Query 043196
Match_columns 227
No_of_seqs 135 out of 684
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:27:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 2.8E-78 6E-83 523.8 15.9 197 21-219 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 1.6E-77 3.4E-82 519.1 16.4 198 22-220 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 3.2E-77 6.9E-82 519.1 15.4 196 22-220 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 1.1E-73 2.4E-78 494.4 6.4 193 26-220 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 2.7E-59 5.9E-64 387.1 14.3 149 22-219 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 8.9E-55 1.9E-59 358.5 13.9 149 22-220 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 2.7E-49 5.8E-54 326.5 13.5 144 22-218 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 98.7 4.5E-07 9.7E-12 75.3 13.5 75 95-224 71-148 (155)
9 cd09216 GH64-LPHase-like glyco 91.0 0.31 6.7E-06 45.7 4.5 75 46-131 61-142 (353)
10 cd09220 GH64-GluB-like glycosi 88.6 1.1 2.4E-05 42.3 6.1 77 46-131 62-145 (369)
11 cd09214 GH64-like glycosyl hyd 68.1 3.4 7.4E-05 38.3 2.0 32 99-132 124-155 (319)
12 cd09214 GH64-like glycosyl hyd 67.2 5.8 0.00013 36.8 3.3 23 180-202 275-299 (319)
13 cd09220 GH64-GluB-like glycosi 59.5 10 0.00022 35.9 3.5 24 179-202 319-344 (369)
14 TIGR00192 urease_beta urease, 55.2 26 0.00057 27.3 4.5 51 16-67 18-94 (101)
15 cd09216 GH64-LPHase-like glyco 54.2 13 0.00029 34.9 3.3 23 180-202 309-333 (353)
16 cd00407 Urease_beta Urease bet 53.5 29 0.00063 27.1 4.5 50 17-67 19-94 (101)
17 PRK13202 ureB urease subunit b 51.6 38 0.00081 26.6 4.9 49 18-67 21-95 (104)
18 PRK13203 ureB urease subunit b 50.1 41 0.00089 26.3 4.9 50 17-67 19-94 (102)
19 PRK13201 ureB urease subunit b 41.7 53 0.0011 26.9 4.5 51 16-67 18-94 (136)
20 PRK13204 ureB urease subunit b 39.7 57 0.0012 27.4 4.5 52 16-68 41-118 (159)
21 PF11142 DUF2917: Protein of u 38.9 32 0.00068 24.2 2.5 23 42-64 2-28 (63)
22 PHA03094 dUTPase; Provisional 36.6 38 0.00082 27.6 3.0 29 41-70 35-69 (144)
23 PRK13205 ureB urease subunit b 36.5 69 0.0015 26.9 4.5 52 16-68 18-95 (162)
24 PRK13198 ureB urease subunit b 36.1 71 0.0015 26.8 4.5 51 17-68 47-123 (158)
25 PF02495 7kD_coat: 7kD viral c 35.7 61 0.0013 22.3 3.5 13 18-31 32-44 (59)
26 PF00699 Urease_beta: Urease b 34.3 63 0.0014 25.2 3.7 49 17-66 18-92 (100)
27 PRK13192 bifunctional urease s 34.0 82 0.0018 27.6 4.8 50 17-67 128-203 (208)
28 PRK13986 urease subunit alpha; 33.5 81 0.0018 28.0 4.7 52 16-68 123-200 (225)
29 PF00947 Pico_P2A: Picornaviru 31.4 22 0.00048 28.8 0.8 18 75-92 83-100 (127)
30 PF05991 NYN_YacP: YacP-like N 26.6 21 0.00044 29.7 -0.1 10 118-127 2-11 (166)
31 PRK15188 fimbrial chaperone pr 26.2 2.4E+02 0.0051 24.8 6.5 35 19-54 44-94 (228)
32 PF08434 CLCA_N: Calcium-activ 22.0 1.1E+02 0.0024 27.7 3.7 38 1-38 1-40 (262)
33 PF06282 DUF1036: Protein of u 22.0 1.7E+02 0.0038 22.8 4.4 34 19-52 3-44 (115)
34 cd05468 pVHL von Hippel-Landau 21.6 1.7E+02 0.0037 23.7 4.4 34 19-52 8-46 (141)
35 PRK15195 fimbrial chaperone pr 21.5 2.1E+02 0.0045 25.1 5.2 36 19-54 42-92 (229)
36 cd07557 trimeric_dUTPase Trime 21.1 1.2E+02 0.0026 21.8 3.2 28 41-69 13-46 (92)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=2.8e-78 Score=523.85 Aligned_cols=197 Identities=48% Similarity=1.015 Sum_probs=186.2
Q ss_pred EEEEEeCCCCceeceeeC--------CCceeecCCCcEEEEcCCCCceeeeeeecccccCCCCCccccCCCCCCceeecC
Q 043196 21 KFNITNNCPNTVWAAAVP--------GGGRKLDNGQTWTITAEPGTTRARIWARTNCQFDASGKGKCETGDCNGLLECQG 92 (227)
Q Consensus 21 t~tv~N~C~~tVw~g~~p--------~~g~~L~~G~s~s~~~p~~w~sGriw~RtgC~~~~~g~~~C~TGdCgg~~~C~~ 92 (227)
+|||+|||+||||||++| .+||+|+||++++|.+|++| +|||||||||++|+.|+++|+||||+|.++|++
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~W-sGriWaRTgC~~~~~g~~~C~TGDCgg~l~C~g 79 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGW-SGRFWGRTGCSFDSSGKGSCATGDCGGGLECNG 79 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCc-ceeeeeccCCCCCCCCccccccCCCCCeeecCC
Confidence 599999999999999975 37999999999999999999 799999999999999999999999999999997
Q ss_pred C-CCCCcceeeeeeccCCCCcceeccccCCcCCceeeeeCCC--CccCCccCcccccCCCCCCCcCCC------CccCCc
Q 043196 93 Y-GTAPSTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSLSP--SCNRVIKCTANILGECPNELKVPG------GCNGPC 163 (227)
Q Consensus 93 ~-g~~paTlaEftl~~~~~~d~YDvSlVdGfNlP~~i~P~~g--~C~~~~~C~~dl~~~CP~~l~~~~------gC~S~C 163 (227)
. |.||+|||||||++.+++|||||||||||||||+|.|+++ .| +..+|.+|||..||.||++++ ||+|||
T Consensus 80 ~~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C-~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC 158 (219)
T cd09218 80 AGGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGGC-RTAGCVADLNAVCPAELQVKNSGGRVVACKSAC 158 (219)
T ss_pred CCCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCCC-CCCcccCcccccCCHHHeeccCCCcEeeecCHH
Confidence 5 4799999999998877899999999999999999999763 69 999999999999999999862 799999
Q ss_pred cccCCCCcCCCCC-----CCCCchhhHHHhhhCCCcccCCCCCCCCeeecCCCCceEEEee
Q 043196 164 HVFKTDKYCCNSG-----NCGPTNFSRFFKERCPDVYSYPKDDATSVFTCPSGTDYKVVFC 219 (227)
Q Consensus 164 ~~~~~~~~CC~g~-----~C~pt~ys~~fK~~CP~AYsya~DD~ts~~tC~~~~~y~VtFC 219 (227)
.+|++|||||+|+ +|+|+.||++||++||+||+|+|||++++|+|+++++|+|+||
T Consensus 159 ~~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 159 LAFNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred HhhCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 9999999999986 7999999999999999999999999999999998899999998
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=1.6e-77 Score=519.08 Aligned_cols=198 Identities=59% Similarity=1.251 Sum_probs=187.3
Q ss_pred EEEEeCCCCceeceeeC-------CCceeecCCCcEEEEcCCCCceeeeeeecccccCCCCCccccCCCCCCceeecCCC
Q 043196 22 FNITNNCPNTVWAAAVP-------GGGRKLDNGQTWTITAEPGTTRARIWARTNCQFDASGKGKCETGDCNGLLECQGYG 94 (227)
Q Consensus 22 ~tv~N~C~~tVw~g~~p-------~~g~~L~~G~s~s~~~p~~w~sGriw~RtgC~~~~~g~~~C~TGdCgg~~~C~~~g 94 (227)
|||+|||+||||||++| ++||+|+||+++++.+|++|++|||||||||+++++|+++|+||||+|.++|++.+
T Consensus 1 fti~N~C~~tVWp~~~~~g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCgG~l~C~g~g 80 (218)
T smart00205 1 FEFVNNCPYTVWAAALPSGKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCGGVLQCNGWG 80 (218)
T ss_pred CEEEcCCCCceeceecCCCCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCCCeeecCCCC
Confidence 79999999999999975 37999999999999999999779999999999999999999999999999999854
Q ss_pred -CCCcceeeeeeccCCCCcceeccccCCcCCceeeeeCC--CCccCCccCcccccCCCCCCCcCCC-----CccCCcccc
Q 043196 95 -TAPSTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSLS--PSCNRVIKCTANILGECPNELKVPG-----GCNGPCHVF 166 (227)
Q Consensus 95 -~~paTlaEftl~~~~~~d~YDvSlVdGfNlP~~i~P~~--g~C~~~~~C~~dl~~~CP~~l~~~~-----gC~S~C~~~ 166 (227)
.||+|||||||++.+++|||||||||||||||+|.|++ +.| +..+|.+|||..||.+|++++ ||+|+|.+|
T Consensus 81 g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C-~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~~f 159 (218)
T smart00205 81 GRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGDC-KGAGCTADLNAQCPAELQVPGGGSVVACNSACTVF 159 (218)
T ss_pred CCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCCc-CCCcCCCcccccCCHHHccccCCcccccccHhhcc
Confidence 89999999999887789999999999999999999974 359 999999999999999999962 699999999
Q ss_pred CCCCcCCCCC-----CCCCchhhHHHhhhCCCcccCCCCCCCCeeecCCCCceEEEeeC
Q 043196 167 KTDKYCCNSG-----NCGPTNFSRFFKERCPDVYSYPKDDATSVFTCPSGTDYKVVFCP 220 (227)
Q Consensus 167 ~~~~~CC~g~-----~C~pt~ys~~fK~~CP~AYsya~DD~ts~~tC~~~~~y~VtFCP 220 (227)
++|||||+|+ +|+|+.||++||++||+||+|++||++++|+|+++++|+|+|||
T Consensus 160 ~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 160 GTDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred CCCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 9999999997 79999999999999999999999999999999998999999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=3.2e-77 Score=519.07 Aligned_cols=196 Identities=34% Similarity=0.761 Sum_probs=182.3
Q ss_pred EEEEeCCCCceeceeeC-----------CCceeecCCCcEEEEcCCCCceeeeeeecccccC-CCCCccccCCCCCCcee
Q 043196 22 FNITNNCPNTVWAAAVP-----------GGGRKLDNGQTWTITAEPGTTRARIWARTNCQFD-ASGKGKCETGDCNGLLE 89 (227)
Q Consensus 22 ~tv~N~C~~tVw~g~~p-----------~~g~~L~~G~s~s~~~p~~w~sGriw~RtgC~~~-~~g~~~C~TGdCgg~~~ 89 (227)
|||+|||+||||||++| .+||+|+||++++|.+|++|++|||||||||++| ..|+++|+||||||.++
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l~ 80 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCGGGLT 80 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCCceee
Confidence 79999999999999964 3799999999999999999956999999999999 46899999999999999
Q ss_pred ecCCCCCCcceeeeeeccCCCCcceeccccCCcCCceeeeeCCCCccCCccCcccccCCCCCCCcCC-------CCccCC
Q 043196 90 CQGYGTAPSTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSLSPSCNRVIKCTANILGECPNELKVP-------GGCNGP 162 (227)
Q Consensus 90 C~~~g~~paTlaEftl~~~~~~d~YDvSlVdGfNlP~~i~P~~g~C~~~~~C~~dl~~~CP~~l~~~-------~gC~S~ 162 (227)
|++.+.||+|||||+|++. ++|||||||||||||||+|.|.. .| +..+|.+|||..||.||+++ .||+|+
T Consensus 81 C~~~g~pP~TlaEftL~~~-~~D~YdVSlVDGfNlP~~i~P~~-~C-~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~Sa 157 (229)
T cd09219 81 CENSDQPPASLAEFTLIGG-KEDNYDISLVDGFNIPLNITNNI-TC-PQPQCQVDLNVLCPALLRGPLDQKGVNLGCISP 157 (229)
T ss_pred cCCCCCCCcceeeEEecCC-CCceeEEEEecccccceEeccCC-CC-CCCcccCCCcccCCHHHccccCCCCccceecCH
Confidence 9987899999999999876 78999999999999999999954 79 99999999999999999986 279999
Q ss_pred ccc-cCC--CCcCCCCC-----CCCC--chhhHHHhhhCCCcccCCCCCCC--CeeecCC--CCceEEEeeC
Q 043196 163 CHV-FKT--DKYCCNSG-----NCGP--TNFSRFFKERCPDVYSYPKDDAT--SVFTCPS--GTDYKVVFCP 220 (227)
Q Consensus 163 C~~-~~~--~~~CC~g~-----~C~p--t~ys~~fK~~CP~AYsya~DD~t--s~~tC~~--~~~y~VtFCP 220 (227)
|.+ |++ |||||+|+ +|+| ++||++||++||+||||||||++ ++|+|++ +++|+|+|||
T Consensus 158 C~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 158 CNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred hhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 999 655 99999987 7999 88999999999999999999999 6799998 7899999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=1.1e-73 Score=494.40 Aligned_cols=193 Identities=54% Similarity=1.142 Sum_probs=160.0
Q ss_pred eCCCCceeceeeCC--------CceeecCCCcEEEEcCCCCceeeeeeecccccCCCCCccccCCCCCCceeecC-CCCC
Q 043196 26 NNCPNTVWAAAVPG--------GGRKLDNGQTWTITAEPGTTRARIWARTNCQFDASGKGKCETGDCNGLLECQG-YGTA 96 (227)
Q Consensus 26 N~C~~tVw~g~~p~--------~g~~L~~G~s~s~~~p~~w~sGriw~RtgC~~~~~g~~~C~TGdCgg~~~C~~-~g~~ 96 (227)
|||+||||||+++. +|++|+||+++++.+|++| +|||||||||++++.|+++|+||||+|+++|.+ .+.+
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~W-sGriW~RTgC~~~~~g~~~C~TGdCgg~~~C~~~~~~~ 79 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGW-SGRIWARTGCSFDGGGRGSCATGDCGGRLECNGAGGSP 79 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTE-SEEEEEEEEEEEETTSBEEEEES-STTBSSSSS----S
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccc-cceeeecCCCcCCCCCCcccccCCCCcccccccccCcc
Confidence 99999999999862 6899999999999999999 899999999999999999999999999999998 4589
Q ss_pred CcceeeeeeccCCCCcceeccccCCcCCceeeeeC-CCCccCCccCcccccCCCCCCCcCC-----CCccCCccccCCCC
Q 043196 97 PSTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSL-SPSCNRVIKCTANILGECPNELKVP-----GGCNGPCHVFKTDK 170 (227)
Q Consensus 97 paTlaEftl~~~~~~d~YDvSlVdGfNlP~~i~P~-~g~C~~~~~C~~dl~~~CP~~l~~~-----~gC~S~C~~~~~~~ 170 (227)
|+|||||+|++.+++|||||||||||||||+|+|+ +..| +..+|.+||+..||.||+++ .+|+|+|.+|++++
T Consensus 80 P~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~~~~C-~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~~ 158 (213)
T PF00314_consen 80 PATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSGGSNC-RSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTDE 158 (213)
T ss_dssp S--EEEEEEEETTTEEEEEEESTT-BSS-EEEEESSSSSS-SSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SHH
T ss_pred cceeEEEEeccCCCcceEEEEeeeeecCChhhccCCCCcc-ccccCccccccccchhheeeccCceeeecccceeccCCc
Confidence 99999999987788999999999999999999999 4679 99999999999999999984 37999999999999
Q ss_pred cCCCCC-----CCCCchhhHHHhhhCCCcccCCCCCCCCeeecCCCCceEEEeeC
Q 043196 171 YCCNSG-----NCGPTNFSRFFKERCPDVYSYPKDDATSVFTCPSGTDYKVVFCP 220 (227)
Q Consensus 171 ~CC~g~-----~C~pt~ys~~fK~~CP~AYsya~DD~ts~~tC~~~~~y~VtFCP 220 (227)
|||+|+ +|++++|+++||++||+||+|||||++++|+|+++++|+|||||
T Consensus 159 ~CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 159 YCCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HHTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred cccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 999986 89999999999999999999999999999999998999999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=2.7e-59 Score=387.15 Aligned_cols=149 Identities=50% Similarity=1.002 Sum_probs=138.2
Q ss_pred EEEEeCCCCceeceeeC-------CCceeecCCCcEEEEcCCCCceeeeeeecccccCC-CCCccccCCCCCCceeecCC
Q 043196 22 FNITNNCPNTVWAAAVP-------GGGRKLDNGQTWTITAEPGTTRARIWARTNCQFDA-SGKGKCETGDCNGLLECQGY 93 (227)
Q Consensus 22 ~tv~N~C~~tVw~g~~p-------~~g~~L~~G~s~s~~~p~~w~sGriw~RtgC~~~~-~g~~~C~TGdCgg~~~C~~~ 93 (227)
|||+|||+||||||++| .+||+|+||+++++.+|++| +|||||||+|++++ .|+++|+||||+|+++|++.
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~~~~gGf~L~~g~s~~~~~p~~w-sGriWgRTgC~~~~~~g~~~C~TGdCgg~l~C~g~ 79 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKGPYTGGFELNPGETKSFDVSAGW-QGRIWARTNCSFNANSGGNACLTGDCNGGLNCQGT 79 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCCCCCCCEecCCCCeeEEecCCCC-eEeeecccccccCCCCCCCCcccCCCCceeecCCC
Confidence 79999999999999975 47999999999999999998 79999999999998 79999999999999999997
Q ss_pred CCCCcceeeeeeccCCCCcceeccccCCcCCceeeeeCCCCccCCccCcccccCCCCCCCcCCCCccCCccccCCCCcCC
Q 043196 94 GTAPSTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSLSPSCNRVIKCTANILGECPNELKVPGGCNGPCHVFKTDKYCC 173 (227)
Q Consensus 94 g~~paTlaEftl~~~~~~d~YDvSlVdGfNlP~~i~P~~g~C~~~~~C~~dl~~~CP~~l~~~~gC~S~C~~~~~~~~CC 173 (227)
|.||+|||||||++.+++|||||||||||||||+|.|+++.| +..+|.
T Consensus 80 g~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~~~C-~~~~C~------------------------------- 127 (157)
T cd09215 80 GGPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQPGEC-PTPICA------------------------------- 127 (157)
T ss_pred CCCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCCCCC-CCCccc-------------------------------
Confidence 789999999999877788999999999999999999976567 666664
Q ss_pred CCCCCCCchhhHHHhhhCCCcccCCCCCCCCeeecCCCCceEEEee
Q 043196 174 NSGNCGPTNFSRFFKERCPDVYSYPKDDATSVFTCPSGTDYKVVFC 219 (227)
Q Consensus 174 ~g~~C~pt~ys~~fK~~CP~AYsya~DD~ts~~tC~~~~~y~VtFC 219 (227)
+||+||+|||||++++|+|+++++|+|+||
T Consensus 128 ----------------~Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 128 ----------------ACPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred ----------------cCccccccCCCCCccceECCCCCCEEEEeC
Confidence 199999999999999999999899999998
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=8.9e-55 Score=358.50 Aligned_cols=149 Identities=61% Similarity=1.256 Sum_probs=137.7
Q ss_pred EEEEeCCCCceeceeeC-CCceeecCCCcEEEEcCCC-CceeeeeeecccccCCCCCccccCCCCCCceeecCCCCCCcc
Q 043196 22 FNITNNCPNTVWAAAVP-GGGRKLDNGQTWTITAEPG-TTRARIWARTNCQFDASGKGKCETGDCNGLLECQGYGTAPST 99 (227)
Q Consensus 22 ~tv~N~C~~tVw~g~~p-~~g~~L~~G~s~s~~~p~~-w~sGriw~RtgC~~~~~g~~~C~TGdCgg~~~C~~~g~~paT 99 (227)
|+|+|||+||||||++| ++||+|+||+++++.+|++ | +|||||||+|+++++|+++|+||||||+++|.+.+.||+|
T Consensus 1 ~~~~N~C~~tvWp~~~~~~gG~~L~~g~~~~~~~p~~~w-~griW~RTgC~~~~~g~~~C~TGdCgg~l~C~~~g~pp~T 79 (151)
T cd09217 1 FTITNNCGYTVWPAATPVGGGRQLNPGQSWTIDVPAGTA-GGRIWGRTGCSFDASGRGSCQTGDCGGVLSCTGSGKPPAT 79 (151)
T ss_pred CEEEeCCCCcccceEecCCCCEeCCCCCeEEEEcCCCCc-eEEEeeecCCCcCCCCCCcccccCCCCeeecCCCCCCCce
Confidence 78999999999999998 6899999999999999998 6 8999999999999999999999999999999987799999
Q ss_pred eeeeeeccCCCCcceeccccCCcCCceeeeeCCCCccCCccCcccccCCCCCCCcCCCCccCCccccCCCCcCCCCCCCC
Q 043196 100 LAEYALKQFNDMDFIDMSNIDGFNVPMEFSSLSPSCNRVIKCTANILGECPNELKVPGGCNGPCHVFKTDKYCCNSGNCG 179 (227)
Q Consensus 100 laEftl~~~~~~d~YDvSlVdGfNlP~~i~P~~g~C~~~~~C~~dl~~~CP~~l~~~~gC~S~C~~~~~~~~CC~g~~C~ 179 (227)
|+||+|+. +++||||||+||||||||+|.|++++| +.+.|..
T Consensus 80 l~E~tl~~-~~~d~YdISlVdG~NlP~~i~P~~~~C-~~~~C~~------------------------------------ 121 (151)
T cd09217 80 LAEYTLNQ-SGQDFYDISLVDGFNVPMDFSPTGGGC-HAIPCAA------------------------------------ 121 (151)
T ss_pred eEEEEecC-CCCccEEEEeecccccceEEecCCCCC-CCCcCCC------------------------------------
Confidence 99999986 578999999999999999999986568 6666653
Q ss_pred CchhhHHHhhhCCCcccCCCCCCCCeeecCCCCceEEEeeC
Q 043196 180 PTNFSRFFKERCPDVYSYPKDDATSVFTCPSGTDYKVVFCP 220 (227)
Q Consensus 180 pt~ys~~fK~~CP~AYsya~DD~ts~~tC~~~~~y~VtFCP 220 (227)
+ ||+||+|++|| .++|+|+.+++|+|+|||
T Consensus 122 ---------d-C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 ---------N-CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred ---------C-CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 1 89999999995 699999999999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=2.7e-49 Score=326.49 Aligned_cols=144 Identities=41% Similarity=0.670 Sum_probs=127.2
Q ss_pred EEEEeCCCCceeceeeCC--------CceeecCCCcEEEEcCCCCceeeeeeecccccCCCCCccccCCCCCCceeecC-
Q 043196 22 FNITNNCPNTVWAAAVPG--------GGRKLDNGQTWTITAEPGTTRARIWARTNCQFDASGKGKCETGDCNGLLECQG- 92 (227)
Q Consensus 22 ~tv~N~C~~tVw~g~~p~--------~g~~L~~G~s~s~~~p~~w~sGriw~RtgC~~~~~g~~~C~TGdCgg~~~C~~- 92 (227)
|||+|||+|||||++++. +|++|+||+++++++|++| +||||+||+|+++..|++.|+||||++ +.|.+
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~w-sGRIW~RtgC~~~~~g~g~C~TGdcgg-~~c~g~ 78 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGF-SGRIWFRTGCSMDFSGTTGCLTQDPGV-VNPTDP 78 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCc-eEEEEEecCCcccCCCCccccccCCCC-cccCCC
Confidence 689999999999999752 7999999999999999999 799999999999998999999999998 67776
Q ss_pred CCCCCcceeeeeeccCCCCcceeccccCCcCCceeeeeCCCCccCCccCcccccCCCCCCCcCCCCccCCccccCCCCcC
Q 043196 93 YGTAPSTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSLSPSCNRVIKCTANILGECPNELKVPGGCNGPCHVFKTDKYC 172 (227)
Q Consensus 93 ~g~~paTlaEftl~~~~~~d~YDvSlVdGfNlP~~i~P~~g~C~~~~~C~~dl~~~CP~~l~~~~gC~S~C~~~~~~~~C 172 (227)
.+.||+||+||||++.+++||||||+||||||||+|+|..+. ..
T Consensus 79 ~g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~----g~-------------------------------- 122 (153)
T cd08961 79 NRDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGD----GT-------------------------------- 122 (153)
T ss_pred CCCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCC----CC--------------------------------
Confidence 568999999999987668899999999999999999996421 11
Q ss_pred CCCCCCCCchhhHHHhhhCCCcccCCCCCCCCeeecCCCCceEEEe
Q 043196 173 CNSGNCGPTNFSRFFKERCPDVYSYPKDDATSVFTCPSGTDYKVVF 218 (227)
Q Consensus 173 C~g~~C~pt~ys~~fK~~CP~AYsya~DD~ts~~tC~~~~~y~VtF 218 (227)
|++.. |||+|||||+.++|+|+++.+|.|+|
T Consensus 123 -----C~~~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 123 -----CLSTG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred -----ccccc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 22111 89999999988999999999999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=98.71 E-value=4.5e-07 Score=75.32 Aligned_cols=75 Identities=27% Similarity=0.456 Sum_probs=56.5
Q ss_pred CCCcceeeeeeccCCCCcceeccccCCcCCc---eeeeeCCCCccCCccCcccccCCCCCCCcCCCCccCCccccCCCCc
Q 043196 95 TAPSTLAEYALKQFNDMDFIDMSNIDGFNVP---MEFSSLSPSCNRVIKCTANILGECPNELKVPGGCNGPCHVFKTDKY 171 (227)
Q Consensus 95 ~~paTlaEftl~~~~~~d~YDvSlVdGfNlP---~~i~P~~g~C~~~~~C~~dl~~~CP~~l~~~~gC~S~C~~~~~~~~ 171 (227)
..|.|..||+|...+.+.|||+|.|.|..+- |.|.|.+..| +.+.|..
T Consensus 71 ~~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~~~C-p~I~Wp~---------------------------- 121 (155)
T PF04681_consen 71 GSPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSDPSC-PSIVWPN---------------------------- 121 (155)
T ss_pred CCceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCCCCC-CceECCC----------------------------
Confidence 3689999999986667899999999997553 7888877777 5554431
Q ss_pred CCCCCCCCCchhhHHHhhhCCCcccCCCCCCCCeeecCCCCceEEEeeCCCCC
Q 043196 172 CCNSGNCGPTNFSRFFKERCPDVYSYPKDDATSVFTCPSGTDYKVVFCPSLTR 224 (227)
Q Consensus 172 CC~g~~C~pt~ys~~fK~~CP~AYsya~DD~ts~~tC~~~~~y~VtFCP~~s~ 224 (227)
.-| + . ..+..|.+.+++++|+|+..+.
T Consensus 122 ------------------GvP-~------G-~~~~~C~~~~dl~LtLC~~~~~ 148 (155)
T PF04681_consen 122 ------------------GVP-A------G-SQVKNCGSSTDLVLTLCAPETK 148 (155)
T ss_pred ------------------CcC-C------C-cceeecCCCccEEEEeCCCCCc
Confidence 113 1 2 3467999999999999998764
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=91.05 E-value=0.31 Score=45.74 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=44.6
Q ss_pred CCCcEEEEcCCCCceeeeeeecccccCCCCCccccCCCCCCceeecCC---CCCC----cceeeeeeccCCCCcceeccc
Q 043196 46 NGQTWTITAEPGTTRARIWARTNCQFDASGKGKCETGDCNGLLECQGY---GTAP----STLAEYALKQFNDMDFIDMSN 118 (227)
Q Consensus 46 ~G~s~s~~~p~~w~sGriw~RtgC~~~~~g~~~C~TGdCgg~~~C~~~---g~~p----aTlaEftl~~~~~~d~YDvSl 118 (227)
+|++.++.+|. + +||||=..+=. =.|. ..+ +..+.-... .-|- -.-+|||++. ..-|-++|.
T Consensus 61 ~G~~~tvtiP~-~-sgRiyfS~g~~----L~F~-~~~--~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~--~gl~~N~T~ 129 (353)
T cd09216 61 PGDTTTVLPPR-M-SGRIYFSLGSK----LRFK-VVT--NPALVQPAGWNPSDPNFNILHDWVEFTFND--AGLFCNTTQ 129 (353)
T ss_pred CCCceEEcccc-c-CcEEEEEcCCe----eEEE-ecC--CCcccCCCCCCCCCCCccceEEEEEEEecC--CceEecccc
Confidence 57788899998 6 89999554310 0111 111 111111110 0111 2347999984 456899999
Q ss_pred cCCcCCceeeeeC
Q 043196 119 IDGFNVPMEFSSL 131 (227)
Q Consensus 119 VdGfNlP~~i~P~ 131 (227)
||-|.+||.|+-.
T Consensus 130 VD~~~~P~~l~l~ 142 (353)
T cd09216 130 VDMFSAPLAIGLR 142 (353)
T ss_pred eeeeccceEEEEe
Confidence 9999999988744
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=88.58 E-value=1.1 Score=42.30 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=45.8
Q ss_pred CCCcEEEEcCCCCceeeeeeecccccCCCCCccccCCCCCCceeecCC---CCCC----cceeeeeeccCCCCcceeccc
Q 043196 46 NGQTWTITAEPGTTRARIWARTNCQFDASGKGKCETGDCNGLLECQGY---GTAP----STLAEYALKQFNDMDFIDMSN 118 (227)
Q Consensus 46 ~G~s~s~~~p~~w~sGriw~RtgC~~~~~g~~~C~TGdCgg~~~C~~~---g~~p----aTlaEftl~~~~~~d~YDvSl 118 (227)
+|++.++++|.-+ +||||=..+=. -.|. ...+ |-.+.-... .-|- -..+|||++. ..-|-++|.
T Consensus 62 ~G~~~titiP~i~-sgRIyfS~g~~----L~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~--~~l~~N~S~ 132 (369)
T cd09220 62 PGSTTTVTIPILA-GGRIWFSVDDK----LTFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS--GQLYANISY 132 (369)
T ss_pred CCCceeEEccccc-ceEEEEEcCCe----EEEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC--CceEecccc
Confidence 5788899999977 89999544310 0111 1111 101110110 0111 2347999984 457899999
Q ss_pred cCCcCCceeeeeC
Q 043196 119 IDGFNVPMEFSSL 131 (227)
Q Consensus 119 VdGfNlP~~i~P~ 131 (227)
||-|.+||.|+-.
T Consensus 133 VD~~~~P~~l~l~ 145 (369)
T cd09220 133 VDFVGLPLGLSLT 145 (369)
T ss_pred eeeeccCeEEEEE
Confidence 9999999988643
No 11
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=68.05 E-value=3.4 Score=38.30 Aligned_cols=32 Identities=13% Similarity=0.398 Sum_probs=26.4
Q ss_pred ceeeeeeccCCCCcceeccccCCcCCceeeeeCC
Q 043196 99 TLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSLS 132 (227)
Q Consensus 99 TlaEftl~~~~~~d~YDvSlVdGfNlP~~i~P~~ 132 (227)
..+|||++. ..-|-++|.||-|.+||.|+-.+
T Consensus 124 df~EFT~n~--~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 124 DFIEFTYNA--TGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEEecC--CceEecccceeeeccCeEEEEEc
Confidence 347999983 67899999999999999887543
No 12
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=67.17 E-value=5.8 Score=36.78 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=20.1
Q ss_pred CchhhHHHhhhCC--CcccCCCCCC
Q 043196 180 PTNFSRFFKERCP--DVYSYPKDDA 202 (227)
Q Consensus 180 pt~ys~~fK~~CP--~AYsya~DD~ 202 (227)
.+.|++++++.-. .||.|||||-
T Consensus 275 tN~Yar~vH~~~idg~aYaF~YDDV 299 (319)
T cd09214 275 ANYYAQFWHAHSINGLAYGFPYDDV 299 (319)
T ss_pred chHHHHHHHHhccCCCeeecccccc
Confidence 3579999999997 7899999995
No 13
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=59.47 E-value=10 Score=35.93 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=20.7
Q ss_pred CCchhhHHHhhhCC--CcccCCCCCC
Q 043196 179 GPTNFSRFFKERCP--DVYSYPKDDA 202 (227)
Q Consensus 179 ~pt~ys~~fK~~CP--~AYsya~DD~ 202 (227)
..+.|++++++.-+ .+|.|||||-
T Consensus 319 ~tNhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 319 PTNHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred CchHHHHHHHHhccCCCeeccccccc
Confidence 34579999999988 7899999996
No 14
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=55.17 E-value=26 Score=27.32 Aligned_cols=51 Identities=14% Similarity=0.284 Sum_probs=36.9
Q ss_pred hccceEEEEEeCCCCceeceee------------------------C-CCceeecCCCcEEEEcCC-CCceeeeeeec
Q 043196 16 WAHATKFNITNNCPNTVWAAAV------------------------P-GGGRKLDNGQTWTITAEP-GTTRARIWART 67 (227)
Q Consensus 16 ~a~a~t~tv~N~C~~tVw~g~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~Rt 67 (227)
.-...+|.|+|.-.-+|++|.+ | ++....+||+++++++-+ += ..+|+|-.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG-~r~v~G~~ 94 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGG-NRRIYGFN 94 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEccC
Confidence 3456899999999999999952 2 345677899999997643 22 35666543
No 15
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=54.23 E-value=13 Score=34.95 Aligned_cols=23 Identities=17% Similarity=0.498 Sum_probs=19.8
Q ss_pred CchhhHHHhhhCC--CcccCCCCCC
Q 043196 180 PTNFSRFFKERCP--DVYSYPKDDA 202 (227)
Q Consensus 180 pt~ys~~fK~~CP--~AYsya~DD~ 202 (227)
.+.|++++++.=. .||.|||||-
T Consensus 309 tNhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 309 TNHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred chHHHHHHHHhccCCCeeecCcccc
Confidence 3579999999987 6899999995
No 16
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=53.49 E-value=29 Score=27.07 Aligned_cols=50 Identities=16% Similarity=0.387 Sum_probs=36.4
Q ss_pred ccceEEEEEeCCCCceeceee------------------------C-CCceeecCCCcEEEEcCC-CCceeeeeeec
Q 043196 17 AHATKFNITNNCPNTVWAAAV------------------------P-GGGRKLDNGQTWTITAEP-GTTRARIWART 67 (227)
Q Consensus 17 a~a~t~tv~N~C~~tVw~g~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~Rt 67 (227)
-...+|+|+|.-.-+|++|.+ | ++....+||+++++++-+ += ..+|+|-.
T Consensus 19 r~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G-~r~v~G~~ 94 (101)
T cd00407 19 REAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGG-KRRVYGFN 94 (101)
T ss_pred CCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccC-ceEEEccC
Confidence 357899999999999999952 2 355778899999997643 22 35666543
No 17
>PRK13202 ureB urease subunit beta; Reviewed
Probab=51.62 E-value=38 Score=26.59 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=35.7
Q ss_pred cceEEEEEeCCCCceeceee------------------------C-CCceeecCCCcEEEEcCC-CCceeeeeeec
Q 043196 18 HATKFNITNNCPNTVWAAAV------------------------P-GGGRKLDNGQTWTITAEP-GTTRARIWART 67 (227)
Q Consensus 18 ~a~t~tv~N~C~~tVw~g~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~Rt 67 (227)
...+|+|+|.-.-+|++|.+ | ++....+||+++++++-+ += ..+|+|-.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG-~r~v~G~~ 95 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPLGG-RREVPGLT 95 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEccC-CeEEEcCC
Confidence 35799999999999999952 2 345677899999987643 22 35666554
No 18
>PRK13203 ureB urease subunit beta; Reviewed
Probab=50.15 E-value=41 Score=26.30 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=36.4
Q ss_pred ccceEEEEEeCCCCceeceee------------------------C-CCceeecCCCcEEEEcCC-CCceeeeeeec
Q 043196 17 AHATKFNITNNCPNTVWAAAV------------------------P-GGGRKLDNGQTWTITAEP-GTTRARIWART 67 (227)
Q Consensus 17 a~a~t~tv~N~C~~tVw~g~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~Rt 67 (227)
-...+++|+|.-.-+|++|.+ | ++....+||+++++.+-+ += ..+|+|-.
T Consensus 19 r~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG-~r~v~G~n 94 (102)
T PRK13203 19 RETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPLAG-ARRVYGFR 94 (102)
T ss_pred CCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEccC
Confidence 356899999999999999952 2 345677899999987643 22 35666543
No 19
>PRK13201 ureB urease subunit beta; Reviewed
Probab=41.72 E-value=53 Score=26.92 Aligned_cols=51 Identities=12% Similarity=0.245 Sum_probs=37.1
Q ss_pred hccceEEEEEeCCCCceeceee------------------------C-CCceeecCCCcEEEEcCC-CCceeeeeeec
Q 043196 16 WAHATKFNITNNCPNTVWAAAV------------------------P-GGGRKLDNGQTWTITAEP-GTTRARIWART 67 (227)
Q Consensus 16 ~a~a~t~tv~N~C~~tVw~g~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~Rt 67 (227)
.-...+|.|+|.-.-+|++|.+ | ++....+||+++++.+-+ += ..+|+|-.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~igG-~r~V~Gfn 94 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVEYAG-KRKIFGFR 94 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEccC
Confidence 3456899999999999999952 2 345677899999997643 22 35676654
No 20
>PRK13204 ureB urease subunit beta; Reviewed
Probab=39.70 E-value=57 Score=27.38 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=37.8
Q ss_pred hccceEEEEEeCCCCceeceee------------------------C-CCceeecCCCcEEEEcCC-CCceeeeeeecc
Q 043196 16 WAHATKFNITNNCPNTVWAAAV------------------------P-GGGRKLDNGQTWTITAEP-GTTRARIWARTN 68 (227)
Q Consensus 16 ~a~a~t~tv~N~C~~tVw~g~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~Rtg 68 (227)
.-...+|+|+|.-.-+|++|.+ | ++....+||+++++.+-+ += ..+|+|-.+
T Consensus 41 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~gG-~r~V~Gfng 118 (159)
T PRK13204 41 GRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVPFAG-KRFIFGFNN 118 (159)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEEccC-ceEEEccCc
Confidence 3456899999999999999952 2 345778899999997643 22 357776543
No 21
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=38.94 E-value=32 Score=24.20 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=16.3
Q ss_pred eeecCCCcEEEEcCCCCc----eeeee
Q 043196 42 RKLDNGQTWTITAEPGTT----RARIW 64 (227)
Q Consensus 42 ~~L~~G~s~s~~~p~~w~----sGriw 64 (227)
|+|.||+..++....+.. +|++|
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vW 28 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVW 28 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEE
Confidence 678888888877766432 67777
No 22
>PHA03094 dUTPase; Provisional
Probab=36.59 E-value=38 Score=27.58 Aligned_cols=29 Identities=10% Similarity=0.025 Sum_probs=23.6
Q ss_pred ceeecCCCcEE------EEcCCCCceeeeeeecccc
Q 043196 41 GRKLDNGQTWT------ITAEPGTTRARIWARTNCQ 70 (227)
Q Consensus 41 g~~L~~G~s~s------~~~p~~w~sGriw~RtgC~ 70 (227)
.+.|.||+... +.+|.+| .|.|++|.+-.
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g~-~g~i~~RSsla 69 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKFC-YGRIAPRSGLS 69 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCCE-EEEEEcccccc
Confidence 46788888765 7899999 69999998754
No 23
>PRK13205 ureB urease subunit beta; Reviewed
Probab=36.54 E-value=69 Score=26.88 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=37.1
Q ss_pred hccceEEEEEeCCCCceeceee------------------------C-CCceeecCCCcEEEEcCC-CCceeeeeeecc
Q 043196 16 WAHATKFNITNNCPNTVWAAAV------------------------P-GGGRKLDNGQTWTITAEP-GTTRARIWARTN 68 (227)
Q Consensus 16 ~a~a~t~tv~N~C~~tVw~g~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~Rtg 68 (227)
.-...+|+|+|.-.-+|.+|.+ | ++....+||+++++.+-+ += ..+|+|-.+
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~igG-~R~V~Gfng 95 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVAIGG-DRIVAGFRD 95 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEccCc
Confidence 4457899999999999999952 2 345677899999987643 22 356665443
No 24
>PRK13198 ureB urease subunit beta; Reviewed
Probab=36.14 E-value=71 Score=26.81 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=37.2
Q ss_pred ccceEEEEEeCCCCceeceee------------------------C-CCceeecCCCcEEEEcCC-CCceeeeeeecc
Q 043196 17 AHATKFNITNNCPNTVWAAAV------------------------P-GGGRKLDNGQTWTITAEP-GTTRARIWARTN 68 (227)
Q Consensus 17 a~a~t~tv~N~C~~tVw~g~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~Rtg 68 (227)
-...+|.|+|.-.-+|++|.+ | ++....+||+++++.+-+ += ..+|+|-.+
T Consensus 47 r~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~gG-~r~V~Gfng 123 (158)
T PRK13198 47 KPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIPFGG-KQTLYGFNN 123 (158)
T ss_pred CcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEEccC-ceEEEccCc
Confidence 356899999999999999952 2 355677899999987643 22 357776543
No 25
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=35.70 E-value=61 Score=22.32 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=10.2
Q ss_pred cceEEEEEeCCCCc
Q 043196 18 HATKFNITNNCPNT 31 (227)
Q Consensus 18 ~a~t~tv~N~C~~t 31 (227)
++..++|+| |.++
T Consensus 32 tGeSv~I~g-C~~~ 44 (59)
T PF02495_consen 32 TGESVTISG-CEFT 44 (59)
T ss_pred eCcEEEEEC-CCCC
Confidence 578888988 9765
No 26
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=34.25 E-value=63 Score=25.18 Aligned_cols=49 Identities=18% Similarity=0.380 Sum_probs=29.8
Q ss_pred ccceEEEEEeCCCCceeceee------------------------C-CCceeecCCCcEEEEcCC-CCceeeeeee
Q 043196 17 AHATKFNITNNCPNTVWAAAV------------------------P-GGGRKLDNGQTWTITAEP-GTTRARIWAR 66 (227)
Q Consensus 17 a~a~t~tv~N~C~~tVw~g~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~R 66 (227)
-...+|+|+|.-.-+|++|.+ | ++....+||+++++.+-+ += ..+|+|-
T Consensus 18 r~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV~~gG-~r~v~G~ 92 (100)
T PF00699_consen 18 RERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELVPIGG-NRRVYGF 92 (100)
T ss_dssp SEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE-ST-T-EE-ST
T ss_pred CcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEEEccC-CeEEEcC
Confidence 346899999999999999952 2 345677899999887633 22 3456544
No 27
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=33.95 E-value=82 Score=27.60 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=36.2
Q ss_pred ccceEEEEEeCCCCceeceee------------------------C-CCceeecCCCcEEEEcCC-CCceeeeeeec
Q 043196 17 AHATKFNITNNCPNTVWAAAV------------------------P-GGGRKLDNGQTWTITAEP-GTTRARIWART 67 (227)
Q Consensus 17 a~a~t~tv~N~C~~tVw~g~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~Rt 67 (227)
-...+++|+|.-.-+|++|.+ | ++....+||+++++.+-+ += ..+|+|-.
T Consensus 128 r~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~gG-~r~v~G~~ 203 (208)
T PRK13192 128 RPAVTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLVPIGG-ARVVIGFN 203 (208)
T ss_pred CCEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEccC-ceEEEccc
Confidence 346899999999999999952 2 345677899999887643 22 35666543
No 28
>PRK13986 urease subunit alpha; Provisional
Probab=33.51 E-value=81 Score=27.96 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=38.1
Q ss_pred hccceEEEEEeCCCCceeceee------------------------C-CCceeecCCCcEEEEcCC-CCceeeeeeecc
Q 043196 16 WAHATKFNITNNCPNTVWAAAV------------------------P-GGGRKLDNGQTWTITAEP-GTTRARIWARTN 68 (227)
Q Consensus 16 ~a~a~t~tv~N~C~~tVw~g~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriw~Rtg 68 (227)
+-...+++|+|.-.-+|++|.+ | ++....+||+++++++-+ += ..+|+|-.|
T Consensus 123 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~gG-~r~v~G~ng 200 (225)
T PRK13986 123 GKKAVSVKVKNVGDRPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELIDIGG-NRRIFGFNA 200 (225)
T ss_pred CCcEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEccC-ceEEecCCc
Confidence 3456899999999999999952 2 356778899999997643 32 457776543
No 29
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=31.35 E-value=22 Score=28.80 Aligned_cols=18 Identities=50% Similarity=1.232 Sum_probs=13.8
Q ss_pred CCccccCCCCCCceeecC
Q 043196 75 GKGKCETGDCNGLLECQG 92 (227)
Q Consensus 75 g~~~C~TGdCgg~~~C~~ 92 (227)
|.+.|+-|||||.|.|+-
T Consensus 83 g~Gp~~PGdCGg~L~C~H 100 (127)
T PF00947_consen 83 GEGPAEPGDCGGILRCKH 100 (127)
T ss_dssp EE-SSSTT-TCSEEEETT
T ss_pred ecccCCCCCCCceeEeCC
Confidence 457899999999999984
No 30
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=26.61 E-value=21 Score=29.70 Aligned_cols=10 Identities=40% Similarity=0.637 Sum_probs=7.6
Q ss_pred ccCCcCCcee
Q 043196 118 NIDGFNVPME 127 (227)
Q Consensus 118 lVdGfNlP~~ 127 (227)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899997544
No 31
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=26.25 E-value=2.4e+02 Score=24.84 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=22.9
Q ss_pred ceEEEEEeCCCCc-----eecee-----------eCCCceeecCCCcEEEEc
Q 043196 19 ATKFNITNNCPNT-----VWAAA-----------VPGGGRKLDNGQTWTITA 54 (227)
Q Consensus 19 a~t~tv~N~C~~t-----Vw~g~-----------~p~~g~~L~~G~s~s~~~ 54 (227)
..+|+|+|+=... .|.-- +| .-|+|+||+..++.+
T Consensus 44 ~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtP-Plfrl~~~~~~~lRI 94 (228)
T PRK15188 44 QTSLPIINSSASNVFLIQSWVANADGSRSTDFIITP-PLFVIQPKKENILRI 94 (228)
T ss_pred eEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcC-CeEEECCCCceEEEE
Confidence 5689999998554 35521 11 357888888776653
No 32
>PF08434 CLCA_N: Calcium-activated chloride channel; InterPro: IPR013642 The CLCA family of calcium-activated chloride channels has been identified in many epithelial and endothelial cell types as well as in smooth muscle cells [] and has four or five putative transmembrane regions. Additionally to their role as chloride channels some CLCA proteins function as adhesion molecules and may also have roles as tumour suppressors []. The domain described here is found at the N terminus of CLCAs.
Probab=22.05 E-value=1.1e+02 Score=27.67 Aligned_cols=38 Identities=29% Similarity=0.234 Sum_probs=26.8
Q ss_pred ChhHHHH--HHHHHHhhhccceEEEEEeCCCCceeceeeC
Q 043196 1 MVSIYSF--FLVTLSVTWAHATKFNITNNCPNTVWAAAVP 38 (227)
Q Consensus 1 mv~~~~~--~~~~~~~~~a~a~t~tv~N~C~~tVw~g~~p 38 (227)
|+....+ +|+|.|+..+....|++.|+==..|-++|.|
T Consensus 1 ~~~~~~~~~~l~l~l~~~~~~s~v~L~nnGYe~vvIAI~p 40 (262)
T PF08434_consen 1 MGSFKSLVLLLVLHLLSGASTSLVKLNNNGYEDVVIAINP 40 (262)
T ss_pred CchhhhhHHHHHHHHhccccccEEEecCCCcccEEEEECC
Confidence 5555444 3344444556677899999998899999976
No 33
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.03 E-value=1.7e+02 Score=22.82 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=26.8
Q ss_pred ceEEEEEeCCCCceeceee--------CCCceeecCCCcEEE
Q 043196 19 ATKFNITNNCPNTVWAAAV--------PGGGRKLDNGQTWTI 52 (227)
Q Consensus 19 a~t~tv~N~C~~tVw~g~~--------p~~g~~L~~G~s~s~ 52 (227)
.+-|+|-|+-++.|++++. ..|-+.|+||+-..+
T Consensus 3 ~a~~~vCN~T~~~v~vAigy~~~~~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 3 HAGLRVCNRTSSPVGVAIGYRDGGGWVSEGWWRIDPGECATV 44 (115)
T ss_pred cCCcEEecCCCCeEEEEEEEEcCCCcEEeeeEEeCCCceEEe
Confidence 3568999999999999983 135688999986655
No 34
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=21.59 E-value=1.7e+02 Score=23.67 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=26.0
Q ss_pred ceEEEEEeCCCCceeceeeCCCc-----eeecCCCcEEE
Q 043196 19 ATKFNITNNCPNTVWAAAVPGGG-----RKLDNGQTWTI 52 (227)
Q Consensus 19 a~t~tv~N~C~~tVw~g~~p~~g-----~~L~~G~s~s~ 52 (227)
...++|+|+.+.+|-+-++--.| ..|+||+.+.+
T Consensus 8 ~~~v~F~N~t~~~v~~~Wid~~G~~~~Y~~l~pg~~~~~ 46 (141)
T cd05468 8 PSTVRFVNRTDRPVELYWIDYDGKPVSYGTLQPGETVRQ 46 (141)
T ss_pred eEEEEEEeCCCCeEEEEEECCCCCEEEeeeeCCCCEEee
Confidence 47899999999999777653112 47999998765
No 35
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=21.52 E-value=2.1e+02 Score=25.07 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=23.2
Q ss_pred ceEEEEEeCCCCc-----eeceee------C----CCceeecCCCcEEEEc
Q 043196 19 ATKFNITNNCPNT-----VWAAAV------P----GGGRKLDNGQTWTITA 54 (227)
Q Consensus 19 a~t~tv~N~C~~t-----Vw~g~~------p----~~g~~L~~G~s~s~~~ 54 (227)
..+|+|.|+=... .|.--. | ..-|+|+||+..++.+
T Consensus 42 ~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRI 92 (229)
T PRK15195 42 QTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRI 92 (229)
T ss_pred eEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEE
Confidence 5789999998654 254210 0 1358899998877653
No 36
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=21.06 E-value=1.2e+02 Score=21.83 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=20.8
Q ss_pred ceeecCCCcE------EEEcCCCCceeeeeeeccc
Q 043196 41 GRKLDNGQTW------TITAEPGTTRARIWARTNC 69 (227)
Q Consensus 41 g~~L~~G~s~------s~~~p~~w~sGriw~RtgC 69 (227)
.+.|.|++.. .+.+|.++ .|.|++|.+-
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~-~~~i~~RSs~ 46 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGY-VGLVFPRSSL 46 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCe-EEEEEcCchh
Confidence 4777777753 45678898 6999999764
Done!