BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043195
         (162 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
          Length = 176

 Score =  133 bits (335), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 91/143 (63%), Gaps = 3/143 (2%)

Query: 15  KYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISI 73
           KYDVFLSFRG D RHNFIS L   L R+ I TF DDK L  G + SP L S IE S+ ++
Sbjct: 8   KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67

Query: 74  VIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEER 133
           V+ S+ YA+S WCL+ELV I++ + K    V+P+FY V+P+ VR QTG + + F K   R
Sbjct: 68  VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127

Query: 134 FKEKIDMLQTWRIAMREAANLSG 156
             E  + +  WR A+   A LSG
Sbjct: 128 --EDPEKVLKWRQALTNFAQLSG 148


>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
 pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
          Length = 204

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 96/148 (64%), Gaps = 4/148 (2%)

Query: 12  PQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETF-IDDKLNRGNQISPSLSSAIEGSK 70
           P ++Y+VFLSFRG D R  F   L  +L R KI TF  DD+L +G +I P+L  AI+ SK
Sbjct: 32  PSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSK 91

Query: 71  ISIVIFSKGYASSRWCLNELVKILESKNKYG-QIVVPVFYLVDPSDVRNQTGTIGDSFLK 129
           I + I S GYA S+WCL EL +I+  + +   +I++P+FY+VDPSDVR+QTG    +F K
Sbjct: 92  IYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRK 151

Query: 130 LEERFKEKIDMLQTWRIAMREAANLSGF 157
              +F  +   +Q W+ A+++  +L G+
Sbjct: 152 HANKFDGQ--TIQNWKDALKKVGDLKGW 177


>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
           Paracoccus Denitrificans
 pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
           Paracoccus Denitrificans
 pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
           Paracoccus Denitrificans
 pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
           Paracoccus Denitrificans
          Length = 154

 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 2/125 (1%)

Query: 2   ASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDD-KLNRGNQISP 60
           A  +++ ++     +D+F+S    D + +F+  L   L     E + DD  L  G+ +  
Sbjct: 7   AGPTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRR 65

Query: 61  SLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           S+   +  S+  IV+ S  +    W   EL  + + ++     ++P+++ V   +V + +
Sbjct: 66  SIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFS 125

Query: 121 GTIGD 125
            T+ D
Sbjct: 126 PTMAD 130


>pdb|2KHO|A Chain A, Nmr-Rdc  XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE
           (1-605) Complexed With Adp And Substrate
          Length = 605

 Score = 27.7 bits (60), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 2   ASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPS 61
           A+  + I ++   + DV L +   D       H+N  + R K+E+ ++D +NR   I P 
Sbjct: 265 AAEKAKIELSSAQQTDVNLPYITADATGP--KHMNIKVTRAKLESLVEDLVNR--SIEP- 319

Query: 62  LSSAIEGSKISI 73
           L  A++ + +S+
Sbjct: 320 LKVALQDAGLSV 331


>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe
           Bound To The Atpase Domain Of The Molecular Chaperone
           Dnak
          Length = 383

 Score = 27.3 bits (59), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 2   ASSSSSINMNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPS 61
           A+  + I ++   + DV L +   D       H+N  + R K+E+ ++D +NR  ++   
Sbjct: 265 AAEKAKIELSSAQQTDVNLPYITADATGP--KHMNIKVTRAKLESLVEDLVNRSIEL--- 319

Query: 62  LSSAIEGSKISI 73
           L  A++ + +S+
Sbjct: 320 LKVALQDAGLSV 331


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,447,254
Number of Sequences: 62578
Number of extensions: 162256
Number of successful extensions: 398
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 6
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)