BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043192
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EBL|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3ED1|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga3
Length = 365
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 158/329 (48%), Gaps = 43/329 (13%)
Query: 17 DGHVHRLVGEEI---IPASLDPTTHVDSKDIIYSSEHNLSARIY---------------- 57
DG R +GE + +PA+ P V S D I L RIY
Sbjct: 37 DGTFERDLGEYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVT 96
Query: 58 -----FPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRRA 112
F + + P++++FHGG+F+ +A S Y + V +K + VSV+YRRA
Sbjct: 97 RPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRA 156
Query: 113 PEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQ-KVILSGDSAGGNIAHHMGIR 171
PE P A++D WTALKWV S + ++++ D Q +V LSGDS+GGNIAHH+ +R
Sbjct: 157 PEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVR 209
Query: 172 QGQEKLEGINIDGICLLFPYFWGSAPIPGEPYVP-EYWTTIIDEP--WQIARPDTSGLDD 228
EG+ + G LL F G+ E + +Y+ T+ D W+ P+ + D
Sbjct: 210 AAD---EGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDH 266
Query: 229 PIINPVA--DPKLSSLGCNRLLVFVAQLDLLRGRGLYYVTKLKESGWKGDAKVSEIMGET 286
P NP +L L + L+ V+ LDL R L Y L+E G KV + T
Sbjct: 267 PACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHH--VKVVQCENAT 324
Query: 287 HVFHLLNPSSLHAIRMLKTTVDFIHGKDY 315
F+LL P+++H +++ DF++ Y
Sbjct: 325 VGFYLL-PNTVHYHEVMEEISDFLNANLY 352
>pdb|2ZSH|A Chain A, Structural Basis Of Gibberellin(Ga3)-Induced Della
Recognition By The Gibberellin Receptor
pdb|2ZSI|A Chain A, Structural Basis Of Gibberellin(Ga4)-Induced Della
Recognition By The Gibberellin Receptor
Length = 351
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 162/320 (50%), Gaps = 36/320 (11%)
Query: 17 DGHVHRLVGEEI---IPASLDPTTHVDSKDIIYSSEHNLSARIYFPNNTNRNQK------ 67
DG +R + E + + A+ +P V S D++ NL +R+Y P ++ Q
Sbjct: 45 DGTFNRHLAEYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDL 104
Query: 68 --------LPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRRAPEDPVPA 119
+P++++FHGG+F +A S Y LV K + VSV+YRRAPE+P P
Sbjct: 105 EKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPC 164
Query: 120 AHEDSWTALKWVASHANGRGPEDWLKTYADFQ-KVILSGDSAGGNIAHHMGIRQGQEKLE 178
A++D W AL WV S + WLK+ D + + L+GDS+GGNIAH++ +R G+
Sbjct: 165 AYDDGWIALNWVNSRS-------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---S 214
Query: 179 GINIDGICLLFPYFWGSAPIPGEPYVP-EYWTTIIDEP--WQIARPDTSGLDDPIINPVA 235
GI++ G LL P F G+ E + +Y+ T+ D W+ P+ + P NP +
Sbjct: 215 GIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFS 274
Query: 236 --DPKLSSLGCNRLLVFVAQLDLLRGRGLYYVTKLKESGWKGDAKVSEIMGETHVFHLLN 293
L + + LV VA LDL+R L Y LK++G + K+ + T F+LL
Sbjct: 275 PRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAG--QEVKLMHLEKATVGFYLL- 331
Query: 294 PSSLHAIRMLKTTVDFIHGK 313
P++ H ++ F++ +
Sbjct: 332 PNNNHFHNVMDEISAFVNAE 351
>pdb|2O7R|A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With
Acyl Adduct
pdb|2O7V|A Chain A, Carboxylesterase Aecxe1 From Actinidia Eriantha Covalently
Inhibited By Paraoxon
Length = 338
Score = 137 bits (345), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 150/297 (50%), Gaps = 23/297 (7%)
Query: 13 IISQDGHVHRLVGEEIIPASLDPTTH--VDSKDIIYSSEHNLSARIYFPNNTNRNQ-KLP 69
+++ D + R + AS DPT+ V +KD+ + HN R++ P + N KLP
Sbjct: 25 VLNPDRTITRPIQIPSTAASPDPTSSSPVLTKDLALNPLHNTFVRLFLPRHALYNSAKLP 84
Query: 70 LVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWTALK 129
LVVYFHGG FI +A S +H + + HA ++ SVDYR APE +PAA++D+ AL+
Sbjct: 85 LVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAPEHRLPAAYDDAMEALQ 144
Query: 130 WVASHANGRGPEDWLKTYADFQKVILSGDSAGGNIAHHMGIRQG--QEKLEGINIDGICL 187
W+ ++WL +ADF + G+SAGGNIA+H G+R ++L + I G+ L
Sbjct: 145 WIKDSR-----DEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVL 199
Query: 188 LFPYFWGSAPIPGEPYVP---EYWTTIIDEPWQIARPDTSGLDDPIINPVADP------- 237
P F GS E + T ++D W+++ P + D NP A+
Sbjct: 200 DEPGFGGSKRTGSELRLANDSRLPTFVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFD 259
Query: 238 KLSSLGCNRLLVFVAQLDLLRGRGLYYVTKLKESGWKGDAKVSEIMGETHVFHLLNP 294
K+ SLG R++V D + R + +L++ G A+ +G H L +P
Sbjct: 260 KIRSLGW-RVMVVGCHGDPMIDRQMELAERLEKKGVDVVAQFD--VGGYHAVKLEDP 313
>pdb|2C7B|A Chain A, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
pdb|2C7B|B Chain B, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
Length = 311
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 121/268 (45%), Gaps = 39/268 (14%)
Query: 40 DSKDI-IYSSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVS 98
+++D+ I S ++ AR+YFP + LP V+Y+HGG F+F S+ H ++ +S
Sbjct: 47 ETRDVHIPVSGGSIRARVYFPK---KAAGLPAVLYYHGGGFVFG---SIETHDHICRRLS 100
Query: 99 H-AKIIAVSVDYRRAPEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQKVILSG 157
+ + VSVDYR APE P A ED++ ALKWVA A+ G D ++ ++G
Sbjct: 101 RLSDSVVVSVDYRLAPEYKFPTAVEDAYAALKWVADRADELG--------VDPDRIAVAG 152
Query: 158 DSAGGNIAHHMGI--RQGQEKLEG--------INIDGICLLFPYFWGSAPIPGEPYVPEY 207
DSAGGN+A + I R EKL +N G+ +G A P
Sbjct: 153 DSAGGNLAAVVSILDRNSGEKLVKKQVLIYPVVNXTGVPTASLVEFGVAETTSLPIELXV 212
Query: 208 WTTIIDEPWQIARPDTSGLDDPIINPVADPKLSSL-GCNRLLVFVAQLDLLRGRGLYYVT 266
W + RP+ + + A P L+ L G LV A+ D LR G Y
Sbjct: 213 WFG----RQYLKRPEEA------YDFKASPLLADLGGLPPALVVTAEYDPLRDEGELYAY 262
Query: 267 KLKESGWKGDAKVSEIMGETHVFHLLNP 294
K K SG + A G H F P
Sbjct: 263 KXKASGSR--AVAVRFAGXVHGFVSFYP 288
>pdb|2YH2|A Chain A, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|B Chain B, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|C Chain C, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|D Chain D, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|3ZWQ|A Chain A, Hyperthermophilic Esterase From The Archeon Pyrobaculum
Calidifontis
pdb|3ZWQ|B Chain B, Hyperthermophilic Esterase From The Archeon Pyrobaculum
Calidifontis
Length = 313
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 109/234 (46%), Gaps = 28/234 (11%)
Query: 52 LSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRR 111
+ AR+Y P + ++LP VVY+HGG F+ + T+ L + + + VSVDYR
Sbjct: 63 IRARVYRPRD---GERLPAVVYYHGGGFVLGSV--ETHDHVCRRLANLSGAVVVSVDYRL 117
Query: 112 APEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQKVILSGDSAGGNIAHHMGIR 171
APE PAA ED++ A KWVA +++ K D K+ ++GDSAGGN+A I
Sbjct: 118 APEHKFPAAVEDAYDAAKWVA--------DNYDKLGVDNGKIAVAGDSAGGNLAAVTAI- 168
Query: 172 QGQEKLEGINIDGICLLFPYFWGSAPIPGEPYV-------PEYWTTIIDEPWQIARPDTS 224
+++ E + L++P + + G P V PEY D R S
Sbjct: 169 MARDRGESF-VKYQVLIYP----AVNLTGSPTVSRVEYSGPEYVILTADLMAWFGRQYFS 223
Query: 225 GLDDPIINPVADPKLSSLG-CNRLLVFVAQLDLLRGRGLYYVTKLKESGWKGDA 277
D ++P A P + L LV A+ D LR G Y LK G + A
Sbjct: 224 KPQDA-LSPYASPIFADLSNLPPALVITAEYDPLRDEGELYAHLLKTRGVRAVA 276
>pdb|3AIN|A Chain A, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|B Chain B, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|C Chain C, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|D Chain D, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 16/150 (10%)
Query: 31 ASLDPTTHVDS-KDI-IYSSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLT 88
+SL P V +DI I SE N+ AR+Y+P ++VY+HGG F+ + S
Sbjct: 54 SSLTPREEVGKIEDITIPGSETNIKARVYYPKTQG---PYGVLVYYHGGGFVLGDIES-- 108
Query: 89 YHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYA 148
Y + + + + +SVDYR APE+ PAA DS+ ALKWV +++ E + Y
Sbjct: 109 YDPLCRAITNSCQCVTISVDYRLAPENKFPAAVVDSFDALKWVYNNS-----EKFNGKYG 163
Query: 149 DFQKVILSGDSAGGNIAHHMGIRQGQEKLE 178
+ + GDSAGGN+A I +E ++
Sbjct: 164 ----IAVGGDSAGGNLAAVTAILSKKENIK 189
>pdb|3AIM|A Chain A, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|B Chain B, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|C Chain C, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|D Chain D, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 16/150 (10%)
Query: 31 ASLDPTTHVDS-KDI-IYSSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLT 88
+SL P V +DI I SE N+ AR+Y+P ++VY+HGG F+ + S
Sbjct: 54 SSLTPREEVGKIEDITIPGSETNIKARVYYPKTQG---PYGVLVYYHGGGFVLGDIES-- 108
Query: 89 YHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYA 148
Y + + + + +SVDYR APE+ PAA DS+ ALKWV +++ E + Y
Sbjct: 109 YDPLCRAITNSCQCVTISVDYRLAPENKFPAAVVDSFDALKWVYNNS-----EKFNGKYG 163
Query: 149 DFQKVILSGDSAGGNIAHHMGIRQGQEKLE 178
+ + GDSAGGN+A I +E ++
Sbjct: 164 ----IAVGGDSAGGNLAAVTAILSKKENIK 189
>pdb|3AIO|A Chain A, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|B Chain B, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|C Chain C, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|D Chain D, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 16/150 (10%)
Query: 31 ASLDPTTHVDS-KDI-IYSSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLT 88
+SL P V +DI I SE N+ AR+Y+P ++VY+HGG F+ + S
Sbjct: 54 SSLTPREEVGKIEDITIPGSETNIKARVYYPKTQG---PYGVLVYYHGGGFVLGDIES-- 108
Query: 89 YHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYA 148
Y + + + + +SVDYR APE+ PAA DS+ ALKWV +++ E + Y
Sbjct: 109 YDPLCRAITNSCQCVTISVDYRLAPENKFPAAVVDSFDALKWVYNNS-----EKFNGKYG 163
Query: 149 DFQKVILSGDSAGGNIAHHMGIRQGQEKLE 178
+ + GDSAGGN+A I +E ++
Sbjct: 164 ----IAVGGDSAGGNLAAVTAILSKKENIK 189
>pdb|3AIK|A Chain A, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|B Chain B, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|C Chain C, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|D Chain D, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIL|A Chain A, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|B Chain B, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|C Chain C, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|D Chain D, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
Length = 323
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 16/150 (10%)
Query: 31 ASLDPTTHVDS-KDI-IYSSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLT 88
+SL P V +DI I SE N+ AR+Y+P ++VY+HGG F+ + S
Sbjct: 54 SSLTPREEVGKIEDITIPGSETNIKARVYYPKTQG---PYGVLVYYHGGGFVLGDIES-- 108
Query: 89 YHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYA 148
Y + + + + +SVDYR APE+ PAA DS+ ALKWV +++ E + Y
Sbjct: 109 YDPLCRAITNSCQCVTISVDYRLAPENKFPAAVVDSFDALKWVYNNS-----EKFNGKYG 163
Query: 149 DFQKVILSGDSAGGNIAHHMGIRQGQEKLE 178
+ + GDSAGGN+A I +E ++
Sbjct: 164 ----IAVGGDSAGGNLAAVTAILSKKENIK 189
>pdb|1QZ3|A Chain A, Crystal Structure Of Mutant M211sR215L OF CARBOXYLESTERASE
Est2 Complexed With Hexadecanesulfonate
pdb|1U4N|A Chain A, Crystal Structure Analysis Of The M211sR215L EST2 MUTANT
Length = 310
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 115/277 (41%), Gaps = 23/277 (8%)
Query: 30 PASLDPTTHVDSKDIIYSSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTY 89
P +P V D+ L R+Y P P +VY+HGG ++ + T+
Sbjct: 39 PVKKEPVAEVREFDMDLPG-RTLKVRMYRPEGVE--PPYPALVYYHGGGWVVGDL--ETH 93
Query: 90 HAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYAD 149
L + + SVDYR APE PAA ED++ AL+W+A A + D
Sbjct: 94 DPVCRVLAKDGRAVVFSVDYRLAPEHKFPAAVEDAYDALQWIAERAA--------DFHLD 145
Query: 150 FQKVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLFP---YFWGSAPIPGEPYVPE 206
++ + GDSAGGN+A I + G + L++P Y P E
Sbjct: 146 PARIAVGGDSAGGNLAAVTSILAKERG--GPALAFQLLIYPSTGYDPAHPPASIEENAEG 203
Query: 207 YWTTIIDEPWQIARPDTS--GLDDPIINPVADPKLSSLGCNRLLVFVAQLDLLRGRGLYY 264
Y T W + + S L P +PV P LS G + AQ D LR G Y
Sbjct: 204 YLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLS--GLPPAYIATAQYDPLRDVGKLY 261
Query: 265 VTKLKESGWKGDAK-VSEIMGETHVFHLLNPSSLHAI 300
L ++G K + + +++ F+ L+P + A+
Sbjct: 262 AEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKAL 298
>pdb|2HM7|A Chain A, Crystal Structure Analysis Of The G84s Est2 Mutant
Length = 310
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 115/277 (41%), Gaps = 23/277 (8%)
Query: 30 PASLDPTTHVDSKDIIYSSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTY 89
P +P V D+ L R+Y P P +VY+HGG+++ + T+
Sbjct: 39 PVKKEPVAEVREFDMDLPG-RTLKVRMYRPEGVE--PPYPALVYYHGGSWVVGDL--ETH 93
Query: 90 HAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYAD 149
L + + SVDYR APE PAA ED++ AL+W+A A + D
Sbjct: 94 DPVCRVLAKDGRAVVFSVDYRLAPEHKFPAAVEDAYDALQWIAERAA--------DFHLD 145
Query: 150 FQKVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLFP---YFWGSAPIPGEPYVPE 206
++ + GDSAGGN+A I + G + L++P Y P E
Sbjct: 146 PARIAVGGDSAGGNLAAVTSILAKERG--GPALAFQLLIYPSTGYDPAHPPASIEENAEG 203
Query: 207 YWTTIIDEPWQIARPDTS--GLDDPIINPVADPKLSSLGCNRLLVFVAQLDLLRGRGLYY 264
Y T W + S L P +PV P LS G + AQ D LR G Y
Sbjct: 204 YLLTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDLS--GLPPAYIATAQYDPLRDVGKLY 261
Query: 265 VTKLKESGWKGDAK-VSEIMGETHVFHLLNPSSLHAI 300
L ++G K + + +++ F+ L+P + A+
Sbjct: 262 AEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKAL 298
>pdb|1EVQ|A Chain A, The Crystal Structure Of The Thermophilic Carboxylesterase
Est2 From Alicyclobacillus Acidocaldarius
Length = 310
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 112/277 (40%), Gaps = 23/277 (8%)
Query: 30 PASLDPTTHVDSKDIIYSSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTY 89
P +P V D L R Y P P +VY+HGG ++ + T+
Sbjct: 39 PVKKEPVAEVREFDXDLPG-RTLKVRXYRPEGVE--PPYPALVYYHGGGWVVGDL--ETH 93
Query: 90 HAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYAD 149
L + + SVDYR APE PAA ED++ AL+W+A A + D
Sbjct: 94 DPVCRVLAKDGRAVVFSVDYRLAPEHKFPAAVEDAYDALQWIAERAA--------DFHLD 145
Query: 150 FQKVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLFP---YFWGSAPIPGEPYVPE 206
++ + GDSAGGN+A I + G + L++P Y P E
Sbjct: 146 PARIAVGGDSAGGNLAAVTSILAKERG--GPALAFQLLIYPSTGYDPAHPPASIEENAEG 203
Query: 207 YWTTIIDEPWQIARPDTS--GLDDPIINPVADPKLSSLGCNRLLVFVAQLDLLRGRGLYY 264
Y T W + S L P +PV P LS G + AQ D LR G Y
Sbjct: 204 YLLTGGXXLWFRDQYLNSLEELTHPWFSPVLYPDLS--GLPPAYIATAQYDPLRDVGKLY 261
Query: 265 VTKLKESGWKGDAK-VSEIMGETHVFHLLNPSSLHAI 300
L ++G K + + +++ F+ L+P + A+
Sbjct: 262 AEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKAL 298
>pdb|1JJI|A Chain A, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|B Chain B, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|C Chain C, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|D Chain D, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
Length = 311
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 94/224 (41%), Gaps = 19/224 (8%)
Query: 69 PLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWTAL 128
P++VY+HGG F+ + S + A + + VSVDYR APE PAA D + A
Sbjct: 80 PVLVYYHGGGFVICSIES--HDALCRRIARLSNSTVVSVDYRLAPEHKFPAAVYDCYDAT 137
Query: 129 KWVASHANGRGPEDWLKTYADFQKVILSGDSAGGNIAHHMGI--RQGQEKLEGINIDGIC 186
KWVA +A + D K+ + GDSAGGN+A + I R E I
Sbjct: 138 KWVAENAE--------ELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDF----IKHQI 185
Query: 187 LLFPYFWGSAPIPGEPYVPEYWTTIIDEPWQIARPDTSGLDDPIINPVADPKLSSL-GCN 245
L++P AP P E + + ++ NP+A + L
Sbjct: 186 LIYPVVNFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLP 245
Query: 246 RLLVFVAQLDLLRGRGLYYVTKLKESGWKGDAKVSEIMGETHVF 289
L+ A+ D LR G + L+ +G +A + G H F
Sbjct: 246 PALIITAEYDPLRDEGEVFGQMLRRAGV--EASIVRYRGVLHGF 287
>pdb|1JKM|B Chain B, Brefeldin A Esterase, A Bacterial Homologue Of Human
Hormone Sensitive Lipase
pdb|1JKM|A Chain A, Brefeldin A Esterase, A Bacterial Homologue Of Human
Hormone Sensitive Lipase
Length = 361
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 100/252 (39%), Gaps = 35/252 (13%)
Query: 68 LPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRRA----PEDPVPAAHED 123
LP +VY HGG + + + L + ++ V VD+R A P P+ ED
Sbjct: 109 LPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVV-VMVDFRNAWTAEGHHPFPSGVED 167
Query: 124 SWTALKWVASHANGRGPEDWLKTYADFQKVILSGDSAGGNIA---HHMGIRQGQEKLEGI 180
A+ WV H G V++ G+S GGN+A + R+G+
Sbjct: 168 CLAAVLWVDEHRESLG----------LSGVVVQGESGGGNLAIATTLLAKRRGRLD---- 213
Query: 181 NIDGICLLFPYFWGSAPIPGEPYVPEYWTTIIDEPWQIAR-----------PDTSGLDDP 229
IDG+ PY G E + E + + ++ + I P +DP
Sbjct: 214 AIDGVYASIPYISGGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDP 273
Query: 230 IINPVADPKLSSLGCNRLLVFVAQLDLLRGRGLYYVTKLKESGWKGDAKVS--EIMGETH 287
I P + G +V V +LD LR G+ + +L +G A+V+ + G
Sbjct: 274 IAWPYFASEDELRGLPPFVVAVNELDPLRDEGIAFARRLARAGVDVAARVNIGLVHGADV 333
Query: 288 VFHLLNPSSLHA 299
+F P++L +
Sbjct: 334 IFRHWLPAALES 345
>pdb|3DNM|A Chain A, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|B Chain B, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|C Chain C, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|D Chain D, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
Length = 336
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 16/108 (14%)
Query: 71 VVYFHGGAFIFENAFSLTYHAYMNT-LVSHAKIIAVSVDYRRAPEDPVPAAHEDSWTALK 129
++YFHGG +I + S + H + T L + S+DYR APE+P PAA +D A +
Sbjct: 97 ILYFHGGGYI---SGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENPFPAAVDDCVAAYR 153
Query: 130 WVASHANGRGPEDWLKTYADFQKVILSGDSAGGNIAHHMGIRQGQEKL 177
+ LKT ++I++GDSAGG + ++ ++ L
Sbjct: 154 AL------------LKTAGSADRIIIAGDSAGGGLTTASMLKAKEDGL 189
>pdb|3K6K|A Chain A, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|B Chain B, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|C Chain C, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|D Chain D, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
Length = 322
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 16/108 (14%)
Query: 71 VVYFHGGAFIFENAFSLTYHAYMNT-LVSHAKIIAVSVDYRRAPEDPVPAAHEDSWTALK 129
++YFHGG +I + S + H + T L + S+DYR APE+P PAA +D A +
Sbjct: 83 ILYFHGGGYI---SGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENPFPAAVDDCVAAYR 139
Query: 130 WVASHANGRGPEDWLKTYADFQKVILSGDSAGGNIAHHMGIRQGQEKL 177
+ LKT ++I++GDSAGG + ++ ++ L
Sbjct: 140 AL------------LKTAGSADRIIIAGDSAGGGLTTASMLKAKEDGL 175
>pdb|3QH4|A Chain A, Crystal Structure Of Esterase Lipw From Mycobacterium
Marinum
Length = 317
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 69 PLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWTAL 128
P+VVY H G F N T H L A+ VSVDYR APE P PAA D+ L
Sbjct: 86 PVVVYCHAGGFALGNLD--TDHRQCLELARRARCAVVSVDYRLAPEHPYPAALHDAIEVL 143
Query: 129 KWVASHANGRG 139
WV +A G
Sbjct: 144 TWVVGNATRLG 154
>pdb|1THG|A Chain A, 1.8 Angstroms Refined Structure Of The Lipase From
Geotrichum Candidum
Length = 544
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 26/193 (13%)
Query: 5 AHNFAPFFIISQDGHVHRLVGE-----EIIPASLDPTTHVDSKDIIYSSEHNLSARIYFP 59
A++F+P + G+ L+ + ++IP + +K + +E L ++ P
Sbjct: 54 ANDFSPACMQLDPGNSLTLLDKALGLAKVIPEEFRGPLYDMAKGTVSMNEDCLYLNVFRP 113
Query: 60 NNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAK-IIAVSVDYRRAP----- 113
T + KLP++V+ +GGAF++ ++ + ++Y+ ++ + ++ VS++YR P
Sbjct: 114 AGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLG 173
Query: 114 ------EDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQKVILSGDSAGG-NIAH 166
E A D L+WV+ + G D KV++ G+SAG ++AH
Sbjct: 174 GDAITAEGNTNAGLHDQRKGLEWVSDNIANFG--------GDPDKVMIFGESAGAMSVAH 225
Query: 167 HMGIRQGQEKLEG 179
+ G G
Sbjct: 226 QLIAYGGDNTYNG 238
>pdb|3FAK|A Chain A, Structural And Functional Analysis Of A Hormone-Sensitive
Lipase Like Este5 From A Metagenome Library
pdb|3G9T|A Chain A, Crystal Structure Of Este5, Was Soaked By P-Nitrophenyl
Butyrate For 5sec
pdb|3G9U|A Chain A, Crystal Structure Of Este5, Was Soaked By P-nitrophenyl
Butyrate For 5min
pdb|3G9Z|A Chain A, Crystal Structure Of Este5, Was Soaked By P-Nitrophenyl
Caprylate
pdb|3H17|A Chain A, Crystal Structure Of Este5-Pmsf (I)
pdb|3H18|A Chain A, Crystal Structure Of Este5-pmsf (ii)
pdb|3H19|A Chain A, Crystal Structure Of Este5, Was Soaked By Methyl Alcohol
pdb|3H1A|A Chain A, Crystal Structure Of Este5, Was Soaked By Ethyl Alcohol
pdb|3H1B|A Chain A, Crystal Structure Of Este5, Was Soaked By Isopropyl
Alcohol
pdb|3L1H|A Chain A, Crystal Structure Of Este5, Was Soaked By Fecl3
pdb|3L1I|A Chain A, Crystal Structure Of Este5, Was Soaked By Cuso4
pdb|3L1J|A Chain A, Crystal Structure Of Este5, Was Soaked By Znso4
Length = 322
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 71 VVYFHGGAFIFENAFSLTYHAYMNTLVSHA-KIIAVSVDYRRAPEDPVPAAHEDSWTALK 129
++Y HGG ++ S+ H M +S A + A+ +DYR APE P PAA ED A +
Sbjct: 83 ILYLHGGGYVMG---SINTHRSMVGEISRASQAAALLLDYRLAPEHPFPAAVEDGVAAYR 139
Query: 130 WVASHANGRGPEDWLKTYADFQKVILSGDSAGGNI 164
W+ G P Q + +SGDSAGG +
Sbjct: 140 WLLDQ--GFKP----------QHLSISGDSAGGGL 162
>pdb|3V9A|A Chain A, Crystal Structure Of EsteraseLIPASE FROM UNCULTURED
BACTERIUM
Length = 309
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 71 VVYFHGGAFIFENAFSLTYHAYMNTLVSHA-KIIAVSVDYRRAPEDPVPAAHEDSWTALK 129
++Y HGG ++ S+ H M +S A + A+ +DYR APE P PAA ED A +
Sbjct: 70 ILYLHGGGYVMG---SINTHRSMVGEISRASQAAALLLDYRLAPEHPFPAAVEDGVAAYR 126
Query: 130 WVASHANGRGPEDWLKTYADFQKVILSGDSAGGNI 164
W+ G P Q + +SGDSAGG +
Sbjct: 127 WLLDQ--GFKP----------QHLSISGDSAGGGL 149
>pdb|1LZK|A Chain A, Bacterial Heroin Esterase Complex With Transition State
Analog Dimethylarsenic Acid
Length = 323
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 90/229 (39%), Gaps = 28/229 (12%)
Query: 55 RIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRRAPE 114
+I F N +P++++ HGG F A S + + +V+YR APE
Sbjct: 66 KIRFVTPDNTAGPVPVLLWIHGGGFAIGTAES--SDPFCVEVARELGFAVANVEYRLAPE 123
Query: 115 DPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQKVILSGDSAGGNIAHHMGIRQGQ 174
P D + AL ++ +HA G D ++ + G SAGG +A ++
Sbjct: 124 TTFPGPVNDCYAALLYIHAHAEELG--------IDPSRIAVGGQSAGGGLAAGTVLKARD 175
Query: 175 EKLEGINI---------DGICLLFPYFWGSAPIPGEPYVPEYWTTIIDEPWQIARPDTSG 225
E + + D + + + P+ P W + E + SG
Sbjct: 176 EGVVPVAFQFLEIPELDDRLETVSXTNFVDTPLWHRPNAILSWKYYLGESY-------SG 228
Query: 226 LDDPIINPVADPKLSS--LGCNRLLVFVAQLDLLRGRGLYYVTKLKESG 272
+DP ++ A P ++ G + +LD LR G+ Y +L ++G
Sbjct: 229 PEDPDVSIYAAPSRATDLTGLPPTYLSTXELDPLRDEGIEYALRLLQAG 277
>pdb|1LZL|A Chain A, Bacterial Heroin Esterase
Length = 323
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 91/237 (38%), Gaps = 44/237 (18%)
Query: 55 RIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRRAPE 114
+I F N +P++++ HGG F A S + + +V+YR APE
Sbjct: 66 KIRFVTPDNTAGPVPVLLWIHGGGFAIGTAES--SDPFCVEVARELGFAVANVEYRLAPE 123
Query: 115 DPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQKVILSGDSAGGNIA--------- 165
P D + AL ++ +HA G D ++ + G SAGG +A
Sbjct: 124 TTFPGPVNDCYAALLYIHAHAEELG--------IDPSRIAVGGQSAGGGLAAGTVLKARD 175
Query: 166 --------HHMGIRQGQEKLEGINIDGICLLFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
+ I + ++LE +++ P+ P W + E +
Sbjct: 176 EGVVPVAFQFLEIPELDDRLETVSMTNFV--------DTPLWHRPNAILSWKYYLGESY- 226
Query: 218 IARPDTSGLDDPIINPVADPKLSS--LGCNRLLVFVAQLDLLRGRGLYYVTKLKESG 272
SG +DP ++ A P ++ G + +LD LR G+ Y +L ++G
Sbjct: 227 ------SGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDPLRDEGIEYALRLLQAG 277
>pdb|1C7I|A Chain A, Thermophylic Pnb Esterase
Length = 489
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 23/132 (17%)
Query: 42 KDIIYSSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAK 101
K++ SE L ++ P+ ++N LP++V+ HGGAF Y + L + +
Sbjct: 73 KELPRQSEDCLYVNVFAPDTPSQN--LPVMVWIHGGAFYLGAGSEPLYDG--SKLAAQGE 128
Query: 102 IIAVSVDYRRAP-----EDPVPAAHEDSW------TALKWVASHANGRGPEDWLKTYADF 150
+I V+++YR P A+ D+ ALKWV + + G D
Sbjct: 129 VIVVTLNYRLGPFGFMHLSSFDEAYSDNLGLLDQAAALKWVRENISAFG--------GDP 180
Query: 151 QKVILSGDSAGG 162
V + G+SAGG
Sbjct: 181 DNVTVFGESAGG 192
>pdb|1K4Y|A Chain A, Crystal Structure Of Rabbit Liver Carboxylesterase In
Complex With 4- Piperidino-Piperidine
Length = 534
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 23/156 (14%)
Query: 48 SEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSV 107
SE L IY P + + +LP++V+ HGG + A TY L +H ++ V++
Sbjct: 91 SEDCLYLNIYTPADLTKRGRLPVMVWIHGGGLMVGGAS--TYDGL--ALSAHENVVVVTI 146
Query: 108 DYRRA---------PEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQKVILSGD 158
YR H D AL+WV + G D V + G+
Sbjct: 147 QYRLGIWGFFSTGDEHSRGNWGHLDQVAALRWVQDNIANFG--------GDPGSVTIFGE 198
Query: 159 SAGGNIAHHMGIRQGQEKL--EGINIDGICLLFPYF 192
SAGG + + + L I+ G+ LL F
Sbjct: 199 SAGGQSVSILLLSPLTKNLFHRAISESGVALLSSLF 234
>pdb|1QE3|A Chain A, Pnb Esterase
Length = 489
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 23/127 (18%)
Query: 47 SSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVS 106
SE L ++ P+ ++N LP++V+ HGGAF Y + L + ++I V+
Sbjct: 78 QSEDCLYVNVFAPDTPSQN--LPVMVWIHGGAFYLGAGSEPLYDG--SKLAAQGEVIVVT 133
Query: 107 VDYRRAP-----EDPVPAAHEDSW------TALKWVASHANGRGPEDWLKTYADFQKVIL 155
++YR P A+ D+ ALKWV + + G D V +
Sbjct: 134 LNYRLGPFGFLHLSSFDEAYSDNLGLLDQAAALKWVRENISAFG--------GDPDNVTV 185
Query: 156 SGDSAGG 162
G+SAGG
Sbjct: 186 FGESAGG 192
>pdb|1C7J|A Chain A, Pnb Esterase 56c8
Length = 489
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 23/126 (18%)
Query: 48 SEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSV 107
SE L ++ P+ ++N LP++V+ HGGAF Y + L + ++I V++
Sbjct: 79 SEDCLYVNVFAPDTPSQN--LPVMVWIHGGAFYLGAGSEPLYDG--SKLAAQGEVIVVTL 134
Query: 108 DYRRAP-----EDPVPAAHEDSW------TALKWVASHANGRGPEDWLKTYADFQKVILS 156
+YR P A+ D+ ALKWV + + G D V +
Sbjct: 135 NYRLGPFGFMHLSSFDEAYSDNLGLLDQAAALKWVRENISAFG--------GDPDNVTVF 186
Query: 157 GDSAGG 162
G+SAGG
Sbjct: 187 GESAGG 192
>pdb|1YA4|A Chain A, Crystal Structure Of Human Liver Carboxylesterase 1 In
Complex With Tamoxifen
pdb|1YA4|B Chain B, Crystal Structure Of Human Liver Carboxylesterase 1 In
Complex With Tamoxifen
pdb|1YA4|C Chain C, Crystal Structure Of Human Liver Carboxylesterase 1 In
Complex With Tamoxifen
pdb|1YA8|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Cleavage Products Of Mevastatin
pdb|1YA8|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Cleavage Products Of Mevastatin
pdb|1YA8|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Cleavage Products Of Mevastatin
pdb|1YAH|A Chain A, Crystal Structure Of Human Liver Carboxylesterase
Complexed To Etyl Acetate; A Fatty Acid Ethyl Ester
Analogue
pdb|1YAH|B Chain B, Crystal Structure Of Human Liver Carboxylesterase
Complexed To Etyl Acetate; A Fatty Acid Ethyl Ester
Analogue
pdb|1YAH|C Chain C, Crystal Structure Of Human Liver Carboxylesterase
Complexed To Etyl Acetate; A Fatty Acid Ethyl Ester
Analogue
pdb|1YAJ|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|D Chain D, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|E Chain E, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|F Chain F, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|G Chain G, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|H Chain H, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|I Chain I, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|J Chain J, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|K Chain K, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|L Chain L, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|2HRQ|A Chain A, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
In Covalent Complex With The Nerve Agent Soman (gd)
pdb|2HRQ|B Chain B, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
In Covalent Complex With The Nerve Agent Soman (gd)
pdb|2HRQ|C Chain C, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
In Covalent Complex With The Nerve Agent Soman (gd)
pdb|2HRQ|D Chain D, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
In Covalent Complex With The Nerve Agent Soman (gd)
pdb|2HRQ|E Chain E, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
In Covalent Complex With The Nerve Agent Soman (gd)
pdb|2HRQ|F Chain F, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
In Covalent Complex With The Nerve Agent Soman (gd)
pdb|2HRR|A Chain A, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
In Covalent Complex With The Nerve Agent Tabun (Ga)
pdb|2HRR|B Chain B, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
In Covalent Complex With The Nerve Agent Tabun (Ga)
pdb|2HRR|C Chain C, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
In Covalent Complex With The Nerve Agent Tabun (Ga)
pdb|4AB1|A Chain A, Recombinant Human Carboxylesterase 1 From Whole Cabbage
Loopers
Length = 532
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 48 SEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSV 107
SE L IY P + + +LP++V+ HGG + A TY L +H ++ V++
Sbjct: 93 SEDCLYLNIYTPADLTKKNRLPVMVWIHGGGLMVGAAS--TYDGL--ALAAHENVVVVTI 148
Query: 108 DYRRA---------PEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQKVILSGD 158
YR H D AL+WV + G + V + G+
Sbjct: 149 QYRLGIWGFFSTGDEHSRGNWGHLDQVAALRWVQDNIASFG--------GNPGSVTIFGE 200
Query: 159 SAGGN 163
SAGG
Sbjct: 201 SAGGE 205
>pdb|3K9B|A Chain A, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
In Covalent Complex With The Nerve Agent Cyclosarin (Gf)
pdb|3K9B|B Chain B, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
In Covalent Complex With The Nerve Agent Cyclosarin (Gf)
pdb|3K9B|C Chain C, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
In Covalent Complex With The Nerve Agent Cyclosarin (Gf)
Length = 529
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 48 SEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSV 107
SE L IY P + + +LP++V+ HGG + A TY L +H ++ V++
Sbjct: 90 SEDCLYLNIYTPADLTKKNRLPVMVWIHGGGLMVGAAS--TYDGL--ALAAHENVVVVTI 145
Query: 108 DYRRA---------PEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQKVILSGD 158
YR H D AL+WV + G + V + G+
Sbjct: 146 QYRLGIWGFFSTGDEHSRGNWGHLDQVAALRWVQDNIASFG--------GNPGSVTIFGE 197
Query: 159 SAGGN 163
SAGG
Sbjct: 198 SAGGE 202
>pdb|1MX1|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Tacrine
pdb|1MX1|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Tacrine
pdb|1MX1|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Tacrine
pdb|1MX1|D Chain D, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Tacrine
pdb|1MX1|E Chain E, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Tacrine
pdb|1MX1|F Chain F, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Tacrine
pdb|1MX5|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Homatropine, A Cocaine Analogue
pdb|1MX5|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Homatropine, A Cocaine Analogue
pdb|1MX5|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Homatropine, A Cocaine Analogue
pdb|1MX5|D Chain D, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Homatropine, A Cocaine Analogue
pdb|1MX5|E Chain E, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Homatropine, A Cocaine Analogue
pdb|1MX5|F Chain F, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Homatropine, A Cocaine Analogue
pdb|1MX9|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|D Chain D, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|E Chain E, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|F Chain F, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|G Chain G, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|H Chain H, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|I Chain I, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|J Chain J, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|K Chain K, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|L Chain L, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
Length = 548
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 48 SEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSV 107
SE L IY P + + +LP++V+ HGG + A TY L +H ++ V++
Sbjct: 95 SEDCLYLNIYTPADLTKKNRLPVMVWIHGGGLMVGAAS--TYDGL--ALAAHENVVVVTI 150
Query: 108 DYRRA---------PEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQKVILSGD 158
YR H D AL+WV + G + V + G+
Sbjct: 151 QYRLGIWGFFSTGDEHSRGNWGHLDQVAALRWVQDNIASFG--------GNPGSVTIFGE 202
Query: 159 SAGGN 163
SAGG
Sbjct: 203 SAGGE 207
>pdb|2DQY|A Chain A, Crystal Structure Of Human Carboxylesterase In Complex
With Cholate And Palmitate
pdb|2DQY|B Chain B, Crystal Structure Of Human Carboxylesterase In Complex
With Cholate And Palmitate
pdb|2DQY|C Chain C, Crystal Structure Of Human Carboxylesterase In Complex
With Cholate And Palmitate
pdb|2DQZ|A Chain A, Crystal Structure Of Human Carboxylesterase In Complex
With Homatropine, Coenzyme A, And Palmitate
pdb|2DQZ|B Chain B, Crystal Structure Of Human Carboxylesterase In Complex
With Homatropine, Coenzyme A, And Palmitate
pdb|2DQZ|C Chain C, Crystal Structure Of Human Carboxylesterase In Complex
With Homatropine, Coenzyme A, And Palmitate
pdb|2DR0|A Chain A, Crystal Structure Of Human Carboxylesterase In Complex
With Taurocholate
pdb|2DR0|B Chain B, Crystal Structure Of Human Carboxylesterase In Complex
With Taurocholate
pdb|2DR0|C Chain C, Crystal Structure Of Human Carboxylesterase In Complex
With Taurocholate
pdb|2H7C|A Chain A, Crystal Structure Of Human Carboxylesterase In Complex
With Coenzyme A
pdb|2H7C|B Chain B, Crystal Structure Of Human Carboxylesterase In Complex
With Coenzyme A
pdb|2H7C|C Chain C, Crystal Structure Of Human Carboxylesterase In Complex
With Coenzyme A
pdb|2H7C|D Chain D, Crystal Structure Of Human Carboxylesterase In Complex
With Coenzyme A
pdb|2H7C|E Chain E, Crystal Structure Of Human Carboxylesterase In Complex
With Coenzyme A
pdb|2H7C|F Chain F, Crystal Structure Of Human Carboxylesterase In Complex
With Coenzyme A
Length = 542
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 48 SEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSV 107
SE L IY P + + +LP++V+ HGG + A TY L +H ++ V++
Sbjct: 95 SEDCLYLNIYTPADLTKKNRLPVMVWIHGGGLMVGAAS--TYDGL--ALAAHENVVVVTI 150
Query: 108 DYRRA---------PEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQKVILSGD 158
YR H D AL+WV + G + V + G+
Sbjct: 151 QYRLGIWGFFSTGDEHSRGNWGHLDQVAALRWVQDNIASFG--------GNPGSVTIFGE 202
Query: 159 SAGGN 163
SAGG
Sbjct: 203 SAGGE 207
>pdb|2FJ0|A Chain A, Crystal Structure Of Juvenile Hormone Esterase From
Manduca Sexta, With Otfp Covalently Attached
Length = 551
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 24/128 (18%)
Query: 61 NTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYR---------R 111
+ NR LP++V+ HGG F F + S + LVS +I ++ +YR
Sbjct: 108 DKNRFAGLPVLVFIHGGGFAFGSGDSDLHGP--EYLVSK-DVIVITFNYRLNVYGFLSLN 164
Query: 112 APEDPVPAAHEDSWTALKWVASHAN--GRGPEDWLKTYADFQKVILSGDSAGGNIAHHMG 169
+ P A D T LKWV +A+ G P+D V L G SAG H +
Sbjct: 165 STSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDD----------VTLMGQSAGAAATHILS 214
Query: 170 IRQGQEKL 177
+ + + L
Sbjct: 215 LSKAADGL 222
>pdb|2BCE|A Chain A, Cholesterol Esterase From Bos Taurus
Length = 579
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 41 SKDIIYSSEHNLSARIYFPNNTNR-NQKLPLVVYFHGGAFIF---ENAFSLTYHAY-MNT 95
++D Y +E L I+ P + LP++++ +GGAF+ + A L+ + Y
Sbjct: 70 TQDSTYGNEDCLYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEE 129
Query: 96 LVSHAKIIAVSVDYRRAP-------EDPVPAAHE--DSWTALKWVASHANGRGPEDWLKT 146
+ + +I V+ +YR P + +P + D A+ WV + G
Sbjct: 130 IATRGNVIVVTFNYRVGPLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFG------- 182
Query: 147 YADFQKVILSGDSAGG 162
D ++ L G+SAGG
Sbjct: 183 -GDPDQITLFGESAGG 197
>pdb|1AKN|A Chain A, Structure Of Bile-salt Activated Lipase
Length = 579
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 22/136 (16%)
Query: 41 SKDIIYSSEHNLSARIYFPNNTNR-NQKLPLVVYFHGGAFIF---ENAFSLTYHAY-MNT 95
++D Y +E L I+ P + LP++++ +GGAF+ + A L+ + Y
Sbjct: 70 TQDSTYGNEDCLYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEE 129
Query: 96 LVSHAKIIAVSVDYRRAP-------EDPVPAAHE--DSWTALKWVASHANGRGPEDWLKT 146
+ + +I V+ +YR P + +P + D A+ WV + G
Sbjct: 130 IATRGNVIVVTFNYRVGPLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFG------- 182
Query: 147 YADFQKVILSGDSAGG 162
D + L G+SAGG
Sbjct: 183 -GDPDNITLFGESAGG 197
>pdb|1AQL|A Chain A, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
pdb|1AQL|B Chain B, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
Length = 532
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 22/136 (16%)
Query: 41 SKDIIYSSEHNLSARIYFPNNTNR-NQKLPLVVYFHGGAFIF---ENAFSLTYHAY-MNT 95
++D Y +E L I+ P + LP++++ +GGAF+ + A L+ + Y
Sbjct: 70 TQDSTYGNEDCLYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEE 129
Query: 96 LVSHAKIIAVSVDYRRAP-------EDPVPAAHE--DSWTALKWVASHANGRGPEDWLKT 146
+ + +I V+ +YR P + +P + D A+ WV + G
Sbjct: 130 IATRGNVIVVTFNYRVGPLGFLSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFG------- 182
Query: 147 YADFQKVILSGDSAGG 162
D + L G+SAGG
Sbjct: 183 -GDPDNITLFGESAGG 197
>pdb|1F6W|A Chain A, Structure Of The Catalytic Domain Of Human Bile Salt
Activated Lipase
Length = 533
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 22/136 (16%)
Query: 41 SKDIIYSSEHNLSARIYFPNNTNR-NQKLPLVVYFHGGAFIFENA----FSLTYHAYMNT 95
++D Y E L I+ P + ++ LP++++ +GGAF+ + F Y
Sbjct: 70 TQDSTYGDEDCLYLNIWVPQGRKQVSRDLPVMIWIYGGAFLMGSGHGANFLNNYLYDGEE 129
Query: 96 LVSHAKIIAVSVDYRRAP-------EDPVPAAH--EDSWTALKWVASHANGRGPEDWLKT 146
+ + +I V+ +YR P + +P + D A+ WV + G
Sbjct: 130 IATRGNVIVVTFNYRVGPLGFLSTGDANLPGNYGLRDQHMAIAWVKRNIAAFG------- 182
Query: 147 YADFQKVILSGDSAGG 162
D + L G+SAGG
Sbjct: 183 -GDPDNITLFGESAGG 197
>pdb|1JMY|A Chain A, Truncated Recombinant Human Bile Salt Stimulated Lipase
Length = 522
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 22/136 (16%)
Query: 41 SKDIIYSSEHNLSARIYFPNNTNR-NQKLPLVVYFHGGAFIFENA----FSLTYHAYMNT 95
++D Y E L I+ P + ++ LP++++ +GGAF+ + F Y
Sbjct: 70 TQDSTYGDEDCLYLNIWVPQGRKQVSRDLPVMIWIYGGAFLMGSGHGANFLNNYLYDGEE 129
Query: 96 LVSHAKIIAVSVDYRRAP-------EDPVPAAH--EDSWTALKWVASHANGRGPEDWLKT 146
+ + +I V+ +YR P + +P + D A+ WV + G
Sbjct: 130 IATRGNVIVVTFNYRVGPLGFLSTGDANLPGNYGLRDQHMAIAWVKRNIAAFG------- 182
Query: 147 YADFQKVILSGDSAGG 162
D + L G+SAGG
Sbjct: 183 -GDPNNITLFGESAGG 197
>pdb|3GA7|A Chain A, 1.55 Angstrom Crystal Structure Of An Acetyl Esterase From
Salmonella Typhimurium
Length = 326
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 51 NLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYR 110
+++ R+Y P T++ + Y HGG FI N T+ L + + +DY
Sbjct: 74 DVTTRLYSPQPTSQ----ATLYYLHGGGFILGNLD--THDRIXRLLARYTGCTVIGIDYS 127
Query: 111 RAPEDPVPAAHEDSWTALKWVASHAN 136
+P+ P A E++ + + HA+
Sbjct: 128 LSPQARYPQAIEETVAVCSYFSQHAD 153
>pdb|1LPM|A Chain A, A Structural Basis For The Chiral Preferences Of Lipases
pdb|1LPN|A Chain A, Analogs Of Reaction Intermediates Identify A Unique
Substrate Binding Site In Candida Rugosa Lipase
pdb|1LPO|A Chain A, Analogs Of Reaction Intermediates Identify A Unique
Substrate Binding Site In Candida Rugosa Lipase
pdb|1LPP|A Chain A, Analogs Of Reaction Intermediates Identify A Unique
Substrate Binding Site In Candida Rugosa Lipase
pdb|1LPS|A Chain A, A Structural Basis For The Chiral Preferences Of Lipases
Length = 549
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 20/127 (15%)
Query: 47 SSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAK-IIAV 105
SSE L+ + P T LP++++ GG F + + ++ K II V
Sbjct: 108 SSEDCLTINVVRPPGTKAGANLPVMLWIFGGGFEVGGTSTFPPAQMITKSIAMGKPIIHV 167
Query: 106 SVDYRRA-----------PEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQKVI 154
SV+YR + E A +D ++WVA + G D KV
Sbjct: 168 SVNYRVSSWGFLAGDEIKAEGSANAGLKDQRLGMQWVADNIAAFG--------GDPTKVT 219
Query: 155 LSGDSAG 161
+ G+SAG
Sbjct: 220 IFGESAG 226
>pdb|3BE8|A Chain A, Crystal Structure Of The Synaptic Protein Neuroligin 4
pdb|3BE8|B Chain B, Crystal Structure Of The Synaptic Protein Neuroligin 4
pdb|2WQZ|A Chain A, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|B Chain B, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|A Chain A, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|B Chain B, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 588
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 24/143 (16%)
Query: 47 SSEHNLSARIYFPNNTN---RNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKII 103
+E L IY P + +N K P++VY HGG+++ + + L S+ +I
Sbjct: 111 QNEDCLYLNIYVPTEDDIHDQNSKKPVMVYIHGGSYMEGTGNMID----GSILASYGNVI 166
Query: 104 AVSVDYRRAPEDPVPAAHE---------DSWTALKWVASHANGRGPEDWLKTYADFQKVI 154
++++YR + + D AL+W+ + G D ++V
Sbjct: 167 VITINYRLGILGFLSTGDQAAKGNYGLLDQIQALRWIEENVGAFG--------GDPKRVT 218
Query: 155 LSGDSAGGNIAHHMGIRQGQEKL 177
+ G AG + + + E L
Sbjct: 219 IFGSGAGASCVSLLTLSHYSEGL 241
>pdb|1CRL|A Chain A, Insights Into Interfacial Activation From An 'open'
Structure Of Candida Rugosa Lipase
pdb|1TRH|A Chain A, Two Conformational States Of Candida Rugosa Lipase
pdb|3RAR|A Chain A, X-Ray Structure Of A Bound Phosphonate Transition State
Analog And Enantioselectivity Of Candida Rugosa Lipase
Toward Chiral Carboxylic Acids
Length = 534
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 20/127 (15%)
Query: 47 SSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAK-IIAV 105
SSE L+ + P T LP++++ GG F + + ++ K II V
Sbjct: 93 SSEDCLTINVVRPPGTKAGANLPVMLWIFGGGFEVGGTSTFPPAQMITKSIAMGKPIIHV 152
Query: 106 SVDYRRA-----------PEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQKVI 154
SV+YR + E A +D ++WVA + G D KV
Sbjct: 153 SVNYRVSSWGFLAGDEIKAEGSANAGLKDQRLGMQWVADNIAAFG--------GDPTKVT 204
Query: 155 LSGDSAG 161
+ G+SAG
Sbjct: 205 IFGESAG 211
>pdb|1LLF|A Chain A, Cholesterol Esterase (Candida Cylindracea) Crystal
Structure At 1.4a Resolution
pdb|1LLF|B Chain B, Cholesterol Esterase (Candida Cylindracea) Crystal
Structure At 1.4a Resolution
Length = 534
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 30/135 (22%)
Query: 44 IIYSSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAF------IFENAFSLTYHAYMNTLV 97
++ SE L+ + P T LP++++ GG F IF A +T M
Sbjct: 90 VLPQSEDCLTINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGK-- 147
Query: 98 SHAKIIAVSVDYRRA-----------PEDPVPAAHEDSWTALKWVASHANGRGPEDWLKT 146
II V+V+YR A E A +D ++WVA + G G
Sbjct: 148 ---PIIHVAVNYRVASWGFLAGDDIKAEGSGNAGLKDQRLGMQWVADNIAGFG------- 197
Query: 147 YADFQKVILSGDSAG 161
D KV + G+SAG
Sbjct: 198 -GDPSKVTIFGESAG 211
>pdb|1CLE|A Chain A, Structure Of Uncomplexed And Linoleate-Bound Candida
Cylindracea Cholesterol Esterase
pdb|1CLE|B Chain B, Structure Of Uncomplexed And Linoleate-Bound Candida
Cylindracea Cholesterol Esterase
Length = 534
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 30/135 (22%)
Query: 44 IIYSSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAF------IFENAFSLTYHAYMNTLV 97
++ SE L+ + P T LP++++ GG F IF A +T M
Sbjct: 90 VLPQSEDCLTINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGK-- 147
Query: 98 SHAKIIAVSVDYRRA-----------PEDPVPAAHEDSWTALKWVASHANGRGPEDWLKT 146
II V+V+YR A E A +D ++WVA + G G
Sbjct: 148 ---PIIHVAVNYRVASWGFLAGDDIKAEGSGNAGLKDQRLGMQWVADNIAGFG------- 197
Query: 147 YADFQKVILSGDSAG 161
D KV + G+SAG
Sbjct: 198 -GDPSKVTIFGESAG 211
>pdb|1DX4|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
Derivative
9-(3-Phenylmethylamino)-1,2,3,4-Tetrahydroacridine
pdb|1QO9|A Chain A, Native Acetylcholinesterase From Drosophila Melanogaster
pdb|1QON|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
Derivative
9-(3-Iodobenzylamino)-1,2,3,4-Tetrahydroacridine
Length = 585
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 21/112 (18%)
Query: 56 IYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYR----- 110
I+ N N LP++++ +GG F+ +A Y+A + + + +I S YR
Sbjct: 129 IHNGNPQNTTNGLPILIWIYGGGFMTGSATLDIYNA--DIMAAVGNVIVASFQYRVGAFG 186
Query: 111 ---RAPEDPVPAAHE--------DSWTALKWVA--SHANGRGPEDWLKTYAD 149
APE P A E D A++W+ +HA G PE W+ + +
Sbjct: 187 FLHLAPEMPSEFAEEAPGNVGLWDQALAIRWLKDNAHAFGGNPE-WMTLFGE 237
>pdb|1UKC|A Chain A, Crystal Structure Of Aspergillus Niger Esta
pdb|1UKC|B Chain B, Crystal Structure Of Aspergillus Niger Esta
Length = 522
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 26/151 (17%)
Query: 48 SEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSV 107
SE L ++ P+ KLP+ ++ GG + EN+ + Y+ S I+ V+
Sbjct: 82 SEDCLFINVFKPSTATSQSKLPVWLFIQGGGYA-ENS-NANYNGTQVIQASDDVIVFVTF 139
Query: 108 DYR------------RAPEDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQKVIL 155
+YR R D + A D AL+WV + G D +++
Sbjct: 140 NYRVGALGFLASEKVRQNGD-LNAGLLDQRKALRWVKQYIEQFG--------GDPDHIVI 190
Query: 156 SGDSAG-GNIAHHMGIRQGQEKLEGINIDGI 185
G SAG G++A+H+ G++ EG+ I I
Sbjct: 191 HGVSAGAGSVAYHLSAYGGKD--EGLFIGAI 219
>pdb|2OGT|A Chain A, Crystal Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est55 At Ph 6.8
Length = 498
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 48 SEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSV 107
SE L I+ P + K P++ + HGGAF+F + S Y H ++ V++
Sbjct: 81 SEDGLYLNIWSPAADGK--KRPVLFWIHGGAFLFGSGSSPWYDG--TAFAKHGDVVVVTI 136
Query: 108 DYR 110
+YR
Sbjct: 137 NYR 139
>pdb|2OGS|A Chain A, Crystal Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est55 At Ph 6.2
Length = 498
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 48 SEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSV 107
SE L I+ P + K P++ + HGGAF+F + S Y H ++ V++
Sbjct: 81 SEDGLYLNIWSPAADGK--KRPVLFWIHGGAFLFGSGSSPWYDG--TAFAKHGDVVVVTI 136
Query: 108 DYR 110
+YR
Sbjct: 137 NYR 139
>pdb|3H04|A Chain A, The Crystal Structure Of The Protein With Unknown Function
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 275
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 70 LVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWTALK 129
++VY HGG +F A L+ Y++ L H +I +S YR PE + ED + +
Sbjct: 31 VIVYIHGGGLMFGKANDLS-PQYIDILTEHYDLIQLS--YRLLPEVSLDCIIEDVYASFD 87
Query: 130 WVASH 134
+ S
Sbjct: 88 AIQSQ 92
>pdb|1GZ7|A Chain A, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|B Chain B, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|C Chain C, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
pdb|1GZ7|D Chain D, Crystal Structure Of The Closed State Of Lipase 2 From
Candida Rugosa
Length = 534
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 20/130 (15%)
Query: 44 IIYSSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAK-I 102
++ + E L+ + P T + LP++++ GG F + + V K +
Sbjct: 90 VLPNDEDCLTINVIRPPGTRASAGLPVMLWIFGGGFELGGSSLFPGDQMVAKSVLMGKPV 149
Query: 103 IAVSVDYRRAP-----------EDPVPAAHEDSWTALKWVASHANGRGPEDWLKTYADFQ 151
I VS++YR A E A D A++WVA + G G D
Sbjct: 150 IHVSMNYRVASWGFLAGPDIQNEGSGNAGLHDQRLAMQWVADNIAGFG--------GDPS 201
Query: 152 KVILSGDSAG 161
KV + G+SAG
Sbjct: 202 KVTIYGESAG 211
>pdb|3BIW|A Chain A, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|B Chain B, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|C Chain C, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|D Chain D, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIX|A Chain A, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|B Chain B, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|C Chain C, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|D Chain D, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
Length = 574
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 29/165 (17%)
Query: 29 IPASLDPTTHVDSKDIIYS-----SEHNLSARIYFPNNTNRNQK---LPLVVYFHGGAFI 80
+P + P ++ D++ S SE L IY P + P++VY HGG+++
Sbjct: 84 LPEVMLPVWFTNNLDVVSSYVQDQSEDCLYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYM 143
Query: 81 FENAFSLTYHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHE---------DSWTALKWV 131
E +L Y + L S+ +I ++V+YR + + D AL+W
Sbjct: 144 -EGTGNL-YDG--SVLASYGNVIVITVNYRLGVLGFLSTGDQAAKGNYGLLDLIQALRWT 199
Query: 132 ASHANGRGPEDWLKTYADFQKVILSGDSAGGNIAHHMGIRQGQEK 176
+ + G D ++ + G AGG+ + + + EK
Sbjct: 200 SENIGFFG--------GDPLRITVFGSGAGGSCVNLLTLSHYSEK 236
>pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B
pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B
Length = 326
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 16/147 (10%)
Query: 67 KLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWT 126
++P F+G + EN S Y ++T + K ++ + +P + +
Sbjct: 120 QVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPK----KREFLFNAIETMPYVKKKADW 175
Query: 127 ALKWVASHANGRGPEDWLKTYADFQKVILSGDSAGGNIAHHMGIRQGQ-------EKLEG 179
AL+W+A + G + +A + V SG A G+ G + EG
Sbjct: 176 ALRWIADRKSTFGER--VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEG 233
Query: 180 INIDGICLLFPYFWGSAPIPGEPYVPE 206
++ D CL+F Y P E V E
Sbjct: 234 LHCDFACLMFQYLVNK---PSEERVRE 257
>pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2
pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2
Length = 351
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 16/147 (10%)
Query: 67 KLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWT 126
++P F+G + EN S Y ++T + K ++ + +P + +
Sbjct: 116 QVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPK----KREFLFNAIETMPYVKKKADW 171
Query: 127 ALKWVASHANGRGPEDWLKTYADFQKVILSGDSAGGNIAHHMGIRQGQ-------EKLEG 179
AL+W+A + G + +A + V SG A G+ G + EG
Sbjct: 172 ALRWIADRKSTFGER--VVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEG 229
Query: 180 INIDGICLLFPYFWGSAPIPGEPYVPE 206
++ D CL+F Y P E V E
Sbjct: 230 LHCDFACLMFQYLVNK---PSEERVRE 253
>pdb|3B3Q|A Chain A, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|B Chain B, Crystal Structure Of A Synaptic Adhesion Complex
Length = 577
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 29 IPASLDPTTHVDSKDIIYS-----SEHNLSARIYFPNNTNRNQK---LPLVVYFHGGAFI 80
+P + P ++ D++ S SE L IY P + P++VY HGG+++
Sbjct: 97 LPEVMLPVWFTNNLDVVSSYVQDQSEDCLYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYM 156
Query: 81 FENAFSLTYHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHE---------DSWTALKWV 131
E +L Y + L S+ +I ++V+YR + + D AL+W
Sbjct: 157 -EGTGNL-YDG--SVLASYGNVIVITVNYRLGVLGFLSTGDQAAKGNYGLLDLIQALRWT 212
Query: 132 ASHANGRGPEDWLKTYADFQKVILSGDSAGGNIAHHMGIRQGQEKL 177
+ + G D ++ + G AGG+ + + + E L
Sbjct: 213 SENIGFFG--------GDPLRITVFGSGAGGSCVNLLTLSHYSEGL 250
>pdb|1HLE|A Chain A, Crystal Structure Of Cleaved Equine Leucocyte Elastase
Inhibitor Determined At 1.95 Angstroms Resolution
Length = 345
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 88 TYHAYMNTLVSHAKIIAV---SVDYRRAPEDPVPAAHEDSWTALKWVASHANGRGPEDWL 144
TY+ + L S K+ SVD+++APED +E WV G+ PE +
Sbjct: 98 TYNFLADFLASTQKMYGAELASVDFQQAPEDARKEINE-------WVKGQTEGKIPELLV 150
Query: 145 KTYAD-FQKVIL 155
K D K++L
Sbjct: 151 KGMVDNMTKLVL 162
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 105 VSVDYRRAPEDPVP--AAHEDSWTALKWVASHANGRGPEDWLKTYADFQ 151
VSV Y+ EDP+P A HE L V A + PE+ +T A+ +
Sbjct: 242 VSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR 290
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 105 VSVDYRRAPEDPVP--AAHEDSWTALKWVASHANGRGPEDWLKTYADFQ 151
VSV Y+ EDP+P A HE L V A + PE+ +T A+ +
Sbjct: 225 VSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR 273
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 105 VSVDYRRAPEDPVP--AAHEDSWTALKWVASHANGRGPEDWLKTYADFQ 151
VSV Y+ EDP+P A HE L V A + PE+ +T A+ +
Sbjct: 225 VSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR 273
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 105 VSVDYRRAPEDPVP--AAHEDSWTALKWVASHANGRGPEDWLKTYADFQ 151
VSV Y+ EDP+P A HE L V A + PE+ +T A+ +
Sbjct: 225 VSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR 273
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 12 FIISQDGHVHRLVGEEIIPASLDPTTHVDSKDIIYSSEHNLSARIYFPNNTNRNQKLPLV 71
F Q H ++ + + DP T V+ + R++ P + N ++K PLV
Sbjct: 129 FTSKQTDEKHLIIDDFLAFTFKDPETGVE-----------IPYRLFVPKDVNPDRKYPLV 177
Query: 72 VYFHGGA 78
V+ HG
Sbjct: 178 VFLHGAG 184
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 105 VSVDYRRAPEDPVP--AAHEDSWTALKWVASHANGRGPEDWLKTYADFQ 151
VSV Y+ EDP+P A HE L V A + PE+ +T A+ +
Sbjct: 225 VSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMR 273
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OBA|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
Length = 1032
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 131 VASHANGRGPEDWLK---TYADFQKVILSGD-SAGGNIAHHMGIRQGQEKLEGINIDGIC 186
A N + PE W T +Q ++ D S +I HH+G RQ + K I ++G
Sbjct: 294 TAFKINVKAPEHWTAENPTLYKYQLDLIGSDGSVIQSIKHHVGFRQVELKDGNITVNGKD 353
Query: 187 LLF 189
+LF
Sbjct: 354 ILF 356
>pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form
Length = 467
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 202 PYVPEYWTTIIDEPWQIARPDTSGLDDPIINPVADPKLSSLG 243
P V YW +ID R S + D + N V D K++ LG
Sbjct: 295 PEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILG 336
>pdb|4DZI|A Chain A, Crystal Structure Of Amidohydrolase Map2389c (Target
Efi-500390) From Mycobacterium Avium Subsp.
Paratuberculosis K-10
pdb|4DZI|B Chain B, Crystal Structure Of Amidohydrolase Map2389c (Target
Efi-500390) From Mycobacterium Avium Subsp.
Paratuberculosis K-10
pdb|4DZI|C Chain C, Crystal Structure Of Amidohydrolase Map2389c (Target
Efi-500390) From Mycobacterium Avium Subsp.
Paratuberculosis K-10
pdb|4DZI|D Chain D, Crystal Structure Of Amidohydrolase Map2389c (Target
Efi-500390) From Mycobacterium Avium Subsp.
Paratuberculosis K-10
Length = 423
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 212 IDEPWQIARPDTSGLDDPIINPVADPKLSSLGCNRLLVFVAQLDLLRGRGLYYVTKLKES 271
+DE W RPD + PI++ +ADP + + +L A+L L+R + + K +
Sbjct: 150 LDEDWGFDRPDHRIIAAPIVS-LADPTRAVEEVDFVLARGAKLVLVRPAPVPGLVKPRSL 208
Query: 272 GWKGDAKVSEIMGETHV---FHLLNPSSLH 298
G + V + E V FHL + LH
Sbjct: 209 GDRSHDPVWARLAEAGVPVGFHLSDSGYLH 238
>pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
Length = 467
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 202 PYVPEYWTTIIDEPWQIARPDTSGLDDPIINPVADPKLSSLG 243
P V YW +ID R S + D + N V D K++ LG
Sbjct: 295 PEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILG 336
>pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|B Chain B, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|C Chain C, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|D Chain D, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|E Chain E, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|F Chain F, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|G Chain G, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|H Chain H, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|I Chain I, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|J Chain J, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|K Chain K, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|L Chain L, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2QG4|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
Length = 467
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 202 PYVPEYWTTIIDEPWQIARPDTSGLDDPIINPVADPKLSSLG 243
P V YW +ID R S + D + N V D K++ LG
Sbjct: 295 PEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILG 336
>pdb|1HNI|B Chain B, Structure Of Hiv-1 Reverse Transcriptase In A Complex With
The Nonnucleoside Inhibitor Alpha-Apa R 95845 At 2.8
Angstroms Resolution
Length = 427
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 146 TYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLFPYFWGSAPIPGEP 202
TY +Q K + +G A AH ++Q E ++ I + I + WG P P
Sbjct: 338 TYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKITTESIVI-----WGKTPKFKLP 392
Query: 203 YVPEYWTTIIDEPWQ 217
E W T E WQ
Sbjct: 393 IQKETWETWWTEYWQ 407
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 67 KLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWT 126
++P F+G + EN S TY ++T + K ++ +P E +
Sbjct: 181 QIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK----ESEFLFNAIHTIPEIGEKAEW 236
Query: 127 ALKWVASHANGRGPEDWLKTYADFQKVILSGDSAGGNIAHHMGIRQGQE-------KLEG 179
AL+W+ G + L +A + V SG A G+ G + EG
Sbjct: 237 ALRWIQDADALFG--ERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEG 294
Query: 180 INIDGICLLFPYF 192
++ D CLLF +
Sbjct: 295 LHTDFACLLFAHL 307
>pdb|1MN6|A Chain A, Thioesterase Domain From Picromycin Polyketide Synthase,
Ph 7.6
pdb|1MN6|B Chain B, Thioesterase Domain From Picromycin Polyketide Synthase,
Ph 7.6
pdb|1MNA|A Chain A, Thioesterase Domain Of Picromycin Polyketide Synthase
(Pics Te), Ph 8.0
pdb|1MNA|B Chain B, Thioesterase Domain Of Picromycin Polyketide Synthase
(Pics Te), Ph 8.0
pdb|1MNQ|A Chain A, Thioesterase Domain Of Picromycin Polyketide Synthase
(Pics Te), Ph 8.4
pdb|1MNQ|B Chain B, Thioesterase Domain Of Picromycin Polyketide Synthase
(Pics Te), Ph 8.4
Length = 298
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 18/91 (19%)
Query: 153 VILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLFPYFWGSAPIPGEPYVPEYWTTII 212
V+L G S G +AH + R E+ G GI L+ PY PG E W+ +
Sbjct: 142 VVLLGHSGGALLAHELAFR--LERAHGAPPAGIVLVDPY------PPGHQEPIEVWSRQL 193
Query: 213 DEPWQIARPDTSGLDDPIINPVADPKLSSLG 243
E GL + P++D +L ++G
Sbjct: 194 GE----------GLFAGELEPMSDARLLAMG 214
>pdb|2HNY|A Chain A, Crystal Structure Of E138k Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|2HNZ|A Chain A, Crystal Structure Of E138k Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 534
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 324 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 379
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 380 ---WGKTPKFKLPIQKETWETWWTEYWQ 404
>pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
Length = 399
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 13/133 (9%)
Query: 67 KLPLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHEDSWT 126
++P F+G + EN S TY ++T + K ++ +P E +
Sbjct: 161 QIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK----ESEFLFNAIHTIPEIGEKAEW 216
Query: 127 ALKWVASHANGRGPEDWLKTYADFQKVILSGDSAGGNIAHHMGIRQGQE-------KLEG 179
AL+W+ G + L +A + V SG A G+ G + EG
Sbjct: 217 ALRWIQDADALFG--ERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEG 274
Query: 180 INIDGICLLFPYF 192
++ D CLLF +
Sbjct: 275 LHTDFACLLFAHL 287
>pdb|2OPQ|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw420867x
Length = 534
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 324 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 379
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 380 ---WGKTPKFKLPIQKETWETWWTEYWQ 404
>pdb|2HND|A Chain A, Crystal Structure Of K101e Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 534
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 324 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 379
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 380 ---WGKTPKFKLPIQKETWETWWTEYWQ 404
>pdb|1HVU|B Chain B, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|E Chain E, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|H Chain H, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|K Chain K, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
Length = 423
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 321 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 378
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 379 -----WGKTPKFKLPIQKETWETWWTEYWQ 403
>pdb|2H7X|A Chain A, Pikromycin Thioesterase Adduct With Reduced Triketide
Affinity Label
pdb|2H7X|B Chain B, Pikromycin Thioesterase Adduct With Reduced Triketide
Affinity Label
pdb|2H7Y|A Chain A, Pikromycin Thioesterase With Covalent Affinity Label
pdb|2H7Y|B Chain B, Pikromycin Thioesterase With Covalent Affinity Label
pdb|2HFJ|A Chain A, Pikromycin Thioesterase With Covalent Pentaketide Affinity
Label
pdb|2HFJ|B Chain B, Pikromycin Thioesterase With Covalent Pentaketide Affinity
Label
Length = 319
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 18/91 (19%)
Query: 153 VILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLFPYFWGSAPIPGEPYVPEYWTTII 212
V+L G S G +AH + R E+ G GI L+ PY PG E W+ +
Sbjct: 163 VVLLGHSGGALLAHELAFR--LERAHGAPPAGIVLVDPY------PPGHQEPIEVWSRQL 214
Query: 213 DEPWQIARPDTSGLDDPIINPVADPKLSSLG 243
E GL + P++D +L ++G
Sbjct: 215 GE----------GLFAGELEPMSDARLLAMG 235
>pdb|1LWF|A Chain A, Crystal Structure Of A Mutant Hiv-1 Reverse Transcriptase
(rtmq+m184v: M41l/d67n/k70r/m184v/t215y) In Complex With
Nevirapine
Length = 560
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1RT3|A Chain A, Azt Drug Resistant Hiv-1 Reverse Transcriptase Complexed
With 1051u91
Length = 560
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3DLK|B Chain B, Crystal Structure Of An Engineered Form Of The Hiv-1
Reverse Transcriptase, Rt69a
pdb|3QLH|B Chain B, Hiv-1 Reverse Transcriptase In Complex With Manicol At The
Rnase H Active Site And Tmc278 (rilpivirine) At The
Nnrti Binding Pocket
Length = 423
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 320 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 377
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 378 -----WGKTPKFKLPIQKETWETWWTEYWQ 402
>pdb|3KLF|B Chain B, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|F Chain F, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|J Chain J, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|N Chain N, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
Length = 444
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 341 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 398
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 399 -----WGKTPKFKLPIQKETWETWWTEYWQ 423
>pdb|2OPR|B Chain B, Crystal Structure Of K101e Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw420867x
Length = 426
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 320 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 377
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 378 -----WGKTPKFKLPIQKETWETWWTEYWQ 402
>pdb|3DI6|A Chain A, Hiv-1 Rt With Pyridazinone Non-Nucleoside Inhibitor
pdb|3DYA|A Chain A, Hiv-1 Rt With Non-Nucleoside Inhibitor Annulated Pyrazole
1
pdb|3E01|A Chain A, Hiv-Rt With Non-Nucleoside Inhibitor Annulated Pyrazole 2
pdb|3M8P|A Chain A, Hiv-1 Rt With Nnrti Tmc-125
pdb|3M8Q|A Chain A, Hiv-1 Rt With Aminopyrimidine Nnrti
pdb|3NBP|A Chain A, Hiv-1 Reverse Transcriptase With Aminopyrimidine Inhibitor
2
Length = 561
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|2ZD1|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Tmc278 (Rilpivirine), A Non-Nucleoside Rt
Inhibitor
pdb|2ZE2|B Chain B, Crystal Structure Of L100iK103N MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Tmc278 (Rilpivirine),
A Non-Nucleoside Rt Inhibitor
pdb|3BGR|B Chain B, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Tmc278 (Rilpivirine),
A Non-Nucleoside Rt Inhibitor
pdb|3IG1|B Chain B, Hiv-1 Reverse Transcriptase With The Inhibitor Beta-
Thujaplicinol Bound At The Rnase H Active Site
pdb|3IRX|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With The Non-Nucleoside Rt Inhibitor
(E)-S-Methyl
5-(1-(3,7-Dimethyl-2-Oxo-2,
3-Dihydrobenzo[d]oxazol-5-Yl)-5-
(5-Methyl-1,3,4-Oxadiazol-2-Yl)pent-1-Enyl)-2-Methoxy-3-
Methylbenzothioate.
pdb|3IS9|B Chain B, Crystal Structure Of The Hiv-1 Reverse Transcriptase (Rt)
In Complex With The Alkenyldiarylmethane (Adam)
Non-Nucleoside Rt Inhibitor Dimethyl
3,3'-(6-Methoxy-6-Oxohex-1-Ene-1,1-
Diyl)bis(5-Cyano-6-Methoxybenzoate).
pdb|3QO9|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Tsao-T, A Non-Nucleoside Rt Inhibitor
(Nnrti)
pdb|2YKM|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Difluoromethylbenzoxazole (Dfmb)
Pyrimidine Thioether Derivative, A Non-Nucleoside Rt
Inhibitor (Nnrti)
pdb|2YKN|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Difluoromethylbenzoxazole (Dfmb)
Pyrimidine Thioether Derivative, A Non-Nucleoside Rt
Inhibitor (Nnrti)
pdb|3V4I|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And Azttp
pdb|3V4I|D Chain D, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And Azttp
pdb|3V6D|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
Cross-Linked With Azt-Terminated Dna
pdb|3V6D|D Chain D, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
Cross-Linked With Azt-Terminated Dna
pdb|3V81|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And The Nonnucleoside Inhibitor Nevirapine
pdb|3V81|D Chain D, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And The Nonnucleoside Inhibitor Nevirapine
pdb|4H4M|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With (E)-
3-(3-Chloro-5-(4-Chloro-2-(2-(2,4-Dioxo-3,4-
Dihydropyrimidin-1(2h)-
Yl)ethoxy)phenoxy)phenyl)acrylonitrile (Jlj494), A
Non-Nucleoside Inhibitor
pdb|4H4O|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With
(E)-3-(3-(2-(2-(2,4-Dioxo-3,
4-Dihydropyrimidin-1(2h)-Yl)ethoxy)- 4-
Fluorophenoxy)-5-Fluorophenyl)acrylonitrile (Jlj506), A
Non- Nucleoside Inhibitor
pdb|4I2P|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Rilpivirine (tmc278) Based Analogue
pdb|4I2Q|B Chain B, Crystal Structure Of K103n/y181c Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Rilpivirine (tmc278)
Analogue
pdb|4G1Q|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (rt) In
Complex With Rilpivirine (tmc278, Edurant), A
Non-nucleoside Rt-inhibiting Drug
Length = 428
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1R0A|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase
Covalently Tethered To Dna Template-primer Solved To 2.8
Angstroms
pdb|2I5J|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Dhbnh, An Rnase H Inhibitor
Length = 429
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|2OPP|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw420867x
Length = 427
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 321 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 378
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 379 -----WGKTPKFKLPIQKETWETWWTEYWQ 403
>pdb|2HNY|B Chain B, Crystal Structure Of E138k Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|2HNZ|B Chain B, Crystal Structure Of E138k Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 422
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 319 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 376
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 377 -----WGKTPKFKLPIQKETWETWWTEYWQ 401
>pdb|1HNV|B Chain B, Structure Of Hiv-1 Rt(Slash)tibo R 86183 Complex Reveals
Similarity In The Binding Of Diverse Nonnucleoside
Inhibitors
pdb|1DLO|B Chain B, Human Immunodeficiency Virus Type 1
pdb|1TVR|B Chain B, Hiv-1 Rt9-Cl Tibo
pdb|4DG1|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Polymorphism Mutation K172a And K173a
Length = 427
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 146 TYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLFPYFWGSAPIPGEP 202
TY +Q K + +G A AH ++Q E ++ I + I + WG P P
Sbjct: 338 TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-----WGKTPKFKLP 392
Query: 203 YVPEYWTTIIDEPWQ 217
E W T E WQ
Sbjct: 393 IQKETWETWWTEYWQ 407
>pdb|1REV|A Chain A, Hiv-1 Reverse Transcriptase
pdb|1RT2|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Tnk-651
pdb|1RT1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Mkc-442
pdb|1KLM|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Bhap U-90152
pdb|1RT4|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc781
pdb|1RT5|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc10
pdb|1RT6|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc38
pdb|1RT7|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Uc84
pdb|1DTT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-2 (Pett130a94)
pdb|1DTQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-1 (Pett131a94)
pdb|1C1B|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gca-186
pdb|1C1C|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Tnk-6123
pdb|1C0T|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+21.1326
pdb|1C0U|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+50.0934
pdb|1EP4|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With S-1153
pdb|1JLQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With 739w94
pdb|1TKT|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw426318
pdb|1TKX|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw490745
pdb|1TKZ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw429576
pdb|1TL1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw451211
pdb|1TL3|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw450557
pdb|3DLE|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gf128590.
pdb|3DLG|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw564511.
pdb|1RTJ|A Chain A, Mechanism Of Inhibition Of Hiv-1 Reverse Transcriptase By
Non-Nucleoside Inhibitors
pdb|1RTI|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1VRT|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1RTH|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1VRU|A Chain A, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
Length = 560
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1LWE|A Chain A, Crystal Structure Of M41lT215Y MUTANT HIV-1 Reverse
Transcriptase (Rtmn) In Complex With Nevirapine
Length = 560
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1FK9|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Dmp- 266(Efavirenz)
Length = 543
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|2YKN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Difluoromethylbenzoxazole (Dfmb)
Pyrimidine Thioether Derivative, A Non-Nucleoside Rt
Inhibitor (Nnrti)
Length = 562
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3KJV|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Dna
pdb|3KK1|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Nuceotide
Inhibitor Gs- 9148-Diphosphate Bound In Nucleotide Site
pdb|3KK2|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Datp Bound In
The Nucleotide Binding Site
pdb|3KK3|A Chain A, Hiv-1 Reverse Transcriptase-Dna Complex With Gs-9148
Terminated Primer
Length = 560
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3V4I|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And Azttp
pdb|3V4I|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And Azttp
pdb|3V6D|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
Cross-Linked With Azt-Terminated Dna
pdb|3V6D|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt)
Cross-Linked With Azt-Terminated Dna
pdb|3V81|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And The Nonnucleoside Inhibitor Nevirapine
pdb|3V81|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Dna And The Nonnucleoside Inhibitor Nevirapine
Length = 556
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 329 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 384
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 385 ---WGKTPKFKLPIQKETWETWWTEYWQ 409
>pdb|1LW0|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1LW2|A Chain A, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With 1051u91
Length = 560
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1HYS|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
Length = 425
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3KLE|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|E Chain E, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|I Chain I, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|M Chain M, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLG|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
pdb|3KLG|E Chain E, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
pdb|3KLI|A Chain A, Crystal Structure Of Unliganded Azt-Resistant Hiv-1
Reverse Transcriptase
Length = 562
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 329 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 384
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 385 ---WGKTPKFKLPIQKETWETWWTEYWQ 409
>pdb|3FFI|A Chain A, Hiv-1 Rt With Pyridone Non-Nucleoside Inhibitor
Length = 561
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 328 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 383
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 384 ---WGKTPKFKLPIQKETWETWWTEYWQ 408
>pdb|3DM2|A Chain A, Crystal Structure Of Hiv-1 K103n Mutant Reverse
Transcriptase In Complex With Gw564511.
pdb|3DOK|A Chain A, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw678248
Length = 560
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1QE1|B Chain B, Crystal Structure Of 3tc-Resistant M184i Mutant Of Hiv-1
Reverse Transcriptase
Length = 427
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1S1W|A Chain A, Crystal Structure Of V106a Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 560
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1S1T|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
pdb|1S1U|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1S1V|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|3DOL|A Chain A, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw695634
Length = 560
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1S1X|A Chain A, Crystal Structure Of V108i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|L Chain L, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|K Chain K, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|J Chain J, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|I Chain I, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Length = 487
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 202 PYVPEYWTTIIDEPWQIARPDTSGLDDPIINPVADPKLSSLG 243
P V YW +ID R S + D + N V D K++ LG
Sbjct: 294 PEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILG 335
>pdb|3KLH|A Chain A, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Post-Translocation
Aztmp-Terminated Dna (Complex P)
Length = 564
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 329 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 384
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 385 ---WGKTPKFKLPIQKETWETWWTEYWQ 409
>pdb|3MED|A Chain A, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc125
pdb|3MEG|A Chain A, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc278
pdb|2WOM|A Chain A, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (K103n)
Length = 560
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|2HMI|B Chain B, Hiv-1 Reverse TranscriptaseFRAGMENT OF FAB 28DNA COMPLEX
pdb|1BQM|B Chain B, Hiv-1 RtHBY 097
pdb|1N5Y|B Chain B, Hiv-1 Reverse Transcriptase Crosslinked To Post-
Translocation Aztmp-Terminated Dna (Complex P)
pdb|1N6Q|B Chain B, Hiv-1 Reverse Transcriptase Crosslinked To Pre-
Translocation Aztmp-Terminated Dna (Complex N)
pdb|1S6P|B Chain B, Crystal Structure Of Human Immunodeficiency Virus Type 1
Reverse Transcriptase (Rt) In Complex With
Janssen-R100943
pdb|1S6Q|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R147681
pdb|1S9E|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R129385
pdb|1S9G|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R120394.
pdb|1SUQ|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R185545
pdb|2B6A|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Thr-50
pdb|2B5J|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R165481
pdb|2BAN|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R157208
pdb|2BE2|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With R221239
Length = 430
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|2RKI|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Triazole Derived Nnrti
pdb|3LAK|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Heterocycle Pyrimidinedione
Non-Nucleoside Inhibitor
pdb|3LAK|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Heterocycle Pyrimidinedione
Non-Nucleoside Inhibitor
pdb|3LAL|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Ethyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAL|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Ethyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Propyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAM|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Propyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Butyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3LAN|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With N1-Butyl Pyrimidinedione Non-Nucleoside
Inhibitor
pdb|3MEC|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Tmc125
pdb|3MEE|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Tmc278
pdb|2WON|A Chain A, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (Wild-Type).
pdb|3QIP|A Chain A, Structure Of Hiv-1 Reverse Transcriptase In Complex With
An Rnase H Inhibitor And Nevirapine
pdb|4I7F|A Chain A, Hiv-1 Reverse Transcriptase In Complex With A Phosphonate
Analog Of Nevirapine
Length = 560
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1LWC|A Chain A, Crystal Structure Of M184v Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|2YNF|A Chain A, Hiv-1 Reverse Transcriptase Y188l Mutant In Complex With
Inhibitor Gsk560
Length = 563
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 330 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 385
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 386 ---WGKTPKFKLPIQKETWETWWTEYWQ 410
>pdb|1FKO|A Chain A, Crystal Structure Of Nnrti Resistant K103n Mutant Hiv-1
Reverse Transcriptase In Complex With Dmp-266(Efavirenz)
pdb|1FKP|A Chain A, Crystal Structure Of Nnrti Resistant K103n Mutant Hiv-1
Reverse Transcriptase In Complex With Nevirapine
Length = 543
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1BQN|B Chain B, Tyr 188 Leu Hiv-1 RtHBY 097
Length = 430
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3KJV|B Chain B, Hiv-1 Reverse Transcriptase In Complex With Dna
pdb|3KK1|B Chain B, Hiv-1 Reverse Transcriptase-Dna Complex With Nuceotide
Inhibitor Gs- 9148-Diphosphate Bound In Nucleotide Site
pdb|3KK2|B Chain B, Hiv-1 Reverse Transcriptase-Dna Complex With Datp Bound In
The Nucleotide Binding Site
pdb|3KK3|B Chain B, Hiv-1 Reverse Transcriptase-Dna Complex With Gs-9148
Terminated Primer
Length = 452
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 337 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 394
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 395 -----WGKTPKFKLPIQKETWETWWTEYWQ 419
>pdb|3DRS|A Chain A, Hiv Reverse Transcriptase K103n Mutant In Complex With
Inhibitor R8d
pdb|3LP0|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3LP1|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3LP2|A Chain A, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3T1A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M05
pdb|3T1A|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M05
pdb|3TAM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M06
Length = 563
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 330 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 385
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 386 ---WGKTPKFKLPIQKETWETWWTEYWQ 410
>pdb|2RF2|B Chain B, Hiv Reverse Transcriptase In Complex With Inhibitor 7e
(Nnrti)
pdb|3C6T|B Chain B, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 14
pdb|3C6U|B Chain B, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 22
pdb|3DRP|B Chain B, Hiv Reverse Transcriptase In Complex With Inhibitor R8e
pdb|3I0R|B Chain B, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 3
pdb|3I0S|B Chain B, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 7
Length = 443
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 328 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 385
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 386 -----WGKTPKFKLPIQKETWETWWTEYWQ 410
>pdb|2OPQ|B Chain B, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw420867x
Length = 424
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 321 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 378
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 379 -----WGKTPKFKLPIQKETWETWWTEYWQ 403
>pdb|2HND|B Chain B, Crystal Structure Of K101e Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 422
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 319 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 376
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 377 -----WGKTPKFKLPIQKETWETWWTEYWQ 401
>pdb|1HPZ|B Chain B, Human Immunodeficiency Virus Type 1
pdb|1HQE|B Chain B, Human Immunodeficiency Virus Type 1
pdb|1HQU|B Chain B, Human Immunodeficiency Virus Type 1
pdb|1SV5|B Chain B, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase (Rt) In Complex With Janssen-R165335
Length = 430
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 146 TYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLFPYFWGSAPIPGEP 202
TY +Q K + +G A AH ++Q E ++ I + I + WG P P
Sbjct: 338 TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-----WGKTPKFKLP 392
Query: 203 YVPEYWTTIIDEPWQ 217
E W T E WQ
Sbjct: 393 IQKETWETWWTEYWQ 407
>pdb|1S6P|A Chain A, Crystal Structure Of Human Immunodeficiency Virus Type 1
Reverse Transcriptase (Rt) In Complex With
Janssen-R100943
pdb|1S6Q|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R147681
pdb|1S9E|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R129385
pdb|1S9G|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R120394.
pdb|1SUQ|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R185545
pdb|2B6A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Thr-50
pdb|2B5J|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R165481
pdb|2BAN|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Janssen-R157208
pdb|2BE2|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With R221239
Length = 560
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1EET|B Chain B, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc204
pdb|1IKW|B Chain B, Wild Type Hiv-1 Reverse Transcriptase In Complex With
Efavirenz
pdb|3ISN|D Chain D, Crystal Structure Of Hiv-1 Rt Bound To A 6-Vinylpyrimidine
Inhibitor
pdb|3ITH|B Chain B, Crystal Structure Of The Hiv-1 Reverse Transcriptase Bound
To A 6-Vinylpyrimidine Inhibitor
pdb|3ITH|D Chain D, Crystal Structure Of The Hiv-1 Reverse Transcriptase Bound
To A 6-Vinylpyrimidine Inhibitor
Length = 427
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|2OPS|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw420867x
Length = 542
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 326 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 381
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 382 ---WGKTPKFKLPIQKETWETWWTEYWQ 406
>pdb|2I5J|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Dhbnh, An Rnase H Inhibitor
Length = 552
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1J5O|B Chain B, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
Length = 430
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1RT3|B Chain B, Azt Drug Resistant Hiv-1 Reverse Transcriptase Complexed
With 1051u91
Length = 440
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1UWB|B Chain B, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo
Length = 427
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1JLE|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase
pdb|1JLG|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 560
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3DRS|B Chain B, Hiv Reverse Transcriptase K103n Mutant In Complex With
Inhibitor R8d
pdb|3LP0|B Chain B, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3LP1|B Chain B, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3LP2|B Chain B, Hiv-1 Reverse Transcriptase With Inhibitor
pdb|3TAM|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (K103n
Mutant) In Complex With Inhibitor M06
Length = 443
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 328 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 385
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 386 -----WGKTPKFKLPIQKETWETWWTEYWQ 410
>pdb|2RF2|A Chain A, Hiv Reverse Transcriptase In Complex With Inhibitor 7e
(Nnrti)
pdb|3C6T|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 14
pdb|3C6U|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 22
pdb|3DRP|A Chain A, Hiv Reverse Transcriptase In Complex With Inhibitor R8e
pdb|3I0R|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 3
pdb|3I0S|A Chain A, Crystal Structure Of Hiv Reverse Transcriptase In Complex
With Inhibitor 7
pdb|3T19|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Wild
Type) In Complex With Inhibitor M05
pdb|3T19|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Wild
Type) In Complex With Inhibitor M05
pdb|2YNG|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk560
pdb|2YNH|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk500
pdb|2YNI|A Chain A, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk952
Length = 563
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 330 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 385
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 386 ---WGKTPKFKLPIQKETWETWWTEYWQ 410
>pdb|2OPP|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw420867x
Length = 542
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 324 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 379
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 380 ---WGKTPKFKLPIQKETWETWWTEYWQ 404
>pdb|1LWF|B Chain B, Crystal Structure Of A Mutant Hiv-1 Reverse Transcriptase
(rtmq+m184v: M41l/d67n/k70r/m184v/t215y) In Complex With
Nevirapine
Length = 440
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|4I7G|B Chain B, Hiv-1 Reverse Transcriptase With Bound Fragment At Nnrti
Adjacent Site
pdb|4ICL|B Chain B, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Incoming Dntp Binding Site
pdb|4ID5|B Chain B, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Rnase H Primer Grip Site
pdb|4IDK|B Chain B, Hiv-1 Reverse Transcriptase With Bound Fragment At The 428
Site
pdb|4IFV|B Chain B, Detecting Allosteric Sites Of Hiv-1 Reverse Transcriptase
By X-ray Crystallographic Fragment Screening
pdb|4IFY|B Chain B, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Knuckles Site
pdb|4IG0|B Chain B, Hiv-1 Reverse Transcriptase With Bound Fragment At The 507
Site
pdb|4IG3|B Chain B, Hiv-1 Reverse Transcriptase With Bound Fragment Near
Knuckles Site
Length = 429
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 146 TYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLFPYFWGSAPIPGEP 202
TY +Q K + +G A AH ++Q E ++ I + I + WG P P
Sbjct: 339 TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-----WGKTPKFKLP 393
Query: 203 YVPEYWTTIIDEPWQ 217
E W T E WQ
Sbjct: 394 IQKETWETWWTEYWQ 408
>pdb|1HYS|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
Length = 553
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|2JLE|A Chain A, Novel Indazole Nnrtis Created Using Molecular Template
Hybridization Based On Crystallographic Overlays
pdb|2JLE|B Chain B, Novel Indazole Nnrtis Created Using Molecular Template
Hybridization Based On Crystallographic Overlays
Length = 566
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3HVT|B Chain B, Structural Basis Of Asymmetry In The Human
Immunodeficiency Virus Type 1 Reverse Transcriptase
Heterodimer
pdb|2VG5|B Chain B, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
pdb|2VG6|B Chain B, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
pdb|2VG7|B Chain B, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
Length = 428
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|2OPS|B Chain B, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw420867x
Length = 435
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 320 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 377
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 378 -----WGKTPKFKLPIQKETWETWWTEYWQ 402
>pdb|1HPZ|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1HQE|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1HQU|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1SV5|A Chain A, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase (Rt) In Complex With Janssen-R165335
Length = 560
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1HMV|A Chain A, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1TV6|A Chain A, Hiv-1 Reverse Transcriptase Complexed With Cp-94,707
pdb|1HMV|C Chain C, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1HMV|E Chain E, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1HMV|G Chain G, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
Length = 560
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3DMJ|A Chain A, Crystal Structure Of Hiv-1 V106a And Y181c Mutant Reverse
Transcriptase In Complex With Gw564511
Length = 560
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1IKW|A Chain A, Wild Type Hiv-1 Reverse Transcriptase In Complex With
Efavirenz
pdb|3ISN|C Chain C, Crystal Structure Of Hiv-1 Rt Bound To A 6-Vinylpyrimidine
Inhibitor
pdb|3ITH|A Chain A, Crystal Structure Of The Hiv-1 Reverse Transcriptase Bound
To A 6-Vinylpyrimidine Inhibitor
pdb|3ITH|C Chain C, Crystal Structure Of The Hiv-1 Reverse Transcriptase Bound
To A 6-Vinylpyrimidine Inhibitor
Length = 560
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1C1B|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gca-186
Length = 440
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1JKH|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Dmp-266(Efavirenz)
pdb|1JLA|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|1JLB|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1JLC|A Chain A, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 560
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1RTD|A Chain A, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
pdb|1RTD|C Chain C, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
Length = 554
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1RTH|B Chain B, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1RTI|B Chain B, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1RTJ|B Chain B, Mechanism Of Inhibition Of Hiv-1 Reverse Transcriptase By
Non-Nucleoside Inhibitors
pdb|1VRT|B Chain B, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1VRU|B Chain B, High Resolution Structures Of Hiv-1 Rt From Four Rt-
Inhibitor Complexes
pdb|1REV|B Chain B, Hiv-1 Reverse Transcriptase
pdb|1RT2|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Tnk-651
pdb|1RT1|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed
With Mkc-442
pdb|1KLM|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Bhap U-90152
pdb|1RT4|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Uc781
pdb|1RT5|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Uc10
pdb|1RT6|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Uc38
pdb|1RT7|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Uc84
pdb|1RTD|B Chain B, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
pdb|1RTD|D Chain D, Structure Of A Catalytic Complex Of Hiv-1 Reverse
Transcriptase: Implications For Nucleoside Analog Drug
Resistance
pdb|1DTT|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-2 (Pett130a94)
pdb|1DTQ|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Pett-1 (Pett131a94)
pdb|1C1C|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Tnk-6123
pdb|1C0T|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+21.1326
pdb|1C0U|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Bm+50.0934
pdb|1EP4|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With S-1153
pdb|1FK9|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Dmp- 266(Efavirenz)
pdb|1JLQ|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With 739w94
pdb|1TKT|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw426318
pdb|1TKX|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw490745
pdb|1TKZ|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw429576
pdb|1TL1|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw451211
pdb|1TL3|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw450557
pdb|2RKI|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Triazole Derived Nnrti
pdb|3DLE|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gf128590.
pdb|3DLG|B Chain B, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Gw564511.
pdb|3DOL|B Chain B, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw695634.
pdb|3DI6|B Chain B, Hiv-1 Rt With Pyridazinone Non-Nucleoside Inhibitor
pdb|3DYA|B Chain B, Hiv-1 Rt With Non-Nucleoside Inhibitor Annulated Pyrazole
1
pdb|3E01|B Chain B, Hiv-Rt With Non-Nucleoside Inhibitor Annulated Pyrazole 2
pdb|3MEC|B Chain B, Hiv-1 Reverse Transcriptase In Complex With Tmc125
pdb|3MEE|B Chain B, Hiv-1 Reverse Transcriptase In Complex With Tmc278
pdb|3M8P|B Chain B, Hiv-1 Rt With Nnrti Tmc-125
pdb|3M8Q|B Chain B, Hiv-1 Rt With Aminopyrimidine Nnrti
pdb|2WON|B Chain B, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (Wild-Type).
pdb|3NBP|B Chain B, Hiv-1 Reverse Transcriptase With Aminopyrimidine Inhibitor
2
pdb|3QIP|B Chain B, Structure Of Hiv-1 Reverse Transcriptase In Complex With
An Rnase H Inhibitor And Nevirapine
pdb|4I7F|B Chain B, Hiv-1 Reverse Transcriptase In Complex With A Phosphonate
Analog Of Nevirapine
Length = 440
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3QLH|A Chain A, Hiv-1 Reverse Transcriptase In Complex With Manicol At The
Rnase H Active Site And Tmc278 (rilpivirine) At The
Nnrti Binding Pocket
Length = 555
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 328 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 383
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 384 ---WGKTPKFKLPIQKETWETWWTEYWQ 408
>pdb|2YKM|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With A Difluoromethylbenzoxazole (Dfmb)
Pyrimidine Thioether Derivative, A Non-Nucleoside Rt
Inhibitor (Nnrti)
Length = 562
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3DRR|A Chain A, Hiv Reverse Transcriptase Y181c Mutant In Complex With
Inhibitor R8e
Length = 563
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 330 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 385
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 386 ---WGKTPKFKLPIQKETWETWWTEYWQ 410
>pdb|1BQN|A Chain A, Tyr 188 Leu Hiv-1 RtHBY 097
Length = 558
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1IKV|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
Efivarenz
pdb|1IKX|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
The Inhibitor Pnu142721
pdb|1IKY|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc194
Length = 560
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1JLF|A Chain A, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 560
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1LWC|B Chain B, Crystal Structure Of M184v Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 440
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1IKV|B Chain B, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
Efivarenz
pdb|1IKX|B Chain B, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
The Inhibitor Pnu142721
pdb|1IKY|B Chain B, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc194
Length = 427
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1QE1|A Chain A, Crystal Structure Of 3tc-Resistant M184i Mutant Of Hiv-1
Reverse Transcriptase
pdb|1J5O|A Chain A, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
Length = 558
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3DRR|B Chain B, Hiv Reverse Transcriptase Y181c Mutant In Complex With
Inhibitor R8e
Length = 443
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 328 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 385
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 386 -----WGKTPKFKLPIQKETWETWWTEYWQ 410
>pdb|2ZD1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Tmc278 (Rilpivirine), A Non-Nucleoside Rt
Inhibitor
pdb|4H4M|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With (E)-
3-(3-Chloro-5-(4-Chloro-2-(2-(2,4-Dioxo-3,4-
Dihydropyrimidin-1(2h)-
Yl)ethoxy)phenoxy)phenyl)acrylonitrile (Jlj494), A
Non-Nucleoside Inhibitor
pdb|4H4O|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With
(E)-3-(3-(2-(2-(2,4-Dioxo-3,
4-Dihydropyrimidin-1(2h)-Yl)ethoxy)- 4-
Fluorophenoxy)-5-Fluorophenyl)acrylonitrile (Jlj506), A
Non- Nucleoside Inhibitor
pdb|4I2P|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With Rilpivirine (tmc278) Based Analogue
pdb|4G1Q|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (rt) In
Complex With Rilpivirine (tmc278, Edurant), A
Non-nucleoside Rt-inhibiting Drug
pdb|4I7G|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At Nnrti
Adjacent Site
pdb|4ICL|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Incoming Dntp Binding Site
pdb|4ID5|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Rnase H Primer Grip Site
pdb|4IDK|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The 428
Site
pdb|4IFV|A Chain A, Detecting Allosteric Sites Of Hiv-1 Reverse Transcriptase
By X-ray Crystallographic Fragment Screening
pdb|4IFY|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The
Knuckles Site
pdb|4IG0|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment At The 507
Site
pdb|4IG3|A Chain A, Hiv-1 Reverse Transcriptase With Bound Fragment Near
Knuckles Site
Length = 557
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 329 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 384
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 385 ---WGKTPKFKLPIQKETWETWWTEYWQ 409
>pdb|1HVU|A Chain A, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|D Chain D, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|G Chain G, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
pdb|1HVU|J Chain J, Human Immunodeficiency Virus Type 1 Reverse Transcriptase
Complexed With A 33-Base Nucleotide Rna Pseudoknot
Length = 554
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1N5Y|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Post-
Translocation Aztmp-Terminated Dna (Complex P)
pdb|1N6Q|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Pre-
Translocation Aztmp-Terminated Dna (Complex N)
pdb|1T03|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Tenofovir
Terminated Template-Primer (Complex P)
pdb|1T05|A Chain A, Hiv-1 Reverse Transcriptase Crosslinked To Template-Primer
With Tenofovir-Diphosphate Bound As The Incoming
Nucleotide Substrate
pdb|1R0A|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase
Covalently Tethered To Dna Template-primer Solved To 2.8
Angstroms
Length = 558
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1LWE|B Chain B, Crystal Structure Of M41lT215Y MUTANT HIV-1 Reverse
Transcriptase (Rtmn) In Complex With Nevirapine
Length = 440
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1HMV|B Chain B, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1TV6|B Chain B, Hiv-1 Reverse Transcriptase Complexed With Cp-94,707
pdb|1HMV|D Chain D, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1HMV|F Chain F, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
pdb|1HMV|H Chain H, The Structure Of Unliganded Reverse Transcriptase From The
Human Immunodeficiency Virus Type 1
Length = 440
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3JSM|A Chain A, K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To
Ds-Dna And Complexed With Tenofovir-Diphosphate As The
Incoming Nucleotide Substrate
pdb|3JYT|A Chain A, K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To
Ds- Dna And Complexed With Datp As The Incoming
Nucleotide Substrate
Length = 558
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1S1X|B Chain B, Crystal Structure Of V108i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
Length = 440
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1S1T|B Chain B, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
pdb|1S1U|B Chain B, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1S1V|B Chain B, Crystal Structure Of L100i Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
Length = 440
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1T05|B Chain B, Hiv-1 Reverse Transcriptase Crosslinked To Template-Primer
With Tenofovir-Diphosphate Bound As The Incoming
Nucleotide Substrate
Length = 437
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 146 TYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLFPYFWGSAPIPGEP 202
TY +Q K + +G A AH ++Q E ++ I + I + WG P P
Sbjct: 338 TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-----WGKTPKFKLP 392
Query: 203 YVPEYWTTIIDEPWQ 217
E W T E WQ
Sbjct: 393 IQKETWETWWTEYWQ 407
>pdb|1HNI|A Chain A, Structure Of Hiv-1 Reverse Transcriptase In A Complex With
The Nonnucleoside Inhibitor Alpha-Apa R 95845 At 2.8
Angstroms Resolution
pdb|1HNV|A Chain A, Structure Of Hiv-1 Rt(Slash)tibo R 86183 Complex Reveals
Similarity In The Binding Of Diverse Nonnucleoside
Inhibitors
pdb|1TVR|A Chain A, Hiv-1 Rt9-Cl Tibo
pdb|2HMI|A Chain A, Hiv-1 Reverse TranscriptaseFRAGMENT OF FAB 28DNA COMPLEX
Length = 558
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|4DG1|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) With
Polymorphism Mutation K172a And K173a
Length = 549
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1LW0|B Chain B, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1LW2|B Chain B, Crystal Structure Of T215y Mutant Hiv-1 Reverse
Transcriptase In Complex With 1051u91
Length = 440
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1FKO|B Chain B, Crystal Structure Of Nnrti Resistant K103n Mutant Hiv-1
Reverse Transcriptase In Complex With Dmp-266(Efavirenz)
pdb|1FKP|B Chain B, Crystal Structure Of Nnrti Resistant K103n Mutant Hiv-1
Reverse Transcriptase In Complex With Nevirapine
pdb|3DM2|B Chain B, Crystal Structure Of Hiv-1 K103n Mutant Reverse
Transcriptase In Complex With Gw564511.
pdb|3DOK|B Chain B, Crystal Structure Of K103n Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw678248.
pdb|3MED|B Chain B, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc125
pdb|3MEG|B Chain B, Hiv-1 K103n Reverse Transcriptase In Complex With Tmc278
pdb|2WOM|B Chain B, Crystal Structure Of Uk-453061 Bound To Hiv-1 Reverse
Transcriptase (K103n)
Length = 440
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|4B3Q|A Chain A, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A Unique
Rt Conformation And Substrate Interface
Length = 560
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|4B3P|A Chain A, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A Unique
Rt Conformation And Substrate Interface
Length = 560
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1UWB|A Chain A, Tyr 181 Cys Hiv-1 Rt8-Cl Tibo
Length = 558
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|2OPR|A Chain A, Crystal Structure Of K101e Mutant Hiv-1 Reverse
Transcriptase In Complex With Gw420867x
Length = 547
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 326 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 381
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 382 ---WGKTPKFKLPIQKETWETWWTEYWQ 406
>pdb|2IAJ|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Atp
pdb|2IC3|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Nonnucleoside
Inhibitor Hby 097
Length = 560
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3KLF|A Chain A, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|E Chain E, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|I Chain I, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
pdb|3KLF|M Chain M, Crystal Structure Of Wild-Type Hiv-1 Reverse Transcriptase
Crosslinked To A Dsdna With A Bound Excision Product,
Aztppppa
Length = 557
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 329 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 384
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 385 ---WGKTPKFKLPIQKETWETWWTEYWQ 409
>pdb|3FFI|B Chain B, Hiv-1 Rt With Pyridone Non-Nucleoside Inhibitor
Length = 441
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 326 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 383
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 384 -----WGKTPKFKLPIQKETWETWWTEYWQ 408
>pdb|3BGR|A Chain A, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Tmc278 (Rilpivirine),
A Non-Nucleoside Rt Inhibitor
pdb|4I2Q|A Chain A, Crystal Structure Of K103n/y181c Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Rilpivirine (tmc278)
Analogue
Length = 557
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 329 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 384
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 385 ---WGKTPKFKLPIQKETWETWWTEYWQ 409
>pdb|2ZE2|A Chain A, Crystal Structure Of L100iK103N MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Tmc278 (Rilpivirine),
A Non-Nucleoside Rt Inhibitor
Length = 557
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 329 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 384
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 385 ---WGKTPKFKLPIQKETWETWWTEYWQ 409
>pdb|4B3O|A Chain A, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A Unique
Rt Conformation And Substrate Interface
Length = 560
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|2YNF|B Chain B, Hiv-1 Reverse Transcriptase Y188l Mutant In Complex With
Inhibitor Gsk560
pdb|2YNG|B Chain B, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk560
pdb|2YNH|B Chain B, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk500
pdb|2YNI|B Chain B, Hiv-1 Reverse Transcriptase Mutant In Complex With
Inhibitor Gsk952
Length = 447
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 344 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 401
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 402 -----WGKTPKFKLPIQKETWETWWTEYWQ 426
>pdb|1S1W|B Chain B, Crystal Structure Of V106a Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 440
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1EET|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc204
Length = 557
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3QO9|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With Tsao-T, A Non-Nucleoside Rt Inhibitor
(Nnrti)
Length = 557
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 329 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 384
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 385 ---WGKTPKFKLPIQKETWETWWTEYWQ 409
>pdb|2IAJ|B Chain B, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Atp
pdb|2IC3|B Chain B, Crystal Structure Of K103nY181C MUTANT HIV-1 Reverse
Transcriptase (Rt) In Complex With Nonnucleoside
Inhibitor Hby 097
Length = 447
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 146 TYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLFPYFWGSAPIPGEP 202
TY +Q K + +G A AH ++Q E ++ I + I + WG P P
Sbjct: 338 TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-----WGKTPKFKLP 392
Query: 203 YVPEYWTTIIDEPWQ 217
E W T E WQ
Sbjct: 393 IQKETWETWWTEYWQ 407
>pdb|1T03|B Chain B, Hiv-1 Reverse Transcriptase Crosslinked To Tenofovir
Terminated Template-Primer (Complex P)
pdb|3JSM|B Chain B, K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To
Ds-Dna And Complexed With Tenofovir-Diphosphate As The
Incoming Nucleotide Substrate
pdb|3JYT|B Chain B, K65r Mutant Hiv-1 Reverse Transcriptase Cross-Linked To
Ds- Dna And Complexed With Datp As The Incoming
Nucleotide Substrate
Length = 437
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 146 TYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLFPYFWGSAPIPGEP 202
TY +Q K + +G A AH ++Q E ++ I + I + WG P P
Sbjct: 338 TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-----WGKTPKFKLP 392
Query: 203 YVPEYWTTIIDEPWQ 217
E W T E WQ
Sbjct: 393 IQKETWETWWTEYWQ 407
>pdb|3KLE|B Chain B, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|F Chain F, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|J Chain J, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLE|N Chain N, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To A Dsdna With A Bound
Excision Product, Aztppppa
pdb|3KLG|B Chain B, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
pdb|3KLG|F Chain F, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Pre-Translocation
Aztmp-Terminated Dna (Complex N)
pdb|3KLH|B Chain B, Crystal Structure Of Azt-Resistant Hiv-1 Reverse
Transcriptase Crosslinked To Post-Translocation
Aztmp-Terminated Dna (Complex P)
pdb|3KLI|B Chain B, Crystal Structure Of Unliganded Azt-Resistant Hiv-1
Reverse Transcriptase
Length = 437
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 146 TYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLFPYFWGSAPIPGEP 202
TY +Q K + +G A AH ++Q E ++ I + I + WG P P
Sbjct: 338 TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-----WGKTPKFKLP 392
Query: 203 YVPEYWTTIIDEPWQ 217
E W T E WQ
Sbjct: 393 IQKETWETWWTEYWQ 407
>pdb|3IRX|A Chain A, Crystal Structure Of Hiv-1 Reverse Transcriptase (Rt) In
Complex With The Non-Nucleoside Rt Inhibitor
(E)-S-Methyl
5-(1-(3,7-Dimethyl-2-Oxo-2,
3-Dihydrobenzo[d]oxazol-5-Yl)-5-
(5-Methyl-1,3,4-Oxadiazol-2-Yl)pent-1-Enyl)-2-Methoxy-3-
Methylbenzothioate.
pdb|3IS9|A Chain A, Crystal Structure Of The Hiv-1 Reverse Transcriptase (Rt)
In Complex With The Alkenyldiarylmethane (Adam)
Non-Nucleoside Rt Inhibitor Dimethyl
3,3'-(6-Methoxy-6-Oxohex-1-Ene-1,1-
Diyl)bis(5-Cyano-6-Methoxybenzoate)
Length = 558
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 330 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 385
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 386 ---WGKTPKFKLPIQKETWETWWTEYWQ 410
>pdb|2VG5|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
pdb|2VG6|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
pdb|2VG7|A Chain A, Crystal Structures Of Hiv-1 Reverse Transcriptase
Complexes With Thiocarbamate Non-Nucleoside Inhibitors
Length = 557
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1DLO|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1BQM|A Chain A, Hiv-1 RtHBY 097
Length = 556
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3HVT|A Chain A, Structural Basis Of Asymmetry In The Human
Immunodeficiency Virus Type 1 Reverse Transcriptase
Heterodimer
Length = 556
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3DMJ|B Chain B, Crystal Structure Of Hiv-1 V106a And Y181c Mutant Reverse
Transcriptase In Complex With Gw564511
Length = 440
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1JKH|B Chain B, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Dmp-266(Efavirenz)
pdb|1JLA|B Chain B, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Tnk-651
pdb|1JLB|B Chain B, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1JLC|B Chain B, Crystal Structure Of Y181c Mutant Hiv-1 Reverse
Transcriptase In Complex With Pett-2
Length = 440
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|1JLE|B Chain B, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase
pdb|1JLF|B Chain B, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Nevirapine
pdb|1JLG|B Chain B, Crystal Structure Of Y188c Mutant Hiv-1 Reverse
Transcriptase In Complex With Uc-781
Length = 440
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 325 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 382
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 -----WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase
Length = 494
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 202 PYVPEYWTTIIDEPWQIARPDTSGLDDPIINPVADPKLSSLG 243
P V YW +ID R S + D + N V D K++ LG
Sbjct: 294 PEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILG 335
>pdb|3VKF|A Chain A, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|B Chain B, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 585
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 21/118 (17%)
Query: 69 PLVVYFHGGAFIFENAFSLTYHAYMNTLVSHAKIIAVSVDYRRAPEDPVPAAHE------ 122
P++VY HGG+++ E +L Y + L S+ +I ++V+YR + +
Sbjct: 150 PVMVYIHGGSYM-EGTGNL-YDG--SVLASYGNVIVITVNYRLGVLGFLSTGDQAAKGNY 205
Query: 123 ---DSWTALKWVASHANGRGPEDWLKTYADFQKVILSGDSAGGNIAHHMGIRQGQEKL 177
D AL+W + + G D ++ + G AGG+ + + + E L
Sbjct: 206 GLLDLIQALRWTSENIGFFG--------GDPLRITVFGSGAGGSCVNLLTLSHYSEGL 255
>pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|B Chain B, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|C Chain C, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
Length = 493
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 202 PYVPEYWTTIIDEPWQIARPDTSGLDDPIINPVADPKLSSLG 243
P V YW +ID R S + D + N V D K++ LG
Sbjct: 293 PEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILG 334
>pdb|4EDF|A Chain A, Dimeric Hugdh, K94e
pdb|4EDF|B Chain B, Dimeric Hugdh, K94e
pdb|4EDF|C Chain C, Dimeric Hugdh, K94e
pdb|4EDF|D Chain D, Dimeric Hugdh, K94e
Length = 494
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 202 PYVPEYWTTIIDEPWQIARPDTSGLDDPIINPVADPKLSSLG 243
P V YW +ID R S + D + N V D K++ LG
Sbjct: 294 PEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILG 335
>pdb|3DLK|A Chain A, Crystal Structure Of An Engineered Form Of The Hiv-1
Reverse Transcriptase, Rt69a
Length = 556
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 328 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 383
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 384 ---WGKTPKFKLPIQKETWETWWTEYWQ 408
>pdb|3IG1|A Chain A, Hiv-1 Reverse Transcriptase With The Inhibitor Beta-
Thujaplicinol Bound At The Rnase H Active Site
Length = 555
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 133 SHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLF 189
+ +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 327 AEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-- 382
Query: 190 PYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 383 ---WGKTPKFKLPIQKETWETWWTEYWQ 407
>pdb|4B3P|B Chain B, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A Unique
Rt Conformation And Substrate Interface
pdb|4B3Q|B Chain B, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A Unique
Rt Conformation And Substrate Interface
Length = 454
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 146 TYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICLLFPYFWGSAPIPGEP 202
TY +Q K + +G A AH ++Q E ++ I + I + WG P P
Sbjct: 352 TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-----WGKTPKFKLP 406
Query: 203 YVPEYWTTIIDEPWQ 217
E W T E WQ
Sbjct: 407 IQKETWETWWTEYWQ 421
>pdb|4B3O|B Chain B, Structures Of Hiv-1 Rt And Rna-dna Complex Reveal A Unique
Rt Conformation And Substrate Interface
Length = 441
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 131 VASHANGRGPEDWLKTYADFQ---KVILSGDSAGGNIAHHMGIRQGQEKLEGINIDGICL 187
+ + +G W TY +Q K + +G A AH ++Q E ++ I + I +
Sbjct: 326 LIAEIQKQGQGQW--TYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI 383
Query: 188 LFPYFWGSAPIPGEPYVPEYWTTIIDEPWQ 217
WG P P E W T E WQ
Sbjct: 384 -----WGKTPKFKLPIQKETWETWWTEYWQ 408
>pdb|3D3N|A Chain A, Crystal Structure Of LipaseESTERASE (LP_2923) FROM
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr108
pdb|3D3N|B Chain B, Crystal Structure Of LipaseESTERASE (LP_2923) FROM
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr108
Length = 284
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 5/28 (17%)
Query: 142 DWLKTYA-----DFQKVILSGDSAGGNI 164
DW+ T A D Q++IL+G SAGG++
Sbjct: 94 DWITTQASAHHVDCQRIILAGFSAGGHV 121
>pdb|3BXP|A Chain A, Crystal Structure Of A Putative Carboxylesterase (lp_2923)
From Lactobacillus Plantarum Wcfs1 At 1.70 A Resolution
pdb|3BXP|B Chain B, Crystal Structure Of A Putative Carboxylesterase (lp_2923)
From Lactobacillus Plantarum Wcfs1 At 1.70 A Resolution
Length = 277
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 5/28 (17%)
Query: 142 DWLKTYA-----DFQKVILSGDSAGGNI 164
DW+ T A D Q++IL+G SAGG++
Sbjct: 95 DWITTQASAHHVDCQRIILAGFSAGGHV 122
>pdb|2ZGO|A Chain A, Crystal Structure Of Aal Mutant H59q Complex With
Lactose
pdb|2ZGO|B Chain B, Crystal Structure Of Aal Mutant H59q Complex With
Lactose
Length = 167
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 32 SLDPTTHVDSKDII--YSSEHNLSARIYFPNNTNRNQKLPLVVYFHGGAFIFENAFSL 87
S+D V + DI+ +SS NL+A PNNT N ++ GA++ + AF L
Sbjct: 14 SVDLAAPVTTGDIVTFFSSALNLNAGAGNPNNTTLN------LFAENGAYLLQIAFRL 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,143,913
Number of Sequences: 62578
Number of extensions: 503100
Number of successful extensions: 1202
Number of sequences better than 100.0: 200
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 1117
Number of HSP's gapped (non-prelim): 208
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)