Query 043195
Match_columns 162
No_of_seqs 156 out of 1201
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 03:36:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 3.6E-55 1.2E-59 341.3 10.6 149 10-160 30-180 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 5.7E-54 2E-58 328.7 10.2 147 12-160 5-152 (176)
3 3h16_A TIR protein; bacteria T 100.0 2.1E-37 7.2E-42 231.9 2.9 136 10-151 15-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 1.4E-31 4.7E-36 199.2 -0.4 132 12-148 7-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 2.6E-27 8.7E-32 176.4 1.8 104 12-117 2-111 (149)
6 2js7_A Myeloid differentiation 99.9 1.5E-26 5.2E-31 174.2 5.3 100 12-113 13-117 (160)
7 2j67_A TOLL like receptor 10; 99.9 1.6E-26 5.4E-31 177.0 3.5 105 11-117 31-141 (178)
8 1t3g_A X-linked interleukin-1 99.9 1.2E-25 4.2E-30 169.1 6.3 101 14-114 1-115 (159)
9 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-19 4E-24 164.9 5.6 100 12-113 667-774 (844)
10 1eiw_A Hypothetical protein MT 98.1 2.1E-06 7.3E-11 60.4 4.5 72 14-108 3-74 (111)
11 3hyn_A Putative signal transdu 96.8 0.007 2.4E-07 45.9 8.6 105 15-124 5-133 (189)
12 2f62_A Nucleoside 2-deoxyribos 91.2 0.76 2.6E-05 33.7 7.1 85 12-96 7-97 (161)
13 2khz_A C-MYC-responsive protei 86.2 4.9 0.00017 29.1 8.5 79 14-96 10-102 (165)
14 4fyk_A Deoxyribonucleoside 5'- 77.9 12 0.00041 27.0 7.7 76 17-96 4-93 (152)
15 3ehd_A Uncharacterized conserv 73.6 13 0.00044 27.1 7.0 73 30-107 20-103 (162)
16 2yvq_A Carbamoyl-phosphate syn 70.9 7 0.00024 27.6 4.9 62 18-81 27-107 (143)
17 1s2d_A Purine trans deoxyribos 62.9 31 0.0011 25.0 7.2 78 16-96 8-108 (167)
18 2jug_A TUBC protein; docking d 55.5 8.8 0.0003 24.2 2.7 39 32-70 7-49 (78)
19 1byr_A Protein (endonuclease); 53.6 31 0.0011 23.5 5.7 12 31-42 15-26 (155)
20 1sc3_B Interleukin-1 beta conv 45.6 5.6 0.00019 25.9 0.5 25 19-43 21-45 (88)
21 2ql9_B Caspase-7; cysteine pro 41.1 6.5 0.00022 25.9 0.3 29 15-43 10-47 (97)
22 2d00_A V-type ATP synthase sub 40.4 59 0.002 21.8 5.2 43 37-82 16-58 (109)
23 1qtn_B Caspase-8; apoptosis, d 39.5 6.2 0.00021 26.0 0.0 29 15-43 12-49 (95)
24 2dko_B Caspase-3; low barrier 37.6 8 0.00027 25.9 0.3 29 15-43 16-53 (103)
25 1pyo_B Caspase-2; apoptosis, c 36.9 8.3 0.00028 25.9 0.3 29 15-43 14-51 (105)
26 4hde_A SCO1/SENC family lipopr 36.1 47 0.0016 23.3 4.4 56 54-114 21-79 (170)
27 4a6h_A Phosphatidylinositol 4, 33.1 25 0.00086 23.8 2.3 20 136-155 101-120 (120)
28 3aon_B V-type sodium ATPase su 32.7 27 0.00091 23.9 2.4 41 38-82 16-56 (115)
29 3ro3_B Minsc, peptide of prote 31.8 35 0.0012 16.3 2.0 14 138-151 7-20 (22)
30 2xzd_B Caspase-3; hydrolase-pr 31.5 13 0.00043 25.7 0.5 23 21-43 30-52 (118)
31 4h3d_A 3-dehydroquinate dehydr 31.0 55 0.0019 25.3 4.3 72 35-107 104-175 (258)
32 2efe_B Small GTP-binding prote 29.1 1.3E+02 0.0045 20.2 7.6 61 54-117 69-130 (181)
33 1z0j_A RAB-22, RAS-related pro 27.4 1.4E+02 0.0046 19.7 7.6 62 54-118 63-125 (170)
34 3czq_A Putative polyphosphate 27.1 1E+02 0.0034 24.6 5.2 99 17-116 86-204 (304)
35 2i4r_A V-type ATP synthase sub 26.9 37 0.0013 22.6 2.2 42 38-82 23-65 (102)
36 2fg5_A RAB-22B, RAS-related pr 26.9 1.6E+02 0.0054 20.3 7.3 62 54-118 80-142 (192)
37 3rjm_B Caspase-2; caspase-2, c 26.7 15 0.00051 25.2 0.2 30 14-43 14-52 (117)
38 1f8y_A Nucleoside 2-deoxyribos 26.7 1.3E+02 0.0046 21.2 5.4 84 17-107 5-112 (157)
39 2yry_A Pleckstrin homology dom 26.2 42 0.0015 21.7 2.5 18 137-154 104-121 (122)
40 1v5p_A Pleckstrin homology dom 26.1 42 0.0014 22.7 2.5 20 136-155 103-122 (126)
41 4a8j_B Elongator complex prote 25.8 94 0.0032 24.5 4.7 42 70-115 101-142 (270)
42 1wu7_A Histidyl-tRNA synthetas 24.4 1.3E+02 0.0044 24.6 5.6 59 15-78 332-391 (434)
43 3net_A Histidyl-tRNA synthetas 24.0 96 0.0033 25.9 4.8 61 15-79 371-431 (465)
44 2p5s_A RAS and EF-hand domain 23.4 1.9E+02 0.0065 20.0 6.1 61 54-117 85-146 (199)
45 2coc_A FYVE, rhogef and PH dom 23.2 51 0.0018 22.0 2.4 18 136-153 89-106 (112)
46 3hjn_A DTMP kinase, thymidylat 22.8 75 0.0026 23.1 3.5 31 19-49 2-34 (197)
47 2d9v_A Pleckstrin homology dom 22.2 62 0.0021 21.6 2.8 22 136-157 97-118 (130)
48 2cof_A Protein KIAA1914; PH do 22.2 57 0.002 20.8 2.5 19 136-154 84-102 (107)
49 1v95_A Nuclear receptor coacti 22.2 2E+02 0.0069 19.9 6.4 48 29-77 21-68 (130)
50 3lc0_A Histidyl-tRNA synthetas 22.1 1.5E+02 0.0051 24.7 5.6 59 15-77 361-419 (456)
51 4g84_A Histidine--tRNA ligase, 22.0 1.4E+02 0.0047 24.4 5.4 61 14-77 365-425 (464)
52 1evl_A Threonyl-tRNA synthetas 21.7 1.1E+02 0.0039 24.6 4.8 60 15-78 298-357 (401)
53 2h1v_A Ferrochelatase; rossman 21.2 1.9E+02 0.0066 22.6 5.9 64 30-95 62-134 (310)
54 3sm9_A Mglur3, metabotropic gl 20.8 62 0.0021 26.8 3.0 59 18-76 188-249 (479)
55 3ojo_A CAP5O; rossmann fold, c 20.6 1.2E+02 0.0041 25.2 4.7 53 24-77 329-383 (431)
56 3pid_A UDP-glucose 6-dehydroge 20.6 69 0.0024 26.8 3.2 49 25-73 347-400 (432)
57 2i5f_A Pleckstrin; PH domain, 20.5 64 0.0022 20.2 2.5 17 136-152 92-108 (109)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=3.6e-55 Score=341.25 Aligned_cols=149 Identities=44% Similarity=0.794 Sum_probs=139.6
Q ss_pred CCCCceeeEEEeccccccccchHHHHHHHHccCCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHH
Q 043195 10 MNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLN 88 (162)
Q Consensus 10 ~~~~~~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~ 88 (162)
+.+.++||||||||++|+|+.|++||+++|+++||++|+|++ +++|+.|.++|.+||++|+++|+|||+||++|+||++
T Consensus 30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~ 109 (204)
T 3ozi_A 30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM 109 (204)
T ss_dssp ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence 368899999999999999999999999999999999999976 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh-cCCeeEeEEEeeCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccccccC
Q 043195 89 ELVKILESKNK-YGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160 (162)
Q Consensus 89 El~~~~~~~~~-~~~~viPVfy~v~p~dv~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v~~~~G~~~~ 160 (162)
||++|++|.++ ++++||||||+|+|++||+|+|.||++|.+|++++ +.+++++||.||++||+++||+++
T Consensus 110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~~~~ 180 (204)
T 3ozi_A 110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIG 180 (204)
T ss_dssp HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBEEEC
T ss_pred HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCceecC
Confidence 99999999875 58999999999999999999999999999999987 478999999999999999999987
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=5.7e-54 Score=328.67 Aligned_cols=147 Identities=48% Similarity=0.786 Sum_probs=127.5
Q ss_pred CCceeeEEEeccccccccchHHHHHHHHccCCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHHHH
Q 043195 12 PQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNEL 90 (162)
Q Consensus 12 ~~~~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El 90 (162)
..++||||||||++|+|++|++||+++|+++||++|+|++ +++|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 4578999999999999989999999999999999999976 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCeeEeEEEeeCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccccccC
Q 043195 91 VKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160 (162)
Q Consensus 91 ~~~~~~~~~~~~~viPVfy~v~p~dv~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v~~~~G~~~~ 160 (162)
++|++|.++++++||||||+|+|++||+|+|.||++|.+|+++ .+.+++++||.||++||+++||++.
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~ 152 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG 152 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence 9999999888999999999999999999999999999999987 5689999999999999999999874
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=2.1e-37 Score=231.88 Aligned_cols=136 Identities=18% Similarity=0.319 Sum_probs=117.9
Q ss_pred CCCCceeeEEEeccccccccchHHHHHHHHccCCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHH
Q 043195 10 MNPQIKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLN 88 (162)
Q Consensus 10 ~~~~~~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~ 88 (162)
+++.++|||||||+++| +..|+.+|+.+|+++|+++|+|++ +.+|+.|.++|.++|++|+++|+|+|++|++|.||++
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 36789999999999999 568999999999999999999997 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCeeEeEEEeeCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHh
Q 043195 89 ELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTIGDSFLKLEERFKEKIDMLQTWRIAMREA 151 (162)
Q Consensus 89 El~~~~~~~~~~~~~viPVfy~v~p~dv~~q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL~~v 151 (162)
||..++++...++++||||||+++|++|++|.|.|++.|..... ...+.++-..|.++
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l 151 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS-----TKSVDEIVADLMAI 151 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence 99999998777788999999999999999999999988763222 33455555555544
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=1.4e-31 Score=199.20 Aligned_cols=132 Identities=14% Similarity=0.261 Sum_probs=93.1
Q ss_pred CCceeeEEEeccccccccchHHHHHHHHcc--CCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHH
Q 043195 12 PQIKYDVFLSFRGRDVRHNFISHLNAALCR--KKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLN 88 (162)
Q Consensus 12 ~~~~ydVFISys~~D~~~~f~~~L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~ 88 (162)
.++.|||||||+++|+ .|+.+|..+|++ .|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|++|.||+.
T Consensus 7 ~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~ 84 (146)
T 3ub2_A 7 WSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKY 84 (146)
T ss_dssp TSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHH
T ss_pred CCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHH
Confidence 5689999999999996 589999999998 5999999877 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCeeEeEEEeeCCccccc----ccCchHHHHHHHHHHhhhChHHHHHHHHHH
Q 043195 89 ELVKILESKNKYGQIVVPVFYLVDPSDVRN----QTGTIGDSFLKLEERFKEKIDMLQTWRIAM 148 (162)
Q Consensus 89 El~~~~~~~~~~~~~viPVfy~v~p~dv~~----q~~~f~~~f~~~~~~~~~~~e~~~~W~~aL 148 (162)
|+..|+.+...+..+||||||+++++++.. ...... ....+.|..-.+.|.+|+.||
T Consensus 85 El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 85 QMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence 999999876333447889999988666543 322111 111233333467899999876
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.93 E-value=2.6e-27 Score=176.44 Aligned_cols=104 Identities=17% Similarity=0.330 Sum_probs=92.5
Q ss_pred CCceeeEEEeccccccccchHHH-HHHHHccC--CceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHH
Q 043195 12 PQIKYDVFLSFRGRDVRHNFISH-LNAALCRK--KIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCL 87 (162)
Q Consensus 12 ~~~~ydVFISys~~D~~~~f~~~-L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~ 87 (162)
.++.|||||||+++|. .|+.+ |..+|++. |+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4578999999999996 79986 99999986 999999887 999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhhhcCCeeEeEEEe-eCCcccc
Q 043195 88 NELVKILE-SKNKYGQIVVPVFYL-VDPSDVR 117 (162)
Q Consensus 88 ~El~~~~~-~~~~~~~~viPVfy~-v~p~dv~ 117 (162)
.|+..|+. +.++++.+||||||+ +.+.++.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 99999985 445677899999995 5555554
No 6
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=1.5e-26 Score=174.25 Aligned_cols=100 Identities=18% Similarity=0.311 Sum_probs=90.0
Q ss_pred CCceeeEEEeccccccccchHHHHHHHHccC--CceeeecCC-cCCCCCcchHHHHhhh-hCceEEEEeecCCCCChhHH
Q 043195 12 PQIKYDVFLSFRGRDVRHNFISHLNAALCRK--KIETFIDDK-LNRGNQISPSLSSAIE-GSKISIVIFSKGYASSRWCL 87 (162)
Q Consensus 12 ~~~~ydVFISys~~D~~~~f~~~L~~~L~~~--gi~~f~d~~-~~~G~~i~~~i~~aI~-~S~~~Ivv~S~~y~~S~wc~ 87 (162)
.++.|||||||+++|. .|+.+|..+|+++ |+++|+|++ +.+|+.+.++|.++|+ +|+++|+|+|++|++|.||+
T Consensus 13 ~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 4678999999999994 7999999999984 699999877 9999999999999999 79999999999999999999
Q ss_pred HHHHHHHHHh-hhcCCeeEeEEEeeCC
Q 043195 88 NELVKILESK-NKYGQIVVPVFYLVDP 113 (162)
Q Consensus 88 ~El~~~~~~~-~~~~~~viPVfy~v~p 113 (162)
.|+..|+.+. ++++++||||+|+.-+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999864 4456799999997543
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.92 E-value=1.6e-26 Score=177.01 Aligned_cols=105 Identities=18% Similarity=0.346 Sum_probs=87.9
Q ss_pred CCCceeeEEEeccccccccchHHH-HHHHHcc--CCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCChhH
Q 043195 11 NPQIKYDVFLSFRGRDVRHNFISH-LNAALCR--KKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWC 86 (162)
Q Consensus 11 ~~~~~ydVFISys~~D~~~~f~~~-L~~~L~~--~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc 86 (162)
..++.|||||||+++|+ .|+.. |..+|++ .|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||
T Consensus 31 ~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc 108 (178)
T 2j67_A 31 KRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWC 108 (178)
T ss_dssp CCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGG
T ss_pred CCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchH
Confidence 36688999999999996 79975 9999998 8999999887 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hhhcCCeeEeEEEe-eCCcccc
Q 043195 87 LNELVKILES-KNKYGQIVVPVFYL-VDPSDVR 117 (162)
Q Consensus 87 ~~El~~~~~~-~~~~~~~viPVfy~-v~p~dv~ 117 (162)
+.|+..|+.+ .++++++||||||+ +.+.++.
T Consensus 109 ~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp 141 (178)
T 2j67_A 109 HYEFYFAHHNLFHENSDHIILILLEPIPFYCIP 141 (178)
T ss_dssp GTHHHHTTCC-------CEEEEESSCCCGGGSC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEecCCChHHCC
Confidence 9999999864 45567899999996 4444443
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.2e-25 Score=169.13 Aligned_cols=101 Identities=20% Similarity=0.258 Sum_probs=88.8
Q ss_pred ceeeEEEecccccc---------ccchHHHHHH-HHc-cCCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCC
Q 043195 14 IKYDVFLSFRGRDV---------RHNFISHLNA-ALC-RKKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYA 81 (162)
Q Consensus 14 ~~ydVFISys~~D~---------~~~f~~~L~~-~L~-~~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~ 81 (162)
+.|||||||+++|+ ++.|+.+|.. .|+ +.|+++|+|++ +.+|+.+.++|.++|++|+.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 36999999999996 3578888776 699 79999999887 999999999999999999999999999997
Q ss_pred -CChhHHHHHHHHHHHh-hhcCCeeEeEEEeeCCc
Q 043195 82 -SSRWCLNELVKILESK-NKYGQIVVPVFYLVDPS 114 (162)
Q Consensus 82 -~S~wc~~El~~~~~~~-~~~~~~viPVfy~v~p~ 114 (162)
.|.||+.|+..|+.+. ++++.+||||+|.-.+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999875 56688999999875443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=1.2e-19 Score=164.88 Aligned_cols=100 Identities=17% Similarity=0.340 Sum_probs=89.6
Q ss_pred CCceeeEEEeccccccccchH-HHHHHHHcc-----CCceeeecCC-cCCCCCcchHHHHhhhhCceEEEEeecCCCCCh
Q 043195 12 PQIKYDVFLSFRGRDVRHNFI-SHLNAALCR-----KKIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFSKGYASSR 84 (162)
Q Consensus 12 ~~~~ydVFISys~~D~~~~f~-~~L~~~L~~-----~gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~ 84 (162)
..+.|||||||+++|. .|| ..|...|++ .|+++|++++ +.||+.+.++|.++|++||++|+|+|++|+.|+
T Consensus 667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~ 744 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG 744 (844)
T ss_dssp SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence 5679999999999996 677 779999985 5899999887 999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh-hhcCCeeEeEEEeeCC
Q 043195 85 WCLNELVKILESK-NKYGQIVVPVFYLVDP 113 (162)
Q Consensus 85 wc~~El~~~~~~~-~~~~~~viPVfy~v~p 113 (162)
||..|+..|+.+. ++++.+||||||+..|
T Consensus 745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp STTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 9999999998654 6678899999996443
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.14 E-value=2.1e-06 Score=60.43 Aligned_cols=72 Identities=10% Similarity=-0.006 Sum_probs=52.2
Q ss_pred ceeeEEEeccccccccchHHHHHHHHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHHHHHHH
Q 043195 14 IKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKI 93 (162)
Q Consensus 14 ~~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~ 93 (162)
.+|.+||||+.+|. ...|...|.+.|+.. .| +.|+.|+++|++.++....|+||..|+..+
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 46999999999882 333434443435522 22 678999999999999999999999999776
Q ss_pred HHHhhhcCCeeEeEE
Q 043195 94 LESKNKYGQIVVPVF 108 (162)
Q Consensus 94 ~~~~~~~~~~viPVf 108 (162)
.+ .+..|+-|.
T Consensus 64 ~~----~gkpIigV~ 74 (111)
T 1eiw_A 64 RK----SSKPIITVR 74 (111)
T ss_dssp TT----TTCCEEEEC
T ss_pred HH----cCCCEEEEE
Confidence 54 455666664
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.81 E-value=0.007 Score=45.89 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=70.8
Q ss_pred eeeEEEec--------------cccccccchHHHHHHHHccCCceeeecCC-c----C---C-CCCcchHHHHhhhhCce
Q 043195 15 KYDVFLSF--------------RGRDVRHNFISHLNAALCRKKIETFIDDK-L----N---R-GNQISPSLSSAIEGSKI 71 (162)
Q Consensus 15 ~ydVFISy--------------s~~D~~~~f~~~L~~~L~~~gi~~f~d~~-~----~---~-G~~i~~~i~~aI~~S~~ 71 (162)
+--+|++| ..+|. .....|..--.+..+-.|.|-. . . . -..|.+.|.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 34577887 34453 4556666655555554556642 2 1 2 23577888999999999
Q ss_pred EEEEeecCCCCChhHHHHHHHHHHHhhhcCCeeEeEEEeeC-CcccccccCchH
Q 043195 72 SIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVD-PSDVRNQTGTIG 124 (162)
Q Consensus 72 ~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPVfy~v~-p~dv~~q~~~f~ 124 (162)
+|+++|++...|.|...|+..+++ +.+..||-|..+-. .+++.+-.|.|.
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~ 133 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK 133 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence 999999999999999999998873 24668888765522 345554444443
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=91.22 E-value=0.76 Score=33.70 Aligned_cols=85 Identities=11% Similarity=0.052 Sum_probs=56.0
Q ss_pred CCceeeEEEecc--ccccccchHHHHHHHHccCCceeeecCC--cCCCCCcchHHHHhhhhCceEEEEeec--CCCCChh
Q 043195 12 PQIKYDVFLSFR--GRDVRHNFISHLNAALCRKKIETFIDDK--LNRGNQISPSLSSAIEGSKISIVIFSK--GYASSRW 85 (162)
Q Consensus 12 ~~~~ydVFISys--~~D~~~~f~~~L~~~L~~~gi~~f~d~~--~~~G~~i~~~i~~aI~~S~~~Ivv~S~--~y~~S~w 85 (162)
+...-.+++.-. ..+....+...+...|++.|+.+|.-.+ ......|..+-.++|++|+++|.+++| .-..++-
T Consensus 7 ~~~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~G 86 (161)
T 2f62_A 7 HHMRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCG 86 (161)
T ss_dssp CCCCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHH
T ss_pred hhhhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCc
Confidence 334445555531 2232026889999999999999887433 222233444447899999999999996 3334555
Q ss_pred HHHHHHHHHHH
Q 043195 86 CLNELVKILES 96 (162)
Q Consensus 86 c~~El~~~~~~ 96 (162)
...|+..+...
T Consensus 87 TafEiGyA~Al 97 (161)
T 2f62_A 87 TAFEVGCAAAL 97 (161)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 88899887753
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=86.17 E-value=4.9 Score=29.14 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=51.4
Q ss_pred ceeeEEEecccc--ccccchHHHHHHHHccCCceeeecCCcC-----CCCC-------cchHHHHhhhhCceEEEEeecC
Q 043195 14 IKYDVFLSFRGR--DVRHNFISHLNAALCRKKIETFIDDKLN-----RGNQ-------ISPSLSSAIEGSKISIVIFSKG 79 (162)
Q Consensus 14 ~~ydVFISys~~--D~~~~f~~~L~~~L~~~gi~~f~d~~~~-----~G~~-------i~~~i~~aI~~S~~~Ivv~S~~ 79 (162)
.+..|||+=.-. .........+...|++.| .|+.+.... .|.. +...-.+.|++|+++|+++.
T Consensus 10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~-- 86 (165)
T 2khz_A 10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT-- 86 (165)
T ss_dssp CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS--
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC--
Confidence 346799984222 111224588999999999 886544322 2211 22233579999999999997
Q ss_pred CCCChhHHHHHHHHHHH
Q 043195 80 YASSRWCLNELVKILES 96 (162)
Q Consensus 80 y~~S~wc~~El~~~~~~ 96 (162)
-.+.-+..|+..+...
T Consensus 87 -~~d~Gt~~EiGyA~al 102 (165)
T 2khz_A 87 -QPSLGVGYELGRAVAL 102 (165)
T ss_dssp -SCCHHHHHHHHHHHHT
T ss_pred -CCCCCHHHHHHHHHHC
Confidence 4577789999988753
No 14
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=77.87 E-value=12 Score=27.05 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=49.8
Q ss_pred eEEEe--ccccccccchHHHHHHHHccCCceeeecCC----c-CCCCC-------cchHHHHhhhhCceEEEEeecCCCC
Q 043195 17 DVFLS--FRGRDVRHNFISHLNAALCRKKIETFIDDK----L-NRGNQ-------ISPSLSSAIEGSKISIVIFSKGYAS 82 (162)
Q Consensus 17 dVFIS--ys~~D~~~~f~~~L~~~L~~~gi~~f~d~~----~-~~G~~-------i~~~i~~aI~~S~~~Ivv~S~~y~~ 82 (162)
.|||+ +++.+....+...+...|++.| .|+-..- + ..|+. +.+.-.++|++|+++|.+++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 56665 3332222367799999999999 6754211 1 12222 44555689999999999988 55
Q ss_pred ChhHHHHHHHHHHH
Q 043195 83 SRWCLNELVKILES 96 (162)
Q Consensus 83 S~wc~~El~~~~~~ 96 (162)
|.-...|+..+...
T Consensus 80 d~Gt~~EiG~A~al 93 (152)
T 4fyk_A 80 SLGVGYELGRAVAL 93 (152)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc
Confidence 77788899988754
No 15
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=73.57 E-value=13 Score=27.07 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=50.1
Q ss_pred chHHHHHHHHccC--CceeeecCC--c---CCCCCcc----hHHHHhhhhCceEEEEeecCCCCChhHHHHHHHHHHHhh
Q 043195 30 NFISHLNAALCRK--KIETFIDDK--L---NRGNQIS----PSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKN 98 (162)
Q Consensus 30 ~f~~~L~~~L~~~--gi~~f~d~~--~---~~G~~i~----~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~ 98 (162)
.+..++.++|+.+ |+.+|.-.+ . .++..+. ..-.++|++|+++|.++. ....+.....|+..+...
T Consensus 20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~-- 96 (162)
T 3ehd_A 20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK-- 96 (162)
T ss_dssp HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC--
Confidence 5788899999864 898886332 1 1233333 344568999999999995 344678889999988753
Q ss_pred hcCCeeEeE
Q 043195 99 KYGQIVVPV 107 (162)
Q Consensus 99 ~~~~~viPV 107 (162)
+..|+.+
T Consensus 97 --gkPVi~~ 103 (162)
T 3ehd_A 97 --GIPVVAL 103 (162)
T ss_dssp --TCCEEEE
T ss_pred --CCEEEEE
Confidence 4455554
No 16
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=70.92 E-value=7 Score=27.63 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=40.8
Q ss_pred EEEeccccccccchHHHHHHHHccCCceeeecC-------------C-cC---CC-C-CcchHHHHhhhhCceEEEEeec
Q 043195 18 VFLSFRGRDVRHNFISHLNAALCRKKIETFIDD-------------K-LN---RG-N-QISPSLSSAIEGSKISIVIFSK 78 (162)
Q Consensus 18 VFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~-------------~-~~---~G-~-~i~~~i~~aI~~S~~~Ivv~S~ 78 (162)
||||.+..|. .-+-.+.+.|.+.|++++--. . +. -| + .-.++|.+.|++-++-+||..|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999987764 345557778888888876211 0 11 11 1 0115789999999999999988
Q ss_pred CCC
Q 043195 79 GYA 81 (162)
Q Consensus 79 ~y~ 81 (162)
+-.
T Consensus 105 ~~~ 107 (143)
T 2yvq_A 105 NNN 107 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 17
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=62.86 E-value=31 Score=25.01 Aligned_cols=78 Identities=6% Similarity=0.105 Sum_probs=52.4
Q ss_pred eeEEEe---ccccccccchHHHHHHHHccC--CceeeecCC--c--------CCC--------CCcchHHHHhhhhCceE
Q 043195 16 YDVFLS---FRGRDVRHNFISHLNAALCRK--KIETFIDDK--L--------NRG--------NQISPSLSSAIEGSKIS 72 (162)
Q Consensus 16 ydVFIS---ys~~D~~~~f~~~L~~~L~~~--gi~~f~d~~--~--------~~G--------~~i~~~i~~aI~~S~~~ 72 (162)
-.|||. |+..+ ..+..++.+.|++. |+.+|.-.+ . ..| ..|.+.-.++|++|+++
T Consensus 8 ~kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 85 (167)
T 1s2d_A 8 GKIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCG 85 (167)
T ss_dssp EEEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEE
T ss_pred cEEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEE
Confidence 357776 33322 35889999999999 888886322 2 111 12233445789999999
Q ss_pred EEEeecCCCCChhHHHHHHHHHHH
Q 043195 73 IVIFSKGYASSRWCLNELVKILES 96 (162)
Q Consensus 73 Ivv~S~~y~~S~wc~~El~~~~~~ 96 (162)
|.++...-. ++-...|+..+...
T Consensus 86 VA~ldg~~~-D~GTa~EiGyA~al 108 (167)
T 1s2d_A 86 VFLYDMDQL-DDGSAFXIGFMRAM 108 (167)
T ss_dssp EEEEESSSC-CHHHHHHHHHHHHT
T ss_pred EEECCCCCC-CCCceeehhhHhhC
Confidence 999987554 45677899887653
No 18
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=55.48 E-value=8.8 Score=24.18 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=28.0
Q ss_pred HHHHHHHHccCCceeeecCC-cC---CCCCcchHHHHhhhhCc
Q 043195 32 ISHLNAALCRKKIETFIDDK-LN---RGNQISPSLSSAIEGSK 70 (162)
Q Consensus 32 ~~~L~~~L~~~gi~~f~d~~-~~---~G~~i~~~i~~aI~~S~ 70 (162)
+..|...|.+.||..|.|.+ +. |-..+.+++...+.+.+
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 34577889999999999876 42 44467777777776544
No 19
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=53.56 E-value=31 Score=23.52 Aligned_cols=12 Identities=8% Similarity=-0.172 Sum_probs=6.0
Q ss_pred hHHHHHHHHccC
Q 043195 31 FISHLNAALCRK 42 (162)
Q Consensus 31 f~~~L~~~L~~~ 42 (162)
+...|...+.+.
T Consensus 15 ~~~~~~~~i~~A 26 (155)
T 1byr_A 15 ARVLVLSAIDSA 26 (155)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 20
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=45.64 E-value=5.6 Score=25.93 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=17.2
Q ss_pred EEeccccccccchHHHHHHHHccCC
Q 043195 19 FLSFRGRDVRHNFISHLNAALCRKK 43 (162)
Q Consensus 19 FISys~~D~~~~f~~~L~~~L~~~g 43 (162)
|.|||+......|+..|++.|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 3455555445679999999997644
No 21
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=41.08 E-value=6.5 Score=25.94 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=18.6
Q ss_pred eeeEEEecc---------ccccccchHHHHHHHHccCC
Q 043195 15 KYDVFLSFR---------GRDVRHNFISHLNAALCRKK 43 (162)
Q Consensus 15 ~ydVFISys---------~~D~~~~f~~~L~~~L~~~g 43 (162)
.-|.+++|+ +.+....|+..|++.|++.|
T Consensus 10 ~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 10 EADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 456666554 44344578888888887644
No 22
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=40.39 E-value=59 Score=21.77 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=30.3
Q ss_pred HHHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEeecCCCC
Q 043195 37 AALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYAS 82 (162)
Q Consensus 37 ~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~ 82 (162)
.-+.-.|+.+|.-. ..+.+...+.+.+++.++.|++++++.+.
T Consensus 16 ~GFrLaGi~~~~v~---~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 16 QGFRLAGLEGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHTTSEEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHcCCeEEEeC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 34455688887532 22345556667777789999999999988
No 23
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=39.52 E-value=6.2 Score=26.04 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=18.8
Q ss_pred eeeEEEecccc---------ccccchHHHHHHHHccCC
Q 043195 15 KYDVFLSFRGR---------DVRHNFISHLNAALCRKK 43 (162)
Q Consensus 15 ~ydVFISys~~---------D~~~~f~~~L~~~L~~~g 43 (162)
.-|.+++|+.. +....|+..|++.|++.|
T Consensus 12 ~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 12 EADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp TCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred CCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 56777776533 334568888888887643
No 24
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=37.55 E-value=8 Score=25.88 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=18.9
Q ss_pred eeeEEEecccc---------ccccchHHHHHHHHccCC
Q 043195 15 KYDVFLSFRGR---------DVRHNFISHLNAALCRKK 43 (162)
Q Consensus 15 ~ydVFISys~~---------D~~~~f~~~L~~~L~~~g 43 (162)
.-|.+++|+.. .....|+..|++.|++.|
T Consensus 16 ~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 16 EADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 45777766533 334578888888887643
No 25
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=36.91 E-value=8.3 Score=25.90 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=18.8
Q ss_pred eeeEEEecc---------ccccccchHHHHHHHHccCC
Q 043195 15 KYDVFLSFR---------GRDVRHNFISHLNAALCRKK 43 (162)
Q Consensus 15 ~ydVFISys---------~~D~~~~f~~~L~~~L~~~g 43 (162)
.-|.+++|+ +.+....|+..|++.|++.+
T Consensus 14 ~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 14 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp SCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHHC
Confidence 456666654 33344578888988887643
No 26
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=36.12 E-value=47 Score=23.26 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=29.7
Q ss_pred CCCCcchHHHHhhhhCceEEEEeecCCCCChhHHHHH---HHHHHHhhhcCCeeEeEEEeeCCc
Q 043195 54 RGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNEL---VKILESKNKYGQIVVPVFYLVDPS 114 (162)
Q Consensus 54 ~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El---~~~~~~~~~~~~~viPVfy~v~p~ 114 (162)
-|+.+.. ...+. +++|+-|--..+ ..||..++ ..+.+..++.+..|..|+..++|.
T Consensus 21 ~G~~v~l---~d~~G-k~vll~F~~t~C-p~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 21 DGKPFGT---KDLKG-KVWVADFMFTNC-QTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp TSCEEEH---HHHTT-SCEEEEEECTTC-SSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CCCEEeH---HHhCC-CEEEEEEECCCC-CCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 3555542 22333 455554432222 23785544 444444444566788888888874
No 27
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=33.05 E-value=25 Score=23.83 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=15.7
Q ss_pred hChHHHHHHHHHHHHhhccc
Q 043195 136 EKIDMLQTWRIAMREAANLS 155 (162)
Q Consensus 136 ~~~e~~~~W~~aL~~v~~~~ 155 (162)
.+.+..++|..||..++.++
T Consensus 101 ~s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 101 DSYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SSHHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 35788999999999998764
No 28
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=32.71 E-value=27 Score=23.87 Aligned_cols=41 Identities=5% Similarity=0.113 Sum_probs=28.0
Q ss_pred HHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEeecCCCC
Q 043195 38 ALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYAS 82 (162)
Q Consensus 38 ~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~ 82 (162)
-+.-.|+.+|... .-+.+...+.+.+++ ++.|++++++.+.
T Consensus 16 GFrLaGie~~~v~---~~ee~~~~~~~l~~~-digIIlIte~ia~ 56 (115)
T 3aon_B 16 PFRLFGFDVQHGT---TKTEIRKTIDEMAKN-EYGVIYITEQCAN 56 (115)
T ss_dssp GGGGGTCEEECCC---SHHHHHHHHHHHHHT-TEEEEEEEHHHHT
T ss_pred HHHHcCCeEEEeC---CHHHHHHHHHHHHhc-CceEEEEeHHHHH
Confidence 3455688887532 123455566666777 9999999999876
No 29
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=31.77 E-value=35 Score=16.34 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHh
Q 043195 138 IDMLQTWRIAMREA 151 (162)
Q Consensus 138 ~e~~~~W~~aL~~v 151 (162)
-+.|++|.+-|...
T Consensus 7 vDSV~rWmeDLr~M 20 (22)
T 3ro3_B 7 VDSVQRWMEDLKLM 20 (26)
T ss_pred hHHHHHHHHHHHhh
Confidence 47899999988754
No 30
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=31.53 E-value=13 Score=25.66 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=14.8
Q ss_pred eccccccccchHHHHHHHHccCC
Q 043195 21 SFRGRDVRHNFISHLNAALCRKK 43 (162)
Q Consensus 21 Sys~~D~~~~f~~~L~~~L~~~g 43 (162)
|||.......|+..|++.|++.+
T Consensus 30 S~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 30 SWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp CCEETTTEEHHHHHHHHHHHHHT
T ss_pred eeEeCCCCCccHHHHHHHHHHhC
Confidence 34444334578899998887643
No 31
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=30.97 E-value=55 Score=25.26 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=40.0
Q ss_pred HHHHHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEeecCCCCChhHHHHHHHHHHHhhhcCCeeEeE
Q 043195 35 LNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPV 107 (162)
Q Consensus 35 L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPV 107 (162)
|...+...|.--|+|-++..++.+..++.+..+....-| |.|-|..+..|-.+|+...+......+.-|+=|
T Consensus 104 ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~ki-I~S~Hdf~~TP~~~el~~~~~~~~~~gaDIvKi 175 (258)
T 4h3d_A 104 LNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKV-IISNHDFNKTPKKEEIVSRLCRMQELGADLPKI 175 (258)
T ss_dssp HHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEE-EEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEE-EEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 334444445433566554444444455555555555444 556665566677788888877665555434333
No 32
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=29.13 E-value=1.3e+02 Score=20.16 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=33.7
Q ss_pred CCCC-cchHHHHhhhhCceEEEEeecCCCCChhHHHHHHHHHHHhhhcCCeeEeEEEeeCCcccc
Q 043195 54 RGNQ-ISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVR 117 (162)
Q Consensus 54 ~G~~-i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPVfy~v~p~dv~ 117 (162)
+|.. +.......++.++.+|+|++.. +....+++...++........-+|+++-+...|+.
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 69 AGQERYHSLAPMYYRGAAAAIIVFDVT---NQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETT---CHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred CCChhhhhhhHHHhccCCEEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 5643 3334456788899999999854 34444555554443322222234555544555554
No 33
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=27.43 E-value=1.4e+02 Score=19.74 Aligned_cols=62 Identities=13% Similarity=0.173 Sum_probs=34.4
Q ss_pred CCC-CcchHHHHhhhhCceEEEEeecCCCCChhHHHHHHHHHHHhhhcCCeeEeEEEeeCCccccc
Q 043195 54 RGN-QISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRN 118 (162)
Q Consensus 54 ~G~-~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPVfy~v~p~dv~~ 118 (162)
||. .........+..++.+|+|++..-.. ..+++...++........-+||++=....|+.+
T Consensus 63 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 63 AGLERFRALAPMYYRGSAAAIIVYDITKEE---TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred CCchhhhcccHhhCcCCCEEEEEEECcCHH---HHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 553 23334456778999999999865433 334444444433333333456665555666544
No 34
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=27.06 E-value=1e+02 Score=24.64 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=57.7
Q ss_pred eEEEeccccccc--cchHHHHHHHHccCCceeeecCC---cCCCCCcchHHHHhhhhCceEEEEeecCCCCCh-------
Q 043195 17 DVFLSFRGRDVR--HNFISHLNAALCRKKIETFIDDK---LNRGNQISPSLSSAIEGSKISIVIFSKGYASSR------- 84 (162)
Q Consensus 17 dVFISys~~D~~--~~f~~~L~~~L~~~gi~~f~d~~---~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~S~------- 84 (162)
-|||-|-|-|.. -+-+.+|...|..+|++|..-.. -+.+..+...+..++-. +--|+|+-+.+-++.
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~-~G~IvIfDRswYs~v~~~rv~g 164 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPT-AGEFVLFDRSWYNRAGVEPVMG 164 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCC-TTCEEEEEECGGGGTTHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhccc-CCeEEEEECCcchHHHHHHHhc
Confidence 589999877752 46788999999999998765332 22333444444445432 334556666554432
Q ss_pred hHHH-HHHHHHHH-------hhhcCCeeEeEEEeeCCccc
Q 043195 85 WCLN-ELVKILES-------KNKYGQIVVPVFYLVDPSDV 116 (162)
Q Consensus 85 wc~~-El~~~~~~-------~~~~~~~viPVfy~v~p~dv 116 (162)
.|-. |....++. ....+..++-+|++++|..-
T Consensus 165 ~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq 204 (304)
T 3czq_A 165 FCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQ 204 (304)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHH
Confidence 2222 22222221 12356788888899988764
No 35
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=26.95 E-value=37 Score=22.65 Aligned_cols=42 Identities=12% Similarity=0.283 Sum_probs=28.7
Q ss_pred HHccCCceeee-cCCcCCCCCcchHHHHhhhhCceEEEEeecCCCC
Q 043195 38 ALCRKKIETFI-DDKLNRGNQISPSLSSAIEGSKISIVIFSKGYAS 82 (162)
Q Consensus 38 ~L~~~gi~~f~-d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~y~~ 82 (162)
-+.-.|+..+. ..+ -+.+.+.+.+.+++.++.|++++++.+.
T Consensus 23 GFrLaGi~~~~~~~~---~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 23 GFMLAGISDIYEVTS---DEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHTTCCCEEECCS---HHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHcCCCcccCCCC---HHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 34456877665 221 1345556667777789999999999887
No 36
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=26.94 E-value=1.6e+02 Score=20.33 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=33.9
Q ss_pred CCCC-cchHHHHhhhhCceEEEEeecCCCCChhHHHHHHHHHHHhhhcCCeeEeEEEeeCCccccc
Q 043195 54 RGNQ-ISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRN 118 (162)
Q Consensus 54 ~G~~-i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPVfy~v~p~dv~~ 118 (162)
+|.. +.......+..++.+|+|++..-.. ..+++...++........-+|+++=....|+.+
T Consensus 80 ~G~~~~~~~~~~~~~~~d~iilV~d~~~~~---s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQD---SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCTH---HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred CCchhhHhhhHHhhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 5543 3334456788999999999865433 344444444333222222245555555666644
No 37
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=26.74 E-value=15 Score=25.24 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=19.6
Q ss_pred ceeeEEEecccc---------ccccchHHHHHHHHccCC
Q 043195 14 IKYDVFLSFRGR---------DVRHNFISHLNAALCRKK 43 (162)
Q Consensus 14 ~~ydVFISys~~---------D~~~~f~~~L~~~L~~~g 43 (162)
..-|.+++|+.. .....|+..|++.|++.+
T Consensus 14 ~eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 14 TRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp SSCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 356777776543 233578888888887643
No 38
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=26.67 E-value=1.3e+02 Score=21.25 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=52.7
Q ss_pred eEEEe---ccccccccchHHHHHHHHccCCc----eeeecCC--c--------CCC-------CCcchHHHHhhhhCceE
Q 043195 17 DVFLS---FRGRDVRHNFISHLNAALCRKKI----ETFIDDK--L--------NRG-------NQISPSLSSAIEGSKIS 72 (162)
Q Consensus 17 dVFIS---ys~~D~~~~f~~~L~~~L~~~gi----~~f~d~~--~--------~~G-------~~i~~~i~~aI~~S~~~ 72 (162)
.|||. |+..+ .....++...|+.+|. .+|.-.+ . ..+ ..|.+.-.++|++|+++
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 82 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIM 82 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEE
Confidence 46665 33332 3578899999998885 6765322 2 111 12333445789999999
Q ss_pred EEEeecCCCCChhHHHHHHHHHHHhhhcCCeeEeE
Q 043195 73 IVIFSKGYASSRWCLNELVKILESKNKYGQIVVPV 107 (162)
Q Consensus 73 Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPV 107 (162)
|.++...-. ++-...|+..+... +..|+-+
T Consensus 83 vA~ldg~~~-D~GT~~EiGyA~A~----gkPVv~~ 112 (157)
T 1f8y_A 83 LGVYIPDEE-DVGLGMELGYALSQ----GKYVLLV 112 (157)
T ss_dssp EEECCGGGC-CHHHHHHHHHHHHT----TCEEEEE
T ss_pred EEEcCCCCC-CccHHHHHHHHHHC----CCeEEEE
Confidence 999985433 45678899887654 4455443
No 39
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.20 E-value=42 Score=21.71 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHHHhhcc
Q 043195 137 KIDMLQTWRIAMREAANL 154 (162)
Q Consensus 137 ~~e~~~~W~~aL~~v~~~ 154 (162)
+.+..+.|..||..++.+
T Consensus 104 s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 104 SPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 578889999999998765
No 40
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=26.13 E-value=42 Score=22.75 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=16.9
Q ss_pred hChHHHHHHHHHHHHhhccc
Q 043195 136 EKIDMLQTWRIAMREAANLS 155 (162)
Q Consensus 136 ~~~e~~~~W~~aL~~v~~~~ 155 (162)
++.+..+.|..||..++.+.
T Consensus 103 ~s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 103 NDQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SSHHHHHHHHHHHHHTTTTS
T ss_pred CCHHHHHHHHHHHHHHHhcC
Confidence 35788999999999998764
No 41
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=25.78 E-value=94 Score=24.53 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=30.0
Q ss_pred ceEEEEeecCCCCChhHHHHHHHHHHHhhhcCCeeEeEEEeeCCcc
Q 043195 70 KISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSD 115 (162)
Q Consensus 70 ~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPVfy~v~p~d 115 (162)
+..|+|=|=||..+ .+|...+...-.-.-.++-||+..-|..
T Consensus 101 k~LVIIDSLN~l~~----~~L~~FlsSi~sP~~sLv~vYH~DvP~~ 142 (270)
T 4a8j_B 101 KHMVIIDSLNYIST----EYITRFLSEIASPHCTMVATYHKDIKDE 142 (270)
T ss_dssp CEEEEESCGGGSCG----GGHHHHHHHHCCTTEEEEEEEETTSCCC
T ss_pred ceEEEEecCcchhh----hhHHHHHHHhhcCCcEEEEEecCCCCCC
Confidence 67999999999997 5777777655444567888887544433
No 42
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=24.37 E-value=1.3e+02 Score=24.60 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=36.7
Q ss_pred eeeEEEeccccccccchHHHHHHHHccCCceeeecCCcCCCCCcchHHHHhhh-hCceEEEEeec
Q 043195 15 KYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIE-GSKISIVIFSK 78 (162)
Q Consensus 15 ~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~-~S~~~Ivv~S~ 78 (162)
.++|+|..-+++. ...+..+...|.+.|+.|-+|.. +..+...+..|-. ... .++|+.+
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~-~~iiiG~ 391 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGAD-FAVIFGE 391 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCS-EEEEEEH
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCC-EEEEECc
Confidence 3789865544443 35788999999999999988753 2344444444433 333 4444443
No 43
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=24.00 E-value=96 Score=25.85 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=40.0
Q ss_pred eeeEEEeccccccccchHHHHHHHHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEeecC
Q 043195 15 KYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSKG 79 (162)
Q Consensus 15 ~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~~ 79 (162)
.+||+|-.-+++. ...+..+...|++.|++|-+|.. +..+...+..|-..---.++|+.++
T Consensus 371 p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 371 PAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp SCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEECch
Confidence 4799976645443 35788999999999999988753 3345545555544433455665554
No 44
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=23.36 E-value=1.9e+02 Score=20.02 Aligned_cols=61 Identities=10% Similarity=0.211 Sum_probs=32.8
Q ss_pred CCC-CcchHHHHhhhhCceEEEEeecCCCCChhHHHHHHHHHHHhhhcCCeeEeEEEeeCCcccc
Q 043195 54 RGN-QISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVR 117 (162)
Q Consensus 54 ~G~-~i~~~i~~aI~~S~~~Ivv~S~~y~~S~wc~~El~~~~~~~~~~~~~viPVfy~v~p~dv~ 117 (162)
+|. .+.......+..++.+|+|++..- ....+++...++........=+||++-+...|+.
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVTC---EKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETTC---HHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 554 344445567889999999998643 3334444433332222221234666655666654
No 45
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=23.20 E-value=51 Score=21.95 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.1
Q ss_pred hChHHHHHHHHHHHHhhc
Q 043195 136 EKIDMLQTWRIAMREAAN 153 (162)
Q Consensus 136 ~~~e~~~~W~~aL~~v~~ 153 (162)
++.+..++|.+||..++.
T Consensus 89 ~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 89 SSAELQQQWLETLSTAAH 106 (112)
T ss_dssp SSHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 358899999999998764
No 46
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=22.85 E-value=75 Score=23.06 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=23.8
Q ss_pred EEeccccccc--cchHHHHHHHHccCCceeeec
Q 043195 19 FLSFRGRDVR--HNFISHLNAALCRKKIETFID 49 (162)
Q Consensus 19 FISys~~D~~--~~f~~~L~~~L~~~gi~~f~d 49 (162)
||.+-|-|.. .+-+..|.+.|+.+|+++..-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 7888777742 467888999999999887543
No 47
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.23 E-value=62 Score=21.59 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=17.5
Q ss_pred hChHHHHHHHHHHHHhhccccc
Q 043195 136 EKIDMLQTWRIAMREAANLSGF 157 (162)
Q Consensus 136 ~~~e~~~~W~~aL~~v~~~~G~ 157 (162)
++.+..+.|..||..+...+..
T Consensus 97 ~s~~e~~~Wi~al~~a~~~~~~ 118 (130)
T 2d9v_A 97 ETRDDAIAWKTALMEANSTPAP 118 (130)
T ss_dssp SSHHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCC
Confidence 3578889999999999876543
No 48
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.22 E-value=57 Score=20.76 Aligned_cols=19 Identities=5% Similarity=0.146 Sum_probs=15.4
Q ss_pred hChHHHHHHHHHHHHhhcc
Q 043195 136 EKIDMLQTWRIAMREAANL 154 (162)
Q Consensus 136 ~~~e~~~~W~~aL~~v~~~ 154 (162)
.+.+..++|..||..++..
T Consensus 84 ~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 84 KSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp SSHHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 3578889999999988754
No 49
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=22.22 E-value=2e+02 Score=19.92 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=32.0
Q ss_pred cchHHHHHHHHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEee
Q 043195 29 HNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFS 77 (162)
Q Consensus 29 ~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S 77 (162)
..++..+...|...|+.+=+|.. ..++.+...|.++-.+---.++|+.
T Consensus 21 ~~YA~~V~~~L~~~GiRvevD~~-r~~e~Lg~kIR~a~~~kvPy~lVVG 68 (130)
T 1v95_A 21 KDYAESVGRKVRDLGMVVDLIFL-NTEVSLSQALEDVSRGGSPFAIVIT 68 (130)
T ss_dssp GHHHHHHHHHHHTTTCCEEEEEC-TTSSCHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEecC-CCCCcHHHHHHHHHHcCCCEEEEEe
Confidence 47999999999999999877541 2266666666665443333444444
No 50
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=22.11 E-value=1.5e+02 Score=24.72 Aligned_cols=59 Identities=10% Similarity=-0.035 Sum_probs=38.3
Q ss_pred eeeEEEeccccccccchHHHHHHHHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEee
Q 043195 15 KYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFS 77 (162)
Q Consensus 15 ~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S 77 (162)
..||||..-+++.. .-+-.+...|++.|+++-++.. +..+..++..|-+.--..++++.
T Consensus 361 ~~~v~v~~~~~~~~-~~a~~la~~LR~~Gi~ve~~~~---~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 361 VVDDVVIPFDESMR-PHALAVLRRLRDAGRSADIILD---KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CEEEEEEESSGGGH-HHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCcEEEEEcCHHHH-HHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHcCCCEEEEEC
Confidence 47888766555542 4677899999999999977642 33455566555554444555554
No 51
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=22.04 E-value=1.4e+02 Score=24.45 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=37.3
Q ss_pred ceeeEEEeccccccccchHHHHHHHHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEee
Q 043195 14 IKYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFS 77 (162)
Q Consensus 14 ~~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S 77 (162)
...||+|..-+++. ...+-.|...|.+.|+++-+|.. .+..+..++..|=+.---.++|+.
T Consensus 365 ~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~~~viiG 425 (464)
T 4g84_A 365 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIPLVAIIG 425 (464)
T ss_dssp CCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC--SSCCHHHHHHHHHHHTCCEEEECC
T ss_pred ccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCCEEEEEC
Confidence 45789988766554 35677899999999999866532 223454455544443223444443
No 52
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=21.74 E-value=1.1e+02 Score=24.63 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=37.9
Q ss_pred eeeEEEeccccccccchHHHHHHHHccCCceeeecCCcCCCCCcchHHHHhhhhCceEEEEeec
Q 043195 15 KYDVFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRGNQISPSLSSAIEGSKISIVIFSK 78 (162)
Q Consensus 15 ~ydVFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G~~i~~~i~~aI~~S~~~Ivv~S~ 78 (162)
.++|+|---+++. ...+..|...|++.|+.+-+|.. +..+...+..|-..---.++|+.+
T Consensus 298 p~~v~vi~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A~~~g~p~~iiiG~ 357 (401)
T 1evl_A 298 PVQVVIMNITDSQ-SEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVCGD 357 (401)
T ss_dssp SSCEEEEESSGGG-HHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEECH
T ss_pred CeEEEEEecCHHH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEECc
Confidence 3788876544433 46788999999999999988763 334555555544432234444443
No 53
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=21.18 E-value=1.9e+02 Score=22.64 Aligned_cols=64 Identities=8% Similarity=0.107 Sum_probs=38.1
Q ss_pred chHHHHHHHHccCC----ceeeecCCcCCCCCcchHHHHhhhh---CceEEEEeecCCCCCh--hHHHHHHHHHH
Q 043195 30 NFISHLNAALCRKK----IETFIDDKLNRGNQISPSLSSAIEG---SKISIVIFSKGYASSR--WCLNELVKILE 95 (162)
Q Consensus 30 ~f~~~L~~~L~~~g----i~~f~d~~~~~G~~i~~~i~~aI~~---S~~~Ivv~S~~y~~S~--wc~~El~~~~~ 95 (162)
..+..|.+.|.+.| +.|++- ++-|.+..++..+.+.+ .++.++.+.|.|..+. -..+++..++.
T Consensus 62 ~q~~~L~~~L~~~~~~~~~~V~~a--mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i~~~l~ 134 (310)
T 2h1v_A 62 QQAHNLEQHLNEIQDEITFKAYIG--LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAE 134 (310)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEEEE--ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCceEeeh--hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHHHH
Confidence 34566777776543 445432 55566555555555543 4578888999886543 34556666554
No 54
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=20.78 E-value=62 Score=26.78 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=33.5
Q ss_pred EEEeccccccccchHHHHHHHHccCCceeeecCCcCCC--C-CcchHHHHhhhhCceEEEEe
Q 043195 18 VFLSFRGRDVRHNFISHLNAALCRKKIETFIDDKLNRG--N-QISPSLSSAIEGSKISIVIF 76 (162)
Q Consensus 18 VFISys~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~G--~-~i~~~i~~aI~~S~~~Ivv~ 76 (162)
|-|=++..|....++..|.+++++.|+.+-....+..+ + .+...+.+.|+.+..-+||+
T Consensus 188 V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~ 249 (479)
T 3sm9_A 188 VSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVL 249 (479)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEE
T ss_pred EEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEE
Confidence 33334444444578888999999999876544444332 2 23333336677655544444
No 55
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=20.63 E-value=1.2e+02 Score=25.23 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=37.9
Q ss_pred ccccccchHHHHHHHHccC-CceeeecCC-cCCCCCcchHHHHhhhhCceEEEEee
Q 043195 24 GRDVRHNFISHLNAALCRK-KIETFIDDK-LNRGNQISPSLSSAIEGSKISIVIFS 77 (162)
Q Consensus 24 ~~D~~~~f~~~L~~~L~~~-gi~~f~d~~-~~~G~~i~~~i~~aI~~S~~~Ivv~S 77 (162)
..|.|++=+-.|.+.|.++ |..|...+- .... .....+.++++.++..|++..
T Consensus 329 tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t~ 383 (431)
T 3ojo_A 329 VDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILSD 383 (431)
T ss_dssp SCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECSC
T ss_pred CcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEecC
Confidence 3577888889999999999 998876554 3322 333456788999998666544
No 56
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=20.60 E-value=69 Score=26.81 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=31.7
Q ss_pred cccccchHHHHHHHHccCCceeeecCC-cC----CCCCcchHHHHhhhhCceEE
Q 043195 25 RDVRHNFISHLNAALCRKKIETFIDDK-LN----RGNQISPSLSSAIEGSKISI 73 (162)
Q Consensus 25 ~D~~~~f~~~L~~~L~~~gi~~f~d~~-~~----~G~~i~~~i~~aI~~S~~~I 73 (162)
.|.|++=+-.|.+.|.++|..|...+- .. .|..+.+.+.++++++++.|
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 467778888999999999988876443 32 23334467788899998854
No 57
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=20.53 E-value=64 Score=20.24 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=14.0
Q ss_pred hChHHHHHHHHHHHHhh
Q 043195 136 EKIDMLQTWRIAMREAA 152 (162)
Q Consensus 136 ~~~e~~~~W~~aL~~v~ 152 (162)
.+.+..+.|..||..++
T Consensus 92 ~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 92 ATPKERTEWIKAIQMAS 108 (109)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 35788899999999875
Done!