BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043203
(613 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 62/168 (36%), Gaps = 51/168 (30%)
Query: 450 DIAKGLENVRIPLVDETCNEDLPK-FTYIPQNVIYQSAYVHISLARISDEDCCSNCSGD- 507
D+A+G ENV IP V+ E P+ + YI +N + + ++ + C +CS
Sbjct: 15 DVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHCTCVDDCSSSN 74
Query: 508 --CLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSN 565
C LSI C Y + G L +EF
Sbjct: 75 CLCGQLSIRCW----------YDKDGRLLQEF---------------------------- 96
Query: 566 NEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613
I I EC + C C C+NR+VQ GI +LQ+ T
Sbjct: 97 ---------NKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRT 135
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 62/168 (36%), Gaps = 51/168 (30%)
Query: 450 DIAKGLENVRIPLVDETCNEDLPK-FTYIPQNVIYQSAYVHISLARISDEDCCSNCSGD- 507
D+A+G ENV IP V+ E P+ + YI +N + + ++ + C +CS
Sbjct: 13 DVARGYENVPIPCVNGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHCTCVDDCSSSN 72
Query: 508 --CLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSN 565
C LSI C Y + G L +EF
Sbjct: 73 CLCGQLSIRCW----------YDKDGRLLQEF---------------------------- 94
Query: 566 NEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613
I I EC + C C C+NR+VQ GI +LQ+ T
Sbjct: 95 ---------NKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRT 133
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 62/168 (36%), Gaps = 51/168 (30%)
Query: 450 DIAKGLENVRIPLVDETCNEDLP-KFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGD- 507
DIA+G E + IP V+ +E P + Y+ QN + + ++ + C +CS
Sbjct: 33 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSN 92
Query: 508 --CLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSN 565
C LS+ C Y + G L EF +M + P
Sbjct: 93 CMCGQLSMRCW----------YDKDGRLLPEF-----NMAEPP----------------- 120
Query: 566 NEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613
I EC C C C+NR+VQ G+ +LQ+ T
Sbjct: 121 ---------------LIFECNHACSCWRNCRNRVVQNGLRARLQLYRT 153
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 62/168 (36%), Gaps = 51/168 (30%)
Query: 450 DIAKGLENVRIPLVDETCNEDLP-KFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGD- 507
DIA+G E + IP V+ +E P + Y+ QN + + ++ + C +CS
Sbjct: 34 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSN 93
Query: 508 --CLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSN 565
C LS+ C Y + G L EF +M + P
Sbjct: 94 CMCGQLSMRCW----------YDKDGRLLPEF-----NMAEPP----------------- 121
Query: 566 NEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613
I EC C C C+NR+VQ G+ +LQ+ T
Sbjct: 122 ---------------LIFECNHACSCWRNCRNRVVQNGLRARLQLYRT 154
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 62/168 (36%), Gaps = 51/168 (30%)
Query: 450 DIAKGLENVRIPLVDETCNEDLP-KFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGD- 507
DIA+G E + IP V+ +E P + Y+ QN + + ++ + C +CS
Sbjct: 32 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSN 91
Query: 508 --CLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSN 565
C LS+ C Y + G L EF +M + P
Sbjct: 92 CMCGQLSMRCW----------YDKDGRLLPEF-----NMAEPP----------------- 119
Query: 566 NEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613
I EC C C C+NR+VQ G+ +LQ+ T
Sbjct: 120 ---------------LIFECNHACSCWRNCRNRVVQNGLRARLQLYRT 152
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 62/168 (36%), Gaps = 51/168 (30%)
Query: 450 DIAKGLENVRIPLVDETCNEDLP-KFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGD- 507
DIA+G E + IP V+ +E P + Y+ QN + + ++ + C +CS
Sbjct: 8 DIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSN 67
Query: 508 --CLSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSN 565
C LS+ C Y + G L EF +M + P
Sbjct: 68 CMCGQLSMRCW----------YDKDGRLLPEF-----NMAEPP----------------- 95
Query: 566 NEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613
I EC C C C+NR+VQ G+ +LQ+ T
Sbjct: 96 ---------------LIFECNHACSCWRNCRNRVVQNGLRARLQLYRT 128
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 582 IKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613
I EC C CSM+C NR+VQ+G T L++ T
Sbjct: 113 IYECNSFCSCSMECPNRVVQRGRTLPLEIFKT 144
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 582 IKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613
I EC + C CS C NR+V++G T LQ+ T
Sbjct: 109 IYECHQGCACSKDCPNRVVERGRTVPLQIFRT 140
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 582 IKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613
+ EC C CS C+NR+VQ+G+ QV T
Sbjct: 102 VFECNVLCRCSDHCRNRVVQKGLQFHFQVFKT 133
>pdb|2PFD|A Chain A, Anisotropically Refined Structure Of Ftcd
pdb|2PFD|B Chain B, Anisotropically Refined Structure Of Ftcd
pdb|2PFD|C Chain C, Anisotropically Refined Structure Of Ftcd
pdb|2PFD|D Chain D, Anisotropically Refined Structure Of Ftcd
Length = 541
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 109 MPMPTSGRGSKKPSQLCLTDIRRGSSSQIPNALKEAEIPMPTSGQGSKKPS 159
+P+ G ++ PS+ L IR G +P LK+AE +P G S PS
Sbjct: 121 VPVYLYGEAAQXPSRQTLPAIRAGEYEALPEKLKQAEW-VPDFGPSSFVPS 170
>pdb|1TT9|A Chain A, Structure Of The Bifunctional And Golgi Associated
Formiminotransferase Cyclodeaminase Octamer
pdb|1TT9|B Chain B, Structure Of The Bifunctional And Golgi Associated
Formiminotransferase Cyclodeaminase Octamer
pdb|1TT9|C Chain C, Structure Of The Bifunctional And Golgi Associated
Formiminotransferase Cyclodeaminase Octamer
pdb|1TT9|D Chain D, Structure Of The Bifunctional And Golgi Associated
Formiminotransferase Cyclodeaminase Octamer
Length = 541
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 109 MPMPTSGRGSKKPSQLCLTDIRRGSSSQIPNALKEAEIPMPTSGQGSKKPS 159
+P+ G ++ PS+ L IR G +P LK+AE +P G S PS
Sbjct: 121 VPVYLYGEAAQXPSRQTLPAIRAGEYEALPEKLKQAEW-VPDFGPSSFVPS 170
>pdb|2H0B|A Chain A, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|B Chain B, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|C Chain C, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
pdb|2H0B|D Chain D, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN
1 ALPHA
Length = 184
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 54 FDFKENQGVEDENERVMGQDRLERPSKKLHLGKQKDHVSSAMANSSTTLAL 104
+D +N +E + L+R LH GK D+V+ A+ N + +L +
Sbjct: 18 YDLSQNPIQSSSDEITLSFKTLQRNGLXLHTGKSADYVNLALKNGAVSLVI 68
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 54 FDFKENQGVEDENERVMGQDRLERPSKKLHLGKQKDHVSSAMANSSTTLAL 104
+D +N +E + L+R LH GK D+V+ A+ N + +L +
Sbjct: 244 YDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVI 294
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 54 FDFKENQGVEDENERVMGQDRLERPSKKLHLGKQKDHVSSAMANSSTTLAL 104
+D +N +E + L+R LH GK D+V+ A+ N + +L +
Sbjct: 244 YDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVI 294
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 54 FDFKENQGVEDENERVMGQDRLERPSKKLHLGKQKDHVSSAMANSSTTLAL 104
+D +N +E + L+R LH GK D+V+ A+ N + +L +
Sbjct: 19 YDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVI 69
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 582 IKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613
I EC +C C C NRIVQ+G L + T
Sbjct: 116 IYECNSRCQCGPDCPNRIVQKGTQYSLCIFRT 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,711,119
Number of Sequences: 62578
Number of extensions: 609802
Number of successful extensions: 1055
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1037
Number of HSP's gapped (non-prelim): 22
length of query: 613
length of database: 14,973,337
effective HSP length: 105
effective length of query: 508
effective length of database: 8,402,647
effective search space: 4268544676
effective search space used: 4268544676
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)