 130 91-225 7-151 (213)
108 3rjv_A Putative SEL1 repeat pr 98.8 8.7E-07 3E-11 72.3 19.0 143 71-224 3-158 (212)
109 3dra_A Protein farnesyltransfe 98.8 1E-05 3.5E-10 69.4 26.2 225 105-388 48-287 (306)
110 3rjv_A Putative SEL1 repeat pr 98.8 7.8E-07 2.7E-11 72.6 17.9 182 142-390 3-199 (212)
111 3qou_A Protein YBBN; thioredox 98.8 4.4E-07 1.5E-11 77.9 16.9 168 157-386 114-282 (287)
112 2e2e_A Formate-dependent nitri 98.8 1.2E-07 4.1E-12 74.9 12.4 125 62-190 18-145 (177)
113 4e6h_A MRNA 3'-END-processing 98.7 9.8E-06 3.3E-10 77.5 27.1 142 263-412 355-522 (679)
114 2r5s_A Uncharacterized protein 98.7 1.1E-07 3.6E-12 75.2 11.7 60 163-223 9-68 (176)
115 3q7a_A Farnesyltransferase alp 98.7 3E-05 1E-09 67.3 27.6 170 68-249 68-255 (349)
116 2vsy_A XCC0866; transferase, g 98.7 2.6E-07 8.9E-12 87.7 16.1 119 103-224 2-120 (568)
117 1a17_A Serine/threonine protei 98.7 6.8E-07 2.3E-11 69.4 15.6 131 90-223 13-145 (166)
118 1na0_A Designed protein CTPR3; 98.7 8.1E-07 2.8E-11 65.1 14.8 116 89-207 8-123 (125)
119 4gco_A Protein STI-1; structur 98.7 7.4E-07 2.5E-11 65.9 14.3 94 128-223 16-109 (126)
120 3gw4_A Uncharacterized protein 98.7 2E-07 6.8E-12 75.3 12.1 157 65-223 3-175 (203)
121 3u3w_A Transcriptional activat 98.7 4.9E-07 1.7E-11 77.9 15.0 159 65-223 86-265 (293)
122 1p5q_A FKBP52, FK506-binding p 98.7 5E-08 1.7E-12 85.9 8.5 150 68-223 127-293 (336)
123 4gco_A Protein STI-1; structur 98.6 1.2E-06 4.1E-11 64.7 14.2 110 90-202 13-122 (126)
124 3gyz_A Chaperone protein IPGC; 98.6 1E-06 3.6E-11 67.3 13.9 98 124-223 35-132 (151)
125 2e2e_A Formate-dependent nitri 98.6 7.4E-07 2.5E-11 70.3 13.6 122 101-225 21-145 (177)
126 1na0_A Designed protein CTPR3; 98.6 1.8E-06 6.1E-11 63.2 14.7 98 125-224 9-106 (125)
127 2lni_A Stress-induced-phosphop 98.6 1.2E-06 4.2E-11 65.0 13.9 120 87-209 13-132 (133)
128 2vyi_A SGTA protein; chaperone 98.6 1.5E-06 5E-11 64.3 14.2 121 88-211 10-130 (131)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.6 4.2E-06 1.4E-10 68.1 17.7 145 127-314 8-152 (213)
130 3gyz_A Chaperone protein IPGC; 98.6 4E-07 1.4E-11 69.6 10.1 105 88-196 34-138 (151)
131 3u3w_A Transcriptional activat 98.6 2.1E-06 7.1E-11 73.9 15.7 130 94-223 79-224 (293)
132 2lni_A Stress-induced-phosphop 98.6 3E-06 1E-10 62.9 14.6 116 123-248 14-130 (133)
133 4e6h_A MRNA 3'-END-processing 98.6 1.3E-05 4.5E-10 76.6 21.9 218 107-353 326-570 (679)
134 3gw4_A Uncharacterized protein 98.5 1.8E-06 6E-11 69.6 13.8 122 101-223 3-135 (203)
135 2vgx_A Chaperone SYCD; alterna 98.5 8E-07 2.7E-11 67.8 10.8 97 125-223 21-117 (148)
136 2vgx_A Chaperone SYCD; alterna 98.5 4.8E-07 1.6E-11 69.1 9.4 110 76-189 9-118 (148)
137 2qfc_A PLCR protein; TPR, HTH, 98.5 3.7E-06 1.3E-10 72.4 15.8 159 65-223 86-265 (293)
138 1a17_A Serine/threonine protei 98.5 2.7E-06 9.3E-11 65.9 13.7 119 66-188 25-145 (166)
139 2fbn_A 70 kDa peptidylprolyl i 98.5 3.1E-07 1.1E-11 74.0 8.5 154 68-225 18-187 (198)
140 2vyi_A SGTA protein; chaperone 98.5 6E-06 2.1E-10 60.8 15.0 118 124-250 11-128 (131)
141 3upv_A Heat shock protein STI1 98.5 5.6E-06 1.9E-10 61.0 14.4 95 127-223 6-100 (126)
142 2c2l_A CHIP, carboxy terminus 98.5 1.7E-06 5.7E-11 74.0 12.8 97 90-188 4-100 (281)
143 4f3v_A ESX-1 secretion system 98.5 5.6E-06 1.9E-10 69.5 15.2 151 66-223 18-199 (282)
144 2qfc_A PLCR protein; TPR, HTH, 98.5 2.5E-05 8.7E-10 67.0 19.8 135 89-223 74-224 (293)
145 3q7a_A Farnesyltransferase alp 98.4 0.00018 6E-09 62.5 24.3 233 104-388 68-331 (349)
146 2xcb_A PCRH, regulatory protei 98.4 4.5E-06 1.5E-10 63.1 12.9 94 128-223 21-114 (142)
147 2c2l_A CHIP, carboxy terminus 98.4 3.6E-06 1.2E-10 71.9 13.7 85 66-153 16-100 (281)
148 1elw_A TPR1-domain of HOP; HOP 98.4 1.1E-05 3.8E-10 58.2 14.4 110 89-201 3-112 (118)
149 1elw_A TPR1-domain of HOP; HOP 98.4 1.5E-05 5E-10 57.5 14.8 100 124-225 3-102 (118)
150 2dba_A Smooth muscle cell asso 98.4 1.8E-05 6.2E-10 59.8 15.3 113 87-203 25-141 (148)
151 2xcb_A PCRH, regulatory protei 98.4 2.4E-06 8.1E-11 64.7 10.2 100 88-189 16-115 (142)
152 2kck_A TPR repeat; tetratricop 98.4 5.1E-06 1.8E-10 59.4 11.5 97 126-224 7-106 (112)
153 3upv_A Heat shock protein STI1 98.4 1.3E-05 4.5E-10 58.9 13.9 98 90-189 4-101 (126)
154 3sz7_A HSC70 cochaperone (SGT) 98.4 1.1E-05 3.8E-10 62.6 13.9 99 89-189 10-108 (164)
155 3q49_B STIP1 homology and U bo 98.4 1.6E-05 5.4E-10 59.4 14.3 97 125-223 9-105 (137)
156 4gcn_A Protein STI-1; structur 98.3 1.4E-05 4.6E-10 59.1 13.0 97 126-223 9-111 (127)
157 1elr_A TPR2A-domain of HOP; HO 98.3 1.4E-05 4.7E-10 58.9 13.0 97 126-223 5-107 (131)
158 1elr_A TPR2A-domain of HOP; HO 98.3 7.4E-06 2.5E-10 60.4 11.3 112 90-204 4-121 (131)
159 2uy1_A Cleavage stimulation fa 98.3 0.00042 1.4E-08 64.1 25.1 306 68-411 28-401 (493)
160 4b4t_Q 26S proteasome regulato 98.3 1.2E-05 4E-10 73.3 14.8 158 66-223 16-203 (434)
161 2kck_A TPR repeat; tetratricop 98.3 1.2E-05 4E-10 57.4 11.3 101 88-190 4-107 (112)
162 4f3v_A ESX-1 secretion system 98.3 3.7E-05 1.3E-09 64.6 15.6 98 292-398 144-245 (282)
163 4gcn_A Protein STI-1; structur 98.3 2.3E-05 7.7E-10 57.9 12.7 107 90-199 8-120 (127)
164 3q49_B STIP1 homology and U bo 98.3 2.4E-05 8.2E-10 58.3 13.1 101 87-189 6-106 (137)
165 1hxi_A PEX5, peroxisome target 98.3 1.4E-05 4.9E-10 58.4 11.3 91 131-223 23-113 (121)
166 3sz7_A HSC70 cochaperone (SGT) 98.2 2.8E-05 9.6E-10 60.2 13.6 94 127-222 13-106 (164)
167 1p5q_A FKBP52, FK506-binding p 98.2 1.7E-05 6E-10 69.5 13.7 121 64-187 157-292 (336)
168 2dba_A Smooth muscle cell asso 98.2 5.4E-05 1.9E-09 57.1 14.8 98 124-224 27-128 (148)
169 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.3E-06 4.4E-11 80.3 6.1 149 69-223 249-414 (457)
170 2uy1_A Cleavage stimulation fa 98.2 0.00038 1.3E-08 64.4 22.2 105 66-189 6-118 (493)
171 2fbn_A 70 kDa peptidylprolyl i 98.2 1.7E-05 6E-10 63.6 11.5 142 264-413 17-175 (198)
172 3dss_A Geranylgeranyl transfer 98.2 0.0015 5.1E-08 56.4 23.9 225 70-312 46-304 (331)
173 1wao_1 Serine/threonine protei 98.2 7.6E-06 2.6E-10 75.5 10.1 121 60-184 12-134 (477)
174 2xev_A YBGF; tetratricopeptide 98.2 8.5E-05 2.9E-09 54.6 14.0 94 93-189 5-105 (129)
175 3ro3_A PINS homolog, G-protein 98.2 2E-05 6.7E-10 60.5 10.9 134 90-223 9-157 (164)
176 1hxi_A PEX5, peroxisome target 98.1 2.3E-05 7.9E-10 57.2 10.3 96 92-189 19-114 (121)
177 3k9i_A BH0479 protein; putativ 98.1 6.4E-06 2.2E-10 59.8 7.2 85 138-223 3-89 (117)
178 2xev_A YBGF; tetratricopeptide 98.1 0.00011 3.8E-09 54.0 14.2 95 128-224 5-105 (129)
179 3rkv_A Putative peptidylprolyl 98.1 6E-05 2E-09 58.2 12.8 64 159-223 62-125 (162)
180 4b4t_Q 26S proteasome regulato 98.1 0.0004 1.4E-08 63.0 20.3 127 97-223 11-163 (434)
181 3ro3_A PINS homolog, G-protein 98.1 4.8E-05 1.7E-09 58.2 11.8 99 125-223 9-117 (164)
182 1wao_1 Serine/threonine protei 98.1 3.4E-06 1.1E-10 77.9 5.6 125 92-219 8-134 (477)
183 3k9i_A BH0479 protein; putativ 98.0 1.7E-05 5.9E-10 57.5 8.1 85 103-188 3-89 (117)
184 1ihg_A Cyclophilin 40; ppiase 98.0 7.8E-05 2.7E-09 66.2 12.6 124 91-216 224-362 (370)
185 2if4_A ATFKBP42; FKBP-like, al 98.0 2.5E-05 8.6E-10 68.6 9.1 96 127-224 232-328 (338)
186 3rkv_A Putative peptidylprolyl 98.0 0.00013 4.5E-09 56.2 12.0 99 90-189 11-126 (162)
187 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 3.1E-05 1.1E-09 71.1 9.2 142 263-413 246-404 (457)
188 3dss_A Geranylgeranyl transfer 97.9 0.0061 2.1E-07 52.6 22.5 239 102-388 41-304 (331)
189 1klx_A Cysteine rich protein B 97.8 0.00049 1.7E-08 51.4 12.6 111 68-190 9-127 (138)
190 3n71_A Histone lysine methyltr 97.8 8.3E-05 2.8E-09 68.3 9.6 125 99-223 318-463 (490)
191 1dce_A Protein (RAB geranylger 97.8 0.0009 3.1E-08 63.0 16.8 170 69-251 44-241 (567)
192 2hr2_A Hypothetical protein; a 97.8 0.00029 1E-08 53.4 10.8 62 162-223 59-130 (159)
193 2hr2_A Hypothetical protein; a 97.8 0.00033 1.1E-08 53.1 11.0 95 91-188 12-130 (159)
194 1klx_A Cysteine rich protein B 97.8 0.00073 2.5E-08 50.4 12.9 112 103-225 8-127 (138)
195 3n71_A Histone lysine methyltr 97.7 0.00012 4E-09 67.3 9.8 124 66-189 321-464 (490)
196 2l6j_A TPR repeat-containing p 97.7 4.1E-05 1.4E-09 54.6 4.7 89 125-216 4-99 (111)
197 2kat_A Uncharacterized protein 97.7 0.00062 2.1E-08 48.8 10.9 79 143-223 3-81 (115)
198 2l6j_A TPR repeat-containing p 97.7 0.00047 1.6E-08 48.8 10.1 88 317-413 3-97 (111)
199 1ihg_A Cyclophilin 40; ppiase 97.6 0.00062 2.1E-08 60.4 12.7 97 126-223 224-335 (370)
200 2kat_A Uncharacterized protein 97.6 0.0003 1E-08 50.5 8.8 80 72-154 3-82 (115)
201 2if4_A ATFKBP42; FKBP-like, al 97.6 0.0003 1E-08 61.7 10.0 62 162-224 232-293 (338)
202 1na3_A Designed protein CTPR2; 97.6 0.0012 4E-08 44.7 10.6 61 128-189 12-72 (91)
203 1zu2_A Mitochondrial import re 97.5 0.00037 1.3E-08 52.7 7.8 99 140-248 17-136 (158)
204 1dce_A Protein (RAB geranylger 97.5 0.008 2.7E-07 56.5 18.4 189 103-336 42-244 (567)
205 1zu2_A Mitochondrial import re 97.5 0.0004 1.4E-08 52.5 7.4 90 68-163 16-127 (158)
206 1na3_A Designed protein CTPR2; 97.4 0.0017 5.7E-08 43.9 9.8 83 89-173 8-90 (91)
207 3ma5_A Tetratricopeptide repea 97.4 0.0012 4.1E-08 46.0 8.8 63 160-223 7-69 (100)
208 3ly7_A Transcriptional activat 97.2 0.028 9.6E-07 48.9 16.4 143 87-241 191-348 (372)
209 3ma5_A Tetratricopeptide repea 97.1 0.0036 1.2E-07 43.5 8.5 61 126-187 8-68 (100)
210 3mkq_A Coatomer beta'-subunit; 97.0 0.038 1.3E-06 54.5 18.3 101 99-223 608-709 (814)
211 3ly7_A Transcriptional activat 96.8 0.033 1.1E-06 48.5 13.7 127 68-200 213-348 (372)
212 3qwp_A SET and MYND domain-con 96.8 0.0054 1.9E-07 55.4 9.4 98 289-387 293-399 (429)
213 3qww_A SET and MYND domain-con 96.8 0.0038 1.3E-07 56.3 8.1 87 137-223 310-410 (433)
214 3qww_A SET and MYND domain-con 96.7 0.0027 9.3E-08 57.3 7.1 92 295-387 310-410 (433)
215 3mkq_A Coatomer beta'-subunit; 96.7 0.066 2.3E-06 52.8 17.7 125 67-225 612-737 (814)
216 3qwp_A SET and MYND domain-con 96.7 0.0078 2.7E-07 54.3 9.9 93 131-223 293-399 (429)
217 1wy6_A Hypothetical protein ST 96.7 0.1 3.5E-06 37.7 15.9 149 162-356 7-157 (172)
218 3bee_A Putative YFRE protein; 96.2 0.099 3.4E-06 35.5 10.9 67 158-225 4-73 (93)
219 2kc7_A BFR218_protein; tetratr 96.2 0.055 1.9E-06 36.9 9.7 57 132-189 7-64 (99)
220 1pc2_A Mitochondria fission pr 96.1 0.054 1.8E-06 40.4 9.5 85 67-154 11-100 (152)
221 1pc2_A Mitochondria fission pr 96.1 0.11 3.7E-06 38.8 11.1 78 144-223 17-99 (152)
222 2kc7_A BFR218_protein; tetratr 96.1 0.032 1.1E-06 38.1 7.9 58 166-224 6-64 (99)
223 3mkq_B Coatomer subunit alpha; 96.0 0.13 4.5E-06 39.4 11.5 126 66-222 17-142 (177)
224 3mkq_B Coatomer subunit alpha; 95.7 0.39 1.3E-05 36.8 12.9 105 97-222 12-116 (177)
225 2v5f_A Prolyl 4-hydroxylase su 95.7 0.088 3E-06 36.6 8.9 67 88-154 3-75 (104)
226 3bee_A Putative YFRE protein; 95.6 0.097 3.3E-06 35.5 8.7 65 89-154 5-72 (93)
227 2v5f_A Prolyl 4-hydroxylase su 95.6 0.22 7.5E-06 34.5 10.7 63 161-223 6-74 (104)
228 3u64_A Protein TP_0956; tetrat 95.0 0.35 1.2E-05 40.4 11.4 111 89-201 153-283 (301)
229 3u64_A Protein TP_0956; tetrat 94.8 0.18 6E-06 42.2 9.2 105 62-166 171-283 (301)
230 1wy6_A Hypothetical protein ST 94.3 0.47 1.6E-05 34.3 9.1 84 102-191 73-156 (172)
231 4ady_A RPN2, 26S proteasome re 94.2 4.8 0.00016 39.8 22.2 313 63-409 383-721 (963)
232 1nzn_A CGI-135 protein, fissio 93.5 0.35 1.2E-05 34.7 7.4 93 294-393 12-106 (126)
233 1v54_E Cytochrome C oxidase po 93.2 0.7 2.4E-05 31.3 7.9 58 346-404 32-89 (109)
234 4h7y_A Dual specificity protei 92.9 0.71 2.4E-05 34.1 8.3 115 281-404 11-138 (161)
235 2ff4_A Probable regulatory pro 92.9 0.15 5.3E-06 45.2 5.9 74 91-165 172-250 (388)
236 1nzn_A CGI-135 protein, fissio 92.7 1.2 4.1E-05 31.9 9.1 80 142-223 18-102 (126)
237 4h7y_A Dual specificity protei 92.5 2.4 8.3E-05 31.3 12.2 114 87-203 10-136 (161)
238 4gns_B Protein CSD3, chitin bi 92.4 1.6 5.4E-05 42.1 12.4 126 94-222 252-398 (754)
239 4b4t_P 26S proteasome regulato 92.4 6.1 0.00021 35.6 19.7 154 67-222 29-204 (445)
240 2ff4_A Probable regulatory pro 92.1 0.84 2.9E-05 40.5 9.6 111 89-200 111-250 (388)
241 4fhn_B Nucleoporin NUP120; pro 91.6 5 0.00017 41.2 15.9 145 93-251 815-986 (1139)
242 3lvg_A Clathrin heavy chain 1; 91.5 0.0045 1.5E-07 55.3 -5.5 236 88-339 52-325 (624)
243 2y69_E Cytochrome C oxidase su 91.3 1.4 4.7E-05 31.7 7.9 58 346-404 75-132 (152)
244 1v54_E Cytochrome C oxidase po 90.7 1.3 4.5E-05 30.0 6.9 46 108-153 28-73 (109)
245 4gns_B Protein CSD3, chitin bi 90.6 5.5 0.00019 38.5 14.0 57 164-222 252-312 (754)
246 3lvg_A Clathrin heavy chain 1; 90.6 0.0025 8.7E-08 56.8 -7.9 222 124-382 53-285 (624)
247 4fhn_B Nucleoporin NUP120; pro 90.1 3.2 0.00011 42.7 12.8 139 67-214 825-990 (1139)
248 3o48_A Mitochondria fission 1 89.8 3 0.0001 30.0 8.7 76 313-393 35-110 (134)
249 1y8m_A FIS1; mitochondria, unk 87.6 6.6 0.00023 28.7 10.6 74 315-393 36-109 (144)
250 2y69_E Cytochrome C oxidase su 85.5 6.4 0.00022 28.4 8.1 57 145-202 73-129 (152)
251 2p58_C Putative type III secre 84.9 5.6 0.00019 26.9 7.1 77 141-225 23-99 (116)
252 3ffl_A Anaphase-promoting comp 84.8 7.2 0.00025 29.4 8.6 99 284-388 21-151 (167)
253 4b4t_R RPN7, 26S proteasome re 83.6 13 0.00043 33.4 11.5 61 127-187 133-195 (429)
254 4b4t_R RPN7, 26S proteasome re 82.9 13 0.00044 33.3 11.3 64 90-153 131-196 (429)
255 2uwj_G Type III export protein 82.7 5.1 0.00018 27.0 6.2 77 141-225 22-98 (115)
256 3lpz_A GET4 (YOR164C homolog); 82.1 23 0.00079 30.3 19.4 132 93-249 38-180 (336)
257 2wpv_A GET4, UPF0363 protein Y 80.9 25 0.00084 29.8 18.5 81 281-386 132-215 (312)
258 2wpv_A GET4, UPF0363 protein Y 79.9 27 0.00091 29.6 15.6 131 94-249 37-178 (312)
259 3ffl_A Anaphase-promoting comp 79.3 14 0.00048 27.8 8.4 64 90-153 20-91 (167)
260 1y8m_A FIS1; mitochondria, unk 78.0 18 0.00061 26.5 10.6 47 143-189 60-106 (144)
261 3eiq_C Programmed cell death p 75.9 35 0.0012 29.5 11.2 76 286-366 220-295 (358)
262 4b4t_P 26S proteasome regulato 75.8 45 0.0015 30.0 17.7 95 287-387 141-246 (445)
263 2uwj_G Type III export protein 75.5 16 0.00055 24.7 6.8 49 101-155 50-98 (115)
264 3o48_A Mitochondria fission 1 75.0 21 0.00071 25.7 10.3 67 157-223 37-106 (134)
265 2p58_C Putative type III secre 74.9 17 0.00057 24.7 7.5 50 135-190 50-99 (116)
266 1zbp_A Hypothetical protein VP 73.5 37 0.0013 27.9 13.9 53 65-119 8-60 (273)
267 1zbp_A Hypothetical protein VP 71.4 34 0.0012 28.1 9.4 54 169-223 6-59 (273)
268 3lpz_A GET4 (YOR164C homolog); 70.1 51 0.0018 28.2 18.3 80 282-386 135-214 (336)
269 3esl_A Checkpoint serine/threo 67.7 42 0.0014 26.2 9.8 48 346-393 101-149 (202)
270 1qsa_A Protein (soluble lytic 67.1 86 0.0029 29.6 21.2 78 129-212 76-153 (618)
271 4ady_A RPN2, 26S proteasome re 66.8 1.1E+02 0.0037 30.6 20.5 116 264-387 537-657 (963)
272 1wdy_A 2-5A-dependent ribonucl 66.5 19 0.00064 29.4 7.6 21 297-317 193-213 (285)
273 2d2s_A Exocyst complex compone 66.3 37 0.0013 27.3 8.7 90 95-187 23-118 (235)
274 3esl_A Checkpoint serine/threo 64.9 48 0.0016 25.9 9.7 57 139-195 93-150 (202)
275 4a1g_A Mitotic checkpoint seri 64.2 21 0.0007 26.5 6.2 54 107-160 82-136 (152)
276 3bu8_A Telomeric repeat-bindin 63.2 53 0.0018 25.8 10.4 49 340-388 88-143 (235)
277 2wvi_A Mitotic checkpoint seri 62.5 22 0.00076 26.7 6.2 72 87-161 60-132 (164)
278 1wdy_A 2-5A-dependent ribonucl 60.7 65 0.0022 26.0 10.0 81 293-383 155-240 (285)
279 3ljn_A Hypothetical protein; a 56.4 46 0.0016 28.5 8.5 97 88-193 16-114 (364)
280 1ug3_A EIF4GI, eukaryotic prot 56.1 93 0.0032 26.6 10.1 25 93-117 14-38 (339)
281 1wgl_A TOLL-interacting protei 54.2 24 0.00083 21.1 4.2 48 71-124 10-57 (59)
282 2d2s_A Exocyst complex compone 54.0 73 0.0025 25.6 8.4 90 131-223 24-119 (235)
283 2r9g_A AAA ATPase, central reg 52.1 82 0.0028 24.5 9.8 63 130-193 16-86 (204)
284 2fu4_A Ferric uptake regulatio 49.3 48 0.0017 21.1 6.8 65 347-412 5-70 (83)
285 4aez_C MAD3, mitotic spindle c 49.3 36 0.0012 27.1 5.7 55 106-160 130-185 (223)
286 3bge_A Predicted ATPase; struc 48.9 92 0.0031 24.2 8.2 61 131-191 10-78 (201)
287 1k1a_A B-cell lymphoma 3-encod 48.9 74 0.0025 25.0 8.1 28 132-159 13-40 (241)
288 2b7e_A PRE-mRNA processing pro 48.5 16 0.00054 21.9 2.7 29 71-100 3-31 (59)
289 3eu9_A Huntingtin-interacting 48.5 21 0.00071 28.2 4.6 19 368-386 216-234 (240)
290 2ion_A PDCD4, programmed cell 48.4 79 0.0027 23.3 7.3 67 93-160 12-80 (152)
291 2ion_A PDCD4, programmed cell 47.3 83 0.0028 23.2 7.6 71 286-361 12-82 (152)
292 1mzb_A Ferric uptake regulatio 46.6 78 0.0027 22.7 7.8 13 142-154 35-47 (136)
293 2xig_A Ferric uptake regulatio 46.1 85 0.0029 23.0 8.1 18 137-154 38-55 (150)
294 2w57_A Ferric uptake regulatio 46.1 85 0.0029 23.0 7.4 12 178-189 35-46 (150)
295 2fe3_A Peroxide operon regulat 46.1 83 0.0028 22.8 8.6 33 177-209 38-70 (145)
296 2fe3_A Peroxide operon regulat 45.8 84 0.0029 22.8 7.1 66 346-412 9-74 (145)
297 3eyy_A Putative iron uptake re 45.5 85 0.0029 22.8 7.3 32 178-209 35-66 (145)
298 2zu6_B Programmed cell death p 45.1 62 0.0021 27.3 7.0 71 286-361 169-239 (307)
299 3bu8_A Telomeric repeat-bindin 44.3 1.2E+02 0.004 24.0 7.6 50 69-119 87-143 (235)
300 1qsa_A Protein (soluble lytic 44.1 2.1E+02 0.0072 27.0 20.7 55 88-143 100-154 (618)
301 1k1a_A B-cell lymphoma 3-encod 44.0 66 0.0023 25.3 7.0 87 96-186 12-102 (241)
302 3hra_A Ankyrin repeat family p 43.4 45 0.0015 25.4 5.7 13 346-358 160-172 (201)
303 4ets_A Ferric uptake regulatio 43.3 68 0.0023 23.9 6.4 58 117-175 25-84 (162)
304 2nsz_A Programmed cell death p 42.4 90 0.0031 22.2 8.9 71 286-361 10-80 (129)
305 3ctd_A Putative ATPase, AAA fa 41.8 1.3E+02 0.0043 23.7 9.3 65 128-192 35-107 (213)
306 2xig_A Ferric uptake regulatio 41.6 95 0.0032 22.7 6.8 66 346-412 14-79 (150)
307 3mv2_A Coatomer subunit alpha; 41.3 1.6E+02 0.0056 24.9 10.8 33 46-83 111-143 (325)
308 2fu4_A Ferric uptake regulatio 40.2 69 0.0024 20.3 7.4 58 116-174 8-66 (83)
309 2nsz_A Programmed cell death p 40.1 98 0.0034 22.0 8.7 67 93-160 10-78 (129)
310 2ijq_A Hypothetical protein; s 39.6 45 0.0015 25.0 4.6 52 66-118 44-103 (161)
311 3txn_A 26S proteasome regulato 39.5 2E+02 0.0067 25.3 20.1 58 95-152 104-166 (394)
312 4a1g_A Mitotic checkpoint seri 39.1 1.1E+02 0.0039 22.5 11.9 56 141-196 81-137 (152)
313 1mzb_A Ferric uptake regulatio 38.8 93 0.0032 22.2 6.3 63 349-412 8-71 (136)
314 3pvs_A Replication-associated 37.5 2.2E+02 0.0077 25.4 12.4 54 137-190 267-325 (447)
315 3ygs_P Procaspase 9; apoptosis 37.3 57 0.002 21.8 4.6 14 106-119 53-66 (97)
316 3eyy_A Putative iron uptake re 37.1 90 0.0031 22.7 6.1 65 346-412 6-70 (145)
317 3kae_A CDC27, possible protein 37.0 1.3E+02 0.0046 22.8 6.7 62 90-157 32-94 (242)
318 4b4t_S RPN3, 26S proteasome re 36.8 2.5E+02 0.0086 25.7 10.8 65 90-154 231-299 (523)
319 2w57_A Ferric uptake regulatio 34.0 1.1E+02 0.0038 22.4 6.2 66 346-412 4-70 (150)
320 3kea_A K1L; tropism, ANK repea 33.3 1.6E+02 0.0054 24.1 7.8 105 103-220 9-117 (285)
321 4aez_C MAD3, mitotic spindle c 32.8 1.9E+02 0.0063 23.0 9.4 54 141-194 130-184 (223)
322 2o03_A Probable zinc uptake re 32.4 95 0.0033 22.0 5.5 45 96-140 16-60 (131)
323 2o03_A Probable zinc uptake re 32.1 1.3E+02 0.0044 21.3 6.1 37 174-210 24-60 (131)
324 3txn_A 26S proteasome regulato 31.9 2.6E+02 0.009 24.5 24.5 131 92-223 21-167 (394)
325 4ets_A Ferric uptake regulatio 31.7 1.6E+02 0.0054 21.9 7.8 62 150-212 23-86 (162)
326 2wvi_A Mitotic checkpoint seri 31.1 1.7E+02 0.0057 21.9 11.5 55 142-196 77-132 (164)
327 3eiq_C Programmed cell death p 30.9 2.6E+02 0.0089 24.1 11.8 78 320-404 219-298 (358)
328 2f6m_A Suppressor protein STP2 30.9 94 0.0032 19.0 4.4 46 162-208 4-49 (65)
329 3mwm_A ZUR, putative metal upt 30.7 86 0.003 22.6 5.0 46 95-140 18-63 (139)
330 4gq2_M Nucleoporin NUP120; bet 30.6 3.9E+02 0.013 26.8 11.2 48 285-332 899-950 (950)
331 3f3f_C Nucleoporin NUP85; stru 29.3 1.4E+02 0.005 27.5 7.1 90 89-180 478-569 (570)
332 3kea_A K1L; tropism, ANK repea 28.7 2.4E+02 0.0081 23.0 8.4 137 65-217 7-148 (285)
333 3l6a_A Eukaryotic translation 28.5 2.9E+02 0.0098 23.9 13.2 24 94-117 16-39 (364)
334 2yru_A Steroid receptor RNA ac 28.4 1.5E+02 0.0052 20.7 7.8 43 346-388 48-90 (118)
335 3jxi_A Vanilloid receptor-rela 28.3 71 0.0024 25.6 4.8 57 96-152 8-73 (260)
336 3mwm_A ZUR, putative metal upt 27.8 89 0.003 22.5 4.6 50 363-412 17-66 (139)
337 1oai_A Nuclear RNA export fact 27.8 53 0.0018 19.6 2.7 19 208-226 33-51 (59)
338 2ijq_A Hypothetical protein; s 27.4 1.9E+02 0.0066 21.5 7.8 53 171-223 43-103 (161)
339 4b4t_S RPN3, 26S proteasome re 27.3 3.6E+02 0.012 24.7 13.0 28 195-222 231-258 (523)
340 3eu9_A Huntingtin-interacting 27.2 1.6E+02 0.0056 22.7 6.7 13 96-108 45-57 (240)
341 2etb_A Transient receptor pote 27.2 1.1E+02 0.0038 24.3 5.8 58 96-154 5-72 (256)
342 2keb_A DNA polymerase subunit 27.1 1.4E+02 0.005 20.0 6.6 63 301-366 27-89 (101)
343 3aji_A 26S proteasome non-ATPa 26.9 2.2E+02 0.0074 21.9 8.7 76 97-178 10-88 (231)
344 4fke_A Aminopeptidase N; zinc 26.0 5E+02 0.017 25.8 13.3 89 95-188 691-786 (909)
345 3b7b_A Euchromatic histone-lys 24.6 61 0.0021 25.5 3.6 42 346-387 192-235 (237)
346 3twr_A Tankyrase-2; ankyrin re 24.0 1.2E+02 0.0042 21.9 5.0 113 96-218 11-128 (165)
347 1ug3_A EIF4GI, eukaryotic prot 24.0 99 0.0034 26.5 4.9 68 286-359 14-81 (339)
348 2yru_A Steroid receptor RNA ac 23.0 2E+02 0.0068 20.1 5.9 42 182-223 48-89 (118)
349 3lxu_X Tripeptidyl-peptidase 2 21.8 7.1E+02 0.024 26.1 13.7 47 49-101 1106-1152(1354)
350 3hra_A Ankyrin repeat family p 21.8 2.3E+02 0.0078 21.1 6.4 31 362-393 141-172 (201)
351 3qil_A Clathrin heavy chain 1; 21.4 1.1E+02 0.0039 21.5 3.7 49 94-145 36-84 (125)
352 3jxi_A Vanilloid receptor-rela 21.2 2.5E+02 0.0085 22.2 6.8 57 131-187 8-73 (260)
353 3qil_A Clathrin heavy chain 1; 21.0 48 0.0016 23.3 1.8 51 129-182 36-86 (125)
354 2r9g_A AAA ATPase, central reg 20.2 3.1E+02 0.011 21.3 9.2 72 289-362 17-91 (204)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.2e-34 Score=265.33 Aligned_cols=211 Identities=15% Similarity=0.214 Sum_probs=180.6
Q ss_pred HhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC---------c
Q 043191 71 NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR---------V 141 (414)
Q Consensus 71 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---------~ 141 (414)
..+..+++.+.+.+....+...++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455566667666652233446899999999999999999999999999999999999999999998765 5
Q ss_pred chHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043191 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEM 221 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 221 (414)
+.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhH
Q 043191 222 ANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKI 301 (414)
Q Consensus 222 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 301 (414)
.+.| +.||..||++||.+|++. |++++
T Consensus 167 ~~~G------~~Pd~~ty~~Li~~~~~~-----------------------------------------------g~~d~ 193 (501)
T 4g26_A 167 VESE------VVPEEPELAALLKVSMDT-----------------------------------------------KNADK 193 (501)
T ss_dssp HHTT------CCCCHHHHHHHHHHHHHT-----------------------------------------------TCHHH
T ss_pred HhcC------CCCCHHHHHHHHHHHhhC-----------------------------------------------CCHHH
Confidence 9999 999999988877776665 99999
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCh
Q 043191 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM 334 (414)
Q Consensus 302 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 334 (414)
|.++|++|.+.|..|+..||+.++..|+..+..
T Consensus 194 A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~ 226 (501)
T 4g26_A 194 VYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVAT 226 (501)
T ss_dssp HHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcch
Confidence 999999999999999999999999999875433
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.5e-34 Score=266.06 Aligned_cols=208 Identities=13% Similarity=0.224 Sum_probs=176.6
Q ss_pred chHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------h
Q 043191 142 SHGFVVLGRILRSCFTPDA-VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH---------T 211 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~ 211 (414)
..+..+.+.+.+.+....+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777665554 35888899999999999999999999999999999999999999987664 6
Q ss_pred HHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHH
Q 043191 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291 (414)
Q Consensus 212 ~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~ 291 (414)
++|.++|++|...| +.||..||+++|.+|++.
T Consensus 87 ~~A~~lf~~M~~~G------~~Pd~~tyn~lI~~~~~~------------------------------------------ 118 (501)
T 4g26_A 87 SRGFDIFKQMIVDK------VVPNEATFTNGARLAVAK------------------------------------------ 118 (501)
T ss_dssp HHHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHH------------------------------------------
T ss_pred HHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHhc------------------------------------------
Confidence 88999999999999 999999988877776665
Q ss_pred HHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043191 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK 371 (414)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 371 (414)
|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+ +|++|.+.|+.||..||++||.+|++
T Consensus 119 -----g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~------l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 119 -----DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE------VDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp -----TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH------HHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcC
Q 043191 372 IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINS 408 (414)
Q Consensus 372 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 408 (414)
.|++++|.++|++|.+.|..|+..||+.++..|+..+
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999987643
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.7e-28 Score=235.42 Aligned_cols=313 Identities=12% Similarity=0.009 Sum_probs=275.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHH--------------------------------------HHHHHhcCCh
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNIL--------------------------------------FGCLAKTKHY 106 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------i~~~~~~~~~ 106 (414)
.+.|++++|+++|+.+.+.++ .+...+..+ +..|.+.|++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVDA--KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCc--hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence 457999999999999999876 344444433 5556678999
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043191 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKL 186 (414)
Q Consensus 107 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 186 (414)
++|.++|+++.+. .++..+++.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+++
T Consensus 289 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 289 RRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999866 5799999999999999999999999999999876 458889999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccc
Q 043191 187 RVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266 (414)
Q Consensus 187 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~ 266 (414)
.... +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+. |+
T Consensus 366 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~---------------g~ 422 (597)
T 2xpi_A 366 VDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-------PQFGPAWIGFAHSFAIE---------------GE 422 (597)
T ss_dssp HHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHH---------------TC
T ss_pred HhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHc---------------CC
Confidence 8664 5678999999999999999999999999998743 34577899999998885 78
Q ss_pred hhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHH
Q 043191 267 LNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVF 344 (414)
Q Consensus 267 ~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~ 344 (414)
+++|...++ +... +.+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++..|.+.|++++|.+
T Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~----- 496 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAIN----- 496 (597)
T ss_dssp HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH-----
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHH-----
Confidence 999999998 6655 557889999999999999999999999999886543 78999999999999999999998
Q ss_pred HHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 345 LLFKRLNST----GLFPD--LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 345 ~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
+|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ ..+..+|..+..+|.+.|++++|
T Consensus 497 -~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 497 -HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp -HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 99998875 77888 7899999999999999999999999999864 34789999999999999999887
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.8e-27 Score=225.38 Aligned_cols=311 Identities=11% Similarity=0.002 Sum_probs=273.4
Q ss_pred hhhcCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 043191 57 CKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136 (414)
Q Consensus 57 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 136 (414)
.......+.+.|++++|.++|+.+... .++..+|+.++..+.+.|++++|.++|+++.+.+ +.+..++..++.++.
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLH 350 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHH
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHH
Confidence 444577888999999999999999765 3889999999999999999999999999998765 337788999999999
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043191 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216 (414)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 216 (414)
+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.+
T Consensus 351 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998764 5678999999999999999999999999998764 4568899999999999999999999
Q ss_pred HHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHH
Q 043191 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLC 294 (414)
Q Consensus 217 ~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~ 294 (414)
+|+++.+.+ +.+..+|..++.+|.+. |++++|...+. +... +.+..+|+.++..|.
T Consensus 429 ~~~~~~~~~-------~~~~~~~~~l~~~~~~~---------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 429 AYTTAARLF-------QGTHLPYLFLGMQHMQL---------------GNILLANEYLQSSYALFQYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHTT-------TTCSHHHHHHHHHHHHH---------------TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-------ccchHHHHHHHHHHHHc---------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999854 45778899999998875 78999999999 6665 456888999999999
Q ss_pred hcCChhHHHHHHHhchhC----CCCCC--HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043191 295 KISKLKIARELFQSLPRA----GLMPN--VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368 (414)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 368 (414)
+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.. +++++.+.+ +.+..+|..+..+
T Consensus 487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~-p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID------ALNQGLLLS-TNDANVHTAIALV 559 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHS-SCCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH------HHHHHHHhC-CCChHHHHHHHHH
Confidence 999999999999999776 66787 7899999999999999999999 999998864 3478999999999
Q ss_pred HHhcCCHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHH
Q 043191 369 FCKIGRVSSGFVIFGRILPSCFTP-DAVTFTSLIKIL 404 (414)
Q Consensus 369 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 404 (414)
|.+.|++++|.++|+++.+. .| +...+..+..+|
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 99999999999999999985 44 456666666554
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=4.8e-23 Score=186.81 Aligned_cols=310 Identities=12% Similarity=0.076 Sum_probs=229.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a 144 (414)
..|++++|...++...+..| .+..+|..+...+.+.|++++|++.|+++.+. .| +..+|..+..++.+.|++++|
T Consensus 45 ~~~~~~~a~~~~~~a~~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 120 (388)
T 1w3b_A 45 QCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGA 120 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHH
T ss_pred HcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHH
Confidence 45788999999998888776 78888999999999999999999999998765 34 456788899999999999999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
.+.|+++.+.. +.+...+..+...+...|++++|.++|+++.... +.+..+|..+...+.+.|++++|...|+++.+.
T Consensus 121 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 198 (388)
T 1w3b_A 121 VQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198 (388)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999988874 3355667778888888999999999999988764 345788899999999999999999999999874
Q ss_pred CCCCCccccCc-hhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhcc-ccccHHHHHHHHHhcCChhH
Q 043191 225 NGEFGVVCEPD-AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQC-LCLNFLCLIDGLCKISKLKI 301 (414)
Q Consensus 225 ~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~li~~~~~~~~~~~ 301 (414)
.|+ ...+..+...+... +++++|...+. .....| +..++..+...|.+.|++++
T Consensus 199 --------~p~~~~~~~~lg~~~~~~---------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 255 (388)
T 1w3b_A 199 --------DPNFLDAYINLGNVLKEA---------------RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp --------CTTCHHHHHHHHHHHHTT---------------TCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred --------CCCcHHHHHHHHHHHHHc---------------CCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 343 44555555555554 55666666666 444433 35666667777777777777
Q ss_pred HHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043191 302 ARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVI 381 (414)
Q Consensus 302 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 381 (414)
|...|+++.+.+.. +..+|..+..++.+.|++++|.. .++++.+.. +.+..++..+...+...|++++|...
T Consensus 256 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~------~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 256 AIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAED------CYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp HHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHH------HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHH------HHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777665332 45667777777777777777766 677766542 33566777777777777777777777
Q ss_pred HHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 382 FGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 382 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
++++.+.. ..+..++..+..+|.+.|++++|
T Consensus 328 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 328 YRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 77776642 23456677777777777777665
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1.6e-22 Score=183.44 Aligned_cols=312 Identities=13% Similarity=0.034 Sum_probs=267.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
+.|++++|++.++.+.+..| .+...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|.
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 45899999999999998876 677788889999999999999999999887653 447889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.++|+++.+..
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999874 4456789999999999999999999999998874 3346678888899999999999999999998743
Q ss_pred CCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhcc-ccccHHHHHHHHHhcCChhHHH
Q 043191 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQC-LCLNFLCLIDGLCKISKLKIAR 303 (414)
Q Consensus 226 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~li~~~~~~~~~~~a~ 303 (414)
+-+..+|..+...+... |++++|...++ .....| +...|..+...+...|++++|.
T Consensus 166 -------p~~~~~~~~l~~~~~~~---------------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 166 -------PNFAVAWSNLGCVFNAQ---------------GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp -------TTCHHHHHHHHHHHHTT---------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHH
T ss_pred -------CCCHHHHHHHHHHHHHc---------------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 23456777777777664 77889999998 655544 4677888999999999999999
Q ss_pred HHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043191 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383 (414)
Q Consensus 304 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 383 (414)
..|++....... +..++..+..++...|++++|.. .++++.+... .+..+|..+...+.+.|++++|...|+
T Consensus 224 ~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~------~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 224 AAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAID------TYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHH------HHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999998876433 57889999999999999999999 9999988642 257889999999999999999999999
Q ss_pred hhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 384 RILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 384 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
++.+.. ..+..++..+...+.+.|++++|
T Consensus 296 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 296 TALRLC-PTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhhC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 999863 55789999999999999999876
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=5e-21 Score=176.95 Aligned_cols=300 Identities=9% Similarity=0.028 Sum_probs=248.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
+.|++++|+.+|+.+....+ .+..+|..+..++...|++++|+..|+++.+.+ +.+..++..+..+|.+.|++++|.
T Consensus 38 ~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 114 (450)
T 2y4t_A 38 AAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAE 114 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 45899999999999998876 789999999999999999999999999998764 336788999999999999999999
Q ss_pred HHHHHHHHcCCCCCH---HhHHHHH------------HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043191 146 VVLGRILRSCFTPDA---VTFTSLI------------KDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~---~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 210 (414)
+.|+++.+.. +.+. ..+..+. ..+.+.|++++|..+|+++.... +.+..++..+..+|.+.|+
T Consensus 115 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 192 (450)
T 2y4t_A 115 DDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGE 192 (450)
T ss_dssp HHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCC
Confidence 9999998864 3334 5555553 44899999999999999998865 4578899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhcccc-ccHHH
Q 043191 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQCLC-LNFLC 288 (414)
Q Consensus 211 ~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~-~~~~~ 288 (414)
+++|..+|+++.+.. +.+..++..+...+... |+.++|...+. +....|+. ..+..
T Consensus 193 ~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~---------------g~~~~A~~~~~~~~~~~p~~~~~~~~ 250 (450)
T 2y4t_A 193 PRKAISDLKAASKLK-------NDNTEAFYKISTLYYQL---------------GDHELSLSEVRECLKLDQDHKRCFAH 250 (450)
T ss_dssp GGGGHHHHHHHHHHH-------CSCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHc---------------CCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 999999999998743 34567788888887764 77888998888 66665543 33444
Q ss_pred H------------HHHHHhcCChhHHHHHHHhchhCCCCCC-----HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHH
Q 043191 289 L------------IDGLCKISKLKIARELFQSLPRAGLMPN-----VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351 (414)
Q Consensus 289 l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~ 351 (414)
+ ...|.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|.. .++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~------~~~~a~ 322 (450)
T 2y4t_A 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIR------VCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHH------HHHHHH
Confidence 4 789999999999999999998753 33 4478889999999999999988 999987
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC-HHHHHHHHHH
Q 043191 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD-AVTFTSLIKI 403 (414)
Q Consensus 352 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~ 403 (414)
+.. +.+...|..+..+|...|++++|...++++++. .|+ ...+..+..+
T Consensus 323 ~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 323 QME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKA 372 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHH
T ss_pred HhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 752 336889999999999999999999999999984 454 5566666543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=8.3e-21 Score=175.48 Aligned_cols=304 Identities=12% Similarity=0.063 Sum_probs=243.8
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 043191 73 ALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152 (414)
Q Consensus 73 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 152 (414)
+...|.......| .+...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++.
T Consensus 11 ~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 11 VDLGTENLYFQSM--ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ------------C--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444555444 678899999999999999999999999998752 3478899999999999999999999999999
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHH------------HHHHHhcCChHHHHHH
Q 043191 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV---FTYNTL------------INGLCRTGHTIVALNL 217 (414)
Q Consensus 153 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~a~~~ 217 (414)
+.+ +.+..++..+..+|.+.|++++|.+.|+++.... +.+. ..+..+ ...+.+.|++++|...
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 886 5578899999999999999999999999998764 2233 555555 4448899999999999
Q ss_pred HHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHh
Q 043191 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCK 295 (414)
Q Consensus 218 ~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~ 295 (414)
|+++.+.. +.+...+..+...+... |++++|...+. .... +.+...|..+..+|..
T Consensus 166 ~~~~~~~~-------~~~~~~~~~l~~~~~~~---------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 166 LDKILEVC-------VWDAELRELRAECFIKE---------------GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHT---------------TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-------CCChHHHHHHHHHHHHC---------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99998743 34566777777777664 77888888888 5554 5567889999999999
Q ss_pred cCChhHHHHHHHhchhCCCCCCHhhHHHH------------HHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCC-----
Q 043191 296 ISKLKIARELFQSLPRAGLMPNVVTYNIL------------IRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD----- 358 (414)
Q Consensus 296 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l------------i~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~----- 358 (414)
.|++++|...|+++...... +...+..+ ...|...|++++|.. .++++.+. .|+
T Consensus 224 ~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~------~~~~~l~~--~p~~~~~~ 294 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS------KYESVMKT--EPSIAEYT 294 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH------HHHHHHHH--CCSSHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH------HHHHHHhc--CCcchHHH
Confidence 99999999999999875332 44455444 788999999999988 99999875 344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 359 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
...|..+...+.+.|++++|...++++.+.. ..+...|..+..+|...|++++|
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A 348 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEA 348 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 4578889999999999999999999998752 33689999999999999999887
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.4e-17 Score=148.71 Aligned_cols=307 Identities=8% Similarity=-0.002 Sum_probs=247.0
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
...|++++|+..|+.+....| .+..++..+...+...|++++|+..|+++.+.. +-+...+..+..++...|++++|
T Consensus 14 ~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 90 (359)
T 3ieg_A 14 LAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEA 90 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHH
Confidence 356899999999999999876 678899999999999999999999999988763 22678899999999999999999
Q ss_pred HHHHHHHHHcCCC---CCHHhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043191 145 FVVLGRILRSCFT---PDAVTFTSL------------IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209 (414)
Q Consensus 145 ~~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 209 (414)
.+.|+++.+.. + .+...+..+ ...+...|++++|.++++++.+.. +.+..++..+...+...|
T Consensus 91 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 91 EDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCC
Confidence 99999998764 2 244555544 578899999999999999998875 457889999999999999
Q ss_pred ChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhcccc-ccHH
Q 043191 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQCLC-LNFL 287 (414)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~-~~~~ 287 (414)
++++|...+++..+.. +.+...+..+...+... |++++|...+. .....|+. ..+.
T Consensus 169 ~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~---------------~~~~~A~~~~~~a~~~~~~~~~~~~ 226 (359)
T 3ieg_A 169 EPRKAISDLKAASKLK-------SDNTEAFYKISTLYYQL---------------GDHELSLSEVRECLKLDQDHKRCFA 226 (359)
T ss_dssp CHHHHHHHHHHHHTTC-------SCCHHHHHHHHHHHHHH---------------TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHc---------------CCHHHHHHHHHHHHhhCccchHHHH
Confidence 9999999999999854 34556677777776664 77888888888 55554432 3222
Q ss_pred ------------HHHHHHHhcCChhHHHHHHHhchhCCCCCCH----hhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHH
Q 043191 288 ------------CLIDGLCKISKLKIARELFQSLPRAGLMPNV----VTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351 (414)
Q Consensus 288 ------------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~ 351 (414)
.+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|.. .+++..
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~------~~~~~~ 299 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR------ICSEVL 299 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH------HHHHHH
Confidence 2366789999999999999998875433 23 234557789999999999988 999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC-HHHHHHHHHHHHHcC
Q 043191 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD-AVTFTSLIKILEINS 408 (414)
Q Consensus 352 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g 408 (414)
+.. +.+..+|..+...|...|++++|...|+++.+. .|+ ...+..+..+....+
T Consensus 300 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 300 QME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHH
T ss_pred HhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHH
Confidence 752 336889999999999999999999999999985 454 666777777665544
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.1e-18 Score=163.89 Aligned_cols=328 Identities=8% Similarity=-0.024 Sum_probs=261.0
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
.+.|++++|+..|+.+.... |+..+|..+..++.+.|++++|+..|+++.+.+ +.+..+|..+..++.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHH
Confidence 45689999999999999876 578999999999999999999999999998764 33677899999999999999999
Q ss_pred HHHHHHHHHcCCCCC-----------------------------------------------------------------
Q 043191 145 FVVLGRILRSCFTPD----------------------------------------------------------------- 159 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 159 (414)
...|+++.+.+. ++
T Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 93 MFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 999999987652 11
Q ss_pred --------------HHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHhcC
Q 043191 160 --------------AVTFTSLIKDLCA---ESRIMEAAALFTKLRV-----FGC--------ELDVFTYNTLINGLCRTG 209 (414)
Q Consensus 160 --------------~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g 209 (414)
...+......+.. .|++++|..+|+++.. ..- +.+..++..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 2222233333333 8999999999999987 311 223567888999999999
Q ss_pred ChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHH-------------------HHhhccchhhH
Q 043191 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS-------------------CMASFSALNKM 270 (414)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~a 270 (414)
++++|...|+++.+.. |+...+..+...+...|+...+.... .....|++++|
T Consensus 252 ~~~~A~~~~~~~l~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELF--------PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp CHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred CHHHHHHHHHHHHhhC--------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999844 44777888888888888744443321 11267889999
Q ss_pred hhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHH
Q 043191 271 AFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFK 348 (414)
Q Consensus 271 ~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~ 348 (414)
...+. .... +.+...+..+...|...|++++|...++++.+.... +...+..+...+...|++++|.. .++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~------~~~ 396 (514)
T 2gw1_A 324 GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALK------QYD 396 (514)
T ss_dssp HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHH------HHH
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHH------HHH
Confidence 99998 5555 445778888999999999999999999998876432 56788889999999999999988 888
Q ss_pred HHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 349 RLNSTGLF-PD----LYTYNILINCFCK---IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 349 ~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
++.+.... ++ ...+..+...|.. .|++++|...++++.+.. ..+..++..+...|.+.|++++|
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 87763211 11 3488899999999 999999999999998863 33678899999999999999876
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.8e-17 Score=145.05 Aligned_cols=277 Identities=11% Similarity=-0.011 Sum_probs=215.1
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-CcchHH
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG-RVSHGF 145 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~ 145 (414)
.|++++|+++|+.+....+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...| ++++|.
T Consensus 35 ~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~ 111 (330)
T 3hym_B 35 NCDFKMCYKLTSVVMEKDP--FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHAR 111 (330)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHH
Confidence 3788899999998888776 566677778888888889999999888887653 235677888888888888 888899
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
+.|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|...+++..+..
T Consensus 112 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 112 RYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189 (330)
T ss_dssp HHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 8888888764 4466778888888888899999999888888764 3345667778888888899999999888888743
Q ss_pred CCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHH
Q 043191 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305 (414)
Q Consensus 226 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 305 (414)
|+. ...+..+...+...|++++|...
T Consensus 190 --------~~~----------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 190 --------PED----------------------------------------------PFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp --------TTC----------------------------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------CCC----------------------------------------------hHHHHHHHHHHHHcccHHHHHHH
Confidence 321 12244456667777999999999
Q ss_pred HHhchhCC--------CCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043191 306 FQSLPRAG--------LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377 (414)
Q Consensus 306 ~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 377 (414)
+++..+.. ...+..++..+...+...|++++|.. .+++..+.. +.+...+..+...|...|++++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~------~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 288 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD------YHRQALVLI-PQNASTYSAIGYIHSLMGNFEN 288 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH------HHHHHHhhC-ccchHHHHHHHHHHHHhccHHH
Confidence 99876531 12345789999999999999999988 899888753 2367889999999999999999
Q ss_pred HHHHHHhhhhCCCCCCHHHHHHHHHHH-HHcCCc
Q 043191 378 GFVIFGRILPSCFTPDAVTFTSLIKIL-EINSFF 410 (414)
Q Consensus 378 a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~ 410 (414)
|...+++..+.. ..+...+..+..++ ...|+.
T Consensus 289 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 289 AVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 999999999853 23677888888877 455554
No 12
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=8.9e-21 Score=181.03 Aligned_cols=122 Identities=15% Similarity=0.220 Sum_probs=112.4
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHhch---hCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCC
Q 043191 282 LCLNFLCLIDGLCKISKLKIARELFQSLP---RAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358 (414)
Q Consensus 282 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~ 358 (414)
...+||+||++||+.|++++|.++|++|. ..|+.||..|||+||.+||+.|++++|.+ +|++|.+.|+.||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~------Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVY------VLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHH------HHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHH------HHHHHHHcCCCCc
Confidence 34679999999999999999999998865 45899999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCC
Q 043191 359 LYTYNILINCFCKIGR-VSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSF 409 (414)
Q Consensus 359 ~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 409 (414)
..||+++|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+.+-
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v 251 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH
Confidence 9999999999999998 47899999999999999999999988777766543
No 13
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=8.8e-21 Score=181.06 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=126.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHH
Q 043191 89 PVTSFNILFGCLAKTKHYDTVLSLFKRLNL---TGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165 (414)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (414)
-..+||+||.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345899999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCc------hhh
Q 043191 166 LIKDLCAESR-IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD------AIT 238 (414)
Q Consensus 166 li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~------~~~ 238 (414)
||.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+. .+++.++++.. + +.|+ ..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P-~------f~p~~~~~~~~~t 274 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKP-T------FSLPPQLPPPVNT 274 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCC-C------CCCCCCCCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCc-c------cCCCCCCcccccc
Confidence 9999999998 478999999999999999999999998766554 34444444422 2 3333 445
Q ss_pred HHHHHHHHHhhc
Q 043191 239 YSTIIDGLCKEA 250 (414)
Q Consensus 239 ~~~li~~~~~~~ 250 (414)
...|.+.|.+.+
T Consensus 275 ~~LL~dl~s~d~ 286 (1134)
T 3spa_A 275 SKLLRDVYAKDG 286 (1134)
T ss_dssp CTTTHHHHCCCS
T ss_pred hHHHHHHHccCC
Confidence 555666665544
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=6.2e-17 Score=144.46 Aligned_cols=291 Identities=11% Similarity=0.040 Sum_probs=234.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043191 89 PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168 (414)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 168 (414)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678889999999999999999999998763 3367889999999999999999999999999875 447788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHcCCCCCCcccc
Q 043191 169 DLCAESRIMEAAALFTKLRVFGCE---LDVFTYNTL------------INGLCRTGHTIVALNLFEEMANGNGEFGVVCE 233 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~~---~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 233 (414)
.+...|++++|...|++..+.. + .+...+..+ ...+...|++++|..+++++.+.. +
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~ 151 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-------V 151 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------C
Confidence 9999999999999999998763 2 244455444 578899999999999999998743 3
Q ss_pred CchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchh
Q 043191 234 PDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311 (414)
Q Consensus 234 p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 311 (414)
.+...+..+...+.. .|++++|...+. .... +.+...+..+...|...|++++|...|++..+
T Consensus 152 ~~~~~~~~~~~~~~~---------------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 152 WDAELRELRAECFIK---------------EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp TCHHHHHHHHHHHHH---------------TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345566666666655 478899999988 5554 55678889999999999999999999999887
Q ss_pred CCCCCCHhhHH------------HHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCH
Q 043191 312 AGLMPNVVTYN------------ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL----YTYNILINCFCKIGRV 375 (414)
Q Consensus 312 ~g~~p~~~~~~------------~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~ 375 (414)
.... +...+. .+...+.+.|++++|.. .++++.+.... +. ..+..+...+...|++
T Consensus 217 ~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~------~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 217 LDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS------KYESVMKTEPS-VAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCH
T ss_pred hCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH------HHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCH
Confidence 5432 333333 22566889999999988 99998875322 23 2355677889999999
Q ss_pred HHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 376 SSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 376 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
++|...+++..+.. ..+..++..+...|.+.|++++|
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 325 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEA 325 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999852 33789999999999999999887
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=3.4e-18 Score=153.52 Aligned_cols=283 Identities=11% Similarity=-0.010 Sum_probs=183.8
Q ss_pred CCHHhHHH-HHHHHHhcCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 68 ITPNEALC-VFDYMLNMRPSRP--PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 68 ~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
|++++|++ .|+......+..| +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 55566666 6655444333112 34556666666666777777777776666542 22455666666666666777777
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhcC
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT---------------LINGLCRTG 209 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~~g 209 (414)
.+.|+++.+.. +.+..++..+...|...|++++|.+.|+++..... .+...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 77666666654 33566666666666666777777766666665431 11111110 122222455
Q ss_pred ChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHH
Q 043191 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCL 289 (414)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 289 (414)
++++|...|+++.+.. |+. ++..++..+
T Consensus 196 ~~~~A~~~~~~a~~~~--------p~~--------------------------------------------~~~~~~~~l 223 (368)
T 1fch_A 196 LFLEVKELFLAAVRLD--------PTS--------------------------------------------IDPDVQCGL 223 (368)
T ss_dssp HHHHHHHHHHHHHHHS--------TTS--------------------------------------------CCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC--------cCc--------------------------------------------ccHHHHHHH
Confidence 5555555555555422 220 023445667
Q ss_pred HHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043191 290 IDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCF 369 (414)
Q Consensus 290 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 369 (414)
...|...|++++|...|+++...... +...|..+...+...|++++|.. .++++.+.. +.+...+..+...|
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~------~~~~al~~~-~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVA------AYRRALELQ-PGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHH------HHHHHHHhC-CCcHHHHHHHHHHH
Confidence 77778889999999999998876432 67889999999999999999988 899888753 23678899999999
Q ss_pred HhcCCHHHHHHHHHhhhhCCCCC----------CHHHHHHHHHHHHHcCCcccc
Q 043191 370 CKIGRVSSGFVIFGRILPSCFTP----------DAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 370 ~~~g~~~~a~~~~~~m~~~g~~p----------~~~~~~~li~~~~~~g~~~~a 413 (414)
.+.|++++|...|+++.+..-.. ...+|..+..+|...|++++|
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999999999999988742111 268999999999999999986
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=2.3e-17 Score=155.92 Aligned_cols=328 Identities=11% Similarity=0.065 Sum_probs=221.4
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
.+.|++++|++.|+.+....| .+..+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|
T Consensus 36 ~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 112 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDA 112 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHH
Confidence 466899999999999999886 788999999999999999999999999988764 33678889999999999999999
Q ss_pred HHHHHHHHHcCC------------------------------------CCCHH---------------------------
Q 043191 145 FVVLGRILRSCF------------------------------------TPDAV--------------------------- 161 (414)
Q Consensus 145 ~~~~~~~~~~~~------------------------------------~~~~~--------------------------- 161 (414)
.+.|+.+....- .|+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (537)
T 3fp2_A 113 MFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192 (537)
T ss_dssp HHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSS
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccH
Confidence 988853311100 00000
Q ss_pred ---hHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043191 162 ---TFTSLIKDLCA--------ESRIMEAAALFTKLRVFGCELD--------VFTYNTLINGLCRTGHTIVALNLFEEMA 222 (414)
Q Consensus 162 ---~~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 222 (414)
....+...+.. .|++++|..+|+++.+.. |+ ..++..+...+...|++++|...|++..
T Consensus 193 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 01111111111 124555555555554432 22 1234444455555555555555555555
Q ss_pred cCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHH-------------------HHHhhccchhhHhhhhh-hhhh-cc
Q 043191 223 NGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF-------------------SCMASFSALNKMAFYFP-LVRV-QC 281 (414)
Q Consensus 223 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~a~~~~~-~~~~-~~ 281 (414)
+ ..|+...+..+...+...|+...+... ......|++++|...+. .... +.
T Consensus 271 ~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 271 N--------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp H--------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred h--------cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 5 233444444444444444442221111 01115688999999998 5555 44
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCC-----CC
Q 043191 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG-----LF 356 (414)
Q Consensus 282 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~-----~~ 356 (414)
+...+..+...|...|++++|...++++.+.... +...+..+...+...|++++|.. .++++.+.. ..
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~------~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIK------QYDIAKRLEEVQEKIH 415 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHHHHCSSCS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHH------HHHHHHHcCCcchhhH
Confidence 5778889999999999999999999999876433 56788899999999999999988 888876531 11
Q ss_pred CCHHHHHHHHHHHHhc----------CCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 357 PDLYTYNILINCFCKI----------GRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 357 p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
.....+......+... |++++|...|+++.+.. ..+...+..+...|.+.|++++|
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 1222344455667777 99999999999998863 33678899999999999999876
No 17
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.9e-16 Score=148.65 Aligned_cols=309 Identities=8% Similarity=-0.100 Sum_probs=242.5
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----------------------
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP---------------------- 123 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---------------------- 123 (414)
..|++++|++.|+.+.+.+| .+..+|..+..++.+.|++++|...|+++...+...
T Consensus 51 ~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (514)
T 2gw1_A 51 SVGDLKKVVEMSTKALELKP--DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKE 128 (514)
T ss_dssp HHTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHhccCh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999876 778899999999999999999999999987654210
Q ss_pred --------------------------------------------------------CHhhHHHHHHHHHh---cCCcchH
Q 043191 124 --------------------------------------------------------DRYTYNILINCFCK---MGRVSHG 144 (414)
Q Consensus 124 --------------------------------------------------------~~~~~~~li~~~~~---~~~~~~a 144 (414)
+...+......+.. .|++++|
T Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 208 (514)
T 2gw1_A 129 KFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKA 208 (514)
T ss_dssp C---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHH
T ss_pred HHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHH
Confidence 02222223333333 7899999
Q ss_pred HHHHHHHHH-----cCC--------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 043191 145 FVVLGRILR-----SCF--------TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211 (414)
Q Consensus 145 ~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 211 (414)
..+|+++.+ ..- +.+..++..+...+...|++++|..+|+++.... |+..++..+..+|...|++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDS 286 (514)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCH
Confidence 999999987 311 2235678888889999999999999999998875 3488888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHH-------------------HHhhccchhhHhh
Q 043191 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS-------------------CMASFSALNKMAF 272 (414)
Q Consensus 212 ~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~a~~ 272 (414)
++|...++++.... +.+...+..+...+...|+...+.... .....|++++|..
T Consensus 287 ~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 287 TEYYNYFDKALKLD-------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp TTGGGHHHHHHTTC-------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HHHHHHHHHHhhcC-------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999998754 345667888888888887744333221 1127789999999
Q ss_pred hhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCC-CC----HhhHHHHHHHHHh---cCChhhhhhhhh
Q 043191 273 YFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM-PN----VVTYNILIRGLCN---DGQMDETKHYET 342 (414)
Q Consensus 273 ~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~---~g~~~~a~~~~~ 342 (414)
.+. .... +.+...+..+...|...|++++|...++++.+.... ++ ...|..+...+.. .|++++|..
T Consensus 360 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~--- 436 (514)
T 2gw1_A 360 LFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN--- 436 (514)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH---
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH---
Confidence 998 5555 446778899999999999999999999998764322 11 3388889999999 999999988
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCH
Q 043191 343 VFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA 394 (414)
Q Consensus 343 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 394 (414)
.++.+.+.. +.+..++..+...|.+.|++++|...|++..+. .|+.
T Consensus 437 ---~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 437 ---LLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp ---HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred ---HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 899888753 236788899999999999999999999999985 4554
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=9.8e-17 Score=141.53 Aligned_cols=261 Identities=9% Similarity=-0.000 Sum_probs=213.6
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHH
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (414)
..+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3566678888889999999999999999988663 2355677778888899999999999999998875 4567888889
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCc-hhhHHHHHH
Q 043191 167 IKDLCAES-RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD-AITYSTIID 244 (414)
Q Consensus 167 i~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~-~~~~~~li~ 244 (414)
...+...| ++++|.+.|++..... +.+...|..+...+...|++++|...|++..+.. |+ ...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~------ 161 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--------KGCHLP------ 161 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--------TTCSHH------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------cccHHH------
Confidence 99999999 9999999999998764 3457788999999999999999999999988743 32 122
Q ss_pred HHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHH
Q 043191 245 GLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324 (414)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 324 (414)
+..+...|...|++++|...+++..+.... +...+..+
T Consensus 162 -----------------------------------------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l 199 (330)
T 3hym_B 162 -----------------------------------------MLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEV 199 (330)
T ss_dssp -----------------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 333556667779999999999999886543 67889999
Q ss_pred HHHHHhcCChhhhhhhhhHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHH
Q 043191 325 IRGLCNDGQMDETKHYETVFLLFKRLNSTG--------LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVT 396 (414)
Q Consensus 325 i~~~~~~g~~~~a~~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 396 (414)
...+...|++++|.. .+++..+.. ...+..++..+...|...|++++|...+++..+.. ..+...
T Consensus 200 ~~~~~~~~~~~~A~~------~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~ 272 (330)
T 3hym_B 200 GVVAFQNGEWKTAEK------WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNAST 272 (330)
T ss_dssp HHHHHHTTCHHHHHH------HHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHH
T ss_pred HHHHHHcccHHHHHH------HHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHH
Confidence 999999999999988 887777631 13346789999999999999999999999998863 336788
Q ss_pred HHHHHHHHHHcCCcccc
Q 043191 397 FTSLIKILEINSFFRQV 413 (414)
Q Consensus 397 ~~~li~~~~~~g~~~~a 413 (414)
+..+...|.+.|++++|
T Consensus 273 ~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 273 YSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhccHHHH
Confidence 99999999999999886
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=2.1e-17 Score=148.35 Aligned_cols=259 Identities=12% Similarity=-0.042 Sum_probs=200.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (414)
.+...|..+...+.+.|++++|+++|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668899999999999999999999988763 3367889999999999999999999999998875 45688899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCc-
Q 043191 168 KDLCAESRIMEAAALFTKLRVFGCELD-----------VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD- 235 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~- 235 (414)
..|...|++++|...|+++.+.. |+ ...+..+...+.+.|++++|..+|+++.+.. |+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~ 210 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN--------GDM 210 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS--------CSS
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--------cCc
Confidence 99999999999999999988752 22 2334455788889999999999999998743 33
Q ss_pred --hhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCC
Q 043191 236 --AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313 (414)
Q Consensus 236 --~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 313 (414)
..+ +..+...|...|++++|...|++..+..
T Consensus 211 ~~~~~-----------------------------------------------~~~l~~~~~~~g~~~~A~~~~~~al~~~ 243 (365)
T 4eqf_A 211 IDPDL-----------------------------------------------QTGLGVLFHLSGEFNRAIDAFNAALTVR 243 (365)
T ss_dssp CCHHH-----------------------------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cCHHH-----------------------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 333 3345556666799999999999988764
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCC---
Q 043191 314 LMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCF--- 390 (414)
Q Consensus 314 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--- 390 (414)
.. +..+|..+..+|...|++++|.. .++++.+.. +.+..+|..+...|...|++++|...|+++++..-
T Consensus 244 p~-~~~~~~~l~~~~~~~g~~~~A~~------~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 244 PE-DYSLWNRLGATLANGDRSEEAVE------AYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHH------HHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 33 67889999999999999998888 888888753 22478889999999999999999999999886420
Q ss_pred C--------CCHHHHHHHHHHHHHcCCcccc
Q 043191 391 T--------PDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 391 ~--------p~~~~~~~li~~~~~~g~~~~a 413 (414)
. .+..+|..+..++...|+.+.|
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 316 NQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp -----------CHHHHHHHHHHHHHTCHHHH
T ss_pred CCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 1 1367889999999999887754
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.3e-16 Score=140.54 Aligned_cols=256 Identities=11% Similarity=-0.038 Sum_probs=203.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
..|++++|+.+|+.+....+ .+..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|.
T Consensus 33 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 109 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAAL 109 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44899999999999998876 678889999999999999999999999988763 336778888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043191 146 VVLGRILRSCFTPDAVTFTSL--------------IK-DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 210 (414)
+.++++.+.. +.+...+..+ .. .+...|++++|.++++++.+.. +.+..++..+...|...|+
T Consensus 110 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 187 (327)
T 3cv0_A 110 ASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNN 187 (327)
T ss_dssp HHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcc
Confidence 9999998864 2233333333 22 3777889999999999988775 4478889999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHH
Q 043191 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLI 290 (414)
Q Consensus 211 ~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li 290 (414)
+++|...++++.+.. |+.. ..+..+.
T Consensus 188 ~~~A~~~~~~~~~~~--------~~~~----------------------------------------------~~~~~l~ 213 (327)
T 3cv0_A 188 YDSAAANLRRAVELR--------PDDA----------------------------------------------QLWNKLG 213 (327)
T ss_dssp HHHHHHHHHHHHHHC--------TTCH----------------------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHhC--------CCcH----------------------------------------------HHHHHHH
Confidence 999999999988733 3221 1234456
Q ss_pred HHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCC-----------CH
Q 043191 291 DGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP-----------DL 359 (414)
Q Consensus 291 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p-----------~~ 359 (414)
..+...|++++|...|+++.+.... +...+..+...+...|++++|.. .++++.+..... +.
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~------~~~~a~~~~~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAK------QLVRAIYMQVGGTTPTGEASREATR 286 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHHTTSCC-----CCTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHH------HHHHHHHhCCccccccccchhhcCH
Confidence 6667779999999999998876432 67889999999999999999988 888887643221 47
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 360 YTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 360 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
..|..+..++.+.|++++|..++++.++
T Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 287 SMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7899999999999999999999887654
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=6.7e-17 Score=145.00 Aligned_cols=255 Identities=10% Similarity=-0.053 Sum_probs=200.5
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
+.|++++|++.|+.+....| .+..+|..+...+.+.|++++|+..|+++.+.. +.+..++..+..+|...|++++|.
T Consensus 77 ~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 153 (365)
T 4eqf_A 77 KEGDLPVTILFMEAAILQDP--GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDAC 153 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHH
Confidence 45899999999999999886 788999999999999999999999999998763 336888999999999999999999
Q ss_pred HHHHHHHHcCCC---------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHH
Q 043191 146 VVLGRILRSCFT---------PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE-LDVFTYNTLINGLCRTGHTIVAL 215 (414)
Q Consensus 146 ~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~ 215 (414)
+.|+++.+.... .....+..+...+.+.|++++|.++|+++....-. .+..++..+...|.+.|++++|.
T Consensus 154 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 154 EALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp HHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999886311 01223345578899999999999999999987421 16889999999999999999999
Q ss_pred HHHHHHHcCCCCCCccccCc-hhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHH
Q 043191 216 NLFEEMANGNGEFGVVCEPD-AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294 (414)
Q Consensus 216 ~~~~~m~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 294 (414)
..|++..+.. |+ ..+ |..+..+|.
T Consensus 234 ~~~~~al~~~--------p~~~~~-----------------------------------------------~~~l~~~~~ 258 (365)
T 4eqf_A 234 DAFNAALTVR--------PEDYSL-----------------------------------------------WNRLGATLA 258 (365)
T ss_dssp HHHHHHHHHC--------TTCHHH-----------------------------------------------HHHHHHHHH
T ss_pred HHHHHHHHhC--------CCCHHH-----------------------------------------------HHHHHHHHH
Confidence 9999998743 33 222 444666677
Q ss_pred hcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCC-----------CCCHHHHH
Q 043191 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGL-----------FPDLYTYN 363 (414)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~-----------~p~~~~~~ 363 (414)
..|++++|...|+++.+.... +..+|..+..+|...|++++|.. .++++.+... ..+...|.
T Consensus 259 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~------~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 331 (365)
T 4eqf_A 259 NGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAVS------NFLTALSLQRKSRNQQQVPHPAISGNIWA 331 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHH------HHHHHHHHHHCC------------CHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHH------HHHHHHHhCcccCCCcccchhhhHHHHHH
Confidence 779999999999998876433 57889999999999999999988 8888776311 11357899
Q ss_pred HHHHHHHhcCCHHHHHHHHHhh
Q 043191 364 ILINCFCKIGRVSSGFVIFGRI 385 (414)
Q Consensus 364 ~li~~~~~~g~~~~a~~~~~~m 385 (414)
.+..++...|+.+.+.++.++-
T Consensus 332 ~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 332 ALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999999999998887653
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=1e-16 Score=138.70 Aligned_cols=251 Identities=11% Similarity=0.056 Sum_probs=183.7
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
..|++..|+..++......| .......-.+.++|...|+++.|+..++.. -.|+..++..+...+...++.++|+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p-~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSP-ERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSH-HHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCc-hhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 45899999999987755443 222446667889999999999999876542 3567788899999999999999999
Q ss_pred HHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 146 VVLGRILRSCFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 146 ~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
+.++++...+..| +...+..+...+.+.|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++.+
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~- 158 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD- 158 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 9999999877545 556677777899999999999999987 46788999999999999999999999999987
Q ss_pred CCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHH
Q 043191 225 NGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARE 304 (414)
Q Consensus 225 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 304 (414)
..|+.. ...+..++. ..+...|++++|..
T Consensus 159 -------~~p~~~-~~~l~~a~~-------------------------------------------~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 159 -------QDEDAT-LTQLATAWV-------------------------------------------SLAAGGEKLQDAYY 187 (291)
T ss_dssp -------HCTTCH-HHHHHHHHH-------------------------------------------HHHHCTTHHHHHHH
T ss_pred -------hCcCcH-HHHHHHHHH-------------------------------------------HHHhCchHHHHHHH
Confidence 445532 222222221 12223466777777
Q ss_pred HHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHH
Q 043191 305 LFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS-GFVIFG 383 (414)
Q Consensus 305 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~ 383 (414)
+|+++.+.. +.+...|+.+..++.+.|++++|.. .+++..+.. +-+..++..++..+...|+.++ +.++++
T Consensus 188 ~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~------~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 188 IFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEG------VLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLS 259 (291)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHH------HHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 777776653 2366667777777777777777777 777766542 2256667777777777777654 456777
Q ss_pred hhhh
Q 043191 384 RILP 387 (414)
Q Consensus 384 ~m~~ 387 (414)
++++
T Consensus 260 ~~~~ 263 (291)
T 3mkr_A 260 QLKD 263 (291)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=2.9e-16 Score=140.89 Aligned_cols=255 Identities=15% Similarity=0.038 Sum_probs=206.5
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
..|++++|+..|+.+.+..+ .+..+|..+..++.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.
T Consensus 76 ~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 152 (368)
T 1fch_A 76 QEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQAC 152 (368)
T ss_dssp HTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45899999999999999876 788899999999999999999999999998764 337888999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 043191 146 VVLGRILRSCFTPDAVTFTS---------------LIKDLCAESRIMEAAALFTKLRVFGCEL-DVFTYNTLINGLCRTG 209 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g 209 (414)
+.++++.+.. +.+...+.. .+..+...|++++|..+|+++....... +..++..+...|.+.|
T Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 153 EILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp HHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 9999999875 223333321 2444448999999999999998874211 5889999999999999
Q ss_pred ChHHHHHHHHHHHcCCCCCCccccCc-hhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHH
Q 043191 210 HTIVALNLFEEMANGNGEFGVVCEPD-AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLC 288 (414)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 288 (414)
++++|...|+++... .|+ ... +..
T Consensus 232 ~~~~A~~~~~~al~~--------~~~~~~~-----------------------------------------------~~~ 256 (368)
T 1fch_A 232 EYDKAVDCFTAALSV--------RPNDYLL-----------------------------------------------WNK 256 (368)
T ss_dssp CHHHHHHHHHHHHHH--------CTTCHHH-----------------------------------------------HHH
T ss_pred CHHHHHHHHHHHHHh--------CcCCHHH-----------------------------------------------HHH
Confidence 999999999999873 333 222 344
Q ss_pred HHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCC----------CC
Q 043191 289 LIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF----------PD 358 (414)
Q Consensus 289 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~----------p~ 358 (414)
+...|...|++++|...|+++.+... .+...+..+..+|...|++++|.. .+++..+.... ..
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~------~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVE------HFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH------HHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHhCCCCCCccccccchh
Confidence 56666777999999999999887643 367889999999999999999988 88877763211 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 043191 359 LYTYNILINCFCKIGRVSSGFVIFGRIL 386 (414)
Q Consensus 359 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 386 (414)
..+|..+..+|...|++++|..++++.+
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 6889999999999999999999887544
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=6.8e-16 Score=135.93 Aligned_cols=269 Identities=9% Similarity=-0.040 Sum_probs=182.2
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043191 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206 (414)
Q Consensus 127 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 206 (414)
.+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34445555666666666666666665543 3355566666666666666666666666666553 335566666677777
Q ss_pred hcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHH-HHhhccchhhHhhhhh-hhhh-cccc
Q 043191 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFS-CMASFSALNKMAFYFP-LVRV-QCLC 283 (414)
Q Consensus 207 ~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~-~~~~-~~~~ 283 (414)
..|++++|.+.++++.+.. +.+...+..+...+.. +......... .....+++++|...+. .... +.+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 172 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ-------PQYEQLGSVNLQADVD-IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA 172 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS-------TTTTTC---------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HcCCHHHHHHHHHHHHHhC-------CccHHHHHHHhHHHHH-HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCH
Confidence 7777777777777766533 1111222221110000 0000000000 1224688899999888 5555 4457
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHH
Q 043191 284 LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363 (414)
Q Consensus 284 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~ 363 (414)
..+..+...|...|++++|...++++.+.... +...+..+...+...|++++|.. .++++.+.. +.+...+.
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~------~~~~a~~~~-~~~~~~~~ 244 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALD------AYNRALDIN-PGYVRVMY 244 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHH------HHHHHHHcC-CCCHHHHH
Confidence 78889999999999999999999999876433 67889999999999999999988 999988753 23678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhhCCCCC-----------CHHHHHHHHHHHHHcCCcccc
Q 043191 364 ILINCFCKIGRVSSGFVIFGRILPSCFTP-----------DAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 364 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~a 413 (414)
.+...|...|++++|.+.++++.+..... +...|..+..++.+.|++++|
T Consensus 245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999998753221 478999999999999999876
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=9e-18 Score=148.86 Aligned_cols=239 Identities=11% Similarity=0.051 Sum_probs=72.1
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
+.|++++|.++++.+ ++..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 457789999999988 22348999999999999999999999653 57779999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+.
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~--- 149 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--- 149 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT---
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh---
Confidence 977766664 4567889999999999999999998885 3677899999999999999999999999762
Q ss_pred CCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHH
Q 043191 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305 (414)
Q Consensus 226 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 305 (414)
. |..++.++.+.|++++|.+.
T Consensus 150 ------------n-----------------------------------------------~~~LA~~L~~Lg~yq~AVea 170 (449)
T 1b89_A 150 ------------N-----------------------------------------------FGRLASTLVHLGEYQAAVDG 170 (449)
T ss_dssp ------------C-----------------------------------------------HHHHHHHHHTTTCHHHHHHH
T ss_pred ------------h-----------------------------------------------HHHHHHHHHHhccHHHHHHH
Confidence 2 44455555555555555555
Q ss_pred HHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 043191 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385 (414)
Q Consensus 306 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 385 (414)
+.++ .++.+|..++.+|...|+++.|.. ....+ ...+.-...++..|.+.|++++|..+++..
T Consensus 171 ~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~------~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 171 ARKA------NSTRTWKEVCFACVDGKEFRLAQM------CGLHI-----VVHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHH------TCHHHHHHHHHHHHHTTCHHHHHH------TTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHc------CCchhHHHHHHHHHHcCcHHHHHH------HHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555 145555555555555555555544 22221 112222334555555555555555555555
Q ss_pred hhCCCCCCHHHHHHHHHHHHH
Q 043191 386 LPSCFTPDAVTFTSLIKILEI 406 (414)
Q Consensus 386 ~~~g~~p~~~~~~~li~~~~~ 406 (414)
+... .-....|+-|..+|++
T Consensus 234 L~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 234 LGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp TTST-TCCHHHHHHHHHHHHT
T ss_pred hCCc-HHHHHHHHHHHHHHHh
Confidence 5432 2334455555444443
No 26
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.73 E-value=9.7e-16 Score=144.72 Aligned_cols=298 Identities=11% Similarity=0.039 Sum_probs=225.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043191 89 PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168 (414)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 168 (414)
....|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++.+.|++++|.+.++++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 35678888999999999999999999998763 3378889999999999999999999999999876 557888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC------------------------------------CCCHH----------------
Q 043191 169 DLCAESRIMEAAALFTKLRVFGC------------------------------------ELDVF---------------- 196 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~------------------------------------~~~~~---------------- 196 (414)
++...|++++|...|+.+....- .|+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999999964421100 01111
Q ss_pred --------------HHHHHHHHHH--------hcCChHHHHHHHHHHHcCCCCCCccccCc-hhhHHHHHHHHHhhcCCC
Q 043191 197 --------------TYNTLINGLC--------RTGHTIVALNLFEEMANGNGEFGVVCEPD-AITYSTIIDGLCKEAGSA 253 (414)
Q Consensus 197 --------------~~~~li~~~~--------~~g~~~~a~~~~~~m~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~ 253 (414)
....+...+. ..|++++|..+|+++.+.. |+ ...+..+..++...|
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~~~~~g--- 250 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--------TVDDPLRENAALALCYTG--- 250 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHH---
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--------CCcchhhHHHHHHHHHHH---
Confidence 1111111111 1247889999999998743 33 233333333333221
Q ss_pred chhHHHHHhhccchhhHhhhhh-hhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcC
Q 043191 254 NFLGFSCMASFSALNKMAFYFP-LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332 (414)
Q Consensus 254 ~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 332 (414)
......+++++|...+. .....|+...+..+...|...|++++|...|+++.+.... +..+|..+...+...|
T Consensus 251 -----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 251 -----IFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQ 324 (537)
T ss_dssp -----HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred -----HHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcC
Confidence 11224688999999998 7777777788888999999999999999999998876443 6788999999999999
Q ss_pred ChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCccc
Q 043191 333 QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412 (414)
Q Consensus 333 ~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 412 (414)
++++|.. .+++..+... -+...|..+...|...|++++|..+++++.+.. ..+...+..+...|...|++++
T Consensus 325 ~~~~A~~------~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 325 DYKNAKE------DFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp CHHHHHH------HHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHH------HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 9999988 8998887532 246788889999999999999999999998863 3356788999999999999887
Q ss_pred c
Q 043191 413 V 413 (414)
Q Consensus 413 a 413 (414)
|
T Consensus 397 A 397 (537)
T 3fp2_A 397 A 397 (537)
T ss_dssp H
T ss_pred H
Confidence 6
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=1.3e-14 Score=125.42 Aligned_cols=241 Identities=12% Similarity=0.102 Sum_probs=185.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043191 97 FGCLAKTKHYDTVLSLFKRLNLTGLFPDR--YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174 (414)
Q Consensus 97 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 174 (414)
++.....|+++.|+..++..... .|+. .....+.++|...|+++.|+..++. . -+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 44556789999999998876543 3443 4556678899999999998876644 2 3667788888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCC
Q 043191 175 RIMEAAALFTKLRVFGCEL-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSA 253 (414)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 253 (414)
+.++|++.++++...+..| +...+..+..++.+.|++++|++.+++ + .+...
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~--------~~~~~--------------- 132 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----G--------DSLEC--------------- 132 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----C--------CSHHH---------------
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----C--------CCHHH---------------
Confidence 9999999999998776444 566677777899999999999999877 2 12222
Q ss_pred chhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhH---HHHHHHHHh
Q 043191 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTY---NILIRGLCN 330 (414)
Q Consensus 254 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~ 330 (414)
+..+...|.+.|++++|.+.|+++.+.. |+.... ..++..+..
T Consensus 133 --------------------------------~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~ 178 (291)
T 3mkr_A 133 --------------------------------MAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAG 178 (291)
T ss_dssp --------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred --------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhC
Confidence 3345566777799999999999998764 443211 223344445
Q ss_pred cCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCc
Q 043191 331 DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFF 410 (414)
Q Consensus 331 ~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 410 (414)
.|++++|.. +|+++.+. .+.+...|+.+..++.+.|++++|...|++.++.. .-+..++..++..+...|+.
T Consensus 179 ~~~~~eA~~------~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~ 250 (291)
T 3mkr_A 179 GEKLQDAYY------IFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKP 250 (291)
T ss_dssp TTHHHHHHH------HHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHH------HHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCC
Confidence 588888888 99999987 34578899999999999999999999999998863 23678999999999999998
Q ss_pred cc
Q 043191 411 RQ 412 (414)
Q Consensus 411 ~~ 412 (414)
++
T Consensus 251 ~e 252 (291)
T 3mkr_A 251 PE 252 (291)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.6e-14 Score=120.30 Aligned_cols=226 Identities=10% Similarity=-0.007 Sum_probs=169.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCC--CCC----HHhH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF--TPD----AVTF 163 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 163 (414)
...|..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|.+.+++..+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777778888888888888888877665 5677777788888888888888888887766421 111 4667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHH
Q 043191 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTII 243 (414)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li 243 (414)
..+...+...|++++|...|++.... .|+. ..+.+.|++++|...++.+.... |+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~--------~~-------- 137 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN--------PE-------- 137 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC--------HH--------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC--------cc--------
Confidence 77777788888888888888877765 3443 33455667777777777776632 22
Q ss_pred HHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHH
Q 043191 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNI 323 (414)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 323 (414)
+...+..+...+...|++++|...|++..+.... +...|..
T Consensus 138 --------------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 178 (258)
T 3uq3_A 138 --------------------------------------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSN 178 (258)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred --------------------------------------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHH
Confidence 1223445666777789999999999998876443 6788999
Q ss_pred HHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 324 li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
+...+...|++++|.. .+++..+.. +.+...|..+...+...|++++|...+++..+.
T Consensus 179 l~~~~~~~~~~~~A~~------~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 179 RAAALAKLMSFPEAIA------DCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHTTCHHHHHH------HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHH------HHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988 888888753 235788999999999999999999999998874
No 29
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.6e-14 Score=123.89 Aligned_cols=251 Identities=8% Similarity=-0.075 Sum_probs=170.1
Q ss_pred CCCCCCCHHhHHHHHHHHHhcCCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043191 63 GDITSITPNEALCVFDYMLNMRPS--RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 140 (414)
.+...|++++|++.|+.+.+..+. ..+..+|..+...+...|++++|...|+++.+.. +.+..+|..+..++...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 445678899999999999886431 1356788899999999999999999999988763 2367888999999999999
Q ss_pred cchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043191 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220 (414)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 220 (414)
+++|.+.|++..+.. +.+...+..+...|.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...+++
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999998874 4467888999999999999999999999988763 4444444455556777899999999987
Q ss_pred HHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChh
Q 043191 221 MANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLK 300 (414)
Q Consensus 221 m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 300 (414)
..... .++...+. ++ ..+...++.+
T Consensus 170 ~~~~~-------~~~~~~~~-~~-----------------------------------------------~~~~~~~~~~ 194 (275)
T 1xnf_A 170 HFEKS-------DKEQWGWN-IV-----------------------------------------------EFYLGNISEQ 194 (275)
T ss_dssp HHHHS-------CCCSTHHH-HH-----------------------------------------------HHHTTSSCHH
T ss_pred HHhcC-------CcchHHHH-HH-----------------------------------------------HHHHHhcCHH
Confidence 77643 22222222 22 2223335555
Q ss_pred HHHHHHHhchhCCCCC---CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043191 301 IARELFQSLPRAGLMP---NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSS 377 (414)
Q Consensus 301 ~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 377 (414)
+|...+++........ +...|..+...|...|++++|.. .+++..+.. |+. +.....++...|++++
T Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~------~~~~al~~~--p~~--~~~~~~~~~~l~~~~~ 264 (275)
T 1xnf_A 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA------LFKLAVANN--VHN--FVEHRYALLELSLLGQ 264 (275)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH------HHHHHHTTC--CTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHH------HHHHHHhCC--chh--HHHHHHHHHHHHHHHh
Confidence 6666666554332110 13556666666666666666666 666666542 211 2222345556666666
Q ss_pred HHHHH
Q 043191 378 GFVIF 382 (414)
Q Consensus 378 a~~~~ 382 (414)
|++.+
T Consensus 265 a~~~~ 269 (275)
T 1xnf_A 265 DQDDL 269 (275)
T ss_dssp C----
T ss_pred hHHHH
Confidence 65544
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=5.8e-12 Score=117.50 Aligned_cols=312 Identities=12% Similarity=0.018 Sum_probs=224.2
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAK----TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK--- 137 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--- 137 (414)
...+++++|++.|+...+.+ +..++..|...|.. .+++++|.++|++..+.| +...+..|...|..
T Consensus 54 ~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 126 (490)
T 2xm6_A 54 ETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNG 126 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 35678888999888887653 46677888888888 888888988888887764 55667777777777
Q ss_pred -cCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c
Q 043191 138 -MGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA----ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR----T 208 (414)
Q Consensus 138 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~ 208 (414)
.+++++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..+...|.. .
T Consensus 127 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 200 (490)
T 2xm6_A 127 VKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVE 200 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCC
Confidence 678888888888888765 56667777777776 778888888888887764 56777777777777 7
Q ss_pred CChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHh----hcCCC-------------chhHHH---HHh-h----
Q 043191 209 GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSA-------------NFLGFS---CMA-S---- 263 (414)
Q Consensus 209 g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~-------------~~~~~~---~~~-~---- 263 (414)
++.++|.+.|++..+.+ +...+..+...|.. .++.. +..... .+. .
T Consensus 201 ~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 201 RNDAISAQWYRKSATSG---------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTS
T ss_pred cCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Confidence 88888888888877655 23344444444443 11111 111110 011 2
Q ss_pred ccchhhHhhhhhhhhhccccccHHHHHHHHHhc-----CChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcC---Chh
Q 043191 264 FSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI-----SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG---QMD 335 (414)
Q Consensus 264 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~ 335 (414)
.++.++|...++..-...+...+..+...|... +++++|...|++..+.| +...+..+-..|...| +++
T Consensus 272 ~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp SCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence 577888888887322234555667777777776 88999999999888765 4566777777776655 455
Q ss_pred hhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHH----c
Q 043191 336 ETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK----IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI----N 407 (414)
Q Consensus 336 ~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~ 407 (414)
+|.. .|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..|...|.+ .
T Consensus 349 ~A~~------~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 349 KAVE------WFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp HHHH------HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred HHHH------HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCC
Confidence 5555 899888864 67888888888888 899999999999998875 57788888888887 6
Q ss_pred CCcccc
Q 043191 408 SFFRQV 413 (414)
Q Consensus 408 g~~~~a 413 (414)
+++++|
T Consensus 417 ~d~~~A 422 (490)
T 2xm6_A 417 RDYVQA 422 (490)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 777665
No 31
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=5.8e-12 Score=117.49 Aligned_cols=305 Identities=11% Similarity=0.003 Sum_probs=224.5
Q ss_pred hHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCcch
Q 043191 72 EALCVFDYMLNMRPSRPPVTSFNILFGCLAK----TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK----MGRVSH 143 (414)
Q Consensus 72 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~ 143 (414)
.+++.+....+ ..++.++..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++
T Consensus 25 ~~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 25 VNLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp CCHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34555555544 3567888888888888 899999999999998764 56788888888988 899999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 043191 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCA----ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR----TGHTIVAL 215 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~ 215 (414)
|.+.|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999998876 66777888888888 889999999999998876 56778888888887 78999999
Q ss_pred HHHHHHHcCCCCCCccccCchhhHHHHHHHHHh----hcCCCchhHH-------------HHH---h-----hccchhhH
Q 043191 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK----EAGSANFLGF-------------SCM---A-----SFSALNKM 270 (414)
Q Consensus 216 ~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~~~~~-------------~~~---~-----~~~~~~~a 270 (414)
+.|++..+.+ +...+..+...|.. .++...+..+ ..+ . ..++.++|
T Consensus 172 ~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 172 EWYSKAAEQG---------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHCC---------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999998765 44555666666655 3332111111 111 1 15677777
Q ss_pred hhhhhhhhhccccccHHHHHHHHHh----cCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhc-----CChhhhhhhh
Q 043191 271 AFYFPLVRVQCLCLNFLCLIDGLCK----ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND-----GQMDETKHYE 341 (414)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~a~~~~ 341 (414)
...+...-...+...+..+...|.. .+++++|...|++..+.| +...+..+-..|... +++++|..
T Consensus 243 ~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~-- 317 (490)
T 2xm6_A 243 RVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS-- 317 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH--
Confidence 7777732223445556666666766 788888888888877654 455666677777766 77777777
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHH----cCCcccc
Q 043191 342 TVFLLFKRLNSTGLFPDLYTYNILINCFCKIG---RVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI----NSFFRQV 413 (414)
Q Consensus 342 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a 413 (414)
.+++..+.| +...+..+...|...| +.++|+++|++..+.| +...+..|...|.. .+++++|
T Consensus 318 ----~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 318 ----WYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp ----HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ----HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 888888764 5566777777777656 7888999998888864 67778888888877 6666554
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=5.5e-14 Score=120.47 Aligned_cols=244 Identities=11% Similarity=-0.027 Sum_probs=186.2
Q ss_pred HhcCChhHHHHHHHHHHhCCCC--C-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 043191 101 AKTKHYDTVLSLFKRLNLTGLF--P-DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177 (414)
Q Consensus 101 ~~~~~~~~a~~~~~~m~~~g~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 177 (414)
...|++++|++.|+++.+.... | +..++..+..++...|++++|.+.|+++.+.. +.+..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457899999999999876321 1 46678889999999999999999999999875 457889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhH
Q 043191 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLG 257 (414)
Q Consensus 178 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~ 257 (414)
+|.+.|++..+.. +.+..++..+...|.+.|++++|...|+++.+ ..|+.......+.
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--------~~~~~~~~~~~~~------------- 152 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--------DDPNDPFRSLWLY------------- 152 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHH-------------
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--------hCCCChHHHHHHH-------------
Confidence 9999999998874 44678899999999999999999999999987 3454433222221
Q ss_pred HHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhh
Q 043191 258 FSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDET 337 (414)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 337 (414)
.+...|++++|...+++...... ++...+ .++..+...++.++|
T Consensus 153 ----------------------------------~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 153 ----------------------------------LAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTL 196 (275)
T ss_dssp ----------------------------------HHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHH
T ss_pred ----------------------------------HHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHH
Confidence 22344889999999987766532 244444 467777788887777
Q ss_pred hhhhhHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 338 KHYETVFLLFKRLNSTGLFP---DLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 338 ~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
.. .+....+..... +...+..+...|...|++++|...|++.++. .|+. +.....++...|++++|
T Consensus 197 ~~------~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 197 ME------RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQD 265 (275)
T ss_dssp HH------HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC
T ss_pred HH------HHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhh
Confidence 77 888876542111 1578888999999999999999999999985 3532 23335566777777765
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=5.2e-13 Score=114.22 Aligned_cols=248 Identities=11% Similarity=0.082 Sum_probs=179.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC--HHhHHHHHH
Q 043191 91 TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD--AVTFTSLIK 168 (414)
Q Consensus 91 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~ 168 (414)
..+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..+.+-.++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445667778888999999999999987763 22455788888889999999999999999887431121 234788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCc-hhhHHHHHHHHH
Q 043191 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD-AITYSTIIDGLC 247 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~-~~~~~~li~~~~ 247 (414)
.+...|++++|.+.|++..+.. +.+..+|..+...|...|++++|...|++..+.. |+ ...+..+.
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~---- 149 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--------TTDPKVFYELG---- 149 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--------CCCHHHHHHHH----
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--------CCcHHHHHHHH----
Confidence 8999999999999999988764 3456788899999999999999999999888743 33 23333222
Q ss_pred hhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHH
Q 043191 248 KEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRG 327 (414)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 327 (414)
..+...+++++|...|++..+.... +...+..+...
T Consensus 150 -------------------------------------------~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~ 185 (272)
T 3u4t_A 150 -------------------------------------------QAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARA 185 (272)
T ss_dssp -------------------------------------------HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHH
Confidence 1112225899999999988876432 46777778888
Q ss_pred HHhcCC---hhhhhhhhhHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC-HHH
Q 043191 328 LCNDGQ---MDETKHYETVFLLFKRLNSTG-LFPD------LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD-AVT 396 (414)
Q Consensus 328 ~~~~g~---~~~a~~~~~a~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~ 396 (414)
+...|+ +++|.. .+++..+.. -.|+ ...|..+...|...|++++|...+++.++. .|+ ...
T Consensus 186 ~~~~~~~~~~~~A~~------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a 257 (272)
T 3u4t_A 186 NAAQDPDTKQGLAKP------YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKA 257 (272)
T ss_dssp HHHHSTTCSSCTTHH------HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHcCcchhhHHHHH------HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHH
Confidence 888888 777877 666666531 1123 257788889999999999999999999985 444 445
Q ss_pred HHHHHHHH
Q 043191 397 FTSLIKIL 404 (414)
Q Consensus 397 ~~~li~~~ 404 (414)
+..+-...
T Consensus 258 ~~~l~~~~ 265 (272)
T 3u4t_A 258 IDGLKMKL 265 (272)
T ss_dssp HHHHC---
T ss_pred HHHhhhhh
Confidence 44444433
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=1.2e-13 Score=114.03 Aligned_cols=200 Identities=12% Similarity=-0.008 Sum_probs=133.6
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043191 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202 (414)
Q Consensus 123 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 202 (414)
++...+..+...+.+.|++++|...|++.++.. +.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455566666667777777777777777776654 4456667777777777777777777777776654 33556667777
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHh
Q 043191 203 NGLCRT-----------GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMA 271 (414)
Q Consensus 203 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 271 (414)
.++.+. |++++|...|++..+ ..|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--------~~P~~~---------------------------------- 118 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER--------VNPRYA---------------------------------- 118 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--------HCTTCH----------------------------------
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--------hCcccH----------------------------------
Confidence 777776 888888888888877 344422
Q ss_pred hhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHH
Q 043191 272 FYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351 (414)
Q Consensus 272 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~ 351 (414)
..+..+..++...|++++|+..|++..+.. .+...+..+..+|...|++++|.. .+++..
T Consensus 119 ------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~------~~~~al 178 (217)
T 2pl2_A 119 ------------PLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALA------QYAKAL 178 (217)
T ss_dssp ------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHH------HHHHHH
T ss_pred ------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHH------HHHHHH
Confidence 123345556667799999999999988876 588888899999999999988888 888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 352 STGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 352 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
+.. +-+...+..+...+...|++++|+..+++...
T Consensus 179 ~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 179 EQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 753 22577888888899999999999998887643
No 35
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.59 E-value=4.8e-15 Score=131.53 Aligned_cols=268 Identities=10% Similarity=0.066 Sum_probs=123.6
Q ss_pred HhhhcCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 043191 56 RCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF 135 (414)
Q Consensus 56 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 135 (414)
.+.......++.|++++|++.|.+. +|...|..++..+...|++++|+..++...+. .++..+.+.++.+|
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHH
Confidence 4445566778889999999999653 66779999999999999999999987766654 45678899999999
Q ss_pred HhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043191 136 CKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215 (414)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 215 (414)
.+.|++.++.++++ .|+..+|+.+...|...|.+++|..+|..+ ..|..++.++.+.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 99999999988874 367789999999999999999999999977 36899999999999999999
Q ss_pred HHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhccccccHHHHHHHHH
Q 043191 216 NLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQCLCLNFLCLIDGLC 294 (414)
Q Consensus 216 ~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~li~~~~ 294 (414)
+.+.++. +..+|..++.+|... |+++.|..... +. ..| .....++..|.
T Consensus 169 ea~~KA~------------~~~~Wk~v~~aCv~~---------------~ef~lA~~~~l~L~-~~a--d~l~~lv~~Ye 218 (449)
T 1b89_A 169 DGARKAN------------STRTWKEVCFACVDG---------------KEFRLAQMCGLHIV-VHA--DELEELINYYQ 218 (449)
T ss_dssp HHHHHHT------------CHHHHHHHHHHHHHT---------------TCHHHHHHTTTTTT-TCH--HHHHHHHHHHH
T ss_pred HHHHHcC------------CchhHHHHHHHHHHc---------------CcHHHHHHHHHHHH-hCH--hhHHHHHHHHH
Confidence 9999882 578999999999886 56666655444 22 222 22445888999
Q ss_pred hcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 043191 295 KISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP------DLYTYNILINC 368 (414)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p------~~~~~~~li~~ 368 (414)
+.|++++|..+++...... +-....|+.+--.|++-. +++..+ .+++|.. +..++| +...|..++-.
T Consensus 219 k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~e---hl~~~~~--~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMRE---HLELFWS--RVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHH---HHHHHST--TSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHH---HHHHHHH--HhcCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877654 346777888877777653 333222 2223331 122222 34456667777
Q ss_pred HHhcCCHHHHHHHHHhhhhC
Q 043191 369 FCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 369 ~~~~g~~~~a~~~~~~m~~~ 388 (414)
|...++++. ....|++.
T Consensus 292 y~~~~e~d~---A~~tm~~h 308 (449)
T 1b89_A 292 YDKYEEYDN---AIITMMNH 308 (449)
T ss_dssp HHHTTCHHH---HHHHHHHS
T ss_pred HHhhchHHH---HHHHHHhC
Confidence 777777764 34555553
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=1.6e-12 Score=109.76 Aligned_cols=132 Identities=11% Similarity=-0.089 Sum_probs=70.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 169 (414)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556666666666666666666666665442 2244555555555566666666666665555543 2244455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 170 LCAESRIMEAAALFTKLRVFGCEL-DVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 170 ~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
|...|++++|.++|+++...+..| +...+..+...+...|++++|...|++..+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555555554421122 234444455555555555555555555444
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=2.1e-13 Score=114.47 Aligned_cols=193 Identities=12% Similarity=0.020 Sum_probs=151.1
Q ss_pred CCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043191 61 GEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140 (414)
Q Consensus 61 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 140 (414)
...+...|++++|+..|+.+....+ .+...+..+...+...|++++|++.|+++.+.. +.+..++..+...+...|+
T Consensus 30 a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 30 MGRGSEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp ------------CCTTHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhcc
Confidence 3445677899999999999988765 678889999999999999999999999988663 2367888889999999999
Q ss_pred cchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043191 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220 (414)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 220 (414)
+++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|...|++
T Consensus 107 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 107 YKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998875 4577888899999999999999999999988764 44678889999999999999999999999
Q ss_pred HHcCCCCCCccccCc-hhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCCh
Q 043191 221 MANGNGEFGVVCEPD-AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKL 299 (414)
Q Consensus 221 m~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 299 (414)
..+.. |+ ..+ +..+..+|...|++
T Consensus 185 ~~~~~--------~~~~~~-----------------------------------------------~~~la~~~~~~~~~ 209 (243)
T 2q7f_A 185 VTEQD--------PGHADA-----------------------------------------------FYNAGVTYAYKENR 209 (243)
T ss_dssp HHHHC--------TTCHHH-----------------------------------------------HHHHHHHHHHTTCT
T ss_pred HHHhC--------cccHHH-----------------------------------------------HHHHHHHHHHccCH
Confidence 88743 32 222 33455666677999
Q ss_pred hHHHHHHHhchhCC
Q 043191 300 KIARELFQSLPRAG 313 (414)
Q Consensus 300 ~~a~~~~~~m~~~g 313 (414)
++|...++++.+..
T Consensus 210 ~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 210 EKALEMLDKAIDIQ 223 (243)
T ss_dssp THHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccC
Confidence 99999999887754
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=6.6e-12 Score=107.52 Aligned_cols=225 Identities=9% Similarity=-0.100 Sum_probs=184.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCcchHHHHHHHHHHcCCCCCHHhH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK----MGRVSHGFVVLGRILRSCFTPDAVTF 163 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 163 (414)
.+..++..+...+...|++++|++.|++..+. -+...+..+...|.. .+++++|.+.|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 46778888999999999999999999998873 256778888889999 999999999999999876 77888
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHcCCCCCCccccCc
Q 043191 164 TSLIKDLCA----ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEFGVVCEPD 235 (414)
Q Consensus 164 ~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~p~ 235 (414)
..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---------~ 145 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---------D 145 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---------C
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---------c
Confidence 889999999 999999999999998875 77888899999999 999999999999998754 2
Q ss_pred hhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHh----cCChhHHHHHHHhchh
Q 043191 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCK----ISKLKIARELFQSLPR 311 (414)
Q Consensus 236 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 311 (414)
...+.. +...|.. .+++++|...|++..+
T Consensus 146 ~~a~~~-----------------------------------------------lg~~~~~~~~~~~~~~~A~~~~~~a~~ 178 (273)
T 1ouv_A 146 GDGCTI-----------------------------------------------LGSLYDAGRGTPKDLKKALASYDKACD 178 (273)
T ss_dssp HHHHHH-----------------------------------------------HHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHH-----------------------------------------------HHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 223322 2333333 5888999999988877
Q ss_pred CCCCCCHhhHHHHHHHHHh----cCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 043191 312 AGLMPNVVTYNILIRGLCN----DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCK----IGRVSSGFVIFG 383 (414)
Q Consensus 312 ~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~ 383 (414)
.+ +...+..+...|.. .+++++|.. .+++..+.+ +...+..+...|.. .+++++|.+.|+
T Consensus 179 ~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~------~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~ 246 (273)
T 1ouv_A 179 LK---DSPGCFNAGNMYHHGEGATKNFKEALA------RYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFK 246 (273)
T ss_dssp TT---CHHHHHHHHHHHHHTCSSCCCHHHHHH------HHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCCccHHHHHH------HHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 64 56677778888888 888888888 888888764 36777778888888 899999999999
Q ss_pred hhhhCC
Q 043191 384 RILPSC 389 (414)
Q Consensus 384 ~m~~~g 389 (414)
+..+.|
T Consensus 247 ~a~~~~ 252 (273)
T 1ouv_A 247 KGCKLG 252 (273)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 988865
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.5e-13 Score=114.11 Aligned_cols=216 Identities=7% Similarity=-0.011 Sum_probs=179.6
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 043191 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC--ELD----VFTY 198 (414)
Q Consensus 125 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~ 198 (414)
...+..+...+...|++++|.+.|++..+.. .+..++..+..++...|++++|.+.+++..+..- .++ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888899999999999999999999887 7889999999999999999999999999876431 112 5788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhh
Q 043191 199 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVR 278 (414)
Q Consensus 199 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 278 (414)
..+...|...|++++|...|++... ..|+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~--------~~~~~~----------------------------------------- 113 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLT--------EHRTAD----------------------------------------- 113 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--------HCCCHH-----------------------------------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh--------cCchhH-----------------------------------------
Confidence 9999999999999999999999987 334421
Q ss_pred hccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCC
Q 043191 279 VQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD 358 (414)
Q Consensus 279 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~ 358 (414)
.+.+.|++++|...++++...... +...+..+...+...|++++|.. .+++..+.. +.+
T Consensus 114 -------------~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~------~~~~a~~~~-~~~ 172 (258)
T 3uq3_A 114 -------------ILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVK------AYTEMIKRA-PED 172 (258)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHC-TTC
T ss_pred -------------HHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHH------HHHHHHhcC-ccc
Confidence 123337788999999988775322 56678888999999999999988 999988754 236
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCcccc
Q 043191 359 LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 359 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 413 (414)
...|..+...|...|++++|...+++.++.. ..+...|..+..+|.+.|++++|
T Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 8889999999999999999999999999863 33588999999999999999876
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=6.4e-13 Score=109.62 Aligned_cols=200 Identities=13% Similarity=-0.024 Sum_probs=142.1
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHH
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (414)
+++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3566778888888899999999999999887653 2367788888888899999999999999888875 4467788888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCc
Q 043191 167 IKDLCAE-----------SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD 235 (414)
Q Consensus 167 i~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~ 235 (414)
...+... |++++|+..|++..+.. +-+...|..+..+|...|++++|+..|++..+. ..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~~ 150 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL--------EDT 150 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------ccc
Confidence 8888888 99999999999888764 345778888888999999999999999988762 222
Q ss_pred hhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCC
Q 043191 236 AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM 315 (414)
Q Consensus 236 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 315 (414)
... +..+..+|...|++++|+..|++..+....
T Consensus 151 ~~~-----------------------------------------------~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 183 (217)
T 2pl2_A 151 PEI-----------------------------------------------RSALAELYLSMGRLDEALAQYAKALEQAPK 183 (217)
T ss_dssp HHH-----------------------------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred hHH-----------------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 222 233445556668888888888887775433
Q ss_pred CCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHH
Q 043191 316 PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351 (414)
Q Consensus 316 p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~ 351 (414)
+...+..+...+...|++++|.. .+++..
T Consensus 184 -~~~~~~~la~~~~~~g~~~~A~~------~~~~~~ 212 (217)
T 2pl2_A 184 -DLDLRVRYASALLLKGKAEEAAR------AAALEH 212 (217)
T ss_dssp -CHHHHHHHHHHHTC---------------------
T ss_pred -ChHHHHHHHHHHHHccCHHHHHH------HHHHHh
Confidence 56777778888888888888877 666543
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.7e-12 Score=109.70 Aligned_cols=160 Identities=11% Similarity=0.068 Sum_probs=134.9
Q ss_pred CCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCc
Q 043191 62 EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV 141 (414)
Q Consensus 62 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 141 (414)
..+...|++++|++.|+.+....+ .+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHH
Confidence 345678999999999999988875 678889999999999999999999999987663 23677888899999999999
Q ss_pred chHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043191 142 SHGFVVLGRILRSCFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 220 (414)
++|.++++++.+.+..| +...+..+...+...|++++|.+.|++..+.. +.+..++..+...|...|++++|...+++
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999988733334 56778888899999999999999999988764 44678888999999999999999999999
Q ss_pred HHcCC
Q 043191 221 MANGN 225 (414)
Q Consensus 221 m~~~~ 225 (414)
+.+..
T Consensus 201 ~~~~~ 205 (252)
T 2ho1_A 201 FAQGG 205 (252)
T ss_dssp HHTTS
T ss_pred HHHhC
Confidence 88743
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.7e-12 Score=107.46 Aligned_cols=133 Identities=10% Similarity=-0.043 Sum_probs=63.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043191 89 PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168 (414)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 168 (414)
+...|..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34445555555555555555555555554431 1234444555555555555555555555554442 223444444455
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 169 DLCAE-SRIMEAAALFTKLRVFGCELD-VFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 169 ~~~~~-g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...|+++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555 555555555555444111121 33444444444555555555555544443
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=1.7e-12 Score=116.01 Aligned_cols=250 Identities=6% Similarity=-0.014 Sum_probs=189.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-cchHHHHHHHHHHcCCCCCHHhHHHHH
Q 043191 89 PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR-VSHGFVVLGRILRSCFTPDAVTFTSLI 167 (414)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (414)
+..+|+.+...+.+.|++++|++.|++..+.. +-+...|+.+..++...|+ +++|+..|++.++.. +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 35678888999999999999999999988763 2267788999999999996 999999999999886 44788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCc-hhhHHHHHHHH
Q 043191 168 KDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD-AITYSTIIDGL 246 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~-~~~~~~li~~~ 246 (414)
.++...|++++|+..|+++.... +-+...|..+..++.+.|++++|+..|+++.+. .|+ ...|..+..++
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--------~P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--------DVRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Confidence 99999999999999999999875 457889999999999999999999999999984 343 34444444433
Q ss_pred HhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHH-----HHHHHhchhCCCCCCHhhH
Q 043191 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIA-----RELFQSLPRAGLMPNVVTY 321 (414)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-----~~~~~~m~~~g~~p~~~~~ 321 (414)
... .|..++| +..|++....... +...|
T Consensus 245 ~~l----------------------------------------------~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~ 277 (382)
T 2h6f_A 245 SNT----------------------------------------------TGYNDRAVLEREVQYTLEMIKLVPH-NESAW 277 (382)
T ss_dssp HHT----------------------------------------------TCSCSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHh----------------------------------------------cCcchHHHHHHHHHHHHHHHHHCCC-CHHHH
Confidence 331 3444555 4777777765433 56788
Q ss_pred HHHHHHHHhcC--ChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHhh-hhCC
Q 043191 322 NILIRGLCNDG--QMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIG---------RVSSGFVIFGRI-LPSC 389 (414)
Q Consensus 322 ~~li~~~~~~g--~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~a~~~~~~m-~~~g 389 (414)
+.+...+...| ++++|.. .+.++ +. ...+...+..+...|.+.| ..++|+++++++ .+.
T Consensus 278 ~~l~~ll~~~g~~~~~~a~~------~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~- 348 (382)
T 2h6f_A 278 NYLKGILQDRGLSKYPNLLN------QLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK- 348 (382)
T ss_dssp HHHHHHHTTTCGGGCHHHHH------HHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHccCccchHHHHH------HHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh-
Confidence 88888888877 4666666 77777 32 2345778888888888864 258899999998 663
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 043191 390 FTPD-AVTFTSLIKILEI 406 (414)
Q Consensus 390 ~~p~-~~~~~~li~~~~~ 406 (414)
.|. ...|..+...+..
T Consensus 349 -DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 349 -DTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp -CGGGHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHH
Confidence 444 4556656555543
No 44
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=1.5e-11 Score=115.78 Aligned_cols=314 Identities=13% Similarity=0.102 Sum_probs=201.2
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCCcchHH
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCF-CKMGRVSHGF 145 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~~~~~~a~ 145 (414)
.|++++|..+|+.+....| .+...|...+..+.+.|++++|..+|+++... .|+...|...+... ...|+.+.|.
T Consensus 25 ~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFP--SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred hCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHH
Confidence 4789999999999988776 67888999999999999999999999998876 46766666555422 3445555554
Q ss_pred H----HHHHHHHc-CCCC-CHHhHHHHHHHHHh---------cCCHHHHHHHHHHHHHcC--------------------
Q 043191 146 V----VLGRILRS-CFTP-DAVTFTSLIKDLCA---------ESRIMEAAALFTKLRVFG-------------------- 190 (414)
Q Consensus 146 ~----~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g-------------------- 190 (414)
+ +|+..... |..| +...|...+....+ .|+++.|..+|++.....
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 4 44444332 3322 33444444444332 345555555554443310
Q ss_pred -------------------------------------CC-----------------------------------------
Q 043191 191 -------------------------------------CE----------------------------------------- 192 (414)
Q Consensus 191 -------------------------------------~~----------------------------------------- 192 (414)
++
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 01
Q ss_pred ---------CCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhh
Q 043191 193 ---------LDVFTYNTLINGLCR-------TGHTI-------VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249 (414)
Q Consensus 193 ---------~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~ 249 (414)
.+...|..+...+.+ .|+++ +|..+|++..+.- .+-+...|..+...+.
T Consensus 261 y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~------~p~~~~l~~~~~~~~~-- 332 (530)
T 2ooe_A 261 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LKKNMLLYFAYADYEE-- 332 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT------CSSCHHHHHHHHHHHH--
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh------CcccHHHHHHHHHHHH--
Confidence 112222222222222 34443 4445554444311 1112333333333332
Q ss_pred cCCCchhHHHHHhhccchhhHhhhhh-hhhhcccc--ccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHH
Q 043191 250 AGSANFLGFSCMASFSALNKMAFYFP-LVRVQCLC--LNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326 (414)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 326 (414)
..|++++|..+++ .....|+. ..|..++..+.+.|++++|.++|++..+.... +...|.....
T Consensus 333 -------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~ 398 (530)
T 2ooe_A 333 -------------SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAAL 398 (530)
T ss_dssp -------------HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHH
T ss_pred -------------hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHH
Confidence 4588999999999 66666553 47888899999999999999999998875322 2333332222
Q ss_pred -HHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCC-CCCC--HHHHHHHHH
Q 043191 327 -GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSC-FTPD--AVTFTSLIK 402 (414)
Q Consensus 327 -~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~ 402 (414)
.+...|+.++|.. +|+...+.. +-+...|..++..+.+.|+.++|..+|++.+..+ ..|+ ...|...+.
T Consensus 399 ~~~~~~~~~~~A~~------~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 399 MEYYCSKDKSVAFK------IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHTCCHHHHHH------HHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHcCChhHHHH------HHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 2346899988888 999887752 2257899999999999999999999999999863 2333 558888898
Q ss_pred HHHHcCCcccc
Q 043191 403 ILEINSFFRQV 413 (414)
Q Consensus 403 ~~~~~g~~~~a 413 (414)
.....|+.+.+
T Consensus 472 ~e~~~G~~~~~ 482 (530)
T 2ooe_A 472 FESNIGDLASI 482 (530)
T ss_dssp HHHHSSCHHHH
T ss_pred HHHHcCCHHHH
Confidence 88888987654
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=2.1e-12 Score=106.85 Aligned_cols=154 Identities=11% Similarity=-0.013 Sum_probs=71.9
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-CCcchH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM-GRVSHG 144 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~~~a 144 (414)
..|++++|++.|+.+....+ .+...|..+...+...|++++|.+.++++.+.. +.+..++..+...+... |++++|
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A 96 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKSDP--KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAES 96 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHH
Confidence 34555555555555544433 334444555555555555555555555544331 11344444444555555 555555
Q ss_pred HHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 145 FVVLGRILRSCFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 145 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
...++.+.+.+..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|...+++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 97 MAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555544421111 13344444445555555555555555544432 22344444455555555555555555554443
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=8.7e-12 Score=111.44 Aligned_cols=241 Identities=8% Similarity=-0.041 Sum_probs=184.0
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKH-YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
..|++++|++.|+.+....| .+..+|+.+..++...|+ +++|+..|++..+.. +-+...|..+..++...|++++|
T Consensus 109 ~~g~~~~Al~~~~~al~l~P--~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eA 185 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELNA--ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQE 185 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HCCChHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHH
Confidence 45889999999999999987 788999999999999997 999999999998763 22678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHH-----HHHH
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR-TGHTIVA-----LNLF 218 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a-----~~~~ 218 (414)
+..|+++++.. +-+...|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.+ .|..++| +..|
T Consensus 186 l~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~ 263 (382)
T 2h6f_A 186 LEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT 263 (382)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 99999999986 5588999999999999999999999999999875 4578899999999999 6665777 4778
Q ss_pred HHHHcCCCCCCccccCch-hhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcC
Q 043191 219 EEMANGNGEFGVVCEPDA-ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297 (414)
Q Consensus 219 ~~m~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~ 297 (414)
++... +.|+. ..|..+. ..+...|
T Consensus 264 ~~Al~--------l~P~~~~a~~~l~-----------------------------------------------~ll~~~g 288 (382)
T 2h6f_A 264 LEMIK--------LVPHNESAWNYLK-----------------------------------------------GILQDRG 288 (382)
T ss_dssp HHHHH--------HSTTCHHHHHHHH-----------------------------------------------HHHTTTC
T ss_pred HHHHH--------HCCCCHHHHHHHH-----------------------------------------------HHHHccC
Confidence 88776 44543 3333333 3333345
Q ss_pred --ChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChh--hhh-hhhhHHHHHHHH-HhCCCCCC-HHHHHHHHHHHH
Q 043191 298 --KLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMD--ETK-HYETVFLLFKRL-NSTGLFPD-LYTYNILINCFC 370 (414)
Q Consensus 298 --~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~-~~~~a~~~~~~m-~~~~~~p~-~~~~~~li~~~~ 370 (414)
++++|++.+.++ +.. ..+...+..+...|.+.|+.. .+. .+++|+.+++++ .+. .|. ...|..+...+.
T Consensus 289 ~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 289 LSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp GGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 578888888887 332 235678888888888875210 001 123344499998 554 343 455655555443
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=2e-12 Score=110.52 Aligned_cols=235 Identities=11% Similarity=-0.000 Sum_probs=177.9
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCcc
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD--RYTYNILINCFCKMGRVS 142 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~ 142 (414)
...|++++|+..|+.+.+..| .+..++..+..++...|++++|++.|++..+.+..++ ..+|..+..++...|+++
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKKY--NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTTC--CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence 356899999999999999876 5667899999999999999999999999987432222 334888999999999999
Q ss_pred hHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043191 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222 (414)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 222 (414)
+|.+.|++..+.. +.+..++..+...|...|++++|.+.|++..+.. +.+..+|..+...+...+++++|.+.|++..
T Consensus 92 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 92 LAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999875 4467899999999999999999999999988763 4467777777734445569999999999999
Q ss_pred cCCCCCCccccCc-hhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh---ccc------cccHHHHHH
Q 043191 223 NGNGEFGVVCEPD-AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV---QCL------CLNFLCLID 291 (414)
Q Consensus 223 ~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~---~~~------~~~~~~li~ 291 (414)
+. .|+ ...+..+...+...++. ...++|...+. .... .++ ...|..+..
T Consensus 170 ~~--------~p~~~~~~~~~~~~~~~~~~~------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 229 (272)
T 3u4t_A 170 EL--------KPNIYIGYLWRARANAAQDPD------------TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY 229 (272)
T ss_dssp HH--------STTCHHHHHHHHHHHHHHSTT------------CSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred Hh--------CccchHHHHHHHHHHHHcCcc------------hhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 84 444 45555566666554331 11334444444 2222 122 256777889
Q ss_pred HHHhcCChhHHHHHHHhchhCCCCCCHhhHHHH
Q 043191 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNIL 324 (414)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 324 (414)
.|...|++++|.+.|++..+.... +...+..+
T Consensus 230 ~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l 261 (272)
T 3u4t_A 230 YYTINRDKVKADAAWKNILALDPT-NKKAIDGL 261 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcc-HHHHHHHh
Confidence 999999999999999999876432 44444433
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=8.4e-13 Score=110.77 Aligned_cols=202 Identities=11% Similarity=0.053 Sum_probs=151.4
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHH
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (414)
......|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 3556778888899999999999999999998753 3367888889999999999999999999998875 4578889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCc-hhhHHHHHHH
Q 043191 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD-AITYSTIIDG 245 (414)
Q Consensus 167 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~-~~~~~~li~~ 245 (414)
...+...|++++|.++++++.+.. +.+...+..+...+.+.|++++|...++++.+.. |+ ...
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~------- 161 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--------ENDTEA------- 161 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------TTCHHH-------
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CccHHH-------
Confidence 999999999999999999998875 4578889999999999999999999999998743 32 222
Q ss_pred HHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHH
Q 043191 246 LCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILI 325 (414)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 325 (414)
+..+...+.+.|++++|...|+++.+... .+..++..+.
T Consensus 162 ----------------------------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 200 (243)
T 2q7f_A 162 ----------------------------------------RFQFGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAG 200 (243)
T ss_dssp ----------------------------------------HHHHHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 33455666777999999999999877643 3678899999
Q ss_pred HHHHhcCChhhhhhhhhHHHHHHHHHhC
Q 043191 326 RGLCNDGQMDETKHYETVFLLFKRLNST 353 (414)
Q Consensus 326 ~~~~~~g~~~~a~~~~~a~~~~~~m~~~ 353 (414)
..|...|++++|.. .++++.+.
T Consensus 201 ~~~~~~~~~~~A~~------~~~~~~~~ 222 (243)
T 2q7f_A 201 VTYAYKENREKALE------MLDKAIDI 222 (243)
T ss_dssp HHHHHTTCTTHHHH------HHHHHHHH
T ss_pred HHHHHccCHHHHHH------HHHHHHcc
Confidence 99999999999998 99998875
No 49
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=8.6e-12 Score=115.68 Aligned_cols=318 Identities=10% Similarity=-0.074 Sum_probs=185.6
Q ss_pred CCCCHHhHHHHHHHHHhc-------CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCC-CHhhHHHH
Q 043191 66 TSITPNEALCVFDYMLNM-------RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-----G-LFP-DRYTYNIL 131 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~~~~~l 131 (414)
..|+.++|++.|+...+. ........+|+.+..+|...|++++|...+++..+. + ..+ ...++..+
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 458899999999876542 111245678899999999999999999998876532 1 111 34566655
Q ss_pred HHHHHhc--CCcchHHHHHHHHHHcCCCCCHHhHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043191 132 INCFCKM--GRVSHGFVVLGRILRSCFTPDAVTFTSLIKD---LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206 (414)
Q Consensus 132 i~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 206 (414)
..++... +++++|.+.|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +.+..++..+...+.
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLH 220 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHH
Confidence 5555544 46889999999888764 3344555444444 344567777888887776654 334555655555444
Q ss_pred h----cCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhcc
Q 043191 207 R----TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQC 281 (414)
Q Consensus 207 ~----~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~ 281 (414)
. .|++++|.+++++..... +.+...+..+...+... ++.++|...+. .....|
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~lg~~~~~~---------------~~~~~A~~~~~~al~~~p 278 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKA-------PGVTDVLRSAAKFYRRK---------------DEPDKAIELLKKALEYIP 278 (472)
T ss_dssp HCC------CHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHHHHST
T ss_pred HHHhhhhHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHc---------------CchHHHHHHHHHHHHhCC
Confidence 3 356677888888776633 23344555555555553 55666666665 444333
Q ss_pred c-cccHHHHHHHHHhc-------------------CChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhh
Q 043191 282 L-CLNFLCLIDGLCKI-------------------SKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYE 341 (414)
Q Consensus 282 ~-~~~~~~li~~~~~~-------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 341 (414)
+ ...+..+..+|... +..++|...+++..+.... +..++..+...+...|++++|..
T Consensus 279 ~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~-- 355 (472)
T 4g1t_A 279 NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEY-- 355 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHH--
T ss_pred ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHH--
Confidence 2 33444443333221 2245566666655544322 34556666667777777766666
Q ss_pred hHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHhhhhCC-----------------------CCCCHH
Q 043191 342 TVFLLFKRLNSTGLFPDLY--TYNILIN-CFCKIGRVSSGFVIFGRILPSC-----------------------FTPDAV 395 (414)
Q Consensus 342 ~a~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~g-----------------------~~p~~~ 395 (414)
.|++..+....+... .+..+.. .....|+.++|+..|++.++.. -..+..
T Consensus 356 ----~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 356 ----YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp ----HHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTT
T ss_pred ----HHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 666666543322211 1122211 2235566777776666655421 123467
Q ss_pred HHHHHHHHHHHcCCccccC
Q 043191 396 TFTSLIKILEINSFFRQVA 414 (414)
Q Consensus 396 ~~~~li~~~~~~g~~~~a~ 414 (414)
+|..+..+|...|++++|.
T Consensus 432 ~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHcCCHHHHH
Confidence 8899999999999999874
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=3.3e-13 Score=122.43 Aligned_cols=293 Identities=11% Similarity=-0.006 Sum_probs=199.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhc
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPP--VTSFNILFGCLAKTKHYDTVLSLFKRLNLT----GLFP-DRYTYNILINCFCKM 138 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~ 138 (414)
..|++++|+..|+.+....+..+. ..+|..+...+...|++++|...+++.... +..| ...++..+...+...
T Consensus 21 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 21 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 457888899999888887651111 356778888888888988888888875432 2222 245677778888888
Q ss_pred CCcchHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHc----
Q 043191 139 GRVSHGFVVLGRILRSCF-TPD----AVTFTSLIKDLCAESR--------------------IMEAAALFTKLRVF---- 189 (414)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~---- 189 (414)
|++++|...+++..+... ..+ ..++..+...|...|+ +++|.+.+++....
T Consensus 101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 180 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888887765310 011 3467777788888888 88888888776442
Q ss_pred CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchh
Q 043191 190 GCE-LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268 (414)
Q Consensus 190 g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (414)
+.. ....++..+...|...|++++|...+++..+.. ++...-...
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~-------------------------- 226 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--------KEFGDKAAE-------------------------- 226 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH--------HHTTCHHHH--------------------------
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--------HhcCCcHHH--------------------------
Confidence 111 123467778888888888888888888877522 111100001
Q ss_pred hHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhC----CCCC-CHhhHHHHHHHHHhcCChhhhhhhhhH
Q 043191 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA----GLMP-NVVTYNILIRGLCNDGQMDETKHYETV 343 (414)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~a 343 (414)
...+..+...|...|++++|...+++.... +..+ ...++..+...|...|++++|..
T Consensus 227 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---- 288 (406)
T 3sf4_A 227 --------------RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID---- 288 (406)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH----
T ss_pred --------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH----
Confidence 113555777788889999999999887542 1111 14577888889999999999988
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCC-CCHHHHHHHHHHHHHcCCccc
Q 043191 344 FLLFKRLNST----GLFP-DLYTYNILINCFCKIGRVSSGFVIFGRILPS----CFT-PDAVTFTSLIKILEINSFFRQ 412 (414)
Q Consensus 344 ~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~ 412 (414)
.+++..+. +-.+ ...++..+...|...|++++|...+++..+. |.. ....++..+...+...|+...
T Consensus 289 --~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 289 --YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 66665542 1111 1557788888999999999999999987653 211 225677788888888887643
No 51
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=2.1e-11 Score=113.04 Aligned_cols=305 Identities=10% Similarity=-0.069 Sum_probs=203.4
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHc----
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-----G--LFP-DRYTYNILINCFCKMGRVSHGFVVLGRILRS---- 154 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 154 (414)
......||.|...+...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 445678999999999999999999999886431 1 123 4578999999999999999999999887653
Q ss_pred -C-CC-CCHHhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHcCCC
Q 043191 155 -C-FT-PDAVTFTSLIKDLCAE--SRIMEAAALFTKLRVFGCELDVFTYNTLING---LCRTGHTIVALNLFEEMANGNG 226 (414)
Q Consensus 155 -~-~~-~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~ 226 (414)
+ .. ....++..+..++... +++++|.+.|++..+.. +-+...+..+..+ +...++.++|++.+++..+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~--- 203 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR--- 203 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH---
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh---
Confidence 1 11 2345666665566554 57999999999998764 2345555555444 4456788899999998887
Q ss_pred CCCccccCc-hhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHH
Q 043191 227 EFGVVCEPD-AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIAR 303 (414)
Q Consensus 227 ~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~ 303 (414)
+.|+ ...+..+...+...+. ..+..+++...++ .... +.+...+..+...|...|++++|.
T Consensus 204 -----l~p~~~~~~~~l~~~~~~~~~-----------~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~ 267 (472)
T 4g1t_A 204 -----LNPDNQYLKVLLALKLHKMRE-----------EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAI 267 (472)
T ss_dssp -----HCSSCHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----cCCcchHHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHH
Confidence 3444 3444444444433321 3467788888887 4444 555677888999999999999999
Q ss_pred HHHHhchhCCCCCCHhhHHHHHHHHHhcCCh------------hhh-hhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043191 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQM------------DET-KHYETVFLLFKRLNSTGLFPDLYTYNILINCFC 370 (414)
Q Consensus 304 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~------------~~a-~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 370 (414)
..+++..+.... +..++..+..+|...+.. ..+ ..++.|...++...+.. +.+...+..+...|.
T Consensus 268 ~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 268 ELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 999998876433 556666665555432211 111 11344555777777643 224567888899999
Q ss_pred hcCCHHHHHHHHHhhhhCCCCCCHH--HHHHHHH-HHHHcCCcccc
Q 043191 371 KIGRVSSGFVIFGRILPSCFTPDAV--TFTSLIK-ILEINSFFRQV 413 (414)
Q Consensus 371 ~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~-~~~~~g~~~~a 413 (414)
..|++++|...|++.++....+... .+..+.. .+.+.|++++|
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 391 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKA 391 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999864333221 2233322 23456666655
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=5.8e-13 Score=121.22 Aligned_cols=268 Identities=12% Similarity=0.010 Sum_probs=193.6
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPV----TSFNILFGCLAKTKHYDTVLSLFKRLNLT----GLFP-DRYTYNILINCF 135 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~ 135 (414)
...|++++|+..|+.+....+ .+. .+|..+...+...|++++|...|++..+. +..| ...++..+...|
T Consensus 59 ~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 136 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL 136 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcc--cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 355899999999999998865 333 47888889999999999999999886543 2122 346678888889
Q ss_pred HhcCCcchHHHHHHHHHHc----C-CCCCHHhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHc----
Q 043191 136 CKMGRVSHGFVVLGRILRS----C-FTPDAVTFTSLIKDLCAESR-----------------IMEAAALFTKLRVF---- 189 (414)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~---- 189 (414)
...|++++|...+++..+. + ......++..+...|...|+ +++|.+.+++....
T Consensus 137 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 216 (411)
T 4a1s_A 137 KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL 216 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999887664 1 12234577888888999999 89998888876542
Q ss_pred CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchh
Q 043191 190 GCE-LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268 (414)
Q Consensus 190 g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (414)
+-. ....++..+...|...|++++|...+++..+. .++........
T Consensus 217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~------------------------- 263 (411)
T 4a1s_A 217 GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI--------AREFGDRAAER------------------------- 263 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHTCHHHHH-------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------HHhcCCcHHHH-------------------------
Confidence 111 12357788888899999999999999888762 22211111111
Q ss_pred hHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCC-----CCHhhHHHHHHHHHhcCChhhhhhhhhH
Q 043191 269 KMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM-----PNVVTYNILIRGLCNDGQMDETKHYETV 343 (414)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~a 343 (414)
..+..+...|...|++++|...+++....... ....++..+...|...|++++|..
T Consensus 264 ---------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---- 324 (411)
T 4a1s_A 264 ---------------RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIE---- 324 (411)
T ss_dssp ---------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH----
T ss_pred ---------------HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH----
Confidence 12455777888889999999999887543110 124677888889999999999988
Q ss_pred HHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 344 FLLFKRLNST----GL-FPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 344 ~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
.+++..+. +. .....++..+...|...|++++|...+++..+.
T Consensus 325 --~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 325 --YHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 66665542 11 112457788889999999999999999998763
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=7.4e-11 Score=100.92 Aligned_cols=213 Identities=12% Similarity=-0.047 Sum_probs=176.4
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043191 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA----ESRIMEAAALFTKLRVFGCELDVFTYN 199 (414)
Q Consensus 124 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~ 199 (414)
+..++..+...+...|++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677888888999999999999999998843 56778888888999 999999999999998875 778888
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh
Q 043191 200 TLINGLCR----TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP 275 (414)
Q Consensus 200 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 275 (414)
.+...|.. .+++++|...|++..+.+ +...+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~----------------------------------- 114 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCA----------------------------------- 114 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHH-----------------------------------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHH-----------------------------------
Confidence 89999999 999999999999988744 222332
Q ss_pred hhhhccccccHHHHHHHHHh----cCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHh----cCChhhhhhhhhHHHHH
Q 043191 276 LVRVQCLCLNFLCLIDGLCK----ISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCN----DGQMDETKHYETVFLLF 347 (414)
Q Consensus 276 ~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~a~~~~ 347 (414)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.. .+
T Consensus 115 ------------~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~------~~ 173 (273)
T 1ouv_A 115 ------------SLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALA------SY 173 (273)
T ss_dssp ------------HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH------HH
T ss_pred ------------HHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHH------HH
Confidence 34444455 699999999999998875 56777788888887 889888888 99
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHH----cCCcccc
Q 043191 348 KRLNSTGLFPDLYTYNILINCFCK----IGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI----NSFFRQV 413 (414)
Q Consensus 348 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a 413 (414)
++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.+ .+++++|
T Consensus 174 ~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 174 DKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 9988874 57788888899999 999999999999999874 37788888999998 8888876
No 54
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.48 E-value=3.1e-11 Score=119.81 Aligned_cols=269 Identities=13% Similarity=0.123 Sum_probs=189.5
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 043191 64 DITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143 (414)
Q Consensus 64 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 143 (414)
+...|.+++|..+|++.. -...+.+.++. ..+++++|.++.++.. +..+|..+..++...|++++
T Consensus 1059 ai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHH
Confidence 345677888888887752 22222333332 6677888888777552 45677788888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
|...|.+. -|...|..++.++.+.|++++|.++|...++.. ++....+.++.+|++.+++++.... .+
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh
Confidence 88887553 366777778888888888888888887766553 3333344577778888777753333 21
Q ss_pred CCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHH
Q 043191 224 GNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAR 303 (414)
Q Consensus 224 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 303 (414)
.++...|..+...|.. .|++++|...+... ..|..+..+|++.|++++|.
T Consensus 1192 ---------~~n~ad~~~iGd~le~---------------eg~YeeA~~~Y~kA------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1192 ---------GPNNAHIQQVGDRCYD---------------EKMYDAAKLLYNNV------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred ---------CCCHHHHHHHHHHHHh---------------cCCHHHHHHHHHhh------hHHHHHHHHHHHhCCHHHHH
Confidence 2344455555555544 47888888888832 36899999999999999999
Q ss_pred HHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043191 304 ELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFG 383 (414)
Q Consensus 304 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 383 (414)
+.+++.. +..+|..+-.+|...|++..|.. .... +..++..+..++..|.+.|.+++|+.+++
T Consensus 1242 EaarKA~------n~~aWkev~~acve~~Ef~LA~~------cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1242 DGARKAN------STRTWKEVCFACVDGKEFRLAQM------CGLH-----IVVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHHHHhC------CHHHHHHHHHHHhhhhHHHHHHH------HHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9998763 67889999999999999888876 4433 33477788899999999999999999998
Q ss_pred hhhhCCCCCCHHHHHHHHHHHHHc
Q 043191 384 RILPSCFTPDAVTFTSLIKILEIN 407 (414)
Q Consensus 384 ~m~~~g~~p~~~~~~~li~~~~~~ 407 (414)
..+... .-....|+-|...|++.
T Consensus 1305 ~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1305 AALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHhccC-hhHhHHHHHHHHHHHhC
Confidence 887643 33455676666666654
No 55
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=4.8e-11 Score=112.43 Aligned_cols=141 Identities=12% Similarity=0.082 Sum_probs=108.1
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCC
Q 043191 77 FDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF 156 (414)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 156 (414)
|+...+..| .+..+|..++.. .+.|++++|..+|+++.+.. +-+...|..++..+.+.|+++.|.++|++.+..
T Consensus 2 le~al~~~P--~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-- 75 (530)
T 2ooe_A 2 AEKKLEENP--YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-- 75 (530)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--
T ss_pred hhhHhhhCC--CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Confidence 445555555 688899999984 78999999999999998762 336778999999999999999999999999887
Q ss_pred CCCHHhHHHHHHHH-HhcCCHHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHH
Q 043191 157 TPDAVTFTSLIKDL-CAESRIMEAAA----LFTKLRVF-GCEL-DVFTYNTLINGLCR---------TGHTIVALNLFEE 220 (414)
Q Consensus 157 ~~~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~ 220 (414)
.|+...|...+... ...|+.++|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 36877777777533 34577766655 77766543 5443 56778777776654 6889999999999
Q ss_pred HHc
Q 043191 221 MAN 223 (414)
Q Consensus 221 m~~ 223 (414)
..+
T Consensus 156 al~ 158 (530)
T 2ooe_A 156 GCV 158 (530)
T ss_dssp HTT
T ss_pred HHh
Confidence 886
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=1.4e-12 Score=114.77 Aligned_cols=267 Identities=12% Similarity=0.019 Sum_probs=189.5
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPP----VTSFNILFGCLAKTKHYDTVLSLFKRLNLT----GLFP-DRYTYNILINCFC 136 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~ 136 (414)
..|++++|+..|+.+....+ .+ ...+..+...+...|++++|.+.+++.... +..| ...++..+...+.
T Consensus 17 ~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 94 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 94 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 45889999999999988765 33 467888888999999999999998886432 2122 2456778888888
Q ss_pred hcCCcchHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHc--
Q 043191 137 KMGRVSHGFVVLGRILRSCF-TPD----AVTFTSLIKDLCAESR--------------------IMEAAALFTKLRVF-- 189 (414)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~-- 189 (414)
..|++++|.+.+++..+... ..+ ..++..+...+...|+ +++|.+.+++....
T Consensus 95 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 95 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888765311 112 3467778888888888 88888888776432
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccc
Q 043191 190 --GC-ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSA 266 (414)
Q Consensus 190 --g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~ 266 (414)
+. .....++..+...+...|++++|...+++..+.. +........
T Consensus 175 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~------------------------ 222 (338)
T 3ro2_A 175 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--------KEFGDKAAE------------------------ 222 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------HHHTCHHHH------------------------
T ss_pred hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------HhcCChHHH------------------------
Confidence 11 1123467778888888999999999988877521 111110001
Q ss_pred hhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCC-CC----HhhHHHHHHHHHhcCChhhhhhhh
Q 043191 267 LNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM-PN----VVTYNILIRGLCNDGQMDETKHYE 341 (414)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~ 341 (414)
...+..+...+...|++++|...+++....... .+ ..++..+...+...|++++|..
T Consensus 223 ----------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-- 284 (338)
T 3ro2_A 223 ----------------RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID-- 284 (338)
T ss_dssp ----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH--
T ss_pred ----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH--
Confidence 113455677788889999999999887542110 11 4577788889999999999988
Q ss_pred hHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 342 TVFLLFKRLNST----GL-FPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 342 ~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
.+++..+. +- .....++..+...|...|++++|...+++..+.
T Consensus 285 ----~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 285 ----YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 66665542 11 112447788889999999999999999998874
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=7.1e-11 Score=102.98 Aligned_cols=217 Identities=16% Similarity=0.119 Sum_probs=163.9
Q ss_pred HhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-------cCCh-------hHHHHHHHHHHhCCCCC-CHhhHHHHHHHH
Q 043191 71 NEALCVFDYMLNMRPSRPPVTSFNILFGCLAK-------TKHY-------DTVLSLFKRLNLTGLFP-DRYTYNILINCF 135 (414)
Q Consensus 71 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 135 (414)
++|+.+|+......| .++..|..++..+.. .|++ ++|..+|++..+. +.| +...|..++..+
T Consensus 33 ~~a~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHH
Confidence 789999999998876 788889888888763 5776 8899999998863 134 556788888888
Q ss_pred HhcCCcchHHHHHHHHHHcCCCCC-HH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChH
Q 043191 136 CKMGRVSHGFVVLGRILRSCFTPD-AV-TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC-RTGHTI 212 (414)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~ 212 (414)
.+.|++++|.++|++.++. .|+ .. .|..+...+.+.|++++|.++|++..+.. +.+...|........ ..|+++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 8999999999999999875 343 33 78888888888999999999999888764 334445544333322 368899
Q ss_pred HHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHH
Q 043191 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292 (414)
Q Consensus 213 ~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~ 292 (414)
+|..+|+...+ ..|+. ...|..++..
T Consensus 187 ~A~~~~~~al~--------~~p~~----------------------------------------------~~~~~~~~~~ 212 (308)
T 2ond_A 187 VAFKIFELGLK--------KYGDI----------------------------------------------PEYVLAYIDY 212 (308)
T ss_dssp HHHHHHHHHHH--------HHTTC----------------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHH--------hCCCc----------------------------------------------HHHHHHHHHH
Confidence 99999888876 33332 1224445666
Q ss_pred HHhcCChhHHHHHHHhchhCC-CCC--CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC
Q 043191 293 LCKISKLKIARELFQSLPRAG-LMP--NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353 (414)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~ 353 (414)
+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|.. +++++.+.
T Consensus 213 ~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~------~~~~a~~~ 270 (308)
T 2ond_A 213 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK------VEKRRFTA 270 (308)
T ss_dssp HHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH------HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH------HHHHHHHH
Confidence 677799999999999988863 344 45678888888889999988888 88888764
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.9e-12 Score=112.78 Aligned_cols=247 Identities=13% Similarity=0.003 Sum_probs=165.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHc------
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-------GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS------ 154 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------ 154 (414)
.+..++..+...+...|++++|..+|+++.+. .......++..+...+...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34667888999999999999999999998762 12234567888899999999999999999988764
Q ss_pred CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCC
Q 043191 155 CF-TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF------GCEL-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNG 226 (414)
Q Consensus 155 ~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 226 (414)
+- +....++..+...|...|++++|...|++..+. +-.| ...++..+...|...|++++|.++|++..+...
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 21 234567888999999999999999999988764 2222 356788899999999999999999999876310
Q ss_pred CCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHH
Q 043191 227 EFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELF 306 (414)
Q Consensus 227 ~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 306 (414)
.......|. ....+..+...|...|++++|...+
T Consensus 185 ~~~~~~~~~----------------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~ 218 (311)
T 3nf1_A 185 TKLGPDDPN----------------------------------------------VAKTKNNLASCYLKQGKFKQAETLY 218 (311)
T ss_dssp HTSCTTCHH----------------------------------------------HHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCCCHH----------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 000000111 1122455667778889999999999
Q ss_pred HhchhC-------CCCCCHh-h------HHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043191 307 QSLPRA-------GLMPNVV-T------YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372 (414)
Q Consensus 307 ~~m~~~-------g~~p~~~-~------~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 372 (414)
+++.+. ...+... . +..+...+...+.+.++.. .+....... ..+..++..+...|.+.
T Consensus 219 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~------~~~~~~~~~-~~~~~~~~~la~~~~~~ 291 (311)
T 3nf1_A 219 KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG------WYKACKVDS-PTVTTTLKNLGALYRRQ 291 (311)
T ss_dssp HHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------------C-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH------HHhhcCCCC-chHHHHHHHHHHHHHHC
Confidence 887652 1112211 1 2222333344445555555 777666532 22456788999999999
Q ss_pred CCHHHHHHHHHhhhh
Q 043191 373 GRVSSGFVIFGRILP 387 (414)
Q Consensus 373 g~~~~a~~~~~~m~~ 387 (414)
|++++|.++|++.++
T Consensus 292 g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 292 GKFEAAETLEEAAMR 306 (311)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998875
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=1.7e-12 Score=118.06 Aligned_cols=269 Identities=15% Similarity=0.024 Sum_probs=195.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCcchHHHHHHHHHHc----C-CCCCH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR----YTYNILINCFCKMGRVSHGFVVLGRILRS----C-FTPDA 160 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 160 (414)
...+..+...+...|++++|+..|++..+.+.. +. .+|..+...+...|++++|.+.+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344556777889999999999999998876321 32 46888899999999999999999988764 1 12345
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCC-----------------hHHHHHHH
Q 043191 161 VTFTSLIKDLCAESRIMEAAALFTKLRVF----G-CELDVFTYNTLINGLCRTGH-----------------TIVALNLF 218 (414)
Q Consensus 161 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~ 218 (414)
.++..+...|...|++++|...+++.... + ......++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888889999999999999999987653 1 12234578888999999999 78887777
Q ss_pred HHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCC
Q 043191 219 EEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISK 298 (414)
Q Consensus 219 ~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~ 298 (414)
++..+.. +....- ......+..+...|...|+
T Consensus 207 ~~al~~~--------~~~~~~----------------------------------------~~~~~~~~~la~~~~~~g~ 238 (411)
T 4a1s_A 207 QENLKLM--------RDLGDR----------------------------------------GAQGRACGNLGNTYYLLGD 238 (411)
T ss_dssp HHHHHHH--------HHHTCH----------------------------------------HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH--------HHcCCH----------------------------------------HHHHHHHHHHHHHHHHcCC
Confidence 7765421 100000 0011235557778888899
Q ss_pred hhHHHHHHHhchhCCCC-CC----HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC----CCC-CCHHHHHHHHHH
Q 043191 299 LKIARELFQSLPRAGLM-PN----VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST----GLF-PDLYTYNILINC 368 (414)
Q Consensus 299 ~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~ 368 (414)
+++|...+++..+.... ++ ..++..+...|...|++++|.. .+++..+. +.. ....++..+...
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~------~~~~al~~~~~~~~~~~~~~~~~~la~~ 312 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE------HYKRTLALAVELGEREVEAQSCYSLGNT 312 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999987653110 11 2378888899999999999988 66665542 111 125678888899
Q ss_pred HHhcCCHHHHHHHHHhhhhC----CC-CCCHHHHHHHHHHHHHcCCcccc
Q 043191 369 FCKIGRVSSGFVIFGRILPS----CF-TPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 369 ~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a 413 (414)
|...|++++|...+++.++. +. .....++..+...|.+.|++++|
T Consensus 313 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 313 YTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999988764 11 11245888899999999999876
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=2.1e-10 Score=99.99 Aligned_cols=218 Identities=12% Similarity=0.067 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-------hcCCc-------chHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 043191 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFC-------KMGRV-------SHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172 (414)
Q Consensus 107 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 172 (414)
++|..+|++..... +-+...|..++..+. +.|++ ++|..+|++.++.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999987652 336777887777765 35776 8999999999883124466789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhc
Q 043191 173 ESRIMEAAALFTKLRVFGCELD-VF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250 (414)
Q Consensus 173 ~g~~~~a~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 250 (414)
.|++++|.++|++..+. .|+ .. +|..++..+.+.|++++|..+|++..+.. +.+...|..
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~~~~--------- 173 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-------RTRHHVYVT--------- 173 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-------TCCTHHHHH---------
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCCHHHHHH---------
Confidence 99999999999999875 444 33 89999999999999999999999998743 122222211
Q ss_pred CCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHH-HHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHH
Q 043191 251 GSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG-LCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLC 329 (414)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 329 (414)
.... +...|++++|..+|++..+.... +...|..++..+.
T Consensus 174 --------------------------------------~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 214 (308)
T 2ond_A 174 --------------------------------------AALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLS 214 (308)
T ss_dssp --------------------------------------HHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 1111 11259999999999998775333 6788999999999
Q ss_pred hcCChhhhhhhhhHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 330 NDGQMDETKHYETVFLLFKRLNSTG-LFP--DLYTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 330 ~~g~~~~a~~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
+.|++++|.. +|++..+.. +.| ....|..++..+.+.|+.+.|..+++++.+.
T Consensus 215 ~~g~~~~A~~------~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 215 HLNEDNNTRV------LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp TTCCHHHHHH------HHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHH------HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999 999999863 455 4678999999999999999999999999874
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=4.3e-12 Score=115.05 Aligned_cols=272 Identities=13% Similarity=-0.009 Sum_probs=197.3
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCcchHHHHHHHHHHc----CCC-
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD----RYTYNILINCFCKMGRVSHGFVVLGRILRS----CFT- 157 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~- 157 (414)
......+......+...|++++|...|++..+.+. .+ ..++..+...+...|++++|...+++.... +-.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 45666778888899999999999999999887632 13 357888899999999999999999987653 211
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------hH
Q 043191 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC-ELD----VFTYNTLINGLCRTGH--------------------TI 212 (414)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~ 212 (414)
....++..+...|...|++++|...+++.....- ..+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 1245688888999999999999999988765310 012 4478888899999999 78
Q ss_pred HHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHH
Q 043191 213 VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDG 292 (414)
Q Consensus 213 ~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~ 292 (414)
+|...+++...... -..+. ......+..+...
T Consensus 165 ~A~~~~~~al~~~~-----~~~~~-------------------------------------------~~~~~~~~~la~~ 196 (406)
T 3sf4_A 165 AAVDFYEENLSLVT-----ALGDR-------------------------------------------AAQGRAFGNLGNT 196 (406)
T ss_dssp HHHHHHHHHHHHHH-----HTTCH-------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----hccCc-------------------------------------------HHHHHHHHHHHHH
Confidence 88777777654210 00000 0112235557777
Q ss_pred HHhcCChhHHHHHHHhchhCCC-CCC----HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC----CCCCC-HHHH
Q 043191 293 LCKISKLKIARELFQSLPRAGL-MPN----VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST----GLFPD-LYTY 362 (414)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~----~~~p~-~~~~ 362 (414)
|...|++++|...+++..+... .++ ..++..+...|...|++++|.. .+++..+. +..+. ..++
T Consensus 197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~------~~~~al~~~~~~~~~~~~~~~~ 270 (406)
T 3sf4_A 197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE------YYKKTLLLARQLKDRAVEAQSC 270 (406)
T ss_dssp HHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH------HHHHHHHHHHhCcCchHHHHHH
Confidence 8888999999999988754311 112 2378888899999999999988 67666542 11111 5578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhC----CCCC-CHHHHHHHHHHHHHcCCcccc
Q 043191 363 NILINCFCKIGRVSSGFVIFGRILPS----CFTP-DAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 363 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a 413 (414)
..+...|...|++++|...+++..+. +-.+ ...++..+...|...|++++|
T Consensus 271 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88889999999999999999988764 1111 156888999999999999876
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=2.3e-11 Score=112.65 Aligned_cols=212 Identities=13% Similarity=-0.009 Sum_probs=169.2
Q ss_pred HHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHH
Q 043191 70 PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHY-DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148 (414)
Q Consensus 70 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 148 (414)
++++++.++......+ .+...|..+...+...|++ ++|++.|++..+.. +-+...|..+..+|...|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6777788887766554 6888999999999999999 99999999988763 225789999999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCh
Q 043191 149 GRILRSCFTPDAVTFTSLIKDLCAE---------SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT--------GHT 211 (414)
Q Consensus 149 ~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~ 211 (414)
++..+. .|+...+..+...|... |++++|++.|++..+.. +.+...|..+..+|... |++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999987 46778899999999999 99999999999998875 44688999999999988 999
Q ss_pred HHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHH
Q 043191 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291 (414)
Q Consensus 212 ~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~ 291 (414)
++|...|++..+. .|.. ..+...|..+..
T Consensus 238 ~~A~~~~~~al~~--------~p~~-------------------------------------------~~~~~~~~~lg~ 266 (474)
T 4abn_A 238 QQALSAYAQAEKV--------DRKA-------------------------------------------SSNPDLHLNRAT 266 (474)
T ss_dssp HHHHHHHHHHHHH--------CGGG-------------------------------------------GGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------CCCc-------------------------------------------ccCHHHHHHHHH
Confidence 9999999999873 3410 011222444556
Q ss_pred HHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhh
Q 043191 292 GLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339 (414)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 339 (414)
+|...|++++|.+.|++..+.... +...+..+...+...|++++|..
T Consensus 267 ~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 267 LHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 666678888888888888765433 55667777778888887777655
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=6.3e-11 Score=94.78 Aligned_cols=153 Identities=14% Similarity=0.048 Sum_probs=137.0
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
..|++++|++.|+...+..| .+..+|..+..++.+.|++++|+..+....... .-+...+..+...+...++++.+.
T Consensus 17 ~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~ 93 (184)
T 3vtx_A 17 TKGDFDGAIRAYKKVLKADP--NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAI 93 (184)
T ss_dssp HHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHH
Confidence 45899999999999999987 788999999999999999999999999987663 235677888888899999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+.+.+..+.. +-+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|.+.|++..+
T Consensus 94 ~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 94 DALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999998875 5578889999999999999999999999998875 45788999999999999999999999999987
No 64
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.38 E-value=4.1e-10 Score=112.04 Aligned_cols=279 Identities=9% Similarity=0.038 Sum_probs=211.7
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
..+++++|.++.+++ .+..+|..+..++.+.|++++|++.|.+. -|...|..++.++.+.|++++|.
T Consensus 1088 ~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHH
Confidence 345566666666644 45778999999999999999999999664 37788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
+.+....+.. ++....+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|....
T Consensus 1155 eyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~--- 1222 (1630)
T 1xi4_A 1155 KYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS--- 1222 (1630)
T ss_pred HHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---
Confidence 9999877764 44444456999999999998644442 2 4566777789999999999999999999852
Q ss_pred CCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHH
Q 043191 226 GEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIAREL 305 (414)
Q Consensus 226 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 305 (414)
.|..+..++++. |++++|.+.++.. .+..+|..+-.+|...|++..|...
T Consensus 1223 ------------ny~rLA~tLvkL---------------ge~q~AIEaarKA---~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1223 ------------NFGRLASTLVHL---------------GEYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred ------------HHHHHHHHHHHh---------------CCHHHHHHHHHHh---CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 577888888775 6688888777632 4568888889999999999988887
Q ss_pred HHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 043191 306 FQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI--GRVSSGFVIFG 383 (414)
Q Consensus 306 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~ 383 (414)
...+ ..+...+..++..|.+.|.+++|.. +++...... .-....|+-+...|++. ++..++.++|.
T Consensus 1273 gl~I-----iv~~deLeeli~yYe~~G~feEAI~------LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1273 GLHI-----VVHADELEELINYYQDRGYFEELIT------MLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHhh-----hcCHHHHHHHHHHHHHcCCHHHHHH------HHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6543 2367778899999999999998888 887776543 22345666666666654 44555556555
Q ss_pred hhhhCCCCC------CHHHHHHHHHHHHHcCCcccc
Q 043191 384 RILPSCFTP------DAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 384 ~m~~~g~~p------~~~~~~~li~~~~~~g~~~~a 413 (414)
.-.. +.| +...|..+.-.|.+.|+++.|
T Consensus 1341 ~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1341 SRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred Hhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 3332 222 567899999999999998876
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=5.2e-12 Score=111.13 Aligned_cols=268 Identities=13% Similarity=-0.019 Sum_probs=192.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCcchHHHHHHHHHHc----CCC-CCHH
Q 043191 91 TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD----RYTYNILINCFCKMGRVSHGFVVLGRILRS----CFT-PDAV 161 (414)
Q Consensus 91 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 161 (414)
..+......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+. +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 44566677888999999999999998876321 3 367888899999999999999999887653 211 2356
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHH
Q 043191 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGC-ELD----VFTYNTLINGLCRTGH--------------------TIVALN 216 (414)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~--------------------~~~a~~ 216 (414)
++..+...+...|++++|...+++.....- ..+ ..++..+...|...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788888999999999999999998765310 112 3478888888999999 777777
Q ss_pred HHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhc
Q 043191 217 LFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI 296 (414)
Q Consensus 217 ~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~ 296 (414)
.+++..... +..... ......+..+...+...
T Consensus 165 ~~~~a~~~~--------~~~~~~----------------------------------------~~~~~~~~~l~~~~~~~ 196 (338)
T 3ro2_A 165 LYEENLSLV--------TALGDR----------------------------------------AAQGRAFGNLGNTHYLL 196 (338)
T ss_dssp HHHHHHHHH--------HHHTCH----------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------HhcCCH----------------------------------------HHHHHHHHHHHHHHHHh
Confidence 777665421 000000 00112355567778888
Q ss_pred CChhHHHHHHHhchhCC----CC-CCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 043191 297 SKLKIARELFQSLPRAG----LM-PNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST----GLFP-DLYTYNILI 366 (414)
Q Consensus 297 ~~~~~a~~~~~~m~~~g----~~-p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li 366 (414)
|++++|...+++..+.. .. ....++..+...+...|++++|.. .+++..+. +..+ ...++..+.
T Consensus 197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~------~~~~al~~~~~~~~~~~~~~~~~~la 270 (338)
T 3ro2_A 197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE------YYKKTLLLARQLKDRAVEAQSCYSLG 270 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH------HHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 99999999999875431 10 112377888889999999999988 66665542 1111 155778888
Q ss_pred HHHHhcCCHHHHHHHHHhhhhC----CC-CCCHHHHHHHHHHHHHcCCcccc
Q 043191 367 NCFCKIGRVSSGFVIFGRILPS----CF-TPDAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 367 ~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a 413 (414)
..|...|++++|...+++..+. +- .....++..+...|.+.|++++|
T Consensus 271 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 271 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8999999999999999988753 11 11245788899999999999876
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1e-11 Score=108.13 Aligned_cols=157 Identities=17% Similarity=0.066 Sum_probs=127.5
Q ss_pred CCCCHHhHHHHHHHHHhc-------CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHhhHHHH
Q 043191 66 TSITPNEALCVFDYMLNM-------RPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT------GLFP-DRYTYNIL 131 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~l 131 (414)
..|++++|+.+|+.+... .. .....++..+...+...|++++|...+++.... +-.| ...++..+
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 117 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNL 117 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 458999999999998873 22 355678899999999999999999999997654 2223 45678889
Q ss_pred HHHHHhcCCcchHHHHHHHHHHc------CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHH
Q 043191 132 INCFCKMGRVSHGFVVLGRILRS------CF-TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF------GCEL-DVFT 197 (414)
Q Consensus 132 i~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~ 197 (414)
...+...|++++|.+.+++..+. +- +.....+..+...+...|++++|.++|++.... +..| ...+
T Consensus 118 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (311)
T 3nf1_A 118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 197 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999998775 22 223456888899999999999999999998764 2122 3457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 198 YNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 198 ~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+..+...|...|++++|...|+++.+
T Consensus 198 ~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 198 KNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999999999886
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=2.6e-11 Score=109.27 Aligned_cols=294 Identities=8% Similarity=-0.048 Sum_probs=169.0
Q ss_pred CCCCHHhHHHHHHHHHhcCCC---CCCHhhHHHHHHHH--HhcCChhHHH-----------HHHHHHHhCCCCCCHhh--
Q 043191 66 TSITPNEALCVFDYMLNMRPS---RPPVTSFNILFGCL--AKTKHYDTVL-----------SLFKRLNLTGLFPDRYT-- 127 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~li~~~--~~~~~~~~a~-----------~~~~~m~~~g~~p~~~~-- 127 (414)
+.+++++|..+++.+...-.. .++...|-.++..- .-.++++.+. ++++.+.... .+...
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~l 101 (383)
T 3ulq_A 24 RRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGLL 101 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhHH
Confidence 457999999999998764321 23344444444322 1223344444 6666665431 11111
Q ss_pred ----HHHHHHHHHhcCCcchHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C----C
Q 043191 128 ----YNILINCFCKMGRVSHGFVVLGRILRS----CFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVFG--C----E 192 (414)
Q Consensus 128 ----~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~----~ 192 (414)
+......+...|++++|.+.+++..+. +-.+ ...++..+...|...|++++|...+++..+.- . .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 222556678899999999999999774 1111 34678889999999999999999999876531 1 1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCch----hhHHHHHHHHHhhcCCCchhHHHHHhhccchh
Q 043191 193 LDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA----ITYSTIIDGLCKEAGSANFLGFSCMASFSALN 268 (414)
Q Consensus 193 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (414)
....+++.+..+|...|++++|...|++..+... -.++. .++..+...|.. .|+++
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~lg~~y~~---------------~g~~~ 241 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE-----AEKQPQLMGRTLYNIGLCKNS---------------QSQYE 241 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHH---------------TTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHHH---------------CCCHH
Confidence 1245788899999999999999999998876320 00111 233344444433 34555
Q ss_pred hHhhhhh-hhh------h-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCC---CC-CHhhHHHHHHHHHhcCChhh
Q 043191 269 KMAFYFP-LVR------V-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL---MP-NVVTYNILIRGLCNDGQMDE 336 (414)
Q Consensus 269 ~a~~~~~-~~~------~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p-~~~~~~~li~~~~~~g~~~~ 336 (414)
+|...+. ... . +....++..+...|.+.|++++|...+++..+... .| ....+..+-..+...|+.+.
T Consensus 242 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (383)
T 3ulq_A 242 DAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA 321 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 5555554 222 1 12234455566666666666666666666665421 01 11223444445555555522
Q ss_pred hhhhhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 337 TKHYETVFLLFKRLNSTGLFPD-LYTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 337 a~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
+++|+.++++. +..|+ ...+..+...|...|++++|...+++..+
T Consensus 322 ---~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 322 ---IQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp ---HHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344444433 22222 23455555666666666666666665543
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=2.8e-11 Score=112.07 Aligned_cols=215 Identities=8% Similarity=-0.044 Sum_probs=173.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCc-chHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 043191 105 HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRV-SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183 (414)
Q Consensus 105 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 183 (414)
.+++++..++...... ..+...+..+..++...|++ ++|++.|++..+.. +-+...|..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567777777766542 23778888999999999999 99999999998875 446889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHcCCCCCCccccCc-hhhHHHHHHHHHhhcCCC
Q 043191 184 TKLRVFGCELDVFTYNTLINGLCRT---------GHTIVALNLFEEMANGNGEFGVVCEPD-AITYSTIIDGLCKEAGSA 253 (414)
Q Consensus 184 ~~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~ 253 (414)
++..+. .|+...+..+..+|... |++++|.+.|++..+. .|+ ...|..
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~------------ 218 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYI------------ 218 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHH------------
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHH------------
Confidence 999876 57788899999999999 9999999999999873 343 333333
Q ss_pred chhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhc--------CChhHHHHHHHhchhCCCC--CCHhhHHH
Q 043191 254 NFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI--------SKLKIARELFQSLPRAGLM--PNVVTYNI 323 (414)
Q Consensus 254 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~--p~~~~~~~ 323 (414)
+..+|... |++++|+..|++..+.... -+...|..
T Consensus 219 -----------------------------------lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 263 (474)
T 4abn_A 219 -----------------------------------LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263 (474)
T ss_dssp -----------------------------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHH
Confidence 33344444 7799999999998875331 27888999
Q ss_pred HHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 043191 324 LIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRI 385 (414)
Q Consensus 324 li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 385 (414)
+..+|...|++++|.. .|++..+..- -+...+..+...+...|++++|++.+.++
T Consensus 264 lg~~~~~~g~~~~A~~------~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 264 RATLHKYEESYGEALE------GFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHTTCHHHHHH------HHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHH------HHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999988 9999887532 25678888999999999999999876554
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=2e-10 Score=91.88 Aligned_cols=166 Identities=12% Similarity=0.036 Sum_probs=84.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhh
Q 043191 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAIT 238 (414)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~ 238 (414)
++.+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|...+....... |+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~ 74 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--------TTSAE 74 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------chhHH
Confidence 34455555555555555555555555555443 2344555555555555555555555555555422 22111
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCH
Q 043191 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV 318 (414)
Q Consensus 239 ~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 318 (414)
. +..+...+...++++.|...+.+....... +.
T Consensus 75 ~----------------------------------------------~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~ 107 (184)
T 3vtx_A 75 A----------------------------------------------YYILGSANFMIDEKQAAIDALQRAIALNTV-YA 107 (184)
T ss_dssp H----------------------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred H----------------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-ch
Confidence 0 111222233335555555555555443222 34
Q ss_pred hhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 319 ~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
..+..+...+...|++++|.. .|++..+.. +-+...|..+...|.+.|++++|++.|++.++
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~------~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIE------AYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH------HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHH------HHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555555566666555555 555555432 12445555566666666666666666666655
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=1e-09 Score=98.30 Aligned_cols=291 Identities=13% Similarity=0.066 Sum_probs=193.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHh----hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVT----SFNILFGCLAKTKHYDTVLSLFKRLNLTGL-FPD----RYTYNILINCFC 136 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~ 136 (414)
..|++++|...++......+ ..+.. +++.+...+...|++++|.+.+++...... ..+ ..++..+...+.
T Consensus 26 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 45899999999999887655 33332 567777888899999999999988654210 112 233566777888
Q ss_pred hcCCcchHHHHHHHHHHc----CCC--C-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHH
Q 043191 137 KMGRVSHGFVVLGRILRS----CFT--P-DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE----LDVFTYNTLINGL 205 (414)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~ 205 (414)
..|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.....-. ....++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 999999999999888663 222 2 2345667788889999999999999988764211 1245777888889
Q ss_pred HhcCChHHHHHHHHHHHcCCCCCCccccCch-hhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccc
Q 043191 206 CRTGHTIVALNLFEEMANGNGEFGVVCEPDA-ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCL 284 (414)
Q Consensus 206 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 284 (414)
...|++++|...+++...... .++. ..+...+
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~------~~~~~~~~~~~~----------------------------------------- 217 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLG------NGKYHSDWISNA----------------------------------------- 217 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHT------TSCCCHHHHHHH-----------------------------------------
T ss_pred HHcCCHHHHHHHHHHHHHHHh------ccCcchhHHHHH-----------------------------------------
Confidence 999999999999998875320 1111 1111100
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHhchhCCCCCC---HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh----CCCCC
Q 043191 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPN---VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS----TGLFP 357 (414)
Q Consensus 285 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~----~~~~p 357 (414)
....+..+...|++++|...+++.......+. ...+..+...+...|++++|.. .++.... .|..+
T Consensus 218 -~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~------~l~~a~~~~~~~~~~~ 290 (373)
T 1hz4_A 218 -NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEI------VLEELNENARSLRLMS 290 (373)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHHHHTTCHH
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHH------HHHHHHHHHHhCcchh
Confidence 01133445677999999999988765432211 2245667788888999888877 6666543 23222
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHhhhhC----CCC----CCHHHHHHHHHHHHHcCCcc
Q 043191 358 DL-YTYNILINCFCKIGRVSSGFVIFGRILPS----CFT----PDAVTFTSLIKILEINSFFR 411 (414)
Q Consensus 358 ~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~----p~~~~~~~li~~~~~~g~~~ 411 (414)
+. ..+..+..++...|+.++|...+++.... |.. ........++..+.....++
T Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g~~~~~ll~~~~~~~~~~ 353 (373)
T 1hz4_A 291 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLP 353 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSC
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHccHHHHHHHHHHHhCCCCc
Confidence 33 25666677888899999999988887643 221 11233455666666666553
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=7.9e-11 Score=93.96 Aligned_cols=153 Identities=13% Similarity=-0.002 Sum_probs=136.0
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
..|++++|++.|+.+....+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 20 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 96 (186)
T 3as5_A 20 KAGRYSQAVMLLEQVYDADA--FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAV 96 (186)
T ss_dssp HHTCHHHHHHHHTTTCCTTS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 45899999999999988765 678889999999999999999999999988663 336788888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+.++++.+.. +.+...+..+...+...|++++|.+++++..... +.+..++..+...+...|++++|...+++..+
T Consensus 97 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 97 PLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998875 5578889999999999999999999999998875 45678999999999999999999999999876
No 72
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=1.3e-10 Score=99.60 Aligned_cols=236 Identities=14% Similarity=0.041 Sum_probs=152.7
Q ss_pred CCCHHhHHHHHHHHHh-------cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHhhHHHHH
Q 043191 67 SITPNEALCVFDYMLN-------MRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT------GLFP-DRYTYNILI 132 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li 132 (414)
.|++++|+..|+.... ... .....++..+...+...|++++|+..|++..+. +-.| ...++..+.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3455555555555443 232 245678899999999999999999999997654 2223 456788999
Q ss_pred HHHHhcCCcchHHHHHHHHHHc------C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHH
Q 043191 133 NCFCKMGRVSHGFVVLGRILRS------C-FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF------GCEL-DVFTY 198 (414)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~ 198 (414)
.++...|++++|.+.+++..+. . .+....++..+...|...|++++|..+|++.... +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998765 1 1234567888999999999999999999998765 1122 35688
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHcCCCCC-CccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-h
Q 043191 199 NTLINGLCRTGHTIVALNLFEEMANGNGEF-GVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-L 276 (414)
Q Consensus 199 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~ 276 (414)
..+...|...|++++|...|++..+..... .....+....+...+..+...+.... ....+..+...+. .
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR--------DSAPYGEYGSWYKAC 244 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC--------C------------CC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh--------HHHHHHHHHHHHHhc
Confidence 899999999999999999999987631000 00012333333222222222211110 1122233333333 2
Q ss_pred hhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchh
Q 043191 277 VRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311 (414)
Q Consensus 277 ~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 311 (414)
... ......+..+...|...|++++|..+|++..+
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 23345677788888888999999988887654
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=8.3e-10 Score=87.91 Aligned_cols=132 Identities=17% Similarity=0.051 Sum_probs=115.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 169 (414)
...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567788889999999999999999987653 2367888899999999999999999999998874 5578889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 170 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
+...|++++|.+.++++.... +.+...+..+...+...|++++|...+++..+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 999999999999999998764 457888999999999999999999999998874
No 74
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=2e-10 Score=98.38 Aligned_cols=241 Identities=12% Similarity=-0.015 Sum_probs=156.5
Q ss_pred HhcCChhHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHc------CC-CCCHHhHHHH
Q 043191 101 AKTKHYDTVLSLFKRLNLT-------GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS------CF-TPDAVTFTSL 166 (414)
Q Consensus 101 ~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 166 (414)
...|++++|+.+|++..+. .......++..+...+...|++++|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777765432 11224667888999999999999999999998765 22 2245678899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhH
Q 043191 167 IKDLCAESRIMEAAALFTKLRVF------G-CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239 (414)
Q Consensus 167 i~~~~~~g~~~~a~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~ 239 (414)
...|...|++++|.+.|++.... . .+....++..+...|...|++++|...|++..+..... ..++..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~-- 166 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR---LGPDDP-- 166 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH---SCTTCH--
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---cCCCCH--
Confidence 99999999999999999988764 1 12346788899999999999999999999988631000 001100
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhC-------
Q 043191 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRA------- 312 (414)
Q Consensus 240 ~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------- 312 (414)
.....+..+...|...|++++|..++++..+.
T Consensus 167 -----------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 167 -----------------------------------------NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 01122455677778889999999999987653
Q ss_pred CCCCC-HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 313 GLMPN-VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 313 g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
...+. ...|..+...+...+....+..+..+...++..... ......++..+...|...|++++|..++++.++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12222 233444444444444444444422222233222211 1123457888999999999999999999988763
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.21 E-value=2.5e-09 Score=95.87 Aligned_cols=266 Identities=9% Similarity=-0.065 Sum_probs=181.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCcchHHHHHHHHHHcCC-CCC----HHhH
Q 043191 93 FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR----YTYNILINCFCKMGRVSHGFVVLGRILRSCF-TPD----AVTF 163 (414)
Q Consensus 93 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~ 163 (414)
.......+...|++++|...+++.....-..+. .+++.+...+...|++++|.+.+++.....- ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 344555677899999999999997765322222 2456677788889999999999998876311 112 2335
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCch
Q 043191 164 TSLIKDLCAESRIMEAAALFTKLRVF----GCE--L-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236 (414)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~ 236 (414)
..+...+...|++++|...+++.... +.. | ...++..+...+...|++++|...+++....... ..+..
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~ 172 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS----YQPQQ 172 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT----SCGGG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc----cCcHH
Confidence 67778899999999999999887653 222 2 2456677888999999999999999998764310 00000
Q ss_pred hhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCC
Q 043191 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316 (414)
Q Consensus 237 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 316 (414)
. ...+..+...+...|++++|...+++.......+
T Consensus 173 -~--------------------------------------------~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 207 (373)
T 1hz4_A 173 -Q--------------------------------------------LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 207 (373)
T ss_dssp -G--------------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred -H--------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 0 0123445667777899999999999876432111
Q ss_pred CH-hhHH-----HHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 317 NV-VTYN-----ILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP---DLYTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 317 ~~-~~~~-----~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
+. ..+. ..+..+...|++++|.. .+++.......+ ....+..+...+...|++++|...+++..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~------~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 208 KYHSDWISNANKVRVIYWQMTGDKAAAAN------WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHH------HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHCCCHHHHHH------HHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 1222 23344778999999988 888877643221 133566778889999999999999998765
Q ss_pred C----CCCCCH-HHHHHHHHHHHHcCCcccc
Q 043191 388 S----CFTPDA-VTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 388 ~----g~~p~~-~~~~~li~~~~~~g~~~~a 413 (414)
. |..++. ..+..+..++...|++++|
T Consensus 282 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 282 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 3 222233 3677778888899988776
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=3.4e-09 Score=91.49 Aligned_cols=238 Identities=8% Similarity=-0.018 Sum_probs=159.8
Q ss_pred hHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHH
Q 043191 72 EALCVFDYMLNMRPSRPPVTSFNILFGCLAKT---KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVL 148 (414)
Q Consensus 72 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 148 (414)
+|.+++.+..+.-. ++...| .+ .+. +++++|...|++. ...|...|++++|.+.|
T Consensus 3 ~a~~~~~~a~k~~~--~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 3 DPVELLKRAEKKGV--PSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CHHHHHHHHHHHSS--CCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred cHHHHHHHHHHHhC--cCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 46666666665532 222223 22 132 2478888887766 34577788999999888
Q ss_pred HHHHHc----CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhc-CChHHHHHH
Q 043191 149 GRILRS----CFTPD-AVTFTSLIKDLCAESRIMEAAALFTKLRVFGC---EL--DVFTYNTLINGLCRT-GHTIVALNL 217 (414)
Q Consensus 149 ~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~~--~~~~~~~li~~~~~~-g~~~~a~~~ 217 (414)
.+..+. |-+++ ..+|+.+..+|.+.|++++|+..|++...... .+ -..+++.+..+|... |++++|+..
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~ 140 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 877654 21112 46788888999999999999999888765310 11 145788889999996 999999999
Q ss_pred HHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcC
Q 043191 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297 (414)
Q Consensus 218 ~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~ 297 (414)
|++..+ +.|+....... ..+++.+...|.+.|
T Consensus 141 ~~~Al~--------~~~~~~~~~~~----------------------------------------~~~~~~lg~~~~~~g 172 (292)
T 1qqe_A 141 YELAGE--------WYAQDQSVALS----------------------------------------NKCFIKCADLKALDG 172 (292)
T ss_dssp HHHHHH--------HHHHTTCHHHH----------------------------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHH--------HHHhCCChHHH----------------------------------------HHHHHHHHHHHHHhC
Confidence 999876 22321110000 112455777888889
Q ss_pred ChhHHHHHHHhchhCCCCCCH------hhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCH------HHHHHH
Q 043191 298 KLKIARELFQSLPRAGLMPNV------VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL------YTYNIL 365 (414)
Q Consensus 298 ~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~------~~~~~l 365 (414)
++++|+..|++..+....... ..|..+..++...|++++|.. .+++..+. .|+. ..+..+
T Consensus 173 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~------~~~~al~l--~p~~~~~~~~~~l~~l 244 (292)
T 1qqe_A 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR------TLQEGQSE--DPNFADSRESNFLKSL 244 (292)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH------HHHGGGCC-----------HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH------HHHHHHhh--CCCCCCcHHHHHHHHH
Confidence 999999999998875433222 156777888999999999988 88888764 3332 234555
Q ss_pred HHHHH--hcCCHHHHHHHHHhhhh
Q 043191 366 INCFC--KIGRVSSGFVIFGRILP 387 (414)
Q Consensus 366 i~~~~--~~g~~~~a~~~~~~m~~ 387 (414)
+.+|. ..+++++|+..|+++.+
T Consensus 245 ~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 245 IDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHcCCHHHHHHHHHHhccCCc
Confidence 66664 46779999999988866
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.20 E-value=1e-09 Score=105.90 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=66.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 168 (414)
..+|+.|...+.+.|++++|++.|++..+. .| +..+|..+..+|.+.|++++|++.|++.++.. +-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 445555555555555555555555555443 22 34455555555555555555555555555443 223445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+|.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555554432 22344555555555555555555555555444
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.20 E-value=7.8e-10 Score=106.77 Aligned_cols=152 Identities=15% Similarity=0.051 Sum_probs=136.8
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a 144 (414)
+.|++++|++.|++..+..| .+..+|+.+..++.+.|++++|++.|++..+. .| +...|..+..++.+.|++++|
T Consensus 21 ~~G~~~eAi~~~~kAl~l~P--~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~~~~A 96 (723)
T 4gyw_A 21 EQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQDVQGA 96 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45899999999999999886 77889999999999999999999999998876 34 578999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
++.|++.++.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|.+.+++..+
T Consensus 97 ~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 97 LQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 99999999875 4478899999999999999999999999998874 34678999999999999999999998887764
No 79
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.19 E-value=1.2e-09 Score=98.23 Aligned_cols=234 Identities=9% Similarity=-0.038 Sum_probs=167.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcC--C----CCCHHhHH
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLT----GLFP-DRYTYNILINCFCKMGRVSHGFVVLGRILRSC--F----TPDAVTFT 164 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 164 (414)
....+...|++++|+..|++..+. +-.+ ...++..+..+|...|+++.|...+.+..+.- . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999998753 2112 34678889999999999999999999887641 1 11245788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccc-cCchhh
Q 043191 165 SLIKDLCAESRIMEAAALFTKLRVF----GCEL-DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVC-EPDAIT 238 (414)
Q Consensus 165 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~p~~~~ 238 (414)
.+...|...|++++|.+.|++..+. +-.+ ...++..+...|...|++++|...|++..+...... . .....+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~ 266 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN--ILPSLPQA 266 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CGGGHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc--cchhHHHH
Confidence 8889999999999999999987653 1111 124788899999999999999999999876210000 1 223445
Q ss_pred HHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh------ccccccHHHHHHHHHhcCChhHHHHHHHhchh
Q 043191 239 YSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV------QCLCLNFLCLIDGLCKISKLKIARELFQSLPR 311 (414)
Q Consensus 239 ~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 311 (414)
+..+...+... |+.++|...+. .... ......+..+...|...|+.+...+.+....+
T Consensus 267 ~~~l~~~~~~~---------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 267 YFLITQIHYKL---------------GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp HHHHHHHHHHT---------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 66666666554 66777777776 3332 11122356678888889998667777777777
Q ss_pred CCCCCC-HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh
Q 043191 312 AGLMPN-VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352 (414)
Q Consensus 312 ~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~ 352 (414)
.+..|+ ...+..+...|...|++++|.. .+++..+
T Consensus 332 ~~~~~~~~~~~~~la~~y~~~g~~~~A~~------~~~~al~ 367 (383)
T 3ulq_A 332 KMLYADLEDFAIDVAKYYHERKNFQKASA------YFLKVEQ 367 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHH------HHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHCCCHHHHHH------HHHHHHH
Confidence 655444 3466778889999999999988 7777664
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=6.5e-09 Score=86.11 Aligned_cols=196 Identities=8% Similarity=-0.073 Sum_probs=146.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (414)
.|+..+......+...|++++|++.|++..+....++...+..+..++...|++++|++.+++..+.. +-+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 56688899999999999999999999998876533677788779999999999999999999999875 44677899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCc---hh
Q 043191 168 KDLCAESRIMEAAALFTKLRVFGCELDV-------FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD---AI 237 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~---~~ 237 (414)
..|...|++++|.+.|++..+.. +.+. ..|..+...+...|++++|...|++..+ ..|+ ..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~ 154 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--------VTSKKWKTD 154 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--------SSCHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--------cCCCcccHH
Confidence 99999999999999999998864 3344 4588888899999999999999999998 4455 45
Q ss_pred hHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCC
Q 043191 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAG 313 (414)
Q Consensus 238 ~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 313 (414)
.+..+...+...|. ...+++..+.. .+...|.... ....+.+++|...|++..+..
T Consensus 155 ~~~~l~~~~~~~~~-------------~~~~~a~~~~~-----~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 155 ALYSLGVLFYNNGA-------------DVLRKATPLAS-----SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHHH-------------HHHHHHGGGTT-----TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-------------HHHHHHHhccc-----CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 56666666655421 00122222211 0111122222 233466889999999887753
No 81
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=2.2e-09 Score=80.43 Aligned_cols=130 Identities=14% Similarity=0.136 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043191 91 TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170 (414)
Q Consensus 91 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 170 (414)
.+|..+...+...|++++|..+|+++.+.+ +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 357788889999999999999999987653 2367788888899999999999999999998875 45677888899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 171 CAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 171 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
...|++++|.++++++.... +.+..++..+...+.+.|++++|...|+++..
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 99999999999999998764 44678888999999999999999999999876
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=3.2e-09 Score=87.94 Aligned_cols=153 Identities=10% Similarity=0.032 Sum_probs=130.2
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcch
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSH 143 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~ 143 (414)
...|++++|++.|+......+ .++...+..+..++...|++++|++.|++..+. .| +...|..+..++...|++++
T Consensus 18 ~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~ 94 (228)
T 4i17_A 18 LNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQE 94 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHHH
T ss_pred HHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHHH
Confidence 355899999999999999876 577788888999999999999999999999876 34 56788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCh--
Q 043191 144 GFVVLGRILRSCFTPDA-------VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD---VFTYNTLINGLCRTGHT-- 211 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~-- 211 (414)
|.+.+++..+.. +.+. ..|..+...+...|++++|++.|++..+. .|+ ...|..+..+|...|+.
T Consensus 95 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~~~ 171 (228)
T 4i17_A 95 YIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGADVL 171 (228)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999874 3345 45778888899999999999999999876 454 56788888888887777
Q ss_pred -------------------------HHHHHHHHHHHc
Q 043191 212 -------------------------IVALNLFEEMAN 223 (414)
Q Consensus 212 -------------------------~~a~~~~~~m~~ 223 (414)
++|...|++..+
T Consensus 172 ~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 172 RKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888999988887
No 83
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.14 E-value=8.1e-09 Score=94.94 Aligned_cols=280 Identities=8% Similarity=-0.032 Sum_probs=148.4
Q ss_pred CCCCH---HhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 043191 66 TSITP---NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-----HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK 137 (414)
Q Consensus 66 ~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 137 (414)
..|++ ++|++.|+..... ++.++..|...+...+ ++++|..+|++..+.|.. ..+..|...|..
T Consensus 47 ~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~ 118 (452)
T 3e4b_A 47 GTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQ 118 (452)
T ss_dssp -----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHh
Confidence 44556 7888888777642 4556666666555544 677888888887776532 255666666666
Q ss_pred cCCcc---hHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---Ch
Q 043191 138 MGRVS---HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG---HT 211 (414)
Q Consensus 138 ~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~ 211 (414)
.+..+ .+.+.+......| +...+..|...|...+.++++......+...-...+...+..|...|...| +.
T Consensus 119 ~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~ 195 (452)
T 3e4b_A 119 YPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQ 195 (452)
T ss_dssp CGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccH
Confidence 55433 3444444444444 344555666666666644443333222222111222337777778888888 88
Q ss_pred HHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHH
Q 043191 212 IVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLID 291 (414)
Q Consensus 212 ~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~ 291 (414)
++|++.|+...+.| .++...+..+...|.... ...++.++|...++... +.+...+..+..
T Consensus 196 ~~A~~~~~~aa~~g-------~~~a~~~~~Lg~~y~~g~-----------~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~ 256 (452)
T 3e4b_A 196 AELLKQMEAGVSRG-------TVTAQRVDSVARVLGDAT-----------LGTPDEKTAQALLEKIA-PGYPASWVSLAQ 256 (452)
T ss_dssp HHHHHHHHHHHHTT-------CSCHHHHHHHHHHHTCGG-----------GSSCCHHHHHHHHHHHG-GGSTHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-------CHHHHHHHHHHHHHhCCC-----------CCCCCHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 88888888888766 344443344444443210 11246667777777222 455555666655
Q ss_pred H-H--HhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcC-----ChhhhhhhhhHHHHHHHHHhCCCCCCHHHHH
Q 043191 292 G-L--CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG-----QMDETKHYETVFLLFKRLNSTGLFPDLYTYN 363 (414)
Q Consensus 292 ~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~ 363 (414)
. | ...+++++|...|++..+.| +...+..+-..|. .| ++++|.. .|++.. . -+...+.
T Consensus 257 ~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~------~~~~Aa-~---g~~~A~~ 322 (452)
T 3e4b_A 257 LLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA------HFEKAV-G---REVAADY 322 (452)
T ss_dssp HHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH------HHHTTT-T---TCHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH------HHHHHh-C---CCHHHHH
Confidence 5 3 35677777777777776655 4555555555555 34 5555555 666655 2 2455555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhhhhCC
Q 043191 364 ILINCFCK----IGRVSSGFVIFGRILPSC 389 (414)
Q Consensus 364 ~li~~~~~----~g~~~~a~~~~~~m~~~g 389 (414)
.|...|.. ..+.++|...|++..+.|
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 55555554 336777777777776655
No 84
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.13 E-value=2.3e-08 Score=91.93 Aligned_cols=279 Identities=11% Similarity=0.003 Sum_probs=195.9
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYD---TVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
+++++|+..|+.....+. + .++..|...|...+..+ ++.+.+......| +...+..+...|...+.++.+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~--~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE--G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC--S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred cCHHHHHHHHHHHHHCCC--H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 478999999999988665 3 37777888887766544 4555555555444 345667778888888877766
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChHHHHHH
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAES---RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT----GHTIVALNL 217 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~a~~~ 217 (414)
......+.+.-...+...+..|...|.+.| +.++|++.|++..+.| .++...+..|...|... +++++|...
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 666554444322334448888888999999 9999999999999888 56777667777777655 789999999
Q ss_pred HHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcC
Q 043191 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297 (414)
Q Consensus 218 ~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~ 297 (414)
|+... .| +...+..+-..|... ...++.++|...++..-...+...+..|...|. .|
T Consensus 240 ~~~aa-~g---------~~~a~~~Lg~~~~~~------------~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 240 LEKIA-PG---------YPASWVSLAQLLYDF------------PELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EG 296 (452)
T ss_dssp HHHHG-GG---------STHHHHHHHHHHHHS------------GGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HC
T ss_pred HHHHc-CC---------CHHHHHHHHHHHHhC------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cC
Confidence 99987 44 233344444442211 124788899988883334446667777777777 55
Q ss_pred -----ChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHh----cCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043191 298 -----KLKIARELFQSLPRAGLMPNVVTYNILIRGLCN----DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINC 368 (414)
Q Consensus 298 -----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 368 (414)
++++|...|++.. .| +...+..+-..|.. ..++++|.. .|++..+.|. ......|...
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~------~~~~Aa~~g~---~~A~~~Lg~~ 363 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALD------HLLTAARNGQ---NSADFAIAQL 363 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHH------HHHHHHTTTC---TTHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHH------HHHHHHhhCh---HHHHHHHHHH
Confidence 9999999999887 43 56667777666665 236666666 9999988764 3445555555
Q ss_pred HHh----cCCHHHHHHHHHhhhhCCC
Q 043191 369 FCK----IGRVSSGFVIFGRILPSCF 390 (414)
Q Consensus 369 ~~~----~g~~~~a~~~~~~m~~~g~ 390 (414)
|.. ..+.++|...|+...+.|.
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 553 4689999999999988774
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.11 E-value=6.4e-09 Score=93.37 Aligned_cols=300 Identities=11% Similarity=0.003 Sum_probs=192.7
Q ss_pred CCHhhHHHHHHHH--HhcCChhHHHHHHHHHHhC--CCCCC--HhhHHHHHHH--HHhcCCcchHH---------HHHHH
Q 043191 88 PPVTSFNILFGCL--AKTKHYDTVLSLFKRLNLT--GLFPD--RYTYNILINC--FCKMGRVSHGF---------VVLGR 150 (414)
Q Consensus 88 ~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~li~~--~~~~~~~~~a~---------~~~~~ 150 (414)
|+...-+.|-..| .+.+++++|..+++++... .+..| ...|-.++.. ..-.+....+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4455555566666 7889999999999987542 22223 3334444432 11223333344 66666
Q ss_pred HHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043191 151 ILRSCFTPDA----VTFTSLIKDLCAESRIMEAAALFTKLRVFGC-ELD----VFTYNTLINGLCRTGHTIVALNLFEEM 221 (414)
Q Consensus 151 ~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m 221 (414)
+.....+.+. ..+......+...|++++|...|++.....- .++ ..++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6443211111 1223334456789999999999999876311 122 457888999999999999999999988
Q ss_pred HcCCCCCCccccC-chhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-------ccccccHHHHHHH
Q 043191 222 ANGNGEFGVVCEP-DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-------QCLCLNFLCLIDG 292 (414)
Q Consensus 222 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-------~~~~~~~~~li~~ 292 (414)
.+.....+. ..+ ...++..+...|.. .|++++|...+. .... .....+++.+..+
T Consensus 168 l~~~~~~~~-~~~~~~~~~~~lg~~y~~---------------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 231 (378)
T 3q15_A 168 LDIYQNHPL-YSIRTIQSLFVIAGNYDD---------------FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANS 231 (378)
T ss_dssp HHHHHTSTT-CHHHHHHHHHHHHHHHHH---------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-chhhHHHHHHHHHHHHHH---------------hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 763210000 011 12344455555544 467777777776 3332 1224567788899
Q ss_pred HHhcCChhHHHHHHHhchh-----CCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCC----CCCCHHHHH
Q 043191 293 LCKISKLKIARELFQSLPR-----AGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTG----LFPDLYTYN 363 (414)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~----~~p~~~~~~ 363 (414)
|...|++++|...|++..+ .... ...++..+...+.+.|++++|.. .+++..+.. -......+.
T Consensus 232 y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~------~~~~al~~~~~~~~~~~~~~~~ 304 (378)
T 3q15_A 232 YDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQ------FIEEGLDHITARSHKFYKELFL 304 (378)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHCCTTCCSCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999998876 3222 36778888999999999999988 888877631 222234556
Q ss_pred HHHHHHHhcCC---HHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHHcCCcccc
Q 043191 364 ILINCFCKIGR---VSSGFVIFGRILPSCFTP-DAVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 364 ~li~~~~~~g~---~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a 413 (414)
.+...|...|+ +++|+..+++.. ..| ....+..+...|...|++++|
T Consensus 305 ~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A 355 (378)
T 3q15_A 305 FLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSAAAVFESSCHFEQA 355 (378)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHCCCHHHH
Confidence 66666777888 778888777632 233 345677899999999999876
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=1.2e-08 Score=91.59 Aligned_cols=161 Identities=12% Similarity=-0.009 Sum_probs=124.0
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CC-CHhhHHHHHHH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRP----PVTSFNILFGCLAKTKHYDTVLSLFKRLNLT----GL-FP-DRYTYNILINC 134 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p-~~~~~~~li~~ 134 (414)
...|++++|+..|+.........+ ...++..+...+...|+++.|...+++..+. +. .+ ...+++.+..+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 356899999999999876432112 3457888999999999999999999886532 11 11 24577888999
Q ss_pred HHhcCCcchHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHH
Q 043191 135 FCKMGRVSHGFVVLGRILRS----CFT-PDAVTFTSLIKDLCAESRIMEAAALFTKLRVF----GCELDVFTYNTLINGL 205 (414)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~ 205 (414)
|...|++++|.+.|++..+. +-. ....+++.+...|...|++++|...|++.... +.+....++..+..+|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 99999999999999888763 111 12356788888999999999999999988761 2233367888899999
Q ss_pred HhcCChHHHHHHHHHHHcCC
Q 043191 206 CRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 206 ~~~g~~~~a~~~~~~m~~~~ 225 (414)
.+.|++++|...+++..+..
T Consensus 272 ~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988743
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=6.1e-08 Score=82.51 Aligned_cols=241 Identities=11% Similarity=0.003 Sum_probs=165.9
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 146 (414)
.|.+..++.-.. +..+ ......--.+.+++...|++... ..-.|....+..+.. |...+ ++.
T Consensus 26 ~G~yq~~i~e~~---~~~~-~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~~ 87 (310)
T 3mv2_B 26 TGNFVQCLQEIE---KFSK-VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NIE 87 (310)
T ss_dssp TTCHHHHTHHHH---TSSC-CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CCH
T ss_pred hhHHHHHHHHHH---hcCc-cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HHH
Confidence 477777777333 3233 22233444566888888887642 112344434443333 33322 678
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC-ELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
.|++..+.+ .++..++..+..++...|++++|++++.+....|- .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-- 164 (310)
T 3mv2_B 88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-- 164 (310)
T ss_dssp HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 888877665 56666777888999999999999999999876652 13677888999999999999999999999987
Q ss_pred CCCCccccC-----chhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhccccccHHHHHHHHHhcCCh
Q 043191 226 GEFGVVCEP-----DAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQCLCLNFLCLIDGLCKISKL 299 (414)
Q Consensus 226 ~~~~~~~~p-----~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~li~~~~~~~~~ 299 (414)
..| +..+...+..++.... ...++..+|..+|+ +....|+..+-..++.++.+.|++
T Consensus 165 ------~~~d~~~~~d~~l~~Laea~v~l~-----------~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~ 227 (310)
T 3mv2_B 165 ------AIEDTVSGDNEMILNLAESYIKFA-----------TNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNI 227 (310)
T ss_dssp ------HSCHHHHHHHHHHHHHHHHHHHHH-----------HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCH
T ss_pred ------cCccccccchHHHHHHHHHHHHHH-----------hCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCH
Confidence 567 3667777777754420 01247889999998 766666533344455589999999
Q ss_pred hHHHHHHHhchhCC-----C----CCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC
Q 043191 300 KIARELFQSLPRAG-----L----MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353 (414)
Q Consensus 300 ~~a~~~~~~m~~~g-----~----~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~ 353 (414)
++|.+.++.+.+.- . .-|..++..+|......|+ +|.+ ++.++.+.
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~------l~~qL~~~ 282 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTED------LTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHH------HHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHH------HHHHHHHh
Confidence 99999999765431 0 2266777566666666776 7777 99999986
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=5.8e-09 Score=85.12 Aligned_cols=163 Identities=12% Similarity=0.019 Sum_probs=126.2
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHH----------------HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNI----------------LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTY 128 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 128 (414)
+..|++++|+..|+......| .+...|.. +..++.+.|++++|+..|++..+.. +-+...+
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 91 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALNI--DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCL 91 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCH--HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCC--CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 356899999999999998876 56667777 9999999999999999999988763 2367889
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043191 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR--IMEAAALFTKLRVFGCELDVFTYNTLINGLC 206 (414)
Q Consensus 129 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 206 (414)
..+..++...|++++|.+.|++.++.. +-+...+..+...|...|+ .+.+...+..... ..|....+..+..++.
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~ 168 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKL 168 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHH
Confidence 999999999999999999999999875 4577888888888766654 4455666666542 1333334455566777
Q ss_pred hcCChHHHHHHHHHHHcCCCCCCccccCchhhHHH
Q 043191 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241 (414)
Q Consensus 207 ~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~ 241 (414)
..|++++|...|++..+ ..|+......
T Consensus 169 ~~~~~~~A~~~~~~al~--------l~P~~~~~~~ 195 (208)
T 3urz_A 169 FTTRYEKARNSLQKVIL--------RFPSTEAQKT 195 (208)
T ss_dssp HHHTHHHHHHHHHHHTT--------TSCCHHHHHH
T ss_pred HccCHHHHHHHHHHHHH--------hCCCHHHHHH
Confidence 78999999999999998 5677654443
No 89
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=1.6e-08 Score=96.11 Aligned_cols=154 Identities=12% Similarity=-0.030 Sum_probs=120.4
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHH
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFV 146 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 146 (414)
.|++++|++.|+...+..+ .+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP--QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3688999999999988775 678899999999999999999999999998763 2367889999999999999999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHc
Q 043191 147 VLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT---GHTIVALNLFEEMAN 223 (414)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~ 223 (414)
.+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+..++... |++++|.+.+++..+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999999875 4567899999999999999999999999998874 44678899999999999 999999999999988
Q ss_pred CC
Q 043191 224 GN 225 (414)
Q Consensus 224 ~~ 225 (414)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 54
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=4.2e-08 Score=73.22 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043191 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGL 205 (414)
Q Consensus 126 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 205 (414)
..|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++...+ +.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 356778888999999999999999998775 4467888889999999999999999999988765 45677888899999
Q ss_pred HhcCChHHHHHHHHHHHcC
Q 043191 206 CRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 206 ~~~g~~~~a~~~~~~m~~~ 224 (414)
...|++++|.++++++...
T Consensus 80 ~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999999999998874
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=3.4e-08 Score=83.61 Aligned_cols=158 Identities=9% Similarity=-0.026 Sum_probs=124.5
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC-CHhhHHHHHHHHHh-----
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL-FP-DRYTYNILINCFCK----- 137 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~li~~~~~----- 137 (414)
+.|++++|+..|+.+....|..+. ..++..+..++.+.|++++|+..|++..+... .| ....+..+..++..
T Consensus 27 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~ 106 (261)
T 3qky_A 27 NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPY 106 (261)
T ss_dssp HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCT
T ss_pred HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccc
Confidence 458999999999999998762221 67888999999999999999999999887521 12 24567778888888
Q ss_pred ---cCCcchHHHHHHHHHHcCCCCCHHhH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCH
Q 043191 138 ---MGRVSHGFVVLGRILRSCFTPDAVTF-----------------TSLIKDLCAESRIMEAAALFTKLRVFGCE--LDV 195 (414)
Q Consensus 138 ---~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~ 195 (414)
.|++++|...|+++++.. +-+.... ..+...|.+.|++++|+..|+++.+..-. ...
T Consensus 107 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 185 (261)
T 3qky_A 107 ELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWAD 185 (261)
T ss_dssp TSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred cccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHH
Confidence 999999999999998874 2233333 45577899999999999999999876311 124
Q ss_pred HHHHHHHHHHHhc----------CChHHHHHHHHHHHcC
Q 043191 196 FTYNTLINGLCRT----------GHTIVALNLFEEMANG 224 (414)
Q Consensus 196 ~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 224 (414)
..+..+..+|... |++++|...|+++.+.
T Consensus 186 ~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 186 DALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5677788888866 8899999999999883
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=3.5e-08 Score=85.05 Aligned_cols=222 Identities=13% Similarity=0.018 Sum_probs=149.1
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc--C-CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 043191 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKM--G-RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALF 183 (414)
Q Consensus 107 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 183 (414)
.+|.+++.+..+. .++....| .++ +. + ++++|...|++. ...|...|++++|.+.|
T Consensus 2 ~~a~~~~~~a~k~-~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 60 (292)
T 1qqe_A 2 SDPVELLKRAEKK-GVPSSGFM-KLF----SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF 60 (292)
T ss_dssp CCHHHHHHHHHHH-SSCCCTHH-HHH----SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred CcHHHHHHHHHHH-hCcCCCcc-hhc----CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 3566777776654 12222222 222 32 2 488888888776 34677899999999999
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHH
Q 043191 184 TKLRVF----GCELD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGF 258 (414)
Q Consensus 184 ~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~ 258 (414)
.+.... |-.++ ..+|+.+..+|.+.|++++|+..|++..+ +.+....+....
T Consensus 61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--------l~~~~g~~~~~a--------------- 117 (292)
T 1qqe_A 61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--------IFTHRGQFRRGA--------------- 117 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHHTTCHHHHH---------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------HHHHcCCHHHHH---------------
Confidence 887653 32222 56889999999999999999999998876 222211111111
Q ss_pred HHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhc-CChhHHHHHHHhchhCCCCC-C----HhhHHHHHHHHHhcC
Q 043191 259 SCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKI-SKLKIARELFQSLPRAGLMP-N----VVTYNILIRGLCNDG 332 (414)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p-~----~~~~~~li~~~~~~g 332 (414)
.+++.+...|... |++++|+..|++..+..... + ..++..+...+...|
T Consensus 118 -------------------------~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 172 (292)
T 1qqe_A 118 -------------------------NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172 (292)
T ss_dssp -------------------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC
Confidence 1245577788885 99999999999876531110 1 356888899999999
Q ss_pred ChhhhhhhhhHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCH------HHHHHH
Q 043191 333 QMDETKHYETVFLLFKRLNSTGLFPDL------YTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDA------VTFTSL 400 (414)
Q Consensus 333 ~~~~a~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~l 400 (414)
++++|.. .+++..+....... ..|..+..++...|++++|...|++.++. .|+. ..+..+
T Consensus 173 ~~~~A~~------~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l 244 (292)
T 1qqe_A 173 QYIEASD------IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSL 244 (292)
T ss_dssp CHHHHHH------HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHH
T ss_pred CHHHHHH------HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHH
Confidence 9999988 99999886433221 25677788899999999999999999874 3432 234455
Q ss_pred HHHHH
Q 043191 401 IKILE 405 (414)
Q Consensus 401 i~~~~ 405 (414)
+.+|.
T Consensus 245 ~~~~~ 249 (292)
T 1qqe_A 245 IDAVN 249 (292)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.96 E-value=1.3e-08 Score=98.62 Aligned_cols=168 Identities=9% Similarity=-0.075 Sum_probs=140.7
Q ss_pred CCCCCHHhHHHHHHHHH--------hcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 043191 65 ITSITPNEALCVFDYML--------NMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 136 (414)
...|++++|++.|+... ...+ .+...+..+...+.+.|++++|++.|++..+.. +-+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS--ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 57799999999999998 5554 677889999999999999999999999988753 236778899999999
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043191 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216 (414)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 216 (414)
..|++++|.+.|++..+.. +-+...+..+..+|.+.|++++ ++.|++..+.. +.+...|..+..++.+.|++++|.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999875 4467889999999999999999 99999998875 4467889999999999999999999
Q ss_pred HHHHHHcCCCCCCccccCc-hhhHHHHHHHH
Q 043191 217 LFEEMANGNGEFGVVCEPD-AITYSTIIDGL 246 (414)
Q Consensus 217 ~~~~m~~~~~~~~~~~~p~-~~~~~~li~~~ 246 (414)
.|++..+ ..|+ ...+..+..++
T Consensus 556 ~~~~al~--------l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 556 TLDEVPP--------TSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHTSCT--------TSTTHHHHHHHHHHHT
T ss_pred HHHhhcc--------cCcccHHHHHHHHHHH
Confidence 9999887 4454 34454444444
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=5.3e-08 Score=82.43 Aligned_cols=199 Identities=9% Similarity=-0.034 Sum_probs=128.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccC
Q 043191 158 PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD---VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEP 234 (414)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p 234 (414)
.+...+-.+...+.+.|++++|...|+++.... +.+ ...+..+..+|.+.|++++|...|+...+. .|
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--------~p 83 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--------YQ 83 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--------CC
Confidence 345666667777888889999999998887763 223 567788888888999999999999998873 33
Q ss_pred ch----hhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhch
Q 043191 235 DA----ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLP 310 (414)
Q Consensus 235 ~~----~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 310 (414)
+. ..+..+..++...+... +...|++++|...|+++.
T Consensus 84 ~~~~~~~a~~~lg~~~~~~~~~~---------------------------------------~~~~~~~~~A~~~~~~~l 124 (261)
T 3qky_A 84 IDPRVPQAEYERAMCYYKLSPPY---------------------------------------ELDQTDTRKAIEAFQLFI 124 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHCCCT---------------------------------------TSCCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcccc---------------------------------------cccchhHHHHHHHHHHHH
Confidence 22 12222222222210000 000466666666666665
Q ss_pred hCCCCCCHhh-----------------HHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCC--CHHHHHHHHHHHHh
Q 043191 311 RAGLMPNVVT-----------------YNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP--DLYTYNILINCFCK 371 (414)
Q Consensus 311 ~~g~~p~~~~-----------------~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~ 371 (414)
+.... +... +..+...|...|++++|.. .|+++.+..... ....+..+..+|..
T Consensus 125 ~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~------~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 197 (261)
T 3qky_A 125 DRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV------TYEAVFDAYPDTPWADDALVGAMRAYIA 197 (261)
T ss_dssp HHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH------HHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 53221 1122 2456778999999999988 999988752211 24567778888886
Q ss_pred c----------CCHHHHHHHHHhhhhCCCCCCH----HHHHHHHHHHHHcCCcccc
Q 043191 372 I----------GRVSSGFVIFGRILPSCFTPDA----VTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 372 ~----------g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a 413 (414)
. |++++|...|+++++. .|+. .....+-..+...++++++
T Consensus 198 ~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 198 YAEQSVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcccchhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 6 8999999999999985 3443 4555566666666655543
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.95 E-value=7.7e-09 Score=81.90 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=121.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHhcCCcchH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC-FCKMGRVSHG 144 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~~a 144 (414)
..|++++|+..|+......| .+...+..+...+.+.|++++|+..|++.... .|+...+..+... +...+....+
T Consensus 18 ~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~a 93 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQ--SRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQAAESPE 93 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHH--TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHHTSCHH
T ss_pred HcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhcccchH
Confidence 45899999999999988876 77889999999999999999999999998765 3344433322212 2233344567
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL-DVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.+.+++..+.. +-+...+..+...+...|++++|...|+++.+..-.+ +...+..+..++...|+.++|...|++...
T Consensus 94 ~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 94 LKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 89999988874 4468889999999999999999999999998764222 356888999999999999999999987653
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=3.5e-06 Score=72.28 Aligned_cols=170 Identities=11% Similarity=-0.021 Sum_probs=132.2
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH----Hhc---
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK--HYDTVLSLFKRLNLTGLFPDRYTYNILINCF----CKM--- 138 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~----~~~--- 138 (414)
...++|+++++.+...+| .+..+||.--.++...+ ++++++++++.+..... -+..+|+.--..+ ...
T Consensus 47 e~s~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcccc
Confidence 344799999999999987 78889999999999998 99999999999987632 2445566544444 445
Q ss_pred CCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 043191 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM--EAAALFTKLRVFGCELDVFTYNTLINGLCRTGH------ 210 (414)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------ 210 (414)
+++++++++++.+.+.. +-+..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|-..|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 78999999999999886 558889988888888889888 9999999999876 4578888877777777776
Q ss_pred hHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhh
Q 043191 211 TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249 (414)
Q Consensus 211 ~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~ 249 (414)
++++++.++.+.... +-|...|+.+-..+.+.
T Consensus 202 ~~eEl~~~~~aI~~~-------p~n~SaW~y~~~ll~~~ 233 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-------PQNPSTWNYLLGIHERF 233 (306)
T ss_dssp HHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-------CCCccHHHHHHHHHHhc
Confidence 888999998888743 33445555554444443
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=2.2e-08 Score=96.98 Aligned_cols=177 Identities=8% Similarity=-0.087 Sum_probs=119.0
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 043191 101 AKTKHYDTVLSLFKRLN--------LTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA 172 (414)
Q Consensus 101 ~~~~~~~~a~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 172 (414)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.|++..+.. +-+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66777888888888776 221 2245667777777778888888888888777764 4466777777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCC
Q 043191 173 ESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252 (414)
Q Consensus 173 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 252 (414)
.|++++|.+.|++..+.. +-+...|..+..+|.+.|++++ .+.|++..+. .|+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~---------------- 533 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGV---------------- 533 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTC----------------
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCch----------------
Confidence 888888888888777664 3356677777777778888877 7777777763 3332
Q ss_pred CchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcC
Q 043191 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332 (414)
Q Consensus 253 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 332 (414)
...|..+..++.+.|++++|.+.|++..+.... +...+..+..++...+
T Consensus 534 ------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 534 ------------------------------ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp ------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred ------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccC
Confidence 223445666777779999999999998775332 3566777777776666
Q ss_pred Chhh
Q 043191 333 QMDE 336 (414)
Q Consensus 333 ~~~~ 336 (414)
+.++
T Consensus 583 ~~~~ 586 (681)
T 2pzi_A 583 STSE 586 (681)
T ss_dssp ----
T ss_pred CCCC
Confidence 5333
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.91 E-value=6.3e-08 Score=78.90 Aligned_cols=113 Identities=11% Similarity=0.076 Sum_probs=58.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHH----------------HHHHHHhcCCcchHHHHHHHHH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD-RYTYNI----------------LINCFCKMGRVSHGFVVLGRIL 152 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~ 152 (414)
+..+......+.+.|++++|+..|++..+. .|+ ...|.. +..++.+.|++++|...|++.+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555566677888888888888887765 343 334444 4444444455555555554444
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043191 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206 (414)
Q Consensus 153 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 206 (414)
+.. +-+...+..+...+...|++++|...|++..+.. +-+..+|..+..+|.
T Consensus 82 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 82 QKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 442 2234444444444444555555555554444432 223344444444443
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.91 E-value=3.2e-08 Score=85.11 Aligned_cols=154 Identities=14% Similarity=0.006 Sum_probs=128.0
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHhcCCcch
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNI-LINCFCKMGRVSH 143 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~~~~~~ 143 (414)
...|++++|+..|+......| .+...+..+...+.+.|++++|...+++.... .|+...... ....+.+.++.+.
T Consensus 128 ~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQLSN--QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTP 203 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCH
T ss_pred HhCCCHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCc
Confidence 467999999999999999887 77888999999999999999999999998765 455443332 2334667788899
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043191 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCE-LDVFTYNTLINGLCRTGHTIVALNLFEEMA 222 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 222 (414)
|.+.+++..+.. +.+...+..+...+...|++++|...|.++....-. .+...+..++..|...|+.++|...|++..
T Consensus 204 a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 204 EIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999998875 567889999999999999999999999999887421 126789999999999999999999888765
Q ss_pred c
Q 043191 223 N 223 (414)
Q Consensus 223 ~ 223 (414)
.
T Consensus 283 ~ 283 (287)
T 3qou_A 283 Y 283 (287)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.90 E-value=1.5e-08 Score=77.81 Aligned_cols=141 Identities=9% Similarity=-0.081 Sum_probs=113.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
...|++++|+..+.......+ .+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p--~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPR--QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHH--HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhcccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 456788999999998876543 456677789999999999999999999988763 23678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL-FTKLRVFGCELDVFTYNTLINGLCRTGH 210 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~ 210 (414)
...|++.++.. +-+...+..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999875 44688899999999999999876665 57777653 4467778877777766664
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=5e-08 Score=84.77 Aligned_cols=204 Identities=12% Similarity=0.007 Sum_probs=109.2
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
..|++++|.++++...+... .. + +...+++++|...|++. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 34566777777776655432 11 0 01135556666555543 33455566666666
Q ss_pred HHHHHHHHcCC---CC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCChHHH
Q 043191 146 VVLGRILRSCF---TP--DAVTFTSLIKDLCAESRIMEAAALFTKLRVF----GCELD--VFTYNTLINGLCRTGHTIVA 214 (414)
Q Consensus 146 ~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~--~~~~~~li~~~~~~g~~~~a 214 (414)
..|.+..+... .+ -..+|+.+...|.+.|++++|+..|++..+. | .+. ..+++.+...|.. |++++|
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 66665544310 00 1235666666666777777777766665432 1 111 3456666777766 788888
Q ss_pred HHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHH
Q 043191 215 LNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLC 294 (414)
Q Consensus 215 ~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 294 (414)
+..|++..+. .+........ ..+++.+...|.
T Consensus 135 ~~~~~~Al~~--------~~~~~~~~~~----------------------------------------~~~~~~lg~~~~ 166 (307)
T 2ifu_A 135 VHLYQQAAAV--------FENEERLRQA----------------------------------------AELIGKASRLLV 166 (307)
T ss_dssp HHHHHHHHHH--------HHHTTCHHHH----------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHH--------HHhCCChhHH----------------------------------------HHHHHHHHHHHH
Confidence 7777776652 1211000000 112344556666
Q ss_pred hcCChhHHHHHHHhchhC----CCCCC-HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHH
Q 043191 295 KISKLKIARELFQSLPRA----GLMPN-VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLN 351 (414)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~ 351 (414)
+.|++++|+..|++.... +..+. ...+..+..++...|++++|.. .|++..
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~------~~~~al 222 (307)
T 2ifu_A 167 RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK------CVRESY 222 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH------HHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH------HHHHHh
Confidence 667777777777766442 11111 1244555556666677777766 666665
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=5.7e-07 Score=78.06 Aligned_cols=144 Identities=8% Similarity=-0.020 Sum_probs=109.0
Q ss_pred CCCC-CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHH
Q 043191 63 GDIT-SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT----GLFP-DRYTYNILINCFC 136 (414)
Q Consensus 63 ~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~ 136 (414)
++.+ .++++.|...|+.. ...|...|++++|...|.+..+. |-.. -..+|+.+..+|.
T Consensus 24 ~~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~ 87 (307)
T 2ifu_A 24 SFMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK 87 (307)
T ss_dssp CSSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3444 57888888887764 45677889999999999886533 2111 1457888899999
Q ss_pred hcCCcchHHHHHHHHHHcC--C-CC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHH
Q 043191 137 KMGRVSHGFVVLGRILRSC--F-TP--DAVTFTSLIKDLCAESRIMEAAALFTKLRVF----GCEL-DVFTYNTLINGLC 206 (414)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~ 206 (414)
..|++++|...|++..+.- . .+ ...+++.+...|.. |++++|+..|++.... |-.. ...+++.+...|.
T Consensus 88 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 166 (307)
T 2ifu_A 88 DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV 166 (307)
T ss_dssp HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 9999999999999876641 1 12 13567888888988 9999999999987653 1111 1467888999999
Q ss_pred hcCChHHHHHHHHHHHc
Q 043191 207 RTGHTIVALNLFEEMAN 223 (414)
Q Consensus 207 ~~g~~~~a~~~~~~m~~ 223 (414)
+.|++++|+..|++...
T Consensus 167 ~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 167 RQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999999886
No 103
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.84 E-value=3.5e-07 Score=77.80 Aligned_cols=193 Identities=10% Similarity=0.004 Sum_probs=137.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCC-CCCHHhHHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF-TPDAVTFTSL 166 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 166 (414)
|....+..+...+ .. .|+..|++....+ .++..++..+..++...|++++|++++.+.+..|- .-+...+..+
T Consensus 69 ~~~~a~~~la~~~-~~----~a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~ 142 (310)
T 3mv2_B 69 KLGKVLDLYVQFL-DT----KNIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLA 142 (310)
T ss_dssp TTHHHHHHHHHHH-TT----TCCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cc----cHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHH
Confidence 4443444444444 22 2778888887665 45666667888999999999999999999877653 2367788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHH--hcC--ChHHHHHHHHHHHcCCCCCCccccCchh
Q 043191 167 IKDLCAESRIMEAAALFTKLRVFGCEL-----DVFTYNTLINGLC--RTG--HTIVALNLFEEMANGNGEFGVVCEPDAI 237 (414)
Q Consensus 167 i~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~m~~~~~~~~~~~~p~~~ 237 (414)
+..+.+.|+.+.|.+.+++|.+. .| +..+...|..++. ..| ++.+|..+|+++.+. .|+..
T Consensus 143 vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------~p~~~ 212 (310)
T 3mv2_B 143 IEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--------FPTWK 212 (310)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------SCSHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------CCCcc
Confidence 99999999999999999999876 56 3555555665533 334 899999999999874 35533
Q ss_pred hHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-----------ccccccHHHHHHHHHhcCChhHHHHH
Q 043191 238 TYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-----------QCLCLNFLCLIDGLCKISKLKIAREL 305 (414)
Q Consensus 238 ~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~ 305 (414)
+...++.++. ..|++++|...++ +... +.+..+...+|......|+ +|.++
T Consensus 213 ~~~lLln~~~---------------~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l 275 (310)
T 3mv2_B 213 TQLGLLNLHL---------------QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDL 275 (310)
T ss_dssp HHHHHHHHHH---------------HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHH
T ss_pred cHHHHHHHHH---------------HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHH
Confidence 4344444443 3588999999987 4432 3355666566666666776 88999
Q ss_pred HHhchhCC
Q 043191 306 FQSLPRAG 313 (414)
Q Consensus 306 ~~~m~~~g 313 (414)
++++.+..
T Consensus 276 ~~qL~~~~ 283 (310)
T 3mv2_B 276 TNQLVKLD 283 (310)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 99998864
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=2e-07 Score=76.86 Aligned_cols=156 Identities=11% Similarity=-0.005 Sum_probs=119.9
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHh--
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPP-VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDR----YTYNILINCFCK-- 137 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~-- 137 (414)
...|++++|+..|+.+....|..+. ..++..+..++.+.|++++|+..|+++.+. .|+. ..+..+..++..
T Consensus 15 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 15 LQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHHHHhhh
Confidence 3458999999999999988762232 467888999999999999999999998865 3432 234444444443
Q ss_pred ----------------cCCcchHHHHHHHHHHcCCCCCHHhH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 043191 138 ----------------MGRVSHGFVVLGRILRSCFTPDAVTF-----------------TSLIKDLCAESRIMEAAALFT 184 (414)
Q Consensus 138 ----------------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~ 184 (414)
.|++++|...|+++++.. +-+...+ -.+...|.+.|++++|...|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 171 (225)
T 2yhc_A 93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVE 171 (225)
T ss_dssp C--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 578999999999998863 2222222 234567889999999999999
Q ss_pred HHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 185 KLRVFGCELD----VFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 185 ~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
++.+. .|+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 172 ~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 172 GMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 99876 343 2568889999999999999999999998765
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=4.9e-07 Score=74.57 Aligned_cols=172 Identities=13% Similarity=0.050 Sum_probs=117.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH---HhH
Q 043191 89 PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL-FP-DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA---VTF 163 (414)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 163 (414)
+...+..+...+.+.|++++|+..|+++.+... .| ....+..+..++.+.|++++|+..|+++.+.... +. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 345666778889999999999999999986521 11 1356778889999999999999999999886422 22 134
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCH-HHH-----------------HHHHHHHHh
Q 043191 164 TSLIKDLCA------------------ESRIMEAAALFTKLRVFGCELDV-FTY-----------------NTLINGLCR 207 (414)
Q Consensus 164 ~~li~~~~~------------------~g~~~~a~~~~~~m~~~g~~~~~-~~~-----------------~~li~~~~~ 207 (414)
-.+..++.+ .|++++|...|+++.+. .|+. ..+ ..+...|.+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433 57889999999998875 3332 222 233455667
Q ss_pred cCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHH
Q 043191 208 TGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFL 287 (414)
Q Consensus 208 ~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 287 (414)
.|++++|...|+++.+. .|+.... ...+.
T Consensus 160 ~~~~~~A~~~~~~~l~~--------~p~~~~~-------------------------------------------~~a~~ 188 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRD--------YPDTQAT-------------------------------------------RDALP 188 (225)
T ss_dssp HTCHHHHHHHHHHHHHH--------STTSHHH-------------------------------------------HHHHH
T ss_pred cCcHHHHHHHHHHHHHH--------CcCCCcc-------------------------------------------HHHHH
Confidence 77777777777777663 3332211 01244
Q ss_pred HHHHHHHhcCChhHHHHHHHhchhCCC
Q 043191 288 CLIDGLCKISKLKIARELFQSLPRAGL 314 (414)
Q Consensus 288 ~li~~~~~~~~~~~a~~~~~~m~~~g~ 314 (414)
.+..+|.+.|+.++|.+.++.+...+.
T Consensus 189 ~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 189 LMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 467778888999999999998877643
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.80 E-value=4.3e-08 Score=75.24 Aligned_cols=141 Identities=9% Similarity=-0.049 Sum_probs=109.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 174 (414)
|...+...|++++|++.+...... .| +...+..+...|.+.|++++|.+.|++.++.. +-+..+|..+..+|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 344556778899999999887654 34 34566778999999999999999999999885 557889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHcCCCCCCccccCch-hhHHHHHHHHHh
Q 043191 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNL-FEEMANGNGEFGVVCEPDA-ITYSTIIDGLCK 248 (414)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~~~~~~~p~~-~~~~~li~~~~~ 248 (414)
++++|+..|++..+.. +-+..+|..+...|.+.|++++|.+. +++..+ +.|+. ..|......+..
T Consensus 80 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--------l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 80 NTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--------LFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--------HSTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------hCcCCHHHHHHHHHHHHH
Confidence 9999999999998874 34688999999999999999887665 577776 45654 444444444333
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=5.6e-07 Score=73.30 Aligned_cols=130 Identities=9% Similarity=-0.083 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 043191 91 TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDL 170 (414)
Q Consensus 91 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 170 (414)
..+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|.+.|++..+.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345567778889999999999998774 5688899999999999999999999999998875 55778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 171 CAESRIMEAAALFTKLRVFGCE--------------L-DVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 171 ~~~g~~~~a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
...|++++|.+.|++..+..-. | ....+..+..+|.+.|++++|...|+...+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999998875311 1 23678889999999999999999999998844
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=8.7e-07 Score=72.29 Aligned_cols=143 Identities=10% Similarity=0.003 Sum_probs=116.5
Q ss_pred HhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----CcchHHH
Q 043191 71 NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG----RVSHGFV 146 (414)
Q Consensus 71 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----~~~~a~~ 146 (414)
.+|++.|+...+. .++.++..+...+...+++++|+++|++..+.| +...+..|...|.. + ++++|.+
T Consensus 3 ~eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 4577788877764 457888889999999999999999999988775 56777778878877 6 8999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCChHHHHHH
Q 043191 147 VLGRILRSCFTPDAVTFTSLIKDLCA----ESRIMEAAALFTKLRVFGCE-LDVFTYNTLINGLCR----TGHTIVALNL 217 (414)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~a~~~ 217 (414)
+|++..+.| +...+..|...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++|...
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 999998766 66778888888877 88999999999999877521 126778888888888 7889999999
Q ss_pred HHHHHcC
Q 043191 218 FEEMANG 224 (414)
Q Consensus 218 ~~~m~~~ 224 (414)
|++..+.
T Consensus 152 ~~~A~~~ 158 (212)
T 3rjv_A 152 FKGSSSL 158 (212)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9999875
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.78 E-value=1e-05 Score=69.39 Aligned_cols=225 Identities=5% Similarity=-0.061 Sum_probs=161.1
Q ss_pred ChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcC--CcchHHHHHHHHHHcCCCCCHHhHHHHHHHH----Hhc---C
Q 043191 105 HYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMG--RVSHGFVVLGRILRSCFTPDAVTFTSLIKDL----CAE---S 174 (414)
Q Consensus 105 ~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g 174 (414)
..++|+++++.+... .| +...|+.--.++...+ ++++++++++.++... +-+..+|+.--..+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 346899999998876 45 4556787777788888 9999999999999876 33566676555554 444 7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCC
Q 043191 175 RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI--VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGS 252 (414)
Q Consensus 175 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 252 (414)
++++++++++++.+.. +-+-.+|+.-...+.+.|.++ ++++.++.+.+.. .-|...|+.-...+...+..
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-------~~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-------LKNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHSSGGG
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcccc
Confidence 8999999999999875 568889988888888889888 9999999998854 33444554333222221100
Q ss_pred CchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcC
Q 043191 253 ANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDG 332 (414)
Q Consensus 253 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 332 (414)
. ....++++++.++++....+. |...|+-+-..+.+.|
T Consensus 197 ~-----------------------------------------~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 197 A-----------------------------------------TDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFD 234 (306)
T ss_dssp C-----------------------------------------CHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTT
T ss_pred c-----------------------------------------hhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcC
Confidence 0 001267888888888777555 7888888888888888
Q ss_pred Chhh-hhhhhhHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 333 QMDE-TKHYETVFLLFKRLNSTG--LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 333 ~~~~-a~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
+... +.. +..+..+.+ -..++..+..+...|.+.|+.++|.++++.+.+.
T Consensus 235 ~~~~~~~~------~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 235 RSITQLEE------FSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp CCGGGGHH------HHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CChHHHHH------HHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 7544 333 555544432 1347788888999999999999999999998863
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=7.8e-07 Score=72.57 Aligned_cols=182 Identities=13% Similarity=-0.036 Sum_probs=125.3
Q ss_pred chHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHHHH
Q 043191 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG----HTIVALNL 217 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~ 217 (414)
.+|++.|++..+.| +...+..|-..|...+++++|.+.|++..+.| +...+..|...|.. + ++++|.+.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35667777777765 66777777788888888888888888887765 56667777777776 6 78888888
Q ss_pred HHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcC
Q 043191 218 FEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKIS 297 (414)
Q Consensus 218 ~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~ 297 (414)
|++..+.+ +...+..+-..|... ..-.+
T Consensus 76 ~~~A~~~g---------~~~a~~~Lg~~y~~g-------------------------------------------~g~~~ 103 (212)
T 3rjv_A 76 AEKAVEAG---------SKSGEIVLARVLVNR-------------------------------------------QAGAT 103 (212)
T ss_dssp HHHHHHTT---------CHHHHHHHHHHHTCG-------------------------------------------GGSSC
T ss_pred HHHHHHCC---------CHHHHHHHHHHHHcC-------------------------------------------CCCcc
Confidence 88887655 223333333322210 00137
Q ss_pred ChhHHHHHHHhchhCCCC-CCHhhHHHHHHHHHh----cCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043191 298 KLKIARELFQSLPRAGLM-PNVVTYNILIRGLCN----DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKI 372 (414)
Q Consensus 298 ~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 372 (414)
++++|...|++..+.|.. .+...+..|-..|.. .+++++|.. .|++..+. ..+...+..|...|...
T Consensus 104 d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~------~~~~A~~~--~~~~~a~~~Lg~~y~~g 175 (212)
T 3rjv_A 104 DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE------YFKGSSSL--SRTGYAEYWAGMMFQQG 175 (212)
T ss_dssp CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH------HHHHHHHT--SCTTHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH------HHHHHHHc--CCCHHHHHHHHHHHHcC
Confidence 888899999888776532 025677777777777 677777777 89888876 22445666677777643
Q ss_pred -C-----CHHHHHHHHHhhhhCCC
Q 043191 373 -G-----RVSSGFVIFGRILPSCF 390 (414)
Q Consensus 373 -g-----~~~~a~~~~~~m~~~g~ 390 (414)
| +.++|...|++..+.|.
T Consensus 176 ~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 176 EKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp BTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3 89999999999988774
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.75 E-value=4.4e-07 Score=77.94 Aligned_cols=168 Identities=13% Similarity=0.002 Sum_probs=106.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCch
Q 043191 157 TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDA 236 (414)
Q Consensus 157 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~ 236 (414)
+.+...+..+...+.+.|++++|...|++..... +-+...+..+...+.+.|++++|...+++... ..|+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--------~~p~~ 184 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--------QDQDT 184 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--------GGCSH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--------hhcch
Confidence 4556667778888889999999999999888764 34677888888999999999999999988876 44544
Q ss_pred hhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCC
Q 043191 237 ITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP 316 (414)
Q Consensus 237 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 316 (414)
........ ..+...++.++|...+++.......
T Consensus 185 ~~~~~~~~----------------------------------------------~~l~~~~~~~~a~~~l~~al~~~P~- 217 (287)
T 3qou_A 185 RYQGLVAQ----------------------------------------------IELLXQAADTPEIQQLQQQVAENPE- 217 (287)
T ss_dssp HHHHHHHH----------------------------------------------HHHHHHHTSCHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHH----------------------------------------------HHHHhhcccCccHHHHHHHHhcCCc-
Confidence 32211111 1122334555556666655554322
Q ss_pred CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 043191 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF-PDLYTYNILINCFCKIGRVSSGFVIFGRIL 386 (414)
Q Consensus 317 ~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 386 (414)
+...+..+...+...|++++|.. .+.++.+.... .+...+..+...|...|+.++|...+++.+
T Consensus 218 ~~~~~~~la~~l~~~g~~~~A~~------~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 218 DAALATQLALQLHQVGRNEEALE------LLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHH------HHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 45556666666666666666666 66666554211 114456666666666666666666665543
No 112
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.75 E-value=1.2e-07 Score=74.91 Aligned_cols=125 Identities=11% Similarity=0.147 Sum_probs=102.8
Q ss_pred CCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHhcCC
Q 043191 62 EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINC-FCKMGR 140 (414)
Q Consensus 62 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~ 140 (414)
..+...|++++|+..|+......+ .+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|+
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQ 94 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTT
T ss_pred hhhhhccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCC
Confidence 346778999999999999988876 778899999999999999999999999987653 2366777888888 778899
Q ss_pred c--chHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043191 141 V--SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190 (414)
Q Consensus 141 ~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 190 (414)
+ ++|...++...+.. +.+...+..+...|...|++++|...|++.....
T Consensus 95 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8 99999999998875 4467888889999999999999999999988763
No 113
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.74 E-value=9.8e-06 Score=77.51 Aligned_cols=142 Identities=11% Similarity=0.013 Sum_probs=85.5
Q ss_pred hccchhhHh-hhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCC---------CCC------------H
Q 043191 263 SFSALNKMA-FYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGL---------MPN------------V 318 (414)
Q Consensus 263 ~~~~~~~a~-~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~ 318 (414)
..++.++|. .++. .... +.+...|...+...-+.|++++|..+|+.+..... .|+ .
T Consensus 355 ~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 456666775 7777 4444 33455577788888899999999999999876310 132 2
Q ss_pred hhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHhhhhCCCCCCHHH
Q 043191 319 VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNST-GLFPDLYTYNILINCFCKI-GRVSSGFVIFGRILPSCFTPDAVT 396 (414)
Q Consensus 319 ~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~ 396 (414)
..|...+....+.|+.+.|.. +|....+. +. +....|...+..-.+. ++.+.|.++|+..++. +.-+...
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~------vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~ 506 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRK------IFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHH------HHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHH------HHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHH
Confidence 367777777778888888877 77777664 21 1122222211111222 3466777777766664 3334455
Q ss_pred HHHHHHHHHHcCCccc
Q 043191 397 FTSLIKILEINSFFRQ 412 (414)
Q Consensus 397 ~~~li~~~~~~g~~~~ 412 (414)
|...++.....|+.+.
T Consensus 507 w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhCCCHHH
Confidence 5566665555555443
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.74 E-value=1.1e-07 Score=75.25 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 163 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...|+....
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 4455667777888888888888765542 33567777888888888888888888877765
No 115
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.74 E-value=3e-05 Score=67.33 Aligned_cols=170 Identities=9% Similarity=-0.009 Sum_probs=131.2
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-C-CcchH
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK-HYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM-G-RVSHG 144 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~-~~~~a 144 (414)
...++|+++++.+...+| .+..+|+.--.++...+ .+++++++++.+..... -+..+|+.-..++.+. + +++++
T Consensus 68 e~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHH
Confidence 345789999999999987 78888998888888888 59999999999987742 2677788777777776 6 88999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM--------EAAALFTKLRVFGCELDVFTYNTLINGLCRTGH------ 210 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------ 210 (414)
+++++.+.+.. +-|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 99999999876 457888877666666666555 8999999999876 4588889888888877776
Q ss_pred -hHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhh
Q 043191 211 -TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKE 249 (414)
Q Consensus 211 -~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~ 249 (414)
++++++.+++..... +-|...|..+-..+.+.
T Consensus 223 ~~~eELe~~~~aI~~~-------P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-------PHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhc
Confidence 688999998888733 23444555544444443
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.73 E-value=2.6e-07 Score=87.66 Aligned_cols=119 Identities=16% Similarity=0.024 Sum_probs=88.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 043191 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182 (414)
Q Consensus 103 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 182 (414)
.|++++|++.|++..+.. +-+...+..+...+...|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887652 2257788999999999999999999999998875 45678899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 183 FTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 183 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
|++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998874 446788999999999999999999999999874
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=6.8e-07 Score=69.42 Aligned_cols=131 Identities=8% Similarity=-0.041 Sum_probs=105.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 169 (414)
...|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 4567788888899999999999999987653 2367788888999999999999999999998875 4567888899999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHc
Q 043191 170 LCAESRIMEAAALFTKLRVFGCELDVFTYN--TLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 170 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+...|++++|...|++..... +.+...+. .+...+.+.|++++|...+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999988764 33455553 344447788999999999887654
No 118
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=8.1e-07 Score=65.06 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=92.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043191 89 PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168 (414)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 168 (414)
+...|..+...+...|++++|.++|+++.+.. +.+..++..+...+.+.|++++|..+++++.+.. +.+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 36678888899999999999999999987653 2367788888899999999999999999988874 457788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043191 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 207 (414)
.+...|++++|...|+++.... +.+...+..+...+.+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 9999999999999999988764 3355556655555544
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=7.4e-07 Score=65.91 Aligned_cols=94 Identities=11% Similarity=-0.011 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043191 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207 (414)
Q Consensus 128 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 207 (414)
+......+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3444444445555555555555444443 2344444445555555555555555555544432 2234445555555555
Q ss_pred cCChHHHHHHHHHHHc
Q 043191 208 TGHTIVALNLFEEMAN 223 (414)
Q Consensus 208 ~g~~~~a~~~~~~m~~ 223 (414)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 120
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.69 E-value=2e-07 Score=75.29 Aligned_cols=157 Identities=10% Similarity=-0.038 Sum_probs=118.0
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCC-CHhhHHHHHHHHHhcC
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL----TGLFP-DRYTYNILINCFCKMG 139 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~~ 139 (414)
+..|++++|.+.++.+.. .+ .....+++.+...+...|++++|...+++... .+..+ ...++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC-Ch-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 567999999996666644 22 35678899999999999999999999998764 22222 3456788888999999
Q ss_pred CcchHHHHHHHHHHc----CCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhc
Q 043191 140 RVSHGFVVLGRILRS----CFT--PDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG---CELD--VFTYNTLINGLCRT 208 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~--~~~~~~li~~~~~~ 208 (414)
++++|.+.+++..+. +-. .....+..+...+...|++++|...+++..... -.+. ..++..+...+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999887664 211 124557888889999999999999999876421 0111 33567888899999
Q ss_pred CChHHHHHHHHHHHc
Q 043191 209 GHTIVALNLFEEMAN 223 (414)
Q Consensus 209 g~~~~a~~~~~~m~~ 223 (414)
|++++|.+.+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988876
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=4.9e-07 Score=77.90 Aligned_cols=159 Identities=16% Similarity=0.067 Sum_probs=121.3
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHh----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HhhHHHHHHHH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVT----SFNILFGCLAKTKHYDTVLSLFKRLNLTGLF-PD----RYTYNILINCF 135 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~ 135 (414)
...|++++|..+++......+..++.. .+..+...+...+++++|+..|++....... ++ ..+++.+..+|
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 456899999999999988654333322 3345777777888999999999998864222 22 33689999999
Q ss_pred HhcCCcchHHHHHHHHHHc-----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHH
Q 043191 136 CKMGRVSHGFVVLGRILRS-----CFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVF----GCELD-VFTYNTLING 204 (414)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~ 204 (414)
...|++++|...|++..+. +..+ ...++..+...|.+.|++++|.+.+++..+. +..+. ..+|..+..+
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 245 (293)
T 3u3w_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGEC 245 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 9999999999999998852 1122 2347888999999999999999999987653 22222 6789999999
Q ss_pred HHhcCC-hHHHHHHHHHHHc
Q 043191 205 LCRTGH-TIVALNLFEEMAN 223 (414)
Q Consensus 205 ~~~~g~-~~~a~~~~~~m~~ 223 (414)
|.+.|+ +++|.+.+++...
T Consensus 246 ~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 246 LRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHH
Confidence 999995 6999999888764
No 122
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.67 E-value=5e-08 Score=85.87 Aligned_cols=150 Identities=13% Similarity=0.002 Sum_probs=122.2
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----------------HhhHHHH
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD----------------RYTYNIL 131 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l 131 (414)
+++++|++.|+......+ .+...|..+...+.+.|++++|+..|++..+.. |+ ..+|..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p--~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKL--EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEECCCCGGGCCHHHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHH
Confidence 344556655554443332 456788999999999999999999999988663 33 4789999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 043191 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211 (414)
Q Consensus 132 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 211 (414)
..++.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.. +.+..++..+..++.+.|+.
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 5578899999999999999999999999998874 44678899999999999999
Q ss_pred HHH-HHHHHHHHc
Q 043191 212 IVA-LNLFEEMAN 223 (414)
Q Consensus 212 ~~a-~~~~~~m~~ 223 (414)
++| ..+|+.|..
T Consensus 281 ~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 281 LAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 988 446666653
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.64 E-value=1.2e-06 Score=64.75 Aligned_cols=110 Identities=9% Similarity=-0.019 Sum_probs=89.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 169 (414)
...+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.+++.++.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 4567778888999999999999999987653 3367888889999999999999999999998875 4567889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043191 170 LCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202 (414)
Q Consensus 170 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 202 (414)
|...|++++|.+.|++..+.. +-+...+..|-
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 999999999999999988764 33455554443
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.63 E-value=1e-06 Score=67.27 Aligned_cols=98 Identities=14% Similarity=0.012 Sum_probs=75.2
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043191 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203 (414)
Q Consensus 124 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 203 (414)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..... +-+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34466667777788888888888888887765 4467778888888888888888888888887764 335667777888
Q ss_pred HHHhcCChHHHHHHHHHHHc
Q 043191 204 GLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 204 ~~~~~g~~~~a~~~~~~m~~ 223 (414)
+|.+.|++++|...|+...+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888877
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.63 E-value=7.4e-07 Score=70.29 Aligned_cols=122 Identities=11% Similarity=0.124 Sum_probs=100.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHH-HHhcCCH--H
Q 043191 101 AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD-LCAESRI--M 177 (414)
Q Consensus 101 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 177 (414)
...|++++|...+++..+.. +.+...|..+..++...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45788999999999887653 3367889999999999999999999999998875 4477788888888 7789998 9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 178 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
+|...|++..... +.+...+..+...|...|++++|...|++..+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999998874 4467888899999999999999999999998843
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.62 E-value=1.8e-06 Score=63.16 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=87.5
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043191 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204 (414)
Q Consensus 125 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 204 (414)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|..+|+++.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678888899999999999999999998875 4577889999999999999999999999998864 4578889999999
Q ss_pred HHhcCChHHHHHHHHHHHcC
Q 043191 205 LCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 205 ~~~~g~~~~a~~~~~~m~~~ 224 (414)
|...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999874
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=1.2e-06 Score=64.99 Aligned_cols=120 Identities=8% Similarity=-0.045 Sum_probs=96.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHH
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (414)
..+...|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3567788889999999999999999999988653 2367788888899999999999999999998874 4467888889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043191 167 IKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209 (414)
Q Consensus 167 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 209 (414)
..++.+.|++++|.+.|++..... +.+...+..+..++.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 999999999999999999988763 234556666666666554
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.62 E-value=1.5e-06 Score=64.26 Aligned_cols=121 Identities=8% Similarity=0.037 Sum_probs=99.6
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (414)
.+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|.+.++...+.. +.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 345677888889999999999999999987653 2367788888999999999999999999998874 44678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 043191 168 KDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHT 211 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 211 (414)
..+...|++++|...|++..... +.+...+..+..++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999988764 34677788888888777764
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.60 E-value=4.2e-06 Score=68.06 Aligned_cols=145 Identities=10% Similarity=-0.106 Sum_probs=109.3
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043191 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206 (414)
Q Consensus 127 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 206 (414)
.+..+...+...|++++|.+.|++. +.|+...+..+...|.+.|++++|.+.|++..... +.+...|..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3455677888999999999999877 36688899999999999999999999999998875 456788999999999
Q ss_pred hcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccH
Q 043191 207 RTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNF 286 (414)
Q Consensus 207 ~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 286 (414)
..|++++|...|++..+.. |+..... +...+ ..........+
T Consensus 83 ~~~~~~~A~~~~~~al~~~--------~~~~~~~-----~~~~~-------------------------~~~~~~~~~~~ 124 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL--------RGNQLID-----YKILG-------------------------LQFKLFACEVL 124 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT--------TTCSEEE-----CGGGT-------------------------BCCEEEHHHHH
T ss_pred HcccHHHHHHHHHHHHHhC--------CCccHHH-----HHHhc-------------------------cccCccchHHH
Confidence 9999999999999998743 2211000 00000 00001122345
Q ss_pred HHHHHHHHhcCChhHHHHHHHhchhCCC
Q 043191 287 LCLIDGLCKISKLKIARELFQSLPRAGL 314 (414)
Q Consensus 287 ~~li~~~~~~~~~~~a~~~~~~m~~~g~ 314 (414)
..+..+|.+.|++++|...|++..+...
T Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 125 YNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 6677888889999999999999887643
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.58 E-value=4e-07 Score=69.60 Aligned_cols=105 Identities=8% Similarity=-0.090 Sum_probs=91.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (414)
.+...+..+...+.+.|++++|+..|++..... +-+...|..+..++...|++++|+..|++..+.. +-+...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 456688889999999999999999999998763 2368889999999999999999999999999886 45778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043191 168 KDLCAESRIMEAAALFTKLRVFGCELDVF 196 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 196 (414)
.+|.+.|++++|...|++..+. .|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 9999999999999999999887 45553
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.57 E-value=2.1e-06 Score=73.94 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=95.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHh----hHHHHHHHHHhcCCcchHHHHHHHHHHcCCC-CC----HHhH
Q 043191 94 NILFGCLAKTKHYDTVLSLFKRLNLTG-LFPDRY----TYNILINCFCKMGRVSHGFVVLGRILRSCFT-PD----AVTF 163 (414)
Q Consensus 94 ~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~ 163 (414)
...+..+...|++++|.+++++..+.. ..|+.. .+..+...+...+++++|+..+++..+.... .+ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 334677888999999999999987642 222321 2334666667778999999999999874322 22 2368
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 164 TSLIKDLCAESRIMEAAALFTKLRV----F-GCELD-VFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+.+...|...|++++|...|++..+ . +..+. ..+|..+...|.+.|++++|...+++..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8899999999999999999998874 1 21222 34788889999999999999999988775
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.56 E-value=3e-06 Score=62.87 Aligned_cols=116 Identities=7% Similarity=-0.053 Sum_probs=95.8
Q ss_pred CCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043191 123 PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202 (414)
Q Consensus 123 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 202 (414)
.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 356778889999999999999999999998874 4478889999999999999999999999998864 44688899999
Q ss_pred HHHHhcCChHHHHHHHHHHHcCCCCCCccccCc-hhhHHHHHHHHHh
Q 043191 203 NGLCRTGHTIVALNLFEEMANGNGEFGVVCEPD-AITYSTIIDGLCK 248 (414)
Q Consensus 203 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~-~~~~~~li~~~~~ 248 (414)
.++.+.|++++|.+.|++..+. .|+ ...+..+...+..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHH
Confidence 9999999999999999999874 343 3445555555443
No 133
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.55 E-value=1.3e-05 Score=76.65 Aligned_cols=218 Identities=11% Similarity=-0.031 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 043191 107 DTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTK 185 (414)
Q Consensus 107 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 185 (414)
+.+..+|++.... ..-+...|...+..+.+.|+.+.|. ++|++.... ++.+...|-..+....+.|++++|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456778887754 2336778888888888899999997 999999875 355677788888889999999999999999
Q ss_pred HHHcC---------CCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHcC-CCCCCccccCchhhHHHHH
Q 043191 186 LRVFG---------CELD------------VFTYNTLINGLCRTGHTIVALNLFEEMANG-NGEFGVVCEPDAITYSTII 243 (414)
Q Consensus 186 m~~~g---------~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~p~~~~~~~li 243 (414)
+.... -.|+ ..+|...+....+.|..+.|..+|....+. + ......|....
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-------~~~~~lyi~~A 476 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-------LVTPDIYLENA 476 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-------GSCTHHHHHHH
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-------CCChHHHHHHH
Confidence 87631 0132 346888888888899999999999999875 2 11222222111
Q ss_pred HHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCC--CHh
Q 043191 244 DGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMP--NVV 319 (414)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~ 319 (414)
..-.+ ..++.+.|..+|. .... +.+...|...+......|+.+.|..+|++.......+ ...
T Consensus 477 ~lE~~--------------~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~ 542 (679)
T 4e6h_A 477 YIEYH--------------ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKM 542 (679)
T ss_dssp HHHHT--------------TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHH
T ss_pred HHHHH--------------hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 10001 0123555555555 3333 2233444555555555566666666666555442211 234
Q ss_pred hHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhC
Q 043191 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNST 353 (414)
Q Consensus 320 ~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~ 353 (414)
.|...+.--.+.|+.+.+.. +.+++.+.
T Consensus 543 lw~~~~~fE~~~G~~~~~~~------v~~R~~~~ 570 (679)
T 4e6h_A 543 IFQKVIFFESKVGSLNSVRT------LEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHTCCSHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH------HHHHHHHh
Confidence 45555555555566555555 66666554
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=1.8e-06 Score=69.62 Aligned_cols=122 Identities=10% Similarity=-0.058 Sum_probs=90.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHc----CC-CCCHHhHHHHHHHHHhcCC
Q 043191 101 AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS----CF-TPDAVTFTSLIKDLCAESR 175 (414)
Q Consensus 101 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~ 175 (414)
...|++++|.++++.+... ......++..+...+...|++++|...+++..+. +. .....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4678999999966555432 1235677888999999999999999999988762 21 2234567888889999999
Q ss_pred HHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 176 IMEAAALFTKLRVF----GCEL--DVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 176 ~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+++|.+.+++.... +-.+ ...++..+...+...|++++|...+++...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999887653 2111 245678888999999999999999998875
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=8e-07 Score=67.85 Aligned_cols=97 Identities=12% Similarity=-0.122 Sum_probs=57.2
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043191 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204 (414)
Q Consensus 125 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 204 (414)
...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|++.|++..... +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344555555666666666666666665553 3355556666666666666666666666665543 2344555566666
Q ss_pred HHhcCChHHHHHHHHHHHc
Q 043191 205 LCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 205 ~~~~g~~~~a~~~~~~m~~ 223 (414)
|...|++++|...|+...+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666655
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=4.8e-07 Score=69.12 Aligned_cols=110 Identities=11% Similarity=0.026 Sum_probs=92.3
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 043191 76 VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155 (414)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 155 (414)
.|+.+....| .+...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|.+.|++..+..
T Consensus 9 ~~~~al~~~p--~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEISS--DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCCH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCCH--hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455555443 566778888999999999999999999988663 3377888889999999999999999999998875
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043191 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 156 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
+.+...+..+..+|...|++++|.+.|++..+.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457788889999999999999999999998765
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.51 E-value=3.7e-06 Score=72.35 Aligned_cols=159 Identities=15% Similarity=0.068 Sum_probs=119.4
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC--HhhHHHHHHHH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPV----TSFNILFGCLAKTKHYDTVLSLFKRLNLTGL---FPD--RYTYNILINCF 135 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~li~~~ 135 (414)
...|++++|++.++...+..+..++. ..+..+...+...|++++|+..+++..+... .+. ..+|+.+...|
T Consensus 86 ~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 2qfc_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 46689999999999888765411111 2344566677888999999999999875321 122 45788999999
Q ss_pred HhcCCcchHHHHHHHHHHc--CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHH
Q 043191 136 CKMGRVSHGFVVLGRILRS--CFTP----DAVTFTSLIKDLCAESRIMEAAALFTKLRVFG----CEL-DVFTYNTLING 204 (414)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~-~~~~~~~li~~ 204 (414)
...|++++|...|++..+. ..+. ...++..+...|.+.|++++|+..+++..... ... -..+|..+..+
T Consensus 166 ~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~ 245 (293)
T 2qfc_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGEC 245 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 9999999999999998732 1111 12578889999999999999999999876531 111 16788999999
Q ss_pred HHhcCChHHH-HHHHHHHHc
Q 043191 205 LCRTGHTIVA-LNLFEEMAN 223 (414)
Q Consensus 205 ~~~~g~~~~a-~~~~~~m~~ 223 (414)
|.+.|++++| ...+++...
T Consensus 246 y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 246 LRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHH
Confidence 9999999999 777777653
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=2.7e-06 Score=65.92 Aligned_cols=119 Identities=10% Similarity=0.014 Sum_probs=98.8
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
..|++++|+..|+......+ .+..++..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.
T Consensus 25 ~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 101 (166)
T 1a17_A 25 KAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 101 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 46899999999999998876 678899999999999999999999999988763 336778889999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 043191 146 VVLGRILRSCFTPDAVTFTS--LIKDLCAESRIMEAAALFTKLRV 188 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~ 188 (414)
+.|++..+.. +.+...+.. +...+...|++++|++.+.....
T Consensus 102 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 102 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999998874 335555533 44447788999999999887653
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=3.1e-07 Score=74.01 Aligned_cols=154 Identities=10% Similarity=-0.018 Sum_probs=103.8
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC---C-----------HhhHHHHH
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL-FP---D-----------RYTYNILI 132 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p---~-----------~~~~~~li 132 (414)
|+++.|.+.|+.-....+ .....+..+...+.+.|++++|+..|++..+... .| . ..+|..+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEKV--QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ----CCCSGGGCCHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 444555555543222211 3345677788888899999999999998876421 11 1 26788888
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 043191 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212 (414)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 212 (414)
.++...|++++|+..++...+.. +.+...+..+..+|...|++++|.+.|++..... +-+...+..+..++...++..
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998874 5577888889999999999999999999988764 346777888888887777777
Q ss_pred HHH-HHHHHHHcCC
Q 043191 213 VAL-NLFEEMANGN 225 (414)
Q Consensus 213 ~a~-~~~~~m~~~~ 225 (414)
++. ..|..+...+
T Consensus 174 ~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 174 KKDKLTFGGMFDKG 187 (198)
T ss_dssp C-------------
T ss_pred HHHHHHHHHHhccc
Confidence 766 5566655443
No 140
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=6e-06 Score=60.84 Aligned_cols=118 Identities=10% Similarity=0.012 Sum_probs=97.0
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043191 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203 (414)
Q Consensus 124 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 203 (414)
+...+..+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45677888889999999999999999998874 4578889999999999999999999999998864 446788999999
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhc
Q 043191 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEA 250 (414)
Q Consensus 204 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 250 (414)
.+...|++++|...|++..+.. +.+...+..+...+...|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-------PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHHh
Confidence 9999999999999999998743 224455666666655543
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=5.6e-06 Score=60.99 Aligned_cols=95 Identities=12% Similarity=0.007 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043191 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206 (414)
Q Consensus 127 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 206 (414)
.+..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444455555555555555555555543 3344555555555556666666666665555543 233555555556666
Q ss_pred hcCChHHHHHHHHHHHc
Q 043191 207 RTGHTIVALNLFEEMAN 223 (414)
Q Consensus 207 ~~g~~~~a~~~~~~m~~ 223 (414)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666665554
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.49 E-value=1.7e-06 Score=73.99 Aligned_cols=97 Identities=13% Similarity=0.003 Sum_probs=51.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 169 (414)
...+..+...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|.+.+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4445555555556666666666665555431 1144455555555555555555555555555442 2344455555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 043191 170 LCAESRIMEAAALFTKLRV 188 (414)
Q Consensus 170 ~~~~g~~~~a~~~~~~m~~ 188 (414)
|...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=5.6e-06 Score=69.53 Aligned_cols=151 Identities=7% Similarity=-0.086 Sum_probs=113.9
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCC--------------
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNIL-------FGCLAKTKHYDTVLSLFKRLNLTGLFPD-------------- 124 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-------------- 124 (414)
..++...|.+.|..+....| .....|+.+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP--~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE--SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhCh--hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 46899999999999999987 777888888 5777777777777776665544 1221
Q ss_pred --------HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--C
Q 043191 125 --------RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL--D 194 (414)
Q Consensus 125 --------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~ 194 (414)
....-.+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...... .| .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 1223446677889999999999999887654 443355556668899999999999998554321 11 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 195 VFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
...+..+..++.+.|++++|+..|++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 34678889999999999999999999975
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.46 E-value=2.5e-05 Score=67.04 Aligned_cols=135 Identities=10% Similarity=-0.017 Sum_probs=101.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-H----hhHHHHHHHHHhcCCcchHHHHHHHHHHcCC---CCC-
Q 043191 89 PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD-R----YTYNILINCFCKMGRVSHGFVVLGRILRSCF---TPD- 159 (414)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~- 159 (414)
....+...+..+...|++++|.+.+.+..+.....+ . ..+..+...+...|++++|...+++..+... .+.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345566778888999999999999998776532211 1 2234456667788999999999999876421 112
Q ss_pred -HHhHHHHHHHHHhcCCHHHHHHHHHHHHH---c-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 160 -AVTFTSLIKDLCAESRIMEAAALFTKLRV---F-GCEL--DVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 160 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
..+|+.+...|...|++++|...|++..+ . +-.+ ...+|..+...|.+.|++++|...+++..+
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45788999999999999999999998873 2 1111 125888999999999999999999998875
No 145
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.44 E-value=0.00018 Score=62.54 Aligned_cols=233 Identities=11% Similarity=0.010 Sum_probs=152.4
Q ss_pred CChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcC-CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-C-CHHHH
Q 043191 104 KHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMG-RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAE-S-RIMEA 179 (414)
Q Consensus 104 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~a 179 (414)
+..++|+++++++... .| +..+|+.--.++...+ .+++++++++.++... +-+..+|+.--..+.+. + +++++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3456899999998876 34 5556777777777778 5999999999999886 44778888877777776 7 88999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcC
Q 043191 180 AALFTKLRVFGCELDVFTYNTLINGLCRTGHTI--------VALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAG 251 (414)
Q Consensus 180 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 251 (414)
+++++++.+.. +.|-.+|+--...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-------p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-------GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhccc
Confidence 99999998765 457778877666665555555 8888888888743 3344555554444333211
Q ss_pred CCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhc
Q 043191 252 SANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND 331 (414)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 331 (414)
... ....++++++.+++.....+. |...|+-+-..+.+.
T Consensus 217 ~~~----------------------------------------~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 217 AET----------------------------------------SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHF 255 (349)
T ss_dssp CCC----------------------------------------CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred ccc----------------------------------------chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 000 001256777777777765444 667777666666655
Q ss_pred CChhh----------hhh----hhhHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 332 GQMDE----------TKH----YETVFLLFKRLNSTG-----LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 332 g~~~~----------a~~----~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
|.... +-. .........++...+ -.+++..+..++..|...|+.++|.++++.+.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 256 SLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp TCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 54310 000 000000222222211 1357888999999999999999999999998754
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.44 E-value=4.5e-06 Score=63.10 Aligned_cols=94 Identities=11% Similarity=-0.136 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043191 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCR 207 (414)
Q Consensus 128 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 207 (414)
+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|+..|++..... +.+...+..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344444555555555555555555443 2344455555555555555555555555555443 2234445555555555
Q ss_pred cCChHHHHHHHHHHHc
Q 043191 208 TGHTIVALNLFEEMAN 223 (414)
Q Consensus 208 ~g~~~~a~~~~~~m~~ 223 (414)
.|++++|...|+...+
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.44 E-value=3.6e-06 Score=71.87 Aligned_cols=85 Identities=14% Similarity=0.079 Sum_probs=45.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
..|++++|+..|+......+ .+...|..+..++.+.|++++|+..+++..+.. +-+...+..+..++...|++++|.
T Consensus 16 ~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 92 (281)
T 2c2l_A 16 VGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAI 92 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44555555555555555543 345555555555555555555555555554431 113445555555555555555555
Q ss_pred HHHHHHHH
Q 043191 146 VVLGRILR 153 (414)
Q Consensus 146 ~~~~~~~~ 153 (414)
..|++..+
T Consensus 93 ~~~~~al~ 100 (281)
T 2c2l_A 93 ANLQRAYS 100 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.43 E-value=1.1e-05 Score=58.15 Aligned_cols=110 Identities=10% Similarity=-0.020 Sum_probs=80.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043191 89 PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168 (414)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 168 (414)
....+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34567777888888888888888888877652 2256677778888888888888888888887764 346777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043191 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTL 201 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 201 (414)
++...|++++|.+.+++..+.. +.+...+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 8888888888888888877653 2334444433
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=1.5e-05 Score=57.46 Aligned_cols=100 Identities=10% Similarity=-0.061 Sum_probs=87.6
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043191 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203 (414)
Q Consensus 124 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 203 (414)
+...+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34567788889999999999999999998875 4578889999999999999999999999998874 446888999999
Q ss_pred HHHhcCChHHHHHHHHHHHcCC
Q 043191 204 GLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 204 ~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
++...|++++|.+.|++..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999998743
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.8e-05 Score=59.81 Aligned_cols=113 Identities=12% Similarity=0.009 Sum_probs=91.3
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHh
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD----RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT 162 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (414)
..+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..++...|++++|.+.++...+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 356778888999999999999999999998876 455 5778888889999999999999999988874 446778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043191 163 FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203 (414)
Q Consensus 163 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 203 (414)
+..+..++...|++++|...|++..... +.+...+..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 8888999999999999999999988763 234444444433
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=2.4e-06 Score=64.67 Aligned_cols=100 Identities=11% Similarity=-0.011 Sum_probs=85.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (414)
.+...+..+...+.+.|++++|+..|++..... +.+...|..+..++.+.|++++|...|++..+.. +.+...+..+.
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 455667778888999999999999999988763 2367788889999999999999999999999875 55777888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 043191 168 KDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
.+|...|++++|.+.|++....
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998765
No 152
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.39 E-value=5.1e-06 Score=59.36 Aligned_cols=97 Identities=11% Similarity=-0.007 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 043191 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCEL--DVFTYNTLIN 203 (414)
Q Consensus 126 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~ 203 (414)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.|++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344445555555555555555555555543 2344555555666666666666666666665542 22 3555666666
Q ss_pred HHHhc-CChHHHHHHHHHHHcC
Q 043191 204 GLCRT-GHTIVALNLFEEMANG 224 (414)
Q Consensus 204 ~~~~~-g~~~~a~~~~~~m~~~ 224 (414)
++.+. |++++|.+.++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 66666 6666666666666653
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.3e-05 Score=58.95 Aligned_cols=98 Identities=6% Similarity=-0.016 Sum_probs=82.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKD 169 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 169 (414)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4567788888899999999999999987653 2367888889999999999999999999998875 4467888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 043191 170 LCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 170 ~~~~g~~~~a~~~~~~m~~~ 189 (414)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999988765
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.37 E-value=1.1e-05 Score=62.58 Aligned_cols=99 Identities=7% Similarity=-0.062 Sum_probs=56.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043191 89 PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168 (414)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 168 (414)
+...|..+...+.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44455566666666666666666666655442 1144555555666666666666666666665553 334555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 043191 169 DLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~ 189 (414)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666666666666555543
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=1.6e-05 Score=59.36 Aligned_cols=97 Identities=11% Similarity=-0.095 Sum_probs=48.7
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043191 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204 (414)
Q Consensus 125 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 204 (414)
...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..... +.+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3444444444555555555555555544443 2234445555555555555555555555554443 2234455555555
Q ss_pred HHhcCChHHHHHHHHHHHc
Q 043191 205 LCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 205 ~~~~g~~~~a~~~~~~m~~ 223 (414)
|...|++++|...|++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555544
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=1.4e-05 Score=59.09 Aligned_cols=97 Identities=12% Similarity=0.093 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHH
Q 043191 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG--CELD----VFTYN 199 (414)
Q Consensus 126 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~----~~~~~ 199 (414)
..+..+...+.+.|++++|++.|++.++.. +-+...|+.+..+|.+.|++++|++.+++..+.. ...+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566777777777777777777777764 4456777777788888888888888887766532 1111 24677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHc
Q 043191 200 TLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 200 ~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.+..++...|++++|++.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788888899999999999998876
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=1.4e-05 Score=58.89 Aligned_cols=97 Identities=11% Similarity=0.025 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH
Q 043191 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGC--ELD----VFTYN 199 (414)
Q Consensus 126 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~~~ 199 (414)
..+..+...+...|+++.|...|++..+.. +.+...+..+...+...|++++|...+++...... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666777777777777666653 34556666777777777777777777777665421 111 56677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHc
Q 043191 200 TLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 200 ~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.+..++...|++++|.+.|+...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 777778888888888888888776
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=7.4e-06 Score=60.39 Aligned_cols=112 Identities=11% Similarity=0.035 Sum_probs=89.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCC--CCC----HHhH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF--TPD----AVTF 163 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 163 (414)
...|..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++...+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567888889999999999999999987653 33677888889999999999999999999887631 122 6778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043191 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204 (414)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 204 (414)
..+...+...|++++|.+.|++..+. .|+......+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 88889999999999999999998886 3566555555443
No 159
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.31 E-value=0.00042 Score=64.06 Aligned_cols=306 Identities=11% Similarity=-0.031 Sum_probs=177.2
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHhC-CCCC-CHhhHHHHHHHHH----hcCC
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKH-YDTVLSLFKRLNLT-GLFP-DRYTYNILINCFC----KMGR 140 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~-g~~p-~~~~~~~li~~~~----~~~~ 140 (414)
++++.+..+|+..... .|++..|..-+....+.+. .+.+..+|+..... |..| +...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 6789999999998874 4788899988888877763 45677778876643 5333 5667776666543 2345
Q ss_pred cchHHHHHHHHHHcCCCCCHHh------------------------------------------------HHHHHHHHHh
Q 043191 141 VSHGFVVLGRILRSCFTPDAVT------------------------------------------------FTSLIKDLCA 172 (414)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~------------------------------------------------~~~li~~~~~ 172 (414)
.+.+.++|++.+......-... |...+..-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 6778888888876321110111 1111111111
Q ss_pred c--CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHH
Q 043191 173 E--SR-----IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDG 245 (414)
Q Consensus 173 ~--g~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~ 245 (414)
. |- .+.+..+|+++.... +.+...|...+.-+.+.|+.++|..+|++... . |....... .
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~--------~-P~~~~l~~---~ 251 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE--------M-SDGMFLSL---Y 251 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------H-CCSSHHHH---H
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------C-CCcHHHHH---H
Confidence 0 00 234556777766543 44577788788888889999999999999887 4 44432221 2
Q ss_pred HHhhcCCCchhHHHHHhhccchhhHhhhhh-----hhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhh
Q 043191 246 LCKEAGSANFLGFSCMASFSALNKMAFYFP-----LVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVT 320 (414)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 320 (414)
|......... + +.+.++..... ..........|...+....+.+.++.|..+|++. .. ...+...
T Consensus 252 y~~~~e~~~~--~------~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v 321 (493)
T 2uy1_A 252 YGLVMDEEAV--Y------GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHV 321 (493)
T ss_dssp HHHHTTCTHH--H------HHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHH
T ss_pred HHhhcchhHH--H------HHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHH
Confidence 2221111100 0 00111100000 0001112345667777777778899999999988 32 1123344
Q ss_pred HHHHHHHHHh-cCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHH
Q 043191 321 YNILIRGLCN-DGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTS 399 (414)
Q Consensus 321 ~~~li~~~~~-~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 399 (414)
|......-.. .++.+.|.. +|+...+.- .-++..|...++...+.|+.+.|..+|+++.+ ....|..
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~------ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~ 389 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYN------IFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDS 389 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHH------HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHH------HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHH
Confidence 4322221122 235777877 888887742 22355666677777888999999999988742 4666777
Q ss_pred HHHHHHHcCCcc
Q 043191 400 LIKILEINSFFR 411 (414)
Q Consensus 400 li~~~~~~g~~~ 411 (414)
.+..=...|+.+
T Consensus 390 ~~~fE~~~G~~~ 401 (493)
T 2uy1_A 390 MIEYEFMVGSME 401 (493)
T ss_dssp HHHHHHHHSCHH
T ss_pred HHHHHHHCCCHH
Confidence 766656666554
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.2e-05 Score=73.27 Aligned_cols=158 Identities=11% Similarity=-0.077 Sum_probs=115.8
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCH---------------hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHh---
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPV---------------TSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDRY--- 126 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~--- 126 (414)
+.|++++|++.|..+.+..+...+. .++..+...|.+.|++++|.+.+..+... +..++..
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVK 95 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence 4489999999999998876522221 24778999999999999999999987542 1112222
Q ss_pred -hHHHHHHHHHhcCCcchHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---CCCH
Q 043191 127 -TYNILINCFCKMGRVSHGFVVLGRILRS----CFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVF--GC---ELDV 195 (414)
Q Consensus 127 -~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~---~~~~ 195 (414)
+.+.+-..+...|+++.+.+++...... +..+ -..++..+...|...|++++|..+++++... +. ....
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence 2233333444568899999998877652 2222 2457788999999999999999999987653 11 1124
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 196 FTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 196 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.+|..++..|...|++++|..++++...
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 6788999999999999999999988765
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.28 E-value=1.2e-05 Score=57.44 Aligned_cols=101 Identities=7% Similarity=0.031 Sum_probs=85.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCC--CHHhHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP--DAVTFTS 165 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 165 (414)
.+...|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 456678888889999999999999999987653 2367788888899999999999999999998874 34 5788889
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHcC
Q 043191 166 LIKDLCAE-SRIMEAAALFTKLRVFG 190 (414)
Q Consensus 166 li~~~~~~-g~~~~a~~~~~~m~~~g 190 (414)
+...+... |++++|.+.+++.....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999999 99999999999988764
No 162
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.28 E-value=3.7e-05 Score=64.58 Aligned_cols=98 Identities=8% Similarity=-0.097 Sum_probs=59.3
Q ss_pred HHHhcCChhHHHHHHHhchhCCCCCC--HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 043191 292 GLCKISKLKIARELFQSLPRAGLMPN--VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPD--LYTYNILIN 367 (414)
Q Consensus 292 ~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~ 367 (414)
.+.+.+++++|+..|+...... .|. ...+..+-.++...|++++|+. .|++.......|. .........
T Consensus 144 l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~------~l~~a~~g~~~P~~~~da~~~~gl 216 (282)
T 4f3v_A 144 VYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAER------RLTEANDSPAGEACARAIAWYLAM 216 (282)
T ss_dssp HHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHH------HHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHH------HHHHHhcCCCCccccHHHHHHHHH
Confidence 4455577777777777554421 111 2245556667777777777777 7777764332243 234555566
Q ss_pred HHHhcCCHHHHHHHHHhhhhCCCCCCHHHHH
Q 043191 368 CFCKIGRVSSGFVIFGRILPSCFTPDAVTFT 398 (414)
Q Consensus 368 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 398 (414)
++.+.|+.++|..+|+++... .|+...+.
T Consensus 217 aL~~lGr~deA~~~l~~a~a~--~P~~~~~~ 245 (282)
T 4f3v_A 217 ARRSQGNESAAVALLEWLQTT--HPEPKVAA 245 (282)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCcHHHHH
Confidence 677778888888888877774 45533333
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=2.3e-05 Score=57.87 Aligned_cols=107 Identities=9% Similarity=-0.015 Sum_probs=80.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCC--CCC----HHhH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF--TPD----AVTF 163 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 163 (414)
..++..+...+.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.+++.++... ..+ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4567778888889999999999999887652 22577788888899999999999999988876421 111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043191 164 TSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199 (414)
Q Consensus 164 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 199 (414)
..+..++...|++++|++.|++.... .||..+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 77778888899999999999887765 45655443
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.26 E-value=2.4e-05 Score=58.34 Aligned_cols=101 Identities=14% Similarity=0.036 Sum_probs=88.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHH
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (414)
..+...|..+...+...|++++|+..|++..... +.+...|..+..++...|++++|...++...+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 4678889999999999999999999999987763 2367889999999999999999999999999875 4478889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 043191 167 IKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 167 i~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
..+|...|++++|...|++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=1.4e-05 Score=58.39 Aligned_cols=91 Identities=10% Similarity=0.015 Sum_probs=45.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043191 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210 (414)
Q Consensus 131 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 210 (414)
+...+.+.|++++|...|++.++.. +.+...|..+..++...|++++|+..|++..+.. +-+...+..+..+|.+.|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3444445555555555555555442 2244445555555555555555555555554442 2234445555555555555
Q ss_pred hHHHHHHHHHHHc
Q 043191 211 TIVALNLFEEMAN 223 (414)
Q Consensus 211 ~~~a~~~~~~m~~ 223 (414)
+++|...|++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=2.8e-05 Score=60.21 Aligned_cols=94 Identities=11% Similarity=-0.043 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043191 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLC 206 (414)
Q Consensus 127 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 206 (414)
.+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..|++..... +.+...|..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444445555555555555444442 2234444444444555555555555555444432 223444444445555
Q ss_pred hcCChHHHHHHHHHHH
Q 043191 207 RTGHTIVALNLFEEMA 222 (414)
Q Consensus 207 ~~g~~~~a~~~~~~m~ 222 (414)
..|++++|...|++..
T Consensus 91 ~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGI 106 (164)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 5555555555444443
No 167
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.24 E-value=1.7e-05 Score=69.54 Aligned_cols=121 Identities=9% Similarity=0.022 Sum_probs=102.9
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCCCCC--------------HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 043191 64 DITSITPNEALCVFDYMLNMRPSRPP--------------VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYN 129 (414)
Q Consensus 64 ~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 129 (414)
+.+.|++++|+..|+......+ ... ..+|..+..++.+.|++++|+..|++..+.. +.+...|.
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p-~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~ 234 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLE-YESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLS 234 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTT-TCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhh-ccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 3466899999999999999876 222 6889999999999999999999999988763 33778899
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 043191 130 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEA-AALFTKLR 187 (414)
Q Consensus 130 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 187 (414)
.+..+|...|++++|...|++.++.. +-+...+..+..++.+.|+.++| ...|..|.
T Consensus 235 ~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 235 RRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875 45678889999999999999988 44666664
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=5.4e-05 Score=57.09 Aligned_cols=98 Identities=13% Similarity=-0.073 Sum_probs=86.3
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043191 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD----AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199 (414)
Q Consensus 124 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 199 (414)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...|...|++++|...+++..... +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 5677888899999999999999999999876 455 6788889999999999999999999988764 34678888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 200 TLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 200 ~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
.+..+|...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999873
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.22 E-value=1.3e-06 Score=80.29 Aligned_cols=149 Identities=7% Similarity=-0.024 Sum_probs=115.0
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----------------HhhHHHHH
Q 043191 69 TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD----------------RYTYNILI 132 (414)
Q Consensus 69 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~li 132 (414)
++++|++.|+......+ .....|..+...+.+.|++++|+..|++..+. .|+ ...|..+.
T Consensus 249 ~~~~A~~~~~~~~~~~~--~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKL--EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEECCCCGGGSCHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHH
Confidence 44556655554433322 34567888999999999999999999998764 232 57888899
Q ss_pred HHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 043191 133 NCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTI 212 (414)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 212 (414)
.+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 5578889999999999999999999999998764 335667888888888888888
Q ss_pred HHHH-HHHHHHc
Q 043191 213 VALN-LFEEMAN 223 (414)
Q Consensus 213 ~a~~-~~~~m~~ 223 (414)
++.+ ++..|..
T Consensus 403 ~a~~~~~~~~f~ 414 (457)
T 1kt0_A 403 ERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 7764 4555543
No 170
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.20 E-value=0.00038 Score=64.36 Aligned_cols=105 Identities=12% Similarity=0.043 Sum_probs=76.4
Q ss_pred CCC-CHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-cch
Q 043191 66 TSI-TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR-VSH 143 (414)
Q Consensus 66 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~ 143 (414)
+.| +++.|..+|+.+...-| . |+++.+..+|++.... .|+...|...+....+.++ .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P---~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYM---S--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHHHH---T--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHHCC---C--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHH
Confidence 345 37889999998877654 1 7899999999998875 5899999988888777763 466
Q ss_pred HHHHHHHHHHc-CC-CCCHHhHHHHHHHHH----hcCCHHHHHHHHHHHHHc
Q 043191 144 GFVVLGRILRS-CF-TPDAVTFTSLIKDLC----AESRIMEAAALFTKLRVF 189 (414)
Q Consensus 144 a~~~~~~~~~~-~~-~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~ 189 (414)
...+|+..+.. |. ..+...|...+..+. ..|+.+.+.++|++....
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 77888887764 53 346677888877654 346788999999999874
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.18 E-value=1.7e-05 Score=63.61 Aligned_cols=142 Identities=5% Similarity=-0.143 Sum_probs=105.5
Q ss_pred ccchhhHhhhhhh-hhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCC-CC--------------HhhHHHHHH
Q 043191 264 FSALNKMAFYFPL-VRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLM-PN--------------VVTYNILIR 326 (414)
Q Consensus 264 ~~~~~~a~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~--------------~~~~~~li~ 326 (414)
.+.++++.+.+.+ ... ......+..+...+...|++++|...|++..+.... |+ ...|..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 4677777777773 222 344566778888999999999999999998764322 10 267888889
Q ss_pred HHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHH
Q 043191 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEI 406 (414)
Q Consensus 327 ~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 406 (414)
+|...|++++|.. .++...+.. +.+...+..+..+|...|++++|...|++.++.. .-+...+..+..++..
T Consensus 97 ~~~~~~~~~~A~~------~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 97 CYNKNKDYPKAID------HASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHTTCHHHHHH------HHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHH------HHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence 9999999999988 888888753 3367889999999999999999999999998753 2256777888888777
Q ss_pred cCCcccc
Q 043191 407 NSFFRQV 413 (414)
Q Consensus 407 ~g~~~~a 413 (414)
.++.+++
T Consensus 169 ~~~~~~~ 175 (198)
T 2fbn_A 169 LKEARKK 175 (198)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 7665543
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.17 E-value=0.0015 Score=56.41 Aligned_cols=225 Identities=12% Similarity=0.005 Sum_probs=153.4
Q ss_pred HHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043191 70 PNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKH----------YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139 (414)
Q Consensus 70 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 139 (414)
.++|+++++.+...+| .+..+||.--..+...+. +++++.+++.+.... +-+..+|+.-..++.+.+
T Consensus 46 s~eaL~~t~~~L~~nP--~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 46 DESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp SHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 3689999999999987 677778766555554443 678999999988763 237778888777777877
Q ss_pred C--cchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------
Q 043191 140 R--VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR-IMEAAALFTKLRVFGCELDVFTYNTLINGLCRT-------- 208 (414)
Q Consensus 140 ~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-------- 208 (414)
+ +++++++++.+.+.. +-|..+|+.-...+...|. ++++++.++++.+.. +-|...|+.....+.+.
T Consensus 123 ~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 123 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC----
T ss_pred cccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccccc
Confidence 4 789999999999986 5588889888888888888 699999999999876 45777887766666554
Q ss_pred ------CChHHHHHHHHHHHcCCCCCCccccCc-hhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhhc
Q 043191 209 ------GHTIVALNLFEEMANGNGEFGVVCEPD-AITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRVQ 280 (414)
Q Consensus 209 ------g~~~~a~~~~~~m~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~ 280 (414)
+.++++++.++.... ..|+ ...|+-+-..+.+...... . ..-..+.++++.+.+. +....
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~--------~~P~d~SaW~Y~r~ll~~~~~~~~-~---~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFF--------TDPNDQSAWFYHRWLLGAGSGRCE-L---SVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHH--------HSTTCHHHHHHHHHHHHSSSCGGG-C---CHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchHHHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHhccCccc-c---chHHHHHHHHHHHHHHHHHhhC
Confidence 457889999999887 3454 4445433333332211000 0 0112355677777777 66666
Q ss_pred cccccHHHHHHH-----HHhcCChhHHHHHHHhchhC
Q 043191 281 CLCLNFLCLIDG-----LCKISKLKIARELFQSLPRA 312 (414)
Q Consensus 281 ~~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~~ 312 (414)
|+. .|+.+..+ ....+..+++...+.++.+.
T Consensus 269 pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 269 PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 654 34322221 12346666777777777664
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.17 E-value=7.6e-06 Score=75.53 Aligned_cols=121 Identities=9% Similarity=0.004 Sum_probs=96.8
Q ss_pred cCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 043191 60 SGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMG 139 (414)
Q Consensus 60 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 139 (414)
....+.+.|++++|++.|++..+..+ .+..+|..+..++.+.|++++|++.+++..+.. +-+...|..+..+|...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 34456788999999999999999876 678899999999999999999999999998763 236778899999999999
Q ss_pred CcchHHHHHHHHHHcCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 043191 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKD--LCAESRIMEAAALFT 184 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 184 (414)
++++|.+.|++..+.. +-+...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999998874 3344455555555 888899999999988
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=8.5e-05 Score=54.58 Aligned_cols=94 Identities=13% Similarity=0.025 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-H---hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC---HHhHHH
Q 043191 93 FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD-R---YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD---AVTFTS 165 (414)
Q Consensus 93 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 165 (414)
+..+...+.+.|++++|...|+...+.. |+ . ..+..+..++.+.|++++|...|+...+.. +.+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence 4456667778888888888888877642 32 2 466677778888888888888888887764 223 556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 043191 166 LIKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
+..++.+.|++++|...|+++...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777888888888888888888765
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.16 E-value=2e-05 Score=60.47 Aligned_cols=134 Identities=15% Similarity=0.026 Sum_probs=101.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCCcchHHHHHHHHHHcC----CCC-C
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLF-PD----RYTYNILINCFCKMGRVSHGFVVLGRILRSC----FTP-D 159 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 159 (414)
..++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. -.+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456788888999999999999999987643111 11 2467888889999999999999999876641 111 1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVF----GCE-LDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
...+..+...+...|++++|.+.+++.... +.. ....++..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456778888899999999999999887643 211 1245677888999999999999999998765
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.14 E-value=2.3e-05 Score=57.24 Aligned_cols=96 Identities=9% Similarity=-0.083 Sum_probs=77.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043191 92 SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171 (414)
Q Consensus 92 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 171 (414)
.+..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|+..|++.++.. +-+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45567777888899999999998887652 2267778888888889999999999999888875 446778888888899
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 043191 172 AESRIMEAAALFTKLRVF 189 (414)
Q Consensus 172 ~~g~~~~a~~~~~~m~~~ 189 (414)
+.|++++|+..|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999888754
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.14 E-value=6.4e-06 Score=59.84 Aligned_cols=85 Identities=11% Similarity=-0.052 Sum_probs=43.9
Q ss_pred cCCcchHHHHHHHHHHcC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043191 138 MGRVSHGFVVLGRILRSC--FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVAL 215 (414)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 215 (414)
.|++++|+..|++.++.+ -+.+...+..+..+|.+.|++++|+..|++..+.. +-+..++..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 345555555555555442 12233445555555566666666666666555543 223555555556666666666666
Q ss_pred HHHHHHHc
Q 043191 216 NLFEEMAN 223 (414)
Q Consensus 216 ~~~~~m~~ 223 (414)
..|++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.13 E-value=0.00011 Score=53.95 Aligned_cols=95 Identities=14% Similarity=-0.034 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 043191 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDA---VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD---VFTYNTL 201 (414)
Q Consensus 128 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~l 201 (414)
+..+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|++..... +.+ ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 4446677889999999999999998864 2233 577788889999999999999999998864 223 6778889
Q ss_pred HHHHHhcCChHHHHHHHHHHHcC
Q 043191 202 INGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 202 i~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
..++.+.|++++|...|+++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999873
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.11 E-value=6e-05 Score=58.18 Aligned_cols=64 Identities=6% Similarity=-0.102 Sum_probs=46.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 159 DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 159 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++++|...|+....
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34566677777777777777777777777654 34566777777777777777777777777776
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=0.0004 Score=63.05 Aligned_cols=127 Identities=11% Similarity=-0.065 Sum_probs=91.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC-C---------------HhhHHHHHHHHHhcCCcchHHHHHHHHHHc-CCCCC
Q 043191 97 FGCLAKTKHYDTVLSLFKRLNLTGLFP-D---------------RYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPD 159 (414)
Q Consensus 97 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~---------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 159 (414)
.+.+.+.|++++|++.|..+.+..... + ...+..+...|...|++++|.+.+..+.+. +-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 455678899999999999987653221 1 123677899999999999999999887653 11112
Q ss_pred H----HhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 160 A----VTFTSLIKDLCAESRIMEAAALFTKLRV----FGCELD-VFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 160 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
. .+.+.+-..+...|+.++|.+++++... .+..+. ..++..+...|...|++++|..++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 2 1233333444557899999999887754 232232 46788899999999999999999998765
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=4.8e-05 Score=58.20 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=75.5
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-C
Q 043191 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFT-PD----AVTFTSLIKDLCAESRIMEAAALFTKLRVFG----CEL-D 194 (414)
Q Consensus 125 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~-~ 194 (414)
..++..+...+...|++++|...+++..+..-. .+ ..++..+...+...|++++|.+.+++..... -.+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346777888889999999999999888764211 11 2467888888999999999999998876531 111 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 195 VFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
..++..+...+...|++++|...+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45677888899999999999999988875
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.07 E-value=3.4e-06 Score=77.90 Aligned_cols=125 Identities=8% Similarity=-0.046 Sum_probs=98.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043191 92 SFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171 (414)
Q Consensus 92 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 171 (414)
.+..+...+.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34445556678899999999999988762 2357889999999999999999999999999885 457788999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 043191 172 AESRIMEAAALFTKLRVFGCELDVFTYNTLING--LCRTGHTIVALNLFE 219 (414)
Q Consensus 172 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 219 (414)
+.|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998764 2234455555555 888899999999988
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.05 E-value=1.7e-05 Score=57.48 Aligned_cols=85 Identities=14% Similarity=0.074 Sum_probs=40.6
Q ss_pred cCChhHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 043191 103 TKHYDTVLSLFKRLNLTGL--FPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAA 180 (414)
Q Consensus 103 ~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 180 (414)
.|++++|+..|++..+.+. +-+...+..+..++...|++++|.+.|++.++.. +-+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 3445555555555544321 1123344455555555555555555555555543 223445555555555555555555
Q ss_pred HHHHHHHH
Q 043191 181 ALFTKLRV 188 (414)
Q Consensus 181 ~~~~~m~~ 188 (414)
..|++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.98 E-value=7.8e-05 Score=66.23 Aligned_cols=124 Identities=10% Similarity=-0.011 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC--------------CCCC-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 043191 91 TSFNILFGCLAKTKHYDTVLSLFKRLNLT--------------GLFP-DRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155 (414)
Q Consensus 91 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 155 (414)
..|..+...+.+.|++++|++.|++..+. ...| +..+|..+..+|.+.|++++|++.+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 45778888999999999999999987751 0122 45678888999999999999999999999875
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043191 156 FTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALN 216 (414)
Q Consensus 156 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 216 (414)
+.+...|..+..+|...|++++|++.|++..+.. +.+...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888999999999999999999999988774 3366777777777777777666654
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.97 E-value=2.5e-05 Score=68.56 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H
Q 043191 127 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING-L 205 (414)
Q Consensus 127 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~ 205 (414)
.|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 67788888999999999999999998875 4477888899999999999999999999887542 2234455555444 2
Q ss_pred HhcCChHHHHHHHHHHHcC
Q 043191 206 CRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 206 ~~~g~~~~a~~~~~~m~~~ 224 (414)
...+..+.+..+|..|...
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 3455677788888888763
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.95 E-value=0.00013 Score=56.21 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=81.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhC--------C---------CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLT--------G---------LFPDRYTYNILINCFCKMGRVSHGFVVLGRIL 152 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 152 (414)
...+......+.+.|++++|+..|.+.... . .+-+...|..+..+|.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777788888899999999988887653 0 01134578888899999999999999999998
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043191 153 RSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 153 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
+.. +.+...|..+..+|...|++++|...|++....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 875 557888999999999999999999999998876
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.93 E-value=3.1e-05 Score=71.09 Aligned_cols=142 Identities=7% Similarity=-0.112 Sum_probs=110.5
Q ss_pred hccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCC--------------HhhHHHHHH
Q 043191 263 SFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPN--------------VVTYNILIR 326 (414)
Q Consensus 263 ~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~li~ 326 (414)
..+.+++|...+. .... ......|..+...|.+.|++++|+..|++..+...... ...|..+..
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777 3333 34466788899999999999999999999877432211 578888999
Q ss_pred HHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHH
Q 043191 327 GLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP-DAVTFTSLIKILE 405 (414)
Q Consensus 327 ~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~ 405 (414)
+|.+.|++++|.. .+++..+... -+...|..+..+|...|++++|+..|++.++. .| +...+..+..++.
T Consensus 326 ~~~~~g~~~~A~~------~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 326 CYLKLREYTKAVE------CCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHTTCHHHHHH------HHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHH
T ss_pred HHHHhcCHHHHHH------HHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 9999999999988 8998887642 36888999999999999999999999999985 44 4567777888888
Q ss_pred HcCCcccc
Q 043191 406 INSFFRQV 413 (414)
Q Consensus 406 ~~g~~~~a 413 (414)
+.|+++++
T Consensus 397 ~~~~~~~a 404 (457)
T 1kt0_A 397 KAKEHNER 404 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
No 188
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.90 E-value=0.0061 Score=52.59 Aligned_cols=239 Identities=12% Similarity=0.025 Sum_probs=149.4
Q ss_pred hcCChh-HHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCC----------cchHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043191 102 KTKHYD-TVLSLFKRLNLTGLFPD-RYTYNILINCFCKMGR----------VSHGFVVLGRILRSCFTPDAVTFTSLIKD 169 (414)
Q Consensus 102 ~~~~~~-~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 169 (414)
+.|.+. +|+++++.+... .|+ ..+|+.--.++...+. +++++.+++.+.... +-+..+|+.-...
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 455554 799999999876 454 3445543333333222 678889999998875 4478888887777
Q ss_pred HHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHH
Q 043191 170 LCAES--RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH-TIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGL 246 (414)
Q Consensus 170 ~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~ 246 (414)
+.+.| .+++++++++++.+.. +-|-.+|+.-..++...|. ++++++.++.+.+.. +-|...|+.....+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-------p~N~SAW~~R~~ll 189 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSSWHYRSCLL 189 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHH
Confidence 77777 4899999999999876 5588888888777888888 589999999998854 34555666555444
Q ss_pred HhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHH
Q 043191 247 CKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIR 326 (414)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 326 (414)
.+........ ..+. ...+.++++++.+.......+. |...|+-+-.
T Consensus 190 ~~l~~~~~~~------~~~~---------------------------~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ 235 (331)
T 3dss_A 190 PQLHPQPDSG------PQGR---------------------------LPENVLLKELELVQNAFFTDPN-DQSAWFYHRW 235 (331)
T ss_dssp HHHSCCC------------C---------------------------CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred HHhhhccccc------cccc---------------------------cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3321100000 0000 0013467777787777765444 6666765544
Q ss_pred HHHhc-CCh----hhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHhhhhC
Q 043191 327 GLCND-GQM----DETKHYETVFLLFKRLNSTGLFPDLYTYNILI-----NCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 327 ~~~~~-g~~----~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
.+.+. |.. +....++++++.++++.+. .||. .|..+- .+....|..+++...+.++++.
T Consensus 236 ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 236 LLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 44443 110 0011245555588888875 4553 333221 2222467788899999999873
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=0.00049 Score=51.38 Aligned_cols=111 Identities=9% Similarity=-0.049 Sum_probs=77.7
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCcch
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCK----MGRVSH 143 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~ 143 (414)
.++++|++.|+...+.+. ++.. |...|...+.+++|.++|++..+.| +...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 456778888887777654 3333 6666666667777888888777664 55666667777766 677778
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 043191 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCA----ESRIMEAAALFTKLRVFG 190 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 190 (414)
|.++|++..+.| +...+..|-..|.. .++.++|...|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 888887777765 55666667777776 677777877777777665
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.80 E-value=8.3e-05 Score=68.32 Aligned_cols=125 Identities=7% Similarity=-0.075 Sum_probs=96.3
Q ss_pred HHHhcCChhHHHHHHHHHHhC---CCC---C-CHhhHHHHHHHHHhcCCcchHHHHHHHHHHc-----CC-CC-CHHhHH
Q 043191 99 CLAKTKHYDTVLSLFKRLNLT---GLF---P-DRYTYNILINCFCKMGRVSHGFVVLGRILRS-----CF-TP-DAVTFT 164 (414)
Q Consensus 99 ~~~~~~~~~~a~~~~~~m~~~---g~~---p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 164 (414)
.+...|++++|+.++++..+. -+. | ...+++.|..+|...|++++|..++++.++. |- .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999886532 112 2 2467899999999999999999999987663 21 22 245689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----cCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 165 SLIKDLCAESRIMEAAALFTKLRV-----FGC-EL-DVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 165 ~li~~~~~~g~~~~a~~~~~~m~~-----~g~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.|...|...|++++|+.++++... .|- .| ...+.+.+-.++...+.+.+|+.+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764 231 12 244667777888889999999999999876
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.80 E-value=0.0009 Score=62.95 Aligned_cols=170 Identities=11% Similarity=-0.004 Sum_probs=135.9
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 043191 69 TPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKH----------YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKM 138 (414)
Q Consensus 69 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 138 (414)
..++|++.++.+...+| .+..+|+.--.++.+.++ ++++++.++.+.+... -+..+|+.-.-++.+.
T Consensus 44 ~~eeal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 34789999999999987 778889888777777777 8999999999987642 2777888888888889
Q ss_pred C--CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-------
Q 043191 139 G--RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES-RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT------- 208 (414)
Q Consensus 139 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~------- 208 (414)
+ +++++++.++++.+.. +-+..+|+.-...+.+.| .++++++.++++.+.. +-|..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 9 6699999999999987 558889998888888888 8999999999998775 45778888877776653
Q ss_pred -------CChHHHHHHHHHHHcCCCCCCccccC-chhhHHHHHHHHHhhcC
Q 043191 209 -------GHTIVALNLFEEMANGNGEFGVVCEP-DAITYSTIIDGLCKEAG 251 (414)
Q Consensus 209 -------g~~~~a~~~~~~m~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~ 251 (414)
+.++++++.+++... ..| +...|...-..+...+.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~--------~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF--------TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH--------HCSSCSHHHHHHHHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHh--------hCCCCccHHHHHHHHHhcCCC
Confidence 457899999988887 344 45566665555555444
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.78 E-value=0.00029 Score=53.37 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC-CHHHH----HHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 162 TFTSLIKDLCAESRIMEAAALFTKLRVF-----GCEL-DVFTY----NTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.|..+..++.+.|++++|+..+++..+. .+.| +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777788888888888888888887765 1134 45577 8888889999999999999998876
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.78 E-value=0.00033 Score=53.07 Aligned_cols=95 Identities=13% Similarity=-0.017 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-------------HhhHHHHHHHHHhcCCcchHHHHHHHHHHc---
Q 043191 91 TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD-------------RYTYNILINCFCKMGRVSHGFVVLGRILRS--- 154 (414)
Q Consensus 91 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 154 (414)
..+......+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 34555666677788888888888887654 222 227888888899999999999999888875
Q ss_pred ----CCCCCHHhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 043191 155 ----CFTPDAVTF----TSLIKDLCAESRIMEAAALFTKLRV 188 (414)
Q Consensus 155 ----~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 188 (414)
. +-+...| .....++...|++++|+..|++..+
T Consensus 90 ~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 90 RGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4 2345667 8888899999999999999998865
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.76 E-value=0.00073 Score=50.42 Aligned_cols=112 Identities=12% Similarity=-0.058 Sum_probs=94.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHH
Q 043191 103 TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCA----ESRIME 178 (414)
Q Consensus 103 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 178 (414)
.+++++|.++|++..+.| .|+.. |...|...+.+++|.+.|++..+.| +...+..|-..|.. .++.++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 346889999999999887 33333 6667777778888999999999876 67888888888888 899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHcCC
Q 043191 179 AAALFTKLRVFGCELDVFTYNTLINGLCR----TGHTIVALNLFEEMANGN 225 (414)
Q Consensus 179 a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 225 (414)
|.+.|++..+.| +...+..|...|.. .+++++|...|+...+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999999876 57778888888888 899999999999999877
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.75 E-value=0.00012 Score=67.33 Aligned_cols=124 Identities=9% Similarity=-0.029 Sum_probs=94.8
Q ss_pred CCCCHHhHHHHHHHHHhc-----CCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CC-CHhhHHHHH
Q 043191 66 TSITPNEALCVFDYMLNM-----RPSRP-PVTSFNILFGCLAKTKHYDTVLSLFKRLNLT-----GL-FP-DRYTYNILI 132 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~-----~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p-~~~~~~~li 132 (414)
..|++++|+.+++..... |+..| ...+++.|...|...|++++|..++++..+. |- .| ...+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 568999999999887753 22233 3457899999999999999999999986532 21 23 345789999
Q ss_pred HHHHhcCCcchHHHHHHHHHHc-----CC-CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043191 133 NCFCKMGRVSHGFVVLGRILRS-----CF-TP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
..|...|++++|..++++.++. |- .| ...+.+.+-.++...+.+++|+.+|.++++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887653 32 12 2344566777788889999999999998763
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.68 E-value=4.1e-05 Score=54.57 Aligned_cols=89 Identities=9% Similarity=0.004 Sum_probs=50.1
Q ss_pred HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HHH
Q 043191 125 RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD-------VFT 197 (414)
Q Consensus 125 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~~ 197 (414)
...+..+...+...|++++|.+.|++..+.. +.+...+..+..++.+.|++++|++.|++.... .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 3445555566666666666666666666553 335556666666666666666666666666654 233 334
Q ss_pred HHHHHHHHHhcCChHHHHH
Q 043191 198 YNTLINGLCRTGHTIVALN 216 (414)
Q Consensus 198 ~~~li~~~~~~g~~~~a~~ 216 (414)
+..+..++...|+++.|..
T Consensus 81 ~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHhHhhhHh
Confidence 4444445555554444433
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.67 E-value=0.00062 Score=48.80 Aligned_cols=79 Identities=15% Similarity=0.008 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043191 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222 (414)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 222 (414)
.+++.|++..+.. +.+...+..+...|...|++++|...|++..... +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555543 3345556666666666666666666666665543 2345566666666666666666666666665
Q ss_pred c
Q 043191 223 N 223 (414)
Q Consensus 223 ~ 223 (414)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00047 Score=48.85 Aligned_cols=88 Identities=13% Similarity=0.036 Sum_probs=73.8
Q ss_pred CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC---
Q 043191 317 NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD--- 393 (414)
Q Consensus 317 ~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--- 393 (414)
+...+..+...+...|++++|.. .+++..+.. +.+...|..+..+|...|++++|+..+++.++. .|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~------~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 73 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVH------CYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEH 73 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHH------HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHH------HHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccH
Confidence 55678888889999999999988 899888753 236788999999999999999999999999985 454
Q ss_pred ----HHHHHHHHHHHHHcCCcccc
Q 043191 394 ----AVTFTSLIKILEINSFFRQV 413 (414)
Q Consensus 394 ----~~~~~~li~~~~~~g~~~~a 413 (414)
...+..+..++...|++++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 74 VAIRSKLQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhh
Confidence 66778888888888888776
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.65 E-value=0.00062 Score=60.43 Aligned_cols=97 Identities=10% Similarity=-0.080 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHc---------------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043191 126 YTYNILINCFCKMGRVSHGFVVLGRILRS---------------CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190 (414)
Q Consensus 126 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 190 (414)
..+..+...+.+.|++++|++.|++.++. --+.+..+|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34677788899999999999999998861 112345778889999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 191 CELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 191 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+.+...|..+..+|...|++++|...|++..+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34678899999999999999999999999988
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.64 E-value=0.0003 Score=50.53 Aligned_cols=80 Identities=11% Similarity=-0.029 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHH
Q 043191 72 EALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRI 151 (414)
Q Consensus 72 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 151 (414)
.|++.|+......+ .+...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGT--DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56777777777665 566777777788888888888888888776552 224566777777777778888887777776
Q ss_pred HHc
Q 043191 152 LRS 154 (414)
Q Consensus 152 ~~~ 154 (414)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 201
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.61 E-value=0.0003 Score=61.66 Aligned_cols=62 Identities=13% Similarity=-0.063 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
.|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888999999999999999999998874 447889999999999999999999999999873
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.56 E-value=0.0012 Score=44.73 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043191 128 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 128 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...|++..+.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3334444444444444444444444432 223344444444555555555555555554443
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=0.00037 Score=52.72 Aligned_cols=99 Identities=17% Similarity=0.067 Sum_probs=65.8
Q ss_pred CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 043191 140 RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR----------IMEAAALFTKLRVFGCELDVFTYNTLINGLCRT- 208 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~- 208 (414)
.+++|.+.++...+.. +-+...|..+-.++.+.++ +++|+..|++..+.. +-+..+|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence 3444455555444443 3344444444444444433 568888888888764 33567888888888776
Q ss_pred ----------CChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHh
Q 043191 209 ----------GHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248 (414)
Q Consensus 209 ----------g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~ 248 (414)
|++++|++.|++..+ +.|+...|...+...-+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~--------l~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD--------EQPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHT
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHh
Confidence 489999999999998 77888887776665543
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.49 E-value=0.008 Score=56.52 Aligned_cols=189 Identities=12% Similarity=-0.048 Sum_probs=133.0
Q ss_pred cCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCC----------cchHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 043191 103 TKHYDTVLSLFKRLNLTGLFP-DRYTYNILINCFCKMGR----------VSHGFVVLGRILRSCFTPDAVTFTSLIKDLC 171 (414)
Q Consensus 103 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 171 (414)
....++|++.++++... .| +..+|+.--.++...++ ++++++.++.+.+.. +-+..+|+.-...+.
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33456789999998876 34 45567766666666666 899999999999886 447888988888888
Q ss_pred hcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHh
Q 043191 172 AES--RIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTG-HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCK 248 (414)
Q Consensus 172 ~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~ 248 (414)
+.| +++++++.++++.+.. +-|-.+|+.-..++.+.| .++++++.++++.+.. .-+...|+.....+.+
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-------p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-------FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-------CCCHHHHHHHHHHHHH
T ss_pred HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-------CCCccHHHHHHHHHHh
Confidence 999 7799999999999886 458889998888888888 8999999999998754 3455666665555444
Q ss_pred hcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHH
Q 043191 249 EAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGL 328 (414)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 328 (414)
.+....... .+. ...+.++++++.+++....... |...|.-+-..+
T Consensus 191 l~~~~~~~~------~~~---------------------------~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll 236 (567)
T 1dce_A 191 LHPQPDSGP------QGR---------------------------LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLL 236 (567)
T ss_dssp HSCCCCSSS------CCS---------------------------SCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHH
T ss_pred hcccccccc------ccc---------------------------ccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHH
Confidence 211100000 000 0014567888888877765443 677787777777
Q ss_pred HhcCChhh
Q 043191 329 CNDGQMDE 336 (414)
Q Consensus 329 ~~~g~~~~ 336 (414)
.+.++.++
T Consensus 237 ~~~~~~~~ 244 (567)
T 1dce_A 237 GRAEPHDV 244 (567)
T ss_dssp SCCCCCSC
T ss_pred hcCCCccc
Confidence 77666443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.46 E-value=0.0004 Score=52.49 Aligned_cols=90 Identities=10% Similarity=0.139 Sum_probs=63.7
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChh----------HHHHHHHHHHhCCCCC-CHhhHHHHHHHHH
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYD----------TVLSLFKRLNLTGLFP-DRYTYNILINCFC 136 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~----------~a~~~~~~m~~~g~~p-~~~~~~~li~~~~ 136 (414)
+++++|++.++...+..| .+...|+.+..++...++++ +|+..|++..+. .| +..+|..+..+|.
T Consensus 16 ~~feeA~~~~~~Ai~l~P--~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHH
Confidence 456889999999999887 78888988888888887754 777777777665 33 4566777777776
Q ss_pred hcC-----------CcchHHHHHHHHHHcCCCCCHHhH
Q 043191 137 KMG-----------RVSHGFVVLGRILRSCFTPDAVTF 163 (414)
Q Consensus 137 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~ 163 (414)
..| ++++|++.|++.++. .|+...|
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 654 566666666666554 3444333
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.41 E-value=0.0017 Score=43.92 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=65.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043191 89 PVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168 (414)
Q Consensus 89 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 168 (414)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45678888899999999999999999987653 2367788889999999999999999999998874 345666666666
Q ss_pred HHHhc
Q 043191 169 DLCAE 173 (414)
Q Consensus 169 ~~~~~ 173 (414)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65543
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.38 E-value=0.0012 Score=45.98 Aligned_cols=63 Identities=22% Similarity=0.094 Sum_probs=30.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 160 AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
...+..+...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444455555555555555555544442 22334445555555555555555555554443
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.15 E-value=0.028 Score=48.86 Aligned_cols=143 Identities=9% Similarity=-0.005 Sum_probs=100.2
Q ss_pred CCCHhhHHHHHHHHHh--cC---ChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHh---cCCcc--hHH---HHHHHHH
Q 043191 87 RPPVTSFNILFGCLAK--TK---HYDTVLSLFKRLNLTGLFPD-RYTYNILINCFCK---MGRVS--HGF---VVLGRIL 152 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~--~~---~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~---~~~~~--~a~---~~~~~~~ 152 (414)
+.+..+|...+++... .+ +..+|..+|++..+. .|+ ...|..+.-+|.- .+... ... ..++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4788889888877643 23 357899999999876 564 3445444333321 11111 111 1222111
Q ss_pred H-cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCcc
Q 043191 153 R-SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV 231 (414)
Q Consensus 153 ~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 231 (414)
. ...+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr-------- 338 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN-------- 338 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------
Confidence 1 1236678888888888888899999999999999985 7888888889999999999999999999988
Q ss_pred ccCchhhHHH
Q 043191 232 CEPDAITYST 241 (414)
Q Consensus 232 ~~p~~~~~~~ 241 (414)
+.|...+|..
T Consensus 339 L~P~~~t~~~ 348 (372)
T 3ly7_A 339 LRPGANTLYW 348 (372)
T ss_dssp HSCSHHHHHH
T ss_pred cCCCcChHHH
Confidence 6677777654
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.06 E-value=0.0036 Score=43.48 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043191 126 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187 (414)
Q Consensus 126 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 187 (414)
..+..+..++...|++++|+..|++.++.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444455555555554444443 2233444444455555555555555554443
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.00 E-value=0.038 Score=54.47 Aligned_cols=101 Identities=7% Similarity=0.032 Sum_probs=69.1
Q ss_pred HHHhcCChhHHHH-HHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 043191 99 CLAKTKHYDTVLS-LFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIM 177 (414)
Q Consensus 99 ~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 177 (414)
.....+++++|.+ ++..+ ++......++..+.+.|..+.|+++.+.-. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 3345778888776 44211 112233667777888888888876653211 1134456789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 178 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.+
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 998886543 3678899999999999999999999988764
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.79 E-value=0.033 Score=48.47 Aligned_cols=127 Identities=10% Similarity=-0.064 Sum_probs=88.9
Q ss_pred CCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh---cC-Ch-hHHH---HHHHHHHhC-CCCCCHhhHHHHHHHHHhc
Q 043191 68 ITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAK---TK-HY-DTVL---SLFKRLNLT-GLFPDRYTYNILINCFCKM 138 (414)
Q Consensus 68 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~-~~-~~a~---~~~~~m~~~-g~~p~~~~~~~li~~~~~~ 138 (414)
....+|+.+|++..+..| .....|..+..++.- .+ .. .... ..++..... ....+..+|..+...+...
T Consensus 213 ~~~~~A~~l~e~Al~lDP--~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSP--EFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 345899999999999887 455555544444431 11 11 1111 112211111 1245777888877777778
Q ss_pred CCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043191 139 GRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT 200 (414)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 200 (414)
|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++.... .|...+|..
T Consensus 291 gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 99999999999999985 78888888888899999999999999998877 577776653
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.79 E-value=0.0054 Score=55.38 Aligned_cols=98 Identities=10% Similarity=0.003 Sum_probs=71.4
Q ss_pred HHHHHHhcCChhHHHHHHHhchhCC---CCCC----HhhHHHHHHHHHhcCChhhhhh-hhhHHHHHHHHHhCCCCCC-H
Q 043191 289 LIDGLCKISKLKIARELFQSLPRAG---LMPN----VVTYNILIRGLCNDGQMDETKH-YETVFLLFKRLNSTGLFPD-L 359 (414)
Q Consensus 289 li~~~~~~~~~~~a~~~~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~a~~-~~~a~~~~~~m~~~~~~p~-~ 359 (414)
.+..+.+.|++++|+.++++..+.. ..|+ ..+++.+..+|...|++++|+. +++++.+++...-.. .|+ .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a 371 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-HPVRG 371 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-CHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-ChHHH
Confidence 4556678899999999999876431 2222 4578899999999999999988 233333333333222 233 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 360 YTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 360 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
.+++.|...|...|++++|..++++.++
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999998764
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.76 E-value=0.0038 Score=56.32 Aligned_cols=87 Identities=7% Similarity=-0.136 Sum_probs=69.0
Q ss_pred hcCCcchHHHHHHHHHHc---CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 043191 137 KMGRVSHGFVVLGRILRS---CFTP----DAVTFTSLIKDLCAESRIMEAAALFTKLRVF-----G-CELD-VFTYNTLI 202 (414)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~~~-~~~~~~li 202 (414)
..|++++|+.++++.++. -+.| ...+++.|..+|...|++++|+.++++.... | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356889999999988763 1222 2367899999999999999999999987652 3 1233 46799999
Q ss_pred HHHHhcCChHHHHHHHHHHHc
Q 043191 203 NGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 203 ~~~~~~g~~~~a~~~~~~m~~ 223 (414)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.75 E-value=0.0027 Score=57.28 Aligned_cols=92 Identities=3% Similarity=-0.077 Sum_probs=66.9
Q ss_pred hcCChhHHHHHHHhchhC---CCCCC----HhhHHHHHHHHHhcCChhhhhh-hhhHHHHHHHHHhCCCCCC-HHHHHHH
Q 043191 295 KISKLKIARELFQSLPRA---GLMPN----VVTYNILIRGLCNDGQMDETKH-YETVFLLFKRLNSTGLFPD-LYTYNIL 365 (414)
Q Consensus 295 ~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~a~~-~~~a~~~~~~m~~~~~~p~-~~~~~~l 365 (414)
..|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|.. ++.++.+++...-.. .|+ ..+++.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHH
Confidence 457899999999886442 12222 4678999999999999999988 233333443333222 333 4579999
Q ss_pred HHHHHhcCCHHHHHHHHHhhhh
Q 043191 366 INCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 366 i~~~~~~g~~~~a~~~~~~m~~ 387 (414)
...|...|++++|..++++.++
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.75 E-value=0.066 Score=52.76 Aligned_cols=125 Identities=13% Similarity=0.064 Sum_probs=88.2
Q ss_pred CCCHHhHHH-HHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 67 SITPNEALC-VFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 67 ~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
.+++++|.+ ++..+ ++......++..+.+.|.+++|+++.+.- ..-+......|+++.|.
T Consensus 612 ~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 612 RGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLAR 672 (814)
T ss_dssp TTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHH
T ss_pred hCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHH
Confidence 467777766 44222 21233478888889999999998776321 11134456789999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...|...|+.+...++-+.....|
T Consensus 673 ~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 673 DLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 886443 3778999999999999999999999998863 3445556666788887777766666554
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.73 E-value=0.0078 Score=54.34 Aligned_cols=93 Identities=9% Similarity=-0.110 Sum_probs=73.2
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcC---CCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HH
Q 043191 131 LINCFCKMGRVSHGFVVLGRILRSC---FTP----DAVTFTSLIKDLCAESRIMEAAALFTKLRVF-----G-CELD-VF 196 (414)
Q Consensus 131 li~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~~~-~~ 196 (414)
.+..+.+.|++++|++++++.++.. +.| ...+++.|..+|...|++++|+.++++.... | -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667899999999999998641 222 2457899999999999999999999987652 2 1233 56
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 197 TYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 197 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 799999999999999999999988764
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.68 E-value=0.1 Score=37.69 Aligned_cols=149 Identities=11% Similarity=0.056 Sum_probs=106.9
Q ss_pred hHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhH
Q 043191 162 TFTSLIKD--LCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITY 239 (414)
Q Consensus 162 ~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~ 239 (414)
+...|+.+ ..-.|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-..-+ +.+- .-.
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD-----is~C-~Nl 77 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD-----LDKC-QNL 77 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC-----GGGC-SCT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcC-----cHhh-hcH
Confidence 33445544 45578889999999888764 3677788888777778888888888887765321 1111 123
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHh
Q 043191 240 STIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVV 319 (414)
Q Consensus 240 ~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 319 (414)
-.++.+|.+.+. +...+...++.....|+-++-.+++.++.. +..|++.
T Consensus 78 KrVi~C~~~~n~------------------------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~ 126 (172)
T 1wy6_A 78 KSVVECGVINNT------------------------------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSAS 126 (172)
T ss_dssp HHHHHHHHHTTC------------------------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHH
T ss_pred HHHHHHHHHhcc------------------------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChH
Confidence 345566655432 334456678888899999999999998544 3567888
Q ss_pred hHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCC
Q 043191 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLF 356 (414)
Q Consensus 320 ~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~ 356 (414)
..-.+..+|.+.|+..+|.+ ++.+.-+.|++
T Consensus 127 ~l~kia~Ay~Klg~~r~a~e------Ll~~AC~kG~k 157 (172)
T 1wy6_A 127 ILVAIANALRRVGDERDATT------LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHH------HHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcchhhHHH------HHHHHHHhhhH
Confidence 88899999999999999999 99999888875
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.24 E-value=0.099 Score=35.49 Aligned_cols=67 Identities=10% Similarity=0.045 Sum_probs=42.2
Q ss_pred CCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 158 PDAVTFTSLIKDLCAESR---IMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 158 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
.+...+..+..++...++ .++|..+|++..... +-+......+...+.+.|++++|...|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455555555555543333 567777777766654 3355666666677777777777777777777643
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.19 E-value=0.055 Score=36.91 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=32.6
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043191 132 INCFCKMGRVSHGFVVLGRILRSCFTPDAV-TFTSLIKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 132 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
...+.+.|++++|.+.|++..+.. +.+.. .+..+..+|...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334455566666666666665543 22444 5555566666666666666666666554
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.11 E-value=0.054 Score=40.43 Aligned_cols=85 Identities=12% Similarity=0.018 Sum_probs=60.1
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCc
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTK---HYDTVLSLFKRLNLTGLFP--DRYTYNILINCFCKMGRV 141 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~ 141 (414)
......+.+-|......++ ++..+...+..++++.+ ++++++.+|++..+.. .| +...+..+.-+|.+.+++
T Consensus 11 ~~~l~~~~~~y~~e~~~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCH
Confidence 3444566666766666554 67777777778888877 5668888888877653 24 345555566777888888
Q ss_pred chHHHHHHHHHHc
Q 043191 142 SHGFVVLGRILRS 154 (414)
Q Consensus 142 ~~a~~~~~~~~~~ 154 (414)
++|.+.++.+++.
T Consensus 88 ~~A~~y~~~lL~i 100 (152)
T 1pc2_A 88 EKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 8888888888876
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.11 E-value=0.11 Score=38.83 Aligned_cols=78 Identities=14% Similarity=-0.072 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHH
Q 043191 144 GFVVLGRILRSCFTPDAVTFTSLIKDLCAES---RIMEAAALFTKLRVFGCEL--DVFTYNTLINGLCRTGHTIVALNLF 218 (414)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~ 218 (414)
+.+-|....+.| .++..+.-.+..++++++ +.++++.+|+++.+.. .| ....+-.+.-+|.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 344444444444 345566555666666666 4556666666666553 23 2333444455556667777777777
Q ss_pred HHHHc
Q 043191 219 EEMAN 223 (414)
Q Consensus 219 ~~m~~ 223 (414)
+.+.+
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76666
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.05 E-value=0.032 Score=38.15 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHcC
Q 043191 166 LIKDLCAESRIMEAAALFTKLRVFGCELDVF-TYNTLINGLCRTGHTIVALNLFEEMANG 224 (414)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 224 (414)
....+.+.|++++|...|++..+.. +.+.. .|..+..+|...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4556788999999999999998874 34567 8999999999999999999999999884
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.13 Score=39.42 Aligned_cols=126 Identities=10% Similarity=0.039 Sum_probs=74.5
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 66 TSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
..|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.+.-.
T Consensus 17 ~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred hcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 347778887777665 4566788888888888888888887776642 344555566666665555
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043191 146 VVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 222 (414)
++-+.....| -++.....+.-.|+++++.++|.+... .|... ......|..+.|.++.+++.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 4444444443 234445556667777777777754321 11111 11122455666777766654
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.39 Score=36.82 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=81.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 043191 97 FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRI 176 (414)
Q Consensus 97 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 176 (414)
.....+.|+++.|.++.+.+ -+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34556799999999998876 2678999999999999999999999988653 35566677788988
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043191 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222 (414)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 222 (414)
+...++-+.....|- ++.....+.-.|+++++.++|.+..
T Consensus 77 e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 887777666555541 4555666777899999999986654
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.69 E-value=0.088 Score=36.57 Aligned_cols=67 Identities=7% Similarity=-0.008 Sum_probs=44.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTG------LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS 154 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 154 (414)
-+...+..|...+.+.+++..|..+|+...+.- -.+....+..+..++.+.|+++.|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345556677777888888888888887765421 1224556666777777777777777777776654
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.64 E-value=0.097 Score=35.52 Aligned_cols=65 Identities=14% Similarity=-0.011 Sum_probs=27.8
Q ss_pred CHhhHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHc
Q 043191 89 PVTSFNILFGCLAKTKH---YDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS 154 (414)
Q Consensus 89 ~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 154 (414)
+...+..+..++...++ .++|..+|++..+.. +-+......+...+.+.|++++|+..|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444432222 344555554444331 113334444444444455555555555554443
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.60 E-value=0.22 Score=34.48 Aligned_cols=63 Identities=14% Similarity=-0.020 Sum_probs=31.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 161 VTFTSLIKDLCAESRIMEAAALFTKLRVFG------CELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 161 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.-+-.|...+.+.|+++.|...|+...+.- -.....++..+..+|.+.|+++.|...+++..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444445555555555555554443310 012344555555555556666666665555554
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.97 E-value=0.35 Score=40.40 Aligned_cols=111 Identities=11% Similarity=0.096 Sum_probs=80.7
Q ss_pred CHhhHHHHHHHH-Hhc--CC------hhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhc-----CCcchHHHHHHHH
Q 043191 89 PVTSFNILFGCL-AKT--KH------YDTVLSLFKRLNLTGLFPD---RYTYNILINCFCKM-----GRVSHGFVVLGRI 151 (414)
Q Consensus 89 ~~~~~~~li~~~-~~~--~~------~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----~~~~~a~~~~~~~ 151 (414)
....|..++.+- +.. |. ...|..++++..+. .|+ -..|..+...|.+. |+.++|.+.|++.
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 344566555533 332 43 34567777777665 455 56788999999984 9999999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 043191 152 LRSCFTPDAVTFTSLIKDLCAE-SRIMEAAALFTKLRVFGCE--LDVFTYNTL 201 (414)
Q Consensus 152 ~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~--~~~~~~~~l 201 (414)
++.+..-+..++......+++. |+.+++.+.+++....... |+....+.+
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9975333578888888999885 9999999999999987655 665555444
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.80 E-value=0.18 Score=42.18 Aligned_cols=105 Identities=16% Similarity=0.095 Sum_probs=82.5
Q ss_pred CCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 043191 62 EGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAK-----TKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFC 136 (414)
Q Consensus 62 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 136 (414)
.++-.-+....|..++++..+..+...+-.+|..+...|.+ .|+.++|.+.|++..+.+-.-+..++......++
T Consensus 171 gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 171 LGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC 250 (301)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 44556667789999999999988622367789999999999 4999999999999987632224777888888888
Q ss_pred hc-CCcchHHHHHHHHHHcCCC--CCHHhHHHH
Q 043191 137 KM-GRVSHGFVVLGRILRSCFT--PDAVTFTSL 166 (414)
Q Consensus 137 ~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 166 (414)
+. |+.+++.+.+++.+..... |+....|.+
T Consensus 251 ~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 251 IPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp TTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 84 9999999999999998665 665544443
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.34 E-value=0.47 Score=34.34 Aligned_cols=84 Identities=14% Similarity=0.047 Sum_probs=52.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 043191 102 KTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181 (414)
Q Consensus 102 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 181 (414)
.+|+...+...+-.+- -+...+...+......|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+
T Consensus 73 ~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp GCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHH
Confidence 3455555555554432 24455566666677777777777777665332 35666666777777777777777777
Q ss_pred HHHHHHHcCC
Q 043191 182 LFTKLRVFGC 191 (414)
Q Consensus 182 ~~~~m~~~g~ 191 (414)
++.+.-+.|+
T Consensus 147 Ll~~AC~kG~ 156 (172)
T 1wy6_A 147 LLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhhh
Confidence 7777776664
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.20 E-value=4.8 Score=39.82 Aligned_cols=313 Identities=11% Similarity=-0.033 Sum_probs=160.4
Q ss_pred CCCCCCCHHhHHHHHHHHHhcC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--C-----CCHhhHHHHHHH
Q 043191 63 GDITSITPNEALCVFDYMLNMR-PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGL--F-----PDRYTYNILINC 134 (414)
Q Consensus 63 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~-----p~~~~~~~li~~ 134 (414)
|++..|+.++++.+++...... ...+.+..=..+.-+....|..+++..++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4567788888888887765422 1012223333444455666666677777776553210 0 111111222222
Q ss_pred HHhcCCc-chHHHHHHHHHHcCCCCCHHhHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcC
Q 043191 135 FCKMGRV-SHGFVVLGRILRSCFTPDAVTFTS--LIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNT--LINGLCRTG 209 (414)
Q Consensus 135 ~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g 209 (414)
.+-.|.- +++.+.+..++... ........+ |-..++-.|+-+-...++..+.+.. +..+... +.-++.-.|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 2223322 35556666655532 111111222 2223445677777777777766532 3333333 334445778
Q ss_pred ChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHhhccchhhHhhhhh-hhhh-ccccccHH
Q 043191 210 HTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMASFSALNKMAFYFP-LVRV-QCLCLNFL 287 (414)
Q Consensus 210 ~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~-~~~~~~~~ 287 (414)
+.+.+..+++.+.... .|....-..+.-+++..| .|+......++. .... ..++....
T Consensus 539 ~~e~~~~li~~L~~~~-------dp~vRygaa~alglAyaG-------------TGn~~aIq~LL~~~~~d~~d~VRraA 598 (963)
T 4ady_A 539 RQELADDLITKMLASD-------ESLLRYGGAFTIALAYAG-------------TGNNSAVKRLLHVAVSDSNDDVRRAA 598 (963)
T ss_dssp CGGGGHHHHHHHHHCS-------CHHHHHHHHHHHHHHTTT-------------SCCHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred ChHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHhccCCcHHHHHHH
Confidence 8888988888887643 333333333444444433 355554444555 3322 12222223
Q ss_pred HHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCCh-hhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 043191 288 CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQM-DETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366 (414)
Q Consensus 288 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li 366 (414)
.+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++.. ++..+.. .+|..+-...+
T Consensus 599 ViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid------~L~~L~~---D~d~~Vrq~Ai 668 (963)
T 4ady_A 599 VIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAID------VLDPLTK---DPVDFVRQAAM 668 (963)
T ss_dssp HHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHH------HHHHHHT---CSSHHHHHHHH
T ss_pred HHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHH------HHHHHcc---CCCHHHHHHHH
Confidence 33334555677777888887776653 45555555555566666654 34445 7777764 34555544444
Q ss_pred HHHHhcC---------CHHHHHHHHHhhhh-CCCCCCHHHHHHHHHHHHHcCC
Q 043191 367 NCFCKIG---------RVSSGFVIFGRILP-SCFTPDAVTFTSLIKILEINSF 409 (414)
Q Consensus 367 ~~~~~~g---------~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~ 409 (414)
.++...| ++...++.+..... +.-.++...-..+..+....|.
T Consensus 669 ~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 669 IALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 4444333 33334443333333 2334556666777777777664
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.54 E-value=0.35 Score=34.68 Aligned_cols=93 Identities=16% Similarity=0.085 Sum_probs=65.2
Q ss_pred HhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCC--CHHHHHHHHHHHHh
Q 043191 294 CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFP--DLYTYNILINCFCK 371 (414)
Q Consensus 294 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~ 371 (414)
.....+..+.+-|.+....|. ++..+--.+..++.+..+..... .++.+++.+...+ .| .....-.|.-++.+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~---~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIR---KGIVLLEELLPKG-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHH---HHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence 333455566666766655554 57777777788888888777632 2555888888764 23 34455666778999
Q ss_pred cCCHHHHHHHHHhhhhCCCCCC
Q 043191 372 IGRVSSGFVIFGRILPSCFTPD 393 (414)
Q Consensus 372 ~g~~~~a~~~~~~m~~~g~~p~ 393 (414)
.|++++|.+.++.+++ +.|+
T Consensus 87 lg~Y~~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp TTCHHHHHHHHHHHHH--HCTT
T ss_pred hhhHHHHHHHHHHHHH--hCCC
Confidence 9999999999999998 4664
No 233
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.24 E-value=0.7 Score=31.35 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=48.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Q 043191 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404 (414)
Q Consensus 346 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 404 (414)
-++.+....+.|++....+.+++|.+.+++..|+++|+-+..+ +.+...+|..+++-+
T Consensus 32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 7777888899999999999999999999999999999988765 344455677776643
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.92 E-value=0.71 Score=34.12 Aligned_cols=115 Identities=13% Similarity=0.059 Sum_probs=75.8
Q ss_pred cccccHHHHHHHHHhcCCh------hHHHHHHHhchhCCCCCCHh----hHHHHHH---HHHhcCChhhhhhhhhHHHHH
Q 043191 281 CLCLNFLCLIDGLCKISKL------KIARELFQSLPRAGLMPNVV----TYNILIR---GLCNDGQMDETKHYETVFLLF 347 (414)
Q Consensus 281 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~----~~~~li~---~~~~~g~~~~a~~~~~a~~~~ 347 (414)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|.-+-- .+...++.++|.+ +|
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~------vy 83 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARD------YF 83 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHH------HH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHH------HH
Confidence 3455566666666666888 7888888877654 444421 1211111 1233478888888 99
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Q 043191 348 KRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404 (414)
Q Consensus 348 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 404 (414)
+.+.+..-+- ...|-...+.-.+.|+++.|.+++.+.+..+.+| ...+.+.|+-+
T Consensus 84 ~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 84 QMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp HHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred HHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 9997653333 7777777777789999999999999999987664 44445544443
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.88 E-value=0.15 Score=45.19 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHH-----cCCCCCHHhHHH
Q 043191 91 TSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR-----SCFTPDAVTFTS 165 (414)
Q Consensus 91 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 165 (414)
.+...++..+...|++++|+..+..+.... +-+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 456778888899999999999999887652 34788999999999999999999999988755 499998876553
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.65 E-value=1.2 Score=31.90 Aligned_cols=80 Identities=13% Similarity=-0.112 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHH
Q 043191 142 SHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIME---AAALFTKLRVFGCEL--DVFTYNTLINGLCRTGHTIVALN 216 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~ 216 (414)
..+.+-|......| .++..+--.+..+++++.+... ++.+++.+...+ .| .....-.|.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444454444444 3566665566666666665544 666676666543 12 22233345556677777777777
Q ss_pred HHHHHHc
Q 043191 217 LFEEMAN 223 (414)
Q Consensus 217 ~~~~m~~ 223 (414)
.++.+.+
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777776
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.49 E-value=2.4 Score=31.34 Aligned_cols=114 Identities=11% Similarity=0.074 Sum_probs=76.4
Q ss_pred CCCHhhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHhh----HHHHHH---HHHhcCCcchHHHHHHHHHH
Q 043191 87 RPPVTSFNILFGCLAKTKHY------DTVLSLFKRLNLTGLFPDRYT----YNILIN---CFCKMGRVSHGFVVLGRILR 153 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~~----~~~li~---~~~~~~~~~~a~~~~~~~~~ 153 (414)
..|..+|-..+...-+.|++ ++..++|++.... ++|+... |-.+-- .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35667777777777777777 7778888877654 4554311 211111 12344789999999999977
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043191 154 SCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203 (414)
Q Consensus 154 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 203 (414)
.+-.. ...|-.....-.+.|++..|.+++.+....+..| .....+.++
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 63233 7777777777888999999999999998877443 444444443
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.40 E-value=1.6 Score=42.13 Aligned_cols=126 Identities=16% Similarity=0.081 Sum_probs=80.4
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHhcC-CcchHHHHHHHHHHc------CCCC-CH--
Q 043191 94 NILFGCLAKTKH-YDTVLSLFKRLNLTGLFPDRYTYN--ILINCFCKMG-RVSHGFVVLGRILRS------CFTP-DA-- 160 (414)
Q Consensus 94 ~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~-- 160 (414)
..++..+...++ ++.|+.+|+++.+. .|...++. .++..+...+ +--+|.+++.+.++. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344555555556 57899999999876 45433332 2333332322 122345555444321 1111 11
Q ss_pred --------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043191 161 --------VTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMA 222 (414)
Q Consensus 161 --------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 222 (414)
...+.=...|...|+++.|+++-++....- +-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223455778999999999999988763 3457899999999999999999999999874
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.35 E-value=6.1 Score=35.62 Aligned_cols=154 Identities=14% Similarity=0.047 Sum_probs=95.2
Q ss_pred CCCHHhHHHHHHHHHhcC----CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHhh--HHHHHHHHHhcC
Q 043191 67 SITPNEALCVFDYMLNMR----PSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNL-TGLFPDRYT--YNILINCFCKMG 139 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~--~~~li~~~~~~~ 139 (414)
.|+++.|++.+-.+.+.. ....+......++..|...++++...+.+..+.+ +|..+...+ ...++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 367788888776665421 1134566788899999999999999888777653 343332222 222333332333
Q ss_pred CcchHHHHHHHHHHc------C-CCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHH
Q 043191 140 RVSHGFVVLGRILRS------C-FTP---DAVTFTSLIKDLCAESRIMEAAALFTKLRVF--GCELD---VFTYNTLING 204 (414)
Q Consensus 140 ~~~~a~~~~~~~~~~------~-~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~ 204 (414)
..+.. ........ | +-. .......|...|...|++.+|.+++.++... |.-.. ...|..-++.
T Consensus 109 ~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 32221 11122221 1 111 1233456788899999999999999988642 21111 3467778889
Q ss_pred HHhcCChHHHHHHHHHHH
Q 043191 205 LCRTGHTIVALNLFEEMA 222 (414)
Q Consensus 205 ~~~~g~~~~a~~~~~~m~ 222 (414)
|...+++..|..++..+.
T Consensus 187 ~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 999999999999988875
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.06 E-value=0.84 Score=40.45 Aligned_cols=111 Identities=12% Similarity=0.065 Sum_probs=76.0
Q ss_pred CHhhHHHHHHHHH---hcCChhHHHHHHHHHHhC--CC-CCCH------------------hhHHHHHHHHHhcCCcchH
Q 043191 89 PVTSFNILFGCLA---KTKHYDTVLSLFKRLNLT--GL-FPDR------------------YTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 89 ~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~--g~-~p~~------------------~~~~~li~~~~~~~~~~~a 144 (414)
|...|..++.... ..|+.+.|.+.+++.... |- -++. .+...++.++...|++.++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3444555544332 357788888888776543 21 1111 1122345566778999999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRV-----FGCELDVFTYNT 200 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~ 200 (414)
...+..+.... +.+...|..+|.++.+.|+..+|++.|+++.. .|+.|+..+-..
T Consensus 191 ~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 191 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 98888887764 66888999999999999999999999988754 588888765443
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.62 E-value=5 Score=41.23 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=99.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCC----------------
Q 043191 93 FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCF---------------- 156 (414)
Q Consensus 93 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------------- 156 (414)
...++..+.+.+.++.+.++...... +...--.+..++...|++++|.+.|.+... |+
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccc
Confidence 34566677778888777776544332 333334466778888999999988865421 11
Q ss_pred -------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHcCC
Q 043191 157 -------TPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD----VFTYNTLINGLCRTGHTIVALNLFEEMANGN 225 (414)
Q Consensus 157 -------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 225 (414)
..-..-|..++..+.+.|.++.+.++-....+..-+-+ ...|..+.+++...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 11224578888899999999999888776665432222 2268889999999999999999998887643
Q ss_pred CCCCccccCchhhHHHHHHHHHhhcC
Q 043191 226 GEFGVVCEPDAITYSTIIDGLCKEAG 251 (414)
Q Consensus 226 ~~~~~~~~p~~~~~~~li~~~~~~~~ 251 (414)
--......++...|..+.
T Consensus 969 --------~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 969 --------LKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp --------SCHHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHHHHhCCC
Confidence 234566777787777654
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.48 E-value=0.0045 Score=55.30 Aligned_cols=236 Identities=10% Similarity=-0.009 Sum_probs=147.8
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (414)
..+..|..|..+..+.++..+|++.|-+. -|...|..+|.+..+.|.++.-...+....+. ..++..=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHH
Confidence 34456788888888888888887766322 15566788888888888888888777655544 23445556788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCC---------Cc-----ccc
Q 043191 168 KDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF---------GV-----VCE 233 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---------~~-----~~~ 233 (414)
-+|++.++..+..+++. .||..-...+..-|...|.++.|.-+|..+..-.+-. +. .-.
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888887766544432 2444444556666666666666666665543322100 00 013
Q ss_pred CchhhHHHHHHHHHhhcCCCchhHH--HHHh-------------hccchhhHhhhhh-hhhh-ccccccHHHHHHHHHhc
Q 043191 234 PDAITYSTIIDGLCKEAGSANFLGF--SCMA-------------SFSALNKMAFYFP-LVRV-QCLCLNFLCLIDGLCKI 296 (414)
Q Consensus 234 p~~~~~~~li~~~~~~~~~~~~~~~--~~~~-------------~~~~~~~a~~~~~-~~~~-~~~~~~~~~li~~~~~~ 296 (414)
-+..||-.+-.+|...+...-+... ..++ ..|-+++...+++ -.+. +.....|+-|.-.|++-
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 4678999999999988773332222 2222 6677777777777 3333 56666777777777775
Q ss_pred CChhHHHHHHHhchhC-CCC------CCHhhHHHHHHHHHhcCChhhhhh
Q 043191 297 SKLKIARELFQSLPRA-GLM------PNVVTYNILIRGLCNDGQMDETKH 339 (414)
Q Consensus 297 ~~~~~a~~~~~~m~~~-g~~------p~~~~~~~li~~~~~~g~~~~a~~ 339 (414)
++++..+.++..-.+ ++. -....|..++-.|..-.+++.|..
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 566666666544322 111 134568888888888888877643
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.29 E-value=1.4 Score=31.73 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=48.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Q 043191 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKIL 404 (414)
Q Consensus 346 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 404 (414)
-++.+....+.|++......+++|.+.+|+..|+++|+-.+.+ +.+...+|..+++-+
T Consensus 75 glN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 75 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 6777777889999999999999999999999999999988765 445566787777653
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.66 E-value=1.3 Score=30.02 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 043191 108 TVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153 (414)
Q Consensus 108 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 153 (414)
++.+-++.+....+.|+..+..+.+++|.+.+++..|..+++.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555555543
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.63 E-value=5.5 Score=38.47 Aligned_cols=57 Identities=12% Similarity=0.026 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHH-H-HHHHHHHHhcCC-hHHHHHHHHHHH
Q 043191 164 TSLIKDLCAESR-IMEAAALFTKLRVFGCELDVFT-Y-NTLINGLCRTGH-TIVALNLFEEMA 222 (414)
Q Consensus 164 ~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~-~-~~li~~~~~~g~-~~~a~~~~~~m~ 222 (414)
..++..+...++ ++.|..+|+++.... |...+ + ..++..+...++ --+|.+++.+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l 312 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETL 312 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 344444555666 688999999998874 43222 2 333433333332 234555555544
No 246
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.57 E-value=0.0025 Score=56.84 Aligned_cols=222 Identities=9% Similarity=0.022 Sum_probs=138.4
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043191 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLIN 203 (414)
Q Consensus 124 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 203 (414)
....|..|..+..+.+++.+|++.|- +. -|+..|..+|.+..+.|.+++-..++...++.. .+..+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 34678889999999898888876552 22 266778999999999999999999988776653 34445568999
Q ss_pred HHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHHHHHHHhhcCCCchhHHHHHh-----------hccchhhHhh
Q 043191 204 GLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTIIDGLCKEAGSANFLGFSCMA-----------SFSALNKMAF 272 (414)
Q Consensus 204 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~~~~~~-----------~~~~~~~a~~ 272 (414)
+|++.++..+..+++ ..|+..-...+.+-|...|....+..+...+ ..+++..|.+
T Consensus 125 ayAk~~rL~elEefl-------------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp HHHTSCSSSTTTSTT-------------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTT
T ss_pred HHHhhCcHHHHHHHH-------------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 999999876644332 3566767777788888777654443332222 4444444433
Q ss_pred hhhhhhhccccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh
Q 043191 273 YFPLVRVQCLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS 352 (414)
Q Consensus 273 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~ 352 (414)
..++..++.+|--+-.+|...+.+..|.-.--.+.- ...-...++.-|-..|.+++-.. +++.-..
T Consensus 192 ---aArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIs------LlEaglg 257 (624)
T 3lvg_A 192 ---GARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELIT------MLEAALG 257 (624)
T ss_dssp ---TTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTT------THHHHTT
T ss_pred ---HHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHH------HHHHHhC
Confidence 233456788888888888888877655433222221 11123334555666666666655 5555542
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043191 353 TGLFPDLYTYNILINCFCKIGRVSSGFVIF 382 (414)
Q Consensus 353 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 382 (414)
. -......|+.|.-.|++- ++++..+.+
T Consensus 258 l-ErAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 258 L-ERAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp S-TTCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred C-CchhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 1 123455566665555554 234433333
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.12 E-value=3.2 Score=42.67 Aligned_cols=139 Identities=14% Similarity=0.057 Sum_probs=96.3
Q ss_pred CCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----------------------
Q 043191 67 SITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFP----------------------- 123 (414)
Q Consensus 67 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----------------------- 123 (414)
.+..+.|.++..+. ..+...--.+..++...|++++|.+.|.+... |+..
T Consensus 825 ~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 897 (1139)
T 4fhn_B 825 FKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNL 897 (1139)
T ss_dssp HSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCS
T ss_pred hhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccccccc
Confidence 34555555554443 23444445677888999999999999987421 1100
Q ss_pred CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043191 124 DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD----AVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYN 199 (414)
Q Consensus 124 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 199 (414)
-..-|..++..+-+.+.++.+.++-...++..-.-+ ...|..+.+.+...|++++|...+-.+..... -.....
T Consensus 898 l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr 975 (1139)
T 4fhn_B 898 LSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLL 975 (1139)
T ss_dssp SHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHH
Confidence 112367888899999999999988877766532222 12588899999999999999999988887643 356677
Q ss_pred HHHHHHHhcCChHHH
Q 043191 200 TLINGLCRTGHTIVA 214 (414)
Q Consensus 200 ~li~~~~~~g~~~~a 214 (414)
.|+..+|..|+.+.-
T Consensus 976 ~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHCCHHHH
T ss_pred HHHHHHHhCCChhhh
Confidence 788888877765443
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.79 E-value=3 Score=30.03 Aligned_cols=76 Identities=9% Similarity=0.048 Sum_probs=52.6
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCC
Q 043191 313 GLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTP 392 (414)
Q Consensus 313 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 392 (414)
+-.|+..+--.+..++.+..+.+.. ..++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+++ +.|
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~---~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP 109 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDE---RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HER 109 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHH---HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHH---HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCC
Confidence 3445666666666777777766553 23555888887764222355666777788999999999999999988 456
Q ss_pred C
Q 043191 393 D 393 (414)
Q Consensus 393 ~ 393 (414)
+
T Consensus 110 ~ 110 (134)
T 3o48_A 110 N 110 (134)
T ss_dssp T
T ss_pred C
Confidence 5
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.65 E-value=6.6 Score=28.71 Aligned_cols=74 Identities=8% Similarity=0.040 Sum_probs=52.7
Q ss_pred CCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC
Q 043191 315 MPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393 (414)
Q Consensus 315 ~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 393 (414)
.|+..+--.+..++.+..+.+... +++.+++.+...+-.-.....-.|.-++.+.|++++|.+..+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~---~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDER---LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHH---HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 466666666777888887766533 3566888887754322445566667788999999999999999988 4665
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.53 E-value=6.4 Score=28.39 Aligned_cols=57 Identities=7% Similarity=0.057 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043191 145 FVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLI 202 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 202 (414)
.+-++.+...++.|++.+..+.+++|-+.+++..|..+|+-++.+- .+...+|..++
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 3444444555666677777777777777777777777776665542 22334455444
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.90 E-value=5.6 Score=26.91 Aligned_cols=77 Identities=12% Similarity=0.014 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043191 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220 (414)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 220 (414)
.++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|.. .+.|..+++..-+..
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 4555555555555432 11122222334566677777776665543 567766666544 356666666666666
Q ss_pred HHcCC
Q 043191 221 MANGN 225 (414)
Q Consensus 221 m~~~~ 225 (414)
+..+|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 66665
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.81 E-value=7.2 Score=29.37 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=61.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHhchhC-CCCCCH-------hhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh---
Q 043191 284 LNFLCLIDGLCKISKLKIARELFQSLPRA-GLMPNV-------VTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS--- 352 (414)
Q Consensus 284 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~--- 352 (414)
..+-.-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...+++..|.. .|++...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~------~y~qALq~~k 94 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVS------KYTMALQQKK 94 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHH------HHHHHHHHHH
Confidence 34444566667778888877777664322 112221 245666678888888888777 5554321
Q ss_pred ----CC-----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 353 ----TG-----------------LFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 353 ----~~-----------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
.. ...+...--.+..+|.+.|++++|+.+++.+...
T Consensus 95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 10 1112233344778899999999999999987544
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.60 E-value=13 Score=33.39 Aligned_cols=61 Identities=8% Similarity=0.065 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043191 127 TYNILINCFCKMGRVSHGFVVLGRILRS--CFTPDAVTFTSLIKDLCAESRIMEAAALFTKLR 187 (414)
Q Consensus 127 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 187 (414)
+...+...|.+.|+++.|.++|.++... +...-...+-.+++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444555555555555555555555442 112223344455555555555555555555443
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.90 E-value=13 Score=33.31 Aligned_cols=64 Identities=6% Similarity=-0.212 Sum_probs=52.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLT--GLFPDRYTYNILINCFCKMGRVSHGFVVLGRILR 153 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 153 (414)
..++..+...|.+.|++++|.+.|.++... +..--...+-.+++.+...+++..+...+.+...
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 346788999999999999999999999864 2233456778889999999999999998888754
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.69 E-value=5.1 Score=27.04 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=41.6
Q ss_pred cchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043191 141 VSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEE 220 (414)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 220 (414)
.++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|.. .+.|..+++..-+..
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 4555555555554432 11111222234556677777666655443 566666665544 356666666666666
Q ss_pred HHcCC
Q 043191 221 MANGN 225 (414)
Q Consensus 221 m~~~~ 225 (414)
+..+|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 66655
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.12 E-value=23 Score=30.27 Aligned_cols=132 Identities=8% Similarity=0.023 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcc----hHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043191 93 FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVS----HGFVVLGRILRSCFTPDAVTFTSLIK 168 (414)
Q Consensus 93 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~li~ 168 (414)
|.++..=|.+.+++++|++++-.-.. .+.+.|+.. .+.-+++-+.+.++++|......|+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34444556778888888887654211 122223322 23333444455566666666666666
Q ss_pred HHHhcCCHH-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHH
Q 043191 169 DLCAESRIM-EAAALFTKLRV----FG--CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYST 241 (414)
Q Consensus 169 ~~~~~g~~~-~a~~~~~~m~~----~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~ 241 (414)
.+.....-+ .=.++.+++.. .| -.-|......+...|.+.+++.+|..-|- . | ..++...|..
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g------~~~s~~~~a~ 172 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--G------TKESPEVLAR 172 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--S------CTTHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--c------CCchHHHHHH
Confidence 665544311 11223333322 22 23356667778888999999999888772 2 3 2344467777
Q ss_pred HHHHHHhh
Q 043191 242 IIDGLCKE 249 (414)
Q Consensus 242 li~~~~~~ 249 (414)
++..+...
T Consensus 173 mL~ew~~~ 180 (336)
T 3lpz_A 173 MEYEWYKQ 180 (336)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77776654
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.93 E-value=25 Score=29.81 Aligned_cols=81 Identities=10% Similarity=-0.064 Sum_probs=43.9
Q ss_pred cccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhc---CChhhhhhhhhHHHHHHHHHhCCCCC
Q 043191 281 CLCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCND---GQMDETKHYETVFLLFKRLNSTGLFP 357 (414)
Q Consensus 281 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~a~~~~~~m~~~~~~p 357 (414)
.++.....+...|.+.|++.+|...|-.-.. -+...+..++.-+... |...++
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~----~s~~~~a~~l~~w~~~~~~~~~~e~-------------------- 187 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTH----DSMIKYVDLLWDWLCQVDDIEDSTV-------------------- 187 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCH----HHHHHHHHHHHHHHHHTTCCCHHHH--------------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCC----ccHHHHHHHHHHHHHhcCCCCcchH--------------------
Confidence 3445566677778888888888776642211 0344555554444433 332221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 043191 358 DLYTYNILINCFCKIGRVSSGFVIFGRIL 386 (414)
Q Consensus 358 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 386 (414)
+...-..+ --|.-.|+...|..+|+...
T Consensus 188 dlf~~RaV-L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 188 AEFFSRLV-FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHH-HHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHhcCHHHHHHHHHHHH
Confidence 11212222 23556778888888777654
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.91 E-value=27 Score=29.59 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch----HHHHHHHHHHcCCCCCHHhHHHHHHH
Q 043191 94 NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH----GFVVLGRILRSCFTPDAVTFTSLIKD 169 (414)
Q Consensus 94 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~ 169 (414)
.++..=|.+.+++++|++++..-.. .+.+.|+... |.-+++-+.+.+++++......++..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444455667777777777654211 1222233222 23334444455666666666666665
Q ss_pred HHhcCCHH-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcCCCCCCccccCchhhHHHH
Q 043191 170 LCAESRIM-EAAALFTKLRV----FG--CELDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCEPDAITYSTI 242 (414)
Q Consensus 170 ~~~~g~~~-~a~~~~~~m~~----~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~p~~~~~~~l 242 (414)
+.....-+ .=.++++++.. .| -.-+......+...|.+.|++.+|...|- .+ ..-|...+..+
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~------~~~s~~~~a~~ 171 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LG------THDSMIKYVDL 171 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TS------CHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hC------CCccHHHHHHH
Confidence 55432111 11223333322 22 12356777888888888888888877654 11 11245566666
Q ss_pred HHHHHhh
Q 043191 243 IDGLCKE 249 (414)
Q Consensus 243 i~~~~~~ 249 (414)
+..+...
T Consensus 172 l~~w~~~ 178 (312)
T 2wpv_A 172 LWDWLCQ 178 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665543
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.30 E-value=14 Score=27.82 Aligned_cols=64 Identities=9% Similarity=-0.114 Sum_probs=37.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCH-------hhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDR-------YTYNILINCFCKMGRVSHGFVVLGRILR 153 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~ 153 (414)
..++-.-++.+...+.++.|+-+.+.+... +..|+. .++..+..++...+++..|...|++.++
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344455566667777777777766664322 112221 2445566677777788888877777543
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.02 E-value=18 Score=26.46 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043191 143 HGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF 189 (414)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 189 (414)
+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34444444444321112223333334455555555555555555443
No 261
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=75.94 E-value=35 Score=29.53 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHH
Q 043191 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNIL 365 (414)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~l 365 (414)
.+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++.. .+...+++..+...|+-+.......+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~----re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESA----FKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHH----HHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHH----HHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 456888899999999999999998643221 2344555555665543321 12233488888887766544444333
Q ss_pred H
Q 043191 366 I 366 (414)
Q Consensus 366 i 366 (414)
.
T Consensus 295 ~ 295 (358)
T 3eiq_C 295 E 295 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 262
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.78 E-value=45 Score=29.95 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHhchh--CCCCCC---HhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHh----CCCCC
Q 043191 287 LCLIDGLCKISKLKIARELFQSLPR--AGLMPN---VVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNS----TGLFP 357 (414)
Q Consensus 287 ~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~----~~~~p 357 (414)
..|...|...|++.+|..++.++.. .|.... ...|...++.|...+++..|.. ++.+... ....|
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~------~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATV------LSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHH------HHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHhhcccCCcH
Confidence 4577888999999999999999853 222211 3467777889999999999988 7776542 22222
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 358 D--LYTYNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 358 ~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2 23556667777888999888888877754
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.49 E-value=16 Score=24.72 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=20.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcC
Q 043191 101 AKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSC 155 (414)
Q Consensus 101 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 155 (414)
...|++++|..+.+.+. .||...|-.|. -.+.|..+.+...+.++..+|
T Consensus 50 mNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 50 ANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 34444554444433332 34444444332 223444444444444444333
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=75.00 E-value=21 Score=25.73 Aligned_cols=67 Identities=10% Similarity=0.007 Sum_probs=39.4
Q ss_pred CCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 157 TPDAVTFTSLIKDLCAESRI---MEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 157 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.|+..+--.+..+++++.+. .+++.+++++...+-.-....+--|.-++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555555555566665543 35666666666554111234444555667777777777777777776
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.95 E-value=17 Score=24.66 Aligned_cols=50 Identities=10% Similarity=0.061 Sum_probs=20.5
Q ss_pred HHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043191 135 FCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFG 190 (414)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 190 (414)
+...|++++|..+.+.+ ..||...|-+|.. .+.|..+++..-+.++..+|
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 33444444444433322 1444444443322 33444444444444444333
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.48 E-value=37 Score=27.93 Aligned_cols=53 Identities=8% Similarity=0.021 Sum_probs=36.6
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLT 119 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 119 (414)
++.|++++|++....-.+..| -|...-..+++.+|-.|+|++|.+-++...+.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P--~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASP--KDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 456777777777776666665 66666667777777777777777776666544
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=71.41 E-value=34 Score=28.14 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=31.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 169 DLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
.+.+.|.+++|++....-.+.. +-|...-..++..+|-.|+|++|.+=++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445566666666555544443 44555556666666666666666666555554
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.08 E-value=51 Score=28.16 Aligned_cols=80 Identities=6% Similarity=-0.018 Sum_probs=45.3
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHH
Q 043191 282 LCLNFLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361 (414)
Q Consensus 282 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~ 361 (414)
++.....+...|.+.+++.+|...|- . |-.+....|..++..+...+...++ +...
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~--------------------dlfi 190 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA--------------------PLYC 190 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH--------------------HHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH--------------------HHHH
Confidence 34455667788888889988888773 2 3333446676665555544432221 2222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhh
Q 043191 362 YNILINCFCKIGRVSSGFVIFGRIL 386 (414)
Q Consensus 362 ~~~li~~~~~~g~~~~a~~~~~~m~ 386 (414)
-..++ -|...+++..|..+++...
T Consensus 191 aRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 191 ARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 22222 3555677777777665554
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.69 E-value=42 Score=26.20 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=24.1
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCC
Q 043191 346 LFKRLNSTGLFPD-LYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPD 393 (414)
Q Consensus 346 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 393 (414)
+|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|-
T Consensus 101 if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 101 TFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5555555444322 33444444455555555555555555555554443
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=67.13 E-value=86 Score=29.58 Aligned_cols=78 Identities=9% Similarity=-0.049 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043191 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208 (414)
Q Consensus 129 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 208 (414)
+..+..+++.+++...+..+.. .+.+...-.....+....|+..+|......+-..| ......+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 4445556666666555543322 23455555556667777888777777777776655 33455667788888877
Q ss_pred CChH
Q 043191 209 GHTI 212 (414)
Q Consensus 209 g~~~ 212 (414)
|.+.
T Consensus 150 g~lt 153 (618)
T 1qsa_A 150 GKQD 153 (618)
T ss_dssp TCSC
T ss_pred CCCC
Confidence 7643
No 271
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=66.81 E-value=1.1e+02 Score=30.60 Aligned_cols=116 Identities=6% Similarity=0.029 Sum_probs=62.2
Q ss_pred ccchhhHhhhhh-hhhhccccccHH---HHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhh
Q 043191 264 FSALNKMAFYFP-LVRVQCLCLNFL---CLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKH 339 (414)
Q Consensus 264 ~~~~~~a~~~~~-~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 339 (414)
.|+.+.+..+.+ +........-|. ++.-+|+..|+.....+++..+.... ..+......+--++...|+.+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 537 YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 455566666655 332221122232 23446677788877777888777642 2233333333335555677655555
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhhhh
Q 043191 340 YETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGRV-SSGFVIFGRILP 387 (414)
Q Consensus 340 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 387 (414)
+++.+.+.+ .|.+..-..+.-+....|.. .+++.++..+..
T Consensus 616 ------lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 ------IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp ------HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred ------HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666555543 34444444444444445544 567777777765
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.48 E-value=19 Score=29.44 Aligned_cols=21 Identities=19% Similarity=0.006 Sum_probs=10.4
Q ss_pred CChhHHHHHHHhchhCCCCCC
Q 043191 297 SKLKIARELFQSLPRAGLMPN 317 (414)
Q Consensus 297 ~~~~~a~~~~~~m~~~g~~p~ 317 (414)
+..+...++.+.+.+.|..++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSS
T ss_pred cccchHHHHHHHHHHcCCCCC
Confidence 444444455555555555443
No 273
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=66.26 E-value=37 Score=27.33 Aligned_cols=90 Identities=13% Similarity=0.059 Sum_probs=54.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCC----CHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHH
Q 043191 95 ILFGCLAKTKHYDTVLSLFKRLNLT--GLFP----DRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIK 168 (414)
Q Consensus 95 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 168 (414)
--++.+....++++|.+++++..+. ++++ +.......+..-.....-..+..+.+.+ .. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3566778888999999988876532 2221 1122233333333333334445555555 22 445666777778
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 043191 169 DLCAESRIMEAAALFTKLR 187 (414)
Q Consensus 169 ~~~~~g~~~~a~~~~~~m~ 187 (414)
.+.+.|+-++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 8888999999988887654
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.89 E-value=48 Score=25.87 Aligned_cols=57 Identities=11% Similarity=0.029 Sum_probs=46.1
Q ss_pred CCcchHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 043191 139 GRVSHGFVVLGRILRSCFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDV 195 (414)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 195 (414)
++...+.++|..|...|+-- -+..|......+...|++.+|.++|+.-.+.+-.|-.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 34668999999998876543 4567888888999999999999999999888777743
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.16 E-value=21 Score=26.48 Aligned_cols=54 Identities=19% Similarity=0.181 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH
Q 043191 107 DTVLSLFKRLNLTGLFPD-RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 160 (414)
Q Consensus 107 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (414)
+++.++|..|..+|+--. +.-|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 458899999998877653 556777888888999999999999999888777644
No 276
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=63.15 E-value=53 Score=25.83 Aligned_cols=49 Identities=6% Similarity=0.053 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHhCCCCCCHH--HHH-----HHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 340 YETVFLLFKRLNSTGLFPDLY--TYN-----ILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 340 ~~~a~~~~~~m~~~~~~p~~~--~~~-----~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
++.|+.+|+.+.+..-.++.. ... ..+-.|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 577777999998753222221 122 3344688999999999999999875
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.52 E-value=22 Score=26.71 Aligned_cols=72 Identities=8% Similarity=0.007 Sum_probs=51.6
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH
Q 043191 87 RPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD-RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 161 (414)
Q Consensus 87 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (414)
+.|..-...-|...-.. +.+.++|..|..+|+--. +..|......+-..|++..|.++|..-++.+-.|-..
T Consensus 60 knD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 60 YSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp TTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 45555444433322222 457889999998887654 5567778888889999999999999999988777554
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.67 E-value=65 Score=26.02 Aligned_cols=81 Identities=10% Similarity=0.061 Sum_probs=41.2
Q ss_pred HHhcCChhHHHHHHHhchhCCCCC---CHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHH--HHHHHH
Q 043191 293 LCKISKLKIARELFQSLPRAGLMP---NVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT--YNILIN 367 (414)
Q Consensus 293 ~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~ 367 (414)
.+..|+.+-+..+++.. |..+ +..-.+.+..+. ..+....... +++.+.+.|..++... -.+.+.
T Consensus 155 A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~------i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 155 AAEKGHVEVLKILLDEM---GADVNACDNMGRNALIHAL-LSSDDSDVEA------ITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp HHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHHHH-HCSCTTTHHH------HHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred HHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHHHH-HccccchHHH------HHHHHHHcCCCCCCcCCCCCcHHH
Confidence 33456666555555432 2222 222333444333 3444444344 7777777777655421 123344
Q ss_pred HHHhcCCHHHHHHHHH
Q 043191 368 CFCKIGRVSSGFVIFG 383 (414)
Q Consensus 368 ~~~~~g~~~~a~~~~~ 383 (414)
..+..|+.+-+..+++
T Consensus 225 ~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 4566777776665555
No 279
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=56.36 E-value=46 Score=28.54 Aligned_cols=97 Identities=15% Similarity=0.035 Sum_probs=50.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHH
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYT--YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTS 165 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (414)
.|..-++ .+...+..|+.+.+..++ +.|..++... -.+.+...+..|+. ++++.+++.|..++...-..
T Consensus 16 ~d~~g~t-~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENME-KIHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCV----DTAKYLASVGEVHSLWHGQK 86 (364)
T ss_dssp CCHHHHH-HHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCH----HHHHHHHHHCCCCCCBTTBC
T ss_pred cCCCCCC-HHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCccccCCCC
Confidence 3444444 444555677765555544 4454443221 12234444556664 34455555554444422233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 043191 166 LIKDLCAESRIMEAAALFTKLRVFGCEL 193 (414)
Q Consensus 166 li~~~~~~g~~~~a~~~~~~m~~~g~~~ 193 (414)
.+...+..|+.+-+..+++.....|..+
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCH
Confidence 4455567788887777777765555443
No 280
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=56.07 E-value=93 Score=26.63 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 043191 93 FNILFGCLAKTKHYDTVLSLFKRLN 117 (414)
Q Consensus 93 ~~~li~~~~~~~~~~~a~~~~~~m~ 117 (414)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777777777777777777664
No 281
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=54.23 E-value=24 Score=21.14 Aligned_cols=48 Identities=17% Similarity=0.065 Sum_probs=28.6
Q ss_pred HhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 043191 71 NEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPD 124 (414)
Q Consensus 71 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 124 (414)
++.++.+..| -|+......--..-...|+.+.|+..+-.|...+..|+
T Consensus 10 ee~l~~L~em------FP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDM------FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHH------CSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHH------CCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 5566666666 24433322211222457788889988888877766665
No 282
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.01 E-value=73 Score=25.59 Aligned_cols=90 Identities=14% Similarity=0.095 Sum_probs=57.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHc--CCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043191 131 LINCFCKMGRVSHGFVVLGRILRS--CFTP----DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLING 204 (414)
Q Consensus 131 li~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 204 (414)
-+..+....++++|.+++++..+. +++. +.......+..-.....-.-+..+.+++.. ..+...-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 467788899999999999887653 3332 112223334444443444445555555533 4456666777789
Q ss_pred HHhcCChHHHHHHHHHHHc
Q 043191 205 LCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 205 ~~~~g~~~~a~~~~~~m~~ 223 (414)
+.+.|+.++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 9999999999999866653
No 283
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=52.11 E-value=82 Score=24.50 Aligned_cols=63 Identities=10% Similarity=0.069 Sum_probs=41.9
Q ss_pred HHHHHHH---hcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCC
Q 043191 130 ILINCFC---KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR-----IMEAAALFTKLRVFGCEL 193 (414)
Q Consensus 130 ~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~~~ 193 (414)
.+|+++. +-.+.+.|+-.+.+|++.| .|.-..-..++.+.-..|. ...|...++.....|.+-
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 3555554 4568888888888898888 6665555666666666664 345566666666777543
No 284
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.26 E-value=48 Score=21.06 Aligned_cols=65 Identities=11% Similarity=0.090 Sum_probs=48.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCccc
Q 043191 347 FKRLNSTGLFPDLYTYNILINCFCKIG-RVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412 (414)
Q Consensus 347 ~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 412 (414)
.+.|.+.|++.+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-...
T Consensus 5 ~~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 5 NTALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 3456678888776554 4456665554 566788899999888777788899999999999887653
No 285
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.26 E-value=36 Score=27.05 Aligned_cols=55 Identities=20% Similarity=0.112 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCH
Q 043191 106 YDTVLSLFKRLNLTGLFPD-RYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 160 (414)
Q Consensus 106 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (414)
.+.+.++|..|..+||--. ...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3688899999999987654 556788888889999999999999999998777643
No 286
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=48.90 E-value=92 Score=24.16 Aligned_cols=61 Identities=18% Similarity=0.093 Sum_probs=34.7
Q ss_pred HHHHHH---hcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCC
Q 043191 131 LINCFC---KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR-----IMEAAALFTKLRVFGC 191 (414)
Q Consensus 131 li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~ 191 (414)
+|+++. +-.+.+.|+-.+.+|++.|-.|.-..-..++.+.-..|. ...|...++.....|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 444443 346777777777777777765555555555555555443 2344555555555553
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.86 E-value=74 Score=24.95 Aligned_cols=28 Identities=7% Similarity=0.014 Sum_probs=14.8
Q ss_pred HHHHHhcCCcchHHHHHHHHHHcCCCCC
Q 043191 132 INCFCKMGRVSHGFVVLGRILRSCFTPD 159 (414)
Q Consensus 132 i~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (414)
+...+..|+.+....+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3444555666655555555555554433
No 288
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=48.54 E-value=16 Score=21.92 Aligned_cols=29 Identities=28% Similarity=0.139 Sum_probs=14.7
Q ss_pred HhHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 043191 71 NEALCVFDYMLNMRPSRPPVTSFNILFGCL 100 (414)
Q Consensus 71 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 100 (414)
++|.+.|..|++... .++..+|...|+..
T Consensus 3 eEae~aF~~lL~~~~-V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQ-VDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTT-CCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcC-CCCCCcHHHHHHHh
Confidence 445555555555444 34445555555554
No 289
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.50 E-value=21 Score=28.25 Aligned_cols=19 Identities=5% Similarity=-0.424 Sum_probs=8.6
Q ss_pred HHHhcCCHHHHHHHHHhhh
Q 043191 368 CFCKIGRVSSGFVIFGRIL 386 (414)
Q Consensus 368 ~~~~~g~~~~a~~~~~~m~ 386 (414)
...+.|+.+-+..+++...
T Consensus 216 ~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHTTCHHHHHHHHHHC-
T ss_pred HHHHcCcHHHHHHHHHhhh
Confidence 3345555554444444433
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.42 E-value=79 Score=23.30 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--cchHHHHHHHHHHcCCCCCH
Q 043191 93 FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR--VSHGFVVLGRILRSCFTPDA 160 (414)
Q Consensus 93 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 160 (414)
.+.++.-|...|+.++|...++++..... -...+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 46788888888999999999988852111 122333444444444322 34566777777766654333
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.30 E-value=83 Score=23.20 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHH
Q 043191 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361 (414)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~ 361 (414)
.+.++.-|...|+.++|.+.++++...... ...+...+..++-+.++-+ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~----re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESA----FKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHH----HHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHH----HHHHHHHHHHHHHCCCcCHHHH
Confidence 456889999999999999999998632111 2334455555665543221 1223448888887776544443
No 292
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=46.62 E-value=78 Score=22.67 Aligned_cols=13 Identities=8% Similarity=0.026 Sum_probs=5.3
Q ss_pred chHHHHHHHHHHc
Q 043191 142 SHGFVVLGRILRS 154 (414)
Q Consensus 142 ~~a~~~~~~~~~~ 154 (414)
-.|.++++.+.+.
T Consensus 35 ~sa~ei~~~l~~~ 47 (136)
T 1mzb_A 35 MSAEDVYKALMEA 47 (136)
T ss_dssp BCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhh
Confidence 3344444444333
No 293
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=46.14 E-value=85 Score=22.98 Aligned_cols=18 Identities=11% Similarity=-0.005 Sum_probs=7.7
Q ss_pred hcCCcchHHHHHHHHHHc
Q 043191 137 KMGRVSHGFVVLGRILRS 154 (414)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~ 154 (414)
..+..-.|.++++.+.+.
T Consensus 38 ~~~~~~sa~ei~~~l~~~ 55 (150)
T 2xig_A 38 RSGTHLSPEEITHSIRQK 55 (150)
T ss_dssp HCSSCBCHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHh
Confidence 333344444444444443
No 294
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=46.11 E-value=85 Score=22.98 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHc
Q 043191 178 EAAALFTKLRVF 189 (414)
Q Consensus 178 ~a~~~~~~m~~~ 189 (414)
.|.++++.+.+.
T Consensus 35 sa~ei~~~l~~~ 46 (150)
T 2w57_A 35 SAEELYKKLIDL 46 (150)
T ss_dssp EHHHHHHHHHHT
T ss_pred CHHHHHHHHHHh
Confidence 344444444433
No 295
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=46.06 E-value=83 Score=22.84 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043191 177 MEAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209 (414)
Q Consensus 177 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 209 (414)
-.|.++++.+.+.+...+..|.---+..+.+.|
T Consensus 38 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 38 PTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 334444444444332333333333334444444
No 296
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.78 E-value=84 Score=22.82 Aligned_cols=66 Identities=8% Similarity=0.080 Sum_probs=49.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCccc
Q 043191 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412 (414)
Q Consensus 346 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 412 (414)
+.+.+.+.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-..+
T Consensus 9 ~~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 9 ALETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 34556778888776543 3345555667777899999999988777788888888899998887654
No 297
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=45.54 E-value=85 Score=22.81 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043191 178 EAAALFTKLRVFGCELDVFTYNTLINGLCRTG 209 (414)
Q Consensus 178 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 209 (414)
.|.++++.+.+.+...+..|.---+..+.+.|
T Consensus 35 ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 35 TPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp CHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 34444444444333333333222333344443
No 298
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.07 E-value=62 Score=27.28 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHH
Q 043191 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361 (414)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~ 361 (414)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++.+ .+...+++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~----re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGEST----FKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHH----HHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHH----HHHHHHHHHHHHHCCCCCHHHH
Confidence 456888999999999999999998642111 2334445555555543321 1223348888887766544443
No 299
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=44.25 E-value=1.2e+02 Score=23.99 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=30.2
Q ss_pred CHHhHHHHHHHHHhcCCCCCCHh--hHH-----HHHHHHHhcCChhHHHHHHHHHHhC
Q 043191 69 TPNEALCVFDYMLNMRPSRPPVT--SFN-----ILFGCLAKTKHYDTVLSLFKRLNLT 119 (414)
Q Consensus 69 ~~~~A~~~~~~~~~~~~~~~~~~--~~~-----~li~~~~~~~~~~~a~~~~~~m~~~ 119 (414)
-.+.|+.+|+.+.+..+ .++.. .-. ..+..|.+.|.+++|.++|++....
T Consensus 87 PLESAl~v~~~I~~e~~-l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 87 PLESAINVLEMIKTEFT-LTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 45788888888877654 22211 111 2334566777777777777776543
No 300
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=44.10 E-value=2.1e+02 Score=26.95 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=33.8
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcch
Q 043191 88 PPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSH 143 (414)
Q Consensus 88 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 143 (414)
.+...-.....+....|+..+|......+=..|. .....+..++..+.+.|....
T Consensus 100 ~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 100 GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCH
T ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCH
Confidence 4555555566667777777777776666554442 244566777777776665443
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.03 E-value=66 Score=25.25 Aligned_cols=87 Identities=13% Similarity=0.035 Sum_probs=46.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHh--HHHHHHHHH
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYT--YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVT--FTSLIKDLC 171 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~ 171 (414)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+. ++++.+.+.|..++... -...+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP----SVVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCH----HHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 34455677888777777776666655443221 12234444555654 45555566665544321 123344455
Q ss_pred hcCCHHHHHHHHHHH
Q 043191 172 AESRIMEAAALFTKL 186 (414)
Q Consensus 172 ~~g~~~~a~~~~~~m 186 (414)
..|+.+-+..+++..
T Consensus 88 ~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 88 EHRSPTCLRALLDSA 102 (241)
T ss_dssp HTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHcC
Confidence 677776665555543
No 302
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.37 E-value=45 Score=25.37 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=7.3
Q ss_pred HHHHHHhCCCCCC
Q 043191 346 LFKRLNSTGLFPD 358 (414)
Q Consensus 346 ~~~~m~~~~~~p~ 358 (414)
+.+.+.+.|..++
T Consensus 160 ~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 160 IVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHTTCCTT
T ss_pred HHHHHHHCCCCCC
Confidence 5555556655544
No 303
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=43.28 E-value=68 Score=23.92 Aligned_cols=58 Identities=10% Similarity=0.005 Sum_probs=27.0
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCC
Q 043191 117 NLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRS--CFTPDAVTFTSLIKDLCAESR 175 (414)
Q Consensus 117 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 175 (414)
.+.|+..+.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+.+.|-
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3445554332 223444444444555555666555554 434444443333445555553
No 304
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.40 E-value=90 Score=22.19 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHH
Q 043191 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYT 361 (414)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~ 361 (414)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++-+ .+....++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~----~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESA----FKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHH----HHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHH----HHHHHHHHHHHHHCCCcCHHHH
Confidence 456888999999999999999998632111 2334455555665553221 1223348888887776544443
No 305
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=41.83 E-value=1.3e+02 Score=23.69 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=40.1
Q ss_pred HHHHHHHHH---hcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCC
Q 043191 128 YNILINCFC---KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR-----IMEAAALFTKLRVFGCE 192 (414)
Q Consensus 128 ~~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~~ 192 (414)
+..+|+++. +-.+.+.|+-.+.+|++.|-.|.-..-..++.+.-..|. ...|...++.....|.+
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 333555554 346778888888888887766655555555555555553 34556666666666753
No 306
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.56 E-value=95 Score=22.71 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=47.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCccc
Q 043191 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412 (414)
Q Consensus 346 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 412 (414)
+.+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-..+
T Consensus 14 ~~~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEE
Confidence 3445667888755443 34456666667778899999999888777788888888889988887654
No 307
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=41.28 E-value=1.6e+02 Score=24.89 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHhhhcCCCCCCCCCHHhHHHHHHHHHhc
Q 043191 46 RASLEQFLKERCKSSGEGDITSITPNEALCVFDYMLNM 83 (414)
Q Consensus 46 ~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 83 (414)
-..+...++...+. ...|++++|+..|+.+...
T Consensus 111 l~~L~~~Lk~gyk~-----~t~gKf~eAl~~Fr~iL~~ 143 (325)
T 3mv2_A 111 LDVVNEKMNEGYKN-----FKLNKPDIAIECFREAIYR 143 (325)
T ss_dssp HHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHH
Confidence 34455555555554 5679999999999988754
No 308
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=40.21 E-value=69 Score=20.28 Aligned_cols=58 Identities=9% Similarity=0.001 Sum_probs=25.4
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcC-CcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 043191 116 LNLTGLFPDRYTYNILINCFCKMG-RVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAES 174 (414)
Q Consensus 116 m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 174 (414)
|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344454444332 22333443332 34445555555555443334444444444444443
No 309
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.10 E-value=98 Score=21.98 Aligned_cols=67 Identities=10% Similarity=0.144 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--cchHHHHHHHHHHcCCCCCH
Q 043191 93 FNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR--VSHGFVVLGRILRSCFTPDA 160 (414)
Q Consensus 93 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 160 (414)
.+.++.-|...|+.++|...++++..... -...+...+..++-+.++ .+....++..+.+.|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 46678888888999999999888752111 122333344444444332 34566777777766654433
No 310
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.57 E-value=45 Score=24.96 Aligned_cols=52 Identities=15% Similarity=-0.015 Sum_probs=37.1
Q ss_pred CCCCHHhHHHHHHHHHhcCCCCC--CHhhHHHHHH-H-----HHhcCChhHHHHHHHHHHh
Q 043191 66 TSITPNEALCVFDYMLNMRPSRP--PVTSFNILFG-C-----LAKTKHYDTVLSLFKRLNL 118 (414)
Q Consensus 66 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~m~~ 118 (414)
..|++-+|-++|+......+ .+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~-~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYG-RGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTC-SSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44788889899988887765 45 5556777777 2 3457888888888887643
No 311
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=39.46 E-value=2e+02 Score=25.28 Aligned_cols=58 Identities=14% Similarity=0.003 Sum_probs=28.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 043191 95 ILFGCLAKTKHYDTVLSLFKRLNLTGLFPD-----RYTYNILINCFCKMGRVSHGFVVLGRIL 152 (414)
Q Consensus 95 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~ 152 (414)
.++..|...|++.+|.+++.++.+.=-..| .++|..-+..|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345555666666666655555543200111 2233444445555555555555555443
No 312
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.08 E-value=1.1e+02 Score=22.48 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=46.6
Q ss_pred cchHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043191 141 VSHGFVVLGRILRSCFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196 (414)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 196 (414)
.+.+.++|..|...|+-. -+..|......+...|++.+|.++|+.-.+.+-.|-..
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 456999999999887643 45678889999999999999999999999888777543
No 313
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.77 E-value=93 Score=22.25 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=46.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCccc
Q 043191 349 RLNSTGLFPDLYTYNILINCFCKIG-RVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412 (414)
Q Consensus 349 ~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 412 (414)
.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-..+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 45667887765543 3445555665 677899999999988777888888888888888887654
No 314
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=37.49 E-value=2.2e+02 Score=25.39 Aligned_cols=54 Identities=15% Similarity=0.048 Sum_probs=31.1
Q ss_pred hcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcC
Q 043191 137 KMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESR-----IMEAAALFTKLRVFG 190 (414)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~g 190 (414)
+.++.+.|+.++.+|.+.|..|....-..++.+.-.-|. ...|...++.....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 345777777777777777766555444445555544443 234444555555555
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=37.25 E-value=57 Score=21.82 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHhC
Q 043191 106 YDTVLSLFKRLNLT 119 (414)
Q Consensus 106 ~~~a~~~~~~m~~~ 119 (414)
.+.|.++++.+..+
T Consensus 53 ~~~ar~Lld~L~~r 66 (97)
T 3ygs_P 53 RDQARQLIIDLETR 66 (97)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHc
Confidence 44444444444444
No 316
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=37.06 E-value=90 Score=22.67 Aligned_cols=65 Identities=11% Similarity=0.081 Sum_probs=48.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCccc
Q 043191 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412 (414)
Q Consensus 346 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 412 (414)
+-+.+.+.|++++..=. .++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-..+
T Consensus 6 ~~~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 45567778888776533 3344455556 67899999999988877888888888888888887654
No 317
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=36.95 E-value=1.3e+02 Score=22.81 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=38.2
Q ss_pred HhhHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCC
Q 043191 90 VTSFNILFGC-LAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 157 (414)
Q Consensus 90 ~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (414)
..-|..|+.. +.-.|.+.+++-++...- ..+..-|..| +|.+..++..|+..++.++...+.
T Consensus 32 ~~eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 32 KPEYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp --CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred ChHHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccc
Confidence 3356655543 345788888777664321 1122333433 577888999999999999866554
No 318
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.81 E-value=2.5e+02 Score=25.72 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=46.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCH--hhH-HHHHHHHHhcCCcchHHHHHHHHHHc
Q 043191 90 VTSFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFPDR--YTY-NILINCFCKMGRVSHGFVVLGRILRS 154 (414)
Q Consensus 90 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~--~~~-~~li~~~~~~~~~~~a~~~~~~~~~~ 154 (414)
...+|.+++.|...+.++.|..+..+..-- ...+|. .+| -.+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 456899999999999999999999987411 001121 122 23456677788999999888887765
No 319
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.04 E-value=1.1e+02 Score=22.35 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=48.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCccc
Q 043191 346 LFKRLNSTGLFPDLYTYNILINCFCKIG-RVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412 (414)
Q Consensus 346 ~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 412 (414)
+.+.|.+.|++++..=.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-..+
T Consensus 4 ~~~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 4 NNQALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 344567788887765443 344555555 677899999999988777888888888899988887654
No 320
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.28 E-value=1.6e+02 Score=24.08 Aligned_cols=105 Identities=10% Similarity=-0.027 Sum_probs=49.6
Q ss_pred cCChhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 043191 103 TKHYDTVLSLFKRLNLTGLF-PDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAA 181 (414)
Q Consensus 103 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 181 (414)
..+..+..+++.. .++. .|..-.+ .+...+..|+.+- ++.+.+.|..++...-.+.+...+..|+.+-+..
T Consensus 9 ~~~~~~v~~lL~~---~~~~~~d~~g~t-~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 9 TWKSKQLKSFLSS---KDTFKADVHGHS-ASYYAIADNNVRL----VCTLLNAGALKNLLENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp GCCHHHHHHHHHS---TTTTCCCTTSCC-HHHHHHHTTCHHH----HHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHH
T ss_pred hcCHHHHHHHHHh---CCCCccCCCCCC-HHHHHHHcCCHHH----HHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 3445555555543 2322 2333333 3444556666544 4445555554443322344555666777664444
Q ss_pred HHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHH
Q 043191 182 LFTKLRVFGCELDV---FTYNTLINGLCRTGHTIVALNLFEE 220 (414)
Q Consensus 182 ~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~ 220 (414)
+ .+.|..++. .-++.| ...+..|+.+-+..+++.
T Consensus 81 L----l~~ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 81 L----LFSGLDDSQFDDKGNTAL-YYAVDSGNMQTVKLFVKK 117 (285)
T ss_dssp H----HHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHH
T ss_pred H----HHCCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHHhc
Confidence 4 344544432 222333 333556776655555443
No 321
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.80 E-value=1.9e+02 Score=23.01 Aligned_cols=54 Identities=4% Similarity=0.068 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043191 141 VSHGFVVLGRILRSCFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELD 194 (414)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 194 (414)
.+....+|..|...|+-- -...|......+...|++.+|.++|..-.+.+-.|-
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 468889999999887643 456788888899999999999999999988877773
No 322
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.39 E-value=95 Score=21.99 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=25.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 140 (414)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444445555666666666665544455555555555555553
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.11 E-value=1.3e+02 Score=21.30 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043191 174 SRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRTGH 210 (414)
Q Consensus 174 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 210 (414)
+..-.|.++++.+.+.+...+..|.---+..+.+.|-
T Consensus 24 ~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 24 DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3333444444444444333333333333344444443
No 324
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=31.87 E-value=2.6e+02 Score=24.48 Aligned_cols=131 Identities=14% Similarity=-0.020 Sum_probs=85.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC---CHhhHHHHHHHHHhcCC-cchHHHHHHHHHHcCCCCCHHhH---
Q 043191 92 SFNILFGCLAKTKHYDTVLSLFKRLNLT-GLFP---DRYTYNILINCFCKMGR-VSHGFVVLGRILRSCFTPDAVTF--- 163 (414)
Q Consensus 92 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--- 163 (414)
+...|...|.+.|+.++..+++...... +.-| .......++..+....+ .+.-.++..+..+.. .-+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4567888899999999998888876432 1122 33446677777766543 233333333333211 0011222
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 164 ---TSLIKDLCAESRIMEAAALFTKLRVFGCELD-----VFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 164 ---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
..++..|...|++.+|.+++.++.+.=-..| ..+|-.-++.|...+++.++...+.....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 2578889999999999999988876311111 34566778889999999999999988765
No 325
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.75 E-value=1.6e+02 Score=21.89 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=37.5
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChH
Q 043191 150 RILRSCFTPDAVTFTSLIKDLCAESRIMEAAALFTKLRVF--GCELDVFTYNTLINGLCRTGHTI 212 (414)
Q Consensus 150 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~ 212 (414)
.+.+.|++.+. --..++..+...+..-.|.++++.+.+. +...+..|.---+..+.+.|-..
T Consensus 23 ~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 23 ILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34455766544 3345556666666666777777777766 54455555444556677777543
No 326
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=31.08 E-value=1.7e+02 Score=21.95 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043191 142 SHGFVVLGRILRSCFTP-DAVTFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF 196 (414)
Q Consensus 142 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 196 (414)
+...++|..|...|+-. -+..|......+...|++.+|.++|..-.+.+-.|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 56889999999987643 45678888889999999999999999999988777654
No 327
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=30.95 E-value=2.6e+02 Score=24.13 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHhhhhCCCCCCHHHH
Q 043191 320 TYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILINCFCKIGR--VSSGFVIFGRILPSCFTPDAVTF 397 (414)
Q Consensus 320 ~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~ 397 (414)
..+.++.-|...|+.++|.+ .++++....+. .......+..++-+.++ .+...+++..+.+.|+-+.....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~------ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEH------CLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHH------HHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHH------HHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 46788999999999999988 88888643222 12334444555555433 45677888888877766554444
Q ss_pred HHHHHHH
Q 043191 398 TSLIKIL 404 (414)
Q Consensus 398 ~~li~~~ 404 (414)
..+...+
T Consensus 292 ~Gf~~vl 298 (358)
T 3eiq_C 292 RGYERIY 298 (358)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 328
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=30.91 E-value=94 Score=19.03 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043191 162 TFTSLIKDLCAESRIMEAAALFTKLRVFGCELDVFTYNTLINGLCRT 208 (414)
Q Consensus 162 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 208 (414)
.++-++..+++..-.+.++..+++..+.| ..+..+|---++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34556666666666677777777777766 45666665555555543
No 329
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.69 E-value=86 Score=22.57 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=25.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 043191 95 ILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGR 140 (414)
Q Consensus 95 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 140 (414)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444454545555666666666665544555555555555555553
No 330
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.55 E-value=3.9e+02 Score=26.76 Aligned_cols=48 Identities=17% Similarity=0.100 Sum_probs=29.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHhchhCCCCCCH----hhHHHHHHHHHhcC
Q 043191 285 NFLCLIDGLCKISKLKIARELFQSLPRAGLMPNV----VTYNILIRGLCNDG 332 (414)
Q Consensus 285 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g 332 (414)
-|..++..+-+.+.++-+.++-+...+.--.-|. ..|+.++++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 4677888888888888888877766543211122 24555666555433
No 331
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=29.34 E-value=1.4e+02 Score=27.54 Aligned_cols=90 Identities=6% Similarity=-0.014 Sum_probs=44.3
Q ss_pred CHhhHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHH
Q 043191 89 PVTSFNILFGCLAKT--KHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSL 166 (414)
Q Consensus 89 ~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (414)
+-..|..-|..+..+ .+.........++..+=.--+..-..-++..|++.|-.+.|.++++.+-..-+. +...+ ..
T Consensus 478 ~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eA 555 (570)
T 3f3f_C 478 DKELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ES 555 (570)
T ss_dssp CTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------
T ss_pred CCcchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HH
Confidence 344577777766654 344555666666664411225666778899999999999999999888665433 44455 55
Q ss_pred HHHHHhcCCHHHHH
Q 043191 167 IKDLCAESRIMEAA 180 (414)
Q Consensus 167 i~~~~~~g~~~~a~ 180 (414)
+..|+++|+++.+.
T Consensus 556 L~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 556 IANFSRAGKYELVK 569 (570)
T ss_dssp --------------
T ss_pred HHHHHHcCChhhcc
Confidence 66788888887653
No 332
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=28.73 E-value=2.4e+02 Score=22.97 Aligned_cols=137 Identities=7% Similarity=0.035 Sum_probs=67.9
Q ss_pred CCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchH
Q 043191 65 ITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHG 144 (414)
Q Consensus 65 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 144 (414)
++..+..+..+++.. .++...|..-+ +.+...+..|+.+-+..+++ .|..++...-.+.+...+..|+.+
T Consensus 7 i~~~~~~~v~~lL~~---~~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~-- 76 (285)
T 3kea_A 7 INTWKSKQLKSFLSS---KDTFKADVHGH-SASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTK-- 76 (285)
T ss_dssp GGGCCHHHHHHHHHS---TTTTCCCTTSC-CHHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCH--
T ss_pred HHhcCHHHHHHHHHh---CCCCccCCCCC-CHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHH--
Confidence 345566666666653 33433444433 34555566788765555444 444433322233455556667655
Q ss_pred HHHHHHHHHcCCCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChHHHHHH
Q 043191 145 FVVLGRILRSCFTPDAVT--FTSLIKDLCAESRIMEAAALFTKLRVFGCELDVF---TYNTLINGLCRTGHTIVALNL 217 (414)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~ 217 (414)
+++.+.+.|..++... -.+.+...+..|+.+-+.-+++ .|..++.. -+.+.+...+..|+.+-+..+
T Consensus 77 --~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L 148 (285)
T 3kea_A 77 --IVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF 148 (285)
T ss_dssp --HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH
T ss_pred --HHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 4445556666554321 1223445566777765554444 34433322 223344445566776544333
No 333
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=28.53 E-value=2.9e+02 Score=23.89 Aligned_cols=24 Identities=0% Similarity=0.057 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 043191 94 NILFGCLAKTKHYDTVLSLFKRLN 117 (414)
Q Consensus 94 ~~li~~~~~~~~~~~a~~~~~~m~ 117 (414)
..+|.-|...|+.++|...++++.
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 455666666666666666666664
No 334
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.40 E-value=1.5e+02 Score=20.68 Aligned_cols=43 Identities=9% Similarity=-0.111 Sum_probs=30.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhhC
Q 043191 346 LFKRLNSTGLFPDLYTYNILINCFCKIGRVSSGFVIFGRILPS 388 (414)
Q Consensus 346 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 388 (414)
+|+.+....+.|+...--.-+..+...++++.|..+.-.+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 6777777777555444333344567889999999999888764
No 335
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=28.26 E-value=71 Score=25.55 Aligned_cols=57 Identities=12% Similarity=-0.043 Sum_probs=35.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh-------HHHHHHHHH--hcCCcchHHHHHHHHH
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYT-------YNILINCFC--KMGRVSHGFVVLGRIL 152 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~li~~~~--~~~~~~~a~~~~~~~~ 152 (414)
.+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 34456678888888888887777665555332 233433332 5677777766666543
No 336
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.82 E-value=89 Score=22.50 Aligned_cols=50 Identities=6% Similarity=-0.070 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHcCCccc
Q 043191 363 NILINCFCKIGRVSSGFVIFGRILPSCFTPDAVTFTSLIKILEINSFFRQ 412 (414)
Q Consensus 363 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 412 (414)
..++..+...++.-.|.++++.+.+.+...+..|.-.-++.+...|-..+
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34556666666777899999999888777788888888888888887654
No 337
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=27.76 E-value=53 Score=19.65 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=13.6
Q ss_pred cCChHHHHHHHHHHHcCCC
Q 043191 208 TGHTIVALNLFEEMANGNG 226 (414)
Q Consensus 208 ~g~~~~a~~~~~~m~~~~~ 226 (414)
.-+++.|...|.++...|.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~ 51 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGE 51 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 3467788888888776663
No 338
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.38 E-value=1.9e+02 Score=21.52 Aligned_cols=53 Identities=8% Similarity=-0.067 Sum_probs=39.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHc
Q 043191 171 CAESRIMEAAALFTKLRVFGCEL--DVFTYNTLIN-G-----LCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 171 ~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 223 (414)
-..|++-+|.++|+..-...-.+ +...|..||+ . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34489999999999887654344 4566777777 2 3467999999999988765
No 339
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.35 E-value=3.6e+02 Score=24.68 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043191 195 VFTYNTLINGLCRTGHTIVALNLFEEMA 222 (414)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 222 (414)
...+|.+++.|...+.++.|..+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~ 258 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE 258 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence 4678999999999999999999999885
No 340
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=27.20 E-value=1.6e+02 Score=22.72 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=6.1
Q ss_pred HHHHHHhcCChhH
Q 043191 96 LFGCLAKTKHYDT 108 (414)
Q Consensus 96 li~~~~~~~~~~~ 108 (414)
.+...+..|+.+-
T Consensus 45 ~L~~A~~~~~~~~ 57 (240)
T 3eu9_A 45 LLHWAAINNRIDL 57 (240)
T ss_dssp HHHHHHHTTCHHH
T ss_pred HHHHHHHhCCHHH
Confidence 3444455555543
No 341
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.17 E-value=1.1e+02 Score=24.31 Aligned_cols=58 Identities=9% Similarity=-0.081 Sum_probs=36.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhc---CCcchHHHHHHHHHHc
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLTGLFPDR-------YTYNILINCFCKM---GRVSHGFVVLGRILRS 154 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~---~~~~~a~~~~~~~~~~ 154 (414)
.+...++.|+.+.+..+++.+.+.|..++. .-.+. +...+.. |+.+-+..+++.-...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~-L~~A~~~~~~g~~~~v~~Ll~~g~~~ 72 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTC-LMKAVLNLQDGVNACIMPLLQIDKDS 72 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCH-HHHHHHTCBTTBCTTHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCH-HHHHHHccccchHHHHHHHHhcCCcc
Confidence 455567788888887888877777655443 22333 4444455 7777777777655443
No 342
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.06 E-value=1.4e+02 Score=19.97 Aligned_cols=63 Identities=16% Similarity=0.062 Sum_probs=42.3
Q ss_pred HHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 043191 301 IARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTYNILI 366 (414)
Q Consensus 301 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~~~li 366 (414)
.+.++.++....|+.|+..+..-++.-|...+- + +.++-.-|-.|.. ...|..|+..+.+.+=
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFst-s~~g~~pT~enL~~FE 89 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCT-STHKVGLTSEILNSFE 89 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHH-HHTCSBCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHH-hcCCCCCCHHHHHHHH
Confidence 467788888888999999888888888877764 2 4443223333422 3457788877766553
No 343
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.93 E-value=2.2e+02 Score=21.94 Aligned_cols=76 Identities=9% Similarity=0.043 Sum_probs=35.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHH---hHHHHHHHHHhc
Q 043191 97 FGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV---TFTSLIKDLCAE 173 (414)
Q Consensus 97 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~ 173 (414)
+...++.|+.+....++..-...-..++..-.+. +...+..|+. ++++.+.+.|..++.. .++ .+...+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHT----EIVEFLLQLGVPVNDKDDAGWS-PLHIAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCH----HHHHHHHHTTCCSCCCCTTSCC-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcH----HHHHHHHHhCCCCCCcCCCCCC-HHHHHHHc
Confidence 5556677787777777765322111122222232 3333455553 3444555555444321 122 23344455
Q ss_pred CCHHH
Q 043191 174 SRIME 178 (414)
Q Consensus 174 g~~~~ 178 (414)
|+.+-
T Consensus 84 ~~~~~ 88 (231)
T 3aji_A 84 GXDEI 88 (231)
T ss_dssp TCHHH
T ss_pred CHHHH
Confidence 66543
No 344
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=26.02 E-value=5e+02 Score=25.83 Aligned_cols=89 Identities=8% Similarity=-0.011 Sum_probs=47.1
Q ss_pred HHHHHHHhcCC---hhHHHHHHHHHHhCC----CCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHH
Q 043191 95 ILFGCLAKTKH---YDTVLSLFKRLNLTG----LFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLI 167 (414)
Q Consensus 95 ~li~~~~~~~~---~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 167 (414)
.++...|+.|. .++|.+.|+.....+ +.||. -..+...-.+.|..++-..+++.+.... +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 34455555554 345666666654331 34442 2233333345555555555566655542 344445667
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 043191 168 KDLCAESRIMEAAALFTKLRV 188 (414)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~m~~ 188 (414)
.+++-..+.+...++++....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTC
T ss_pred HHhCCCCCHHHHHHHHHHHhC
Confidence 777767776666666665543
No 345
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=24.61 E-value=61 Score=25.46 Aligned_cols=42 Identities=12% Similarity=-0.034 Sum_probs=21.8
Q ss_pred HHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHhhhh
Q 043191 346 LFKRLNSTGLFPDLYT--YNILINCFCKIGRVSSGFVIFGRILP 387 (414)
Q Consensus 346 ~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~ 387 (414)
+.+.+.+.|..++... -.+.+...+..|+...+.++.+.+.+
T Consensus 192 ~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 192 CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555555443221 11223344566777777777776654
No 346
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=24.03 E-value=1.2e+02 Score=21.91 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=50.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhH--HHHHHHHHhc
Q 043191 96 LFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTF--TSLIKDLCAE 173 (414)
Q Consensus 96 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~ 173 (414)
.+...++.|+.+.+..+++.-...-...+..-+ +.+...+..|+. ++++.+.+.|..++.... .+.+...+..
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRV----SVVEYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCC-CHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCCccccccCCC-CHHHHHHHcChH----HHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 344456677776666555431111011121112 334444556663 455556666655443221 1234445566
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChHHHHHHH
Q 043191 174 SRIMEAAALFTKLRVFGCELDVF---TYNTLINGLCRTGHTIVALNLF 218 (414)
Q Consensus 174 g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~ 218 (414)
|+.+-+. .+.+.|..++.. -++. +...+..|+.+-+..++
T Consensus 86 ~~~~~v~----~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll 128 (165)
T 3twr_A 86 GHYEVAE----LLVKHGAVVNVADLWKFTP-LHEAAAKGKYEICKLLL 128 (165)
T ss_dssp TCHHHHH----HHHHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHHHH
T ss_pred CcHHHHH----HHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHHH
Confidence 7766443 344445443321 1222 33345566665444443
No 347
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.00 E-value=99 Score=26.46 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCH
Q 043191 286 FLCLIDGLCKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDL 359 (414)
Q Consensus 286 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~ 359 (414)
...++.-|...|+.++|.+.++++...... ...+...+..++-+ ++ . .-+.+..++..+.+.|+-+..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~-~~--~--~re~~~~Ll~~L~~~~~is~~ 81 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLER-SA--I--AREHMGQLLHQLLCAGHLSTA 81 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTT-CH--H--HHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCC-CH--H--HHHHHHHHHHHHHHCCCCCHH
Confidence 456888899999999999999988642211 12222333333322 21 1 123445588888776655333
No 348
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.99 E-value=2e+02 Score=20.11 Aligned_cols=42 Identities=10% Similarity=-0.139 Sum_probs=20.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 043191 182 LFTKLRVFGCELDVFTYNTLINGLCRTGHTIVALNLFEEMAN 223 (414)
Q Consensus 182 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 223 (414)
+|+.+....+.+++..--.-+......++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444433333333334455666666666665554
No 349
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.85 E-value=7.1e+02 Score=26.13 Aligned_cols=47 Identities=9% Similarity=0.031 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhcCCCCCCCCCHHhHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 043191 49 LEQFLKERCKSSGEGDITSITPNEALCVFDYMLNMRPSRPPVTSFNILFGCLA 101 (414)
Q Consensus 49 l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 101 (414)
+.+.++.+--.++..+ +.+++.++|+.+.+..| .....+-.+++.+-
T Consensus 1106 ~~e~~rd~~~~~~~k~----~~~~~~~~~~~l~~~~P--~~l~~~~~~l~~l~ 1152 (1354)
T 3lxu_X 1106 YAESFRDFQCSQIVKC----ELEMAEKIYNDVVAAHP--KHLQANLLLIQNIE 1152 (1354)
T ss_dssp HHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc----ChHHHHHHHHHHHHHCC--ccHHHHHHHHHhhh
Confidence 4444444433344333 36889999999999887 55666666776655
No 350
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.81 E-value=2.3e+02 Score=21.15 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHhhhhCCCCCC
Q 043191 362 YNILINCFCKIGR-VSSGFVIFGRILPSCFTPD 393 (414)
Q Consensus 362 ~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~ 393 (414)
.+.+..++ ..|+ ...-.++++.+++.|..++
T Consensus 141 ~t~L~~A~-~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 141 YTALIEAV-GLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp CCHHHHHH-HSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHH-HhccchhhHHHHHHHHHHCCCCCC
Confidence 34444443 3443 3333556666666666554
No 351
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=21.36 E-value=1.1e+02 Score=21.47 Aligned_cols=49 Identities=8% Similarity=0.027 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCcchHH
Q 043191 94 NILFGCLAKTKHYDTVLSLFKRLNLTGLFPDRYTYNILINCFCKMGRVSHGF 145 (414)
Q Consensus 94 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 145 (414)
.-.|...+..++.+-|.++++-..+.| +.+.|.+++-.|...=+++.++
T Consensus 36 kDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 36 KDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp SHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 334444455555555555555555443 4445555554444444444443
No 352
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.25 E-value=2.5e+02 Score=22.17 Aligned_cols=57 Identities=16% Similarity=-0.012 Sum_probs=37.4
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHcCCCCCHHh-------HHHHHHHHH--hcCCHHHHHHHHHHHH
Q 043191 131 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVT-------FTSLIKDLC--AESRIMEAAALFTKLR 187 (414)
Q Consensus 131 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~li~~~~--~~g~~~~a~~~~~~m~ 187 (414)
.+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 34455678999998888888888776655332 344444432 5688777777776644
No 353
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.95 E-value=48 Score=23.35 Aligned_cols=51 Identities=10% Similarity=-0.063 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 043191 129 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVTFTSLIKDLCAESRIMEAAAL 182 (414)
Q Consensus 129 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 182 (414)
--.|...+.+++.+-|.++++.+.+.| +...|.+++-.|-..=+.+-++++
T Consensus 36 kDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 36 KDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 334555566666666666666666655 555566666665555555554443
No 354
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.23 E-value=3.1e+02 Score=21.32 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=46.0
Q ss_pred HHHHH---HhcCChhHHHHHHHhchhCCCCCCHhhHHHHHHHHHhcCChhhhhhhhhHHHHHHHHHhCCCCCCHHHH
Q 043191 289 LIDGL---CKISKLKIARELFQSLPRAGLMPNVVTYNILIRGLCNDGQMDETKHYETVFLLFKRLNSTGLFPDLYTY 362 (414)
Q Consensus 289 li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~a~~~~~~m~~~~~~p~~~~~ 362 (414)
+|+++ .+-.+++.|+-.+.+|.+.| .|....-..++-+.-..|.-+- ..+..|...++.....|.+--....
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP-~Al~~a~aa~~a~~~iG~PE~~i~L 91 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNP-AAAARTVNAVLAAEKLGLPEARIPL 91 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCH-HHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 44554 45589999999999999999 7766666777777777765321 1122334466666666654333333
Done!