Query 043203
Match_columns 613
No_of_seqs 211 out of 528
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 03:45:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hna_A Histone-lysine N-methyl 99.9 2.2E-26 7.6E-31 233.4 8.1 126 444-613 28-154 (287)
2 1ml9_A Histone H3 methyltransf 99.9 6.3E-23 2.2E-27 208.6 9.5 116 453-613 5-140 (302)
3 1mvh_A Cryptic LOCI regulator 99.9 7.9E-23 2.7E-27 208.3 8.9 120 448-613 18-144 (299)
4 3bo5_A Histone-lysine N-methyl 99.8 6.8E-21 2.3E-25 193.4 10.2 119 448-613 14-133 (290)
5 2r3a_A Histone-lysine N-methyl 99.8 4.7E-20 1.6E-24 188.3 8.0 128 431-613 18-147 (300)
6 3h6l_A Histone-lysine N-methyl 98.7 7.1E-09 2.4E-13 105.1 4.2 36 578-613 89-124 (278)
7 3ooi_A Histone-lysine N-methyl 98.5 6.1E-08 2.1E-12 95.4 4.3 35 579-613 64-99 (232)
8 3ope_A Probable histone-lysine 98.2 1.3E-06 4.6E-11 85.2 5.6 35 579-613 45-81 (222)
9 2pb7_A E3 ubiquitin-protein li 92.6 0.022 7.7E-07 57.1 0.1 27 412-439 159-185 (239)
10 3q0b_X Histone-lysine N-methyl 92.6 0.023 7.9E-07 54.2 0.1 26 412-438 135-160 (167)
11 3fde_A E3 ubiquitin-protein li 92.5 0.017 6E-07 57.0 -0.8 27 412-439 151-177 (212)
12 3oln_A E3 ubiquitin-protein li 89.2 0.077 2.6E-06 53.1 0.2 28 412-440 175-203 (231)
13 1q02_A Sequestosome 1; helical 76.1 1.1 3.7E-05 35.6 1.7 20 2-21 6-25 (52)
14 1ixs_A Holliday junction DNA h 69.0 5.3 0.00018 32.1 4.3 29 4-32 15-43 (62)
15 3t6p_A Baculoviral IAP repeat- 64.9 4.8 0.00016 41.9 4.2 51 1-60 118-168 (345)
16 2knz_A Ubiquilin-4; cytoplasm, 42.6 24 0.00083 27.2 3.8 27 2-28 7-34 (53)
17 3dmi_A Cytochrome C6; electron 37.5 31 0.0011 26.9 3.8 28 12-39 59-88 (88)
18 2g3q_A Protein YBL047C; endocy 36.9 27 0.00094 25.4 3.2 22 8-29 6-27 (43)
19 2abk_A Endonuclease III; DNA-r 36.9 28 0.00097 33.2 4.2 40 20-59 3-43 (211)
20 2jy5_A Ubiquilin-1; UBA, alter 35.3 22 0.00075 27.4 2.5 26 3-28 9-35 (52)
21 1z96_A DNA-damage, UBA-domain 32.1 38 0.0013 23.7 3.2 22 7-28 5-26 (40)
22 1ify_A HHR23A, UV excision rep 30.5 45 0.0015 25.2 3.5 25 4-28 6-30 (49)
23 1orn_A Endonuclease III; DNA r 30.0 38 0.0013 32.8 3.9 40 21-60 8-48 (226)
24 1wji_A Tudor domain containing 28.5 41 0.0014 26.9 3.1 42 7-60 10-51 (63)
25 1dv0_A DNA repair protein HHR2 27.5 24 0.00082 26.7 1.5 21 7-27 5-25 (47)
26 3iuz_A Putative glyoxalase sup 25.4 28 0.00095 36.6 2.0 35 17-51 187-221 (340)
27 1vg5_A RSGI RUH-014, rhomboid 25.0 50 0.0017 27.4 3.1 24 6-29 29-52 (73)
28 2l61_A EC protein I/II; metall 22.7 24 0.00083 24.4 0.6 12 585-596 4-15 (26)
29 3idw_A Actin cytoskeleton-regu 22.4 65 0.0022 27.1 3.3 26 11-36 42-67 (72)
30 3fhg_A Mjogg, N-glycosylase/DN 22.2 26 0.00091 33.5 1.1 40 19-58 7-46 (207)
31 2bwb_A Ubiquitin-like protein 21.7 61 0.0021 24.4 2.8 26 2-27 3-29 (46)
32 4ae4_A Ubiquitin-associated pr 21.6 57 0.0019 29.2 3.0 25 9-37 79-103 (118)
33 2yus_A SWI/SNF-related matrix- 20.9 30 0.001 28.8 1.0 24 19-43 22-45 (79)
34 2kna_A Baculoviral IAP repeat- 20.4 67 0.0023 28.0 3.2 42 14-60 35-76 (104)
No 1
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=99.93 E-value=2.2e-26 Score=233.40 Aligned_cols=126 Identities=32% Similarity=0.584 Sum_probs=105.0
Q ss_pred cceeeccccCCCCCCceEEEeCCCCCC-CCCceEeeccccCCCcccccccccccCCCCCcCCCCCCCCCCCCcccccccC
Q 043203 444 RSIRITDIAKGLENVRIPLVDETCNED-LPKFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGDCLSLSIPCACTRETG 522 (613)
Q Consensus 444 r~~~~~DISkG~E~vPIpvVNeVDde~-PP~F~YI~~ni~~q~a~vnisla~i~~~~gC~dC~g~Cls~s~~CaC~~~ng 522 (613)
..+...|||+|+|++||++||+||++. |+.|+||+++++.++..+. ..+.+..|| +|.++|.+. .|.|.+++
T Consensus 28 ~~~~~~Dis~G~E~~pi~~~N~vD~~~~p~~f~Y~~~~~~~~~~~~~---~~~~~~~gC-~C~~~C~~~--~C~C~~~~- 100 (287)
T 3hna_A 28 ERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNID---RNITHLQYC-VCIDDCSSS--NCMCGQLS- 100 (287)
T ss_dssp CEEEESCTTTTCSSSCCCEEESSSSCCCCCSSEECSSCEESSCCCCC---CBGGGCCCC-CCSSSSCST--TCHHHHHT-
T ss_pred CCEEhHhhCCCCCCCCEEEEeCCCCCCCCCCcEEccccccCCCcccc---ccCCCCCCC-cCcCCCCCC--CCcCcccC-
Confidence 444599999999999999999999987 6699999999877654332 134456799 999999974 79999988
Q ss_pred CccccCCCCcchHHHHHhhhhccCCCCccccccccCCCccccCCCCCCccccCCccccceeecCCCCCCCCCCCCceeee
Q 043203 523 GEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQ 602 (613)
Q Consensus 523 g~faYt~~GlL~~~fl~~ciS~~r~P~~~~~~yc~~cpler~kn~~~~epckGhL~r~~IyECn~~CgC~~~C~NRVVQr 602 (613)
++++|+.+|+|..+|.. ..+++|||||+.|+|+.+|.|||+|+
T Consensus 101 ~~~~y~~~g~l~~~~~~-------------------------------------~~~~~i~EC~~~C~C~~~C~Nr~~q~ 143 (287)
T 3hna_A 101 MRCWYDKDGRLLPEFNM-------------------------------------AEPPLIFECNHACSCWRNCRNRVVQN 143 (287)
T ss_dssp SSCCBCTTSCBCTTCCS-------------------------------------SSCCCEECCCTTSSSCTTCSSCSGGG
T ss_pred cccccCCCCcccccccc-------------------------------------cCCceEEecCCCCCCCCCCCCcccCc
Confidence 46899999999753210 02478999999999999999999999
Q ss_pred CCeeeEEEeeC
Q 043203 603 GITCKLQVRMT 613 (613)
Q Consensus 603 GIk~~LEVFkT 613 (613)
|++.+|+||+|
T Consensus 144 g~~~~l~v~~t 154 (287)
T 3hna_A 144 GLRARLQLYRT 154 (287)
T ss_dssp CCCSCEEEEEC
T ss_pred CCcccEEEEEc
Confidence 99999999997
No 2
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=99.88 E-value=6.3e-23 Score=208.63 Aligned_cols=116 Identities=32% Similarity=0.612 Sum_probs=92.7
Q ss_pred CCCCCCceEEEeCCCCCC-CCCceEeeccccCCCcccccccccccCCCCCcCCCC--CCCCCCCCcccccccC-------
Q 043203 453 KGLENVRIPLVDETCNED-LPKFTYIPQNVIYQSAYVHISLARISDEDCCSNCSG--DCLSLSIPCACTRETG------- 522 (613)
Q Consensus 453 kG~E~vPIpvVNeVDde~-PP~F~YI~~ni~~q~a~vnisla~i~~~~gC~dC~g--~Cls~s~~CaC~~~ng------- 522 (613)
.|.|++||++||+||++. ||.|+||+++++.+++.+. ...+..|| +|.+ +|.+. +|+|+++++
T Consensus 5 ~~~e~~pi~~~N~vd~~~~P~~F~Yi~~~~~~~~~~~~----~~~~~~gC-~C~~~~~C~~~--~C~C~~~~~~~~~~~~ 77 (302)
T 1ml9_A 5 ATHAQLPISIVNREDDAFLNPNFRFIDHSIIGKNVPVA----DQSFRVGC-SCASDEECMYS--TCQCLDEMAPDSDEEA 77 (302)
T ss_dssp ----CCCEEEECSSSSCCCCTTCEECSSCEECTTCCCC----CGGGCCCC-CCSSTTGGGST--TSGGGTTSCCC-----
T ss_pred ccCCCCCEEEEeCCCCCCCCCCCEEeeeeecCCCcccc----CcccCCCc-cCcCCCCcCCC--CCcChhhccccccccc
Confidence 478999999999999987 7799999999887765432 34556899 9998 89974 799999986
Q ss_pred ------CccccCCC----CcchHHHHHhhhhccCCCCccccccccCCCccccCCCCCCccccCCccccceeecCCCCCCC
Q 043203 523 ------GEFAYTQQ----GLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCS 592 (613)
Q Consensus 523 ------g~faYt~~----GlL~~~fl~~ciS~~r~P~~~~~~yc~~cpler~kn~~~~epckGhL~r~~IyECn~~CgC~ 592 (613)
+.|+|+.+ |+|+..|+. .+.+||||++.|+|+
T Consensus 78 ~~~~~~~~~~y~~~g~~~g~l~~~~~~--------------------------------------~~~~i~EC~~~C~C~ 119 (302)
T 1ml9_A 78 DPYTRKKRFAYYSQGAKKGLLRDRVLQ--------------------------------------SQEPIYECHQGCACS 119 (302)
T ss_dssp ------CCSSBBCSSTTBTSBCHHHHH--------------------------------------HCCCEECCCTTCSSC
T ss_pred cccccccccccccCCcccceeehhccc--------------------------------------CCCCeEecCCCCCCC
Confidence 35888654 466554443 147899999999999
Q ss_pred CCCCCceeeeCCeeeEEEeeC
Q 043203 593 MQCQNRIVQQGITCKLQVRMT 613 (613)
Q Consensus 593 ~~C~NRVVQrGIk~~LEVFkT 613 (613)
..|.|||+|+|++++|+||+|
T Consensus 120 ~~C~Nr~~q~g~~~~l~v~~t 140 (302)
T 1ml9_A 120 KDCPNRVVERGRTVPLQIFRT 140 (302)
T ss_dssp TTCTTCHHHHCCCSCEEEEEC
T ss_pred CCCCCcccccCCccceEEEEc
Confidence 999999999999999999997
No 3
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=99.87 E-value=7.9e-23 Score=208.34 Aligned_cols=120 Identities=32% Similarity=0.570 Sum_probs=100.5
Q ss_pred eccccCCCCCCceEEEeCCCCCCCC--CceEeeccccCCCcccccccccccCCCCCcCCCC--CCCCC-CCCccccccc-
Q 043203 448 ITDIAKGLENVRIPLVDETCNEDLP--KFTYIPQNVIYQSAYVHISLARISDEDCCSNCSG--DCLSL-SIPCACTRET- 521 (613)
Q Consensus 448 ~~DISkG~E~vPIpvVNeVDde~PP--~F~YI~~ni~~q~a~vnisla~i~~~~gC~dC~g--~Cls~-s~~CaC~~~n- 521 (613)
..|+++|.|++||++||+||++.|| .|+||+++++.+++.. ....+..|| +|.+ +|.+. ..+|.|.+++
T Consensus 18 ~~~~~~g~e~~pi~~~N~vd~~~~p~~~F~Yi~~~~~~~~~~~----~~~~~~~gC-~C~~~~~C~~~~~~~C~C~~~~~ 92 (299)
T 1mvh_A 18 FRKKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIP----PDPNFQSGC-NCSSLGGCDLNNPSRCECLDDLD 92 (299)
T ss_dssp HHHHHHTSSSSCEEEECSSCCCCCSCCCSEECSSCEECTTCCC----CCGGGCCCC-CCCCSSSSCTTCTTTCSSSTTCC
T ss_pred HHHHHcCcCCCCEEEEeCCCCCCCCCCCcEEccceecCCCcCc----CCCcCCCCC-cCcCCCCcCCCCCCCCccccccc
Confidence 7899999999999999999999866 5999999987765431 233456889 9995 89982 2479999875
Q ss_pred -CCccccCCCCcchHHHHHhhhhccCCCCccccccccCCCccccCCCCCCccccCCccccceeecCCCCCCCCCCCCcee
Q 043203 522 -GGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIV 600 (613)
Q Consensus 522 -gg~faYt~~GlL~~~fl~~ciS~~r~P~~~~~~yc~~cpler~kn~~~~epckGhL~r~~IyECn~~CgC~~~C~NRVV 600 (613)
++.|+|+.+|+|+.. .+.+|||||+.|+|+..|.|||+
T Consensus 93 ~~~~~~y~~~g~l~~~-----------------------------------------~~~~i~EC~~~C~C~~~C~Nr~~ 131 (299)
T 1mvh_A 93 EPTHFAYDAQGRVRAD-----------------------------------------TGAVIYECNSFCSCSMECPNRVV 131 (299)
T ss_dssp SSCCCSBCTTSSBCTT-----------------------------------------CCSEEECCCTTSCSCTTCTTCTG
T ss_pred cccccccCCCCceeec-----------------------------------------CCCCeEeCCCCCCCCCCcCCccc
Confidence 678999999998520 23689999999999999999999
Q ss_pred eeCCeeeEEEeeC
Q 043203 601 QQGITCKLQVRMT 613 (613)
Q Consensus 601 QrGIk~~LEVFkT 613 (613)
|+|++.+|+||+|
T Consensus 132 q~g~~~~l~v~~t 144 (299)
T 1mvh_A 132 QRGRTLPLEIFKT 144 (299)
T ss_dssp GGCCCSCEEEEEC
T ss_pred cccccccEEEEEc
Confidence 9999999999997
No 4
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=99.83 E-value=6.8e-21 Score=193.38 Aligned_cols=119 Identities=29% Similarity=0.472 Sum_probs=94.3
Q ss_pred eccccCCCCCCceEEEeCCCCCCCCCceEeeccccCCCcccccccccccCCCCCcCCCC-CCCCCCCCcccccccCCccc
Q 043203 448 ITDIAKGLENVRIPLVDETCNEDLPKFTYIPQNVIYQSAYVHISLARISDEDCCSNCSG-DCLSLSIPCACTRETGGEFA 526 (613)
Q Consensus 448 ~~DISkG~E~vPIpvVNeVDde~PP~F~YI~~ni~~q~a~vnisla~i~~~~gC~dC~g-~Cls~s~~CaC~~~ngg~fa 526 (613)
..|||+|+|++||++||+ +..|+.|+||+++++.+++.++.+ .+. ..|| +|.+ .|.+. .|.|.+.+ .+
T Consensus 14 ~~Dis~G~E~~pi~~~n~--~~~p~~f~Y~~~~~~~~~~~~~~~--~~~-~~gC-~C~~~~C~~~--~C~C~~~~---~~ 82 (290)
T 3bo5_A 14 QLDVACGQENLPVGAWPP--GAAPAPFQYTPDHVVGPGADIDPT--QIT-FPGC-ICVKTPCLPG--TCSCLRHG---EN 82 (290)
T ss_dssp CSCTTTTCSSSCCEEEST--TCCCCCCEECSSCEECTTCSSCTT--SCC-CCCC-CCCSSCCCTT--TCGGGTTS---CS
T ss_pred chhhhCCCCCCceeeECC--CCCCCCcEEeeceecCCCCcCCcc--ccc-CCCC-CCCCCCcCCC--CCcchhhc---Cc
Confidence 579999999999999998 556899999999998887766532 222 3689 9986 68765 79999874 47
Q ss_pred cCCCCcchHHHHHhhhhccCCCCccccccccCCCccccCCCCCCccccCCccccceeecCCCCCCCCCCCCceeeeCCee
Q 043203 527 YTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRKCGCSMQCQNRIVQQGITC 606 (613)
Q Consensus 527 Yt~~GlL~~~fl~~ciS~~r~P~~~~~~yc~~cpler~kn~~~~epckGhL~r~~IyECn~~CgC~~~C~NRVVQrGIk~ 606 (613)
|+.++.|...-. + ...+.+|||||..|+|+..|.|||+|+|++.
T Consensus 83 y~~~~~l~~~~~----------------------------~--------~~~~~~~~EC~~~C~C~~~C~Nr~~q~g~~~ 126 (290)
T 3bo5_A 83 YDDNSCLRDIGS----------------------------G--------GKYAEPVFECNVLCRCSDHCRNRVVQKGLQF 126 (290)
T ss_dssp BCTTSCBCC-----------------------------------------CCCCCEECCCTTCCSCTTCTTCCGGGCCCS
T ss_pred cCcccccccccc----------------------------c--------cccCCceEeCCCCCCCCCCCCCeEcccCCcc
Confidence 888877742000 0 0023679999999999999999999999999
Q ss_pred eEEEeeC
Q 043203 607 KLQVRMT 613 (613)
Q Consensus 607 ~LEVFkT 613 (613)
+|+||+|
T Consensus 127 ~l~V~~s 133 (290)
T 3bo5_A 127 HFQVFKT 133 (290)
T ss_dssp CEEEEEC
T ss_pred cEEEEEc
Confidence 9999997
No 5
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=99.80 E-value=4.7e-20 Score=188.27 Aligned_cols=128 Identities=24% Similarity=0.369 Sum_probs=98.8
Q ss_pred cccCCCcccccccccee-eccccCCCCCCceEEEeCCCCCCCC-CceEeeccccCCCcccccccccccCCCCCcCCCCCC
Q 043203 431 ATVQQQPVTCNEKRSIR-ITDIAKGLENVRIPLVDETCNEDLP-KFTYIPQNVIYQSAYVHISLARISDEDCCSNCSGDC 508 (613)
Q Consensus 431 ~r~p~q~l~~~~~r~~~-~~DISkG~E~vPIpvVNeVDde~PP-~F~YI~~ni~~q~a~vnisla~i~~~~gC~dC~g~C 508 (613)
+.-.+|..+...|+... ..+. +..||++||+||++.|| .|+||+++++.+++.+. . .+..|| +|.+ |
T Consensus 18 ~~~~~q~~~~~~w~~~~~~~~~----~~~~i~~~N~vd~~~~P~~f~yi~~~~~~~~~~~~---~--~~~~gC-~C~~-C 86 (300)
T 2r3a_A 18 VKKAKQRIALQRWQDELNRRKN----HKGMIFVENTVDLEGPPSDFYYINEYKPAPGISLV---N--EATFGC-SCTD-C 86 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC----SSSCEEEECSSSCCCCCSSCEECSSCEECTTCCCC--------CCCC-CCSS-T
T ss_pred HhhhhhHHHHHHHHHHhccccc----CCCCeEEEeCcCCccCCCCEEECcccccCCCCccC---C--CCCCCc-CCcC-C
Confidence 34445666666676655 3333 34599999999999866 89999999877665331 1 235789 9985 9
Q ss_pred CCCCCCcccccccCCccccCCCCcchHHHHHhhhhccCCCCccccccccCCCccccCCCCCCccccCCccccceeecCCC
Q 043203 509 LSLSIPCACTRETGGEFAYTQQGLLKEEFLSACMSMKKGPCEEHLVYCQDCPIERSNNEYCPEKCKGHIVRKFIKECWRK 588 (613)
Q Consensus 509 ls~s~~CaC~~~ngg~faYt~~GlL~~~fl~~ciS~~r~P~~~~~~yc~~cpler~kn~~~~epckGhL~r~~IyECn~~ 588 (613)
.+. .| |....++.|+|+.+|+|+.. ...+||||++.
T Consensus 87 ~~~--~c-c~~~~~~~~~Y~~~g~l~~~-----------------------------------------~~~~i~EC~~~ 122 (300)
T 2r3a_A 87 FFQ--KC-CPAEAGVLLAYNKNQQIKIP-----------------------------------------PGTPIYECNSR 122 (300)
T ss_dssp TTS--SC-HHHHTTSCCSBCTTSCBCSC-----------------------------------------TTCCEECCCTT
T ss_pred CCC--Cc-chhhccCccccccCCcEecc-----------------------------------------CCCcEEeCCCC
Confidence 874 57 88888889999999988530 13679999999
Q ss_pred CCCCCCCCCceeeeCCeeeEEEeeC
Q 043203 589 CGCSMQCQNRIVQQGITCKLQVRMT 613 (613)
Q Consensus 589 CgC~~~C~NRVVQrGIk~~LEVFkT 613 (613)
|+|+..|.|||+|+|++++|+||+|
T Consensus 123 C~C~~~C~Nr~~q~g~~~~l~vfrt 147 (300)
T 2r3a_A 123 CQCGPDCPNRIVQKGTQYSLCIFRT 147 (300)
T ss_dssp SSCCTTCTTCSGGGCCCSCEEEEEC
T ss_pred CCCCCcCCCccccccccccEEEEEe
Confidence 9999999999999999999999997
No 6
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=98.69 E-value=7.1e-09 Score=105.09 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=34.1
Q ss_pred cccceeecCCCCCCCCCCCCceeeeCCeeeEEEeeC
Q 043203 578 VRKFIKECWRKCGCSMQCQNRIVQQGITCKLQVRMT 613 (613)
Q Consensus 578 ~r~~IyECn~~CgC~~~C~NRVVQrGIk~~LEVFkT 613 (613)
-|..||||++.|+|+.+|.||++|+|.+.+|+||+|
T Consensus 89 nr~~~~EC~~~C~C~~~C~Nr~~q~g~~~~leV~~t 124 (278)
T 3h6l_A 89 NRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILT 124 (278)
T ss_dssp TGGGTBCCCTTCTTGGGCSSCTTTTTCCCCEEEEEC
T ss_pred CcceEeccCCCCCcCCCCCCccccCCCccCEEEEEc
Confidence 367899999999999999999999999999999987
No 7
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=98.49 E-value=6.1e-08 Score=95.45 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=33.2
Q ss_pred ccceeecCC-CCCCCCCCCCceeeeCCeeeEEEeeC
Q 043203 579 RKFIKECWR-KCGCSMQCQNRIVQQGITCKLQVRMT 613 (613)
Q Consensus 579 r~~IyECn~-~CgC~~~C~NRVVQrGIk~~LEVFkT 613 (613)
|..||||++ .|+|+..|.|||+|+|...+|+||+|
T Consensus 64 r~~~~EC~~~~C~c~~~C~Nr~~q~~~~~~lev~~t 99 (232)
T 3ooi_A 64 RMLLYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRT 99 (232)
T ss_dssp HHTTBCCCTTTCTTGGGCCCCHHHHTCCCCEEEEEC
T ss_pred cCceeEeCCCCCCCCCCcCCccccCCCCccEEEEEc
Confidence 578999998 79999999999999999999999997
No 8
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=98.18 E-value=1.3e-06 Score=85.18 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=31.7
Q ss_pred ccceeecCC-CCCCCCCCCCceeeeCCeee-EEEeeC
Q 043203 579 RKFIKECWR-KCGCSMQCQNRIVQQGITCK-LQVRMT 613 (613)
Q Consensus 579 r~~IyECn~-~CgC~~~C~NRVVQrGIk~~-LEVFkT 613 (613)
|..++||++ .|+|+..|.||++|+|...+ |+||+|
T Consensus 45 r~~~~EC~~~~C~C~~~C~Nr~~q~~~~~~~lev~~t 81 (222)
T 3ope_A 45 RMIFAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRA 81 (222)
T ss_dssp GGGTBCCCTTTCTTTTSCSSCTTTTTCCCSCCEEEEC
T ss_pred cCeEeEeCCCCCcCCCCCCCceEeCCCccccEEEEEc
Confidence 578999997 89999999999999998764 999987
No 9
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A {Homo sapiens} SCOP: b.122.1.12
Probab=92.57 E-value=0.022 Score=57.14 Aligned_cols=27 Identities=11% Similarity=0.016 Sum_probs=25.2
Q ss_pred chhhhcCCCCCccccCccccccCCCccc
Q 043203 412 RDLNKKSSNRSNCLNSSNLATVQQQPVT 439 (613)
Q Consensus 412 ~~w~e~g~~g~~v~k~~~L~r~p~q~l~ 439 (613)
++|.++|++|+.||||+ |+|+++||..
T Consensus 159 ~~w~e~gk~G~~V~kf~-L~R~~gQP~~ 185 (239)
T 2pb7_A 159 KYWPEKGKSGFLVWRYL-LRRDDDEPGP 185 (239)
T ss_dssp EEEEEECTTSSEEEEEE-EEECCSSCCT
T ss_pred EEEEeecCCCcEEEEEE-EEECCCCCCC
Confidence 68999999999999998 9999999954
No 10
>3q0b_X Histone-lysine N-methyltransferase, H3 lysine-9 S SUVH5; SRA, fully methylated CG, SUVH5, 5MC binding protein, fully methylated CG duplex DNA; HET: DNA 5CM; 2.20A {Arabidopsis thaliana} PDB: 3q0c_X* 3q0d_X* 3q0f_X*
Probab=92.57 E-value=0.023 Score=54.15 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=24.5
Q ss_pred chhhhcCCCCCccccCccccccCCCcc
Q 043203 412 RDLNKKSSNRSNCLNSSNLATVQQQPV 438 (613)
Q Consensus 412 ~~w~e~g~~g~~v~k~~~L~r~p~q~l 438 (613)
++|.++|++|+.||||+ |+|+|+||.
T Consensus 135 ~~w~e~g~~G~~v~kf~-L~R~~gQp~ 160 (167)
T 3q0b_X 135 EYWEETGSHGKLVFKFK-LRRIPGQPE 160 (167)
T ss_dssp EEEEEECTTSCEEEEEE-EEECTTSCC
T ss_pred eeEEeeCCCCcEEEEEE-EEEcCCCCC
Confidence 58999999999999999 999999993
No 11
>3fde_A E3 ubiquitin-protein ligase UHRF1; SRA domain, base flipping, DNA CPG methylation, cell cycle, developmental protein, DNA damage; HET: 5CM; 1.41A {Mus musculus} SCOP: b.122.1.12 PDB: 2zo0_B* 2zo2_B* 3f8i_A* 2zo1_B* 3f8j_B* 2zkd_A* 2zke_A* 2zkf_A* 2zkg_A 3dwh_A 3bi7_A 3clz_A*
Probab=92.54 E-value=0.017 Score=57.03 Aligned_cols=27 Identities=7% Similarity=0.016 Sum_probs=25.3
Q ss_pred chhhhcCCCCCccccCccccccCCCccc
Q 043203 412 RDLNKKSSNRSNCLNSSNLATVQQQPVT 439 (613)
Q Consensus 412 ~~w~e~g~~g~~v~k~~~L~r~p~q~l~ 439 (613)
++|.++|++|+.||||+ |+|+++||..
T Consensus 151 ~~W~e~g~~G~~V~kf~-L~R~~gqp~~ 177 (212)
T 3fde_A 151 KYWPERGKSGFLVWRYL-LRRDDTEPEP 177 (212)
T ss_dssp EEEEEECTTSSEEEEEE-EEECCSSCCT
T ss_pred EEEEccCCCCcEEEEEE-EEECCCCCCC
Confidence 68999999999999998 9999999964
No 12
>3oln_A E3 ubiquitin-protein ligase UHRF2; DNA-binding, metal-binding, nucleus, phosphorylation transcription, transcription regulation; 2.30A {Homo sapiens} SCOP: b.122.1.12
Probab=89.16 E-value=0.077 Score=53.07 Aligned_cols=28 Identities=14% Similarity=-0.001 Sum_probs=25.7
Q ss_pred chhhhcCCC-CCccccCccccccCCCcccc
Q 043203 412 RDLNKKSSN-RSNCLNSSNLATVQQQPVTC 440 (613)
Q Consensus 412 ~~w~e~g~~-g~~v~k~~~L~r~p~q~l~~ 440 (613)
++|.++|++ |+.||||+ |+|+++||...
T Consensus 175 ~~W~e~g~s~G~~V~Kf~-L~R~~gQP~~w 203 (231)
T 3oln_A 175 KYWPEISSSHGFLVWRYL-LRRDDVEPAPW 203 (231)
T ss_dssp EEEEEECTTTCCEEEEEE-EEECCSSCCTT
T ss_pred EEEeccCCcCCeEEEEEE-EEECCCCCCCc
Confidence 689999999 99999998 99999999643
No 13
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=76.08 E-value=1.1 Score=35.60 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=17.9
Q ss_pred ChHHHHHHHHHHHhcCCChh
Q 043203 2 DRERAVRAANAMKAIGIVDK 21 (613)
Q Consensus 2 ~~~r~~~A~~am~~lG~~~~ 21 (613)
.++|+..|+.+|..|||+..
T Consensus 6 ~D~rl~~al~qMl~MGF~ne 25 (52)
T 1q02_A 6 ADPRLIESLSQMLSMGFSDE 25 (52)
T ss_dssp SCHHHHHHHHHHHTTTCCCT
T ss_pred cChHHHHHHHHHHHcCCCcc
Confidence 46999999999999999954
No 14
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=69.03 E-value=5.3 Score=32.08 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHH
Q 043203 4 ERAVRAANAMKAIGIVDKQVQTVLVNLLE 32 (613)
Q Consensus 4 ~r~~~A~~am~~lG~~~~~v~~vlk~Ll~ 32 (613)
+-...|+.|+..|||+++++..+|+++.+
T Consensus 15 ~~~~ea~~AL~aLGY~~~ea~kav~~v~~ 43 (62)
T 1ixs_A 15 EAAEEAVMALAALGFKEAQARAVVLDLLA 43 (62)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 34467999999999999999999999865
No 15
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=64.95 E-value=4.8 Score=41.94 Aligned_cols=51 Identities=10% Similarity=0.182 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHhccCccccccchhHHHHHhhhhhcccc
Q 043203 1 MDRERAVRAANAMKAIGIVDKQVQTVLVNLLELFNWNWEYIEAEDYRALKDTYFDFKENQ 60 (613)
Q Consensus 1 ~~~~r~~~A~~am~~lG~~~~~v~~vlk~Ll~~y~~nW~~iEe~~Yr~l~dai~d~~e~~ 60 (613)
|.++.+..|+ .|||+.+.|+.++++.|+.-+.++.-++ .|++++|+.+++.
T Consensus 118 ~~~~~v~~~l----~mGf~~~~v~~~~~~~~~~~g~~~~~~~-----~lv~~~l~~~~~~ 168 (345)
T 3t6p_A 118 MNTPVVKSAL----EMGFNRDLVKQTVQSKILTTGENYKTVN-----DIVSALLNAEDEK 168 (345)
T ss_dssp GCSHHHHHHH----HTTCCHHHHHHHHHHHHHHHSSCCCSHH-----HHHHHHHHHHHHH
T ss_pred hcCHHHHHHH----HhcccHHHHHHHHHHHHHhcCCCcCCHH-----HHHHHHHhccccc
Confidence 3455566666 6999999999999999999998887765 5899999888754
No 16
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=42.64 E-value=24 Score=27.17 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHHHhcCC-ChhhHHHHHH
Q 043203 2 DRERAVRAANAMKAIGI-VDKQVQTVLV 28 (613)
Q Consensus 2 ~~~r~~~A~~am~~lG~-~~~~v~~vlk 28 (613)
+.++....++.+..||| ++..++..|+
T Consensus 7 pe~~~~~~l~~L~~MGF~~~~~~~~AL~ 34 (53)
T 2knz_A 7 PEVRFQQQLEQLNSMGFINREANLQALI 34 (53)
T ss_dssp THHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45778889999999999 7776665544
No 17
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=37.52 E-value=31 Score=26.88 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=24.1
Q ss_pred HHHhcC--CChhhHHHHHHHHHHHhccCcc
Q 043203 12 AMKAIG--IVDKQVQTVLVNLLELFNWNWE 39 (613)
Q Consensus 12 am~~lG--~~~~~v~~vlk~Ll~~y~~nW~ 39 (613)
.|-+++ +++.++..|+.=|..+.+++||
T Consensus 59 ~Mp~~~~~ls~~ei~~l~~yl~~~~~~~w~ 88 (88)
T 3dmi_A 59 AMPAFGGRLSDEEIANVAAYVLASAEAGWE 88 (88)
T ss_dssp TBCCCTTTSCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHHhccCCC
Confidence 477776 8999999999999999999996
No 18
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=36.94 E-value=27 Score=25.36 Aligned_cols=22 Identities=14% Similarity=0.382 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCChhhHHHHHHH
Q 043203 8 RAANAMKAIGIVDKQVQTVLVN 29 (613)
Q Consensus 8 ~A~~am~~lG~~~~~v~~vlk~ 29 (613)
.++..+..|||++.+++..|+.
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~ 27 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEK 27 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 5688999999999888776553
No 19
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=36.88 E-value=28 Score=33.16 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHHhccC-ccccccchhHHHHHhhhhhccc
Q 043203 20 DKQVQTVLVNLLELFNWN-WEYIEAEDYRALKDTYFDFKEN 59 (613)
Q Consensus 20 ~~~v~~vlk~Ll~~y~~n-W~~iEe~~Yr~l~dai~d~~e~ 59 (613)
++.+..+++.|++.|+.. |.+...+-|.+|+-+|+-.|-.
T Consensus 3 ~~~~~~i~~~L~~~~~~~~~~~~~~~pfe~lv~~Il~qqts 43 (211)
T 2abk_A 3 KAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQAT 43 (211)
T ss_dssp HHHHHHHHHHHHHHCSSCCCSSCCSSHHHHHHHHHHTTTSC
T ss_pred hhHHHHHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHhCCCC
Confidence 456788999999999874 6667789999999999965543
No 20
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=35.29 E-value=22 Score=27.35 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHhcCC-ChhhHHHHHH
Q 043203 3 RERAVRAANAMKAIGI-VDKQVQTVLV 28 (613)
Q Consensus 3 ~~r~~~A~~am~~lG~-~~~~v~~vlk 28 (613)
.++....++.+..||| ++..++..|+
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~ 35 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALI 35 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566788999999999 7776655544
No 21
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=32.05 E-value=38 Score=23.75 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCCChhhHHHHHH
Q 043203 7 VRAANAMKAIGIVDKQVQTVLV 28 (613)
Q Consensus 7 ~~A~~am~~lG~~~~~v~~vlk 28 (613)
+.++..+..|||++.+++..|+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~ 26 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALD 26 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 4578889999999999877654
No 22
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.54 E-value=45 Score=25.23 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHH
Q 043203 4 ERAVRAANAMKAIGIVDKQVQTVLV 28 (613)
Q Consensus 4 ~r~~~A~~am~~lG~~~~~v~~vlk 28 (613)
+.-+.++..+..|||++.+++..|+
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~ 30 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALR 30 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHH
Confidence 4456789999999999999988766
No 23
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=29.99 E-value=38 Score=32.81 Aligned_cols=40 Identities=13% Similarity=0.216 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHhccC-ccccccchhHHHHHhhhhhcccc
Q 043203 21 KQVQTVLVNLLELFNWN-WEYIEAEDYRALKDTYFDFKENQ 60 (613)
Q Consensus 21 ~~v~~vlk~Ll~~y~~n-W~~iEe~~Yr~l~dai~d~~e~~ 60 (613)
+.+..+++.|++.|++. |++.-.+-|.+|+-+|+-.|-.-
T Consensus 8 ~~~~~i~~~L~~~y~~~~~~l~~~~pfe~Lv~~IlsQqts~ 48 (226)
T 1orn_A 8 QQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTD 48 (226)
T ss_dssp HHHHHHHHHHHHHCTTCCCCSCCSSHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHhCCCcH
Confidence 57888999999999875 56667899999999999877553
No 24
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.54 E-value=41 Score=26.94 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHhccCccccccchhHHHHHhhhhhcccc
Q 043203 7 VRAANAMKAIGIVDKQVQTVLVNLLELFNWNWEYIEAEDYRALKDTYFDFKENQ 60 (613)
Q Consensus 7 ~~A~~am~~lG~~~~~v~~vlk~Ll~~y~~nW~~iEe~~Yr~l~dai~d~~e~~ 60 (613)
..++..+..|||++.+++..|+ ..+|| .-.-++-||+..+..
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~----~~~~n--------ve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALM----DNGNN--------LEAALNVLLTSNKQK 51 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHH----HTTSC--------HHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHH----HhCCC--------HHHHHHHHHHCCCCc
Confidence 3568899999999999876544 34433 334467777665443
No 25
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=27.53 E-value=24 Score=26.69 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCChhhHHHHH
Q 043203 7 VRAANAMKAIGIVDKQVQTVL 27 (613)
Q Consensus 7 ~~A~~am~~lG~~~~~v~~vl 27 (613)
..|+..+..|||++.+|+.+|
T Consensus 5 ~eaI~rL~~mGF~~~~a~~Al 25 (47)
T 1dv0_A 5 KEAIERLKALGFPESLVIQAY 25 (47)
T ss_dssp HHHHTTTTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 357888999999999987764
No 26
>3iuz_A Putative glyoxalase superfamily protein; struct genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: MLY P6G PGE; 1.90A {Ralstonia eutropha}
Probab=25.45 E-value=28 Score=36.64 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=32.4
Q ss_pred CCChhhHHHHHHHHHHHhccCccccccchhHHHHH
Q 043203 17 GIVDKQVQTVLVNLLELFNWNWEYIEAEDYRALKD 51 (613)
Q Consensus 17 G~~~~~v~~vlk~Ll~~y~~nW~~iEe~~Yr~l~d 51 (613)
|.+..++..+|.++++.|.+.|..+..+.|+.|.+
T Consensus 187 ~l~~~~a~~~l~~~l~~F~~~w~~~s~~~Y~~L~~ 221 (340)
T 3iuz_A 187 VLTVADGAELIGLLVPCFERQHGVPRLADYETLLR 221 (340)
T ss_dssp EECHHHHHHHHHHHGGGSSCCSCCCBHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 77888899999999999999999999999999975
No 27
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=25.03 E-value=50 Score=27.40 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHH
Q 043203 6 AVRAANAMKAIGIVDKQVQTVLVN 29 (613)
Q Consensus 6 ~~~A~~am~~lG~~~~~v~~vlk~ 29 (613)
.+.+++.+..|||++.+|+..|+.
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~ 52 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAA 52 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHH
Confidence 466789999999999999887763
No 28
>2l61_A EC protein I/II; metallothionein, wheat EC-1, Zn binding, metal-thiolate CLUS metal binding protein; NMR {Triticum aestivum} PDB: 2l62_A
Probab=22.68 E-value=24 Score=24.35 Aligned_cols=12 Identities=50% Similarity=1.459 Sum_probs=10.3
Q ss_pred cCCCCCCCCCCC
Q 043203 585 CWRKCGCSMQCQ 596 (613)
Q Consensus 585 Cn~~CgC~~~C~ 596 (613)
|++.|+|..-|.
T Consensus 4 cnd~cGCpvPCp 15 (26)
T 2l61_A 4 CDDKCGCAVPCP 15 (26)
T ss_dssp CCGGGSSCSSCS
T ss_pred ccCCCCCcccCC
Confidence 899999987775
No 29
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=22.36 E-value=65 Score=27.06 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=23.8
Q ss_pred HHHHhcCCChhhHHHHHHHHHHHhcc
Q 043203 11 NAMKAIGIVDKQVQTVLVNLLELFNW 36 (613)
Q Consensus 11 ~am~~lG~~~~~v~~vlk~Ll~~y~~ 36 (613)
..|+.|||.+-+|..|+|.|=+.|+.
T Consensus 42 ~~Lr~LGi~eGDIIrVmk~l~~k~~r 67 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVMKHLDKKFGR 67 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCchhhHHHHHHHHHHHhCc
Confidence 46899999999999999999999975
No 30
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=22.25 E-value=26 Score=33.46 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=32.1
Q ss_pred ChhhHHHHHHHHHHHhccCccccccchhHHHHHhhhhhcc
Q 043203 19 VDKQVQTVLVNLLELFNWNWEYIEAEDYRALKDTYFDFKE 58 (613)
Q Consensus 19 ~~~~v~~vlk~Ll~~y~~nW~~iEe~~Yr~l~dai~d~~e 58 (613)
.+++++++|+++++.|+-.|..-..+-|.+|+-+|+-.|-
T Consensus 7 ~~~~~~~~v~~~~~~f~~~~~~~~~~~fe~Lv~~ILsqqt 46 (207)
T 3fhg_A 7 QNPKVRARVLERVDEFRLNNLSNEEVWFRELTLCLLTANS 46 (207)
T ss_dssp HCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHHHhhccCCCcCCHHHHHHHHHHcCCC
Confidence 5678999999999999533334578899999999997553
No 31
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=21.69 E-value=61 Score=24.37 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHHhcCCChhh-HHHHH
Q 043203 2 DRERAVRAANAMKAIGIVDKQ-VQTVL 27 (613)
Q Consensus 2 ~~~r~~~A~~am~~lG~~~~~-v~~vl 27 (613)
|..|....+..+..|||.+.+ ++..|
T Consensus 3 p~~~~~~~i~~L~~MGF~d~~~~~~AL 29 (46)
T 2bwb_A 3 PEERYEHQLRQLNDMGFFDFDRNVAAL 29 (46)
T ss_dssp HHHHTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 346778889999999997554 34443
No 32
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=21.60 E-value=57 Score=29.18 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=20.2
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHhccC
Q 043203 9 AANAMKAIGIVDKQVQTVLVNLLELFNWN 37 (613)
Q Consensus 9 A~~am~~lG~~~~~v~~vlk~Ll~~y~~n 37 (613)
++..+..|||+.++|+.+| ++++||
T Consensus 79 ~v~~L~eMGF~~~~a~~AL----~~~~nd 103 (118)
T 4ae4_A 79 LMSKFKEMGFELKDIKEVL----LLHNND 103 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHH----HHTTTC
T ss_pred HHHHHHHcCCCHHHHHHHH----HHcCCC
Confidence 4888999999999988765 567765
No 33
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=20.87 E-value=30 Score=28.75 Aligned_cols=24 Identities=17% Similarity=0.577 Sum_probs=16.7
Q ss_pred ChhhHHHHHHHHHHHhccCcccccc
Q 043203 19 VDKQVQTVLVNLLELFNWNWEYIEA 43 (613)
Q Consensus 19 ~~~~v~~vlk~Ll~~y~~nW~~iEe 43 (613)
++.+- ..|.++++.|+++|..|.+
T Consensus 22 T~eEd-~~Ll~~v~~~G~~W~~IA~ 45 (79)
T 2yus_A 22 TEQET-LLLLEALEMYKDDWNKVSE 45 (79)
T ss_dssp CHHHH-HHHHHHHHHSSSCHHHHHH
T ss_pred CHHHH-HHHHHHHHHhCCCHHHHHH
Confidence 33343 3566789999999988853
No 34
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=20.44 E-value=67 Score=28.02 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=34.7
Q ss_pred HhcCCChhhHHHHHHHHHHHhccCccccccchhHHHHHhhhhhcccc
Q 043203 14 KAIGIVDKQVQTVLVNLLELFNWNWEYIEAEDYRALKDTYFDFKENQ 60 (613)
Q Consensus 14 ~~lG~~~~~v~~vlk~Ll~~y~~nW~~iEe~~Yr~l~dai~d~~e~~ 60 (613)
..|||+...|+.++.+=+...++|..-+| .|+++||..++..
T Consensus 35 lemGf~~~~V~~~v~~ki~~sG~~y~Tve-----~Lv~~ll~~~e~~ 76 (104)
T 2kna_A 35 IRMGFSFKDIKKIMEEKIQISGSNYKSLE-----VLVADLVNAQKDS 76 (104)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHSSCCSSHH-----HHHHHHHHHHHSC
T ss_pred HHcCccHHHHHHHHHHHHHHhCCCcCCHH-----HHHHHHHHHHHhh
Confidence 36899999999999998889987776665 4899999888764
Done!