Query 043204
Match_columns 504
No_of_seqs 700 out of 1875
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 02:32:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.6E-70 3.5E-75 539.1 58.6 484 4-501 366-874 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.2E-70 7E-75 537.0 55.1 482 6-504 404-910 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 4.6E-67 1E-71 525.1 49.6 472 5-500 149-651 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 3.7E-67 8.1E-72 525.8 47.0 466 5-502 219-685 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.1E-66 2.5E-71 510.1 48.1 472 7-504 86-558 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.5E-62 3.2E-67 481.1 46.6 436 43-502 85-522 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.3E-31 4.9E-36 274.5 56.2 466 11-502 434-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.1E-30 8.8E-35 265.2 56.0 465 13-502 334-798 (899)
9 PRK11447 cellulose synthase su 100.0 9.1E-23 2E-27 210.7 54.2 476 7-502 61-699 (1157)
10 PRK11447 cellulose synthase su 99.9 2.9E-22 6.3E-27 207.0 53.6 466 12-502 116-739 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.8E-22 3.9E-27 177.9 38.3 439 13-481 53-498 (966)
12 PRK11788 tetratricopeptide rep 99.9 1.5E-21 3.3E-26 180.4 33.7 313 51-419 41-363 (389)
13 PRK11788 tetratricopeptide rep 99.9 3.8E-21 8.2E-26 177.7 35.6 301 89-438 44-353 (389)
14 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-19 3.4E-24 175.5 48.3 426 13-467 132-571 (615)
15 PRK15174 Vi polysaccharide exp 99.9 2.5E-19 5.4E-24 173.3 44.3 296 13-324 47-346 (656)
16 TIGR00990 3a0801s09 mitochondr 99.9 4.7E-19 1E-23 172.2 46.2 427 48-502 130-570 (615)
17 PRK09782 bacteriophage N4 rece 99.9 2E-18 4.3E-23 170.9 50.1 184 308-502 521-705 (987)
18 KOG4626 O-linked N-acetylgluco 99.9 2.2E-20 4.7E-25 165.0 31.9 407 15-448 89-500 (966)
19 PRK15174 Vi polysaccharide exp 99.9 5.8E-19 1.3E-23 170.8 44.5 361 18-431 15-380 (656)
20 PRK10049 pgaA outer membrane p 99.9 1.2E-18 2.5E-23 172.4 46.6 416 47-482 17-469 (765)
21 PRK14574 hmsH outer membrane p 99.9 1.2E-17 2.6E-22 162.0 50.0 435 14-465 40-511 (822)
22 KOG2002 TPR-containing nuclear 99.9 1.3E-18 2.7E-23 161.8 40.8 472 16-501 207-743 (1018)
23 PRK10049 pgaA outer membrane p 99.9 1.3E-18 2.8E-23 172.2 43.7 418 66-503 3-456 (765)
24 PRK09782 bacteriophage N4 rece 99.9 2.1E-17 4.5E-22 163.8 48.3 259 225-499 477-736 (987)
25 KOG4422 Uncharacterized conser 99.9 3.5E-16 7.5E-21 132.7 40.1 380 114-500 206-622 (625)
26 KOG2002 TPR-containing nuclear 99.8 1.8E-16 3.8E-21 147.8 39.1 449 7-467 269-745 (1018)
27 PRK14574 hmsH outer membrane p 99.8 5.4E-15 1.2E-19 143.8 45.3 412 13-444 73-523 (822)
28 KOG2003 TPR repeat-containing 99.8 1.2E-15 2.5E-20 130.6 34.3 466 16-502 209-721 (840)
29 KOG4422 Uncharacterized conser 99.8 1.5E-14 3.3E-19 122.9 35.4 236 9-254 208-462 (625)
30 KOG2076 RNA polymerase III tra 99.8 8.8E-14 1.9E-18 129.2 42.9 186 21-212 152-342 (895)
31 KOG1915 Cell cycle control pro 99.8 2E-13 4.3E-18 117.7 41.0 426 20-465 85-583 (677)
32 KOG2076 RNA polymerase III tra 99.8 1.5E-13 3.3E-18 127.7 41.6 306 7-322 172-552 (895)
33 KOG2003 TPR repeat-containing 99.8 2.3E-15 5.1E-20 128.8 27.3 439 48-502 204-688 (840)
34 KOG0495 HAT repeat protein [RN 99.8 1.3E-12 2.9E-17 117.2 44.9 460 13-501 411-878 (913)
35 KOG1915 Cell cycle control pro 99.7 1.2E-12 2.5E-17 113.1 41.2 441 45-503 73-536 (677)
36 KOG0495 HAT repeat protein [RN 99.7 7E-12 1.5E-16 112.7 43.5 450 8-482 440-894 (913)
37 PF13429 TPR_15: Tetratricopep 99.7 3.5E-16 7.6E-21 136.8 15.0 263 230-502 13-276 (280)
38 PF13429 TPR_15: Tetratricopep 99.7 2.5E-16 5.5E-21 137.6 12.1 228 13-254 13-243 (280)
39 KOG0547 Translocase of outer m 99.7 4.1E-13 8.9E-18 116.3 30.6 419 15-466 122-565 (606)
40 TIGR00540 hemY_coli hemY prote 99.7 3.6E-13 7.7E-18 124.0 32.2 297 56-394 95-397 (409)
41 TIGR00540 hemY_coli hemY prote 99.7 2.2E-13 4.8E-18 125.3 30.2 133 330-465 262-397 (409)
42 COG2956 Predicted N-acetylgluc 99.7 1E-12 2.2E-17 107.9 29.3 290 93-395 48-346 (389)
43 PRK10747 putative protoheme IX 99.7 1.4E-12 3E-17 119.4 32.9 149 308-466 241-389 (398)
44 PRK10747 putative protoheme IX 99.6 1.1E-12 2.3E-17 120.1 31.7 284 58-394 97-388 (398)
45 KOG1155 Anaphase-promoting com 99.6 2.1E-11 4.5E-16 105.3 35.9 259 158-431 234-494 (559)
46 KOG4318 Bicoid mRNA stability 99.6 1.7E-12 3.7E-17 120.4 30.6 250 30-309 12-284 (1088)
47 COG2956 Predicted N-acetylgluc 99.6 4.2E-12 9.1E-17 104.4 27.5 225 21-254 48-278 (389)
48 KOG1155 Anaphase-promoting com 99.6 1.1E-10 2.4E-15 100.9 36.4 383 44-467 163-553 (559)
49 COG3071 HemY Uncharacterized e 99.6 3.6E-11 7.8E-16 102.1 32.8 299 128-472 97-395 (400)
50 COG3071 HemY Uncharacterized e 99.6 2.5E-11 5.5E-16 103.0 31.5 299 93-437 97-395 (400)
51 KOG1126 DNA-binding cell divis 99.6 9.2E-13 2E-17 118.7 23.0 195 152-360 422-620 (638)
52 KOG0547 Translocase of outer m 99.6 1.5E-10 3.3E-15 100.7 35.1 414 48-500 118-563 (606)
53 KOG1126 DNA-binding cell divis 99.5 1.1E-12 2.3E-17 118.3 20.6 287 21-330 332-625 (638)
54 KOG2047 mRNA splicing factor [ 99.5 1.6E-09 3.5E-14 97.7 39.8 473 11-502 105-650 (835)
55 KOG1156 N-terminal acetyltrans 99.5 5.4E-10 1.2E-14 100.8 36.8 428 19-469 18-470 (700)
56 KOG2376 Signal recognition par 99.5 1.3E-08 2.8E-13 91.2 41.0 456 15-500 19-517 (652)
57 KOG1173 Anaphase-promoting com 99.5 2.3E-10 5E-15 101.5 30.0 285 112-413 241-532 (611)
58 PRK12370 invasion protein regu 99.5 6.1E-11 1.3E-15 113.5 28.4 148 61-212 320-467 (553)
59 KOG4318 Bicoid mRNA stability 99.5 1.4E-11 3.1E-16 114.5 22.6 276 66-382 11-286 (1088)
60 TIGR02521 type_IV_pilW type IV 99.5 4.1E-11 9E-16 102.5 24.6 202 44-253 30-231 (234)
61 KOG3785 Uncharacterized conser 99.5 1.3E-09 2.8E-14 91.2 31.4 430 15-477 29-498 (557)
62 TIGR02521 type_IV_pilW type IV 99.5 3.1E-11 6.7E-16 103.3 23.3 196 10-212 33-229 (234)
63 KOG1156 N-terminal acetyltrans 99.5 2.5E-08 5.5E-13 90.4 41.7 424 17-465 50-509 (700)
64 KOG1173 Anaphase-promoting com 99.5 1.4E-09 3.1E-14 96.6 32.8 449 10-483 18-532 (611)
65 KOG2047 mRNA splicing factor [ 99.4 6.6E-08 1.4E-12 87.6 40.2 222 231-460 483-716 (835)
66 PF12569 NARP1: NMDA receptor- 99.4 1.6E-08 3.4E-13 93.8 37.7 292 15-324 11-333 (517)
67 PF13041 PPR_2: PPR repeat fam 99.4 7.1E-13 1.5E-17 80.9 6.1 50 149-198 1-50 (50)
68 PF12569 NARP1: NMDA receptor- 99.4 2.1E-09 4.6E-14 99.5 30.9 299 50-395 9-333 (517)
69 KOG3785 Uncharacterized conser 99.4 1.3E-08 2.7E-13 85.4 31.8 420 52-500 29-487 (557)
70 PRK12370 invasion protein regu 99.4 1E-09 2.3E-14 105.2 28.5 248 165-467 275-535 (553)
71 PF13041 PPR_2: PPR repeat fam 99.4 2E-12 4.3E-17 78.9 6.4 50 436-485 1-50 (50)
72 KOG1840 Kinesin light chain [C 99.4 2E-09 4.3E-14 98.4 28.1 252 75-356 194-475 (508)
73 KOG1129 TPR repeat-containing 99.3 3.1E-10 6.7E-15 93.7 19.5 231 84-325 227-458 (478)
74 KOG1129 TPR repeat-containing 99.3 7.2E-10 1.6E-14 91.6 21.5 228 155-394 227-456 (478)
75 KOG4162 Predicted calmodulin-b 99.3 2.9E-07 6.3E-12 85.4 40.3 384 109-501 317-781 (799)
76 KOG1840 Kinesin light chain [C 99.3 2.6E-09 5.7E-14 97.6 26.1 251 186-465 199-477 (508)
77 KOG4162 Predicted calmodulin-b 99.3 4.3E-08 9.3E-13 90.7 33.2 430 7-467 322-783 (799)
78 COG3063 PilF Tfp pilus assembl 99.3 2.7E-09 5.8E-14 84.1 21.7 200 47-254 37-236 (250)
79 KOG2376 Signal recognition par 99.3 1E-07 2.2E-12 85.7 32.6 425 47-502 14-486 (652)
80 KOG1914 mRNA cleavage and poly 99.3 1E-06 2.3E-11 78.5 37.2 149 347-500 347-498 (656)
81 KOG1174 Anaphase-promoting com 99.3 2.5E-07 5.4E-12 79.5 32.3 266 183-465 229-498 (564)
82 KOG4340 Uncharacterized conser 99.2 4.2E-08 9E-13 80.4 26.5 353 11-395 13-374 (459)
83 COG3063 PilF Tfp pilus assembl 99.2 3.7E-09 8E-14 83.3 19.7 194 12-212 39-233 (250)
84 KOG1174 Anaphase-promoting com 99.2 1.1E-06 2.5E-11 75.6 35.6 289 128-433 209-501 (564)
85 PRK11189 lipoprotein NlpI; Pro 99.2 1.4E-08 3.1E-13 89.0 23.9 224 20-255 38-266 (296)
86 PRK11189 lipoprotein NlpI; Pro 99.2 1.2E-08 2.7E-13 89.4 22.9 190 11-212 67-262 (296)
87 KOG4340 Uncharacterized conser 99.2 4E-07 8.6E-12 74.9 28.9 360 45-429 10-372 (459)
88 cd05804 StaR_like StaR_like; a 99.2 3.6E-08 7.9E-13 90.1 25.9 305 11-325 9-336 (355)
89 cd05804 StaR_like StaR_like; a 99.1 3E-07 6.4E-12 84.1 30.9 308 44-360 5-336 (355)
90 KOG0548 Molecular co-chaperone 99.1 8.1E-07 1.8E-11 79.2 31.3 105 16-125 10-114 (539)
91 PF04733 Coatomer_E: Coatomer 99.1 9.2E-08 2E-12 82.6 22.4 250 89-396 10-265 (290)
92 KOG1125 TPR repeat-containing 99.1 3.4E-08 7.4E-13 88.4 20.0 226 15-254 292-527 (579)
93 KOG3616 Selective LIM binding 99.1 1E-06 2.2E-11 81.6 29.3 53 411-466 971-1023(1636)
94 KOG0624 dsRNA-activated protei 99.0 7.4E-06 1.6E-10 69.0 34.7 206 158-396 162-370 (504)
95 PRK04841 transcriptional regul 99.0 3.6E-06 7.8E-11 87.3 36.3 344 89-433 383-761 (903)
96 PRK04841 transcriptional regul 99.0 1.6E-06 3.5E-11 89.8 33.3 344 53-396 382-760 (903)
97 PF04733 Coatomer_E: Coatomer 99.0 3E-08 6.6E-13 85.5 16.6 127 332-465 132-263 (290)
98 KOG0548 Molecular co-chaperone 99.0 2.9E-06 6.4E-11 75.8 27.7 106 52-161 9-114 (539)
99 KOG1127 TPR repeat-containing 99.0 8.8E-06 1.9E-10 78.1 32.1 466 15-500 569-1101(1238)
100 KOG3616 Selective LIM binding 98.9 2.8E-06 6.1E-11 78.7 27.2 109 303-426 739-847 (1636)
101 KOG0985 Vesicle coat protein c 98.9 2.7E-05 5.9E-10 75.0 33.9 318 12-393 988-1305(1666)
102 TIGR03302 OM_YfiO outer membra 98.9 1.5E-07 3.2E-12 80.3 17.2 181 11-212 36-229 (235)
103 KOG3617 WD40 and TPR repeat-co 98.9 3E-06 6.5E-11 79.5 25.8 231 17-288 737-994 (1416)
104 KOG1070 rRNA processing protei 98.9 2.1E-06 4.6E-11 85.0 25.7 134 298-434 1532-1665(1710)
105 KOG0985 Vesicle coat protein c 98.9 0.0001 2.2E-09 71.3 36.0 382 44-499 983-1366(1666)
106 KOG1127 TPR repeat-containing 98.9 2E-05 4.4E-10 75.8 31.0 421 22-461 472-946 (1238)
107 KOG1128 Uncharacterized conser 98.9 2.4E-06 5.2E-11 79.1 24.1 211 192-466 404-615 (777)
108 PLN02789 farnesyltranstransfer 98.8 4.1E-06 8.9E-11 73.5 24.1 213 12-237 41-267 (320)
109 KOG0624 dsRNA-activated protei 98.8 5.4E-05 1.2E-09 64.0 32.1 330 45-433 38-371 (504)
110 KOG3617 WD40 and TPR repeat-co 98.8 0.00018 3.8E-09 68.2 36.8 167 16-212 808-993 (1416)
111 KOG1125 TPR repeat-containing 98.8 2.3E-06 5E-11 77.1 20.2 250 234-494 294-562 (579)
112 KOG1128 Uncharacterized conser 98.8 7.9E-06 1.7E-10 75.9 23.6 232 154-412 401-632 (777)
113 COG5010 TadD Flp pilus assembl 98.7 1E-06 2.2E-11 71.5 15.5 177 27-212 52-228 (257)
114 PF12854 PPR_1: PPR repeat 98.7 1.9E-08 4.1E-13 54.8 4.0 32 181-212 2-33 (34)
115 KOG1070 rRNA processing protei 98.7 1E-05 2.2E-10 80.5 24.8 232 112-387 1455-1691(1710)
116 COG5010 TadD Flp pilus assembl 98.7 4.2E-06 9.1E-11 68.0 18.7 168 77-254 64-231 (257)
117 PRK14720 transcript cleavage f 98.7 1.2E-05 2.7E-10 78.8 25.5 238 44-342 30-268 (906)
118 PF12854 PPR_1: PPR repeat 98.7 1.7E-08 3.7E-13 54.9 3.5 32 398-429 2-33 (34)
119 TIGR03302 OM_YfiO outer membra 98.7 4.1E-06 8.9E-11 71.4 19.9 188 44-254 32-232 (235)
120 KOG2053 Mitochondrial inherita 98.7 0.00045 9.8E-09 66.2 45.3 453 18-499 19-532 (932)
121 PRK10370 formate-dependent nit 98.6 1.1E-06 2.4E-11 71.6 13.8 157 15-190 23-182 (198)
122 PRK15179 Vi polysaccharide bio 98.6 1.4E-06 3.1E-11 84.3 16.4 131 8-143 86-216 (694)
123 KOG3081 Vesicle coat complex C 98.6 2.8E-05 6.1E-10 63.3 20.6 86 306-396 147-236 (299)
124 PRK14720 transcript cleavage f 98.6 3E-05 6.5E-10 76.2 24.8 204 8-255 31-253 (906)
125 PLN02789 farnesyltranstransfer 98.6 7.1E-05 1.5E-09 65.8 25.0 196 48-253 40-249 (320)
126 PRK10370 formate-dependent nit 98.6 1.7E-05 3.6E-10 64.8 19.8 162 302-482 22-186 (198)
127 PRK15359 type III secretion sy 98.6 9.3E-07 2E-11 68.1 11.7 109 28-144 13-121 (144)
128 PRK15359 type III secretion sy 98.6 3.6E-06 7.7E-11 64.9 14.7 108 66-180 14-121 (144)
129 KOG3081 Vesicle coat complex C 98.5 0.00024 5.2E-09 58.1 23.5 219 15-256 15-238 (299)
130 PRK15179 Vi polysaccharide bio 98.5 3.1E-05 6.7E-10 75.3 21.5 145 44-193 85-229 (694)
131 COG4783 Putative Zn-dependent 98.5 2E-05 4.4E-10 69.9 17.3 140 51-212 312-451 (484)
132 TIGR02552 LcrH_SycD type III s 98.4 1E-05 2.3E-10 62.0 13.6 96 45-142 17-112 (135)
133 PF09976 TPR_21: Tetratricopep 98.4 9.9E-06 2.1E-10 62.7 13.1 85 21-105 24-110 (145)
134 COG4783 Putative Zn-dependent 98.4 0.0007 1.5E-08 60.5 24.4 240 15-290 209-454 (484)
135 TIGR02552 LcrH_SycD type III s 98.3 4.7E-05 1E-09 58.4 14.6 117 67-189 5-121 (135)
136 TIGR00756 PPR pentatricopeptid 98.3 1.6E-06 3.4E-11 48.2 4.5 33 440-472 2-34 (35)
137 KOG3060 Uncharacterized conser 98.3 0.00074 1.6E-08 54.9 20.3 191 200-396 26-220 (289)
138 TIGR00756 PPR pentatricopeptid 98.3 1.8E-06 3.9E-11 47.9 4.1 33 153-185 2-34 (35)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.6E-05 7.7E-10 69.1 14.1 128 46-180 170-297 (395)
140 PF13812 PPR_3: Pentatricopept 98.2 1.9E-06 4E-11 47.5 4.0 33 152-184 2-34 (34)
141 PF13812 PPR_3: Pentatricopept 98.2 2.5E-06 5.4E-11 46.9 4.5 33 439-471 2-34 (34)
142 KOG3060 Uncharacterized conser 98.2 0.00056 1.2E-08 55.6 19.0 188 20-212 24-217 (289)
143 PF09976 TPR_21: Tetratricopep 98.2 0.00018 3.8E-09 55.8 15.2 125 47-176 14-143 (145)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00014 3.1E-09 65.3 16.4 126 296-430 169-295 (395)
145 KOG2041 WD40 repeat protein [G 98.1 0.005 1.1E-07 57.7 25.5 124 43-177 690-822 (1189)
146 cd00189 TPR Tetratricopeptide 98.1 3.1E-05 6.7E-10 55.2 9.6 93 12-108 4-96 (100)
147 TIGR02795 tol_pal_ybgF tol-pal 98.1 5.6E-05 1.2E-09 56.4 11.2 101 10-110 4-106 (119)
148 KOG1914 mRNA cleavage and poly 98.1 0.0071 1.5E-07 55.0 37.5 151 347-503 309-464 (656)
149 PF12895 Apc3: Anaphase-promot 98.1 7.6E-06 1.7E-10 56.4 5.4 82 21-105 2-83 (84)
150 PRK10866 outer membrane biogen 98.1 0.00077 1.7E-08 57.0 18.0 180 50-252 37-239 (243)
151 PF05843 Suf: Suppressor of fo 98.0 0.00016 3.4E-09 62.9 13.8 132 47-180 3-136 (280)
152 PF10037 MRP-S27: Mitochondria 98.0 9.3E-05 2E-09 66.8 12.6 121 259-380 64-186 (429)
153 KOG2053 Mitochondrial inherita 98.0 0.018 4E-07 55.8 44.6 201 5-212 39-252 (932)
154 PRK15363 pathogenicity island 98.0 0.00012 2.7E-09 55.4 10.2 104 44-149 34-137 (157)
155 PF10037 MRP-S27: Mitochondria 98.0 0.00021 4.5E-09 64.6 13.4 125 110-238 61-186 (429)
156 KOG0550 Molecular chaperone (D 98.0 0.011 2.3E-07 52.1 23.8 87 272-362 260-352 (486)
157 PLN03088 SGT1, suppressor of 98.0 0.00016 3.4E-09 65.3 12.7 93 14-110 8-100 (356)
158 PF01535 PPR: PPR repeat; Int 98.0 1.4E-05 2.9E-10 42.8 3.7 29 440-468 2-30 (31)
159 PF14559 TPR_19: Tetratricopep 98.0 3.7E-05 8E-10 50.5 6.5 62 19-85 2-63 (68)
160 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.012 2.7E-07 52.3 28.4 128 298-431 399-530 (660)
161 PF14938 SNAP: Soluble NSF att 97.9 0.0065 1.4E-07 53.2 21.3 208 86-356 41-262 (282)
162 PF12895 Apc3: Anaphase-promot 97.9 3.8E-05 8.2E-10 52.9 5.9 82 380-463 2-83 (84)
163 PF01535 PPR: PPR repeat; Int 97.9 1.9E-05 4.2E-10 42.2 3.5 29 405-433 2-30 (31)
164 PF08579 RPM2: Mitochondrial r 97.9 0.00046 1E-08 48.5 10.7 79 155-237 29-116 (120)
165 PF13432 TPR_16: Tetratricopep 97.9 4.6E-05 1E-09 49.5 5.6 59 14-75 3-61 (65)
166 PF05843 Suf: Suppressor of fo 97.9 0.00031 6.6E-09 61.1 12.2 129 298-431 3-135 (280)
167 COG4700 Uncharacterized protei 97.9 0.0075 1.6E-07 46.8 18.1 134 77-212 86-219 (251)
168 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00095 2.1E-08 49.7 13.5 97 369-467 4-105 (119)
169 cd00189 TPR Tetratricopeptide 97.8 0.00034 7.4E-09 49.6 10.7 91 49-141 4-94 (100)
170 PRK15363 pathogenicity island 97.8 0.002 4.4E-08 49.0 14.4 91 86-179 41-131 (157)
171 PF14938 SNAP: Soluble NSF att 97.8 0.0012 2.6E-08 57.7 15.5 163 83-251 78-263 (282)
172 PF13525 YfiO: Outer membrane 97.8 0.0029 6.3E-08 52.2 16.7 61 15-75 12-72 (203)
173 PRK10153 DNA-binding transcrip 97.8 0.00071 1.5E-08 63.9 14.6 63 115-180 420-482 (517)
174 PF08579 RPM2: Mitochondrial r 97.8 0.00045 9.7E-09 48.5 9.6 80 48-127 28-116 (120)
175 CHL00033 ycf3 photosystem I as 97.8 0.00029 6.3E-09 56.2 10.4 115 24-140 15-138 (168)
176 KOG2114 Vacuolar assembly/sort 97.8 0.029 6.2E-07 54.1 24.1 55 372-431 710-764 (933)
177 PRK02603 photosystem I assembl 97.8 0.00074 1.6E-08 54.1 12.5 114 46-165 36-165 (172)
178 PRK10153 DNA-binding transcrip 97.7 0.0023 5E-08 60.6 16.4 145 326-477 332-490 (517)
179 PRK10866 outer membrane biogen 97.7 0.023 5E-07 48.2 21.4 180 85-288 37-239 (243)
180 PF07079 DUF1347: Protein of u 97.7 0.04 8.7E-07 49.3 37.0 446 17-500 15-521 (549)
181 PLN03088 SGT1, suppressor of 97.6 0.0017 3.6E-08 58.8 13.7 92 51-144 8-99 (356)
182 KOG2041 WD40 repeat protein [G 97.6 0.062 1.4E-06 50.8 25.7 217 60-321 678-903 (1189)
183 CHL00033 ycf3 photosystem I as 97.6 0.0025 5.3E-08 50.9 13.3 95 117-212 37-139 (168)
184 PRK02603 photosystem I assembl 97.6 0.0089 1.9E-07 47.9 16.5 90 151-245 35-126 (172)
185 COG4235 Cytochrome c biogenesi 97.6 0.0031 6.7E-08 53.2 14.0 111 27-142 141-254 (287)
186 PF06239 ECSIT: Evolutionarily 97.6 0.0016 3.4E-08 52.1 11.0 89 364-453 44-153 (228)
187 KOG0553 TPR repeat-containing 97.5 0.0012 2.5E-08 55.4 10.3 99 340-445 90-189 (304)
188 PRK10803 tol-pal system protei 97.5 0.0016 3.6E-08 55.5 11.5 96 15-110 150-247 (263)
189 KOG0553 TPR repeat-containing 97.5 0.0014 3.1E-08 54.9 10.7 102 53-159 89-190 (304)
190 PF14559 TPR_19: Tetratricopep 97.5 0.00032 7E-09 46.0 5.7 64 414-480 2-65 (68)
191 KOG2796 Uncharacterized conser 97.5 0.011 2.3E-07 48.7 14.5 129 83-212 180-312 (366)
192 COG4235 Cytochrome c biogenesi 97.4 0.0027 5.8E-08 53.6 11.4 103 6-112 154-259 (287)
193 KOG2280 Vacuolar assembly/sort 97.4 0.12 2.7E-06 49.4 23.8 114 329-463 682-795 (829)
194 PF13414 TPR_11: TPR repeat; P 97.4 0.0002 4.3E-09 47.1 3.8 60 11-73 6-66 (69)
195 PF13432 TPR_16: Tetratricopep 97.4 0.00075 1.6E-08 43.7 6.5 58 51-109 3-60 (65)
196 PF12688 TPR_5: Tetratrico pep 97.4 0.0048 1E-07 45.3 11.1 88 16-106 9-101 (120)
197 PF06239 ECSIT: Evolutionarily 97.4 0.0014 3E-08 52.4 8.8 103 294-417 45-152 (228)
198 PF13414 TPR_11: TPR repeat; P 97.4 0.00051 1.1E-08 45.2 5.6 64 44-108 2-66 (69)
199 COG4105 ComL DNA uptake lipopr 97.4 0.058 1.3E-06 44.8 18.9 176 16-212 42-230 (254)
200 PF12688 TPR_5: Tetratrico pep 97.4 0.012 2.6E-07 43.1 12.8 53 55-107 11-65 (120)
201 PF13371 TPR_9: Tetratricopept 97.4 0.0011 2.4E-08 44.1 7.0 58 15-75 2-59 (73)
202 KOG1130 Predicted G-alpha GTPa 97.4 0.0042 9.1E-08 54.4 11.7 138 188-356 197-340 (639)
203 COG3898 Uncharacterized membra 97.3 0.094 2E-06 46.1 27.3 309 23-358 68-390 (531)
204 PF03704 BTAD: Bacterial trans 97.3 0.0036 7.9E-08 48.6 10.1 88 18-106 16-122 (146)
205 PF04840 Vps16_C: Vps16, C-ter 97.3 0.12 2.6E-06 45.7 31.2 141 331-501 177-317 (319)
206 KOG1130 Predicted G-alpha GTPa 97.3 0.0055 1.2E-07 53.7 11.4 135 297-431 196-343 (639)
207 PF03704 BTAD: Bacterial trans 97.2 0.019 4.1E-07 44.5 13.4 72 405-477 64-140 (146)
208 COG4700 Uncharacterized protei 97.2 0.077 1.7E-06 41.4 18.0 133 329-464 87-219 (251)
209 PF12921 ATP13: Mitochondrial 97.1 0.0071 1.5E-07 44.9 9.6 54 360-413 45-98 (126)
210 KOG1538 Uncharacterized conser 97.1 0.21 4.5E-06 47.1 20.4 86 298-395 749-845 (1081)
211 PF13525 YfiO: Outer membrane 97.1 0.12 2.5E-06 42.7 18.7 23 410-432 148-170 (203)
212 PF13371 TPR_9: Tetratricopept 97.1 0.0036 7.9E-08 41.6 7.4 65 411-478 3-67 (73)
213 COG3898 Uncharacterized membra 97.1 0.18 4E-06 44.4 30.9 297 118-471 85-396 (531)
214 PF13424 TPR_12: Tetratricopep 97.0 0.006 1.3E-07 41.2 7.8 67 187-253 6-74 (78)
215 PRK10803 tol-pal system protei 97.0 0.018 3.9E-07 49.3 12.1 95 118-212 146-243 (263)
216 PF10300 DUF3808: Protein of u 96.9 0.07 1.5E-06 50.3 16.6 165 333-501 190-374 (468)
217 PF04840 Vps16_C: Vps16, C-ter 96.9 0.27 5.9E-06 43.5 29.4 109 227-392 179-287 (319)
218 PRK15331 chaperone protein Sic 96.9 0.0091 2E-07 45.8 8.5 93 50-144 42-134 (165)
219 COG3118 Thioredoxin domain-con 96.9 0.12 2.6E-06 43.9 15.3 148 53-205 142-291 (304)
220 KOG2796 Uncharacterized conser 96.9 0.21 4.6E-06 41.5 19.7 130 49-180 181-315 (366)
221 PF12921 ATP13: Mitochondrial 96.8 0.019 4E-07 42.7 9.6 54 144-197 45-99 (126)
222 KOG1538 Uncharacterized conser 96.8 0.079 1.7E-06 49.7 15.2 89 366-466 746-845 (1081)
223 PF10345 Cohesin_load: Cohesin 96.8 0.61 1.3E-05 46.1 30.2 162 13-177 64-251 (608)
224 PF13512 TPR_18: Tetratricopep 96.8 0.029 6.2E-07 42.1 10.2 79 16-94 18-96 (142)
225 KOG0550 Molecular chaperone (D 96.8 0.35 7.6E-06 43.1 24.7 51 89-140 58-108 (486)
226 KOG2280 Vacuolar assembly/sort 96.7 0.64 1.4E-05 44.8 30.3 108 369-497 686-793 (829)
227 KOG4555 TPR repeat-containing 96.7 0.051 1.1E-06 39.5 10.3 92 16-110 51-145 (175)
228 PF08631 SPO22: Meiosis protei 96.7 0.4 8.6E-06 41.9 24.4 88 201-290 51-150 (278)
229 PRK15331 chaperone protein Sic 96.7 0.09 2E-06 40.5 12.2 88 90-180 47-134 (165)
230 PF13424 TPR_12: Tetratricopep 96.7 0.013 2.8E-07 39.5 7.2 24 153-176 48-71 (78)
231 PF13428 TPR_14: Tetratricopep 96.6 0.0034 7.3E-08 36.6 3.6 40 10-52 3-42 (44)
232 PRK11906 transcriptional regul 96.6 0.23 4.9E-06 45.4 16.3 158 12-175 257-431 (458)
233 KOG2114 Vacuolar assembly/sort 96.6 0.8 1.7E-05 44.8 24.5 119 47-178 336-458 (933)
234 PF09205 DUF1955: Domain of un 96.6 0.15 3.3E-06 37.3 12.2 64 405-469 88-151 (161)
235 KOG2610 Uncharacterized conser 96.6 0.18 3.9E-06 43.4 14.7 152 57-212 115-273 (491)
236 PF10345 Cohesin_load: Cohesin 96.6 0.93 2E-05 44.8 41.2 188 25-214 38-253 (608)
237 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.034 7.5E-07 50.3 10.6 64 8-74 75-141 (453)
238 KOG1941 Acetylcholine receptor 96.5 0.17 3.7E-06 44.1 13.8 172 117-288 85-273 (518)
239 smart00299 CLH Clathrin heavy 96.4 0.26 5.7E-06 37.8 14.1 125 49-197 11-136 (140)
240 PF04184 ST7: ST7 protein; In 96.4 0.16 3.4E-06 46.5 14.0 150 14-179 174-323 (539)
241 COG1729 Uncharacterized protei 96.3 0.053 1.1E-06 45.4 9.9 90 20-109 153-244 (262)
242 KOG1941 Acetylcholine receptor 96.3 0.25 5.3E-06 43.2 14.0 235 18-253 16-274 (518)
243 KOG0543 FKBP-type peptidyl-pro 96.2 0.069 1.5E-06 47.3 10.7 94 405-501 259-353 (397)
244 PF10300 DUF3808: Protein of u 96.2 0.38 8.3E-06 45.5 16.4 128 124-254 197-334 (468)
245 PF04184 ST7: ST7 protein; In 96.2 0.77 1.7E-05 42.3 17.1 60 335-394 263-322 (539)
246 PF13281 DUF4071: Domain of un 96.2 0.88 1.9E-05 40.9 19.4 97 116-212 142-252 (374)
247 KOG1920 IkappaB kinase complex 96.2 1.8 3.9E-05 44.4 21.3 82 371-465 943-1026(1265)
248 PF13281 DUF4071: Domain of un 96.2 0.92 2E-05 40.8 19.6 163 301-467 146-334 (374)
249 PF04053 Coatomer_WDAD: Coatom 96.2 0.27 6E-06 45.7 14.9 154 56-250 272-427 (443)
250 smart00299 CLH Clathrin heavy 96.2 0.41 8.9E-06 36.7 14.0 131 7-163 6-137 (140)
251 PF04053 Coatomer_WDAD: Coatom 96.1 0.21 4.5E-06 46.5 13.9 133 297-464 296-428 (443)
252 KOG0543 FKBP-type peptidyl-pro 96.1 0.22 4.7E-06 44.3 12.9 125 16-142 216-353 (397)
253 COG3118 Thioredoxin domain-con 96.0 0.82 1.8E-05 39.0 16.3 177 62-249 120-296 (304)
254 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.33 7.2E-06 44.3 14.1 65 295-359 74-140 (453)
255 KOG1920 IkappaB kinase complex 96.0 2.2 4.7E-05 43.8 23.5 79 303-393 972-1052(1265)
256 PF08631 SPO22: Meiosis protei 96.0 0.99 2.1E-05 39.5 23.9 228 18-252 3-273 (278)
257 COG5107 RNA14 Pre-mRNA 3'-end 95.9 1.3 2.9E-05 40.1 34.3 434 27-485 28-547 (660)
258 PF07079 DUF1347: Protein of u 95.8 1.5 3.2E-05 40.0 40.2 416 13-478 51-530 (549)
259 KOG3941 Intermediate in Toll s 95.6 0.078 1.7E-06 44.4 7.7 88 42-129 64-172 (406)
260 KOG4555 TPR repeat-containing 95.5 0.24 5.2E-06 36.2 9.0 54 54-108 52-105 (175)
261 COG4649 Uncharacterized protei 95.4 0.93 2E-05 35.2 14.9 52 92-143 144-195 (221)
262 KOG3941 Intermediate in Toll s 95.4 0.16 3.5E-06 42.6 9.0 88 295-383 66-174 (406)
263 PF09613 HrpB1_HrpK: Bacterial 95.4 0.75 1.6E-05 35.5 12.0 53 19-74 21-73 (160)
264 PF13431 TPR_17: Tetratricopep 95.4 0.015 3.2E-07 31.5 2.2 32 31-65 2-33 (34)
265 COG1729 Uncharacterized protei 95.4 0.38 8.3E-06 40.5 11.3 13 312-324 157-169 (262)
266 COG4105 ComL DNA uptake lipopr 95.4 1.4 3E-05 36.9 19.3 59 373-431 173-232 (254)
267 PF13428 TPR_14: Tetratricopep 95.3 0.034 7.4E-07 32.3 3.8 39 47-86 3-41 (44)
268 PF10602 RPN7: 26S proteasome 95.2 0.16 3.5E-06 40.6 8.5 100 46-145 37-143 (177)
269 COG4649 Uncharacterized protei 95.2 1.1 2.3E-05 34.9 12.9 64 186-254 59-123 (221)
270 PF13512 TPR_18: Tetratricopep 95.1 0.99 2.1E-05 34.1 11.7 59 91-149 21-81 (142)
271 PF10602 RPN7: 26S proteasome 95.0 0.79 1.7E-05 36.7 11.9 97 81-179 37-141 (177)
272 PF09613 HrpB1_HrpK: Bacterial 94.9 1.4 2.9E-05 34.1 12.1 19 413-431 54-72 (160)
273 COG4785 NlpI Lipoprotein NlpI, 94.7 0.62 1.4E-05 37.6 10.1 182 18-212 75-263 (297)
274 COG4785 NlpI Lipoprotein NlpI, 94.6 1.6 3.4E-05 35.4 11.9 182 64-255 84-267 (297)
275 COG3629 DnrI DNA-binding trans 94.5 0.49 1.1E-05 40.5 9.8 79 367-447 153-236 (280)
276 KOG2066 Vacuolar assembly/sort 94.4 5.5 0.00012 39.1 24.9 156 14-178 362-532 (846)
277 PRK11906 transcriptional regul 94.4 1 2.2E-05 41.4 12.0 114 23-141 319-433 (458)
278 COG3629 DnrI DNA-binding trans 94.3 0.45 9.7E-06 40.8 9.3 70 48-118 156-230 (280)
279 PF00637 Clathrin: Region in C 94.0 0.0044 9.5E-08 47.9 -3.0 85 50-141 12-96 (143)
280 KOG1258 mRNA processing protei 93.8 6.4 0.00014 37.4 31.1 132 9-144 46-180 (577)
281 COG0457 NrfG FOG: TPR repeat [ 93.7 3.8 8.2E-05 34.5 24.3 222 238-465 36-263 (291)
282 PF13176 TPR_7: Tetratricopept 93.6 0.18 3.9E-06 27.6 3.9 26 440-465 1-26 (36)
283 TIGR02561 HrpB1_HrpK type III 93.5 2.6 5.7E-05 32.0 11.5 20 413-432 54-73 (153)
284 PF13170 DUF4003: Protein of u 93.4 5.1 0.00011 35.3 20.9 130 62-194 79-225 (297)
285 PF13170 DUF4003: Protein of u 93.2 5.6 0.00012 35.0 18.5 59 197-255 69-133 (297)
286 KOG1550 Extracellular protein 93.0 9.8 0.00021 37.2 24.3 186 131-326 228-427 (552)
287 PF00637 Clathrin: Region in C 92.9 0.0082 1.8E-07 46.4 -3.1 85 156-251 12-96 (143)
288 PF09205 DUF1955: Domain of un 92.8 3 6.6E-05 30.9 15.6 140 91-257 13-152 (161)
289 KOG2610 Uncharacterized conser 92.8 6.3 0.00014 34.5 16.0 169 90-261 113-283 (491)
290 KOG1464 COP9 signalosome, subu 92.6 5.6 0.00012 33.6 16.5 201 21-223 40-268 (440)
291 COG0457 NrfG FOG: TPR repeat [ 92.6 5.5 0.00012 33.4 25.1 166 46-212 60-228 (291)
292 PF13176 TPR_7: Tetratricopept 92.5 0.35 7.7E-06 26.5 4.0 26 227-252 1-26 (36)
293 COG1747 Uncharacterized N-term 92.1 10 0.00023 35.4 19.2 176 11-196 69-249 (711)
294 KOG0276 Vesicle coat complex C 92.0 3.8 8.3E-05 38.9 11.9 131 83-251 617-747 (794)
295 PF07035 Mic1: Colon cancer-as 92.0 5 0.00011 31.5 16.2 128 66-210 15-144 (167)
296 PF13431 TPR_17: Tetratricopep 91.9 0.16 3.5E-06 27.4 2.1 31 69-100 3-33 (34)
297 KOG2396 HAT (Half-A-TPR) repea 91.7 11 0.00024 35.1 30.1 73 7-83 104-177 (568)
298 PF04097 Nic96: Nup93/Nic96; 91.7 15 0.00032 36.5 22.2 42 50-92 116-157 (613)
299 PF00515 TPR_1: Tetratricopept 91.7 0.4 8.6E-06 25.7 3.6 31 10-40 3-33 (34)
300 PF13174 TPR_6: Tetratricopept 91.7 0.23 4.9E-06 26.3 2.6 28 13-40 5-32 (33)
301 KOG0686 COP9 signalosome, subu 91.2 11 0.00024 34.1 14.1 63 11-73 153-215 (466)
302 PF02284 COX5A: Cytochrome c o 91.1 3.9 8.5E-05 28.7 9.6 47 98-144 28-74 (108)
303 KOG1585 Protein required for f 91.1 8.2 0.00018 32.2 17.2 94 154-249 153-251 (308)
304 KOG1550 Extracellular protein 91.0 17 0.00036 35.7 24.4 176 24-212 228-423 (552)
305 PF07719 TPR_2: Tetratricopept 91.0 0.51 1.1E-05 25.1 3.6 30 11-40 4-33 (34)
306 COG2976 Uncharacterized protei 90.9 3.6 7.8E-05 32.9 9.2 129 11-145 57-189 (207)
307 cd00923 Cyt_c_Oxidase_Va Cytoc 90.9 2.1 4.5E-05 29.6 6.9 48 60-107 22-69 (103)
308 KOG1585 Protein required for f 90.7 9 0.0002 32.0 19.0 26 153-178 33-58 (308)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 90.6 2.2 4.7E-05 29.5 6.7 50 95-144 22-71 (103)
310 PF08424 NRDE-2: NRDE-2, neces 90.6 12 0.00027 33.5 14.7 92 30-126 7-110 (321)
311 PF02284 COX5A: Cytochrome c o 90.4 2.2 4.7E-05 29.8 6.7 63 60-123 25-87 (108)
312 KOG1258 mRNA processing protei 90.2 18 0.00038 34.7 35.0 416 44-487 44-489 (577)
313 PF00515 TPR_1: Tetratricopept 90.2 0.41 8.8E-06 25.7 2.8 27 440-466 3-29 (34)
314 KOG4570 Uncharacterized conser 90.1 1.6 3.5E-05 37.6 7.2 95 117-213 66-162 (418)
315 PF11207 DUF2989: Protein of u 90.0 4.4 9.6E-05 32.8 9.3 83 160-245 116-198 (203)
316 PF02259 FAT: FAT domain; Int 89.9 15 0.00033 33.4 23.3 65 330-395 145-212 (352)
317 KOG4648 Uncharacterized conser 89.5 2.6 5.6E-05 36.8 8.1 52 18-72 107-158 (536)
318 PF07719 TPR_2: Tetratricopept 89.3 0.51 1.1E-05 25.2 2.8 26 441-466 4-29 (34)
319 TIGR02561 HrpB1_HrpK type III 89.3 8.1 0.00018 29.5 11.3 53 20-75 22-74 (153)
320 PF07035 Mic1: Colon cancer-as 89.1 9.5 0.00021 30.0 15.6 135 316-466 14-148 (167)
321 KOG0276 Vesicle coat complex C 89.0 2.9 6.3E-05 39.6 8.6 26 331-356 666-691 (794)
322 KOG4648 Uncharacterized conser 88.9 1.5 3.3E-05 38.2 6.3 55 53-108 105-159 (536)
323 PF08424 NRDE-2: NRDE-2, neces 88.8 12 0.00026 33.6 12.4 79 24-106 47-128 (321)
324 PRK11619 lytic murein transgly 88.7 28 0.0006 34.8 29.7 334 81-465 35-373 (644)
325 PF10579 Rapsyn_N: Rapsyn N-te 87.9 1.1 2.4E-05 29.6 3.8 48 20-67 18-65 (80)
326 COG4455 ImpE Protein of avirul 87.6 5.7 0.00012 32.5 8.3 57 13-72 6-62 (273)
327 KOG4234 TPR repeat-containing 87.6 5.6 0.00012 32.0 8.1 90 54-144 104-197 (271)
328 KOG4570 Uncharacterized conser 87.1 5.4 0.00012 34.6 8.3 105 325-433 58-165 (418)
329 TIGR03504 FimV_Cterm FimV C-te 87.0 1.4 3.1E-05 25.4 3.6 23 444-466 5-27 (44)
330 PF13374 TPR_10: Tetratricopep 87.0 1.9 4.1E-05 24.2 4.3 28 226-253 3-30 (42)
331 COG2976 Uncharacterized protei 86.8 15 0.00032 29.6 13.2 131 45-181 54-189 (207)
332 KOG3807 Predicted membrane pro 86.7 21 0.00046 31.3 12.8 61 119-179 279-339 (556)
333 COG4455 ImpE Protein of avirul 86.7 5.5 0.00012 32.5 7.8 79 47-126 3-83 (273)
334 COG2909 MalT ATP-dependent tra 86.6 39 0.00085 34.3 24.8 231 161-392 425-684 (894)
335 KOG0687 26S proteasome regulat 86.2 23 0.00049 31.1 13.1 68 188-255 106-174 (393)
336 PF13374 TPR_10: Tetratricopep 86.2 2.2 4.8E-05 23.9 4.3 25 406-430 5-29 (42)
337 PF07163 Pex26: Pex26 protein; 86.0 20 0.00043 30.8 10.9 119 20-138 47-181 (309)
338 PF13929 mRNA_stabil: mRNA sta 85.9 22 0.00048 30.8 15.6 59 150-208 201-260 (292)
339 KOG2066 Vacuolar assembly/sort 85.5 42 0.0009 33.5 25.1 102 52-163 363-467 (846)
340 PF06552 TOM20_plant: Plant sp 85.3 17 0.00037 28.9 10.4 62 399-468 64-137 (186)
341 KOG4507 Uncharacterized conser 85.1 35 0.00075 32.8 13.0 112 262-376 608-719 (886)
342 TIGR03504 FimV_Cterm FimV C-te 84.7 3 6.4E-05 24.1 4.1 24 86-109 5-28 (44)
343 KOG0890 Protein kinase of the 84.5 84 0.0018 36.2 23.4 150 85-249 1388-1542(2382)
344 PF13181 TPR_8: Tetratricopept 83.5 1.8 3.9E-05 23.0 2.9 29 11-39 4-32 (34)
345 KOG0687 26S proteasome regulat 83.4 29 0.00063 30.5 11.0 134 328-465 67-208 (393)
346 PF02259 FAT: FAT domain; Int 83.4 35 0.00077 31.0 21.0 193 14-214 4-212 (352)
347 PF13181 TPR_8: Tetratricopept 83.1 3.5 7.5E-05 21.8 4.0 27 440-466 3-29 (34)
348 PRK15180 Vi polysaccharide bio 83.0 24 0.00053 32.8 11.0 88 341-432 333-420 (831)
349 PF11207 DUF2989: Protein of u 82.7 15 0.00032 29.9 8.6 75 130-206 121-198 (203)
350 PF07721 TPR_4: Tetratricopept 82.6 2.2 4.8E-05 21.1 2.8 17 445-461 8-24 (26)
351 KOG1586 Protein required for f 81.9 29 0.00063 29.0 19.1 18 54-71 23-40 (288)
352 COG3947 Response regulator con 81.8 6.2 0.00013 33.8 6.5 58 83-141 282-339 (361)
353 PF13762 MNE1: Mitochondrial s 81.6 21 0.00047 27.3 8.9 81 48-128 42-128 (145)
354 KOG4234 TPR repeat-containing 81.4 16 0.00035 29.6 8.2 59 196-254 105-163 (271)
355 PF10579 Rapsyn_N: Rapsyn N-te 81.3 6.1 0.00013 26.2 5.0 16 371-386 47-62 (80)
356 PF13174 TPR_6: Tetratricopept 81.0 3.4 7.5E-05 21.5 3.4 17 449-465 11-27 (33)
357 COG3947 Response regulator con 80.0 39 0.00085 29.3 14.5 69 406-475 282-355 (361)
358 PRK15180 Vi polysaccharide bio 79.5 54 0.0012 30.7 15.5 125 124-256 298-422 (831)
359 PF11846 DUF3366: Domain of un 79.4 11 0.00023 30.8 7.3 34 398-431 139-172 (193)
360 COG2909 MalT ATP-dependent tra 78.3 84 0.0018 32.1 29.2 56 408-463 623-684 (894)
361 smart00028 TPR Tetratricopepti 78.3 3.3 7.2E-05 20.9 2.9 27 11-37 4-30 (34)
362 PF11817 Foie-gras_1: Foie gra 77.8 44 0.00096 28.6 11.8 23 193-215 17-39 (247)
363 KOG4077 Cytochrome c oxidase, 77.7 17 0.00036 26.8 6.6 45 100-144 69-113 (149)
364 PF06552 TOM20_plant: Plant sp 77.5 21 0.00046 28.4 7.8 98 24-125 7-123 (186)
365 KOG4077 Cytochrome c oxidase, 77.4 13 0.00028 27.4 6.0 46 63-108 67-112 (149)
366 PF12862 Apc5: Anaphase-promot 77.4 19 0.00042 25.1 7.2 59 196-254 8-70 (94)
367 KOG2063 Vacuolar assembly/sort 77.4 94 0.002 32.2 17.9 27 118-144 507-533 (877)
368 smart00386 HAT HAT (Half-A-TPR 76.1 7.3 0.00016 20.1 3.9 29 22-53 1-29 (33)
369 PF14561 TPR_20: Tetratricopep 75.7 24 0.00051 24.5 8.5 63 29-94 9-72 (90)
370 KOG0890 Protein kinase of the 75.4 1.7E+02 0.0036 34.1 24.4 324 120-467 1388-1731(2382)
371 KOG1464 COP9 signalosome, subu 74.8 53 0.0012 28.1 19.4 50 93-142 40-92 (440)
372 PF14669 Asp_Glu_race_2: Putat 74.8 43 0.00093 27.0 13.8 172 291-464 3-207 (233)
373 PF08311 Mad3_BUB1_I: Mad3/BUB 74.2 24 0.00051 26.4 7.2 15 243-257 81-95 (126)
374 COG1747 Uncharacterized N-term 74.1 83 0.0018 29.9 25.0 94 300-395 135-233 (711)
375 PRK10564 maltose regulon perip 74.0 8.9 0.00019 33.3 5.4 44 76-119 252-296 (303)
376 PF11848 DUF3368: Domain of un 74.0 15 0.00033 21.7 5.0 33 449-481 13-45 (48)
377 KOG1308 Hsp70-interacting prot 72.1 3.3 7.2E-05 36.3 2.5 85 57-143 126-210 (377)
378 PF11838 ERAP1_C: ERAP1-like C 71.8 75 0.0016 28.5 18.5 79 131-212 146-227 (324)
379 PF07163 Pex26: Pex26 protein; 71.5 63 0.0014 27.9 9.5 89 301-390 88-181 (309)
380 PF09986 DUF2225: Uncharacteri 70.4 47 0.001 27.7 8.8 97 376-472 86-199 (214)
381 PRK12798 chemotaxis protein; R 70.2 92 0.002 28.8 19.7 199 5-212 78-283 (421)
382 PF14689 SPOB_a: Sensor_kinase 69.4 12 0.00026 23.7 4.1 44 420-465 7-50 (62)
383 COG0790 FOG: TPR repeat, SEL1 69.2 81 0.0018 27.8 20.8 150 21-182 54-222 (292)
384 PF14853 Fis1_TPR_C: Fis1 C-te 69.1 14 0.0003 22.5 4.1 36 444-481 7-42 (53)
385 PRK10941 hypothetical protein; 68.5 29 0.00063 30.1 7.4 76 48-124 184-260 (269)
386 KOG4642 Chaperone-dependent E3 68.3 73 0.0016 26.9 9.8 119 340-464 19-143 (284)
387 KOG4642 Chaperone-dependent E3 68.2 73 0.0016 26.9 10.5 80 22-106 24-104 (284)
388 PF09797 NatB_MDM20: N-acetylt 67.8 46 0.001 30.6 9.2 123 49-175 184-310 (365)
389 PRK09687 putative lyase; Provi 67.1 89 0.0019 27.5 25.5 232 44-306 36-277 (280)
390 COG5159 RPN6 26S proteasome re 66.8 86 0.0019 27.2 15.9 52 51-102 9-67 (421)
391 PF13762 MNE1: Mitochondrial s 66.1 58 0.0013 25.0 11.4 83 405-488 41-129 (145)
392 KOG2908 26S proteasome regulat 66.1 44 0.00095 29.7 7.8 55 198-253 87-143 (380)
393 KOG0376 Serine-threonine phosp 65.8 27 0.00058 32.5 6.9 106 12-123 8-113 (476)
394 PF14689 SPOB_a: Sensor_kinase 65.8 23 0.00049 22.4 4.8 23 408-430 28-50 (62)
395 KOG0403 Neoplastic transformat 65.7 1.2E+02 0.0025 28.4 20.2 74 335-415 513-586 (645)
396 PF11848 DUF3368: Domain of un 65.4 21 0.00045 21.1 4.3 33 414-446 13-45 (48)
397 KOG2471 TPR repeat-containing 65.4 1.3E+02 0.0027 28.6 14.0 107 376-484 249-380 (696)
398 PF11846 DUF3366: Domain of un 65.0 40 0.00087 27.5 7.5 34 363-396 140-173 (193)
399 PF11817 Foie-gras_1: Foie gra 64.9 90 0.002 26.8 16.5 64 189-252 181-245 (247)
400 COG5187 RPN7 26S proteasome re 64.9 95 0.0021 27.0 13.4 97 226-324 116-220 (412)
401 KOG3807 Predicted membrane pro 64.5 1E+02 0.0022 27.3 11.0 17 343-359 287-303 (556)
402 KOG2063 Vacuolar assembly/sort 63.6 1.9E+02 0.0042 30.1 18.6 39 160-198 600-638 (877)
403 PF03745 DUF309: Domain of unk 63.6 35 0.00076 21.6 5.7 47 56-102 10-61 (62)
404 cd00280 TRFH Telomeric Repeat 63.3 44 0.00095 26.7 6.7 23 86-108 117-139 (200)
405 KOG2396 HAT (Half-A-TPR) repea 62.8 1.4E+02 0.0031 28.4 37.6 84 24-111 87-171 (568)
406 PF14853 Fis1_TPR_C: Fis1 C-te 62.6 19 0.00042 21.8 3.8 27 14-40 7-33 (53)
407 KOG4507 Uncharacterized conser 62.2 97 0.0021 30.0 9.8 102 378-484 618-721 (886)
408 PRK11619 lytic murein transgly 62.1 1.8E+02 0.0039 29.3 37.5 60 296-356 312-371 (644)
409 PF07064 RIC1: RIC1; InterPro 62.0 1.1E+02 0.0023 26.6 14.8 24 12-35 86-109 (258)
410 COG5108 RPO41 Mitochondrial DN 61.3 53 0.0012 32.2 8.1 75 13-90 33-113 (1117)
411 KOG1498 26S proteasome regulat 61.1 1.3E+02 0.0029 27.5 14.2 167 21-195 25-257 (439)
412 PF10366 Vps39_1: Vacuolar sor 60.4 62 0.0013 23.4 7.4 27 369-395 41-67 (108)
413 PF11663 Toxin_YhaV: Toxin wit 59.6 13 0.00028 27.8 3.1 31 415-447 107-137 (140)
414 PRK10941 hypothetical protein; 59.4 1.2E+02 0.0026 26.4 10.6 74 337-412 187-260 (269)
415 COG0790 FOG: TPR repeat, SEL1 59.2 1.3E+02 0.0027 26.6 20.6 12 201-212 128-139 (292)
416 KOG2297 Predicted translation 58.9 1.3E+02 0.0028 26.5 17.6 68 275-351 269-341 (412)
417 PF09986 DUF2225: Uncharacteri 58.7 1.1E+02 0.0023 25.6 9.5 16 310-325 179-194 (214)
418 KOG2471 TPR repeat-containing 58.5 1.7E+02 0.0037 27.8 14.5 107 341-450 250-381 (696)
419 smart00165 UBA Ubiquitin assoc 58.4 24 0.00053 19.1 3.6 33 460-497 4-36 (37)
420 KOG2582 COP9 signalosome, subu 58.4 1.4E+02 0.0031 27.0 13.5 241 1-255 68-346 (422)
421 KOG2300 Uncharacterized conser 58.3 1.7E+02 0.0037 27.8 34.9 300 20-320 59-428 (629)
422 PF08311 Mad3_BUB1_I: Mad3/BUB 58.2 76 0.0017 23.7 13.1 43 421-463 81-124 (126)
423 KOG2659 LisH motif-containing 57.1 81 0.0017 26.4 7.6 103 41-143 22-131 (228)
424 KOG2062 26S proteasome regulat 56.9 2.2E+02 0.0048 28.7 26.1 407 1-431 206-634 (929)
425 PRK10564 maltose regulon perip 56.3 27 0.00059 30.5 5.0 36 441-476 260-295 (303)
426 PF15297 CKAP2_C: Cytoskeleton 55.6 72 0.0016 28.6 7.5 63 62-126 120-186 (353)
427 PF04762 IKI3: IKI3 family; I 55.4 2E+02 0.0043 30.7 11.9 200 50-251 699-927 (928)
428 cd08819 CARD_MDA5_2 Caspase ac 54.6 68 0.0015 22.0 6.3 14 129-142 50-63 (88)
429 PHA02875 ankyrin repeat protei 54.1 1.9E+02 0.0042 27.1 11.9 208 234-474 8-231 (413)
430 KOG2659 LisH motif-containing 53.8 1.3E+02 0.0029 25.2 9.6 109 65-178 13-130 (228)
431 PF09454 Vps23_core: Vps23 cor 53.6 29 0.00063 22.2 3.7 45 45-90 8-52 (65)
432 PRK09687 putative lyase; Provi 52.8 1.6E+02 0.0035 25.9 28.5 135 330-482 141-276 (280)
433 PF14561 TPR_20: Tetratricopep 52.7 75 0.0016 22.0 8.1 53 77-129 19-72 (90)
434 COG0735 Fur Fe2+/Zn2+ uptake r 52.3 96 0.0021 23.9 7.1 62 173-239 8-69 (145)
435 PF11663 Toxin_YhaV: Toxin wit 52.0 17 0.00038 27.1 2.8 32 91-124 106-137 (140)
436 PF12069 DUF3549: Protein of u 51.7 1.8E+02 0.004 26.2 12.3 139 334-484 169-309 (340)
437 PRK14956 DNA polymerase III su 51.6 2.3E+02 0.005 27.3 12.3 36 402-437 247-282 (484)
438 KOG2034 Vacuolar sorting prote 51.3 3E+02 0.0065 28.5 30.8 53 14-72 364-416 (911)
439 KOG1114 Tripeptidyl peptidase 50.8 3.2E+02 0.0069 28.7 14.1 69 168-239 1213-1281(1304)
440 PF04910 Tcf25: Transcriptiona 50.7 2E+02 0.0044 26.4 20.6 116 20-142 22-166 (360)
441 TIGR01503 MthylAspMut_E methyl 50.5 53 0.0011 30.7 6.1 152 310-470 68-244 (480)
442 KOG4567 GTPase-activating prot 50.1 1.8E+02 0.0039 25.7 8.7 40 317-356 264-303 (370)
443 PF03745 DUF309: Domain of unk 50.0 59 0.0013 20.6 4.6 15 416-430 12-26 (62)
444 PF12862 Apc5: Anaphase-promot 49.8 86 0.0019 21.8 7.0 18 377-394 51-68 (94)
445 TIGR02508 type_III_yscG type I 49.1 94 0.002 22.1 7.3 51 195-255 48-98 (115)
446 cd08819 CARD_MDA5_2 Caspase ac 48.3 88 0.0019 21.5 6.5 13 344-356 49-61 (88)
447 PF00627 UBA: UBA/TS-N domain; 48.2 46 0.00099 18.2 4.5 33 460-497 5-37 (37)
448 PF09454 Vps23_core: Vps23 cor 47.7 31 0.00068 22.1 3.2 49 401-450 6-54 (65)
449 PF09670 Cas_Cas02710: CRISPR- 47.3 2.4E+02 0.0052 26.2 10.7 56 18-74 141-198 (379)
450 PRK08691 DNA polymerase III su 47.0 3.3E+02 0.0072 27.7 11.2 86 345-434 178-276 (709)
451 PF09670 Cas_Cas02710: CRISPR- 46.6 2.4E+02 0.0053 26.1 11.6 54 89-143 140-197 (379)
452 cd00280 TRFH Telomeric Repeat 46.4 1.6E+02 0.0034 23.8 12.1 38 446-486 119-156 (200)
453 KOG0991 Replication factor C, 46.4 1.8E+02 0.004 24.6 14.4 74 360-436 187-271 (333)
454 KOG0128 RNA-binding protein SA 45.9 3.5E+02 0.0077 27.8 35.0 205 44-254 112-341 (881)
455 PF11838 ERAP1_C: ERAP1-like C 45.7 2.2E+02 0.0049 25.4 19.7 111 167-286 146-262 (324)
456 KOG0292 Vesicle coat complex C 45.2 2.9E+02 0.0063 28.7 10.4 192 21-269 606-797 (1202)
457 PF12069 DUF3549: Protein of u 44.9 2.4E+02 0.0052 25.5 14.1 124 155-289 170-294 (340)
458 KOG4567 GTPase-activating prot 44.7 1.6E+02 0.0034 26.1 7.6 43 388-431 264-306 (370)
459 KOG0991 Replication factor C, 44.6 2E+02 0.0042 24.4 13.2 137 157-331 136-273 (333)
460 PF09868 DUF2095: Uncharacteri 44.6 73 0.0016 23.0 4.7 24 52-75 68-91 (128)
461 COG5108 RPO41 Mitochondrial DN 44.5 1.9E+02 0.0042 28.7 8.9 94 119-212 32-129 (1117)
462 COG5187 RPN7 26S proteasome re 44.3 2.2E+02 0.0048 24.9 10.9 104 360-465 108-219 (412)
463 PF07575 Nucleopor_Nup85: Nup8 44.0 3.4E+02 0.0073 27.0 18.4 386 20-447 124-539 (566)
464 KOG2908 26S proteasome regulat 44.0 2.4E+02 0.0053 25.4 14.8 73 374-446 82-164 (380)
465 PF13929 mRNA_stabil: mRNA sta 42.1 2.4E+02 0.0052 24.8 22.9 64 328-391 199-262 (292)
466 PF13934 ELYS: Nuclear pore co 41.0 2.2E+02 0.0048 24.0 12.3 123 334-472 79-203 (226)
467 PF10475 DUF2450: Protein of u 40.9 2.6E+02 0.0056 24.8 12.5 119 119-249 102-221 (291)
468 KOG0376 Serine-threonine phosp 40.8 70 0.0015 30.0 5.4 106 51-161 10-115 (476)
469 COG4003 Uncharacterized protei 40.6 87 0.0019 21.0 4.3 32 50-82 36-67 (98)
470 COG0735 Fur Fe2+/Zn2+ uptake r 40.6 1.7E+02 0.0036 22.6 6.8 59 69-128 10-68 (145)
471 KOG3364 Membrane protein invol 40.1 1.7E+02 0.0036 22.3 9.4 20 337-356 77-96 (149)
472 smart00544 MA3 Domain in DAP-5 39.2 1.5E+02 0.0032 21.5 11.6 23 120-142 7-29 (113)
473 COG4259 Uncharacterized protei 39.0 1.4E+02 0.003 21.1 6.8 60 419-480 53-112 (121)
474 PRK14951 DNA polymerase III su 38.6 4.3E+02 0.0092 26.6 10.7 85 346-434 184-281 (618)
475 KOG1839 Uncharacterized protei 38.2 5.8E+02 0.012 28.0 12.7 158 16-176 940-1124(1236)
476 COG4976 Predicted methyltransf 37.8 93 0.002 26.1 5.1 60 17-80 4-63 (287)
477 COG5159 RPN6 26S proteasome re 37.7 2.8E+02 0.0061 24.3 18.4 56 157-212 9-71 (421)
478 KOG2297 Predicted translation 37.5 2.9E+02 0.0064 24.5 16.3 16 440-455 323-338 (412)
479 PF09868 DUF2095: Uncharacteri 37.5 1.5E+02 0.0032 21.5 5.4 36 157-193 67-102 (128)
480 PRK13184 pknD serine/threonine 37.4 5.4E+02 0.012 27.5 29.9 95 12-108 479-580 (932)
481 PF05944 Phage_term_smal: Phag 37.4 1.3E+02 0.0027 22.8 5.5 34 227-260 50-83 (132)
482 PRK07003 DNA polymerase III su 37.2 5E+02 0.011 27.0 11.2 86 346-434 179-276 (830)
483 PF02607 B12-binding_2: B12 bi 37.1 45 0.00097 22.2 3.0 52 441-492 1-55 (79)
484 KOG2168 Cullins [Cell cycle co 36.8 5E+02 0.011 26.9 15.7 326 85-467 330-664 (835)
485 PF02184 HAT: HAT (Half-A-TPR) 36.6 71 0.0015 17.0 3.5 21 419-441 3-23 (32)
486 smart00777 Mad3_BUB1_I Mad3/BU 36.3 1.8E+02 0.004 21.7 8.0 42 421-462 81-123 (125)
487 PRK06645 DNA polymerase III su 36.2 4.2E+02 0.0091 25.9 10.4 87 382-471 188-290 (507)
488 KOG4279 Serine/threonine prote 36.2 4.9E+02 0.011 26.6 16.5 84 203-290 180-272 (1226)
489 PF00244 14-3-3: 14-3-3 protei 35.4 2.8E+02 0.0061 23.6 13.3 57 50-106 6-63 (236)
490 PF10366 Vps39_1: Vacuolar sor 35.3 1.7E+02 0.0037 21.1 7.5 27 440-466 41-67 (108)
491 cd07153 Fur_like Ferric uptake 34.8 99 0.0022 22.5 4.7 36 165-200 14-49 (116)
492 PF07678 A2M_comp: A-macroglob 34.7 2.9E+02 0.0064 23.6 9.5 152 99-254 33-221 (246)
493 PRK13342 recombination factor 34.4 4E+02 0.0087 25.1 18.0 32 164-195 243-274 (413)
494 PRK14958 DNA polymerase III su 34.4 4.5E+02 0.0098 25.7 11.7 86 347-436 180-278 (509)
495 cd00194 UBA Ubiquitin Associat 34.2 82 0.0018 17.1 4.6 33 460-497 4-36 (38)
496 PF14669 Asp_Glu_race_2: Putat 34.0 2.6E+02 0.0057 22.8 16.4 24 404-427 182-205 (233)
497 PF04910 Tcf25: Transcriptiona 33.9 3.8E+02 0.0083 24.7 19.9 54 303-356 110-164 (360)
498 PF04190 DUF410: Protein of un 33.7 3.2E+02 0.0069 23.7 17.2 27 150-176 89-115 (260)
499 PF04097 Nic96: Nup93/Nic96; 33.4 5.2E+02 0.011 26.1 23.9 44 155-199 115-158 (613)
500 smart00638 LPD_N Lipoprotein N 33.4 5E+02 0.011 25.9 25.1 62 115-182 310-371 (574)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-70 Score=539.12 Aligned_cols=484 Identities=17% Similarity=0.201 Sum_probs=387.7
Q ss_pred CCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHH
Q 043204 4 RWPRLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVF 83 (504)
Q Consensus 4 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (504)
..++...|..++..+.+.|++++|+++|++|.+.+ -+.++..+++.++..|.+.|..++|..+|+.|.. ||..+|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~g-vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRG-LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 34566678888888888999999999999998872 1345666777778888888888888888887764 788888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhh
Q 043204 84 ATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQ 163 (504)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (504)
+.++.+|++.|+++.|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|... ++.||..+|+.||.+|++
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888754 677888888888888888
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh--CCCCcCHHHHHHHHHHHHhcCch
Q 043204 164 CRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQ--KGSGEDIVIYRTLLFALCDQGKI 241 (504)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~ 241 (504)
.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++| .. .|+.||..+|++++.+|++.|++
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM----~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM----KAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 8888888888888888888888888888888888888888888888888 43 56788888888888888888888
Q ss_pred hHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 043204 242 QDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDE 321 (504)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (504)
++|.++|++|.+.++.|+ ...+..++..|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++
T Consensus 596 deA~elf~~M~e~gi~p~-~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGT-PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888888877644 4445555777778888888888888888888888888888888888888888888888888
Q ss_pred HHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC
Q 043204 322 MRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVA 401 (504)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 401 (504)
|.+.|+.|+..+|+++|.+|++.|++++|.++|++ |...|+.||..+|+.+|.+|++.|++++|.++|++|.+. |+.|
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e-M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~P 752 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED-IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCP 752 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCC
Confidence 88888888888888888888888888888888887 777778888888888888888888888888888888777 8888
Q ss_pred chhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHc----c-------------------CCHHHHH
Q 043204 402 NGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCS----I-------------------GKQYEAV 458 (504)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~ 458 (504)
|..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 8888888888888888888888888888888888888888888765432 1 1235688
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHhh
Q 043204 459 MWLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQLS 501 (504)
Q Consensus 459 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 501 (504)
.+|++|.+.|+.||..||+.++.+++..++ .+.+..+++.|.
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~ 874 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLG 874 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhccccc-HHHHHHHHHHhc
Confidence 888888888888888888888877666655 777777776664
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-70 Score=537.01 Aligned_cols=482 Identities=17% Similarity=0.179 Sum_probs=453.2
Q ss_pred CCCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHH
Q 043204 6 PRLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFAT 85 (504)
Q Consensus 6 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (504)
|+...++.++..|.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tyns 477 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTT 477 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4555677788899999999999999998864 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcC
Q 043204 86 AIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCR 165 (504)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (504)
+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|... ++.||..+|+.||.+|++.|
T Consensus 478 LI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999865 78999999999999999999
Q ss_pred CHHHHHHHHHHhhh--CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhH
Q 043204 166 RSDLALHVFQEMDF--QGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQD 243 (504)
Q Consensus 166 ~~~~a~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 243 (504)
++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.| .+.|+.|+..+|+.++.+|++.|++++
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M----~e~gi~p~~~tynsLI~ay~k~G~~de 632 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI----HEYNIKGTPEVYTIAVNSCSQKGDWDF 632 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHcCCCCChHHHHHHHHHHHhcCCHHH
Confidence 99999999999986 688999999999999999999999999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043204 244 AMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMR 323 (504)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (504)
|.++|++|.+.|+.|+ ..++..++..|.+.|+++.|.+++++|.+.|..|+..+|+.+|.+|++.|++++|.++|++|.
T Consensus 633 Al~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 633 ALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999876 455666688999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCch
Q 043204 324 TKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANG 403 (504)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 403 (504)
+.|+.||..+|+.||.+|++.|++++|.++|++ |...|+.||..+|+.++.+|++.|+++.|.+++++|.+. |+.||.
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e-M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~ 789 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSE-MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNL 789 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCH
Confidence 999999999999999999999999999999998 888999999999999999999999999999999999998 999999
Q ss_pred hhHHHHHHHHhh----c-------------------CcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHH
Q 043204 404 ETYGILVDGLCR----D-------------------GRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMW 460 (504)
Q Consensus 404 ~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 460 (504)
.+|++++..|.+ + +..++|..+|++|.+.|+.||..||+.++.++.+.+....+..+
T Consensus 790 ~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m 869 (1060)
T PLN03218 790 VMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRL 869 (1060)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHH
Confidence 999999976542 1 12467999999999999999999999999888899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHhhcCC
Q 043204 461 LEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQLSSCS 504 (504)
Q Consensus 461 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 504 (504)
++.|...+..|+..+|++++.+++.. .++|..++++|.+.|
T Consensus 870 ~~~m~~~~~~~~~~~y~~Li~g~~~~---~~~A~~l~~em~~~G 910 (1060)
T PLN03218 870 IENLGISADSQKQSNLSTLVDGFGEY---DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHhccCCCCcchhhhHHHHHhhccC---hHHHHHHHHHHHHcC
Confidence 99998888899999999999986432 468999999999876
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-67 Score=525.12 Aligned_cols=472 Identities=14% Similarity=0.130 Sum_probs=284.3
Q ss_pred CCCCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHH
Q 043204 5 WPRLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFA 84 (504)
Q Consensus 5 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
.||..+||.++.+|.+.|++++|+++|++|... |+.||..+|+.++.+|+..+++..+.+++..|.+.|+.||..+++
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~--g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 226 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA--GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHh
Confidence 355666666666666666666666666666555 555666666555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhc
Q 043204 85 TAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQC 164 (504)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 164 (504)
.++.+|++.|+++.|.++|++|.+ |+..+|+++|.+|++.|++++|..+|++|... ++.||..+|+.++.+|++.
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~ 301 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELL 301 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhc
Confidence 555555555555555555555542 33455555555555555555555555555533 4555555555555555555
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHH
Q 043204 165 RRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDA 244 (504)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 244 (504)
|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++| . .||..+|++++.+|++.|++++|
T Consensus 302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~----~~d~~s~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM----E----TKDAVSWTAMISGYEKNGLPDKA 373 (857)
T ss_pred CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC----C----CCCeeeHHHHHHHHHhCCCHHHH
Confidence 555555555555555555555556666666666666666666655555 2 34555566666666666666666
Q ss_pred HHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043204 245 MQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRT 324 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (504)
.++|++|.+.|+.|+..++..+ +..|.+.|+++.|.++++.+.+.|..|+..+++.++.+|++.|++++|.++|++|.+
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~l-l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASV-LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHH-HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 6666666555555444333333 345555566666666666666655555556666666666666666666665555543
Q ss_pred CCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC-----
Q 043204 325 KGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGC----- 399 (504)
Q Consensus 325 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 399 (504)
+|..+|+.++.+|++.|+.++|..+|++ |.. ++.||..||+.++.+|++.|+.+.+.+++..+.+. |+
T Consensus 453 ----~d~vs~~~mi~~~~~~g~~~eA~~lf~~-m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~ 525 (857)
T PLN03077 453 ----KDVISWTSIIAGLRLNNRCFEALIFFRQ-MLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGF 525 (857)
T ss_pred ----CCeeeHHHHHHHHHHCCCHHHHHHHHHH-HHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccce
Confidence 3455555555555555555555555555 332 35566666655555555444444444444444433 33
Q ss_pred -------------------------CCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCH
Q 043204 400 -------------------------VANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQ 454 (504)
Q Consensus 400 -------------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 454 (504)
.||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 3455566677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 043204 455 YEAVMWLEEMI-SQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQL 500 (504)
Q Consensus 455 ~~a~~~~~~~~-~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 500 (504)
++|.++|+.|. +.|+.|+..+|++++.+|++.|. +++|.+++++|
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~-~~eA~~~~~~m 651 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK-LTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC-HHHHHHHHHHC
Confidence 77777777777 56777777777777777777766 77777777776
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-67 Score=525.79 Aligned_cols=466 Identities=16% Similarity=0.149 Sum_probs=438.6
Q ss_pred CCCCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHH
Q 043204 5 WPRLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFA 84 (504)
Q Consensus 5 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
.|+..++|.|+..|++.|++++|.++|++|.+. |..+||++|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~------d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRR------DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCC------CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 378889999999999999999999999999753 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhc
Q 043204 85 TAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQC 164 (504)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 164 (504)
.++.+|.+.|+.+.|.+++..|.+.|+.|+..+|++|+.+|++.|++++|.++|++|. .||..+||++|.+|++.
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKN 367 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999985 46888999999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHH
Q 043204 165 RRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDA 244 (504)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 244 (504)
|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+ .+.|..|+..+|++|+.+|++.|++++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~----~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA----ERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH----HHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043204 245 MQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRT 324 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (504)
.++|++|.+. +...++.++..+...|+.++|..+|++|.. +..||..+|+.++.+|++.|+++.+.+++..+.+
T Consensus 444 ~~vf~~m~~~-----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 444 LEVFHNIPEK-----DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred HHHHHhCCCC-----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 9999998643 345666778888999999999999999986 5899999999999999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchh
Q 043204 325 KGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGE 404 (504)
Q Consensus 325 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 404 (504)
.|+.++..++++|+++|++.|++++|.++|+. + .||..+|+.+|.+|++.|+.++|.++|++|.+. |+.||..
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~-~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-g~~Pd~~ 590 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-H-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES-GVNPDEV 590 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHh-c-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCcc
Confidence 99999999999999999999999999999987 4 589999999999999999999999999999988 9999999
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHHH-hcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043204 405 TYGILVDGLCRDGRFLEASRVLEEML-IRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASV 483 (504)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 483 (504)
||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++| +++||..+|.+|+.+|
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNAC 667 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999 6799999999999999999999999999999999 5899999999999984
Q ss_pred hcCCCchhHHHHHHHHhhc
Q 043204 484 CCNTADLNVCRKTLEQLSS 502 (504)
Q Consensus 484 ~~~~~~~~~a~~~~~~~~~ 502 (504)
+.+++.+.++...+++.+
T Consensus 668 -~~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 668 -RIHRHVELGELAAQHIFE 685 (857)
T ss_pred -HHcCChHHHHHHHHHHHh
Confidence 555558888877777654
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-66 Score=510.13 Aligned_cols=472 Identities=15% Similarity=0.160 Sum_probs=445.2
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATA 86 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+..+|+.++..|.+.|++++|+++|++|.... +..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~-~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGC-PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 44589999999999999999999999998753 46799999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCC
Q 043204 87 IRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRR 166 (504)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 166 (504)
+.+|++.|+++.|.++|++|.+ |+..+|+.++.+|++.|++++|.++|++|... +..|+..+|+.++.+|++.|+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999975 67889999999999999999999999999865 789999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHH
Q 043204 167 SDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQ 246 (504)
Q Consensus 167 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (504)
.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.| . .+|..+|++++.+|++.|++++|.+
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~----~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM----P----EKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC----C----CCChhHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999998 3 4689999999999999999999999
Q ss_pred HHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043204 247 ILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKG 326 (504)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (504)
+|++|.+.|+.|+.. ++..++..|.+.|+++.|.+++..+.+.|..||..+++.++.+|++.|++++|.++|++|.+
T Consensus 312 lf~~M~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 312 LYYEMRDSGVSIDQF-TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 999999999886655 56666899999999999999999999999999999999999999999999999999999965
Q ss_pred CCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhH
Q 043204 327 FWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETY 406 (504)
Q Consensus 327 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 406 (504)
||..+|++||.+|++.|+.++|.++|++ |...|+.||..||+.++.+|++.|+.++|.++|+.|.+.+++.|+..+|
T Consensus 389 --~d~~t~n~lI~~y~~~G~~~~A~~lf~~-M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 389 --KNLISWNALIAGYGNHGRGTKAVEMFER-MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred --CCeeeHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 6999999999999999999999999999 8889999999999999999999999999999999998866999999999
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 043204 407 GILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPD-ISVWSSLVASVCC 485 (504)
Q Consensus 407 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~ 485 (504)
++++++|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|.++++++. +..|+ ..+|..++..|++
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNS 540 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHh
Confidence 99999999999999999999876 567999999999999999999999999999998 55675 5799999999999
Q ss_pred CCCchhHHHHHHHHhhcCC
Q 043204 486 NTADLNVCRKTLEQLSSCS 504 (504)
Q Consensus 486 ~~~~~~~a~~~~~~~~~~~ 504 (504)
.|+ +++|.+++++|.++|
T Consensus 541 ~G~-~~~A~~v~~~m~~~g 558 (697)
T PLN03081 541 SGR-QAEAAKVVETLKRKG 558 (697)
T ss_pred CCC-HHHHHHHHHHHHHcC
Confidence 988 999999999999875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-62 Score=481.14 Aligned_cols=436 Identities=17% Similarity=0.174 Sum_probs=414.5
Q ss_pred cchhcHHHHHHHHhccCChhHHHHHHHHhhcCC-CCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHH
Q 043204 43 HNGPVYASMIGILSESNRITEMKEVIDQMKGDS-CECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTL 121 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
++..+|+.+|..+.+.|++++|.++|+.|...+ +.||..+|+.++.+|.+.++++.|.+++..|.+.|+.|+..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 355689999999999999999999999998764 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC
Q 043204 122 LKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRR 201 (504)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 201 (504)
+.+|++.|+++.|.++|++|. .||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 999999999999999999995 368999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHH
Q 043204 202 LNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAK 281 (504)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 281 (504)
.+.+.+++..+ .+.|..||..+|++|+.+|++.|++++|.++|++|.. .+...+..++..|.+.|+.++|.
T Consensus 240 ~~~~~~l~~~~----~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 240 ARAGQQLHCCV----LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred HHHHHHHHHHH----HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHH
Confidence 99999999988 8999999999999999999999999999999999853 45667778899999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 043204 282 SLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKG 361 (504)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 361 (504)
++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..++++|+++|++.|++++|.++|++ |.
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~-m~-- 387 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR-MP-- 387 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh-CC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 65
Q ss_pred CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHh-cCcCCCcch
Q 043204 362 TFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLI-RSYWPCVET 440 (504)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~ 440 (504)
.||..+|+.+|.+|++.|+.++|.++|++|.+. |+.||..||++++.+|.+.|++++|.++|+.|.+ .|+.|+..+
T Consensus 388 --~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 388 --RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred --CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc
Confidence 479999999999999999999999999999998 9999999999999999999999999999999986 599999999
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHhhc
Q 043204 441 YNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQLSS 502 (504)
Q Consensus 441 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 502 (504)
|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|+..++ ++.|..+++++.+
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~-~~~a~~~~~~l~~ 522 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN-LELGRLAAEKLYG 522 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHhC
Confidence 999999999999999999999887 689999999999999666665 9999999998865
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.3e-31 Score=274.48 Aligned_cols=466 Identities=14% Similarity=0.043 Sum_probs=366.1
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
...++..+.+.|++++|+.+++.+....|+ +..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 509 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKKQPD---NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARID 509 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHH
Confidence 344556667777777777777777766554 66677778888888888888888888877765 55566677777888
Q ss_pred HhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHH
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLA 170 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 170 (504)
...|++++|.+.|+.+.+.+ +.+..++..+...+.+.|+.++|...++++.... +.+...+..++..|...|++++|
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHH
Confidence 88888888888888877655 3346677778888888888888888888876543 33455667788888888888888
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 043204 171 LHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEK 250 (504)
Q Consensus 171 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (504)
.++++.+.+.. +.+..+|..+..++...|++++|...|+++ .+.. +.+...+..+..++...|++++|...+++
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKL----LALQ-PDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887653 346778888888888888888888888887 3332 23566777888888888888888888888
Q ss_pred HHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcc
Q 043204 251 ILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPS 330 (504)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (504)
+.+. .|++......+...+...|+++.|..+++.+.+.... +...+..+...+...|++++|...|+.+...+ |+
T Consensus 661 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~ 735 (899)
T TIGR02917 661 ALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PS 735 (899)
T ss_pred HHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CC
Confidence 8765 4566666666777788888899999988888877543 56677777788888899999999999988865 44
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 043204 331 LVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILV 410 (504)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 410 (504)
..++..+..++.+.|++++|.+.+++.+... +.+...+..+...|...|+.++|.++|+++.+. .+++..+++.+.
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~ 811 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLA 811 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4677778888999999999999998855543 456778888888999999999999999999875 345677888999
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCch
Q 043204 411 DGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADL 490 (504)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 490 (504)
..+...|+ .+|...++++.+.. +-+..++..+...+...|++++|.++++++.+.+. .+..++..+..+++..|+ .
T Consensus 812 ~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~-~ 887 (899)
T TIGR02917 812 WLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGR-K 887 (899)
T ss_pred HHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCC-H
Confidence 99999999 88999999988763 34566777888899999999999999999998653 378888899999888888 9
Q ss_pred hHHHHHHHHhhc
Q 043204 491 NVCRKTLEQLSS 502 (504)
Q Consensus 491 ~~a~~~~~~~~~ 502 (504)
++|.+++++|++
T Consensus 888 ~~A~~~~~~~~~ 899 (899)
T TIGR02917 888 AEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHhC
Confidence 999999999864
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.1e-30 Score=265.20 Aligned_cols=465 Identities=13% Similarity=0.023 Sum_probs=259.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYAR 92 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
.+...+.+.|++++|...++.+.+..|. +...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+..
T Consensus 334 ~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLDPD---DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 3444445555555555555555544333 44455555555555555555555555555443 3334445555555555
Q ss_pred cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHH
Q 043204 93 AGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALH 172 (504)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 172 (504)
.|++++|.+.|+.+.+.+... ......++..+.+.|++++|..+++.+... .+++..++..+...+...|++++|.+
T Consensus 410 ~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDPEL-GRADLLLILSYLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred CCChHHHHHHHHHHHhhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 555555555555554433221 223334445555555555555555555433 22334456666666666666666666
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 043204 173 VFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKIL 252 (504)
Q Consensus 173 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 252 (504)
.|+++.+.. +.+...+..+...+...|++++|.+.++++ .... +.+..++..+...+.+.|+.++|..+++++.
T Consensus 487 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 487 AFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKV----LTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665543 223445555666666666666666666666 3322 2245566666666666666666666666665
Q ss_pred HcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchh
Q 043204 253 RKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLV 332 (504)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (504)
+.+ |.+......+...+...|+++.|..+++.+..... .+...|..+...+...|++++|...|+++.+... .+..
T Consensus 561 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 636 (899)
T TIGR02917 561 ELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSAL 636 (899)
T ss_pred HhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChH
Confidence 542 33334444455556666666666666666665433 2455666666666666777777777766665432 2455
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 043204 333 MYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDG 412 (504)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 412 (504)
.+..+..++...|++++|...+++++... +.+..++..+...+...|++++|.++++.+.+. .+++...+..+...
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 712 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDL 712 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHH
Confidence 56666666666667777766666633322 334555666666666666666666666666553 23344555556666
Q ss_pred HhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhH
Q 043204 413 LCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLNV 492 (504)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 492 (504)
+...|++++|.+.++.+...+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...+...|+ .++
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~-~~~ 788 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKD-YDK 788 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC-HHH
Confidence 666666666666666666543 444555556666666666666666666665432 2233444444444333333 666
Q ss_pred HHHHHHHhhc
Q 043204 493 CRKTLEQLSS 502 (504)
Q Consensus 493 a~~~~~~~~~ 502 (504)
|..+++++.+
T Consensus 789 A~~~~~~~~~ 798 (899)
T TIGR02917 789 AIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=9.1e-23 Score=210.69 Aligned_cols=476 Identities=12% Similarity=0.001 Sum_probs=308.8
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhc----------------HHHHHHHHhccCChhHHHHHHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPV----------------YASMIGILSESNRITEMKEVIDQ 70 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~ 70 (504)
++..+..++..+.+.|+.++|.+.++++.+..|+ +... ...+...+...|++++|.+.|+.
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~---~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD---SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3444566778888889999999999999888776 3222 23334567888999999999998
Q ss_pred hhcCCCCccHHH-HHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCC--
Q 043204 71 MKGDSCECKDSV-FATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEV-- 147 (504)
Q Consensus 71 ~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-- 147 (504)
+.+.+ +|+... ...........|+.++|++.|+++.+..+ .+...+..+...+...|+.++|+..++++......
T Consensus 138 ~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 138 LFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred HccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 88765 444322 11112222345888899999998887753 34567778888888889999999988877543210
Q ss_pred ---------------cch-HHHH----------------------------------HHHHHHHhhcCCHHHHHHHHHHh
Q 043204 148 ---------------KSR-IQSL----------------------------------NLLMDVLCQCRRSDLALHVFQEM 177 (504)
Q Consensus 148 ---------------~~~-~~~~----------------------------------~~l~~~~~~~~~~~~a~~~~~~~ 177 (504)
.+. ...+ ......+...|++++|+..|++.
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000 0000 01134456778999999999988
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCc-CHHHH------------HHHHHHHHhcCchhHH
Q 043204 178 DFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGE-DIVIY------------RTLLFALCDQGKIQDA 244 (504)
Q Consensus 178 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~g~~~~a 244 (504)
.+... .+...+..+..++.+.|++++|...|++. .+..... ....+ ......+.+.|++++|
T Consensus 296 L~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~A----l~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA 370 (1157)
T PRK11447 296 VRANP-KDSEALGALGQAYSQQGDRARAVAQFEKA----LALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA 370 (1157)
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence 87642 26778888888899999999999999887 3332221 11111 1224466788889999
Q ss_pred HHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHH-----------------------
Q 043204 245 MQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSA----------------------- 301 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------------- 301 (504)
...|+++++. .|.+......+..++...|++++|++.|+++++.... +...+..
T Consensus 371 ~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~ 447 (1157)
T PRK11447 371 ERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSAS 447 (1157)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 9999988876 4555566666778888889999999999888866433 2222221
Q ss_pred -------------------HHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 043204 302 -------------------MAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGT 362 (504)
Q Consensus 302 -------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 362 (504)
+...+...|++++|+..|++..+..+. +...+..+...|.+.|++++|...+++++....
T Consensus 448 ~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 448 QRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 122334568888888888888876533 566677788888888999999888888554432
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-------------------------------------c-CCCCchh
Q 043204 363 FVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQ-------------------------------------V-GCVANGE 404 (504)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------~-~~~p~~~ 404 (504)
- +...+..+...+...++.++|...++.+... . ..+.+..
T Consensus 527 ~--~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~ 604 (1157)
T PRK11447 527 N--DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTR 604 (1157)
T ss_pred C--CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCch
Confidence 2 2222222222233344444444433332110 0 0123344
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 043204 405 TYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDI-SVWSSLVASV 483 (504)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~ 483 (504)
.+..+...+.+.|++++|.+.|++..+.. +.+...+..++..+...|++++|++.+++..+. .|+. ..+..+..++
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAW 681 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHH
Confidence 55667777778888888888888887753 345667777777888888888888888877643 4443 3344445554
Q ss_pred hcCCCchhHHHHHHHHhhc
Q 043204 484 CCNTADLNVCRKTLEQLSS 502 (504)
Q Consensus 484 ~~~~~~~~~a~~~~~~~~~ 502 (504)
...++ +++|.++++++++
T Consensus 682 ~~~g~-~~eA~~~~~~al~ 699 (1157)
T PRK11447 682 AALGD-TAAAQRTFNRLIP 699 (1157)
T ss_pred HhCCC-HHHHHHHHHHHhh
Confidence 44444 8888888887754
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=2.9e-22 Score=206.98 Aligned_cols=466 Identities=14% Similarity=0.059 Sum_probs=301.3
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhc-HHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 12 TYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPV-YASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 12 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
..+...+...|++++|++.|+.+.+..|. +... ...+.......|+.++|++.|+++.+.. +.+...+..+...+
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p~---~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAPP---ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCCC---ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44556677778888888888887776443 2211 1111122234577777888887777765 55666677777777
Q ss_pred HhcCChhHHHHHHHHhhhCCCC--------------------------------ccHHH-------H-------------
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCV--------------------------------NWTQS-------F------------- 118 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~-------~------------- 118 (504)
...|++++|+..|+++.+.... |+... +
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 7777777777777766432110 00000 0
Q ss_pred -HHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCC-CHhhHH------
Q 043204 119 -NTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYP-DRESYH------ 190 (504)
Q Consensus 119 -~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~------ 190 (504)
......+...|++++|+..|++..... +.+...+..+..++.+.|++++|+..|++..+..... +...+.
T Consensus 272 ~~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 272 ARAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 011334566788888888888776542 2245566777777888888888888888777653211 111111
Q ss_pred ------HHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhh
Q 043204 191 ------ILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRH 264 (504)
Q Consensus 191 ------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 264 (504)
.....+.+.|++++|...|+++ ..... .+...+..+..++...|++++|++.|+++.+.. |......
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~A----l~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~ 422 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQA----RQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAV 422 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHH
Confidence 1233456778888888888777 33322 245566677777888888888888888777653 2222111
Q ss_pred hh------------------------------------------hccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 043204 265 RI------------------------------------------DLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAM 302 (504)
Q Consensus 265 ~~------------------------------------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 302 (504)
.. ....+...|++++|.+.+++.++..+. +...+..+
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 10 112234568888888888888876544 45566667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHH--------------------------------------------H
Q 043204 303 AIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAK--------------------------------------------L 338 (504)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------------~ 338 (504)
...+.+.|++++|...++++.+..+. +...+..+ .
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 77788888888888888888765322 33222222 2
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCc
Q 043204 339 AALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGR 418 (504)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 418 (504)
..+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++.+. -+.+...+..++..|...|+
T Consensus 581 ~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 334444555555554441 2345556777888899999999999999999875 23356788999999999999
Q ss_pred HHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHhcCCCchhHH
Q 043204 419 FLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKL-P----DISVWSSLVASVCCNTADLNVC 493 (504)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p----~~~~~~~ll~~~~~~~~~~~~a 493 (504)
.++|.+.++...+.. +.+...+..+..++...|++++|.++++++....-. | +...+..+... ....|+.++|
T Consensus 653 ~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~-~~~~G~~~~A 730 (1157)
T PRK11447 653 LAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF-EAQTGQPQQA 730 (1157)
T ss_pred HHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH-HHHcCCHHHH
Confidence 999999999887753 234556677888899999999999999999864211 2 11344444554 4444459999
Q ss_pred HHHHHHhhc
Q 043204 494 RKTLEQLSS 502 (504)
Q Consensus 494 ~~~~~~~~~ 502 (504)
...+++.+.
T Consensus 731 ~~~y~~Al~ 739 (1157)
T PRK11447 731 LETYKDAMV 739 (1157)
T ss_pred HHHHHHHHh
Confidence 999998763
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.8e-22 Score=177.92 Aligned_cols=439 Identities=14% Similarity=0.088 Sum_probs=355.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYAR 92 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
.|..-..+.|++.+|++--...-+.+|. +......+-..+.+..+.+....--....+.. +.-..+|..+.+.+-.
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t---~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPT---NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCC---cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3455566788899998888777777665 44444444456667777776655544444443 5667889999999999
Q ss_pred cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHH-HHHHHHHhhcCCHHHHH
Q 043204 93 AGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSL-NLLMDVLCQCRRSDLAL 171 (504)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~ 171 (504)
.|+++.|+.+++.+.+... .....|..+..++...|+.+.|...|..... +.|+.... ..+...+-..|+.++|.
T Consensus 129 rg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhH
Confidence 9999999999999998763 3478899999999999999999999988874 34554333 33344455579999999
Q ss_pred HHHHHhhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCchhHHHHHHH
Q 043204 172 HVFQEMDFQGCYPD-RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED-IVIYRTLLFALCDQGKIQDAMQILE 249 (504)
Q Consensus 172 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (504)
..|.+..+. .|. ...|+.|...+-.+|+...|++.|++. .+ +.|+ ...|-.|...|...+.++.|...+.
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA----vk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA----VK--LDPNFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHh----hc--CCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 999888876 343 467888888899999999999999987 33 4444 5688889999999999999999999
Q ss_pred HHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 043204 250 KILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWP 329 (504)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (504)
..... .|.....+..+...|...|+++.|+..+++.++..+. -...|+.+..++-..|++.+|.+.|.+.......
T Consensus 277 rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~- 352 (966)
T KOG4626|consen 277 RALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN- 352 (966)
T ss_pred HHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-
Confidence 88765 6788888888999999999999999999999987554 4678999999999999999999999999987543
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCch-hhHH
Q 043204 330 SLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPT-VRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANG-ETYG 407 (504)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~ 407 (504)
.....+.|...|...|.+++|..+|..++.- .|. ...++.|...|-+.|++++|+..|++.. .+.|+. ..|+
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v---~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~ 426 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALS 426 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHH
Confidence 6678889999999999999999999985553 344 4578899999999999999999999988 568874 5789
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCcCCC-cchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 043204 408 ILVDGLCRDGRFLEASRVLEEMLIRSYWPC-VETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDIS-VWSSLVA 481 (504)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~ 481 (504)
.+...|-..|+.+.|.+.+.+.+..+ |. ....+.|...|-.+|+..+|++-++..+ .++||.+ .+..++.
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNllh 498 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNLLH 498 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHHHH
Confidence 99999999999999999999998854 54 5678889999999999999999999999 5678864 3444443
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.5e-21 Score=180.38 Aligned_cols=313 Identities=15% Similarity=0.099 Sum_probs=242.6
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCcc---HHHHHHHHHHHHh
Q 043204 51 MIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNW---TQSFNTLLKEMVK 127 (504)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~ 127 (504)
....+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445667788999999999998876 55667788888889999999999999998877543222 2467788888999
Q ss_pred cchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCH----hhHHHHHHHHHhcCCHH
Q 043204 128 ESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDR----ESYHILMKGLCNDRRLN 203 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~ 203 (504)
.|++++|..+|+++... .+++..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|+++
T Consensus 120 ~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 120 AGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 99999999999998764 2345678888999999999999999999999876533322 24556777888999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHH
Q 043204 204 EATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSL 283 (504)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 283 (504)
+|...|+++ .+.. +.+...+..+...+.+.|++++|.++++++...+..
T Consensus 198 ~A~~~~~~a----l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------------------------- 246 (389)
T PRK11788 198 AARALLKKA----LAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE-------------------------- 246 (389)
T ss_pred HHHHHHHHH----HhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh--------------------------
Confidence 999999988 3332 224667788889999999999999999998875211
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 043204 284 INEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTF 363 (504)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 363 (504)
.....++.+..+|...|++++|...++++.+.. |+...+..++..+.+.|++++|..++++++..
T Consensus 247 ----------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--- 311 (389)
T PRK11788 247 ----------YLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--- 311 (389)
T ss_pred ----------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---
Confidence 123456778888999999999999999988864 55566688899999999999999999985554
Q ss_pred CccHHHHHHHHHHHHh---cCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcH
Q 043204 364 VPTVRVYNILLKGLCD---AGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRF 419 (504)
Q Consensus 364 ~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 419 (504)
.|+..++..++..+.. .|+.+++..+++++.++ ++.|++. ..|.++|-.
T Consensus 312 ~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 312 HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR------YRCRNCGFT 363 (389)
T ss_pred CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC------EECCCCCCC
Confidence 5888888888877664 55889999999999987 7777766 235555544
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=3.8e-21 Score=177.72 Aligned_cols=301 Identities=13% Similarity=0.103 Sum_probs=151.5
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcc--hHHHHHHHHHHHhhcCC
Q 043204 89 TYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKS--RIQSLNLLMDVLCQCRR 166 (504)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 166 (504)
.+...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+...+...+ ....+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 44556667777777777766542 2344566666666666666666666666654322211 12345555666666666
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC----HHHHHHHHHHHHhcCchh
Q 043204 167 SDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED----IVIYRTLLFALCDQGKIQ 242 (504)
Q Consensus 167 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 242 (504)
+++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+ ...+..+. ...+..+...+.+.|+++
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERL----EKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHH----HHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 666666666665432 234455566666666666666666666655 33222211 112334444455555555
Q ss_pred HHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043204 243 DAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEM 322 (504)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 322 (504)
+|...|+++.+... .+...+..+...+.+.|++++|.++++++
T Consensus 198 ~A~~~~~~al~~~p-------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 198 AARALLKKALAADP-------------------------------------QCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHHHHHHHhHCc-------------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555544311 02233344445555555555555555555
Q ss_pred HHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc
Q 043204 323 RTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVAN 402 (504)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 402 (504)
.+.+......+++.++.+|...|++++|...+++ +... .|+...+..+...+.+.|++++|..+++++.+. .|+
T Consensus 241 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~-~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~ 314 (389)
T PRK11788 241 EEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR-ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPS 314 (389)
T ss_pred HHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcC
Confidence 5433222233444555555555555555555554 2221 233333444555555555555555555554432 344
Q ss_pred hhhHHHHHHHHhh---cCcHHHHHHHHHHHHhcCcCCCc
Q 043204 403 GETYGILVDGLCR---DGRFLEASRVLEEMLIRSYWPCV 438 (504)
Q Consensus 403 ~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 438 (504)
...+..++..+.. .|+..++..+++++.+.++.|++
T Consensus 315 ~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 315 LRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 4445444444432 23455555555555554444443
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.5e-19 Score=175.52 Aligned_cols=426 Identities=14% Similarity=0.049 Sum_probs=282.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYAR 92 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
.....+.+.|++++|+..|+++.+..| +...|..+..+|...|++++|++.++...+.. +.+...+..+..+|..
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p----~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKP----DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456677788999999999999887654 56678888889999999999999999988876 5667788888999999
Q ss_pred cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHH
Q 043204 93 AGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALH 172 (504)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 172 (504)
.|++++|+.-|......+...+.. ...++..+........+...++. .+...|. +..+.. |......+....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~---~~~~~~~---~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILET---KPENLPS---VTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhc---CCCCCCC---HHHHHH-HHHHccCCcchh
Confidence 999999988887665443222221 11222211111112222222221 1111122 111211 211111111111
Q ss_pred HHHHhhhCCCCCCH-hhHHHHHHH---HHhcCCHHHHHHHHHHHHHHHhhCC-CCc-CHHHHHHHHHHHHhcCchhHHHH
Q 043204 173 VFQEMDFQGCYPDR-ESYHILMKG---LCNDRRLNEATHLLYSMFWRISQKG-SGE-DIVIYRTLLFALCDQGKIQDAMQ 246 (504)
Q Consensus 173 ~~~~~~~~~~~p~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~ 246 (504)
-++...+. .+.. ..+..+... ....+++++|.+.|+.. ...+ ..| ....+..+...+...|++++|+.
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a----l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKA----LDLGKLGEKEAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHH----HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 11111111 1111 111111111 12346788888888877 4432 223 34567777777888888888888
Q ss_pred HHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043204 247 ILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKG 326 (504)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (504)
.+++.+.. .|.....+..+...+...|+++.|...++.+++.... +...+..+...+...|++++|...|++..+..
T Consensus 353 ~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 353 DLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 88888765 3455555556666677788888888888888776543 56778888888888999999999999998875
Q ss_pred CCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCch-h-
Q 043204 327 FWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANG-E- 404 (504)
Q Consensus 327 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~- 404 (504)
+. +...+..+...+.+.|++++|+..|++.+... +.+...++.+..++...|++++|.+.|++..+. .|+. .
T Consensus 430 P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~ 503 (615)
T TIGR00990 430 PD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPM 503 (615)
T ss_pred cc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccc
Confidence 33 56777788888999999999999999866543 345667888888999999999999999998754 2321 1
Q ss_pred ------hHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043204 405 ------TYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQ 467 (504)
Q Consensus 405 ------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (504)
.++.....+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|++.|++..+.
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 11222223444689999999999988764 233456888899999999999999999998854
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=2.5e-19 Score=173.32 Aligned_cols=296 Identities=13% Similarity=0.049 Sum_probs=181.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYAR 92 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
.++..+.+.|++++|+.+++......|. +...+..++.+....|++++|.+.|+++.+.. |.+...+..+...+..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3456666778888888888888777665 56666666667777788888888888877766 5566677777777778
Q ss_pred cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHH
Q 043204 93 AGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALH 172 (504)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 172 (504)
.|++++|...|+...+.. +.+...+..+...+...|++++|...++.+....+..++ .+..+ ..+...|++++|..
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~--a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD--MIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH--HHHHH-HHHHHcCCHHHHHH
Confidence 888888888888777654 233556677777777888888888777766544222222 22222 23667788888888
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhH----HHHHH
Q 043204 173 VFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQD----AMQIL 248 (504)
Q Consensus 173 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~ 248 (504)
.++.+.+....++...+..+..++...|++++|...++++ .... +.+...+..+...+...|++++ |...|
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a----l~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA----LARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH----HhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 8777766533334444455556677778888888877777 3332 2246666777777777777764 67777
Q ss_pred HHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043204 249 EKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRT 324 (504)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (504)
++..+. .|+.......+...+...|+++.|...++++....+. +...+..+...+.+.|++++|...|+.+..
T Consensus 274 ~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 274 RHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777664 3333333333344444444444444444444433222 222333333344444444444444444443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=4.7e-19 Score=172.19 Aligned_cols=427 Identities=11% Similarity=-0.002 Sum_probs=294.7
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHh
Q 043204 48 YASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVK 127 (504)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 127 (504)
+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++...+.+. .+..++..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 446667788889999999999988876 46777888888889999999999999998887753 346678888888999
Q ss_pred cchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043204 128 ESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATH 207 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 207 (504)
.|++++|+.-|.......+..+.. ...++..+.. ..+........+.. +++...+..+.. +...........
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~--~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ--SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH--HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 999999988887665443332211 1112221111 12222222222221 122222322222 222111111111
Q ss_pred HHHHHHHHHhhCCCCcC-HHHHHHHHHH---HHhcCchhHHHHHHHHHHHcC-CCCCcchhhhhhccccCCCCChHHHHH
Q 043204 208 LLYSMFWRISQKGSGED-IVIYRTLLFA---LCDQGKIQDAMQILEKILRKG-LKAPKSRRHRIDLCPCNDGEDIEGAKS 282 (504)
Q Consensus 208 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~ 282 (504)
-+... .. ..+. ...+..+... ....+++++|.+.|+.....+ ..|.....+..+..++...|+++.|..
T Consensus 279 ~~~~~----~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 279 GLEDS----NE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred hhhcc----cc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 11111 00 1111 0111111111 123468999999999998865 345555666777788889999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 043204 283 LINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGT 362 (504)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 362 (504)
.++..++..+. ....|..+...+...|++++|...|++..+.... +...+..+...+...|++++|...|++++...
T Consensus 353 ~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~- 429 (615)
T TIGR00990 353 DLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD- 429 (615)
T ss_pred HHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 99999987543 4567778888888999999999999999887533 67889999999999999999999999966553
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCc-ch-
Q 043204 363 FVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCV-ET- 440 (504)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~- 440 (504)
+.+...+..+..++.+.|++++|+..+++..+. .+.+...++.+..++...|++++|.+.|++..+.. |+. ..
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~ 504 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMY 504 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--Ccccccc
Confidence 345667888888999999999999999999864 33356788899999999999999999999998863 321 11
Q ss_pred ------HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCCchhHHHHHHHHhhc
Q 043204 441 ------YNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDI-SVWSSLVASVCCNTADLNVCRKTLEQLSS 502 (504)
Q Consensus 441 ------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 502 (504)
++.....+...|++++|.+++++..+. .|+. ..+..+...+...|+ +++|.+++++..+
T Consensus 505 ~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~-~~eAi~~~e~A~~ 570 (615)
T TIGR00990 505 MNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGD-VDEALKLFERAAE 570 (615)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHH
Confidence 112222334469999999999999864 4554 467777887777766 9999999998754
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=2e-18 Score=170.88 Aligned_cols=184 Identities=12% Similarity=-0.022 Sum_probs=106.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHH
Q 043204 308 NEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAV 387 (504)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 387 (504)
..|++++|...|+++... +|+...+..+...+.+.|+.++|...+++.+... +++...+..+.......|++++|.
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHH
Confidence 446666666666555433 2223334444555566666666666666533322 122222222333333447777777
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043204 388 MYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQ 467 (504)
Q Consensus 388 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (504)
..+++..+. .|+...+..+..++.+.|+.++|...+++..+.. +.+...+..+..++...|++++|++.+++..+.
T Consensus 597 ~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 597 NDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 777776643 4556667777777777777777777777777653 234455566666777777777777777777753
Q ss_pred CCCCC-HHHHHHHHHHHhcCCCchhHHHHHHHHhhc
Q 043204 468 AKLPD-ISVWSSLVASVCCNTADLNVCRKTLEQLSS 502 (504)
Q Consensus 468 ~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 502 (504)
.|+ ...+..+..++...|+ +++|...+++..+
T Consensus 673 --~P~~~~a~~nLA~al~~lGd-~~eA~~~l~~Al~ 705 (987)
T PRK09782 673 --LPDDPALIRQLAYVNQRLDD-MAATQHYARLVID 705 (987)
T ss_pred --CCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh
Confidence 344 3445555555444444 7777777777654
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=2.2e-20 Score=165.03 Aligned_cols=407 Identities=16% Similarity=0.082 Sum_probs=325.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAG 94 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (504)
...+.+..+++.....-....+..|. -..+|..+.+.+-..|++.+|+.+++.+.+.. +.....|..+..++...|
T Consensus 89 ~ai~~q~~r~d~s~a~~~~a~r~~~q---~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~ 164 (966)
T KOG4626|consen 89 SAIFFQGSRLDKSSAGSLLAIRKNPQ---GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQG 164 (966)
T ss_pred hhhhhcccchhhhhhhhhhhhhccch---HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcC
Confidence 35566666777777666666666554 67789999999999999999999999999886 667788999999999999
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHH
Q 043204 95 QLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVF 174 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 174 (504)
+.+.|.+.|.+..+.++.. ....+.+...+...|++++|...|.+..+.. +--...|..|...+-..|+.-.|+..|
T Consensus 165 ~~~~a~~~~~~alqlnP~l-~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y 241 (966)
T KOG4626|consen 165 DLELAVQCFFEALQLNPDL-YCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHY 241 (966)
T ss_pred CCcccHHHHHHHHhcCcch-hhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHH
Confidence 9999999999888765321 2234455666667789999988888776542 123567888888899999999999999
Q ss_pred HHhhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCc-CHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 043204 175 QEMDFQGCYPD-RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGE-DIVIYRTLLFALCDQGKIQDAMQILEKIL 252 (504)
Q Consensus 175 ~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 252 (504)
++.... .|+ ...|..|-..|...+.+++|...|.+. .. ..| ....+..+...|...|+++-|+..+++.+
T Consensus 242 ~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA----l~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 242 EEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRA----LN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred HHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHH----Hh--cCCcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 998875 344 467888889999999999999998876 33 334 46778888888999999999999999988
Q ss_pred HcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchh
Q 043204 253 RKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLV 332 (504)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (504)
+. .|.-...+..+..+....|++.+|...+...+..... .....+.+...+...|.+++|..+|....+-.+. -..
T Consensus 314 ~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aa 389 (966)
T KOG4626|consen 314 EL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAA 389 (966)
T ss_pred hc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhh
Confidence 75 5666666777788888889999999999999877654 5667788899999999999999999998885322 346
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc-hhhHHHHH
Q 043204 333 MYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPT-VRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVAN-GETYGILV 410 (504)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 410 (504)
.++.|...|-..|++++|+..|+++++ +.|+ ...|+.+...|-..|+.+.|.+.+.+... +.|. ....+.|.
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~---~nPt~AeAhsNLa 463 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ---INPTFAEAHSNLA 463 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh---cCcHHHHHHhhHH
Confidence 788999999999999999999998665 4565 45899999999999999999999999884 4665 35788899
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCcCCC-cchHHHHHHHH
Q 043204 411 DGLCRDGRFLEASRVLEEMLIRSYWPC-VETYNVLIRGL 448 (504)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 448 (504)
..|...|++.+|..-+++..+. +|| +..|..++.++
T Consensus 464 si~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL 500 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence 9999999999999999999985 466 34555555443
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=5.8e-19 Score=170.80 Aligned_cols=361 Identities=14% Similarity=0.098 Sum_probs=218.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChh
Q 043204 18 IKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLN 97 (504)
Q Consensus 18 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (504)
+.++.+|+.---.|....+....-..+..-...++..+.+.|++.+|..+++...... +-+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 3455666655555554444321111133345566677888899999999998888776 555566666667777889999
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 043204 98 EAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEM 177 (504)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (504)
.|...|+.+.+..+ .+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++.+
T Consensus 94 ~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 94 AVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99999998887653 345677788888888999999999998887542 224566777888888899999999988887
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCC
Q 043204 178 DFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLK 257 (504)
Q Consensus 178 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 257 (504)
...... +...+..+ ..+...|++++|...++.+ ......++...+..+..++...|++++|...++++.+..
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~----l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-- 242 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARAL----LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-- 242 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHH----HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--
Confidence 665322 22233333 3477888999998888877 444333344455556677888888888888888887753
Q ss_pred CCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCcchhh
Q 043204 258 APKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVE----GDKVLDEMRTKGFWPSLVM 333 (504)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~ 333 (504)
|.+. ..+..+...+...|++++ |...|++..+..+. +...
T Consensus 243 p~~~-----------------------------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a 286 (656)
T PRK15174 243 LDGA-----------------------------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRI 286 (656)
T ss_pred CCCH-----------------------------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHH
Confidence 3333 333344444444455443 45555555443221 3444
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhh-HHHHHHH
Q 043204 334 YEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGET-YGILVDG 412 (504)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~ 412 (504)
+..+...+...|++++|...+++++... +.+...+..+..++.+.|++++|...++.+... .|+... +..+..+
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~a 361 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHH
Confidence 4455555555555555555555533322 122233444444555555555555555555432 222211 2223344
Q ss_pred HhhcCcHHHHHHHHHHHHh
Q 043204 413 LCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~ 431 (504)
+...|+.++|.+.|++..+
T Consensus 362 l~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 4555555555555555544
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1.2e-18 Score=172.42 Aligned_cols=416 Identities=11% Similarity=0.025 Sum_probs=239.2
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMV 126 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (504)
...-.+.+....|+.++|++++....... +.+...+..+...+...|++++|.++|+...+..+ .+...+..+...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 33444445555555555555555555422 33444455555555555555555555555554431 22334445555555
Q ss_pred hcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043204 127 KESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEAT 206 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 206 (504)
..|+.++|...++++....+. +.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..+.|+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~--~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPD--KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCC--CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHH
Confidence 555555555555555543221 222 455555555556666666666655554211 2333344444555555555555
Q ss_pred HHHHHHHHHHhhCCCCcCH------HHHHHHHHHHH-----hcCch---hHHHHHHHHHHHc-CCCCCcchhhh-h-h--
Q 043204 207 HLLYSMFWRISQKGSGEDI------VIYRTLLFALC-----DQGKI---QDAMQILEKILRK-GLKAPKSRRHR-I-D-- 267 (504)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~~~~~-~-~-- 267 (504)
..++.. .. .|+. .....++..+. ..+++ ++|++.++.+.+. ...|....... . +
T Consensus 171 ~~l~~~----~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 171 GAIDDA----NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHhC----CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 555443 11 1110 01111122111 11223 5566666666643 11222111100 0 0
Q ss_pred ccccCCCCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc---chhhHHHHHHHHhc
Q 043204 268 LCPCNDGEDIEGAKSLINEALIRGGI-PSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWP---SLVMYEAKLAALFK 343 (504)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 343 (504)
+..+...+++++|...|+.+.+.+.. |+. .-..+...+...|++++|+..|+++.+..... .......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 11223446777777777777665432 322 12224567788899999999998887653221 12345566667888
Q ss_pred CCCHHHHHHHHHHHHhcCC----------CCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 043204 344 DGMVDEALEVIEEEMVKGT----------FVPT---VRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILV 410 (504)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 410 (504)
.|++++|..+++.+..... ..|+ ...+..+...+...|+.++|++.++++... .+.+...+..+.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA 400 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYA 400 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8999999999887443321 1123 224456667788899999999999998864 344567788888
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCcCCC-cchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043204 411 DGLCRDGRFLEASRVLEEMLIRSYWPC-VETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVAS 482 (504)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 482 (504)
..+...|++++|++.+++..+.. |+ ...+......+...|++++|..+++++.+. .|+......+-+.
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~ 469 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARA 469 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 89999999999999999988864 54 566666777888999999999999999953 5776655555444
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=1.2e-17 Score=162.01 Aligned_cols=435 Identities=11% Similarity=0.007 Sum_probs=250.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 043204 14 LSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARA 93 (504)
Q Consensus 14 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
.+-...+.|+++.|+..|+++.+..|. +......++..+...|+.++|+..+++..... +.+......+...+...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~---~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPL---QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCcc---chhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHc
Confidence 345677899999999999999998775 32222288888888899999999999998322 33334445556788889
Q ss_pred CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHH
Q 043204 94 GQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHV 173 (504)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 173 (504)
|++++|+++|+++.+..+.. ...+..++..+...++.++|+..++++... .|+...+..++..+...++..+|++.
T Consensus 116 gdyd~Aiely~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 99999999999999887544 667778888899999999999999998765 44445554444444446666669999
Q ss_pred HHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHH------HHHHHHH---H--hcCc--
Q 043204 174 FQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIY------RTLLFAL---C--DQGK-- 240 (504)
Q Consensus 174 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~g~-- 240 (504)
++++.+.. +-+...+..+..+..+.|-...|.++..+- .+. ..+...-+ ..+++.- . ...+
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~----p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN----PNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC----ccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 99999874 225677788888889999888888776543 111 11111000 1111100 0 0111
Q ss_pred -hhHHHHHHHHHHHcCC-CCCcchh-hh---hhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 043204 241 -IQDAMQILEKILRKGL-KAPKSRR-HR---IDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVE 314 (504)
Q Consensus 241 -~~~a~~~~~~~~~~~~-~~~~~~~-~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 314 (504)
.+.|+.-++.+...-. .|+.... .. =.+.++...++..++.+.++.+...+......+-..+.++|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 2334444444443211 1211111 11 1123334455556666666666555544334455555556665566666
Q ss_pred HHHHHHHHHHCCC-----CcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCC------------CCccHH-HHHHHHHH
Q 043204 315 GDKVLDEMRTKGF-----WPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGT------------FVPTVR-VYNILLKG 376 (504)
Q Consensus 315 a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~-~~~~l~~~ 376 (504)
|+.+|+.+..... .++......|..+|...+++++|..+++++..... ..||-. .+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 6666665544321 11222234555555666666666666665222111 001111 12233444
Q ss_pred HHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHH
Q 043204 377 LCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYE 456 (504)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 456 (504)
+...|+..+|++.++++... -+-|......+.+.+...|.+.+|.+.++...... +-+..+....+.++...|++.+
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHH
Confidence 55556666666666665442 23344555555555666666666666664444431 2233344444555555566666
Q ss_pred HHHHHHHHH
Q 043204 457 AVMWLEEMI 465 (504)
Q Consensus 457 a~~~~~~~~ 465 (504)
|..+.+.+.
T Consensus 503 A~~~~~~l~ 511 (822)
T PRK14574 503 MELLTDDVI 511 (822)
T ss_pred HHHHHHHHH
Confidence 666655555
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.3e-18 Score=161.81 Aligned_cols=472 Identities=13% Similarity=0.028 Sum_probs=297.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccC---ChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 043204 16 QIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESN---RITEMKEVIDQMKGDSCECKDSVFATAIRTYAR 92 (504)
Q Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
..+.+.|+.+.|+..|.++++.+|. ++.++-.|.-.-.... .+..+..++...-... +.|+.+.+.|.+.|.-
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp~---~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyf 282 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDPT---CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYF 282 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcChh---hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhh
Confidence 4455777778888888877777664 4444444433222222 2234444444443333 3444555555555555
Q ss_pred cCChhHHHHHHHHhhhCCCC--ccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHH
Q 043204 93 AGQLNEAVSLFKNLSQFNCV--NWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLA 170 (504)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 170 (504)
.|+++.+..+...+...... .-...|--+.++|...|++++|...|.+.....+-. .+..+--|...|.+.|+.+.+
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHH
Confidence 55555555555544432211 112234445555555555555555554443221100 122223344444444444444
Q ss_pred HHHHHHhhhCC-------------------------------------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043204 171 LHVFQEMDFQG-------------------------------------CYPDRESYHILMKGLCNDRRLNEATHLLYSMF 213 (504)
Q Consensus 171 ~~~~~~~~~~~-------------------------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 213 (504)
...|+...+.. .+.|...|-.+...+.. ++...++..|..+.
T Consensus 362 ~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 362 KFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNAL 440 (1018)
T ss_pred HHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHH
Confidence 44444443321 02234444444443333 33344466666665
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc---CCCCCc-----chhhhhhccccCCCCChHHHHHHHH
Q 043204 214 WRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRK---GLKAPK-----SRRHRIDLCPCNDGEDIEGAKSLIN 285 (504)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~ 285 (504)
..+...+..+.....|.+...+...|+++.|...|...... ...++. .+....+..+....++.+.|.+.|.
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 55666666778889999999999999999999999988765 111111 2233344566677788999999999
Q ss_pred HHHHcCCCCChh-hHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 043204 286 EALIRGGIPSLA-SYSAMAIDLYN-EGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTF 363 (504)
Q Consensus 286 ~~~~~~~~~~~~-~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 363 (504)
.+++.. |+-. .|-.+. +.++ .+...+|...+......+- .++..++.+...+.+...+..|.+-|.....+...
T Consensus 521 ~Ilkeh--p~YId~ylRl~-~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 521 SILKEH--PGYIDAYLRLG-CMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred HHHHHC--chhHHHHHHhh-HHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 998773 3333 233332 3333 3788889999988887542 36667777787888888888888877764444444
Q ss_pred CccHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 364 VPTVRVYNILLKGLCD------------AGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 364 ~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
.+|..+..+|.+.|.+ .+..++|+++|.++.+. .+.|...-|.+.-.++..|++.+|..||.+..+
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 5677777777776643 24567788888888763 455778888899999999999999999999998
Q ss_pred cCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHhh
Q 043204 432 RSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQ-AKLPDISVWSSLVASVCCNTADLNVCRKTLEQLS 501 (504)
Q Consensus 432 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 501 (504)
.. .-...+|-.+..+|...|+|..|+++|+...+. .-..+..+...|.+++...++ +.+|.+.+....
T Consensus 675 a~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~-~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 675 AT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK-LQEAKEALLKAR 743 (1018)
T ss_pred HH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh-HHHHHHHHHHHH
Confidence 74 246678889999999999999999999988754 334567888889999999888 999998877654
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.3e-18 Score=172.15 Aligned_cols=418 Identities=10% Similarity=-0.025 Sum_probs=300.4
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCC
Q 043204 66 EVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGW 145 (504)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 145 (504)
..++. ...+ +.++....-.+.+....|+.++|++++....... +.+...+..+...+.+.|++++|...+++.....
T Consensus 3 ~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~ 79 (765)
T PRK10049 3 SWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE 79 (765)
T ss_pred hhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555 3333 5566666677788889999999999999988644 3446678999999999999999999999987653
Q ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCH
Q 043204 146 EVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDI 225 (504)
Q Consensus 146 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (504)
+. +...+..+...+...|++++|...+++..+.. +.+.. +..+..++...|+.++|+..++++ ...... +.
T Consensus 80 P~--~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~a----l~~~P~-~~ 150 (765)
T PRK10049 80 PQ--NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQA----LPRAPQ-TQ 150 (765)
T ss_pred CC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHH----HHhCCC-CH
Confidence 32 34556788889999999999999999998873 23455 888888999999999999999998 444333 55
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCc-------c---hhhhhhccccCCCCCh---HHHHHHHHHHHHc-C
Q 043204 226 VIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPK-------S---RRHRIDLCPCNDGEDI---EGAKSLINEALIR-G 291 (504)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~-~ 291 (504)
..+..+..++...+..+.|++.++.... .|.. . .....+.......+.+ +.|...++.+.+. .
T Consensus 151 ~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 151 QYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 6666788888889999999998886553 1111 0 1111111112223334 7788888888854 2
Q ss_pred CCCChh-hHH----HHHHHHHhcCChhHHHHHHHHHHHCCCC-cchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCc
Q 043204 292 GIPSLA-SYS----AMAIDLYNEGRIVEGDKVLDEMRTKGFW-PSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVP 365 (504)
Q Consensus 292 ~~~~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 365 (504)
..|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+. .-..+...|...|++++|+..|++++......+
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 233221 111 1134556779999999999999987632 322 222357789999999999999998554332221
Q ss_pred --cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC----------CCCc---hhhHHHHHHHHhhcCcHHHHHHHHHHHH
Q 043204 366 --TVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVG----------CVAN---GETYGILVDGLCRDGRFLEASRVLEEML 430 (504)
Q Consensus 366 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 430 (504)
.......+..++...|++++|.++++.+.+... -.|+ ...+..+...+...|+.++|.++++++.
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 134566677788999999999999999986411 1122 1244567788899999999999999998
Q ss_pred hcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCCCchhHHHHHHHHhhcC
Q 043204 431 IRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISV-WSSLVASVCCNTADLNVCRKTLEQLSSC 503 (504)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 503 (504)
... +.+...+..+...+...|++++|++.+++..+ ..|+... +......+... +++++|..+++++++.
T Consensus 387 ~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~-~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 387 YNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDL-QEWRQMDVLTDDVVAR 456 (765)
T ss_pred HhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHh
Confidence 863 45677888899999999999999999999995 4577544 33444443444 4599999999998753
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=2.1e-17 Score=163.78 Aligned_cols=259 Identities=13% Similarity=0.037 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 043204 225 IVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAI 304 (504)
Q Consensus 225 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 304 (504)
...|..+..++.. ++.++|...+.+..... |+.. ....+...+...|+++.|...++++.... |+...+..+..
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~ 550 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW-QHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAAN 550 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHH
Confidence 3444555555544 56667777777666543 3322 23333444568899999999999876542 33445566677
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChH
Q 043204 305 DLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSA 384 (504)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (504)
.+.+.|+.++|...+++..+.++. +...+..+.......|++++|...+++++.. .|+...+..+..++.+.|+++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHH
Confidence 788899999999999999987532 3333334444555679999999999996654 467788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHH
Q 043204 385 VAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEM 464 (504)
Q Consensus 385 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 464 (504)
+|+..+++.... .+.+...+..+..++...|+.++|...+++..+.. +-+...+..+..++...|++++|+..+++.
T Consensus 627 eA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 627 AAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999864 23345677888889999999999999999999864 345678889999999999999999999999
Q ss_pred HHcCCCCCHHHHH-HHHHHHhcCCCchhHHHHHHHH
Q 043204 465 ISQAKLPDISVWS-SLVASVCCNTADLNVCRKTLEQ 499 (504)
Q Consensus 465 ~~~~~~p~~~~~~-~ll~~~~~~~~~~~~a~~~~~~ 499 (504)
.+ ..|+..... ..-.. .....+++.+.+-+++
T Consensus 704 l~--l~P~~a~i~~~~g~~-~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 704 ID--DIDNQALITPLTPEQ-NQQRFNFRRLHEEVGR 736 (987)
T ss_pred Hh--cCCCCchhhhhhhHH-HHHHHHHHHHHHHHHH
Confidence 95 456653322 22222 2222236666655544
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=3.5e-16 Score=132.69 Aligned_cols=380 Identities=13% Similarity=0.064 Sum_probs=265.7
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043204 114 WTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILM 193 (504)
Q Consensus 114 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 193 (504)
+..+|..+|.++++-...+.|.+++++..... .+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 45788999999999999999999999887653 4557788898887654332 278889999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhH-HHHHHHHHHHc-------CCCCCcchhhh
Q 043204 194 KGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQD-AMQILEKILRK-------GLKAPKSRRHR 265 (504)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~-------~~~~~~~~~~~ 265 (504)
++..+.|+++.|..-+-++..++++.|+.|...+|..++..+++-++..+ +..++.++... -..|++..++.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999999888777776666666999999999999999998888877643 55555555432 23456666666
Q ss_pred hhccccCCCCChHHHHHHHHHHHHcC----CCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHH
Q 043204 266 IDLCPCNDGEDIEGAKSLINEALIRG----GIP---SLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKL 338 (504)
Q Consensus 266 ~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (504)
-.+..|.+..|.+.|.++..-+.... +.| ....|..+....++....+.....|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 77888888888888888766554321 112 23456677788888899999999999998887888888888999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC-Ch--H-----------HHHHHHHHHHHh----cCCC
Q 043204 339 AALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAG-NS--A-----------VAVMYLKKMSKQ----VGCV 400 (504)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--~-----------~a~~~~~~~~~~----~~~~ 400 (504)
++..-.+.++-.-+++.+ +...|..-+...-..++..+++.. .+ . -|..+++..... ....
T Consensus 441 rA~~v~~~~e~ipRiw~D-~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~ 519 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKD-SKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD 519 (625)
T ss_pred HHHhhcCcchhHHHHHHH-HHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence 998888988888888887 665554444444444444444433 11 0 011122111110 0223
Q ss_pred CchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcC-cCCCcchHH---HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043204 401 ANGETYGILVDGLCRDGRFLEASRVLEEMLIRS-YWPCVETYN---VLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVW 476 (504)
Q Consensus 401 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 476 (504)
......+.+.-.+.+.|+.++|.+++.-+.+.+ -.|-....+ -+++.-.+.+++..|..+++-|...++..-...-
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La 599 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLA 599 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHH
Confidence 344566777778899999999999999986543 234444455 5666777889999999999999876543333344
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHh
Q 043204 477 SSLVASVCCNTADLNVCRKTLEQL 500 (504)
Q Consensus 477 ~~ll~~~~~~~~~~~~a~~~~~~~ 500 (504)
+-+... |..+..-.++.+-+..+
T Consensus 600 ~RI~e~-f~iNqeq~~~ls~l~~L 622 (625)
T KOG4422|consen 600 QRIMED-FAINQEQKEALSNLTAL 622 (625)
T ss_pred HHHHHh-cCcCHHHHHHHhhhhhh
Confidence 555555 33333344555544433
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.8e-16 Score=147.80 Aligned_cols=449 Identities=12% Similarity=0.038 Sum_probs=313.1
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCcc-HHHHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECK-DSVFAT 85 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 85 (504)
++...+.|...|...|+++.+..+...+....-.-.--...|..+.+++-..|++++|...|....+.. +.+ ...+.-
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-~d~~~l~~~G 347 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-NDNFVLPLVG 347 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-CCCccccccc
Confidence 445556677777777777777777777766521000112346677777777888888888777766654 222 233555
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc----hHHHHHHHHHHhhcCCCCcchHHHHHHHHHHH
Q 043204 86 AIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES----KLEAAHILFLRSCYGWEVKSRIQSLNLLMDVL 161 (504)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (504)
+...+++.|+++.+...|+.+.+.. +....+...|...|...+ ..+.|..++.+..... +.|...|-.+...+
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLL 424 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHH
Confidence 6777778888888888888777654 333455556666666554 4566666666665442 34566666666665
Q ss_pred hhcCCHHHHHHHHHHh----hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHh-----hCCCCcCHHHHHHHH
Q 043204 162 CQCRRSDLALHVFQEM----DFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRIS-----QKGSGEDIVIYRTLL 232 (504)
Q Consensus 162 ~~~~~~~~a~~~~~~~----~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~l~ 232 (504)
... +.-.++.+|... ...+..+.+...|.+...+...|++..|...|........ +.|-.++..+-..+.
T Consensus 425 e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred Hhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 544 343346666544 3455568888999999999999999999999998854311 011122333444567
Q ss_pred HHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 043204 233 FALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRI 312 (504)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 312 (504)
.+.-..++.+.|.+.|..+++. .|.-...+.-++......++..+|...+......+-. ++..+..+...+.+...+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhh
Confidence 7777788999999999999986 3444444444555666778899999999998876543 555566565677777778
Q ss_pred hHHHHHHHHHHHCC-CCcchhhHHHHHHHHhc------------CCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh
Q 043204 313 VEGDKVLDEMRTKG-FWPSLVMYEAKLAALFK------------DGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCD 379 (504)
Q Consensus 313 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (504)
..|..-|....+.- ..+|..+.-+|.+.|.. .+..++|+++|.+++... +.|...-+.+.-.++.
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAE 658 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhh
Confidence 88877666655432 22566666667665542 245678999998855554 5677777888888999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhc-CcCCCcchHHHHHHHHHccCCHHHHH
Q 043204 380 AGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIR-SYWPCVETYNVLIRGLCSIGKQYEAV 458 (504)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 458 (504)
.|++..|..+|.++.+. ......+|-.+.++|+.+|++-.|.++|+...+. .-.-+..+...|.+++.+.|.+.+|.
T Consensus 659 kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred ccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999886 2335567888999999999999999999987765 33456778889999999999999999
Q ss_pred HHHHHHHHc
Q 043204 459 MWLEEMISQ 467 (504)
Q Consensus 459 ~~~~~~~~~ 467 (504)
+.+......
T Consensus 737 ~~ll~a~~~ 745 (1018)
T KOG2002|consen 737 EALLKARHL 745 (1018)
T ss_pred HHHHHHHHh
Confidence 998888754
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=5.4e-15 Score=143.80 Aligned_cols=412 Identities=12% Similarity=0.024 Sum_probs=297.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYAR 92 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
.++..+...|+.++|+..+++.....| ........+...+...|++++|.++|+++.+.. +.++..+..++..+..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n---~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMN---ISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhh
Confidence 778888899999999999999984322 133444444678889999999999999999987 6667788888999999
Q ss_pred cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHH
Q 043204 93 AGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALH 172 (504)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 172 (504)
.++.++|++.++.+.... |+...+..++..+...++..+|+..++++.... +.+...+..++.++.+.|-...|.+
T Consensus 149 ~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 149 AGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred cCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999998775 344555455555555667766999999998763 2345566888889999999999998
Q ss_pred HHHHhhhCCCCCCHhh------HHHHHHHH-----HhcCCH---HHHHHHHHHHHHHHhhCCCCcCH-H----HHHHHHH
Q 043204 173 VFQEMDFQGCYPDRES------YHILMKGL-----CNDRRL---NEATHLLYSMFWRISQKGSGEDI-V----IYRTLLF 233 (504)
Q Consensus 173 ~~~~~~~~~~~p~~~~------~~~l~~~~-----~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~-~----~~~~l~~ 233 (504)
+..+-...- .+...- ...+++.- ...+++ +.|+.-++.+. ...+..|.. . ...-.+-
T Consensus 225 l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~---~~~~~~p~~~~~~~~~~~Drl~ 300 (822)
T PRK14574 225 LAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL---TRWGKDPEAQADYQRARIDRLG 300 (822)
T ss_pred HHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH---hhccCCCccchHHHHHHHHHHH
Confidence 877644221 111100 11111110 011223 44455555542 223333332 1 2233456
Q ss_pred HHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHh
Q 043204 234 ALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGG-----IPSLASYSAMAIDLYN 308 (504)
Q Consensus 234 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~~~ 308 (504)
++...|+..++++.|+.+...+.+.|.. ....+..++...+++++|..+++++..... .++......|.-++..
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y-~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDY-ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 7788999999999999999887654444 555568889999999999999999976542 1233335678888889
Q ss_pred cCChhHHHHHHHHHHHCCC-----------Ccch---hhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 043204 309 EGRIVEGDKVLDEMRTKGF-----------WPSL---VMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILL 374 (504)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (504)
.+++++|..+++.+.+..+ .|+. ..+..++..+...|+..+|++.+++..... +-|......+.
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A 457 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALA 457 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 9999999999999998422 1221 223456777899999999999999954443 56788888999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHH
Q 043204 375 KGLCDAGNSAVAVMYLKKMSKQVGCVAN-GETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVL 444 (504)
Q Consensus 375 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 444 (504)
..+...|.+.+|++.++.... +.|+ ..+....+.++...|++.+|.++.+...+.. |+......|
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~--Pe~~~~~~l 523 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVES---LAPRSLILERAQAETAMALQEWHQMELLTDDVISRS--PEDIPSQEL 523 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC--CCchhHHHH
Confidence 999999999999999977664 3554 5667788889999999999999999999863 666544443
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.2e-15 Score=130.62 Aligned_cols=466 Identities=12% Similarity=0.029 Sum_probs=298.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcchhcH-HHHHHHHhccCChhHHHHHHHHhhcCCCCccH----HHHHHHHHHH
Q 043204 16 QIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVY-ASMIGILSESNRITEMKEVIDQMKGDSCECKD----SVFATAIRTY 90 (504)
Q Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~ 90 (504)
+-|....-..+|+..++-+.+. .+-|+...+ -.+.+.+.+.+.+.+|++.++.....-...+. .+.+.+.-.+
T Consensus 209 qqy~~ndm~~ealntyeiivkn--kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKN--KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcc--cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 4444555667788888777765 455565544 34456777777888888877766544212222 2345555566
Q ss_pred HhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCC-----------cchHHHHHHHH-
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEV-----------KSRIQSLNLLM- 158 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~l~- 158 (504)
.+.|+++.|+..|+...+.. |+..+-..|+-.+..-|+-++..+.|.++..-++. .|+....+.-+
T Consensus 287 iq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 77788888888887766553 44444444555555667777777777777543221 22222222211
Q ss_pred ----HHHhhcC--CHHHHHHHHHHhhhCCCCCCHhh-------------HHH--------HHHHHHhcCCHHHHHHHHHH
Q 043204 159 ----DVLCQCR--RSDLALHVFQEMDFQGCYPDRES-------------YHI--------LMKGLCNDRRLNEATHLLYS 211 (504)
Q Consensus 159 ----~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~-------------~~~--------l~~~~~~~~~~~~a~~~~~~ 211 (504)
.-.-+.+ +.++++-.--++..--+.|+-.. +.- -..-+.+.|+++.|.++++-
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 1111111 11222211122222112222110 000 11235788999999999886
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHH-Hh-cCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHH
Q 043204 212 MFWRISQKGSGEDIVIYRTLLFAL-CD-QGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALI 289 (504)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~~-~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (504)
. .+...+.-...-+.|...+ .+ -.++..|..+-+..+.... -+......-.......|+++.|.+.+++.+.
T Consensus 445 ~----~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr--yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 445 F----EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR--YNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred H----HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc--cCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 6 3333332222333333222 22 3357777777776655422 2233333335566678999999999999987
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHH
Q 043204 290 RGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRV 369 (504)
Q Consensus 290 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 369 (504)
....-....||.- ..+-..|++++|+..|-++..- +..+..+...+.+.|....+...|++++-+ .. .-++.|+..
T Consensus 519 ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q-~~-slip~dp~i 594 (840)
T KOG2003|consen 519 NDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ-AN-SLIPNDPAI 594 (840)
T ss_pred CchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH-hc-ccCCCCHHH
Confidence 6333223334332 2455669999999999887653 123677788888999999999999999865 22 235668889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHH-
Q 043204 370 YNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGL- 448 (504)
Q Consensus 370 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~- 448 (504)
...|...|-+.|+-..|.+.+-.--+ -++.+..+...|..-|....-+++|..+|++..- ++|+..-|..++..|
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHH
Confidence 99999999999999999987766443 3566788999999999999999999999998765 579999999998765
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHhhc
Q 043204 449 CSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQLSS 502 (504)
Q Consensus 449 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 502 (504)
.+.|++.+|+++++..... ++-|...+.-|++. |-.-| +.++.++.+++.+
T Consensus 671 rrsgnyqka~d~yk~~hrk-fpedldclkflvri-~~dlg-l~d~key~~klek 721 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRI-AGDLG-LKDAKEYADKLEK 721 (840)
T ss_pred HhcccHHHHHHHHHHHHHh-CccchHHHHHHHHH-hcccc-chhHHHHHHHHHH
Confidence 5689999999999999864 66677777777775 77677 7788877766643
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.5e-14 Score=122.91 Aligned_cols=236 Identities=15% Similarity=0.121 Sum_probs=109.2
Q ss_pred CCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHH
Q 043204 9 LTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIR 88 (504)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
.++..+|..+++-...+.|.+++.+.... ..+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+++.
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~--k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAA--KGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh--hheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 44555555555555555555555555544 33445555555554432221 1445555555555555555555555
Q ss_pred HHHhcCChhH----HHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHH-HHHHHHHHhhc-------CCCCcchHHHHHH
Q 043204 89 TYARAGQLNE----AVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLE-AAHILFLRSCY-------GWEVKSRIQSLNL 156 (504)
Q Consensus 89 ~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~-------~~~~~~~~~~~~~ 156 (504)
+..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++.. .+..++.++.. .+..+.|..-|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 5555554433 3344445555555555555555555555544432 22233322221 0111122333444
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhC----CCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHH
Q 043204 157 LMDVLCQCRRSDLALHVFQEMDFQ----GCYPDR---ESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYR 229 (504)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 229 (504)
.+..|.+..|.+.|.++-.-+... -+.|+. .-|..+..+.+.....+....+|+.| .-.-.-|+..+..
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l----VP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL----VPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccceecCCchhHH
Confidence 455555555555555544333221 011221 12333444444455555555555555 3444444555555
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 230 TLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
.++++..-.|.++-.-+++.++...
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHh
Confidence 5555555555555555555554443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=8.8e-14 Score=129.24 Aligned_cols=186 Identities=14% Similarity=0.068 Sum_probs=98.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHH
Q 043204 21 QKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAV 100 (504)
Q Consensus 21 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (504)
.|+.++|.+++.++.+..|. +...|.+|...|-+.|+.+++...+-...... |.|...|..+.....+.|+++.|.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred hCCHHHHHHHHHHHHHhCcc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 46666666666666666554 55566666666666666666665554444443 444455666666666666666666
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHH----HHHHHHHHHhhcCCHHHHHHHHHH
Q 043204 101 SLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQ----SLNLLMDVLCQCRRSDLALHVFQE 176 (504)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 176 (504)
-.|.+..+.++...... -.-...|-+.|+...|...|.++....+ +.|.. .-...+..+...++.+.|.+.++.
T Consensus 228 ~cy~rAI~~~p~n~~~~-~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELI-YERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHhcCCcchHHH-HHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666553332222 2334455566666666666666554322 11111 112223344445555666665555
Q ss_pred hhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 177 MDFQ-GCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 177 ~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
.... +-..+...+++++..+.+...++.+......+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~ 342 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDD 342 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 5442 22334455566666666666666665555554
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=2e-13 Score=117.72 Aligned_cols=426 Identities=12% Similarity=0.073 Sum_probs=274.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccH-HHHHHHHHHHHhcCChhH
Q 043204 20 KQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKD-SVFATAIRTYARAGQLNE 98 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 98 (504)
.+++.+.|..+|++++..+ ..+...|...+.+-.++.++..|..++++....- |.+ ..|.-.+..--..|++..
T Consensus 85 sq~e~~RARSv~ERALdvd---~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD---YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHH
Confidence 4677888999999999863 3477888888898899999999999999988763 443 346666666667899999
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q 043204 99 AVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMD 178 (504)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (504)
|.++|+...+. .|+...|.+.|+.-.+.+.++.|..++++... .+|++.+|--....-.+.|+...|..+|+...
T Consensus 160 aRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 160 ARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999988764 68889999999999999999999999999874 46899988888888888999999999998877
Q ss_pred hCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC-----------------------------------
Q 043204 179 FQGCYPDRE----SYHILMKGLCNDRRLNEATHLLYSMFWRISQK----------------------------------- 219 (504)
Q Consensus 179 ~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------------------- 219 (504)
+. --|.. .+.+...--.++..++.|.-+|+-.++.+.+.
T Consensus 235 e~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 235 EF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 64 11222 23333332234556666666665542211110
Q ss_pred ----CCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcc-hh----hhhhccc----cCCCCChHHHHHHHHH
Q 043204 220 ----GSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKS-RR----HRIDLCP----CNDGEDIEGAKSLINE 286 (504)
Q Consensus 220 ----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~----~~~~~~~----~~~~~~~~~a~~~~~~ 286 (504)
..+-|-.+|--.++.-...|+.+...++|+..+.. ++|... .+ ..+-+.. -....|++.+.++++.
T Consensus 313 ~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 313 KEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11224445555555555666777777777776654 222111 00 0000111 1344666677777766
Q ss_pred HHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 043204 287 ALIRGGIPSLASYSAMAIDLYN----EGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGT 362 (504)
Q Consensus 287 ~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 362 (504)
.++. +.....||..+-..|++ ..++..|.+++...+. .-|...+|...|..-.+.++++.+..+|++.+. .+
T Consensus 392 ~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-~~ 467 (677)
T KOG1915|consen 392 CLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-FS 467 (677)
T ss_pred HHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC
Confidence 6652 22244555544444433 3666677776665553 345666677777766777777777777777333 32
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHH
Q 043204 363 FVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYN 442 (504)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 442 (504)
+-+..+|......-...|+.+.|..+|+-..++..+......|.+.|+.-...|.++.|..+++++.+.. +...+|-
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWi 544 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWI 544 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHH
Confidence 3455666666666666777777777777777663334444566666666667777777777777777653 4444555
Q ss_pred HHHHHHH-----ccC-----------CHHHHHHHHHHHH
Q 043204 443 VLIRGLC-----SIG-----------KQYEAVMWLEEMI 465 (504)
Q Consensus 443 ~l~~~~~-----~~g-----------~~~~a~~~~~~~~ 465 (504)
++..--. ..| ....|..+|++..
T Consensus 545 sFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 545 SFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 5443222 223 4556666666654
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=1.5e-13 Score=127.73 Aligned_cols=306 Identities=15% Similarity=0.141 Sum_probs=222.0
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATA 86 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
....|-.|...|-.+|+.++++..+-.+...+|+ |...|-.+.....+.|+++.|.-+|.+.++.. |++....-.-
T Consensus 172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~er 247 (895)
T KOG2076|consen 172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYER 247 (895)
T ss_pred chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHH
Confidence 3456888999999999999999999999988887 88899999999999999999999999999987 6666666677
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHH----HHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHh
Q 043204 87 IRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTL----LKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLC 162 (504)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (504)
...|-+.|+...|...|.++.+...+.+..-+..+ +..+...++-+.|.+.++......+-..+...++.++..+.
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 88899999999999999999988764444444444 44455667778888888887764334444556677888888
Q ss_pred hcCCHHHHHHHHHHhhhCC---------------------------CCCC------------------------------
Q 043204 163 QCRRSDLALHVFQEMDFQG---------------------------CYPD------------------------------ 185 (504)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~~---------------------------~~p~------------------------------ 185 (504)
+...++.+......+.... +.++
T Consensus 328 ~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n 407 (895)
T KOG2076|consen 328 KNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN 407 (895)
T ss_pred HhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc
Confidence 8888888877766655411 1111
Q ss_pred ------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCC
Q 043204 186 ------RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAP 259 (504)
Q Consensus 186 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 259 (504)
...|.-+..++...|++..|+.+|..+ ......-+...|-.+..+|...|..+.|.+.|+.++.. .|+
T Consensus 408 ~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i----~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~ 481 (895)
T KOG2076|consen 408 VWVSDDVDLYLDLADALTNIGKYKEALRLLSPI----TNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APD 481 (895)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH----hcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCC
Confidence 122344455667778888888888777 44444446778888888888888888888888888775 567
Q ss_pred cchhhhhhccccCCCCChHHHHHHHHHHHH--------cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043204 260 KSRRHRIDLCPCNDGEDIEGAKSLINEALI--------RGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEM 322 (504)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 322 (504)
+......+..++...|+.++|.+.+..+.. .+..|+..........+.+.|+.++-+.+...|
T Consensus 482 ~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 482 NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 777777778888888888888888877542 223333444444445555566666554444443
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=2.3e-15 Score=128.82 Aligned_cols=439 Identities=12% Similarity=0.065 Sum_probs=300.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHH-HHHHHHHHhcCChhHHHHHHHHhhhCCCCcc----HHHHHHHH
Q 043204 48 YASMIGILSESNRITEMKEVIDQMKGDSCECKDSVF-ATAIRTYARAGQLNEAVSLFKNLSQFNCVNW----TQSFNTLL 122 (504)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll 122 (504)
+..|..-|..+.-..+|+..++-+.+..+-|+.-.. ..+...+.+.+.+.+|++.|......-+..+ ....+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 444556666677778999999999988877877653 4456778889999999999987765432222 33456666
Q ss_pred HHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCC------------CHhhHH
Q 043204 123 KEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYP------------DRESYH 190 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p------------~~~~~~ 190 (504)
-.+.+.|.++.|+..|+...+. .|+..+--.|+-++..-|+.++..+.|.+|..--..| +....+
T Consensus 284 vtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 6788999999999999998754 5676665666667777899999999999998743222 322333
Q ss_pred HHHH-----HHHhcC--CHHHHHHHHHHHHHHHhhCCCCcCHHH-------------HH--------HHHHHHHhcCchh
Q 043204 191 ILMK-----GLCNDR--RLNEATHLLYSMFWRISQKGSGEDIVI-------------YR--------TLLFALCDQGKIQ 242 (504)
Q Consensus 191 ~l~~-----~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~-------------~~--------~l~~~~~~~g~~~ 242 (504)
..|. -..+.+ +-+++.-.--++ ...-+.|+... +. .-..-+.+.|+++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~ki----iapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKI----IAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHH----hccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 2222 111111 112222221122 22223333110 11 1123477899999
Q ss_pred HHHHHHHHHHHcCCCCCcchhhhh-hccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 043204 243 DAMQILEKILRKGLKAPKSRRHRI-DLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDE 321 (504)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (504)
.|.++++-..+..-...+.....+ .+.+.....++..|...-+..+..... +......-.......|++++|...|++
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 999999988776544333322222 233344556777777777666543221 222222222333445999999999999
Q ss_pred HHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC
Q 043204 322 MRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVA 401 (504)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 401 (504)
.......-....|+ +.-.+-..|++++|++.|-+ +.. -+..+......+...|-...++..|++++-+... -++.
T Consensus 516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~k-lh~-il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~ 590 (840)
T KOG2003|consen 516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLK-LHA-ILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPN 590 (840)
T ss_pred HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHH-HHH-HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCC
Confidence 98863222222222 23346778999999999876 321 1244666777888899999999999999988764 3555
Q ss_pred chhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043204 402 NGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVA 481 (504)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 481 (504)
|+.+.+-|.+.|-+.|+-..|.+..-+--. -++-+..+..-|...|....-+++++.+|++.. -+.|+..-|..++.
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmia 667 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIA 667 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHH
Confidence 778899999999999999999988765544 256788888889989999999999999999987 57899999999999
Q ss_pred HHhcCCCchhHHHHHHHHhhc
Q 043204 482 SVCCNTADLNVCRKTLEQLSS 502 (504)
Q Consensus 482 ~~~~~~~~~~~a~~~~~~~~~ 502 (504)
.|.+..|++..|.++++...+
T Consensus 668 sc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 988888889999999987654
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=1.3e-12 Score=117.22 Aligned_cols=460 Identities=13% Similarity=0.103 Sum_probs=310.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHH----hhcCCCCccHHHHHHHHH
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQ----MKGDSCECKDSVFATAIR 88 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~ 88 (504)
.|.-+|++..-++.|..+++++.+..|. +...|.+-...--++|+.+...+++.+ +...|+..+...|..=..
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~ipt---d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREIIPT---DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 3556677777788888888888887665 777777777666777888888777655 445677778888877777
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCc--cHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCC
Q 043204 89 TYARAGQLNEAVSLFKNLSQFNCVN--WTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRR 166 (504)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 166 (504)
.|-..|..-.+..+....+..|+.- ...||..-...|.+.+.++-|..+|....+- .+-+...|......--..|.
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCc
Confidence 7877788777777777777666543 2346777777888888888888888777654 23345566666655556688
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHH
Q 043204 167 SDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQ 246 (504)
Q Consensus 167 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (504)
.++...+|++....- +-....|-...+-+-..|++..|..++..++ +.... +...|-.-+..-..+.+++.|..
T Consensus 566 ~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af----~~~pn-seeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 566 RESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAF----EANPN-SEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred HHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHH----HhCCC-cHHHHHHHHHHhhccccHHHHHH
Confidence 888888888887762 2234455555666667788888888888774 33222 66777777788888888888888
Q ss_pred HHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 043204 247 ILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLA-SYSAMAIDLYNEGRIVEGDKVLDEMRTK 325 (504)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (504)
+|.+....+ ++...+.--+.+-.-.+..++|.+++++.++. .|+-. .|..+...+-+.++.+.|...|..-.+.
T Consensus 640 llakar~~s---gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 640 LLAKARSIS---GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHhccC---CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 888876642 22222222244445567788888888877765 34433 3444444455557777777777655543
Q ss_pred CCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhh
Q 043204 326 GFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGET 405 (504)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 405 (504)
++-.+..|-.|...--+.|.+-+|..++++...++ +.+...|...|+.-.+.|+.+.|..+..+..+. ++.+...
T Consensus 715 -cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~L 789 (913)
T KOG0495|consen 715 -CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLL 789 (913)
T ss_pred -CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchh
Confidence 33355667777777777788888888888755544 456778888888888888888888888887763 4555666
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHh
Q 043204 406 YGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDI-SVWSSLVASVC 484 (504)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~ 484 (504)
|..-|....+.++-......++ + ...|+++.-.+...|-...++++|.+.|.+.++. .||. .+|.-+..-+.
T Consensus 790 WaEaI~le~~~~rkTks~DALk---k--ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel 862 (913)
T KOG0495|consen 790 WAEAIWLEPRPQRKTKSIDALK---K--CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFEL 862 (913)
T ss_pred HHHHHHhccCcccchHHHHHHH---h--ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHH
Confidence 7776666666655443333332 2 2356677777777777778888888888888843 4554 56666666555
Q ss_pred cCCCchhHHHHHHHHhh
Q 043204 485 CNTADLNVCRKTLEQLS 501 (504)
Q Consensus 485 ~~~~~~~~a~~~~~~~~ 501 (504)
+.|. -++-.+++.+..
T Consensus 863 ~hG~-eed~kev~~~c~ 878 (913)
T KOG0495|consen 863 RHGT-EEDQKEVLKKCE 878 (913)
T ss_pred HhCC-HHHHHHHHHHHh
Confidence 5554 555555555443
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=1.2e-12 Score=113.12 Aligned_cols=441 Identities=11% Similarity=0.020 Sum_probs=318.9
Q ss_pred hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 043204 45 GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKE 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (504)
...|-....--..++++..|..+|++.+..+ ..+...|.-.+.+-.++..+..|..+++.....=+..| ..|-..+-+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHH
Confidence 3344444444456778889999999999877 66777788889999999999999999999877544443 344455555
Q ss_pred HHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 043204 125 MVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNE 204 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 204 (504)
--..|++..|.++|++-. ...|+...|++.|..-.+-+.++.|..++++..-. .|+..+|-.-.+.-.+.|+...
T Consensus 151 EE~LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHhcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 566799999999999987 36889999999999999999999999999999875 6999999988888889999999
Q ss_pred HHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHH-
Q 043204 205 ATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSL- 283 (504)
Q Consensus 205 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~- 283 (504)
+..+|+...+.+.+. ..+...+.+....=.++..++.|.-+|+-.+..-........+.-....-..-||.......
T Consensus 226 aR~VyerAie~~~~d--~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDD--EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 999999885332221 11234455555555566788999999998887632222233333333333344444443333
Q ss_pred -------HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcch--hhHHHHH----H-H---HhcCCC
Q 043204 284 -------INEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSL--VMYEAKL----A-A---LFKDGM 346 (504)
Q Consensus 284 -------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~----~-~---~~~~~~ 346 (504)
++..++.++. |-.+|-..+..--..|+.+...++|++.+.. ++|-. ..|.-.| + + -....+
T Consensus 304 v~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred hhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444433 6667777777777779999999999999875 44422 1222111 1 1 235788
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHH----HHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHH
Q 043204 347 VDEALEVIEEEMVKGTFVPTVRVYNILL----KGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEA 422 (504)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 422 (504)
.+.+.++|+..+. -++-..+||.-+= ..-.++.+...|.+++.... |..|...+|...|..-.+.++++..
T Consensus 382 ~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 382 VERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred HHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHH
Confidence 9999999997444 2444555555433 33447889999999999987 7899999999999999999999999
Q ss_pred HHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCCCchhHHHHHHHHhh
Q 043204 423 SRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAK-LPDISVWSSLVASVCCNTADLNVCRKTLEQLS 501 (504)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 501 (504)
.+++++..+.+ +-|-.+|......=...|+.+.|..+|+-..+... ......|.+.|.- -...+..+.|..++++++
T Consensus 457 RkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdF-Ei~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 457 RKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDF-EIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhh-hhhcchHHHHHHHHHHHH
Confidence 99999999975 44677788887777788999999999999986532 2334566777764 344445999999999987
Q ss_pred cC
Q 043204 502 SC 503 (504)
Q Consensus 502 ~~ 503 (504)
+.
T Consensus 535 ~r 536 (677)
T KOG1915|consen 535 DR 536 (677)
T ss_pred Hh
Confidence 64
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=7e-12 Score=112.69 Aligned_cols=450 Identities=10% Similarity=0.035 Sum_probs=352.8
Q ss_pred CCCchHHHHHHHhcCChhHHHHHHHHHHhcC--CCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCcc--HHHH
Q 043204 8 LLTPTYLSQIIKKQKSPLTALKIFKEAKEKY--PNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECK--DSVF 83 (504)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 83 (504)
+..|..-...=-.+|+.+....+.++..... .|+..+...|..=...|-..|..-.+..+....+..|+... ..+|
T Consensus 440 ~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw 519 (913)
T KOG0495|consen 440 REIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTW 519 (913)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHH
Confidence 3445444444557889999999888776541 27777888888888899999999999999999988876543 3679
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhh
Q 043204 84 ATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQ 163 (504)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (504)
..-...|.+.+.++-|..+|....+-. +.+...|......--..|..+....+|+++...- +-....|-.....+-.
T Consensus 520 ~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 520 LDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PKAEILWLMYAKEKWK 596 (913)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHh
Confidence 999999999999999999999988754 3446677777777777899999999999998652 3344556666677778
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhH
Q 043204 164 CRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQD 243 (504)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 243 (504)
.|++..|..++...-+.... +...|-.-+..-..+.+++.|..+|.+. .. ..|+...|..-+..---.+..++
T Consensus 597 agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llaka----r~--~sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKA----RS--ISGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHH----hc--cCCcchhhHHHhHHHHHhhhHHH
Confidence 89999999999999887533 6778888889999999999999999977 33 55667777766666667789999
Q ss_pred HHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043204 244 AMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMR 323 (504)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (504)
|.+++++.++. -|+-...+..+.+.+...++++.|...|..-.+.-+. .+..|-.+...--+.|.+..|..+++..+
T Consensus 670 A~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 670 ALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 99999999886 4677777888888899999999999888776654222 34555555555555689999999999999
Q ss_pred HCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCch
Q 043204 324 TKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANG 403 (504)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 403 (504)
-+++. +...|-..|++-.+.|+.+.|..+..+++++. +.+...|..-|....+.++-......+++. .-|+
T Consensus 747 lkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dp 817 (913)
T KOG0495|consen 747 LKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDP 817 (913)
T ss_pred hcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHHHHHhccCcccchHHHHHHHhc------cCCc
Confidence 88766 88899999999999999999999999877765 556667887777777777655555555543 3466
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 043204 404 ETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDI-SVWSSLVAS 482 (504)
Q Consensus 404 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~ 482 (504)
...-++...+.....++.|.+.|.+..+.+ +-+-.+|.-+...+.++|.-+.-.+++.+.... .|.. ..|.++-..
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKD 894 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhh
Confidence 777888888999999999999999999875 344678888889999999999999999988743 4554 445554443
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=3.5e-16 Score=136.75 Aligned_cols=263 Identities=16% Similarity=0.108 Sum_probs=108.1
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 043204 230 TLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNE 309 (504)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 309 (504)
.+...+.+.|++++|.+++++......+|.+..+...+...+...++.+.|...++.+...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4466666777777777777554444324555666666666777777777777777777765444 55566666665 677
Q ss_pred CChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 043204 310 GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMY 389 (504)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 389 (504)
+++++|..++....+.. ++...+...+..+...++++++.++++........+++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999888776543 4666778888889999999999999998555444556777888888899999999999999
Q ss_pred HHHHHHhcCCCC-chhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 043204 390 LKKMSKQVGCVA-NGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQA 468 (504)
Q Consensus 390 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 468 (504)
+++..+. .| |......++..+...|+.+++.++++...+.. +.|+..|..+..+|...|++++|+.++++..+..
T Consensus 169 ~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999875 45 46678889999999999999999998888764 5677788889999999999999999999988652
Q ss_pred CCCCHHHHHHHHHHHhcCCCchhHHHHHHHHhhc
Q 043204 469 KLPDISVWSSLVASVCCNTADLNVCRKTLEQLSS 502 (504)
Q Consensus 469 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 502 (504)
+.|+.....+..++...|. .++|.++.+++.+
T Consensus 245 -p~d~~~~~~~a~~l~~~g~-~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGR-KDEALRLRRQALR 276 (280)
T ss_dssp -TT-HHHHHHHHHHHT------------------
T ss_pred -ccccccccccccccccccc-ccccccccccccc
Confidence 3356666777777666666 9999998887654
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=2.5e-16 Score=137.63 Aligned_cols=228 Identities=17% Similarity=0.178 Sum_probs=89.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcC--CCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKY--PNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
.+...+.+.|++++|+++++...... |+ +...|..+...+...++++.|.+.++++...+ +-++..+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~---~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPD---DPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccc-ccccccccccccc-
Confidence 45677778888888888886554432 22 55555566666777788888888888888776 4456667777777
Q ss_pred HhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHH
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLA 170 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 170 (504)
...+++++|.+++....+.. ++...+..++..+.+.++++++..+++.+......+++...|..+...+.+.|+.++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 67888888888887765543 3445566777788888888888888888776555556777788888888888888888
Q ss_pred HHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHH
Q 043204 171 LHVFQEMDFQGCYP-DRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILE 249 (504)
Q Consensus 171 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (504)
++.+++..+. .| |....+.++..+...|+.+++.++++.. .... +.|...+..+..+|...|+.++|..+|+
T Consensus 166 ~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~----~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 166 LRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRL----LKAA-PDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH----HHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHH----HHHC-cCHHHHHHHHHHHhcccccccccccccc
Confidence 8888888876 34 4667778888888888888888877776 3322 3345567778888888888888888888
Q ss_pred HHHHc
Q 043204 250 KILRK 254 (504)
Q Consensus 250 ~~~~~ 254 (504)
+..+.
T Consensus 239 ~~~~~ 243 (280)
T PF13429_consen 239 KALKL 243 (280)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 88775
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=4.1e-13 Score=116.27 Aligned_cols=419 Identities=13% Similarity=0.007 Sum_probs=250.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcc-hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHN-GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARA 93 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
..-|-++|++++|++.|.++.+..| + +.-|.....+|...|+|+++.+--....+.. +.-+-.+..-.+++-..
T Consensus 122 GN~~f~~kkY~eAIkyY~~AI~l~p----~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQAIELCP----DEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCC----CCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhh
Confidence 4456678899999999999998744 5 6778888888889999999998888887765 33344577777888888
Q ss_pred CChhHHHHHHHHhh-hCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHH
Q 043204 94 GQLNEAVSLFKNLS-QFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALH 172 (504)
Q Consensus 94 ~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 172 (504)
|++++|+.=..-.. -.|... ..+ ..++.-..+.--...+.+-+. ..+.++-|+....++....+...
T Consensus 197 g~~~eal~D~tv~ci~~~F~n-~s~-~~~~eR~Lkk~a~~ka~e~~k--~nr~p~lPS~~fi~syf~sF~~~-------- 264 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQN-ASI-EPMAERVLKKQAMKKAKEKLK--ENRPPVLPSATFIASYFGSFHAD-------- 264 (606)
T ss_pred ccHHHHHHhhhHHHHhhhccc-chh-HHHHHHHHHHHHHHHHHHhhc--ccCCCCCCcHHHHHHHHhhcccc--------
Confidence 88888754322211 111111 110 011111111111111111111 12444556644333333322110
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHhhCCCCc---C------HHHHHHHHHHHHhc
Q 043204 173 VFQEMDFQGCYPDRESYHILMKGLCN-----DRRLNEATHLLYSMFWRISQKGSGE---D------IVIYRTLLFALCDQ 238 (504)
Q Consensus 173 ~~~~~~~~~~~p~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~---~------~~~~~~l~~~~~~~ 238 (504)
.......+...+...+..++.. ...+..|.+.+.+-... ....... | ..+.......+.-.
T Consensus 265 ----~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~-~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 265 ----PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLG-SESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred ----ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhh-hhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 0000000011111111111110 11233333332221000 0000000 1 11222222234456
Q ss_pred CchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 043204 239 GKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKV 318 (504)
Q Consensus 239 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 318 (504)
|+.-.|..-|+..+..... ....+..+...+....+.+...+.|......++. ++.+|..-.....-.+++++|..-
T Consensus 340 g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred CCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 7888888888888876433 3333555677778888888888888888877665 566666666677777889999999
Q ss_pred HHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 043204 319 LDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVG 398 (504)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 398 (504)
|++.++..+. +...|-.+.-+..+.+.++++...|++...+. +..+..|+.....+...++++.|.+.|+...+.
T Consensus 417 F~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-- 491 (606)
T KOG0547|consen 417 FQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL-- 491 (606)
T ss_pred HHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--
Confidence 9998886533 55666666666778889999999999855553 445667888888899999999999999988754
Q ss_pred CCCc---------hhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 399 CVAN---------GETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 399 ~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
.|+ +.+-.+++-.-. .+++..|..++++..+.+ +-....|..|...-...|+.++|+++|++...
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333 222233332223 388999999999998864 33456788888888999999999999998764
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=3.6e-13 Score=123.98 Aligned_cols=297 Identities=12% Similarity=0.027 Sum_probs=181.9
Q ss_pred hccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHH
Q 043204 56 SESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAH 135 (504)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 135 (504)
...|+++.|.+.+.+..+.. +-+...+-....+..+.|+++.|.+.+....+....+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 45799999999998887764 22333455566778888999999999999876543333334444577888899999999
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHH-HHHHHH---HhcCCHHHHHHHHHH
Q 043204 136 ILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYH-ILMKGL---CNDRRLNEATHLLYS 211 (504)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~---~~~~~~~~a~~~~~~ 211 (504)
..++.+....+. +...+..+...+...|+++.|.+++..+.+.++. +...+. .-..++ ...+..+++.+.+..
T Consensus 174 ~~l~~l~~~~P~--~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 174 HGVDKLLEMAPR--HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999876433 3456778888999999999999999999988654 333332 111221 223333333445555
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcC
Q 043204 212 MFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRG 291 (504)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 291 (504)
+.....+ ..+.+...+..+...+...|+.++|.+.+++..+............+....
T Consensus 251 ~~~~~p~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~--------------------- 308 (409)
T TIGR00540 251 WWKNQPR-HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIP--------------------- 308 (409)
T ss_pred HHHHCCH-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhh---------------------
Confidence 5211111 112377888888899999999999999999998864321110000111111
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcch--hhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHH
Q 043204 292 GIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSL--VMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRV 369 (504)
Q Consensus 292 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 369 (504)
....++.+.+.+.++...+..+. |+ ....++...+.+.|++++|.+.|+. .......|+...
T Consensus 309 --------------~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~-a~a~~~~p~~~~ 372 (409)
T TIGR00540 309 --------------RLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKN-VAACKEQLDAND 372 (409)
T ss_pred --------------hcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHH-hHHhhcCCCHHH
Confidence 11124444555555555443211 33 3444556666666666666666663 111112455555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 043204 370 YNILLKGLCDAGNSAVAVMYLKKMS 394 (504)
Q Consensus 370 ~~~l~~~~~~~~~~~~a~~~~~~~~ 394 (504)
+..+...+.+.|+.++|.++|++..
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666666666666543
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=2.2e-13 Score=125.32 Aligned_cols=133 Identities=16% Similarity=0.075 Sum_probs=87.1
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHH---HHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhH
Q 043204 330 SLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRV---YNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETY 406 (504)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 406 (504)
+...+..+...+...|+.++|.+++++.+... |+... ...........++.+.+.+.++...+...-.|+....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 66777777788888888888888888755543 23221 1111112233466777777777776542222221455
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHH
Q 043204 407 GILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMI 465 (504)
Q Consensus 407 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (504)
.++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67778888888888888888854443345777777788888888888888888888764
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=1e-12 Score=107.90 Aligned_cols=290 Identities=15% Similarity=0.071 Sum_probs=185.2
Q ss_pred cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcch--HHHHHHHHHHHhhcCCHHHH
Q 043204 93 AGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSR--IQSLNLLMDVLCQCRRSDLA 170 (504)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a 170 (504)
+++.++|..+|-+|.+.+ +.+..+..+|.+.|-+.|.+|.|+++.+.+..+++..-+ ......|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 356777777777777644 233455567777777777777777777777766544333 23344566677778888888
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC----HHHHHHHHHHHHhcCchhHHHH
Q 043204 171 LHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED----IVIYRTLLFALCDQGKIQDAMQ 246 (504)
Q Consensus 171 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~ 246 (504)
+++|..+.+.+ ..-......|+..|-...+|++|.++-+++ .+.+..+. ...|..+...+....+.+.|..
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L----~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERL----VKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 88888887654 224456677788888888888888887766 44444433 2345666666667778888888
Q ss_pred HHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043204 247 ILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKG 326 (504)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (504)
++.+..+. .|.......++.......|+++.|.+.++.+.+.++.--..+...+..+|.+.|+.++....+..+.+..
T Consensus 202 ~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 202 LLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888776 3555666666667777777777777777777766555555666777777777788888887777777653
Q ss_pred CCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 043204 327 FWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCD---AGNSAVAVMYLKKMSK 395 (504)
Q Consensus 327 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 395 (504)
..+ ..-..+...-....-.+.|...+.+-+.+ +|+...+..+|..-.. .|...+...+++.|..
T Consensus 280 ~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 TGA--DAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 322 22233333333344455555555442433 5777777777765433 2334555555555544
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=1.4e-12 Score=119.36 Aligned_cols=149 Identities=18% Similarity=0.097 Sum_probs=97.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHH
Q 043204 308 NEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAV 387 (504)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 387 (504)
...+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++... . +|+.... ++.+....++.+++.
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~--~~~~~l~--~l~~~l~~~~~~~al 314 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-R--QYDERLV--LLIPRLKTNNPEQLE 314 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-c--CCCHHHH--HHHhhccCCChHHHH
Confidence 334455555555555433 233666777777777888888888888777444 2 3443221 223334557777777
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 388 MYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 388 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
+..+...+. .+-|...+.++...|.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 315 ~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 315 KVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777764 2334455667777788888888888888877775 37777777777778888888888777777653
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=1.1e-12 Score=120.11 Aligned_cols=284 Identities=12% Similarity=0.046 Sum_probs=177.3
Q ss_pred cCChhHHHHHHHHhhcCCCCccHHH-HHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHH
Q 043204 58 SNRITEMKEVIDQMKGDSCECKDSV-FATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHI 136 (504)
Q Consensus 58 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 136 (504)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.|.++.+....+...........+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888888887765542 22333 333345557888888898888888765433322222233667788888888888
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHH
Q 043204 137 LFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDR-------ESYHILMKGLCNDRRLNEATHLL 209 (504)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~ 209 (504)
.++++.+..+- +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~P~--~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVAPR--HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888765433 3456677888888888999998888888877644222 12233333333444445555555
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHH
Q 043204 210 YSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALI 289 (504)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (504)
+.. ... .+.+......+...+...|+.++|.+++++..+..
T Consensus 253 ~~l----p~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~---------------------------------- 293 (398)
T PRK10747 253 KNQ----SRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ---------------------------------- 293 (398)
T ss_pred HhC----CHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------------------------------
Confidence 544 221 23467777888888888888888888888877642
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHH
Q 043204 290 RGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRV 369 (504)
Q Consensus 290 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 369 (504)
++.... ++.+....++.+++.+..+...+..+. |......+...+.+.+++++|.+.|+..+.. .|+...
T Consensus 294 ----~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~ 363 (398)
T PRK10747 294 ----YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYD 363 (398)
T ss_pred ----CCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH
Confidence 122111 112222336666666666666655332 4555666666666677777777776663332 466666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 043204 370 YNILLKGLCDAGNSAVAVMYLKKMS 394 (504)
Q Consensus 370 ~~~l~~~~~~~~~~~~a~~~~~~~~ 394 (504)
+..+...+.+.|+.++|.+++++-.
T Consensus 364 ~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 364 YAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666777777766666654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.1e-11 Score=105.30 Aligned_cols=259 Identities=12% Similarity=0.039 Sum_probs=142.3
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC--CcCHHHHHHHHHHH
Q 043204 158 MDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGS--GEDIVIYRTLLFAL 235 (504)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~ 235 (504)
..++-.....+++..-.+.....|++-+...-+....+.....++++|+.+|+++ .+..+ --|..+|..++ |
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei----~knDPYRl~dmdlySN~L--Y 307 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEI----RKNDPYRLDDMDLYSNVL--Y 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH----HhcCCCcchhHHHHhHHH--H
Confidence 3444555566666666666666666544444444445555667777777777777 33211 12455665554 3
Q ss_pred HhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 043204 236 CDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEG 315 (504)
Q Consensus 236 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 315 (504)
.+..+-. +.++.+-.. .+.--...+..++...+.-.++.+.|...|++.++.++. ....|+.+..-|....+...|
T Consensus 308 v~~~~sk--Ls~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 308 VKNDKSK--LSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred HHhhhHH--HHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHH
Confidence 3322211 111111110 011112223334455556666666666666666655443 445555555566666666666
Q ss_pred HHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043204 316 DKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSK 395 (504)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 395 (504)
+.-++...+-++. |-..|-.|.++|.-.+...-|+-.|+++..-. +-|...|.+|..+|.+.++.++|++.|.....
T Consensus 384 i~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 384 IESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 6666666665432 55666666666666666666666666533332 34556666666666666666666666666655
Q ss_pred hcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 396 QVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 396 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
- +- .+...+..|.+.|-+.++.++|...|++..+
T Consensus 461 ~-~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 461 L-GD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred c-cc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3 21 2445566666666666666666666665554
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.63 E-value=1.7e-12 Score=120.44 Aligned_cols=250 Identities=12% Similarity=0.080 Sum_probs=167.7
Q ss_pred HHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 043204 30 IFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQF 109 (504)
Q Consensus 30 ~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (504)
++-.+... |+.|+..||..+|.-|+..|+.+.|- +|..|.-...+.+...++.++....+.++.+.+.
T Consensus 12 fla~~e~~--gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 12 FLALHEIS--GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred HHHHHHHh--cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 44555555 78888888888888888888888887 8888887777777778888888888888777665
Q ss_pred CCCccHHHHHHHHHHHHhcchHHH---HHHHHHHhh--------------------cCCCCcchHHHHHHHHHHHhhcCC
Q 043204 110 NCVNWTQSFNTLLKEMVKESKLEA---AHILFLRSC--------------------YGWEVKSRIQSLNLLMDVLCQCRR 166 (504)
Q Consensus 110 ~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~--------------------~~~~~~~~~~~~~~l~~~~~~~~~ 166 (504)
.|.+.+|..|..+|...||+.. ..+.+..+. ..++..||.. ..+......|-
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~egl 154 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGL 154 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHH
Confidence 5667788888888888887654 222121111 1112223322 22333344566
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHH
Q 043204 167 SDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQ 246 (504)
Q Consensus 167 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 246 (504)
++.+++++..+....-. . ++-..++-+..... ...++.... ....-.|++.+|..++.+-...|+.+.|..
T Consensus 155 waqllkll~~~Pvsa~~-~--p~~vfLrqnv~~nt--pvekLl~~c----ksl~e~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNT--PVEKLLNMC----KSLVEAPTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHhhCCccccc-c--hHHHHHHHhccCCc--hHHHHHHHH----HHhhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 66666666555432111 1 11112444433322 223333322 111115889999999999999999999999
Q ss_pred HHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 043204 247 ILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNE 309 (504)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 309 (504)
++.+|.+.|++.....++.++.. .++...++.+++-|.+.|+.|+..|+...+..+...
T Consensus 226 ll~emke~gfpir~HyFwpLl~g----~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG----INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc----CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 99999999998888877777766 788888889999999999999999988877766663
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=4.2e-12 Score=104.36 Aligned_cols=225 Identities=14% Similarity=0.067 Sum_probs=137.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCcc---HHHHHHHHHHHHhcCChh
Q 043204 21 QKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECK---DSVFATAIRTYARAGQLN 97 (504)
Q Consensus 21 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 97 (504)
.+++++|..+|-.|.+..|. +..+-.+|.+.|-+.|..+.|+.+.+.+.+..--+. ..+...|.+-|...|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 45667777777777776554 555566677777777777777777777665321111 123445556667777777
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcch---HHHHHHHHHHHhhcCCHHHHHHHH
Q 043204 98 EAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSR---IQSLNLLMDVLCQCRRSDLALHVF 174 (504)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 174 (504)
.|+.+|..+.+.+... ......|+..|....+|++|+.+-+++....+.+-+ ...|.-|...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~efa-~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGEFA-EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchhhh-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 7777777776644222 345566777777777777777777666543322222 223444555555566777777777
Q ss_pred HHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 175 QEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 175 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
.+..+.+.+ .+..=-.+-+.....|+++.|.+.++.+ .+.+..--..+...|..+|.+.|+.++...++..+.+.
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v----~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERV----LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHH----HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 776665321 2223333445666777777777777766 45544444556666777777777777777777766654
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.1e-10 Score=100.93 Aligned_cols=383 Identities=12% Similarity=-0.036 Sum_probs=248.3
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHH-HHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSF-NTLL 122 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll 122 (504)
|...+......+-+.|....|...|......- |-.=..|..|..... +.+.+..+-..+.. .+...- --+.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~~e~~~~l~~~l~~----~~h~M~~~F~~ 234 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---DIEILSILVVGLPS----DMHWMKKFFLK 234 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---hHHHHHHHHhcCcc----cchHHHHHHHH
Confidence 54444455556667788888888887776543 333334544444332 22222222111111 011111 1344
Q ss_pred HHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCC--CCHhhHHHHHHHHHhcC
Q 043204 123 KEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCY--PDRESYHILMKGLCNDR 200 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~ 200 (504)
.++......+++..-.+..... |.+.+...-+....+.-...|+++|+.+|+++.++..- -|..+|+.++-.-....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 5555666777777766666543 33333333344444556678888888888888876311 25567777664322211
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHH
Q 043204 201 RLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGA 280 (504)
Q Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 280 (504)
. +.++.+-.. .- .+--+.|...+.+-|+-.++.++|..+|+..++. .|.....+++++.-+....+...|
T Consensus 314 k----Ls~LA~~v~--~i--dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 314 K----LSYLAQNVS--NI--DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred H----HHHHHHHHH--Hh--ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHH
Confidence 1 122211110 11 1223457777788888888888888888888875 467777788888888888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 043204 281 KSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVK 360 (504)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (504)
...++.+++.++. |-..|-.+..+|.-.+...-|+-.|++.....+. |...|.+|.++|.+.++.++|++.|..+..-
T Consensus 384 i~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 8888888877654 7888999999999999999999999999886433 8999999999999999999999999996554
Q ss_pred CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc---C-CCCc-hhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcC
Q 043204 361 GTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQV---G-CVAN-GETYGILVDGLCRDGRFLEASRVLEEMLIRSYW 435 (504)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (504)
. ..+...+..|.+.|-+.++.++|...|++..+.. | +.|. .....-|..-+.+.+++++|.........-
T Consensus 462 ~--dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--- 536 (559)
T KOG1155|consen 462 G--DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--- 536 (559)
T ss_pred c--ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC---
Confidence 4 3456789999999999999999999999887641 2 2221 222233555667778888877665544432
Q ss_pred CCcchHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043204 436 PCVETYNVLIRGLCSIGKQYEAVMWLEEMISQ 467 (504)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (504)
.-..++|..++++..+.
T Consensus 537 ---------------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 ---------------ETECEEAKALLREIRKI 553 (559)
T ss_pred ---------------CchHHHHHHHHHHHHHh
Confidence 12345666666666643
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=3.6e-11 Score=102.09 Aligned_cols=299 Identities=18% Similarity=0.123 Sum_probs=173.2
Q ss_pred cchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043204 128 ESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATH 207 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 207 (504)
.|++..|++...+..+.. ..| ...|-.-..+--..||.+.+-+++.+..+.--.++...+-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 366666666665544331 122 233334444555566677777776666654323445555555666666677777776
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHH
Q 043204 208 LLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEA 287 (504)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 287 (504)
-++++ ...+.. +........++|.+.|++.....++..+.+.+.-.+ .....+
T Consensus 175 ~v~~l----l~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~-~e~~~l--------------------- 227 (400)
T COG3071 175 NVDQL----LEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD-EEAARL--------------------- 227 (400)
T ss_pred HHHHH----HHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh-HHHHHH---------------------
Confidence 66666 333322 455666666777777777777777777776665433 222111
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccH
Q 043204 288 LIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTV 367 (504)
Q Consensus 288 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 367 (504)
...+|..++.-....+..+.-...++..... .+-++..-.+++.-+..+|+.++|.++.++.+++. ..|+.
T Consensus 228 -------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-~D~~L 298 (400)
T COG3071 228 -------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ-WDPRL 298 (400)
T ss_pred -------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cChhH
Confidence 3345555555555555555555555555432 22345555666666777777777777777644433 34441
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHH
Q 043204 368 RVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRG 447 (504)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (504)
. ..-.+.+-++.+.-++..+.-.+..+..| ..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.++
T Consensus 299 ~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~ 370 (400)
T COG3071 299 C----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADA 370 (400)
T ss_pred H----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHH
Confidence 1 11234556666666666666555433333 56667777777777777777777766654 4777777777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCC
Q 043204 448 LCSIGKQYEAVMWLEEMISQAKLPD 472 (504)
Q Consensus 448 ~~~~g~~~~a~~~~~~~~~~~~~p~ 472 (504)
+.+.|+..+|.++.++..-.-..|+
T Consensus 371 ~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 371 LDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHcCChHHHHHHHHHHHHHhcCCC
Confidence 7777777777777777664333333
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=2.5e-11 Score=102.99 Aligned_cols=299 Identities=14% Similarity=0.058 Sum_probs=199.7
Q ss_pred cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHH
Q 043204 93 AGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALH 172 (504)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 172 (504)
.|++..|+++..+-.+.+..| ...|..-..+....|+.+.+-.++.+..+.. ..++....-+........|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHH
Confidence 488888888888877777666 5566666677777888888888888876542 23455566666777788888888888
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 043204 173 VFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKIL 252 (504)
Q Consensus 173 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 252 (504)
-++.+.+.+.. ++........+|.+.|++.....++.++ .+.+.-.+...-..=-.+| .-++++..
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L----~ka~~l~~~e~~~le~~a~---------~glL~q~~ 240 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKL----RKAGLLSDEEAARLEQQAW---------EGLLQQAR 240 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHH----HHccCCChHHHHHHHHHHH---------HHHHHHHh
Confidence 88888777543 5667777888888888888888888888 6666554432211111111 11222222
Q ss_pred HcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchh
Q 043204 253 RKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLV 332 (504)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (504)
.. ++.+.-...++..... .+.++..-.+++.-+.+.|+.++|.++..+..+++..|.
T Consensus 241 ~~--------------------~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-- 297 (400)
T COG3071 241 DD--------------------NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-- 297 (400)
T ss_pred cc--------------------ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--
Confidence 11 1111112222222211 223556666777777888888888888888888766555
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 043204 333 MYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDG 412 (504)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 412 (504)
-...-.+.+.++.+.-++..++.....+..| ..+.+|...|.+.+.+.+|...|+... ...|+..+|+.+.++
T Consensus 298 --L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~ 370 (400)
T COG3071 298 --LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADA 370 (400)
T ss_pred --HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHH
Confidence 1222345667777777777777677765555 567777788888888888888888666 457888888888888
Q ss_pred HhhcCcHHHHHHHHHHHHhcCcCCC
Q 043204 413 LCRDGRFLEASRVLEEMLIRSYWPC 437 (504)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~ 437 (504)
+.+.|+..+|.++.++....-.+|+
T Consensus 371 ~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 371 LDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHcCChHHHHHHHHHHHHHhcCCC
Confidence 8888888888888887765433444
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=9.2e-13 Score=118.75 Aligned_cols=195 Identities=16% Similarity=0.036 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHH---H
Q 043204 152 QSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYP-DRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIV---I 227 (504)
Q Consensus 152 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~ 227 (504)
.+|.++..+|.-+++.+.|++.|++..+.+ | ...+|+.+-.-+.....+|.|...|+.. +..|.. .
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~A--------l~~~~rhYnA 491 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKA--------LGVDPRHYNA 491 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhh--------hcCCchhhHH
Confidence 455555555555555555555555555432 2 3444554444455555555555555544 111222 2
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043204 228 YRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLY 307 (504)
Q Consensus 228 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 307 (504)
|.-+.-.|.+.++++.|.-.|+.+.+- .|.+......+...+.+.|..++|+.+++++...+.. |+..--.....+.
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~ 568 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILF 568 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHH
Confidence 333444555555555555555555442 3444444444455555555555555555555544433 3333333445566
Q ss_pred hcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 043204 308 NEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVK 360 (504)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (504)
..+++++|+..++++.+.- +-+...+..+...|.+.|+.+.|+.-|--++.-
T Consensus 569 ~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 6688888888888887752 225666777777888888888888777764443
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.5e-10 Score=100.74 Aligned_cols=414 Identities=11% Similarity=0.026 Sum_probs=256.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCcc-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 043204 48 YASMIGILSESNRITEMKEVIDQMKGDSCECK-DSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMV 126 (504)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (504)
+-...+-|.++|++++|++.+...++.. |+ +..|.....+|...|+++++.+.-....+.++. .+.++..-.+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 4455677889999999999999999874 66 677899999999999999999888777776522 2345555556666
Q ss_pred hcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHH--------HH-hhhCC--CCCCHhhHHHHHHH
Q 043204 127 KESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVF--------QE-MDFQG--CYPDRESYHILMKG 195 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--------~~-~~~~~--~~p~~~~~~~l~~~ 195 (504)
..|++++|+.=..-. ++...+....-.--+.+++ ++ +.+.+ +-|+.....+....
T Consensus 195 ~lg~~~eal~D~tv~--------------ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~s 260 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVL--------------CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGS 260 (606)
T ss_pred hhccHHHHHHhhhHH--------------HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhh
Confidence 777777764433222 2222222222222222222 21 22122 23444333333333
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc-CchhHHHHHHHHHHHcCCCCCc-----------chh
Q 043204 196 LCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQ-GKIQDAMQILEKILRKGLKAPK-----------SRR 263 (504)
Q Consensus 196 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~-----------~~~ 263 (504)
+...-. ..+ ...+.+-|...-..+=..+... ..+..|.+.+.+-........+ ...
T Consensus 261 F~~~~~--------~~~----~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~a 328 (606)
T KOG0547|consen 261 FHADPK--------PLF----DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEA 328 (606)
T ss_pred cccccc--------ccc----cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHH
Confidence 211000 000 0000000111000000001100 0122222222222111100000 111
Q ss_pred hhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhc
Q 043204 264 HRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFK 343 (504)
Q Consensus 264 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (504)
..+...++.-.|+.-.|..-|+..+.....++. .|-.+...|....+.++....|....+.++. ++.+|..-.+.+.-
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFL 406 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHH
Confidence 222344556678888999999999887665433 3666777899999999999999999998755 77888888888888
Q ss_pred CCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHH
Q 043204 344 DGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEAS 423 (504)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 423 (504)
.+++++|..-|++...-. +-+...|..+..+..+.+.+++++..|++..++ ++..+..|+.....+...++++.|.
T Consensus 407 L~q~e~A~aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHH
Confidence 999999999999855433 335566777777777899999999999999985 5556778898999999999999999
Q ss_pred HHHHHHHhcC-----cCCCcchH--HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCCchhHHHH
Q 043204 424 RVLEEMLIRS-----YWPCVETY--NVLIRGLCSIGKQYEAVMWLEEMISQAKLPDI-SVWSSLVASVCCNTADLNVCRK 495 (504)
Q Consensus 424 ~~~~~~~~~~-----~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~ 495 (504)
+.|+..++.. +..++..+ ..++ .+--.+++..|.+++.+..+ +.|.. ..+.+|...-...++ .++|.+
T Consensus 483 k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~-i~eAie 558 (606)
T KOG0547|consen 483 KQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGK-IDEAIE 558 (606)
T ss_pred HHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhh-HHHHHH
Confidence 9999998752 11122111 1122 11234899999999999984 45654 456666665455555 999999
Q ss_pred HHHHh
Q 043204 496 TLEQL 500 (504)
Q Consensus 496 ~~~~~ 500 (504)
+|++-
T Consensus 559 lFEks 563 (606)
T KOG0547|consen 559 LFEKS 563 (606)
T ss_pred HHHHH
Confidence 99874
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.1e-12 Score=118.30 Aligned_cols=287 Identities=13% Similarity=0.004 Sum_probs=224.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCC--CccHHHHHHHHHHHHhcCChhH
Q 043204 21 QKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSC--ECKDSVFATAIRTYARAGQLNE 98 (504)
Q Consensus 21 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 98 (504)
+-+.++|+..|+...+..++ .......+..+|...+++++|.++|+.+.+... ..+..+|.+.+-.+-+ +-
T Consensus 332 ~y~~~~A~~~~~klp~h~~n---t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v 404 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYN---TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EV 404 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hH
Confidence 44788999999998777655 557778889999999999999999999987641 2355678777755533 22
Q ss_pred HHHHHH-HhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcc-hHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 043204 99 AVSLFK-NLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKS-RIQSLNLLMDVLCQCRRSDLALHVFQE 176 (504)
Q Consensus 99 a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 176 (504)
++..+. .+.+.+ +..+.+|.++.+.|.-+++.+.|++.|++..+- .| ...+|+.+..-+.....+|.|...|+.
T Consensus 405 ~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl---dp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 405 ALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL---DPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc---CCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 333333 333333 445789999999999999999999999999854 44 678999999999999999999999999
Q ss_pred hhhCCCCCCHhhHH---HHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 043204 177 MDFQGCYPDRESYH---ILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILR 253 (504)
Q Consensus 177 ~~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 253 (504)
.+.. |+..|+ -+.-.|.+.++++.|+-.|+++ .+.+.. +.+....+...+-+.|+.++|+.+++++..
T Consensus 481 Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA----~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 481 ALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA----VEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred hhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhh----hcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 8854 555554 4566789999999999999988 454433 667777888889999999999999999987
Q ss_pred cCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcc
Q 043204 254 KGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPS 330 (504)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (504)
. .|.+.....--+..+...+++++|+..++++.+.-+. +...+..+...|-+.|+.+.|+.-|..+.+..+++.
T Consensus 552 l--d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 552 L--DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred c--CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 6 4555555555577778889999999999999876433 556677777788888999999999999988765543
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.54 E-value=1.6e-09 Score=97.67 Aligned_cols=473 Identities=10% Similarity=0.014 Sum_probs=291.6
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
|-.-++.+..+|+...-...|++++...|- ..-...|...+......+-++.+..++++..+.. +..-+..|..+
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L 179 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPV-TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCch-HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 455667778899999999999999998763 3345678899999999999999999999998653 44467778888
Q ss_pred HhcCChhHHHHHHHHhhhCC------CCccHHHHHHHHHHHHhcchHHH---HHHHHHHhhcCCCCcch--HHHHHHHHH
Q 043204 91 ARAGQLNEAVSLFKNLSQFN------CVNWTQSFNTLLKEMVKESKLEA---AHILFLRSCYGWEVKSR--IQSLNLLMD 159 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~--~~~~~~l~~ 159 (504)
+..+++++|.+.+......+ .+.+-..|..+-+..++..+.-. ...+++.... .-+| -..|++|.+
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~---rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR---RFTDQLGFLWCSLAD 256 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc---cCcHHHHHHHHHHHH
Confidence 99999999999998776432 12233445555555555433322 2334444332 2334 357899999
Q ss_pred HHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHH--
Q 043204 160 VLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDR----------------------RLNEATHLLYSMFWR-- 215 (504)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~-- 215 (504)
.|.+.|.+++|.++|++.... ..+..-|..+..+|+.-. +++-....|+.+..+
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 999999999999999988765 335555666666664321 122222233332100
Q ss_pred ------HhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCC-----CcchhhhhhccccCCCCChHHHHHHH
Q 043204 216 ------ISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKA-----PKSRRHRIDLCPCNDGEDIEGAKSLI 284 (504)
Q Consensus 216 ------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~ 284 (504)
+... .+.++..|..-+.. ..|+..+....+.+..+. +.| .......-...+|.+.|+++.|..+|
T Consensus 335 ~~lNsVlLRQ-n~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 335 LLLNSVLLRQ-NPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred hHHHHHHHhc-CCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 0000 11233344433332 345667777777777664 222 22334444577888999999999999
Q ss_pred HHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------Cc------chhhHHHHHHHHhcC
Q 043204 285 NEALIRGGIPS---LASYSAMAIDLYNEGRIVEGDKVLDEMRTKGF-----------WP------SLVMYEAKLAALFKD 344 (504)
Q Consensus 285 ~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~l~~~~~~~ 344 (504)
++..+-...-- ..+|......-.+..+++.|.++.+......- ++ +...|...++.--..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99876543211 23444444444556778888887776643211 11 223445555555567
Q ss_pred CCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhh---cCcHHH
Q 043204 345 GMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCR---DGRFLE 421 (504)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~ 421 (504)
|-++....+|++++.-.-..|.... .....+-.+.-++++.++|++-...+..+--...|+..+.-+.+ ...++.
T Consensus 491 gtfestk~vYdriidLriaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIII--NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 7888888888885554444444332 12222345566788888888766542222223467766655554 236889
Q ss_pred HHHHHHHHHhcCcCCCcchHHHHH--HHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCCchhHHHHHH
Q 043204 422 ASRVLEEMLIRSYWPCVETYNVLI--RGLCSIGKQYEAVMWLEEMISQAKLPDI--SVWSSLVASVCCNTADLNVCRKTL 497 (504)
Q Consensus 422 A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~a~~~~ 497 (504)
|..+|++..+ |.+|...-+--|+ ..=-+.|....|+.++++.... +++.. ..|+..|.-....-| +.....++
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG-v~~TR~iY 645 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG-VPRTREIY 645 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC-CcccHHHH
Confidence 9999999988 5555432222221 1222468888888888887643 44433 567777766555666 66667777
Q ss_pred HHhhc
Q 043204 498 EQLSS 502 (504)
Q Consensus 498 ~~~~~ 502 (504)
++.++
T Consensus 646 ekaIe 650 (835)
T KOG2047|consen 646 EKAIE 650 (835)
T ss_pred HHHHH
Confidence 66654
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.54 E-value=5.4e-10 Score=100.84 Aligned_cols=428 Identities=15% Similarity=0.056 Sum_probs=283.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhH
Q 043204 19 KKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNE 98 (504)
Q Consensus 19 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (504)
-..+++...+.+.+.+++..|. -..+.....-.+...|+.++|.+..+...+.+ .-+...|..+.-.+....++++
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~e---HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPE---HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCc---cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHH
Confidence 3567888999999999998776 44455444555667799999999999888876 4556678877777777889999
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q 043204 99 AVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMD 178 (504)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (504)
|++.|......+ +.+...+..+.-.-++.++++.....-....+. .+.....|..+..++.-.|+...|..++++..
T Consensus 94 aiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 94 AIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988766 445677777777778888888877776666543 22245678888888888999999999999988
Q ss_pred hCC-CCCCHhhHHHHHH------HHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 043204 179 FQG-CYPDRESYHILMK------GLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKI 251 (504)
Q Consensus 179 ~~~-~~p~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 251 (504)
+.. -.|+...|..... ...+.|..+.|.+.+... . ..+.-....-..-...+.+.+++++|..++..+
T Consensus 171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~----e-~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 171 KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN----E-KQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh----h-hHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 764 2466666654433 345678888888877655 1 111112223334566788899999999999999
Q ss_pred HHcCCCCCcchhhhhhccccC-CCCChHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCc
Q 043204 252 LRKGLKAPKSRRHRIDLCPCN-DGEDIEGAKSLINEALIRGGIPSLASYSAM-AIDLYNEGRIVEGDKVLDEMRTKGFWP 329 (504)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (504)
+.. .|++..++..+..++. -.+..+....+|....+.-.. ...-..+ +.......-.+....++..+.+.|+++
T Consensus 246 l~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r--~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 246 LER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR--HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred Hhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc--cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 987 4677777666555553 233333333555555443111 1111111 111111233344556677777788764
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHH---HHHHhcCC----------CCccHHHHH--HHHHHHHhcCChHHHHHHHHHHH
Q 043204 330 SLVMYEAKLAALFKDGMVDEALEVI---EEEMVKGT----------FVPTVRVYN--ILLKGLCDAGNSAVAVMYLKKMS 394 (504)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~---~~~~~~~~----------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 394 (504)
- +..+...|-.....+-..++. ...+...| -+|+...|+ .++..+-+.|+++.|..+++...
T Consensus 322 v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 322 V---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred h---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 3 333333332222111111111 11121111 145555444 46677889999999999999988
Q ss_pred HhcCCCCch-hhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 043204 395 KQVGCVANG-ETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAK 469 (504)
Q Consensus 395 ~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (504)
.+ .|+. ..|..=.+.+...|++++|..++++..+.+ .+|...-..-..-..++++.++|.++.....+.|.
T Consensus 399 dH---TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 399 DH---TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cc---CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 53 6654 345555688999999999999999999876 46655555666777889999999999999988775
No 56
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.3e-08 Score=91.21 Aligned_cols=456 Identities=15% Similarity=0.126 Sum_probs=262.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAG 94 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (504)
+..+...+++++|.+...+++...|+ +..++..=+-++.+.+++++|+.+.+.-.... .+...+..-.-+.-+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pd---d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPD---DEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCC---cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcc
Confidence 45566788999999999999998776 78888888889999999999997766543221 11111112223334788
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHH
Q 043204 95 QLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVF 174 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 174 (504)
..++|+..++-... .+..+...-...+.+.+++++|..+|+.+.......-+...-..++.+-.. -.+ ++.
T Consensus 94 k~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~-~~~ 164 (652)
T KOG2376|consen 94 KLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV-QLL 164 (652)
T ss_pred cHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH-HHH
Confidence 99999999883222 123344555667889999999999999997653333332222222222111 111 122
Q ss_pred HHhhhCCCCCCHhhHHHHHH---HHHhcCCHHHHHHHHHHHHHH----HhhCCCC-cCH-----HHHHHHHHHHHhcCch
Q 043204 175 QEMDFQGCYPDRESYHILMK---GLCNDRRLNEATHLLYSMFWR----ISQKGSG-EDI-----VIYRTLLFALCDQGKI 241 (504)
Q Consensus 175 ~~~~~~~~~p~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~----~~~~~~~-~~~-----~~~~~l~~~~~~~g~~ 241 (504)
+... ..| ..+|..+.+ .+...|++.+|+++++...+. +.+.... -+. .+-..+.-.+-..|+.
T Consensus 165 q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 165 QSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred Hhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 2222 233 345555443 456899999999999987321 1111111 011 1222345566778999
Q ss_pred hHHHHHHHHHHHcCCCCCcchh---hhhhccccCCCCChH-HHHHHHHHHHHcCC----------CCChhhHHHHHHHHH
Q 043204 242 QDAMQILEKILRKGLKAPKSRR---HRIDLCPCNDGEDIE-GAKSLINEALIRGG----------IPSLASYSAMAIDLY 307 (504)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~a~~~~~~~~~~~~----------~~~~~~~~~ll~~~~ 307 (504)
++|..++...++.+.. +.... .+.+..+-....-++ .++..++....... .......|..+-.+.
T Consensus 241 ~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987542 22111 111122111111111 11111111111000 001112222222221
Q ss_pred hcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhc--CCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHH
Q 043204 308 NEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFK--DGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAV 385 (504)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (504)
.+..+.+.++...... ..| ...+..++..+.+ .....++.+++.. .......-...+.-.++......|+++.
T Consensus 320 -tnk~~q~r~~~a~lp~--~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~-~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 320 -TNKMDQVRELSASLPG--MSP-ESLFPILLQEATKVREKKHKKAIELLLQ-FADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred -hhhHHHHHHHHHhCCc--cCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 1333333333322221 122 2344455544332 2357778888876 4443222234455666777889999999
Q ss_pred HHHHHH--------HHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhc--CcCCCcchHHHHH----HHHHcc
Q 043204 386 AVMYLK--------KMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIR--SYWPCVETYNVLI----RGLCSI 451 (504)
Q Consensus 386 a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~----~~~~~~ 451 (504)
|.+++. .+.+. +. .+.+...+...+.+.++.+.|..++.+.... .-.+......+++ ..-.+.
T Consensus 395 A~~il~~~~~~~~ss~~~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHhhhhhhhhhhh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 999999 44433 33 3445677778888888888888888887654 1123333344443 344578
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 043204 452 GKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQL 500 (504)
Q Consensus 452 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 500 (504)
|+-++|..+++++.+. ..+|..+...++.+|++. |++.|..+-+.+
T Consensus 472 G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~--d~eka~~l~k~L 517 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL--DPEKAESLSKKL 517 (652)
T ss_pred CchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc--CHHHHHHHhhcC
Confidence 9999999999999975 367889999999998887 578887766554
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.3e-10 Score=101.49 Aligned_cols=285 Identities=9% Similarity=-0.061 Sum_probs=210.8
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHH
Q 043204 112 VNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHI 191 (504)
Q Consensus 112 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 191 (504)
.-+......-.+-+...+++.+..++++...+..++.++ .+..-|.++...|+..+-..+=.++.+.- +-.+.+|-+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~--~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLP--CLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcc--hHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 334455566666777888999999999998887666555 44555668888888888777777777763 235678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccc
Q 043204 192 LMKGLCNDRRLNEATHLLYSMFWRISQKGSGED-IVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCP 270 (504)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (504)
+.--|...|+..+|.+.|.+. ..+.|. ...|-.....|.-.|..++|+..+...-+. -+........+..-
T Consensus 318 Vg~YYl~i~k~seARry~SKa------t~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKA------TTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGME 389 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHH------hhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHH
Confidence 888888889999999999866 223333 457888888899999999999988887664 34445555555666
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC----cchhhHHHHHHHHhcC
Q 043204 271 CNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTK--GFW----PSLVMYEAKLAALFKD 344 (504)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~ 344 (504)
|.+.++.+.|.++|.+.....+. |+...+.+.-.....+.+.+|..+|+..... .+. .-..+++.|.++|.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 77888899999999888876544 6667777766666778888998888877632 011 1234577888888899
Q ss_pred CCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 043204 345 GMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGL 413 (504)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 413 (504)
+.+++|+..+++++... +.+..++.++.-.|...|+++.|.+.|++.. .+.|+..+...++..+
T Consensus 469 ~~~~eAI~~~q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLKLA 532 (611)
T ss_pred hhHHHHHHHHHHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHHHH
Confidence 99999999998877665 5577788888888888999999999998877 5688876666666543
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=6.1e-11 Score=113.54 Aligned_cols=148 Identities=10% Similarity=-0.092 Sum_probs=64.0
Q ss_pred hhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHH
Q 043204 61 ITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLR 140 (504)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 140 (504)
+++|...+++..+.+ +.+..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555555555444 3344444444444455555555555555554443 12233444444445555555555555555
Q ss_pred hhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 141 SCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
.....+..+. .+..++..+...|++++|...+++..+...+-+...+..+..++...|++++|...+.++
T Consensus 398 Al~l~P~~~~--~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 398 CLKLDPTRAA--AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHhcCCCChh--hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4433222111 111222223334445555555544443221112223333444444455555555554443
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=1.4e-11 Score=114.48 Aligned_cols=276 Identities=13% Similarity=0.108 Sum_probs=178.8
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCC
Q 043204 66 EVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGW 145 (504)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 145 (504)
.++-.+...|+.|+..+|..+|.-|+..|+.+.|- +|..|.-...+.....++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667788899999999999999999999999999 9999988888888888999999888888876543
Q ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCH
Q 043204 146 EVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDI 225 (504)
Q Consensus 146 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (504)
.|...+|..|..+|...||... |+...+ -...+...+...|.-.....++..+. ...+.-||.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~---c~p~~lpda 142 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIH---CCPHSLPDA 142 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcc---cCcccchhH
Confidence 5677899999999999999766 222221 11122223334444333334433321 222333343
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 043204 226 VIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAID 305 (504)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 305 (504)
.+ .+.-..-.|-++.+++++..+.......+... .+-..-....+++.-..+.+...+ .|+..+|..++..
T Consensus 143 ~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~ 213 (1088)
T KOG4318|consen 143 EN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKR 213 (1088)
T ss_pred HH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHH---HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHH
Confidence 32 22223344555555555544432211111111 112222222233333333333332 4788888888888
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC
Q 043204 306 LYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGN 382 (504)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (504)
-...|+.+.|..++.+|.+.|++.+..-|..|+-+ .++...+..++.. |...|+.|+..|+...+..+..+|.
T Consensus 214 alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrg-mqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 214 ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRG-MQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHH-HHHhcCCCCcchhHHHHHhhhcchh
Confidence 88888888888888888888888787777777755 6777777777775 8888888888888877777766554
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=4.1e-11 Score=102.51 Aligned_cols=202 Identities=14% Similarity=0.022 Sum_probs=153.9
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++...+... .+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 35567777888888889999998888887765 55567778888888888999999988888877653 33556777788
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLN 203 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 203 (504)
.+...|++++|...+++.......+.....+..+..++...|++++|.+.+++...... .+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHH
Confidence 88888899999888888876433333445667777888888999999999988877532 24567778888888899999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 043204 204 EATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILR 253 (504)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 253 (504)
+|...+++. ... .+.+...+..+...+...|+.+.|..+.+.+..
T Consensus 187 ~A~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERY----QQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHH----HHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999998887 333 233566666777888888888888888777654
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=1.3e-09 Score=91.25 Aligned_cols=430 Identities=11% Similarity=0.024 Sum_probs=253.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHH-HHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMI-GILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARA 93 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
+.-+....++..|+.+++.-...... .....+..| .++...|++++|...+..+.... .++...+-.|..++.-.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E---EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE---EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh---hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHH
Confidence 45566677888899888877654211 122333334 45567899999999998888766 67777787788777788
Q ss_pred CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHH
Q 043204 94 GQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHV 173 (504)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 173 (504)
|.+.+|..+-....+.. -.-..+.....+.++-++-..+.+.+... ..---+|.+.....-.+.+|+++
T Consensus 105 g~Y~eA~~~~~ka~k~p-----L~~RLlfhlahklndEk~~~~fh~~LqD~------~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPKTP-----LCIRLLFHLAHKLNDEKRILTFHSSLQDT------LEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHHHHHHhhCCCCh-----HHHHHHHHHHHHhCcHHHHHHHHHHHhhh------HHHHHhHHHHHHHHHHHHHHHHH
Confidence 88888888766554321 12234444555666666665555554322 11123344444444567888888
Q ss_pred HHHhhhCCCCCCHhhHHHHH-HHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh--cCchhH-------
Q 043204 174 FQEMDFQGCYPDRESYHILM-KGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCD--QGKIQD------- 243 (504)
Q Consensus 174 ~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~------- 243 (504)
+.+.... .|+-...|.-+ -+|.+..-++-+.++++-.. +. ++.+....|..+....+ .|+..+
T Consensus 174 YkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL----~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 174 YKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYL----RQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH----Hh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 8887765 34444444433 34556666777777766553 21 11122233322222111 111111
Q ss_pred -----HHHHHHHHHHcCC------------CC----CcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 043204 244 -----AMQILEKILRKGL------------KA----PKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAM 302 (504)
Q Consensus 244 -----a~~~~~~~~~~~~------------~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 302 (504)
-....+.+.+.++ -| ..+.....++-.+.+.+++.+|..+.+++... .|-......+
T Consensus 247 dN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgv 324 (557)
T KOG3785|consen 247 DNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGV 324 (557)
T ss_pred hcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHH
Confidence 0112222222211 00 01122333566788999999999988877421 1222222222
Q ss_pred HHHH-Hh----cCChhHHHHHHHHHHHCCCCcch-hhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 043204 303 AIDL-YN----EGRIVEGDKVLDEMRTKGFWPSL-VMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKG 376 (504)
Q Consensus 303 l~~~-~~----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (504)
..+- .+ ...+.-|.+.|+-.-+++..-|. .--.++..++.-..++++++-.++. ++..-...|.+.+| +.++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS-i~sYF~NdD~Fn~N-~AQA 402 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS-IESYFTNDDDFNLN-LAQA 402 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcchhhhH-HHHH
Confidence 2111 11 13345566667666665544333 2335666777777889999988887 77665555555554 6788
Q ss_pred HHhcCChHHHHHHHHHHHHhcCCCCchhhH-HHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcch-HHHHHHHHHccCCH
Q 043204 377 LCDAGNSAVAVMYLKKMSKQVGCVANGETY-GILVDGLCRDGRFLEASRVLEEMLIRSYWPCVET-YNVLIRGLCSIGKQ 454 (504)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~ 454 (504)
++..|++.+|+++|-.+... .++ |..+| ..|.++|.+++.++.|+.++-++.. +.+..+ ...+...|.+.+.+
T Consensus 403 k~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888643 333 45555 4566889999999999877655433 223333 33445678888988
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH
Q 043204 455 YEAVMWLEEMISQAKLPDISVWS 477 (504)
Q Consensus 455 ~~a~~~~~~~~~~~~~p~~~~~~ 477 (504)
--|.+.|+.+.. ..|++..|.
T Consensus 478 yyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 478 YYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HHHHHhhhHHHc--cCCCccccC
Confidence 888888888874 456665553
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=3.1e-11 Score=103.29 Aligned_cols=196 Identities=12% Similarity=0.021 Sum_probs=165.2
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT 89 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
.+..+...+...|++++|...|+++.+..|. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPD---DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3566778889999999999999999988776 67888899999999999999999999999876 5667788889999
Q ss_pred HHhcCChhHHHHHHHHhhhCCCC-ccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHH
Q 043204 90 YARAGQLNEAVSLFKNLSQFNCV-NWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSD 168 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 168 (504)
+...|++++|.+.|+...+.... .....+..+...+...|++++|...+++.....+ .+...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--QRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CChHHHHHHHHHHHHcCCHH
Confidence 99999999999999998865322 2345667788889999999999999999876532 24557788889999999999
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 169 LALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 169 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
+|...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999998876 2446677778888888999999999988776
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=2.5e-08 Score=90.35 Aligned_cols=424 Identities=13% Similarity=0.065 Sum_probs=280.5
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCh
Q 043204 17 IIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQL 96 (504)
Q Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (504)
.+...|+.++|....+...+.+++ +...|..+.-.+....++++|+++|......+ +.|...+.-+.-.-++.|++
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~---S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLK---SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcc---cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhh
Confidence 455678999999999999988665 77889888888888899999999999999988 78888888877777888899
Q ss_pred hHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHH------HHHhhcCCHHHH
Q 043204 97 NEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLM------DVLCQCRRSDLA 170 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~a 170 (504)
+.....-....+... .....|..+..++.-.|+...|..+++.........|+...+.-.. ....+.|..+.|
T Consensus 126 ~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a 204 (700)
T KOG1156|consen 126 EGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA 204 (700)
T ss_pred hhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 998888888877653 2355778888888889999999999998876654445544443332 235667888888
Q ss_pred HHHHHHhhhCCCCCCHhhH-HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHH-HHHHHHHhcCchhHHH-HH
Q 043204 171 LHVFQEMDFQGCYPDRESY-HILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYR-TLLFALCDQGKIQDAM-QI 247 (504)
Q Consensus 171 ~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~-~~ 247 (504)
.+.+..-... ..|...+ .+-...+.+.+++++|..++..+ ... .||..-|. .+..++.+..+.-++. .+
T Consensus 205 le~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L----l~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 205 LEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRL----LER--NPDNLDYYEGLEKALGKIKDMLEALKAL 276 (700)
T ss_pred HHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH----Hhh--CchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8877665543 1233332 33456678899999999999988 443 34555444 4455554343433444 56
Q ss_pred HHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH---
Q 043204 248 LEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRT--- 324 (504)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--- 324 (504)
|....+. .|.......+-+.......-.+..-.++....+.|+.+ ++..+...|-.....+-..++.-.+..
T Consensus 277 y~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~ 351 (700)
T KOG1156|consen 277 YAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLS 351 (700)
T ss_pred HHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcc
Confidence 6655443 22222333332333344444455556667777777653 334433333222222211122211111
Q ss_pred -CC----------CCcchhhHH--HHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHH-HHHHHHHHHHhcCChHHHHHHH
Q 043204 325 -KG----------FWPSLVMYE--AKLAALFKDGMVDEALEVIEEEMVKGTFVPTVR-VYNILLKGLCDAGNSAVAVMYL 390 (504)
Q Consensus 325 -~~----------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 390 (504)
.| -+|....|+ .++..|-+.|+++.|...++.++.. .|+.+ .|..=.+.+...|++++|..++
T Consensus 352 ~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 352 GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 11 144544444 5677888999999999999975543 45543 4555557788999999999999
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcch--------HHHH--HHHHHccCCHHHHHHH
Q 043204 391 KKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVET--------YNVL--IRGLCSIGKQYEAVMW 460 (504)
Q Consensus 391 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------~~~l--~~~~~~~g~~~~a~~~ 460 (504)
++..+. -.||...-.--..-..++++.++|.++.......|. +... |-.+ ..+|.+.|++..|++-
T Consensus 429 ~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKk 504 (700)
T KOG1156|consen 429 DEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKK 504 (700)
T ss_pred HHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHH
Confidence 998864 345665555666667788999999999998888764 2221 2222 2467888888887766
Q ss_pred HHHHH
Q 043204 461 LEEMI 465 (504)
Q Consensus 461 ~~~~~ 465 (504)
|....
T Consensus 505 fh~i~ 509 (700)
T KOG1156|consen 505 FHEIE 509 (700)
T ss_pred HhhHH
Confidence 55543
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.4e-09 Score=96.63 Aligned_cols=449 Identities=11% Similarity=-0.012 Sum_probs=296.0
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT 89 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
-+..+.+-+..+.++.-|+-+-+++... +. |+..---+++++.-.|+++.|..++..-.-. ..|..+......+
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l--~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGL--TN--DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhc--cC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHH
Confidence 3455666666777888888888888765 32 4444445667777777788887777654322 4566677777777
Q ss_pred HHhcCChhHHHHHHH----Hhh----------------hCC----CCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCC
Q 043204 90 YARAGQLNEAVSLFK----NLS----------------QFN----CVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGW 145 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~----~~~----------------~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 145 (504)
+.+..+++.|..++. .+. ..+ .......+-.-...|....+.++|...|.+....
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~- 170 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA- 170 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc-
Confidence 777778888777777 110 001 1111222222234555666677777777665432
Q ss_pred CCcchHHHHHH---HHHHHhh-----------------c-CCHHHHHHHHHHh----hh------------CCCCCCHhh
Q 043204 146 EVKSRIQSLNL---LMDVLCQ-----------------C-RRSDLALHVFQEM----DF------------QGCYPDRES 188 (504)
Q Consensus 146 ~~~~~~~~~~~---l~~~~~~-----------------~-~~~~~a~~~~~~~----~~------------~~~~p~~~~ 188 (504)
|+..+.. ++....- . .+.+.-..+|+-. .. .+..-+...
T Consensus 171 ----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 171 ----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred ----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 2222221 1111100 1 1112222222211 00 012223333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhc
Q 043204 189 YHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDL 268 (504)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 268 (504)
...-..-+...+++.+..++.+..+ .. .++....+..-|.++...|+..+-..+=.++.+. -|.....+..++
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~ll---e~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg 319 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELL---EK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVG 319 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHH---hh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHH
Confidence 4444455667888999999888874 22 2344555666677888888888888777888775 566777777778
Q ss_pred cccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHH
Q 043204 269 CPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVD 348 (504)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (504)
..|...|...+|.+.|.+....+.. =...|-.+...++..+..++|+..+...-+.=. -...-+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~-G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP-GCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHhccHH
Confidence 8888889999999999888765433 345677888888888999999998887766311 11122233445678889999
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCC----chhhHHHHHHHHhhcCcHHHHH
Q 043204 349 EALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVG-CVA----NGETYGILVDGLCRDGRFLEAS 423 (504)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~A~ 423 (504)
.|.+.|.+++... +.|+...+-+.-.....+.+.+|..+|+.....-. +.+ -..+++.|..+|.+.+.+++|.
T Consensus 398 LAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999998866654 45666677666666778899999999998763211 111 2345788999999999999999
Q ss_pred HHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043204 424 RVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASV 483 (504)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 483 (504)
..+++..... +.+..++.++.-.|...|+++.|.+.|.+.+ .+.|+..+...++..+
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 9999998864 6788899999999999999999999999998 7789998888877754
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=6.6e-08 Score=87.63 Aligned_cols=222 Identities=9% Similarity=0.054 Sum_probs=114.7
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhc
Q 043204 231 LLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSL-ASYSAMAIDLYNE 309 (504)
Q Consensus 231 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~ 309 (504)
.++.--..|-++....+++.++...+..|....+ ...++....-++++.+++++-+..-..|+. ..|++.+.-+.+.
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~N--yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIIN--YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 3333334456666666666666654432222221 122334444556666666555444333433 3455555444443
Q ss_pred ---CChhHHHHHHHHHHHCCCCcchhhHHHHHH--HHhcCCCHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHhcCC
Q 043204 310 ---GRIVEGDKVLDEMRTKGFWPSLVMYEAKLA--ALFKDGMVDEALEVIEEEMVKGTFVPT--VRVYNILLKGLCDAGN 382 (504)
Q Consensus 310 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 382 (504)
..++.|..+|++..+ |++|...-+--|+- .--+.|....|+.+++++-.. +++. ...|+..|.--+..=-
T Consensus 561 ygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~--v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA--VKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred hcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHhC
Confidence 457777777777777 55543322222221 112346667777777763222 2222 2356666654444434
Q ss_pred hHHHHHHHHHHHHhcCCCCchhhHH---HHHHHHhhcCcHHHHHHHHHHHHhc-CcCCCcchHHHHHHHHHccCCHHHHH
Q 043204 383 SAVAVMYLKKMSKQVGCVANGETYG---ILVDGLCRDGRFLEASRVLEEMLIR-SYWPCVETYNVLIRGLCSIGKQYEAV 458 (504)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 458 (504)
+.....+|++..+. -|+...-. -..+.-.+.|.+++|..++.-..+- .-..+...|.+.=.-=.++|+-+...
T Consensus 638 v~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~k 714 (835)
T KOG2047|consen 638 VPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYK 714 (835)
T ss_pred CcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHH
Confidence 45556667666653 34433322 2334445678888888888766553 11224455766666667788844444
Q ss_pred HH
Q 043204 459 MW 460 (504)
Q Consensus 459 ~~ 460 (504)
++
T Consensus 715 eM 716 (835)
T KOG2047|consen 715 EM 716 (835)
T ss_pred HH
Confidence 43
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.41 E-value=1.6e-08 Score=93.83 Aligned_cols=292 Identities=10% Similarity=0.048 Sum_probs=191.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc-
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARA- 93 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 93 (504)
..++...|++++|++.++.....-+ .....+......+.+.|+.++|..++..+.+.+ |.|..-|..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~---Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQIL---DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 4567889999999999988776533 256667788899999999999999999999987 44444455555555322
Q ss_pred ----CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHH-HHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHH
Q 043204 94 ----GQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEA-AHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSD 168 (504)
Q Consensus 94 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 168 (504)
.+.+...++|+++.+.- |...+...+.-.+.....+.. +...+.....+ |+++ +|+.|-..|....+.+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHcChhHHH
Confidence 25677788888887654 222222222222222233433 33334444433 4443 5677777777666666
Q ss_pred HHHHHHHHhhhC----C----------CCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC-HHHHHHH
Q 043204 169 LALHVFQEMDFQ----G----------CYPDR--ESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED-IVIYRTL 231 (504)
Q Consensus 169 ~a~~~~~~~~~~----~----------~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l 231 (504)
-..+++...... + -.|+. .++..+...|...|++++|++++++. ... .|+ +..|..-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a----I~h--tPt~~ely~~K 234 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA----IEH--TPTLVELYMTK 234 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH----Hhc--CCCcHHHHHHH
Confidence 666666655432 1 12333 34566677788899999999999877 444 344 6678888
Q ss_pred HHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhh--------HHHHH
Q 043204 232 LFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLAS--------YSAMA 303 (504)
Q Consensus 232 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~ll 303 (504)
.+.+-+.|++.+|.+.++..... .+.+...++-....+.+.|+++.|.+++......+..|-... .....
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a 312 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECA 312 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH
Confidence 88899999999999999988775 446666677777777788888888888877776654332211 12334
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 043204 304 IDLYNEGRIVEGDKVLDEMRT 324 (504)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~ 324 (504)
.+|.+.|++..|+..|..+.+
T Consensus 313 ~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 313 EAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 566666777777766655544
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=7.1e-13 Score=80.86 Aligned_cols=50 Identities=34% Similarity=0.687 Sum_probs=38.2
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043204 149 SRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCN 198 (504)
Q Consensus 149 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 198 (504)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57777777777777777777777777777777777777777777777653
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=2.1e-09 Score=99.47 Aligned_cols=299 Identities=13% Similarity=0.093 Sum_probs=175.8
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc-
Q 043204 50 SMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKE- 128 (504)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~- 128 (504)
-....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.++ .+..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhc
Confidence 3446678899999999999876544 244556678888999999999999999999999873 2233444444444222
Q ss_pred ----chHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCH-HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043204 129 ----SKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRS-DLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLN 203 (504)
Q Consensus 129 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 203 (504)
.+.+....+|+++.... |.......+.-.+..-..+ ..+..++..+...|++ .+|+.|-..|....+.+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 35677788888886553 2222222222222222223 3455667777888865 45777777777666666
Q ss_pred HHHHHHHHHHHHHhhCC----------CCcCH--HHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhcccc
Q 043204 204 EATHLLYSMFWRISQKG----------SGEDI--VIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPC 271 (504)
Q Consensus 204 ~a~~~~~~~~~~~~~~~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (504)
-..+++......+...+ -.|+. .++.-+...|...|++++|++++++.+.. .|+....+..
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~----- 233 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMT----- 233 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHH-----
Confidence 66666666644332222 12333 35566778888999999999999998886 3443444444
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHH
Q 043204 272 NDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEAL 351 (504)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 351 (504)
-...+-+.|++.+|.+.++..+..+.. |...-+-.+..+.+.|++++|.
T Consensus 234 ------------------------------KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~ 282 (517)
T PF12569_consen 234 ------------------------------KARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAE 282 (517)
T ss_pred ------------------------------HHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHH
Confidence 444444455555555555555554332 4444444445555555555555
Q ss_pred HHHHHHHhcCCCCccHHH--------HHHHHHHHHhcCChHHHHHHHHHHHH
Q 043204 352 EVIEEEMVKGTFVPTVRV--------YNILLKGLCDAGNSAVAVMYLKKMSK 395 (504)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~ 395 (504)
+++.. ..+.+..|.... ......+|.+.|++..|++.|..+.+
T Consensus 283 ~~~~~-Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 283 KTASL-FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHh-hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55554 333222221111 12233455555666655555555443
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.3e-08 Score=85.45 Aligned_cols=420 Identities=11% Similarity=0.037 Sum_probs=219.5
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchH
Q 043204 52 IGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKL 131 (504)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 131 (504)
+.-+...+++..|+.+++.-...+-+....+-.-+..++.+.|++++|...|..+.+.+ .++...+..|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44456677899999999887755522222344445677789999999999999887755 44466777777777888999
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043204 132 EAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYS 211 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 211 (504)
.+|..+-.+..+. ...-..|+..--+.++-++...+-+.+.+. ..---+|.+.....-.+++|.++|..
T Consensus 108 ~eA~~~~~ka~k~------pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKAPKT------PLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhCCCC------hHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999888766432 223344555666778888877777766642 23334455555566688999999998
Q ss_pred HHHHHhhCCCCcCHHHHHH-HHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHc
Q 043204 212 MFWRISQKGSGEDIVIYRT-LLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIR 290 (504)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 290 (504)
+ ... .|.....|. +.-+|.+..-++-+.++++--++. .|++.....+..+...+.-+-..|+.-..++...
T Consensus 177 v----L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN 248 (557)
T KOG3785|consen 177 V----LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADN 248 (557)
T ss_pred H----Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc
Confidence 8 333 223333333 345678888888888888887765 3455555554443333322222222222222221
Q ss_pred CCC--------------------------C-----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHH-
Q 043204 291 GGI--------------------------P-----SLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKL- 338 (504)
Q Consensus 291 ~~~--------------------------~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~- 338 (504)
+-. | -+..-..++--|.+.+++.+|..+.+++.-. .|.......++
T Consensus 249 ~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~ 326 (557)
T KOG3785|consen 249 IDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVF 326 (557)
T ss_pred ccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHH
Confidence 110 0 0011112222333445555554444333211 11111111111
Q ss_pred ----HHHhcCCCHHHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 043204 339 ----AALFKDGMVDEALEVIEEEMVKGTFVPT-VRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGL 413 (504)
Q Consensus 339 ----~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 413 (504)
+-........-|.+.|+- .-..+..-| +.--.++..++.-..++++.+.+++.+..- -...|...+ .+..++
T Consensus 327 aalGQe~gSreHlKiAqqffql-VG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk 403 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQL-VGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAK 403 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHH
Confidence 111111123333333332 222222211 112223334444445555555555555442 222233333 355666
Q ss_pred hhcCcHHHHHHHHHHHHhcCcCCCcchHH-HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhH
Q 043204 414 CRDGRFLEASRVLEEMLIRSYWPCVETYN-VLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLNV 492 (504)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 492 (504)
+..|++.+|+++|-++....++ |..+|. .|.++|.+.+++.-|..++-++ +...+..++..+|..-|-..+.+--
T Consensus 404 ~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777665543332 334443 3445666777776665544433 3333444444444333333332444
Q ss_pred HHHHHHHh
Q 043204 493 CRKTLEQL 500 (504)
Q Consensus 493 a~~~~~~~ 500 (504)
|-+.|+.+
T Consensus 480 aaKAFd~l 487 (557)
T KOG3785|consen 480 AAKAFDEL 487 (557)
T ss_pred HHHhhhHH
Confidence 44444433
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=1e-09 Score=105.17 Aligned_cols=248 Identities=14% Similarity=0.099 Sum_probs=132.1
Q ss_pred CCHHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHH---------hcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 043204 165 RRSDLALHVFQEMDFQGCYPD-RESYHILMKGLC---------NDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFA 234 (504)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (504)
++.++|..+|++..+.. |+ ...|..+..++. ..+++++|...+++. .+.... +...+..+...
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A----l~ldP~-~~~a~~~lg~~ 347 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA----TELDHN-NPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH----HhcCCC-CHHHHHHHHHH
Confidence 45677788887777653 33 344544444332 223467788887777 443322 56667777777
Q ss_pred HHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 043204 235 LCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVE 314 (504)
Q Consensus 235 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 314 (504)
+...|++++|...|++..+.+ |+ +...+..+...+...|++++
T Consensus 348 ~~~~g~~~~A~~~~~~Al~l~--P~-----------------------------------~~~a~~~lg~~l~~~G~~~e 390 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANLLS--PI-----------------------------------SADIKYYYGWNLFMAGQLEE 390 (553)
T ss_pred HHHccCHHHHHHHHHHHHHhC--CC-----------------------------------CHHHHHHHHHHHHHCCCHHH
Confidence 777888888888888887763 22 33444455555666666666
Q ss_pred HHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043204 315 GDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVP-TVRVYNILLKGLCDAGNSAVAVMYLKKM 393 (504)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 393 (504)
|...+++..+..+. +...+..++..+...|++++|...+++.+... .| +...+..+..++...|+.++|...+.++
T Consensus 391 Ai~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 391 ALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 66666666665432 22222223333444566666666666533332 12 2333444555566666666666666665
Q ss_pred HHhcCCCCch-hhHHHHHHHHhhcCcHHHHHHHHHHHHhc-CcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043204 394 SKQVGCVANG-ETYGILVDGLCRDGRFLEASRVLEEMLIR-SYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQ 467 (504)
Q Consensus 394 ~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (504)
... .|+. ...+.+...|...| ++|...++.+.+. ...+....+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 468 ~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 468 STQ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhc---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 432 2332 22333444455555 3555555555443 112222222 22233444555555444 555543
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=2e-12 Score=78.87 Aligned_cols=50 Identities=38% Similarity=0.612 Sum_probs=32.8
Q ss_pred CCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 043204 436 PCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCC 485 (504)
Q Consensus 436 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 485 (504)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666553
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=2e-09 Score=98.37 Aligned_cols=252 Identities=18% Similarity=0.084 Sum_probs=170.1
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-----C-CCccH-HHHHHHHHHHHhcchHHHHHHHHHHhhcC---
Q 043204 75 SCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQF-----N-CVNWT-QSFNTLLKEMVKESKLEAAHILFLRSCYG--- 144 (504)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 144 (504)
+.|.-..+...+...|...|+++.|+.+++...+. | ..|.. ...+.+...|...+++++|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33334456777899999999999999999976653 1 12222 33455777888999999999999887531
Q ss_pred --CCCcc-hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC-----CC-CCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043204 145 --WEVKS-RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ-----GC-YPDR-ESYHILMKGLCNDRRLNEATHLLYSMFW 214 (504)
Q Consensus 145 --~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 214 (504)
+...| -..+++.|...|.+.|++++|...+++..+- |. .|.. .-++.+...+...+++++|..+++...+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 12233 3567888888999999999998888766431 21 1222 2356667778899999999999998876
Q ss_pred HHhhCCCCcC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHc
Q 043204 215 RISQKGSGED----IVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIR 290 (504)
Q Consensus 215 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 290 (504)
.+.+. +.++ ..+++.|...|...|++++|.++++++++...... ..
T Consensus 354 i~~~~-~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~-----------------------------~~ 403 (508)
T KOG1840|consen 354 IYLDA-PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL-----------------------------GK 403 (508)
T ss_pred HHHhh-ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-----------------------------cC
Confidence 65422 2222 46789999999999999999999999876521100 00
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCC--CcchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 043204 291 GGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRT----KGF--WPSLVMYEAKLAALFKDGMVDEALEVIEE 356 (504)
Q Consensus 291 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (504)
...-....++.+...|.+.+++++|.++|.+... .|+ +-...+|..|...|...|+++.|.++.+.
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0011234567777788888888888888876543 221 11234556666666666666666666554
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=3.1e-10 Score=93.75 Aligned_cols=231 Identities=13% Similarity=0.038 Sum_probs=171.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhh
Q 043204 84 ATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQ 163 (504)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (504)
+.+.++|.+.|.+.+|.+.|+...+.... +.||..|-+.|.+..+...|+.+|.+-.+. .+-|+....-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~--~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH--PDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc--hhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 67788899999999999999887776544 457778888999999999999999887755 34455555566777888
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhH
Q 043204 164 CRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQD 243 (504)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 243 (504)
.++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+|+.+ .+.|.. +...|+.+.-+|.-.++++-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRi----LqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRI----LQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHH----HHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 899999999999888763 235566666777788888999999999888 788876 77888888888888899999
Q ss_pred HHHHHHHHHHcCCCCC-cchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 043204 244 AMQILEKILRKGLKAP-KSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEM 322 (504)
Q Consensus 244 a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 322 (504)
++.-|+.....--.|. ....+..+.......||+..|.+.|+-.+..+.. +...++.+...-.+.|++++|..++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9988888876533222 2233333466666777777777777777665544 4566666666666667777777777766
Q ss_pred HHC
Q 043204 323 RTK 325 (504)
Q Consensus 323 ~~~ 325 (504)
...
T Consensus 456 ~s~ 458 (478)
T KOG1129|consen 456 KSV 458 (478)
T ss_pred hhh
Confidence 654
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=7.2e-10 Score=91.63 Aligned_cols=228 Identities=11% Similarity=-0.017 Sum_probs=142.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 043204 155 NLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFA 234 (504)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 234 (504)
+.+..+|.+.|-+.+|.+.|+.-.+. .|-+.||..|-++|.+..++..|+.++.+. .+. .+-|+....-+.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~g----ld~-fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEG----LDS-FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhh----hhc-CCchhhhhhhhHHH
Confidence 55777888888888888888877766 566677888888888888888888887766 332 23344444556677
Q ss_pred HHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 043204 235 LCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVE 314 (504)
Q Consensus 235 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 314 (504)
+-..++.++|.++++...+. .|.+......+...+.-.++++.|+..++++++.|.. +...|+.+.-+|.-.+++|-
T Consensus 300 ~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 77778888888888887765 3344444444455555566666666666666666665 55666666656666666666
Q ss_pred HHHHHHHHHHCCCCc--chhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043204 315 GDKVLDEMRTKGFWP--SLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKK 392 (504)
Q Consensus 315 a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 392 (504)
++.-|.+....--.| -..+|-.+.......|++..|.+.|+-++... ..+...++.|.-.-.+.|++++|..+++.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 666666655532222 22345555555556666666666666433322 23344555555555566666666666665
Q ss_pred HH
Q 043204 393 MS 394 (504)
Q Consensus 393 ~~ 394 (504)
..
T Consensus 455 A~ 456 (478)
T KOG1129|consen 455 AK 456 (478)
T ss_pred hh
Confidence 54
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.34 E-value=2.9e-07 Score=85.44 Aligned_cols=384 Identities=15% Similarity=0.042 Sum_probs=222.1
Q ss_pred CCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCH-h
Q 043204 109 FNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDR-E 187 (504)
Q Consensus 109 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~ 187 (504)
..+..+...|..+.-+....|+++.+.+.|++.... .-.....|+.+...|...|.-..|..+++.-......|+. .
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 344455667777777777778888887777776532 2234556777777777777777777777766544322332 2
Q ss_pred hHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc-----------CchhHHHHHHHHHHHcC
Q 043204 188 SYHILMKGLC-NDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQ-----------GKIQDAMQILEKILRKG 255 (504)
Q Consensus 188 ~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~ 255 (504)
.+-..-..|. +.+..++++.+-.++........-......|..+.-+|... ....++.+.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3332333333 45666666666665532111111111233444444444321 12345666666666653
Q ss_pred CCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCC------
Q 043204 256 LKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTK-GFW------ 328 (504)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~------ 328 (504)
|.+......+.--++..++++.|....++.++-+..-+...|..+...+...+++.+|+.+.+..... |..
T Consensus 475 --~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 475 --PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred --CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 33333333334455666777777777777777755556777777666666667777777776655432 110
Q ss_pred ------------cchhhHHHHHHHHh-----------------------cCCCHHHHHHHHHH-------HHhcCC----
Q 043204 329 ------------PSLVMYEAKLAALF-----------------------KDGMVDEALEVIEE-------EMVKGT---- 362 (504)
Q Consensus 329 ------------~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~-------~~~~~~---- 362 (504)
-...|...++..+- ..++..++.+.... -.+..+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 00011111111111 00011111111110 000001
Q ss_pred -----CC--cc------HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHH
Q 043204 363 -----FV--PT------VRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEM 429 (504)
Q Consensus 363 -----~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 429 (504)
.. |+ ...|......+.+.+..++|...+.+..+. ..-....|......+...|..++|.+.|...
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 11 11 123445556677888888888888887653 2334566777777788899999999999988
Q ss_pred HhcCcCCCcchHHHHHHHHHccCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHhh
Q 043204 430 LIRSYWPCVETYNVLIRGLCSIGKQYEAVM--WLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQLS 501 (504)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 501 (504)
...+ +-++....++...+.+.|+..-|.. ++..+.+.+ +.+...|..+... .+.-||.++|.+.|....
T Consensus 711 l~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v-~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 711 LALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEV-FKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHH-HHHccchHHHHHHHHHHH
Confidence 8764 3346677888899999998888888 999998653 3345777777777 444555999999887654
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=2.6e-09 Score=97.62 Aligned_cols=251 Identities=18% Similarity=0.143 Sum_probs=173.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh-CCC-CcCHH-HHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcch
Q 043204 186 RESYHILMKGLCNDRRLNEATHLLYSMFWRISQ-KGS-GEDIV-IYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSR 262 (504)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 262 (504)
..+...+...|...|+++.|..+++...+.+.+ .|. .|... ..+.+...|...+++++|..+|+++...-.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e------ 272 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE------ 272 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH------
Confidence 356666888999999999999999988654322 221 22322 233466788888999999999998876311
Q ss_pred hhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCC-cch-hhHH
Q 043204 263 RHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTK-----GFW-PSL-VMYE 335 (504)
Q Consensus 263 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~ 335 (504)
...-.....-..+++.|..+|.+.|++++|...++...+- |.. |.. ..++
T Consensus 273 -----------------------~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 273 -----------------------EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred -----------------------HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 1100000112356667777888889988888777766441 211 122 3355
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC--CCc----cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc----C-CCC-ch
Q 043204 336 AKLAALFKDGMVDEALEVIEEEMVKGT--FVP----TVRVYNILLKGLCDAGNSAVAVMYLKKMSKQV----G-CVA-NG 403 (504)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~p-~~ 403 (504)
.+...|...+++++|..+++..+.... ..+ -..+++.|...|...|++++|.++++++.... + ..+ ..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 677778889999999988887544322 122 23578999999999999999999999987652 1 112 23
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHHHHHhc--CcCCC----cchHHHHHHHHHccCCHHHHHHHHHHHH
Q 043204 404 ETYGILVDGLCRDGRFLEASRVLEEMLIR--SYWPC----VETYNVLIRGLCSIGKQYEAVMWLEEMI 465 (504)
Q Consensus 404 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (504)
..++.|...|.+.+++.+|.++|.+.... -+.|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 46788889999999999999999876542 11233 3568889999999999999999988876
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=4.3e-08 Score=90.75 Aligned_cols=430 Identities=11% Similarity=-0.016 Sum_probs=236.9
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCC-CCccHHHHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDS-CECKDSVFAT 85 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 85 (504)
+...|..|.-++...|+++.+.+.|++.... .-.....|..+...+...|.-..|..+++.-.... .++|...+-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~---~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPF---SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh---hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3445666666677777777777777776543 22255567777777777777777777776655432 1233344444
Q ss_pred HHHHHHh-cCChhHHHHHHHHhhh-----CCCCccHHHHHHHHHHHHhc-----------chHHHHHHHHHHhhcCCCCc
Q 043204 86 AIRTYAR-AGQLNEAVSLFKNLSQ-----FNCVNWTQSFNTLLKEMVKE-----------SKLEAAHILFLRSCYGWEVK 148 (504)
Q Consensus 86 l~~~~~~-~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 148 (504)
.-..|.+ .+..++++..-.+... .+ ......|..+.-+|... ....++++.+++..+..+..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~-~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRS-HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444443 3445555444444333 11 11123333333333322 12345666666666655556
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHH
Q 043204 149 SRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIY 228 (504)
Q Consensus 149 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 228 (504)
|++..|-++ -|+..++.+.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+..++. .|. |....
T Consensus 478 p~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E---~~~--N~~l~ 550 (799)
T KOG4162|consen 478 PLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE---FGD--NHVLM 550 (799)
T ss_pred chHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH---hhh--hhhhc
Confidence 655544333 35666777777777777776644556677777777777777777777777666422 111 11111
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHcCCC-CCcchhhhhhccccCCCCChHHHHHHHHHHH--HcCCCCChhhHHHHHHH
Q 043204 229 RTLLFALCDQGKIQDAMQILEKILRKGLK-APKSRRHRIDLCPCNDGEDIEGAKSLINEAL--IRGGIPSLASYSAMAID 305 (504)
Q Consensus 229 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~ll~~ 305 (504)
..-+..-...++.+++......++..--. ++. ...++-...++....+. .....-...++..+..-
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~-----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGV-----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH-----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 11122222245555555554444332000 000 00000000000000000 00011112222222221
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCc--c------hhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 043204 306 LYNEGRIVEGDKVLDEMRTKGFWP--S------LVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGL 377 (504)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (504)
....+........ +...-+.| + ...|......+.+.+..++|...+.++-... +-....|......+
T Consensus 620 ~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 620 VASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLL 694 (799)
T ss_pred HHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHH
Confidence 1111000000000 11111112 2 2345566677888899999987777633322 33445566666677
Q ss_pred HhcCChHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHhhcCcHHHHHH--HHHHHHhcCcCCCcchHHHHHHHHHccCCH
Q 043204 378 CDAGNSAVAVMYLKKMSKQVGCVAN-GETYGILVDGLCRDGRFLEASR--VLEEMLIRSYWPCVETYNVLIRGLCSIGKQ 454 (504)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 454 (504)
...|..++|.+.|..... +.|+ +.+..++..++.+.|+..-|.. ++.++.+.+ +.+...|..+...+-+.|+.
T Consensus 695 ~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccch
Confidence 888999999999988774 4565 4678899999999999888888 999999876 56789999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 043204 455 YEAVMWLEEMISQ 467 (504)
Q Consensus 455 ~~a~~~~~~~~~~ 467 (504)
+.|.+.|+...+.
T Consensus 771 ~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 771 KQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998854
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.30 E-value=2.7e-09 Score=84.10 Aligned_cols=200 Identities=11% Similarity=-0.025 Sum_probs=166.6
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMV 126 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (504)
+...|.-.|.+.|+...|..-+++.++.+ |.+..+|..+...|.+.|+.+.|.+.|+...+..+ .+..+.|.....++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 45667778899999999999999999987 66777899999999999999999999999887763 34677888888999
Q ss_pred hcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043204 127 KESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEAT 206 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 206 (504)
..|++++|...|++....+....-..+|..+.-+..+.|+.+.|...|++..+.... ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 999999999999999887766666778899998999999999999999998887432 4566778888889999999999
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 207 HLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
.+++.. ...+. ++....-..|+.-...|+.+.+-++=.++.+.
T Consensus 194 ~~~~~~----~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERY----QQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHH----Hhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 998887 45544 78888888888888889988888877777664
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1e-07 Score=85.67 Aligned_cols=425 Identities=15% Similarity=0.064 Sum_probs=238.1
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMV 126 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (504)
..-+=++.+...+++++|.+...++...+ +.+...+..-+-+.++.+.++.|+.+.+.-.. ...+..-+-.-.-+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHH
Confidence 33444677788999999999999999887 66777788888889999999999965543211 0111111112223345
Q ss_pred hcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH-hcCCHHHH
Q 043204 127 KESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLC-NDRRLNEA 205 (504)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a 205 (504)
+.+..++|+..++..... +..+...-...+.+.|++++|+++|+.+.+++.. + +...+++-. ..+-.-.+
T Consensus 91 rlnk~Dealk~~~~~~~~-----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRL-----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQV 161 (652)
T ss_pred HcccHHHHHHHHhccccc-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhH
Confidence 789999999999843221 2234445566788999999999999999877432 2 222222111 11111111
Q ss_pred HHHHHHHHHHHhhCCCCc--CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCC-------------CCcchhhhhhccc
Q 043204 206 THLLYSMFWRISQKGSGE--DIVIYRTLLFALCDQGKIQDAMQILEKILRKGLK-------------APKSRRHRIDLCP 270 (504)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 270 (504)
++.+ .....| +...+....-.+...|++.+|+++++...+.+.. ........-+.-+
T Consensus 162 -~~~q-------~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 162 -QLLQ-------SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred -HHHH-------hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 1122 222222 2222333445677889999999999998432211 0111222234455
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCChhhHHHH---HHHHHhcCChhH--HHHHHHHHHHCCC-----------CcchhhH
Q 043204 271 CNDGEDIEGAKSLINEALIRGGIPSLASYSAM---AIDLYNEGRIVE--GDKVLDEMRTKGF-----------WPSLVMY 334 (504)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~--a~~~~~~~~~~~~-----------~~~~~~~ 334 (504)
+...|+.++|..++...++.+.. |....... |.++....++.. ++..++....... .-....-
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N 312 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRN 312 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999888877653 33222211 122222222222 2222222211100 0011111
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh-c-CChHHHHHHHHHHHHhcCCCC-chhhHHHHHH
Q 043204 335 EAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCD-A-GNSAVAVMYLKKMSKQVGCVA-NGETYGILVD 411 (504)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 411 (504)
+.++..|. +..+.+.++... ..+..|.. .+..++..+.+ . ..+..+.+++....+. .+- ...+.-.++.
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~---lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSAS---LPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHh---CCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHH
Confidence 23333332 333344443322 22233443 44444444332 2 2467788888777654 222 2345556677
Q ss_pred HHhhcCcHHHHHHHHH--------HHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH-
Q 043204 412 GLCRDGRFLEASRVLE--------EMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQ--AKLPDISVWSSLV- 480 (504)
Q Consensus 412 ~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~ll- 480 (504)
.....|+++.|.+++. .+.+.+ -.+.+...++..+.+.++.+.|..++.+..+. .-.+......+++
T Consensus 385 l~is~gn~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 7888999999999999 555544 34455667777888888888788887777631 1123333333332
Q ss_pred --HHHhcCCCchhHHHHHHHHhhc
Q 043204 481 --ASVCCNTADLNVCRKTLEQLSS 502 (504)
Q Consensus 481 --~~~~~~~~~~~~a~~~~~~~~~ 502 (504)
..+-..+|+-++|...++++.+
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHH
Confidence 2233344559999999999876
No 80
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.25 E-value=1e-06 Score=78.52 Aligned_cols=149 Identities=17% Similarity=0.143 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHhhcCcHHHHHHH
Q 043204 347 VDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVA-NGETYGILVDGLCRDGRFLEASRV 425 (504)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 425 (504)
.+.....+++......+.|+. +|..+++...+..-++.|..+|.++.+. +..+ ++.++++++.-|+ .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 334444444433333334443 4445555555555566666666666555 4444 4555555555444 3455666666
Q ss_pred HHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCCchhHHHHHHHHh
Q 043204 426 LEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDI--SVWSSLVASVCCNTADLNVCRKTLEQL 500 (504)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~a~~~~~~~ 500 (504)
|+--.++ +.-++.--...++-+...++-..+..+|++....++.||. .+|..+|. |-..-||++.+.++-+++
T Consensus 424 FeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~-yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 424 FELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE-YESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH-HHHhcccHHHHHHHHHHH
Confidence 6554443 1122222334455555556656666666666655444443 55666555 344444455555554443
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.5e-07 Score=79.50 Aligned_cols=266 Identities=13% Similarity=0.054 Sum_probs=124.6
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcc
Q 043204 183 YPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIV-IYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKS 261 (504)
Q Consensus 183 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 261 (504)
+-|......+...+...|+.++|...|++. +. +.|+.. ......-.+.+.|+.++...+...+....- -..
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~----~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--~ta 300 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSST----LC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--YTA 300 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHH----hh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--cch
Confidence 334445555555555556666655555544 11 222211 111111222344555555555554443210 111
Q ss_pred hhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHH
Q 043204 262 RRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAAL 341 (504)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (504)
..+..-++..-...+++.|+.+-...++.+.. +...+-.-...+...++.++|.-.|+..+...+ -+...|..|+++|
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHH
Confidence 11122233333445555555555555544322 223333333344444666666666655554321 2455566666666
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHH-HHHH-hcCChHHHHHHHHHHHHhcCCCCch-hhHHHHHHHHhhcCc
Q 043204 342 FKDGMVDEALEVIEEEMVKGTFVPTVRVYNILL-KGLC-DAGNSAVAVMYLKKMSKQVGCVANG-ETYGILVDGLCRDGR 418 (504)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 418 (504)
...|.+.+|.-.-+..|... +.+..+.+.+. ..|. ....-++|.+++++-.+ +.|+- ...+.+...+...|.
T Consensus 379 LA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGP 453 (564)
T ss_pred HhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCc
Confidence 66666666655555444432 22333333321 1111 12223455555555442 23432 233445555566666
Q ss_pred HHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHH
Q 043204 419 FLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMI 465 (504)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (504)
.+++..++++.... .||....+.|.+.+...+.+.+|.+.|...+
T Consensus 454 ~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 454 TKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred cchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66666666665553 3566666666666666666666666666665
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=4.2e-08 Score=80.43 Aligned_cols=353 Identities=13% Similarity=0.058 Sum_probs=182.2
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHH-HHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFAT-AIRT 89 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 89 (504)
+...+..+.+..++..|++++..-.++.|. +....+.|..+|-...++..|...++++.... |...-|.. -...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~---~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR---SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 566666777778888888888877777554 66677777778888888888888888877663 44333321 2344
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHH
Q 043204 90 YARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDL 169 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 169 (504)
+-+.+.+..|+++...|.... ..-......-.......+++..+..+.++....+ +..+.+.......+.|+++.
T Consensus 88 LY~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHH
Confidence 456677778888777775531 1101111111111224466667777776664221 22333444444567778888
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCc----CHHHHHHHHHHHHhcCc-hhHH
Q 043204 170 ALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGE----DIVIYRTLLFALCDQGK-IQDA 244 (504)
Q Consensus 170 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~-~~~a 244 (504)
|.+-|+...+-+---....|+..+. ..+.++++.|++...++ ...|++. ++..-...+++- ..|+ ..-+
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEI----ieRG~r~HPElgIGm~tegiDvr-svgNt~~lh 236 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEI----IERGIRQHPELGIGMTTEGIDVR-SVGNTLVLH 236 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHH----HHhhhhcCCccCccceeccCchh-cccchHHHH
Confidence 8887777766533334455665544 45667777777777777 3333221 111000000000 0000 0000
Q ss_pred HHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 043204 245 MQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRG-GIPSLASYSAMAIDLYNEGRIVEGDKVLDEMR 323 (504)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (504)
..-+- ..+.+-.....+.++++.|.+.+..|..+. ...|+.|...+.-. -..+++.+..+-+.-+.
T Consensus 237 ~Sal~------------eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 237 QSALV------------EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLL 303 (459)
T ss_pred HHHHH------------HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHH
Confidence 00000 001111233344455555555554443221 12355555544211 11255666666666666
Q ss_pred HCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-CccHHHHHHHHHHH-HhcCChHHHHHHHHHHHH
Q 043204 324 TKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTF-VPTVRVYNILLKGL-CDAGNSAVAVMYLKKMSK 395 (504)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~ 395 (504)
..++ ....||..++-.||+..-++-|-.++-+ -..... -.+...|+. +.++ .-...++++.+-++.+.+
T Consensus 304 ~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE-n~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 304 QQNP-FPPETFANLLLLYCKNEYFDLAADVLAE-NAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred hcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh-CcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHH
Confidence 6544 3456777788888888888888777654 111000 012222332 2332 234556666666555543
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=3.7e-09 Score=83.32 Aligned_cols=194 Identities=12% Similarity=-0.032 Sum_probs=166.6
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 043204 12 TYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYA 91 (504)
Q Consensus 12 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
..|.-.|...|++..|..-++++++.+|. +..+|..+...|.+.|..+.|.+-|++..+.. +.+-.+.|.....+|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 44677899999999999999999999887 88899999999999999999999999999887 777788999999999
Q ss_pred hcCChhHHHHHHHHhhhCC-CCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHH
Q 043204 92 RAGQLNEAVSLFKNLSQFN-CVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLA 170 (504)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 170 (504)
..|.+++|...|+...... ..-...+|..+.-+..+.|+.+.|...|++......-.| .+.-.+.....+.|++..|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--PALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--hHHHHHHHHHHhcccchHH
Confidence 9999999999999877543 222356888999999999999999999999886543333 3557788889999999999
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 171 LHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 171 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
...++.....+. ++..+.-..|+.-...|+.+.+-++=.++
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999998875 89999888899888999998887765554
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.1e-06 Score=75.59 Aligned_cols=289 Identities=15% Similarity=0.050 Sum_probs=209.2
Q ss_pred cchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHh-hHHHHHHHHHhcCCHHHHH
Q 043204 128 ESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRE-SYHILMKGLCNDRRLNEAT 206 (504)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~ 206 (504)
.++...|...+-.+......+-|+.....+..++...|+.++|+..|+.....+ |+.. ....-.-.+.+.|+.++..
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHH
Confidence 455555555555555444566678888999999999999999999999988642 3222 1122223346788888888
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHH
Q 043204 207 HLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINE 286 (504)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 286 (504)
.+...++.. .+-+...|..-.......+++..|+.+-++.++. .+.....+.+-..+....+.+++|.-.|+.
T Consensus 287 ~L~~~Lf~~-----~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 287 ALMDYLFAK-----VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred HHHHHHHhh-----hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHH
Confidence 888777421 1112333433344455667899999999988775 456667777778888899999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHH-HHHh-cCCCHHHHHHHHHHHHhcCCCC
Q 043204 287 ALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKL-AALF-KDGMVDEALEVIEEEMVKGTFV 364 (504)
Q Consensus 287 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~ 364 (504)
.+...+. +...|..++..|...|++.+|...-+..... ++.+..+.+.+. ..+. ...--++|..++++.+.. .
T Consensus 360 Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~---~ 434 (564)
T KOG1174|consen 360 AQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI---N 434 (564)
T ss_pred HHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc---C
Confidence 8865433 6789999999999999999998777665543 223555555442 2232 233457888888875554 4
Q ss_pred ccH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q 043204 365 PTV-RVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRS 433 (504)
Q Consensus 365 ~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 433 (504)
|+- ...+.+...|...|..+.++.+++..... .||....+.|.+.+...+.+++|...|......+
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 553 35566777888999999999999998854 7899999999999999999999999999888754
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.20 E-value=1.4e-08 Score=88.98 Aligned_cols=224 Identities=8% Similarity=-0.021 Sum_probs=156.5
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcc--hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChh
Q 043204 20 KQKSPLTALKIFKEAKEKYPNYRHN--GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLN 97 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~~p~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (504)
..+..+.++.-+.++....| ..|+ ...|..+...+...|++++|...|++..+.. +.+...|+.+...+...|+++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~-~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 38 PTLQQEVILARLNQILASRD-LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CchHHHHHHHHHHHHHcccc-CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 34566788888888887543 2222 3567788888999999999999999999887 667788999999999999999
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 043204 98 EAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEM 177 (504)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (504)
.|...|+...+.++. +..++..+...+...|++++|.+.|++.....+..|. .......+...++.++|...|++.
T Consensus 116 ~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~---~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 116 AAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY---RALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999999887633 3667888888899999999999999998865333221 222222344567899999999775
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC--C-cCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 178 DFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGS--G-EDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 178 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
.... .|+...+ .+. ....|+...+ +.+..+... .+..+ . .....|..+...+.+.|++++|...|++..+.
T Consensus 192 ~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~-~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 192 YEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAG-ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5432 2332222 222 2334555443 344444110 01111 1 12457888899999999999999999999876
Q ss_pred C
Q 043204 255 G 255 (504)
Q Consensus 255 ~ 255 (504)
+
T Consensus 266 ~ 266 (296)
T PRK11189 266 N 266 (296)
T ss_pred C
Confidence 4
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=1.2e-08 Score=89.38 Aligned_cols=190 Identities=11% Similarity=-0.024 Sum_probs=141.0
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
|..+...|...|++++|...|+++.+..|+ +..+|+.+...+...|++++|.+.|++..+.. +.+..++..+..++
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD---MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 566777888999999999999999999887 78999999999999999999999999999876 55677888899999
Q ss_pred HhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHH
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLA 170 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 170 (504)
...|++++|.+.|+...+.++.. . ............++.++|...|.+..... .|+...+ .+. ....|+...+
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~-~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~--~~~~~~~-~~~--~~~lg~~~~~ 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPND-P-YRALWLYLAESKLDPKQAKENLKQRYEKL--DKEQWGW-NIV--EFYLGKISEE 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHccCCHHHHHHHHHHHHhhC--CccccHH-HHH--HHHccCCCHH
Confidence 99999999999999988765332 1 11222223445678999999997755332 2332222 222 2334555443
Q ss_pred HHHHHHhhhC---CC--C-CCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 171 LHVFQEMDFQ---GC--Y-PDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 171 ~~~~~~~~~~---~~--~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
+.+..+.+. .+ . .....|..+...+.+.|++++|...|++.
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444421 11 1 12357888999999999999999999988
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=4e-07 Score=74.86 Aligned_cols=360 Identities=13% Similarity=0.104 Sum_probs=222.0
Q ss_pred hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHH-HHHH
Q 043204 45 GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFN-TLLK 123 (504)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~ 123 (504)
...+.+.+..+.+..++++|++++..-.+.. +.+....+.+..+|-...++..|-..++++.... |...-|. .-..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQ 86 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHH
Confidence 3446777888888999999999999988876 4466778889999999999999999999997754 3333332 2345
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLN 203 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 203 (504)
.+.+.+.+..|+++...+........... ..-.......+|+..+..+.++....| +..+.+.......+.|+++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~~L~~~~l--qLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNPALHSRVL--QLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCHHHHHHHH--HHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 56678899999999988865321111111 111112345788999999999887543 4455555555567899999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHH
Q 043204 204 EATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSL 283 (504)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 283 (504)
.|.+-|+... .-.|..| ...|+..+ +..+.|+++.|++...+++++|+..............- ..+.+.....+
T Consensus 162 aAvqkFqaAl---qvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi-DvrsvgNt~~l 235 (459)
T KOG4340|consen 162 AAVQKFQAAL---QVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI-DVRSVGNTLVL 235 (459)
T ss_pred HHHHHHHHHH---hhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC-chhcccchHHH
Confidence 9999999883 4455554 55676554 45567899999999999999987633222111110000 00111111111
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 043204 284 INEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKG-FWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGT 362 (504)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 362 (504)
.... -...+|.-...+.+.++.+.|.+.+-.|.-+. ...|++|...+.-.-.. +++-...+-+.-.+....
T Consensus 236 h~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 236 HQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred HHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHHHHHhcCC
Confidence 1111 12334444455677899999999888885432 33467776655433222 233333333333233443
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHh-hcCcHHHHHHHHHHH
Q 043204 363 FVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLC-RDGRFLEASRVLEEM 429 (504)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 429 (504)
+ ...||..++-.||++.-++.|-.++.+-....-.-.+...|+. ++++. ..-..++|.+-++.+
T Consensus 308 f--P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 308 F--PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred C--ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHH
Confidence 3 3358888899999999999998888764322011123344443 33332 234566666555544
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.17 E-value=3.6e-08 Score=90.06 Aligned_cols=305 Identities=9% Similarity=-0.031 Sum_probs=158.3
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcch-hcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNG-PVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT 89 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (504)
|..+...+...|+++.+...+....+..|. .++. .........+...|++++|.+++++..+.. |.+...+.. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAA-RATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 444555555667777777777666665442 1121 122222344556677777777777776654 344444432 112
Q ss_pred HH----hcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcC
Q 043204 90 YA----RAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCR 165 (504)
Q Consensus 90 ~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (504)
+. ..+....+.+.+... ....+........+...+...|++++|...+++..... +.+...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcC
Confidence 22 234444455544431 11212223334455556677777777777777776542 223455666777777777
Q ss_pred CHHHHHHHHHHhhhCCC-CCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC-CcCHH---HHHHHHHHHHhc
Q 043204 166 RSDLALHVFQEMDFQGC-YPDR--ESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGS-GEDIV---IYRTLLFALCDQ 238 (504)
Q Consensus 166 ~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~ 238 (504)
++++|...+++...... .|+. ..|..+...+...|++++|..++++. ..... .+... ....++.-+...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH----IAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH----hccccCCChHHHHhhHHHHHHHHHhc
Confidence 77777777777665421 1222 23445666777777777777777776 32222 12221 111444444444
Q ss_pred CchhHHHHH--HHHHHHcCCC-CCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCC------CChhhHHHHHH--HHH
Q 043204 239 GKIQDAMQI--LEKILRKGLK-APKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGI------PSLASYSAMAI--DLY 307 (504)
Q Consensus 239 g~~~~a~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ll~--~~~ 307 (504)
|....+.++ +......... +............+...|+.+.|..++..+...... .....-..++. ++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 543333333 2111111100 111111123345556667777777777766542211 11222222333 345
Q ss_pred hcCChhHHHHHHHHHHHC
Q 043204 308 NEGRIVEGDKVLDEMRTK 325 (504)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~ 325 (504)
..|+.+.|.+.+......
T Consensus 319 ~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 319 AEGNYATALELLGPVRDD 336 (355)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 669999999998887765
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.15 E-value=3e-07 Score=84.09 Aligned_cols=308 Identities=13% Similarity=-0.001 Sum_probs=189.2
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCC-CccH-HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHH-
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSC-ECKD-SVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNT- 120 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 120 (504)
....|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.++...+..+ .+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHh
Confidence 455677777778788888887777776654431 1222 2223334456778999999999999887653 33334332
Q ss_pred --HHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043204 121 --LLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCN 198 (504)
Q Consensus 121 --ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 198 (504)
........+..+.+.+.+.... ...+........+...+...|++++|.+.+++..+.. +.+...+..+..++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 1222223455566666665521 1222234445566678899999999999999999875 3356677888889999
Q ss_pred cCCHHHHHHHHHHHHHHHhhCCC-CcC--HHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcch-h-hh-hhccccC
Q 043204 199 DRRLNEATHLLYSMFWRISQKGS-GED--IVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSR-R-HR-IDLCPCN 272 (504)
Q Consensus 199 ~~~~~~a~~~~~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~ 272 (504)
.|++++|...+++. ..... .++ ...|..+...+...|++++|..++++.......+.... . .. .+.....
T Consensus 161 ~g~~~eA~~~l~~~----l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 161 QGRFKEGIAFMESW----RDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred cCCHHHHHHHHHhh----hhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 99999999999988 33322 233 34577899999999999999999999865432112111 1 11 2222333
Q ss_pred CCCChHHHHHH--H-HHHHHcCCCCChhhHH--HHHHHHHhcCChhHHHHHHHHHHHCCCC------c--chhhHHHHHH
Q 043204 273 DGEDIEGAKSL--I-NEALIRGGIPSLASYS--AMAIDLYNEGRIVEGDKVLDEMRTKGFW------P--SLVMYEAKLA 339 (504)
Q Consensus 273 ~~~~~~~a~~~--~-~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~ 339 (504)
..|..+.+.+. + ......... ....+. ....++...|+.+.|..+++.+...... . .........-
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~ 315 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEAL 315 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHH
Confidence 33333333222 2 221111111 122222 4555666779999999999988763211 0 1122222233
Q ss_pred HHhcCCCHHHHHHHHHHHHhc
Q 043204 340 ALFKDGMVDEALEVIEEEMVK 360 (504)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~ 360 (504)
++...|+.++|.+.+..++..
T Consensus 316 ~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 316 YAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 456899999999999885543
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=8.1e-07 Score=79.20 Aligned_cols=105 Identities=12% Similarity=0.044 Sum_probs=86.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCC
Q 043204 16 QIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQ 95 (504)
Q Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (504)
.+....|+++.|+..|-......|+ |...|+.-..+|+..|++++|.+=-.+-.+.. |..+..|+....++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~---nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT---NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC---ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhccc
Confidence 3456789999999999999999886 88999999999999999999998887777776 6667789999999999999
Q ss_pred hhHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 043204 96 LNEAVSLFKNLSQFNCVNWTQSFNTLLKEM 125 (504)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (504)
+++|+..|.+-++... .+...++.+..++
T Consensus 86 ~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDP-SNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcCC-chHHHHHhHHHhh
Confidence 9999999999887652 3344445555554
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=9.2e-08 Score=82.61 Aligned_cols=250 Identities=15% Similarity=0.136 Sum_probs=150.7
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHH
Q 043204 89 TYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSD 168 (504)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 168 (504)
-+.-.|++..++.-.+ ........+......+.+++...|+.+.++. .+... ..|.......+...+...++-+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~--~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS--SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT--SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC--CChhHHHHHHHHHHHhCccchH
Confidence 3344566666665444 3333323334444556666667776654432 22222 2445555555554444435556
Q ss_pred HHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHH
Q 043204 169 LALHVFQEMDFQGCYP-DRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQI 247 (504)
Q Consensus 169 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 247 (504)
.+..-+++.......+ +..........+...|++++|++++.. + .+.......+.+|.+.++++.|.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~--------~--~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHK--------G--GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTT--------T--TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHc--------c--CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 6666665554433222 222233333456678888888877542 2 3566777788889999999999999
Q ss_pred HHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHH
Q 043204 248 LEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYN----EGRIVEGDKVLDEMR 323 (504)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~ 323 (504)
++.|.+.+ +..+...+..++.. .+.+.+|..+|+++.
T Consensus 154 l~~~~~~~---------------------------------------eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~ 194 (290)
T PF04733_consen 154 LKNMQQID---------------------------------------EDSILTQLAEAWVNLATGGEKYQDAFYIFEELS 194 (290)
T ss_dssp HHHHHCCS---------------------------------------CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred HHHHHhcC---------------------------------------CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 98887642 22333334444433 356899999999987
Q ss_pred HCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHh
Q 043204 324 TKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNS-AVAVMYLKKMSKQ 396 (504)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 396 (504)
+. ..+++.+.+.+..++...|++++|.+++.+++... +-+..+...++-+....|+. +.+.+++.++...
T Consensus 195 ~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 195 DK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 65 45688888889999999999999999999865544 34556777777777788877 6677888888754
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=3.4e-08 Score=88.44 Aligned_cols=226 Identities=15% Similarity=0.082 Sum_probs=169.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAG 94 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (504)
..-+.+.|++.+|.-.|+...+.+|+ +..+|..|...-+..++-..|+..+++..+.. +.|..+.-.|.-.|...|
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence 34566889999999999999999998 99999999999999999999999999999998 777888999999999999
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHH---------HHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcC
Q 043204 95 QLNEAVSLFKNLSQFNCVNWTQSFNTL---------LKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCR 165 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (504)
.-..|++.|+..+...++- .|... -..+.....+....++|-++....+..+|..+...|...|--.|
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hHHHHHHHHHHHHHhCccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 9999999999875543110 00000 01222233445566666666655554455556677777788888
Q ss_pred CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCchhHH
Q 043204 166 RSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED-IVIYRTLLFALCDQGKIQDA 244 (504)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 244 (504)
++++|.+.|+..+.... -|...||.|-..++...+..+|+..|.+. .+ +.|+ +.....|.-+|...|.+++|
T Consensus 445 efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rA----Lq--LqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRA----LQ--LQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHH----Hh--cCCCeeeeehhhhhhhhhhhhHHHH
Confidence 89999998888887642 25678888888888888888888888877 33 3444 33455577778888888888
Q ss_pred HHHHHHHHHc
Q 043204 245 MQILEKILRK 254 (504)
Q Consensus 245 ~~~~~~~~~~ 254 (504)
.+.|-..+..
T Consensus 518 ~~hlL~AL~m 527 (579)
T KOG1125|consen 518 VKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHh
Confidence 8888776553
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.06 E-value=1e-06 Score=81.59 Aligned_cols=53 Identities=21% Similarity=-0.072 Sum_probs=26.0
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 411 DGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
+..+..+.++-|..+-+-..+.. .|.. .-.+..-+-..|++++|.+-+-+..+
T Consensus 971 d~a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 971 DFAADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hhhhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhHHHhh
Confidence 33444555555555554444332 1222 22333344566777777666655553
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.03 E-value=7.4e-06 Score=69.01 Aligned_cols=206 Identities=10% Similarity=-0.009 Sum_probs=129.1
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 043204 158 MDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCD 237 (504)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (504)
+..+.-.|+...|+.....+.+-. +-|...|..-..+|...|++..|+.-++.. .+.. ..+..++..+-..+..
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~a----skLs-~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQA----SKLS-QDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHH----Hhcc-ccchHHHHHHHHHHHh
Confidence 334556788888888888887753 236666677777888888888887777665 3332 2245666667777778
Q ss_pred cCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 043204 238 QGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDK 317 (504)
Q Consensus 238 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 317 (504)
.|+.+.++...++-++.+ |+. ......++.+.+. .---.-+......+++.++.+
T Consensus 236 vgd~~~sL~~iRECLKld--pdH-----------------K~Cf~~YKklkKv------~K~les~e~~ie~~~~t~cle 290 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLD--PDH-----------------KLCFPFYKKLKKV------VKSLESAEQAIEEKHWTECLE 290 (504)
T ss_pred hhhHHHHHHHHHHHHccC--cch-----------------hhHHHHHHHHHHH------HHHHHHHHHHHhhhhHHHHHH
Confidence 888888888887777653 222 2222222222211 000001123344577777887
Q ss_pred HHHHHHHCCCCcchh---hHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043204 318 VLDEMRTKGFWPSLV---MYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMS 394 (504)
Q Consensus 318 ~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 394 (504)
-.+...+..+..... .+..+-.++...+++-+|++...+.+... +.|..++.--..+|.-..+++.|+.-|+...
T Consensus 291 ~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 291 AGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--PDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 777777765442233 33445566777888888888887744332 2347777777788888888888888888877
Q ss_pred Hh
Q 043204 395 KQ 396 (504)
Q Consensus 395 ~~ 396 (504)
+.
T Consensus 369 e~ 370 (504)
T KOG0624|consen 369 EL 370 (504)
T ss_pred hc
Confidence 53
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.03 E-value=3.6e-06 Score=87.30 Aligned_cols=344 Identities=14% Similarity=0.023 Sum_probs=205.4
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCC-----cch--HHHHHHHHHHH
Q 043204 89 TYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEV-----KSR--IQSLNLLMDVL 161 (504)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~--~~~~~~l~~~~ 161 (504)
.....|++..+...++.+.......+..........+...|+++++...+......... .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777777777766532111111222233444556778999998888776432111 111 12222334456
Q ss_pred hhcCCHHHHHHHHHHhhhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCc-CHHHHHHHHHHHH
Q 043204 162 CQCRRSDLALHVFQEMDFQGCYPDR----ESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGE-DIVIYRTLLFALC 236 (504)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 236 (504)
...|+++.|...+++....-...+. ...+.+...+...|++++|...+++........+... ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999987653111121 2345555667789999999999988854434333221 1235556677788
Q ss_pred hcCchhHHHHHHHHHHHc----CCC--CCcchhhhhhccccCCCCChHHHHHHHHHHHHcCC--CC--ChhhHHHHHHHH
Q 043204 237 DQGKIQDAMQILEKILRK----GLK--APKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGG--IP--SLASYSAMAIDL 306 (504)
Q Consensus 237 ~~g~~~~a~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~--~~~~~~~ll~~~ 306 (504)
..|+++.|...+++.... +.. +........+...+...|+++.|...+.+...... .+ ....+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998887653 111 11111222334455667999999998888764311 11 123333344556
Q ss_pred HhcCChhHHHHHHHHHHHCCCCc-chhhH-----HHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccH---HHHHHHHHHH
Q 043204 307 YNEGRIVEGDKVLDEMRTKGFWP-SLVMY-----EAKLAALFKDGMVDEALEVIEEEMVKGTFVPTV---RVYNILLKGL 377 (504)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~ 377 (504)
...|+.+.|...+.......... ....+ ...+..+...|+.+.|...+.. .......... ..+..+..++
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQ-APKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHh-cCCCCCccchhHHHHHHHHHHHH
Confidence 66799999999888875421110 11111 1122344567889999888776 3322111111 1134566678
Q ss_pred HhcCChHHHHHHHHHHHHhc---CCCCc-hhhHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q 043204 378 CDAGNSAVAVMYLKKMSKQV---GCVAN-GETYGILVDGLCRDGRFLEASRVLEEMLIRS 433 (504)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 433 (504)
...|++++|...+++..... +..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999998876531 22222 2356667788889999999999999988753
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.02 E-value=1.6e-06 Score=89.80 Aligned_cols=344 Identities=14% Similarity=0.002 Sum_probs=214.0
Q ss_pred HHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC------Cc--cHHHHHHHHHH
Q 043204 53 GILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNC------VN--WTQSFNTLLKE 124 (504)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~--~~~~~~~ll~~ 124 (504)
......|++..+..+++.+.......++.........+...|++++|...+....+.-. .+ .......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777777663221122223334445556678999999999887654211 11 11222233345
Q ss_pred HHhcchHHHHHHHHHHhhcCCCCcc---hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC----CC-CCCHhhHHHHHHHH
Q 043204 125 MVKESKLEAAHILFLRSCYGWEVKS---RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ----GC-YPDRESYHILMKGL 196 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~~l~~~~ 196 (504)
+...|+++.|...+++......... .....+.+...+...|++++|...+++.... |. .+...++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 5678999999999988764211111 1234566667778899999999999887642 11 11123455566778
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCc---CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCC--CCC-cchhhhhhccc
Q 043204 197 CNDRRLNEATHLLYSMFWRISQKGSGE---DIVIYRTLLFALCDQGKIQDAMQILEKILRKGL--KAP-KSRRHRIDLCP 270 (504)
Q Consensus 197 ~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~-~~~~~~~~~~~ 270 (504)
...|+++.|...+++........+... ....+..+...+...|++++|...+.+...... .+. .......+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999999998865544444321 233455566677788999999999988765321 111 12223334556
Q ss_pred cCCCCChHHHHHHHHHHHHcCCCCC-hhhHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCcc---hhhHHHHHHHH
Q 043204 271 CNDGEDIEGAKSLINEALIRGGIPS-LASYS-----AMAIDLYNEGRIVEGDKVLDEMRTKGFWPS---LVMYEAKLAAL 341 (504)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 341 (504)
....|+.+.|...+........... ...+. ..+..+...|+.+.|...+........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 7788999999999988864311111 11111 112334456899999888776554221111 11134566778
Q ss_pred hcCCCHHHHHHHHHHHHhc---CCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 043204 342 FKDGMVDEALEVIEEEMVK---GTFVPT-VRVYNILLKGLCDAGNSAVAVMYLKKMSKQ 396 (504)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 396 (504)
...|+.++|...+++++.. .|..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999885542 222222 235566677888999999999999998875
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=3e-08 Score=85.55 Aligned_cols=127 Identities=18% Similarity=0.125 Sum_probs=54.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCCCCchhhHH
Q 043204 332 VMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCD----AGNSAVAVMYLKKMSKQVGCVANGETYG 407 (504)
Q Consensus 332 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 407 (504)
......+..|.+.++++.|.+.++. |.+. ..|. +...+..++.. ...+.+|..+|+++.+ ...+++.+.+
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~-~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~ln 205 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKN-MQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLN 205 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH-HHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHH-HHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHH
Confidence 3334444455555555555555554 4432 1222 22222222221 1235555555555443 2334444555
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCH-HHHHHHHHHHH
Q 043204 408 ILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQ-YEAVMWLEEMI 465 (504)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 465 (504)
.+..++...|++++|.+++.+....+ +-++.+...++.+....|+. +.+.+++.++.
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 55555555555555555555544432 22333444444444444544 34444555554
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.9e-06 Score=75.77 Aligned_cols=106 Identities=12% Similarity=0.095 Sum_probs=86.8
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchH
Q 043204 52 IGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKL 131 (504)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 131 (504)
.++....|+++.|+..|...+... ++|-..|+.-..+|...|++++|++=-.+-.+.+ +.|...|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccH
Confidence 356678899999999999999888 6788889999999999999999988777777665 56788999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHH
Q 043204 132 EAAHILFLRSCYGWEVKSRIQSLNLLMDVL 161 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (504)
++|+.-|.+-.+.. +.+...++-+..++
T Consensus 87 ~eA~~ay~~GL~~d--~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD--PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcC--CchHHHHHhHHHhh
Confidence 99999998877542 33455556666655
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.96 E-value=8.8e-06 Score=78.14 Aligned_cols=466 Identities=11% Similarity=0.031 Sum_probs=227.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAG 94 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (504)
.-.|.+.++...|..-|+...+..|. |...|..++.+|.+.|++..|.++|.+..... |.+...-.-....-+..|
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPk---D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPK---DYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCch---hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhh
Confidence 34456677778888888888887776 77888888888888888888888887777654 222222222222334567
Q ss_pred ChhHHHHHHHHhhhC------CCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCC------CCcchHHHHHHHHHHHh
Q 043204 95 QLNEAVSLFKNLSQF------NCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGW------EVKSRIQSLNLLMDVLC 162 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~ 162 (504)
.+++|+..+..+... +...-..++-.+...+...|-..+|...+++..+.. ....+...|-.+-.+|.
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence 788887777765431 111112233333333333333333333333321100 00111111211111110
Q ss_pred hcCCHH------HHHHHHH-HhhhCCC--------------------CCCHhhHHHHHHHHHh--------cCCHHHHHH
Q 043204 163 QCRRSD------LALHVFQ-EMDFQGC--------------------YPDRESYHILMKGLCN--------DRRLNEATH 207 (504)
Q Consensus 163 ~~~~~~------~a~~~~~-~~~~~~~--------------------~p~~~~~~~l~~~~~~--------~~~~~~a~~ 207 (504)
-.-..+ ....+|. +....+. ..+..+|..+...|.+ ..+...|..
T Consensus 725 ~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~ 804 (1238)
T KOG1127|consen 725 IFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIR 804 (1238)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHH
Confidence 000000 0000111 0111111 1122333333333322 112235666
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHH
Q 043204 208 LLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEA 287 (504)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 287 (504)
.+.+.. +.. ..+..+|+.|.-. ...|.+.-+.-.|-+-... .|.....+..+..++....+++.|...|...
T Consensus 805 c~KkaV----~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 805 CCKKAV----SLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHH----HHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccHHHhhHHHHhh
Confidence 666552 221 2255667766554 5567777777666665543 5677777777888999999999999999998
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCcchhhHHHHHHHHhcCCCHHHHHHHHHH-------
Q 043204 288 LIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRT----KGFWPSLVMYEAKLAALFKDGMVDEALEVIEE------- 356 (504)
Q Consensus 288 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------- 356 (504)
+...+. +...|-......-..|+.-+...+|..--. .|--++..-|-.........|+.++-+...++
T Consensus 877 qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 876443 444554443333344877788888776222 23333444443333444455555443332222
Q ss_pred ---HHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHH----HHHHHhhcCcHHHHHHHHHHH
Q 043204 357 ---EMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGI----LVDGLCRDGRFLEASRVLEEM 429 (504)
Q Consensus 357 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~~A~~~~~~~ 429 (504)
... +.+.+...|.......-+.+.+..|.+...+...-...+-+...|+. +.+.++..|.++.|..-+...
T Consensus 956 l~~yf~--~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~ 1033 (1238)
T KOG1127|consen 956 LSYYFL--GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE 1033 (1238)
T ss_pred HHHHHh--cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc
Confidence 111 22344556666655556666666666666654422122334444443 233344455555444333221
Q ss_pred HhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHhcCCCchhHHHHHHHHh
Q 043204 430 LIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQ-AKLPDI-SVWSSLVASVCCNTADLNVCRKTLEQL 500 (504)
Q Consensus 430 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~ 500 (504)
... .+...-..-+. ..-.|+++++.+.|+++..- +-..+. +....++-+....++ .+.|...+-+.
T Consensus 1034 ~~e---vdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~-k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1034 WME---VDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQ-KNDAQFLLFEV 1101 (1238)
T ss_pred chh---HHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhccc-chHHHHHHHHH
Confidence 110 11111111111 13346777777777777631 111222 233333333344444 55555554443
No 100
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.94 E-value=2.8e-06 Score=78.75 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=67.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC
Q 043204 303 AIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGN 382 (504)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (504)
+.+......+.+|+.+++.++++.. -..-|..+.+.|...|+++.|.++|-+ - + .++-.|..|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e-~-------~--~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTE-A-------D--LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHh-c-------c--hhHHHHHHHhcccc
Confidence 4445555778888888887776542 334566777788888888888887764 1 1 34455677888888
Q ss_pred hHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHH
Q 043204 383 SAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVL 426 (504)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 426 (504)
++.|.++-.+.. |-......|-+-..-.-+.|++.+|.+++
T Consensus 807 w~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 807 WEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 888877776654 32333344444333344455555555444
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=2.7e-05 Score=75.01 Aligned_cols=318 Identities=13% Similarity=0.120 Sum_probs=177.3
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 043204 12 TYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYA 91 (504)
Q Consensus 12 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
+....++...+-+.+-+++++++.-....+.-+...-|.|+-...+. +..+..+..+++...+ -|+ +...+.
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai 1059 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAI 1059 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHh
Confidence 44455666666666666666666544322333333344444333333 3445555555555443 222 233344
Q ss_pred hcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHH
Q 043204 92 RAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLAL 171 (504)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 171 (504)
..+-+++|..+|...- .+..+.+.|+. .-+.++.|.+.-++.. ....|..+..+-.+.|.+.+|.
T Consensus 1060 ~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHH
Confidence 5555666666665432 12222233332 2355666666555543 2346788888888888888887
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 043204 172 HVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKI 251 (504)
Q Consensus 172 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 251 (504)
+-|-+.. |+..|..++....+.|.|++-..++... ++...+|.+. ..|+-+|++.++..+..+++.
T Consensus 1125 eSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~Ma----Rkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-- 1190 (1666)
T KOG0985|consen 1125 ESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMA----RKKVREPYID--SELIFAYAKTNRLTELEEFIA-- 1190 (1666)
T ss_pred HHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHH----HHhhcCccch--HHHHHHHHHhchHHHHHHHhc--
Confidence 7665433 6677888888888888888888877766 4444444433 467778888888776655542
Q ss_pred HHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcch
Q 043204 252 LRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSL 331 (504)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 331 (504)
.++......+..-|...+.++.|.-++. +..-|..+...+...|+++.|...-++.- +.
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ 1249 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKAN------ST 1249 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc------ch
Confidence 1233333334555666666776666553 33456666667777777777665544332 44
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043204 332 VMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKM 393 (504)
Q Consensus 332 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 393 (504)
.||..+-.+|...+.+.-|. |...++-....-...++..|-..|-+++.+.+++..
T Consensus 1250 ktWK~VcfaCvd~~EFrlAQ------iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLAQ------ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hHHHHHHHHHhchhhhhHHH------hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 56666656665555444331 222222333334455555566666666655555543
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=1.5e-07 Score=80.31 Aligned_cols=181 Identities=10% Similarity=-0.039 Sum_probs=108.7
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHH---HHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDS---VFATAI 87 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~ 87 (504)
+-.+...+...|++++|...|+++...+|+-.....++..+..++.+.|++++|...++.+.+.. +.+.. ++..+.
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~g 114 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYYLRG 114 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHHHHH
Confidence 34455666677777777777777777665421122456666777777777777777777777654 22222 344444
Q ss_pred HHHHhc--------CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHH
Q 043204 88 RTYARA--------GQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMD 159 (504)
Q Consensus 88 ~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 159 (504)
.++... |+++.|.+.|+.+.+..+.. ...+..+... +..... . ......+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~~----~~~~~~------~---------~~~~~~~a~ 174 (235)
T TIGR03302 115 LSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKKRM----DYLRNR------L---------AGKELYVAR 174 (235)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHHHH----HHHHHH------H---------HHHHHHHHH
Confidence 444433 56677777777766543221 1111111100 000000 0 001124566
Q ss_pred HHhhcCCHHHHHHHHHHhhhCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 160 VLCQCRRSDLALHVFQEMDFQGC--YPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
.|.+.|++++|...++...+... +.....+..+..++.+.|++++|..+++.+
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 78889999999999998887621 123467888889999999999999988877
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=3e-06 Score=79.49 Aligned_cols=231 Identities=17% Similarity=0.127 Sum_probs=149.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcC-C-------CCccHHHHHHHHH
Q 043204 17 IIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGD-S-------CECKDSVFATAIR 88 (504)
Q Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~~~~~~~~~~l~~ 88 (504)
.|..-|+.+.|.+..+.+. +...|..+.+.|.+.++.+-|.-.+..|... | ...+...-.-..-
T Consensus 737 fyvtiG~MD~AfksI~~Ik--------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAv 808 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAV 808 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHH
Confidence 3556788899988877765 4467999999999999998887777766531 1 1111122223333
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHH
Q 043204 89 TYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSD 168 (504)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 168 (504)
.....|.+++|+.+|.+-+..+ .|=+.|...|.+++|.++-+.-. .++. -.||..-...+-..+|.+
T Consensus 809 LAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~D---RiHL-r~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKD---RIHL-RNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcc---ceeh-hhhHHHHHHHHHhhccHH
Confidence 4467789999999998877643 33456677899999988775432 1221 235555666666778888
Q ss_pred HHHHHHHHhhh----------CC---------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHH
Q 043204 169 LALHVFQEMDF----------QG---------CYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYR 229 (504)
Q Consensus 169 ~a~~~~~~~~~----------~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 229 (504)
.|++.|++... .. -..|...|.......-..|+.+.|+.+|... .-|.
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-------------~D~f 942 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-------------KDYF 942 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-------------hhhh
Confidence 88888765321 11 0123333444444445678888888887755 2355
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHH
Q 043204 230 TLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEAL 288 (504)
Q Consensus 230 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 288 (504)
++++..|-.|+.++|..+-++- .+......+...|...|++.+|..+|.+..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6777777778888887776642 333344455777888888888888887664
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=2.1e-06 Score=85.03 Aligned_cols=134 Identities=10% Similarity=0.079 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Q 043204 298 SYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGL 377 (504)
Q Consensus 298 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (504)
.|..|...|.+.+..++|.++++.|.+. +......|...+..+.+.++-+.|..++.+++....-+-......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 3444444444445555555555555443 112344444444555555554555555554444332111222233333333
Q ss_pred HhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCc
Q 043204 378 CDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSY 434 (504)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 434 (504)
.+.|+.+++..+|+..... .+.....|+.+++.-.++|+.+.+..+|++....++
T Consensus 1611 Fk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 4445555555555544432 122233445555555555555555555555544443
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=0.0001 Score=71.34 Aligned_cols=382 Identities=11% Similarity=0.114 Sum_probs=210.7
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCC--CCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDS--CECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTL 121 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
|+..-+....++...+-+.+.+++++++.-.. +..+...-|.|+-..++ -+.....+..+++-..+ .| .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------hH
Confidence 44445555666666666677777777665332 11122223333333333 34555555555554443 12 23
Q ss_pred HHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC
Q 043204 122 LKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRR 201 (504)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 201 (504)
.......+-+++|..+|++... +....+.|+. .-+..+.|.+.-++.. .+..|+.+..+-.+.|.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~------n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM------NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc------cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 4455566677777777776531 2333344443 2366677766665554 34568888888888888
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHH
Q 043204 202 LNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAK 281 (504)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 281 (504)
+.+|.+-|-+. .|...|..+++...+.|.+++-.+++.-..+....|. .-+-++-++++.++..+.+
T Consensus 1120 v~dAieSyika----------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~---id~eLi~AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1120 VKDAIESYIKA----------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY---IDSELIFAYAKTNRLTELE 1186 (1666)
T ss_pred hHHHHHHHHhc----------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc---chHHHHHHHHHhchHHHHH
Confidence 88887776543 1566788888888888888888887776666543332 2222333445555444443
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 043204 282 SLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKG 361 (504)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 361 (504)
+++ ..|+......+.+-|...+.++.|.-+|. +..-|..|...+...|+++.|...-++
T Consensus 1187 ~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRK----- 1245 (1666)
T KOG0985|consen 1187 EFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARK----- 1245 (1666)
T ss_pred HHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence 332 23566666666666666666666666654 333456666666777777776655443
Q ss_pred CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchH
Q 043204 362 TFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETY 441 (504)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 441 (504)
-.+..||..+-.+|...+.+..| +|... ++.....-..-++.-|-..|-+++-..+++...... +.....|
T Consensus 1246 --Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmf 1316 (1666)
T KOG0985|consen 1246 --ANSTKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMF 1316 (1666)
T ss_pred --ccchhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHH
Confidence 23555777766666666554433 22211 222333445667777777777777777776554321 2233445
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 043204 442 NVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQ 499 (504)
Q Consensus 442 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 499 (504)
+-|.-.|++- ++++..+-++-... ....-.++++ |.+..-|.+..=++.+
T Consensus 1317 TELaiLYsky-kp~km~EHl~LFws------RvNipKviRA-~eqahlW~ElvfLY~~ 1366 (1666)
T KOG0985|consen 1317 TELAILYSKY-KPEKMMEHLKLFWS------RVNIPKVIRA-AEQAHLWSELVFLYDK 1366 (1666)
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHH------hcchHHHHHH-HHHHHHHHHHHHHHHh
Confidence 5555555443 34554444444432 1223345666 3333336665555443
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.87 E-value=2e-05 Score=75.76 Aligned_cols=421 Identities=13% Similarity=0.008 Sum_probs=226.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHH
Q 043204 22 KSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVS 101 (504)
Q Consensus 22 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 101 (504)
++...|+..|=+..+.+|. -...|..|...|....+...|.+.|+...+.+ ..+..........|++..+++.|..
T Consensus 472 K~~~~al~ali~alrld~~---~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS---LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHH
Confidence 3467788888777777655 34578888888887778888888888888776 6666778888888888888888887
Q ss_pred HHHHhhhCCCC-ccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC
Q 043204 102 LFKNLSQFNCV-NWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ 180 (504)
Q Consensus 102 ~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (504)
+.-..-+.... .-...|....-.|...++...|..-|+..... .+.|...|..+..+|.++|.+..|.++|.+....
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 74333222110 11122333444566778888888888877643 2446777888888888888888888888877664
Q ss_pred CCCCCHhhHHHHH--HHHHhcCCHHHHHHHHHHHHHHHhh--CCCCcCHHHHHHHHHHHHhcCchhHHHHHHHH------
Q 043204 181 GCYPDRESYHILM--KGLCNDRRLNEATHLLYSMFWRISQ--KGSGEDIVIYRTLLFALCDQGKIQDAMQILEK------ 250 (504)
Q Consensus 181 ~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------ 250 (504)
.|+ .+|.... -.-+..|.+.+++..+..+...... .+..--..++..+...+.-.|-..++.+++++
T Consensus 626 --rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 626 --RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred --CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 333 2232222 2235677788887777766422111 11111122333333333323322333333322
Q ss_pred -HHHcCCCCCcchhhhhhcccc-----------------------CCCCCh---H---HHHHHHHHHHHcCCCCChhhHH
Q 043204 251 -ILRKGLKAPKSRRHRIDLCPC-----------------------NDGEDI---E---GAKSLINEALIRGGIPSLASYS 300 (504)
Q Consensus 251 -~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~ 300 (504)
...... .++.....++...| ...+.. + .+.+.+-.-++. ..+..+|.
T Consensus 703 ~~l~h~~-~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~Wy 779 (1238)
T KOG1127|consen 703 VSLIHSL-QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWY 779 (1238)
T ss_pred HHHHHhh-hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHH
Confidence 222211 01111111111111 000100 1 111111111111 11234444
Q ss_pred HHHHHHHhc--------CChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHH
Q 043204 301 AMAIDLYNE--------GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNI 372 (504)
Q Consensus 301 ~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 372 (504)
.+...|.+. .+...|+..+.+..+..-. +..+|+.|.-. ...|++.-+...|-+..... +....+|..
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se--p~~~~~W~N 855 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE--PTCHCQWLN 855 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--ccchhheec
Confidence 444444441 2223566666666554222 55566655544 66677777766665422222 345567777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHhhcCcHHHHHHHHHHHHh----cCcCCCcchHHHHHHH
Q 043204 373 LLKGLCDAGNSAVAVMYLKKMSKQVGCVA-NGETYGILVDGLCRDGRFLEASRVLEEMLI----RSYWPCVETYNVLIRG 447 (504)
Q Consensus 373 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~ 447 (504)
+.-.+....+++.|...|...+. +.| |...|-.........|+.-++..+|..--+ .|-.|...-|-.....
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 77777888888888888888764 344 344555444445566777777777765222 2333444444444444
Q ss_pred HHccCCHHHHHHHH
Q 043204 448 LCSIGKQYEAVMWL 461 (504)
Q Consensus 448 ~~~~g~~~~a~~~~ 461 (504)
....|+.++-+...
T Consensus 933 h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 933 HLQNGNIEESINTA 946 (1238)
T ss_pred HHhccchHHHHHHh
Confidence 55556655544333
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.86 E-value=2.4e-06 Score=79.12 Aligned_cols=211 Identities=13% Similarity=0.098 Sum_probs=133.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhcccc
Q 043204 192 LMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPC 271 (504)
Q Consensus 192 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (504)
+...+...|-...|..++++. ..|..++.+|...|+..+|..+..+..++
T Consensus 404 laell~slGitksAl~I~Erl-------------emw~~vi~CY~~lg~~~kaeei~~q~lek----------------- 453 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL-------------EMWDPVILCYLLLGQHGKAEEINRQELEK----------------- 453 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH-------------HHHHHHHHHHHHhcccchHHHHHHHHhcC-----------------
Confidence 344445555556666665544 34555566666666666666665555442
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHH
Q 043204 272 NDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEAL 351 (504)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 351 (504)
.|+...|..+.+..-...-+++|.++.+..-.+ .-..+.......++++++.
T Consensus 454 ---------------------~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~ 505 (777)
T KOG1128|consen 454 ---------------------DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEAD 505 (777)
T ss_pred ---------------------CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHH
Confidence 245555555555444444455566555543322 1112222233467788888
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHhhcCcHHHHHHHHHHHH
Q 043204 352 EVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVA-NGETYGILVDGLCRDGRFLEASRVLEEML 430 (504)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 430 (504)
+.|+..+..... ...+|-.+..+..+.++.+.|.+.|..... ..| +...||.+-.+|.+.|+..+|...+.+..
T Consensus 506 ~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 506 KHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred HHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 888876666543 334676666677778888888888888774 344 45678888888888888888888888888
Q ss_pred hcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 431 IRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 431 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
+.+ .-+...|...+....+.|.++.|++.+.++.+
T Consensus 581 Kcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 581 KCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 776 45566677777777788888888888887774
No 108
>PLN02789 farnesyltranstransferase
Probab=98.84 E-value=4.1e-06 Score=73.48 Aligned_cols=213 Identities=11% Similarity=0.086 Sum_probs=156.1
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccC-ChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 12 TYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESN-RITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 12 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
..+-.++...+..++|+.+.+.+.+.+|+ +..+|+....++...| ++++++..++.+.+.. +.+..+|+.....+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 34556666788999999999999999887 7778887777777777 6799999999999887 66777788777667
Q ss_pred HhcCCh--hHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhc---C
Q 043204 91 ARAGQL--NEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQC---R 165 (504)
Q Consensus 91 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 165 (504)
.+.|+. ++++..++.+.+.+. -+..+|+.....+...|++++++..++++.+... .+..+|+.....+.+. |
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~--~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV--RNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC--CchhHHHHHHHHHHhccccc
Confidence 677753 678889988888774 4477888888888899999999999999986532 2455666665555443 2
Q ss_pred C----HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh
Q 043204 166 R----SDLALHVFQEMDFQGCYPDRESYHILMKGLCND----RRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCD 237 (504)
Q Consensus 166 ~----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (504)
. .+..+++..++..... -|...|+.+...+... +...+|.+.+.+. .+.+ ..+......|++.|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~----~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV----LSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHh----hccc-CCcHHHHHHHHHHHHh
Confidence 2 2466777766666543 3677888888777663 3445677777766 4433 2356677778888875
No 109
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.81 E-value=5.4e-05 Score=63.99 Aligned_cols=330 Identities=11% Similarity=0.015 Sum_probs=182.3
Q ss_pred hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHH-HHHHHHH
Q 043204 45 GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQ-SFNTLLK 123 (504)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~ 123 (504)
+.-..-+...+...|++..|+.-|....+.+ +.+-.++..-...|...|+-..|+.-|....+. +||-. .-..-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 3334455666666677777777776666553 222233444455666666666666666666554 34311 1111122
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLN 203 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 203 (504)
.+.+.|.++.|..=|+...... |+. +....++.+.--.++-. .....+..+...|+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~---~s~---~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHE---PSN---GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcC---CCc---chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchh
Confidence 4455566666666665555331 110 11111111111111111 1122333456678888
Q ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHH
Q 043204 204 EATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSL 283 (504)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 283 (504)
.|+.....+ .+. .+.|...|..-..+|...|++..|+.-++..-+. ..++.....-+..++-..|+.+.++..
T Consensus 173 ~ai~~i~~l----lEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 173 NAIEMITHL----LEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred hHHHHHHHH----Hhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 888887777 333 2347777888888888888888888777766554 223333333334445555555555555
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 043204 284 INEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTF 363 (504)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 363 (504)
+++.++.+ |+-..+-.. | ..+.+..+.++.|. .....+++.++++..+..|+....
T Consensus 246 iRECLKld--pdHK~Cf~~---Y---KklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 246 IRECLKLD--PDHKLCFPF---Y---KKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred HHHHHccC--cchhhHHHH---H---HHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCc
Confidence 55555432 221111100 0 11112222222222 234456777788888876665432
Q ss_pred Cc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q 043204 364 VP--TVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVAN-GETYGILVDGLCRDGRFLEASRVLEEMLIRS 433 (504)
Q Consensus 364 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 433 (504)
.+ ....+..+-.++...|++.+|++...++.. +.|+ ..++.--..+|.-...++.|..-|+...+.+
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 11 122344555667778999999999998874 4555 6777777788888888999999999888864
No 110
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=0.00018 Score=68.20 Aligned_cols=167 Identities=10% Similarity=0.096 Sum_probs=96.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCC
Q 043204 16 QIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQ 95 (504)
Q Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (504)
......|-+++|+.+|++..+. ..|=..|-..|.+++|.++-+.-.+..+ ..||.....-+-..+|
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~-----------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY-----------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhcc
Confidence 3344677788888888777653 2333455566778888777766554432 3345555555556667
Q ss_pred hhHHHHHHHHh----------hhCCCC---------ccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHH
Q 043204 96 LNEAVSLFKNL----------SQFNCV---------NWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNL 156 (504)
Q Consensus 96 ~~~a~~~~~~~----------~~~~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (504)
.+.|++.|+.. ...+++ .+...|.-...-+-..|+.+.|+.+|.... -|-+
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----------D~fs 943 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----------DYFS 943 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh----------hhhh
Confidence 77777776632 221110 111222222223334688888888887654 2355
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 157 LMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
+++..+-.|+.++|-++-++-. |......|.+.|-..|++.+|..+|.+.
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred heeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6666666677777766655432 4455556666676777777766666554
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=2.3e-06 Score=77.13 Aligned_cols=250 Identities=17% Similarity=0.105 Sum_probs=184.3
Q ss_pred HHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 043204 234 ALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIV 313 (504)
Q Consensus 234 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 313 (504)
-+.+.|++.+|.-.|+..++. .|.....+..+.......++-..|+..+.+.++..+. +......|...|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 356788899999999988887 5677778888888888888889999999999887655 6777778888888889889
Q ss_pred HHHHHHHHHHHCCCCc--------chhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHH
Q 043204 314 EGDKVLDEMRTKGFWP--------SLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAV 385 (504)
Q Consensus 314 ~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (504)
.|...++..+...++- +...-.. ..+.....+....++|-++....+..+|..+...|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999988886643210 0000000 12233334556677777767777756777778888878999999999
Q ss_pred HHHHHHHHHHhcCCCC-chhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCC-cchHHHHHHHHHccCCHHHHHHHHHH
Q 043204 386 AVMYLKKMSKQVGCVA-NGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPC-VETYNVLIRGLCSIGKQYEAVMWLEE 463 (504)
Q Consensus 386 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 463 (504)
|.+.|+.... ++| |..+||-|...++...+.++|...|.+.++. +|+ +.+..-|.-+|...|.+++|.+.|=.
T Consensus 449 aiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 449 AVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999985 466 4578999999999999999999999999985 465 44555677789999999999998877
Q ss_pred HHHcC---------CCCCHHHHHHHHHHHhcCCCchhHHH
Q 043204 464 MISQA---------KLPDISVWSSLVASVCCNTADLNVCR 494 (504)
Q Consensus 464 ~~~~~---------~~p~~~~~~~ll~~~~~~~~~~~~a~ 494 (504)
.+... -.++..+|.+|-.++...+. .|.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~-~D~l~ 562 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR-SDLLQ 562 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCC-chHHH
Confidence 66321 11234577777766554444 55343
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=7.9e-06 Score=75.86 Aligned_cols=232 Identities=13% Similarity=0.086 Sum_probs=125.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 043204 154 LNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLF 233 (504)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (504)
-..+...+...|-...|..+|+++.. |.-+|.+|...|+..+|..+..+- .+ -+||...|..+.+
T Consensus 401 q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~----le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQE----LE--KDPDPRLYCLLGD 465 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHH----hc--CCCcchhHHHhhh
Confidence 34444555555555555555554432 334455555555555555554433 22 3445555555555
Q ss_pred HHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 043204 234 ALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIV 313 (504)
Q Consensus 234 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 313 (504)
.....--+++|.++.++.-.. ....+.....+.++++++.+.|+...+.++. ...+|-...-+..+.++++
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhH
Confidence 544444455555555443221 0011111222345555555555555544332 4455655555666667777
Q ss_pred HHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043204 314 EGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKM 393 (504)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 393 (504)
.+.+.|.......+. +...||.+-.+|.+.++..+|...+.++++.. .-+...|...+....+.|.+++|.+.+.++
T Consensus 537 ~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 777777777664322 55677777777777777777777777744443 334445666666667777777777777776
Q ss_pred HHhcCCCCchhhHHHHHHH
Q 043204 394 SKQVGCVANGETYGILVDG 412 (504)
Q Consensus 394 ~~~~~~~p~~~~~~~l~~~ 412 (504)
........|..+...++..
T Consensus 614 l~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHhhhhcccchhhHHHHHH
Confidence 6542222344444444433
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=1e-06 Score=71.49 Aligned_cols=177 Identities=14% Similarity=0.053 Sum_probs=128.4
Q ss_pred HHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 043204 27 ALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNL 106 (504)
Q Consensus 27 A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (504)
+...+-......|+ |... ..+-..+...|+-+....+........ +.|.......+...++.|++..|+..|.+.
T Consensus 52 a~~al~~~~~~~p~---d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 52 AAAALGAAVLRNPE---DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred HHHHHHHHHhcCcc---hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 44444444444555 5555 556677777788888777777755443 455566677888888888888888888888
Q ss_pred hhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCH
Q 043204 107 SQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDR 186 (504)
Q Consensus 107 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 186 (504)
.... ++|..+|+.+.-+|.+.|+++.|..-|.+..+-.+-.| ...|.|.-.+.-.|+.+.|..++......+.. |.
T Consensus 127 ~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~ 202 (257)
T COG5010 127 ARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP--SIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DS 202 (257)
T ss_pred hccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-ch
Confidence 7765 56778888888888888888888888888776544444 34577777788888888888888888776432 66
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 187 ESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
..-..+.......|+++.|..+...-
T Consensus 203 ~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 203 RVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHHhhcCChHHHHhhcccc
Confidence 66777777788888888888887654
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.73 E-value=1.9e-08 Score=54.79 Aligned_cols=32 Identities=41% Similarity=0.822 Sum_probs=16.0
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 181 GCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 181 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.73 E-value=1e-05 Score=80.50 Aligned_cols=232 Identities=12% Similarity=0.081 Sum_probs=153.5
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcc---hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhh
Q 043204 112 VNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKS---RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRES 188 (504)
Q Consensus 112 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 188 (504)
+.+...|-..|......++.++|.++++++....++.- -...|.++++.-..-|.-+...++|++..+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44456777778888888899999998888875433222 2345667777666678888899999998875 223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhc
Q 043204 189 YHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDL 268 (504)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 268 (504)
|..|...|.+.+.+++|.++++.|+++ .+ .....|...+..+.+..+-+.|..++.+.++.- |...
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK---F~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l--Pk~e------- 1598 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK---FG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSL--PKQE------- 1598 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH---hc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--chhh-------
Confidence 888899999999999999999999643 33 356788888999999999899999998887752 1100
Q ss_pred cccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHH
Q 043204 269 CPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVD 348 (504)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 348 (504)
........+..-++.|+.+.+..+|+......++ -...|+..+++-.+.|+.+
T Consensus 1599 --------------------------Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1599 --------------------------HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred --------------------------hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHH
Confidence 1222333333444556666666677666665333 4456666777777777777
Q ss_pred HHHHHHHHHHhcCCCCccH--HHHHHHHHHHHhcCChHHHH
Q 043204 349 EALEVIEEEMVKGTFVPTV--RVYNILLKGLCDAGNSAVAV 387 (504)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~ 387 (504)
.+..+|++ ....++.|-- ..|...+..--..|+-+.++
T Consensus 1652 ~vR~lfeR-vi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1652 YVRDLFER-VIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHHHHHH-HHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 77777776 4444444432 34555555444455544433
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=4.2e-06 Score=68.00 Aligned_cols=168 Identities=15% Similarity=0.091 Sum_probs=134.2
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHH
Q 043204 77 ECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNL 156 (504)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (504)
|-|..+ ..+-..+...|+-+....+........ ..+....+.++....+.|++..|...|++.... -++|...|+.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~ 139 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNL 139 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhH
Confidence 345555 666677788888888888877755433 344566677899999999999999999999754 4678899999
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 043204 157 LMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALC 236 (504)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (504)
+.-+|.+.|+.+.|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++... ...+ .-|..+-..+.....
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a----~l~~-~ad~~v~~NLAl~~~ 213 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPA----YLSP-AADSRVRQNLALVVG 213 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHH----HhCC-CCchHHHHHHHHHHh
Confidence 999999999999999999998886432 5567888888899999999999999887 4443 336777788889999
Q ss_pred hcCchhHHHHHHHHHHHc
Q 043204 237 DQGKIQDAMQILEKILRK 254 (504)
Q Consensus 237 ~~g~~~~a~~~~~~~~~~ 254 (504)
..|+++.|.++...-...
T Consensus 214 ~~g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 214 LQGDFREAEDIAVQELLS 231 (257)
T ss_pred hcCChHHHHhhccccccc
Confidence 999999999988776553
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.73 E-value=1.2e-05 Score=78.83 Aligned_cols=238 Identities=10% Similarity=0.011 Sum_probs=152.5
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
+...+..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++...+..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 56678889999989999999999998777664 33334455555567777775555544 2222
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLN 203 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 203 (504)
......++.....+...+.. ..-+...+..+..+|-+.|+.++|..+++++.+.. +-|+...|.+...|+.. +.+
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22233333223333333332 12234466778889999999999999999999887 44788889999988888 999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHH
Q 043204 204 EATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSL 283 (504)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 283 (504)
+|.+++.+... .+...+++.++.+++.++...... +.+.-..+
T Consensus 167 KA~~m~~KAV~-------------------~~i~~kq~~~~~e~W~k~~~~~~~------------------d~d~f~~i 209 (906)
T PRK14720 167 KAITYLKKAIY-------------------RFIKKKQYVGIEEIWSKLVHYNSD------------------DFDFFLRI 209 (906)
T ss_pred HHHHHHHHHHH-------------------HHHhhhcchHHHHHHHHHHhcCcc------------------cchHHHHH
Confidence 99999887732 156666788888888888776432 23333333
Q ss_pred HHHHHHc-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHh
Q 043204 284 INEALIR-GGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALF 342 (504)
Q Consensus 284 ~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (504)
.+.+... +...-..++-.+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 210 ~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 210 ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 3333322 21223344455555566667788888888888776443 5555556666554
No 118
>PF12854 PPR_1: PPR repeat
Probab=98.72 E-value=1.7e-08 Score=54.94 Aligned_cols=32 Identities=44% Similarity=0.847 Sum_probs=16.5
Q ss_pred CCCCchhhHHHHHHHHhhcCcHHHHHHHHHHH
Q 043204 398 GCVANGETYGILVDGLCRDGRFLEASRVLEEM 429 (504)
Q Consensus 398 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 429 (504)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.71 E-value=4.1e-06 Score=71.40 Aligned_cols=188 Identities=7% Similarity=-0.055 Sum_probs=124.5
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccH---HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccH--HHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKD---SVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWT--QSF 118 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 118 (504)
....+..+...+...|++++|...|+++.... +.+. .++..+..++...|++++|...++.+.+....... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 55667777888888999999999998887764 3222 45677788888889999999999988765532221 234
Q ss_pred HHHHHHHHhc--------chHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHH
Q 043204 119 NTLLKEMVKE--------SKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYH 190 (504)
Q Consensus 119 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 190 (504)
..+...+... |+.+.|.+.|+.+....+.. ...+..+..... ... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS--EYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC--hhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 4444555543 67778888888776542221 111211111100 000 000 0112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 191 ILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 191 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
.+...+.+.|++++|...++....... +.+.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYP--DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCC--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678999999999999999842211 12335778899999999999999999999998765
No 120
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.66 E-value=0.00045 Score=66.20 Aligned_cols=453 Identities=15% Similarity=0.093 Sum_probs=256.2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChh
Q 043204 18 IKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLN 97 (504)
Q Consensus 18 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (504)
....+++.+|+...++..+++|. .+-..++.++ .+.+.|+.++|..+++.....+ ..|..|...+-.+|...+..+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPN-ALYAKVLKAL--SLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHH--HHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhh
Confidence 34567899999999999999774 2222233333 3578899999999999988777 458889999999999999999
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHH----HHHHHHHhhcCCCCcchHHHHHHHHHHHhhcC--------
Q 043204 98 EAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEA----AHILFLRSCYGWEVKSRIQSLNLLMDVLCQCR-------- 165 (504)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------- 165 (504)
+|..+|+...+.. |+..-...+..+|++.+.+.+ |+++++.. +.+...+-++++.+...-
T Consensus 95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~------pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNF------PKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CcccchHHHHHHHHHHhccCCccccc
Confidence 9999999998765 446677788888998888765 55555533 223455556666555431
Q ss_pred --CHHHHHHHHHHhhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchh
Q 043204 166 --RSDLALHVFQEMDFQG-CYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQ 242 (504)
Q Consensus 166 --~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 242 (504)
-..-|.+.++.+.+.+ -.-+..-...-...+...|++++|++++..=. .+.-..-+...-+.-+..+...+++.
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~l---a~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITL---AEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHH---HHhccccchHHHHHHHHHHHHhcChH
Confidence 1234666777776653 11111112222334567889999999984321 22223334455556677788889999
Q ss_pred HHHHHHHHHHHcCCCCCc---chhhhhhccc--------cCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--
Q 043204 243 DAMQILEKILRKGLKAPK---SRRHRIDLCP--------CNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNE-- 309 (504)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-- 309 (504)
+..++-.++...+..... ..+..++-.. ....+..+...+...+....+ ....|-+-+.+..+.
T Consensus 244 ~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~ 320 (932)
T KOG2053|consen 244 ELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKL 320 (932)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcc
Confidence 999988888887643100 0111111111 111222222222222222221 112233333333332
Q ss_pred -CChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHH-------HHHHHHHHHHhcC
Q 043204 310 -GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVR-------VYNILLKGLCDAG 381 (504)
Q Consensus 310 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~ 381 (504)
|+.+++...|-+ +-| +...|..=+..|...=..+.-..++...... .++.. -+...+..-...|
T Consensus 321 ~gd~ee~~~~y~~--kfg---~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G 392 (932)
T KOG2053|consen 321 IGDSEEMLSYYFK--KFG---DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLG 392 (932)
T ss_pred cCChHHHHHHHHH--HhC---CCcHhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhh
Confidence 666655443322 222 2233444445555555555656666642222 22221 1222222222334
Q ss_pred C-----hHHHHHHHHHHHHhc--C------CCCchh---------hHHHHHHHHhhcCcHH---HHHHHHHHHHhcCcCC
Q 043204 382 N-----SAVAVMYLKKMSKQV--G------CVANGE---------TYGILVDGLCRDGRFL---EASRVLEEMLIRSYWP 436 (504)
Q Consensus 382 ~-----~~~a~~~~~~~~~~~--~------~~p~~~---------~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~ 436 (504)
. .+....++.++...+ | +-|+.. +.+.|++.|.+.++.. +|.-+++...... +.
T Consensus 393 ~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~h 471 (932)
T KOG2053|consen 393 LYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PH 471 (932)
T ss_pred ccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-Cc
Confidence 2 233344443332221 2 223332 3467889999988866 3444444444432 23
Q ss_pred CcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 043204 437 CVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQ 499 (504)
Q Consensus 437 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 499 (504)
|..+=-.+|+.|.-.|-+..|.++++.+--..+..|...+..+-. ....+.+..+...+..
T Consensus 472 nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~--~~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 472 NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRR--AETSGRSSFASNTFNE 532 (932)
T ss_pred cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHH--HHhcccchhHHHHHHH
Confidence 334445578899999999999999998876666666655544333 2333336555555443
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=1.1e-06 Score=71.60 Aligned_cols=157 Identities=7% Similarity=0.001 Sum_probs=120.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAG 94 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (504)
+..|...|+++.+....+..... . ..+...++.+++...++...+.+ +.|...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~--~------------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP--L------------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc--c------------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
Confidence 46788899988876554333211 1 12223677788888888888887 788889999999999999
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHHHHHH-Hhcch--HHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHH
Q 043204 95 QLNEAVSLFKNLSQFNCVNWTQSFNTLLKEM-VKESK--LEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLAL 171 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 171 (504)
+++.|...|+...+.+. .+...+..+..++ ...|+ .++|..++++.....+. +..++..+...+.+.|++++|.
T Consensus 88 ~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~--~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 88 DYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN--EVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHcCCHHHHH
Confidence 99999999999988773 3567777777764 67677 59999999999876433 5567788899999999999999
Q ss_pred HHHHHhhhCCCCCCHhhHH
Q 043204 172 HVFQEMDFQGCYPDRESYH 190 (504)
Q Consensus 172 ~~~~~~~~~~~~p~~~~~~ 190 (504)
..|+++.+.. +|+..-+.
T Consensus 165 ~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 165 ELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHHHHHHhhC-CCCccHHH
Confidence 9999998864 34544443
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=1.4e-06 Score=84.29 Aligned_cols=131 Identities=11% Similarity=0.203 Sum_probs=80.2
Q ss_pred CCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHH
Q 043204 8 LLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAI 87 (504)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (504)
...+-.|..+..+.|.+++|..+++...+..|+ +...+..++.++.+.+++++|...+++..... +.+......+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd---~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD---SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 334445556666666666666666666666655 55666666666666666666666666666655 44445556666
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhc
Q 043204 88 RTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCY 143 (504)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (504)
.++.+.|++++|..+|+++...+ +.+..++..+...+...|+.++|...|++...
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666532 22345556666666666666666666666654
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=2.8e-05 Score=63.32 Aligned_cols=86 Identities=19% Similarity=0.129 Sum_probs=46.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC
Q 043204 306 LYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFK----DGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAG 381 (504)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (504)
+.+..+.+-|...+++|.+-. +..|.+.|..++.+ .+.+..|.-+|++ +... ..|+..+.+....++...|
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE-~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEE-LSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHH-Hhcc-cCCChHHHccHHHHHHHhc
Confidence 444455666666666666532 44455544444432 3445566666665 4332 2455555565555556666
Q ss_pred ChHHHHHHHHHHHHh
Q 043204 382 NSAVAVMYLKKMSKQ 396 (504)
Q Consensus 382 ~~~~a~~~~~~~~~~ 396 (504)
++++|..+++....+
T Consensus 222 ~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 222 RYEEAESLLEEALDK 236 (299)
T ss_pred CHHHHHHHHHHHHhc
Confidence 666666666665543
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.62 E-value=3e-05 Score=76.23 Aligned_cols=204 Identities=10% Similarity=0.072 Sum_probs=120.7
Q ss_pred CCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCcc--------
Q 043204 8 LLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECK-------- 79 (504)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------- 79 (504)
...+..|+..+...+++++|.++.+...+..|+ ....|..+...+.+.++..++..+ .+...- +.+
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~---~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~~~ve~ 104 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKK---SISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKWAIVEH 104 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc---ceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccchhHHHH
Confidence 345677899999999999999999999888775 555555555577777776666655 222211 111
Q ss_pred -----------HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCc
Q 043204 80 -----------DSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVK 148 (504)
Q Consensus 80 -----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (504)
..++..+..+|-+.|+.++|..+++++.+.+ +-++.+.|.+...|... ++++|..++.+....
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---- 178 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---- 178 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence 1344455555555566666666666666555 33455555666666555 666666555544321
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHH
Q 043204 149 SRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIY 228 (504)
Q Consensus 149 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 228 (504)
+...+++..+.+++.++.... |+ +++.-.++.+.+. ...+...-+.++
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ki~---~~~~~~~~~~~~ 226 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERKVL---GHREFTRLVGLL 226 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHHHH---hhhccchhHHHH
Confidence 444455555566555555542 11 1222222222221 111233335566
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHcC
Q 043204 229 RTLLFALCDQGKIQDAMQILEKILRKG 255 (504)
Q Consensus 229 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 255 (504)
-.+-..|-...+++++..+++.+++..
T Consensus 227 ~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 227 EDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 667777888888888888888888763
No 125
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=7.1e-05 Score=65.82 Aligned_cols=196 Identities=8% Similarity=-0.038 Sum_probs=124.5
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 043204 48 YASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAG-QLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMV 126 (504)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (504)
+..+-..+...++.++|+.+.+.+++.. +-+..+|+..-.++...| ++++++..++.+.+.+... ..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-yqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-YQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-hHHhHHHHHHHH
Confidence 3334444555678889999999988876 555566777777777777 6789999999988876544 455665555555
Q ss_pred hcchH--HHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc---CC
Q 043204 127 KESKL--EAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCND---RR 201 (504)
Q Consensus 127 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~ 201 (504)
+.|+. ++++.+++++.... +-+..+|+....++...|+++++++.++++.+.++. |...|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 55553 56777777776542 336777887778888888899999999988887644 566666665555443 22
Q ss_pred H----HHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc----CchhHHHHHHHHHHH
Q 043204 202 L----NEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQ----GKIQDAMQILEKILR 253 (504)
Q Consensus 202 ~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~ 253 (504)
. ++..+...++ ....+ -|...|+-+...+... +...+|.+.+.+..+
T Consensus 195 ~~~~~e~el~y~~~a----I~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 195 LEAMRDSELKYTIDA----ILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred ccccHHHHHHHHHHH----HHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 2 3455555444 33222 2455666665555542 223345555555443
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=1.7e-05 Score=64.80 Aligned_cols=162 Identities=10% Similarity=0.074 Sum_probs=118.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC
Q 043204 302 MAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAG 381 (504)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (504)
-+..|...|+++.+....+.+... . ..+...++.+++...++..+... +.+...|..+...|...|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCC
Confidence 345677889988875554322211 1 12223667788888888756655 567889999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCchhhHHHHHHH-HhhcCc--HHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHH
Q 043204 382 NSAVAVMYLKKMSKQVGCVANGETYGILVDG-LCRDGR--FLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAV 458 (504)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 458 (504)
++++|...|++..+. .+.+...+..+..+ +...|+ .++|.+++++..+.+ +-+...+..+...+.+.|++++|+
T Consensus 88 ~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai 164 (198)
T PRK10370 88 DYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAI 164 (198)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHH
Confidence 999999999999864 23356677777776 467777 599999999999975 346778888889999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH
Q 043204 459 MWLEEMISQAKLPDISVWSSLVAS 482 (504)
Q Consensus 459 ~~~~~~~~~~~~p~~~~~~~ll~~ 482 (504)
..|+++.+.. .|+..-. .++++
T Consensus 165 ~~~~~aL~l~-~~~~~r~-~~i~~ 186 (198)
T PRK10370 165 ELWQKVLDLN-SPRVNRT-QLVES 186 (198)
T ss_pred HHHHHHHhhC-CCCccHH-HHHHH
Confidence 9999999753 4554333 33343
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.61 E-value=9.3e-07 Score=68.08 Aligned_cols=109 Identities=6% Similarity=-0.075 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 043204 28 LKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLS 107 (504)
Q Consensus 28 ~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (504)
..+|++..+..|+ .+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+...
T Consensus 13 ~~~~~~al~~~p~------~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLSVDPE------TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHcCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567777776443 24456777778888888888888888776 6677778888888888888888888888888
Q ss_pred hCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC
Q 043204 108 QFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG 144 (504)
Q Consensus 108 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
+.+ +.+..++..+..++...|+.++|...|+.....
T Consensus 86 ~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 86 MLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred hcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 765 345677778888888888888888888887654
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=3.6e-06 Score=64.85 Aligned_cols=108 Identities=13% Similarity=-0.041 Sum_probs=67.6
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCC
Q 043204 66 EVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGW 145 (504)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 145 (504)
.+|++..+.. |+. +..+...+...|++++|...|+.....++ .+..++..+...+.+.|++++|...|++.....
T Consensus 14 ~~~~~al~~~--p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD--PET--VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC--HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455555442 332 33455666667777777777777666552 345666677777777777777777777776542
Q ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC
Q 043204 146 EVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ 180 (504)
Q Consensus 146 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (504)
+.+...+..+..++...|+.++|...|+...+.
T Consensus 89 --p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 --ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred --CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 234455666666777777777777777776664
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00024 Score=58.11 Aligned_cols=219 Identities=9% Similarity=0.051 Sum_probs=143.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAG 94 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (504)
++-+--.|++..++..-+...... -+...-..+-++|...|++.... ..+.... .|+......+......-+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~----~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK----TDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELES 86 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc----chhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcc
Confidence 455556788888887766665431 24444455567777777665333 2333222 333333333333333334
Q ss_pred ChhH-HHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHH
Q 043204 95 QLNE-AVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHV 173 (504)
Q Consensus 95 ~~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 173 (504)
+.+. ..++.+.+.......+......-...|...+++++|++...... +......=+..+.+..+.+-|.+.
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 33555556555555543444444557888899999999887632 222333334557788889999999
Q ss_pred HHHhhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHH
Q 043204 174 FQEMDFQGCYPDRESYHILMKGLCN----DRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILE 249 (504)
Q Consensus 174 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (504)
+++|.+- -+..|.+.|..++.+ .+.+.+|.-+|+++ .....|+..+.+-...++...|++++|..+++
T Consensus 160 lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~-----s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 160 LKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL-----SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHH-----hcccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 9999874 366788877777754 56788999999988 34477888899999999999999999999999
Q ss_pred HHHHcCC
Q 043204 250 KILRKGL 256 (504)
Q Consensus 250 ~~~~~~~ 256 (504)
+.+.+..
T Consensus 232 eaL~kd~ 238 (299)
T KOG3081|consen 232 EALDKDA 238 (299)
T ss_pred HHHhccC
Confidence 9988753
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.51 E-value=3.1e-05 Score=75.29 Aligned_cols=145 Identities=11% Similarity=-0.085 Sum_probs=108.2
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
++..+-.|..+..+.|+.++|..+++...+.. |.+......+..++.+.+++++|+..+++....++ .+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHH
Confidence 67778888888888888888888888888876 55666678888888888888888888888887763 33566677777
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILM 193 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 193 (504)
++.+.|++++|..+|+++.... +-+..++..+...+...|+.++|...|+...+.. .|....|+..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 8888888888888888887632 1235566777778888888888888888887642 23344444443
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=2e-05 Score=69.91 Aligned_cols=140 Identities=14% Similarity=0.053 Sum_probs=96.9
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcch
Q 043204 51 MIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESK 130 (504)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 130 (504)
..-.+...|++++|+..++.+.+.- |.|+..+......+.+.++.++|.+.++.+....+.. ....-.+..++.+.|+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~ 389 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCC
Confidence 3334556778888888888877664 5556666777778888888888888888877665332 4445567777888888
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043204 131 LEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLY 210 (504)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 210 (504)
..+|+.+++...... +.|...|..|..+|...|+..++.....+.. ...|+++.|...+.
T Consensus 390 ~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~------------------~~~G~~~~A~~~l~ 449 (484)
T COG4783 390 PQEAIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAEGY------------------ALAGRLEQAIIFLM 449 (484)
T ss_pred hHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHHHH------------------HhCCCHHHHHHHHH
Confidence 888888888776553 3345577888888888888877777665553 33466666666666
Q ss_pred HH
Q 043204 211 SM 212 (504)
Q Consensus 211 ~~ 212 (504)
..
T Consensus 450 ~A 451 (484)
T COG4783 450 RA 451 (484)
T ss_pred HH
Confidence 55
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.44 E-value=1e-05 Score=62.04 Aligned_cols=96 Identities=7% Similarity=0.011 Sum_probs=47.3
Q ss_pred hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 043204 45 GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKE 124 (504)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (504)
......+...+...|++++|.+.|+.+...+ +.+...+..+...+...|+++.|...++...+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3334444455555555555555555555444 3344455555555555555555555555554443 2223334444444
Q ss_pred HHhcchHHHHHHHHHHhh
Q 043204 125 MVKESKLEAAHILFLRSC 142 (504)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~ 142 (504)
+...|+++.|...|+...
T Consensus 95 ~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 95 LLALGEPESALKALDLAI 112 (135)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 445555555555554444
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.42 E-value=9.9e-06 Score=62.75 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=35.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccH--HHHHHHHHHHHhcCChhH
Q 043204 21 QKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKD--SVFATAIRTYARAGQLNE 98 (504)
Q Consensus 21 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 98 (504)
.+++..+...++.+.+.+|+......+.-.+...+...|++++|...|+.+......+.. .....+..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 444444444455555444432112222333334444445555555555554443311111 122333444444455555
Q ss_pred HHHHHHH
Q 043204 99 AVSLFKN 105 (504)
Q Consensus 99 a~~~~~~ 105 (504)
|+..++.
T Consensus 104 Al~~L~~ 110 (145)
T PF09976_consen 104 ALATLQQ 110 (145)
T ss_pred HHHHHHh
Confidence 5544443
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=0.0007 Score=60.55 Aligned_cols=240 Identities=14% Similarity=0.088 Sum_probs=155.7
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHhc--CCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCC--CccHHHHHHHHHH
Q 043204 15 SQIIKKQK-SPLTALKIFKEAKEK--YPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSC--ECKDSVFATAIRT 89 (504)
Q Consensus 15 ~~~~~~~~-~~~~A~~~~~~~~~~--~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 89 (504)
+..+.+.| ++..-.+.|+++... +.+ +| -..++..=.-..+..++...-+.+...+. .|+...+...+.+
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~-~~----p~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~ 283 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGG-QP----PEYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRA 283 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCC-CC----ChHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH
Confidence 44555666 556666777777742 211 11 12222222333455566666666664331 3455556666665
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHH
Q 043204 90 YARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDL 169 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 169 (504)
......-..+..++.+..+. .-...-|. ..-.+...|+.++|+..++.+... .+-|...+......+.+.++.++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~--~~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~ 358 (484)
T COG4783 284 KYEALPNQQAADLLAKRSKR--GGLAAQYG-RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKE 358 (484)
T ss_pred HhccccccchHHHHHHHhCc--cchHHHHH-HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHH
Confidence 54443333333333333331 11122232 333455778999999999998755 33456666777788999999999
Q ss_pred HHHHHHHhhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHH
Q 043204 170 ALHVFQEMDFQGCYPD-RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQIL 248 (504)
Q Consensus 170 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 248 (504)
|.+.++.+... .|+ ....-.+..++.+.|++++|..+++.. .. ..+-|...|..|.++|...|+..++..-.
T Consensus 359 A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~----~~-~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 359 AIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRY----LF-NDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHH----hh-cCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 99999999887 455 555666778899999999999999877 33 34557889999999999999999988888
Q ss_pred HHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHc
Q 043204 249 EKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIR 290 (504)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 290 (504)
.+.... .|.++.|...+....+.
T Consensus 432 AE~~~~-------------------~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 432 AEGYAL-------------------AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHh-------------------CCCHHHHHHHHHHHHHh
Confidence 776543 46788888877777665
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=4.7e-05 Score=58.39 Aligned_cols=117 Identities=12% Similarity=0.048 Sum_probs=81.6
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCC
Q 043204 67 VIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWE 146 (504)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 146 (504)
.|+...+.. +.+......+...+...|++++|.+.|+.+.+.+ +.+...+..+...+...|++++|...+++.....
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 455555554 3344556677777888888888888888887765 3356677778888888888888888888776542
Q ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhH
Q 043204 147 VKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESY 189 (504)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 189 (504)
+.+...+..+..++...|++++|.+.|+...+. .|+...+
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 334556666777788888888888888887775 3444443
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=1.6e-06 Score=48.22 Aligned_cols=33 Identities=45% Similarity=0.777 Sum_probs=24.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 043204 440 TYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPD 472 (504)
Q Consensus 440 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 472 (504)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00074 Score=54.92 Aligned_cols=191 Identities=17% Similarity=0.150 Sum_probs=111.6
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChH
Q 043204 200 RRLNEATHLLYSMFWRISQKGSGEDIV-IYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIE 278 (504)
Q Consensus 200 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (504)
.+.++..+++.++..........++.. .|..++-+....|+.+.|...++++...- |.+.....+-...+...|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 344555555555543322222444433 34445555566667777777777766542 444444444444555556666
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 043204 279 GAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEM 358 (504)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (504)
+|.++++.+++.++. |..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 666666666655432 5555555555555557777777777777665 44488888888888888888888888888755
Q ss_pred hcCCCCccHHHHHHHHHHHHh---cCChHHHHHHHHHHHHh
Q 043204 359 VKGTFVPTVRVYNILLKGLCD---AGNSAVAVMYLKKMSKQ 396 (504)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 396 (504)
... +-+...+..+...+.- ..+.+.+.++|.+..+.
T Consensus 182 l~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 543 2233344444444333 33455677777776654
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=1.8e-06 Score=47.95 Aligned_cols=33 Identities=42% Similarity=0.664 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCC
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPD 185 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 185 (504)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 578888888888888888888888888888776
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=3.6e-05 Score=69.07 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=98.9
Q ss_pred hcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 043204 46 PVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEM 125 (504)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (504)
..-..|+..+...++++.|.++|+++.+.. |+ ....+++.+...++..+|.+++++..+.. +.+...+..-.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344566677777888999999999988775 44 44457778888888888999988887654 34466666777778
Q ss_pred HhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC
Q 043204 126 VKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ 180 (504)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (504)
.+.++.+.|+.+.+++... .+.+..+|..|..+|...|+++.|+-.++.+.-.
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8889999999999988754 2335668999999999999999999999888753
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.25 E-value=1.9e-06 Score=47.47 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCC
Q 043204 152 QSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYP 184 (504)
Q Consensus 152 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 184 (504)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777777777665
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.24 E-value=2.5e-06 Score=46.94 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=19.8
Q ss_pred chHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 043204 439 ETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLP 471 (504)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 471 (504)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666655554
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00056 Score=55.60 Aligned_cols=188 Identities=11% Similarity=0.017 Sum_probs=114.4
Q ss_pred hcCChhHHHHHHHHHHhcCC-C-CCcchh-cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCh
Q 043204 20 KQKSPLTALKIFKEAKEKYP-N-YRHNGP-VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQL 96 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~~p-~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (504)
...++++.++++..+....+ + ..++.. .|..++-+....|+.+.|..+++.+...- +.+..+-..-...+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 34567777777777765433 2 344443 34555555666777777888777776553 22333322222334456777
Q ss_pred hHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 043204 97 NEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQE 176 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 176 (504)
++|+++|+.+.+.+ +.+..++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 88888888777766 444555655555555666666777766666554 345677777788888888888888888887
Q ss_pred hhhCCCCCCHhhHHHHHHHHH---hcCCHHHHHHHHHHH
Q 043204 177 MDFQGCYPDRESYHILMKGLC---NDRRLNEATHLLYSM 212 (504)
Q Consensus 177 ~~~~~~~p~~~~~~~l~~~~~---~~~~~~~a~~~~~~~ 212 (504)
+.-.. +.++..+..+...+. ...+.+.+.++|.+.
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 77653 223444444444433 334566677777766
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=0.00018 Score=55.76 Aligned_cols=125 Identities=12% Similarity=0.077 Sum_probs=75.0
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccH---HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccH--HHHHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKD---SVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWT--QSFNTL 121 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 121 (504)
.|..++..+ ..++...+...++.+.+.. +.+. .....+...+...|++++|...|+.+......+.. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 345555444 3677777777777777654 3331 22344556677778888888888887776532321 233445
Q ss_pred HHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 043204 122 LKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQE 176 (504)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 176 (504)
...+...|++++|+..++..... ......+......|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56666677777777777553221 22333455566667777777777776654
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=0.00014 Score=65.32 Aligned_cols=126 Identities=17% Similarity=0.107 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Q 043204 296 LASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLK 375 (504)
Q Consensus 296 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 375 (504)
......++..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++++.+... +-+......-..
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAE 242 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3444555666666689999999999999874 33 44567888888888899999999877554 345666666677
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHhhcCcHHHHHHHHHHHH
Q 043204 376 GLCDAGNSAVAVMYLKKMSKQVGCVAN-GETYGILVDGLCRDGRFLEASRVLEEML 430 (504)
Q Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 430 (504)
.+.+.++++.|+++.+++.+. .|+ ..+|..|..+|.+.|+++.|+..++.+.
T Consensus 243 fLl~k~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 788999999999999998853 565 4589999999999999999998888764
No 145
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.14 E-value=0.005 Score=57.71 Aligned_cols=124 Identities=7% Similarity=0.003 Sum_probs=60.7
Q ss_pred cchhcHHHHHHHHhccCChhHHHHHHHHhhc-CCCCc--------cHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCc
Q 043204 43 HNGPVYASMIGILSESNRITEMKEVIDQMKG-DSCEC--------KDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVN 113 (504)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 113 (504)
|-+..|..+.......-.++.|...|=+... .|++. +...-.+=+. +--|.+++|+++|-++-.++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh---
Confidence 3555666666555555555555555544332 12111 0001111111 22366777777776665443
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHh
Q 043204 114 WTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEM 177 (504)
Q Consensus 114 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (504)
..|..+.+.|++-...++++.-..+.+...-...|+.+...++....+++|.++|..-
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344555666666666665543222111122345666666666666666666666544
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.13 E-value=3.1e-05 Score=55.18 Aligned_cols=93 Identities=16% Similarity=0.182 Sum_probs=57.4
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 043204 12 TYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYA 91 (504)
Q Consensus 12 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
..+...+...|++++|+..|+++.+..|. +...+..+...+...+++++|.+.++...... +.+..++..+...+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 34555666667777777777776665443 33555566666666667777777776666554 344455666666666
Q ss_pred hcCChhHHHHHHHHhhh
Q 043204 92 RAGQLNEAVSLFKNLSQ 108 (504)
Q Consensus 92 ~~~~~~~a~~~~~~~~~ 108 (504)
..|+++.|...+....+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666665544
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.13 E-value=5.6e-05 Score=56.44 Aligned_cols=101 Identities=8% Similarity=0.009 Sum_probs=75.3
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCC--ccHHHHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCE--CKDSVFATAI 87 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 87 (504)
++-.+...+.+.|++++|...|+.+.+..|+.......+..+..++.+.|+++.|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34556677788888899999998888877653333456667888888888888888888888765311 1245677777
Q ss_pred HHHHhcCChhHHHHHHHHhhhCC
Q 043204 88 RTYARAGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~~ 110 (504)
.++.+.|+.+.|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 88888888888888888887765
No 148
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.11 E-value=0.0071 Score=55.03 Aligned_cols=151 Identities=14% Similarity=0.053 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHH
Q 043204 347 VDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAG---NSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEAS 423 (504)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 423 (504)
-+++..+++..+... ..-+..+|..+...--..- ..+....+++++.......|+ .+|..+++.-.+..-++.|.
T Consensus 309 t~e~~~~yEr~I~~l-~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 309 TDEAASIYERAIEGL-LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHH
Confidence 355666666533221 1223344444433211111 356677788888776445554 46788888888999999999
Q ss_pred HHHHHHHhcCcCC-CcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCchhHHHHHHHHhh
Q 043204 424 RVLEEMLIRSYWP-CVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVW-SSLVASVCCNTADLNVCRKTLEQLS 501 (504)
Q Consensus 424 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~~a~~~~~~~~ 501 (504)
.+|.++.+.+..+ ++.++++++.-|+ .++.+-|.++|+--++. -+|.+.| ...+.-+..- ++-+.+..+|++++
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~l-Ndd~N~R~LFEr~l 462 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHL-NDDNNARALFERVL 462 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHh-CcchhHHHHHHHHH
Confidence 9999999987766 6667777776655 58889999999987653 2444333 3444433333 33777888888877
Q ss_pred cC
Q 043204 502 SC 503 (504)
Q Consensus 502 ~~ 503 (504)
.+
T Consensus 463 ~s 464 (656)
T KOG1914|consen 463 TS 464 (656)
T ss_pred hc
Confidence 65
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.09 E-value=7.6e-06 Score=56.42 Aligned_cols=82 Identities=15% Similarity=0.190 Sum_probs=54.2
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHH
Q 043204 21 QKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAV 100 (504)
Q Consensus 21 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (504)
+|+++.|+.+|+++.+..|. .++...+..+..++.+.|++++|..+++. .+.+ +.+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 57788888888888887553 22344555577888888888888888877 3333 233344445577778888888888
Q ss_pred HHHHH
Q 043204 101 SLFKN 105 (504)
Q Consensus 101 ~~~~~ 105 (504)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87764
No 150
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.07 E-value=0.00077 Score=57.01 Aligned_cols=180 Identities=7% Similarity=-0.031 Sum_probs=90.5
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCccHHH---HHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 043204 50 SMIGILSESNRITEMKEVIDQMKGDSCECKDSV---FATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMV 126 (504)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (504)
.....+...|++++|.+.|+.+.... |-+... .-.++.++.+.++++.|...|++..+..+......+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34445556677777777777776654 222222 23445666677777777777777665543332233333333332
Q ss_pred h--cc---------------h---HHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCH
Q 043204 127 K--ES---------------K---LEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDR 186 (504)
Q Consensus 127 ~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 186 (504)
. .+ + ...|...|+++. .-|=.+.-..+|...+..+... .-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~---la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDR---LAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHH---HHH
Confidence 1 10 1 122333333333 3333333344444433333321 011
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 043204 187 ESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKIL 252 (504)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 252 (504)
.-+ .+.+.|.+.|.+..|..-++.+..... +.+........++.+|...|..++|.++...+.
T Consensus 177 ~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp--~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YEL-SVAEYYTKRGAYVAVVNRVEQMLRDYP--DTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH-HHHHHHHHcCchHHHHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 111 345556666777777777666654322 233345566666677777777777766665544
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.04 E-value=0.00016 Score=62.85 Aligned_cols=132 Identities=11% Similarity=0.130 Sum_probs=76.3
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHh-cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYAR-AGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEM 125 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (504)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|.++|+...+. ...+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45666666666666777777777766443 3334444444333222 45555577777766553 233455566666666
Q ss_pred HhcchHHHHHHHHHHhhcCCCCcc-hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC
Q 043204 126 VKESKLEAAHILFLRSCYGWEVKS-RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ 180 (504)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (504)
...++.+.|..+|++......... ....|...+..=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667777777777777665432222 2346777777777777777777777777664
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.04 E-value=9.3e-05 Score=66.78 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=84.0
Q ss_pred CcchhhhhhccccCCCCChHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHH
Q 043204 259 PKSRRHRIDLCPCNDGEDIEGAKSLINEALIR--GGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEA 336 (504)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (504)
-+.....+.+..+....+++.+..++...... ....-..|..+++..|...|..+.++.++..=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444555567777777788888887777655 2222345556788888888888888888888788888888888888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc
Q 043204 337 KLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDA 380 (504)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (504)
|++.+.+.|++..|.++...+|.+. ...+..|+...+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHh
Confidence 8888888888888888888755444 344555655555555554
No 153
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.99 E-value=0.018 Score=55.78 Aligned_cols=201 Identities=10% Similarity=0.035 Sum_probs=131.2
Q ss_pred CCCCCCchHHHHH--HHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHH
Q 043204 5 WPRLLTPTYLSQI--IKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSV 82 (504)
Q Consensus 5 ~p~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (504)
+|+... ...+.+ +.+.|+.++|..+++......+. |..|...+-.+|.+.++.++|..+|++..... |+...
T Consensus 39 ~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~---D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eel 112 (932)
T KOG2053|consen 39 HPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLKGT---DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEEL 112 (932)
T ss_pred CCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCCCC---chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHH
Confidence 344433 333444 44799999999999888766444 88899999999999999999999999999875 66888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc----------hHHHHHHHHHHhhcCCCCcchHH
Q 043204 83 FATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES----------KLEAAHILFLRSCYGWEVKSRIQ 152 (504)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~ 152 (504)
...+..+|.+-+++.+-.++--++.+ +.+-.++.+=++++.+.... -..-|.+.++.+.+..|.--+..
T Consensus 113 l~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~a 191 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEA 191 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHH
Confidence 88888899988877654433333333 22222333334444444321 13456777777777654222222
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHH-HhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQ-EMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
-...-...+...|++++|.+++. ...+.-..-+...-+.-+..+...++|.+..++-.++
T Consensus 192 E~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 192 EIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 22222334566789999999994 4444323334444455667777888898888887777
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.98 E-value=0.00012 Score=55.44 Aligned_cols=104 Identities=8% Similarity=-0.098 Sum_probs=78.4
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
+......+...+...|++++|..+|+.+...+ +-+..-|..|..++-..|++++|+..|......+ +.++..+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33444566667778888888888888888776 5666667888888888888888888888887776 355677778888
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCcc
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVKS 149 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (504)
++...|+.+.|.+.|+.....-+..|
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 88888888888888887765433333
No 155
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.97 E-value=0.00021 Score=64.57 Aligned_cols=125 Identities=10% Similarity=0.102 Sum_probs=95.3
Q ss_pred CCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCc-chHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhh
Q 043204 110 NCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVK-SRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRES 188 (504)
Q Consensus 110 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 188 (504)
+.+.+......+++.+....+++.+..++.+....+... .-..|..++++.|.+.|..+.++.+++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 334455666777888888888888888888776543211 1123456899999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 043204 189 YHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQ 238 (504)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (504)
++.||..+.+.|++..|.++...| ...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~----~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEM----MLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHH----HHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999888 4444445666666666555554
No 156
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.011 Score=52.08 Aligned_cols=87 Identities=17% Similarity=0.037 Sum_probs=54.8
Q ss_pred CCCCChHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhh---HHHHHHHHhcCC
Q 043204 272 NDGEDIEGAKSLINEALIR---GGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVM---YEAKLAALFKDG 345 (504)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~ 345 (504)
.+.|.+..|.+.+.+.+.. +..++...|........+.|+..+|+.--+..... |... +..-..++.-.+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555533 23455666666666777778888888888777764 3322 222234555678
Q ss_pred CHHHHHHHHHHHHhcCC
Q 043204 346 MVDEALEVIEEEMVKGT 362 (504)
Q Consensus 346 ~~~~a~~~~~~~~~~~~ 362 (504)
++++|.+-|+++|+...
T Consensus 336 ~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 88888888888776543
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.97 E-value=0.00016 Score=65.32 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=80.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 043204 14 LSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARA 93 (504)
Q Consensus 14 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
....+...|++++|+..|+++++..|+ +...|..+..++...|++++|+..++++.+.. +.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 345666789999999999999999887 78888888899999999999999999998887 66777888888999999
Q ss_pred CChhHHHHHHHHhhhCC
Q 043204 94 GQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 94 ~~~~~a~~~~~~~~~~~ 110 (504)
|+++.|+..|+...+.+
T Consensus 84 g~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 84 EEYQTAKAALEKGASLA 100 (356)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999988765
No 158
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.96 E-value=1.4e-05 Score=42.82 Aligned_cols=29 Identities=41% Similarity=0.690 Sum_probs=15.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 043204 440 TYNVLIRGLCSIGKQYEAVMWLEEMISQA 468 (504)
Q Consensus 440 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 468 (504)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 159
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.96 E-value=3.7e-05 Score=50.50 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=49.7
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHH
Q 043204 19 KKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFAT 85 (504)
Q Consensus 19 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (504)
...|++++|++.|+.+.+.+|+ +...+..+..+|.+.|++++|.++++.+.... |+...|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHH
Confidence 4678899999999999998887 88888889999999999999999999988875 44333433
No 160
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.95 E-value=0.012 Score=52.28 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHH-HHHHHH
Q 043204 298 SYSAMAIDLYNEGRIVEGDKVLDEMRTKG-FWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRV-YNILLK 375 (504)
Q Consensus 298 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~ 375 (504)
.|...++...+...++.|..+|-++.+.| +.+++..+++++..++ .|+..-|..+|+-.|... ||... -.-.+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHH
Confidence 34444555555555556666666665555 3445555555555443 345555555555444443 22222 222333
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 376 GLCDAGNSAVAVMYLKKMSKQVGCVAN--GETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
.+...++-+.|..+|+....+ +..+ ...|..+|+--..-|+...+..+=++|.+
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 444555555566666544332 1222 33555555555555555555555444444
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.90 E-value=0.0065 Score=53.17 Aligned_cols=208 Identities=14% Similarity=0.126 Sum_probs=113.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCC----C-ccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q 043204 86 AIRTYARAGQLNEAVSLFKNLSQFNC----V-NWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDV 160 (504)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (504)
....|...|++++|.+.|....+... . .-...|......|.+. ++++|...+ ...+..
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~----------------~~A~~~ 103 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY----------------EKAIEI 103 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH----------------HHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH----------------HHHHHH
Confidence 35667777788888777776532111 1 0111222222222222 444444443 444566
Q ss_pred HhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhc
Q 043204 161 LCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCND-RRLNEATHLLYSMFWRISQKGSGED-IVIYRTLLFALCDQ 238 (504)
Q Consensus 161 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 238 (504)
|...|++..|-+++..+- ..|... |++++|.+.|++..+.....+.... ..++..+...+.+.
T Consensus 104 y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 104 YREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred HHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 777787777766665544 345566 7899999999888666556552222 34567788889999
Q ss_pred CchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHH
Q 043204 239 GKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSL-ASYSAMAIDLYNEGRIVEGDK 317 (504)
Q Consensus 239 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~ 317 (504)
|++++|.++|+++.......+... .+. ..+-..+-++...|+...|..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~-------------------------------~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLK-------------------------------YSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTG-------------------------------HHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccc-------------------------------hhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999887543211100 011 122223335555688888888
Q ss_pred HHHHHHHCC--CCc--chhhHHHHHHHHhc--CCCHHHHHHHHHH
Q 043204 318 VLDEMRTKG--FWP--SLVMYEAKLAALFK--DGMVDEALEVIEE 356 (504)
Q Consensus 318 ~~~~~~~~~--~~~--~~~~~~~l~~~~~~--~~~~~~a~~~~~~ 356 (504)
.+++..... +.. .......|+.+|-. ...++.++.-|+.
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 888877543 211 12344455655543 2345555555544
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.89 E-value=3.8e-05 Score=52.94 Aligned_cols=82 Identities=26% Similarity=0.257 Sum_probs=39.0
Q ss_pred cCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHH
Q 043204 380 AGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVM 459 (504)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 459 (504)
.|+++.|+.+++++.+.....++...+-.+..+|.+.|++++|..+++. .+.+ ..+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3555666666666655411111333334455666666666666666655 2211 1122233334555566666666666
Q ss_pred HHHH
Q 043204 460 WLEE 463 (504)
Q Consensus 460 ~~~~ 463 (504)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.89 E-value=1.9e-05 Score=42.19 Aligned_cols=29 Identities=45% Similarity=0.771 Sum_probs=20.6
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q 043204 405 TYGILVDGLCRDGRFLEASRVLEEMLIRS 433 (504)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 433 (504)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.88 E-value=0.00046 Score=48.46 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=63.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhCCC-CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHhhCCCCcCH
Q 043204 155 NLLMDVLCQCRRSDLALHVFQEMDFQGC-YPDRESYHILMKGLCNDR--------RLNEATHLLYSMFWRISQKGSGEDI 225 (504)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (504)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.| ...+++|+.
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDi----L~~~lKP~~ 104 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDI----LSNKLKPND 104 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHH----HHhccCCcH
Confidence 4455666667999999999999999999 899999999998876543 345567778887 788899999
Q ss_pred HHHHHHHHHHHh
Q 043204 226 VIYRTLLFALCD 237 (504)
Q Consensus 226 ~~~~~l~~~~~~ 237 (504)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.86 E-value=4.6e-05 Score=49.46 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=42.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCC
Q 043204 14 LSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDS 75 (504)
Q Consensus 14 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (504)
+...+...|++++|+..|+++.+..|+ +...+..+..++...|++++|..+|+++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 345667777777777777777777666 77777777777777777777777777776553
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.00031 Score=61.10 Aligned_cols=129 Identities=11% Similarity=0.036 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHH-HhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 043204 298 SYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAA-LFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKG 376 (504)
Q Consensus 298 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (504)
+|..++...-+.+..+.|..+|.+.++.+. .+...|...... |...++.+.|..+|+..++.. ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 344444444444445555555555543211 122222222222 111333444555555444332 2333344444444
Q ss_pred HHhcCChHHHHHHHHHHHHhcCCCCch---hhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 377 LCDAGNSAVAVMYLKKMSKQVGCVANG---ETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
+...++.+.|..+|++.... +.++. ..|...+..-.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555554432 11111 2444444444444555555554444444
No 167
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.85 E-value=0.0075 Score=46.76 Aligned_cols=134 Identities=14% Similarity=0.012 Sum_probs=81.4
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHH
Q 043204 77 ECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNL 156 (504)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (504)
-|...--..|..+..+.|+..+|...|++....-...|......+.++....+++..|...++++.+-++..-+..+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 35555555666777777777777777777766555566666666677777777777777777776654322222223345
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 157 LMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
+.+.+...|.++.|+..|+..... .|+...-..-...+.+.|+.+++..-+..+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 566777777777777777777765 333332222223345566666655555544
No 168
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.85 E-value=0.00095 Score=49.70 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCC----cchHHH
Q 043204 369 VYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVA-NGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPC----VETYNV 443 (504)
Q Consensus 369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 443 (504)
++..+...+...|++++|.+.|..+.+...-.+ ....+..+..++.+.|++++|...++.+.... |+ ...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHH
Confidence 344555566677777777777777765411111 12345556677777777777777777776642 22 344566
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc
Q 043204 444 LIRGLCSIGKQYEAVMWLEEMISQ 467 (504)
Q Consensus 444 l~~~~~~~g~~~~a~~~~~~~~~~ 467 (504)
+..++...|++++|.+.++++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 666777777777777777777754
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00034 Score=49.59 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=45.3
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc
Q 043204 49 ASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKE 128 (504)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (504)
..+...+...|++++|...++...+.. +.+...+..+...+...++++.|.+.|+...+.... +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 344445555566666666665555443 233344555555555555555555555555443321 123444444444555
Q ss_pred chHHHHHHHHHHh
Q 043204 129 SKLEAAHILFLRS 141 (504)
Q Consensus 129 ~~~~~a~~~~~~~ 141 (504)
|+.+.|...+...
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 5555555544443
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.83 E-value=0.002 Score=49.03 Aligned_cols=91 Identities=11% Similarity=0.021 Sum_probs=46.3
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcC
Q 043204 86 AIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCR 165 (504)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (504)
+...+...|++++|.++|+.+...++. +..-|-.|...+...|++++|+..|.....-.. -|...+-.+..++...|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHcC
Confidence 334444555666666666555554422 233444555555555666666666555543321 22334444555555556
Q ss_pred CHHHHHHHHHHhhh
Q 043204 166 RSDLALHVFQEMDF 179 (504)
Q Consensus 166 ~~~~a~~~~~~~~~ 179 (504)
+.+.|.+.|+....
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666655555443
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.83 E-value=0.0012 Score=57.70 Aligned_cols=163 Identities=13% Similarity=0.145 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhh----CCCC-ccHHHHHHHHHHHHhc-chHHHHHHHHHHhhcCC---C-CcchHH
Q 043204 83 FATAIRTYARAGQLNEAVSLFKNLSQ----FNCV-NWTQSFNTLLKEMVKE-SKLEAAHILFLRSCYGW---E-VKSRIQ 152 (504)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~---~-~~~~~~ 152 (504)
|......|.+. +++.|.+.++...+ .|-. .-...+..+...|-.. |+++.|++.|++...-. + ...-..
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~ 156 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAE 156 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHH
Confidence 33333443333 55566555554432 2211 1123455566666666 78888888887765311 1 111234
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCC-----CHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC--CCCcC
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQEMDFQGCYP-----DRE-SYHILMKGLCNDRRLNEATHLLYSMFWRISQK--GSGED 224 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~ 224 (504)
++..+...+.+.|++++|.++|++....-... +.. .|-..+-++...||+..|...+++. ... +...+
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~----~~~~~~F~~s 232 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY----CSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH----GTTSTTSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HhhCCCCCCc
Confidence 56667788888999999999998887643221 121 2223344566778898998888877 332 22222
Q ss_pred --HHHHHHHHHHHHhcCc---hhHHHHHHHHH
Q 043204 225 --IVIYRTLLFALCDQGK---IQDAMQILEKI 251 (504)
Q Consensus 225 --~~~~~~l~~~~~~~g~---~~~a~~~~~~~ 251 (504)
......|+.++-. || ++.+..-|+.+
T Consensus 233 ~E~~~~~~l~~A~~~-~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 233 REYKFLEDLLEAYEE-GDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHHh-CCHHHHHHHHHHHccc
Confidence 3445556666643 33 44444444433
No 172
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.81 E-value=0.0029 Score=52.16 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=45.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCC
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDS 75 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (504)
...+...|++.+|...|+.+...+|+-.....+.-.++.++.+.|+++.|...++...+..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3456678889999999999998888755556667777888888899999999888887754
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.81 E-value=0.00071 Score=63.92 Aligned_cols=63 Identities=13% Similarity=0.005 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC
Q 043204 115 TQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ 180 (504)
Q Consensus 115 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (504)
...|..+.-.....|++++|...+++...- .|+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344444444444556666666666665533 234555666666666666666666666665544
No 174
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.80 E-value=0.00045 Score=48.52 Aligned_cols=80 Identities=10% Similarity=0.213 Sum_probs=57.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCC-CccHHHHHHHHHHHHhcC--------ChhHHHHHHHHhhhCCCCccHHHH
Q 043204 48 YASMIGILSESNRITEMKEVIDQMKGDSC-ECKDSVFATAIRTYARAG--------QLNEAVSLFKNLSQFNCVNWTQSF 118 (504)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 118 (504)
-...|..+...+++.....+|+.+.+.|+ .|+..+|+.++...++.. ..-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556666677888888888888888888 788888888888776643 233456777777777777777777
Q ss_pred HHHHHHHHh
Q 043204 119 NTLLKEMVK 127 (504)
Q Consensus 119 ~~ll~~~~~ 127 (504)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 777766543
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.80 E-value=0.00029 Score=56.23 Aligned_cols=115 Identities=10% Similarity=-0.022 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCc--cHHHHHHHHHHHHhcCChhHHHH
Q 043204 24 PLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCEC--KDSVFATAIRTYARAGQLNEAVS 101 (504)
Q Consensus 24 ~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 101 (504)
+..+...+..+.+..+. ......|..+...+...|++++|...|+........+ ...++..+..++...|++++|+.
T Consensus 15 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 15 FTIVADILLRILPTTSG-EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred cccchhhhhHhccCCch-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 44455555555433322 2245567788888888899999999999987654222 23478888899999999999999
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHH-------hcchHHHHHHHHHH
Q 043204 102 LFKNLSQFNCVNWTQSFNTLLKEMV-------KESKLEAAHILFLR 140 (504)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~ll~~~~-------~~~~~~~a~~~~~~ 140 (504)
.++...+... ....++..+...+. ..|+++.|...+++
T Consensus 94 ~~~~Al~~~~-~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 94 YYFQALERNP-FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHhCc-CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9998876542 22445566666666 77777755554443
No 176
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.029 Score=54.13 Aligned_cols=55 Identities=5% Similarity=0.102 Sum_probs=38.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 372 ILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 372 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
-++..+.+..+++.+..+.+...+. ++..|..++..+++.+.++.-.++..+..+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-----DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-----ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 3556677778888888877776543 777888888888888866665555544443
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.78 E-value=0.00074 Score=54.11 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=60.7
Q ss_pred hcHHHHHHHHhccCChhHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 46 PVYASMIGILSESNRITEMKEVIDQMKGDSCECK--DSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
..+..+...+...|++++|...|++..+....++ ...+..+...+.+.|++++|...+++..+.... +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3455555556666666666666666654331111 234555666666666666666666665554321 2334444455
Q ss_pred HHHhcch--------------HHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcC
Q 043204 124 EMVKESK--------------LEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCR 165 (504)
Q Consensus 124 ~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (504)
.+...|+ +++|.+.+++.... .|+ .+..++.-+...|
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~---~p~--~~~~~~~~~~~~~ 165 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL---APN--NYIEAQNWLKTTG 165 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh---Cch--hHHHHHHHHHhcC
Confidence 5555444 56777777777643 233 2344444444443
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.72 E-value=0.0023 Score=60.58 Aligned_cols=145 Identities=13% Similarity=-0.018 Sum_probs=97.0
Q ss_pred CCCcchhhHHHHHHHHhc--C---CCHHHHHHHHHHHHhcCCCCcc-HHHHHHHHHHHHhcC--------ChHHHHHHHH
Q 043204 326 GFWPSLVMYEAKLAALFK--D---GMVDEALEVIEEEMVKGTFVPT-VRVYNILLKGLCDAG--------NSAVAVMYLK 391 (504)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~~a~~~~~ 391 (504)
+.+.+...|...+++... . ++.+.|..+|++++... |+ ...|..+..++.... +...+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld---P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE---PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 445577888888776543 2 23778899999866654 44 334444433332211 1233334344
Q ss_pred HHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 043204 392 KMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLP 471 (504)
Q Consensus 392 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 471 (504)
..........+...|.++.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++... +.|
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 333221133345677777767777899999999999999876 7888899999999999999999999999984 467
Q ss_pred CHHHHH
Q 043204 472 DISVWS 477 (504)
Q Consensus 472 ~~~~~~ 477 (504)
..++|.
T Consensus 485 ~~pt~~ 490 (517)
T PRK10153 485 GENTLY 490 (517)
T ss_pred CCchHH
Confidence 766643
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.72 E-value=0.023 Score=48.21 Aligned_cols=180 Identities=14% Similarity=0.075 Sum_probs=98.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCccHH--HHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHh
Q 043204 85 TAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQ--SFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLC 162 (504)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (504)
.....+...|++++|.+.|+.+....+.+... ..-.+..++.+.++++.|...+++.....+..|+.. +...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HHHHHHHHh
Confidence 34444556788888888888877654333211 123456677788888888888888877655555532 222222221
Q ss_pred h--c---------------CCH---HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCC
Q 043204 163 Q--C---------------RRS---DLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSG 222 (504)
Q Consensus 163 ~--~---------------~~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 222 (504)
. . .|. ..|.+.|+++.+. -|+. .-..+|...+..+..++.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~la~~--- 177 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDRLAKY--- 177 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHHHHHH---
Confidence 1 1 122 3444555555554 3433 22333433333332111111
Q ss_pred cCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCC-CCcchhhhhhccccCCCCChHHHHHHHHHHH
Q 043204 223 EDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLK-APKSRRHRIDLCPCNDGEDIEGAKSLINEAL 288 (504)
Q Consensus 223 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 288 (504)
--.+...|.+.|.+..|..-++.+++.-.. +........+...+...|..++|......+.
T Consensus 178 -----e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 -----ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -----HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 114556677777887788878777765322 2233344455667777777777777665544
No 180
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.65 E-value=0.04 Score=49.30 Aligned_cols=446 Identities=12% Similarity=0.098 Sum_probs=197.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCC--CCcc-hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH--HH
Q 043204 17 IIKKQKSPLTALKIFKEAKEKYPN--YRHN-GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT--YA 91 (504)
Q Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~p~--~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 91 (504)
.+.++++.++|..+|.++-+.... .... ...-+.++++|... +.+.....+....+.. | ...|-.+..+ +-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 455789999999999999876321 0000 12245667777654 5666666666665543 2 2233333333 34
Q ss_pred hcCChhHHHHHHHHhhhC--CCCc-cH-----------HHHHHHHHHHHhcchHHHHHHHHHHhhcCC---CCcchHHHH
Q 043204 92 RAGQLNEAVSLFKNLSQF--NCVN-WT-----------QSFNTLLKEMVKESKLEAAHILFLRSCYGW---EVKSRIQSL 154 (504)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~--~~~~-~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 154 (504)
+.+.+.+|.+.+....+. +..+ .. ..=+..+..+...|.+.++..+++++.... ...=++.+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678899999988877654 2222 11 111334445556666666666666654321 111234455
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhh---CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 043204 155 NLLMDVLCQCRRSDLALHVFQEMDF---QGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTL 231 (504)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 231 (504)
+.++-.++++ +|-++.+ ..+-|| |.-++..|.+.=.. ++.. .-..+.|.......+
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~------~d~~----~Y~k~~peeeL~s~i 229 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHA------FDQR----PYEKFIPEEELFSTI 229 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHH------Hhhc----hHHhhCcHHHHHHHH
Confidence 5544444332 2222221 112222 22222222211000 0000 001122333333333
Q ss_pred HHHHHhc--CchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCC----ChhhHHHHHHH
Q 043204 232 LFALCDQ--GKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIP----SLASYSAMAID 305 (504)
Q Consensus 232 ~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~ 305 (504)
+....-. ....--.++++.....-+.|........+..-... +.+++..+.+.+....+.+ -..+|..++..
T Consensus 230 mqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~ 307 (549)
T PF07079_consen 230 MQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSF 307 (549)
T ss_pred HHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3322211 12223333444443343444433333332222222 4444444444443222111 23567777788
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcchhhH-------HHHHHHHhc-CCC---HHHHHHHHHHHHhcCCCCccHH-HHHHH
Q 043204 306 LYNEGRIVEGDKVLDEMRTKGFWPSLVMY-------EAKLAALFK-DGM---VDEALEVIEEEMVKGTFVPTVR-VYNIL 373 (504)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~-~~~---~~~a~~~~~~~~~~~~~~~~~~-~~~~l 373 (504)
..+.++...|.+.+.-+.-.. |+...- ..+.+..+. ..+ ...=+.+|+. ..... .|.. ....|
T Consensus 308 ~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~-~qs~D--iDrqQLvh~L 382 (549)
T PF07079_consen 308 KVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE-IQSYD--IDRQQLVHYL 382 (549)
T ss_pred HHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH-HHhhc--ccHHHHHHHH
Confidence 888888888888877666543 222111 122222221 111 1122233332 22221 1211 11122
Q ss_pred HH---HHHhcCC-hHHHHHHHHHHHHhcCCCC-chhhHHHHH----HHHhh---cCcHHHHHHHHHHHHhcCcCCCcch-
Q 043204 374 LK---GLCDAGN-SAVAVMYLKKMSKQVGCVA-NGETYGILV----DGLCR---DGRFLEASRVLEEMLIRSYWPCVET- 440 (504)
Q Consensus 374 ~~---~~~~~~~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~- 440 (504)
+. -+-+.|. -++|+.+++.+.+- .| |...-|.+. .+|.. ...+.+-.++-+-+.+.|++|-...
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~f---t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e 459 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQF---TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISE 459 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccH
Confidence 22 2233343 66677777776643 22 222222111 12211 1233333344334444565553322
Q ss_pred ---HHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHHHHh
Q 043204 441 ---YNVLIRG--LCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTLEQL 500 (504)
Q Consensus 441 ---~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 500 (504)
-|.|.++ +..+|++.++.-.-.-+. .+.|++.++..+.-++..... +++|..++..+
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~-Y~eA~~~l~~L 521 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKR-YQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhh-HHHHHHHHHhC
Confidence 2333322 335666666655544444 356666666655554444433 77777766654
No 181
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.63 E-value=0.0017 Score=58.77 Aligned_cols=92 Identities=9% Similarity=0.044 Sum_probs=70.2
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcch
Q 043204 51 MIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESK 130 (504)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 130 (504)
....+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..++...+.+. .+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence 3455667788888888888888776 56667788888888888888888888888877653 345667777778888888
Q ss_pred HHHHHHHHHHhhcC
Q 043204 131 LEAAHILFLRSCYG 144 (504)
Q Consensus 131 ~~~a~~~~~~~~~~ 144 (504)
+++|...|++....
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877654
No 182
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=0.062 Score=50.82 Aligned_cols=217 Identities=10% Similarity=0.029 Sum_probs=128.3
Q ss_pred ChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCccHHHHHHHHH-------HHHhcchH
Q 043204 60 RITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQF-NCVNWTQSFNTLLK-------EMVKESKL 131 (504)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~-------~~~~~~~~ 131 (504)
..++|.+..+ . .|.+..|..+.......-.++.|+..|-+.... |++. +.-...+.+ .-+--|++
T Consensus 678 gledA~qfiE----d--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~-vkrl~~i~s~~~q~aei~~~~g~f 750 (1189)
T KOG2041|consen 678 GLEDAIQFIE----D--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL-VKRLRTIHSKEQQRAEISAFYGEF 750 (1189)
T ss_pred chHHHHHHHh----c--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-HHHhhhhhhHHHHhHhHhhhhcch
Confidence 4556665543 2 588889998888877777888888888776542 2221 111111111 11224899
Q ss_pred HHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043204 132 EAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ-GCYPDRESYHILMKGLCNDRRLNEATHLLY 210 (504)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 210 (504)
++|+++|-++..+ ...+..+.+.||+-...++++.--.. .-.--...|+.+...++....|++|.+.|.
T Consensus 751 eeaek~yld~drr----------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 751 EEAEKLYLDADRR----------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hHhhhhhhccchh----------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999877544 34567778889998888877653211 001112567788888888888888888876
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHc
Q 043204 211 SMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIR 290 (504)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 290 (504)
.- + + ....+.++.+..++++-..+-+.+ |.+......+...+.+.|.-++|.+.+-+.-.
T Consensus 821 ~~-------~---~---~e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~- 880 (1189)
T KOG2041|consen 821 YC-------G---D---TENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL- 880 (1189)
T ss_pred hc-------c---c---hHhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccC-
Confidence 44 1 1 123556666666665554444432 34444555556666666666666655433211
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 043204 291 GGIPSLASYSAMAIDLYNEGRIVEGDKVLDE 321 (504)
Q Consensus 291 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (504)
| ...+..|...+++.+|.++-+.
T Consensus 881 ---p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 881 ---P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred ---c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1234455566666666655543
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.63 E-value=0.0025 Score=50.91 Aligned_cols=95 Identities=7% Similarity=-0.160 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcc-hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043204 117 SFNTLLKEMVKESKLEAAHILFLRSCYGWEVKS-RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKG 195 (504)
Q Consensus 117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 195 (504)
.+..+...+...|++++|...|++.....+.++ ...++..+...+...|++++|...++...... +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 344444444455555555555555542211111 12345555566666666666666666655432 1122334444444
Q ss_pred HH-------hcCCHHHHHHHHHHH
Q 043204 196 LC-------NDRRLNEATHLLYSM 212 (504)
Q Consensus 196 ~~-------~~~~~~~a~~~~~~~ 212 (504)
+. ..|+++.|...+++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 44 566666555555443
No 184
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.0089 Score=47.87 Aligned_cols=90 Identities=7% Similarity=-0.113 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHH
Q 043204 151 IQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPD--RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIY 228 (504)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 228 (504)
...+..+...+...|++++|...|++..+.+..++ ...+..+...+.+.|++++|...+++. ..... .+...+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----l~~~p-~~~~~~ 109 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA----LELNP-KQPSAL 109 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCc-ccHHHH
Confidence 34456666667777777777777777765432221 345666677777777777777777766 33221 134555
Q ss_pred HHHHHHHHhcCchhHHH
Q 043204 229 RTLLFALCDQGKIQDAM 245 (504)
Q Consensus 229 ~~l~~~~~~~g~~~~a~ 245 (504)
..+..++...|+...+.
T Consensus 110 ~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHHcCChHhHh
Confidence 55666666666544443
No 185
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0031 Score=53.22 Aligned_cols=111 Identities=5% Similarity=0.002 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC---ChhHHHHHH
Q 043204 27 ALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAG---QLNEAVSLF 103 (504)
Q Consensus 27 A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~ 103 (504)
...-++.-++.+|+ |...|-.|..+|...|+...|...|.+..+.. ++++..+..+..++..+. +..++..+|
T Consensus 141 l~a~Le~~L~~nP~---d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 141 LIARLETHLQQNPG---DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHhCCC---CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 33334444444454 55555555555555555555555555555444 344444444444333221 233444444
Q ss_pred HHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhh
Q 043204 104 KNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSC 142 (504)
Q Consensus 104 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (504)
+++...+ +.+..+..-|...+...|++.+|...++.|.
T Consensus 217 ~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 217 RQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444433 1223333333333334444444444444433
No 186
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.57 E-value=0.0016 Score=52.12 Aligned_cols=89 Identities=20% Similarity=0.150 Sum_probs=66.1
Q ss_pred CccHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcC----------------cHHHH
Q 043204 364 VPTVRVYNILLKGLCDA-----GNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDG----------------RFLEA 422 (504)
Q Consensus 364 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----------------~~~~A 422 (504)
..+-.+|..+++.+.+. |..+-....+..|.+- |+..|..+|+.|++.+=+.. +-+-|
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~ef-gv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEF-GVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHc-CCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 56788888888888754 6666677777888776 99999999999998875421 24557
Q ss_pred HHHHHHHHhcCcCCCcchHHHHHHHHHccCC
Q 043204 423 SRVLEEMLIRSYWPCVETYNVLIRGLCSIGK 453 (504)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 453 (504)
.+++++|...|+-||..++..++..+++.+.
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 7777777777777777777777777755443
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.0012 Score=55.38 Aligned_cols=99 Identities=19% Similarity=0.145 Sum_probs=71.1
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHhhcCc
Q 043204 340 ALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVAN-GETYGILVDGLCRDGR 418 (504)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 418 (504)
-+.+.+++++|+..|.+++.-. +.|.+.|..-..+|.+.|.++.|++-.+.... +.|. ..+|..|..+|...|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCc
Confidence 3567788888888888766643 45666777777788888888888877777664 3443 3577888888888888
Q ss_pred HHHHHHHHHHHHhcCcCCCcchHHHHH
Q 043204 419 FLEASRVLEEMLIRSYWPCVETYNVLI 445 (504)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~l~ 445 (504)
+++|.+.|++.++. .|+-.+|..=+
T Consensus 165 ~~~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhcc--CCCcHHHHHHH
Confidence 88888888877764 47766665443
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.53 E-value=0.0016 Score=55.49 Aligned_cols=96 Identities=7% Similarity=0.054 Sum_probs=60.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCC--CccHHHHHHHHHHHHh
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSC--ECKDSVFATAIRTYAR 92 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 92 (504)
...+.+.|++++|+..|+.+.+.+|+-.....++..+..+|...|++++|...|+.+.+... +.....+..+..++..
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~ 229 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD 229 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH
Confidence 33344567777777777777777765332234566666777777777777777777765431 1123344455566667
Q ss_pred cCChhHHHHHHHHhhhCC
Q 043204 93 AGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~ 110 (504)
.|+.+.|..+|+.+.+..
T Consensus 230 ~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 230 KGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 777777777777766553
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.0014 Score=54.91 Aligned_cols=102 Identities=11% Similarity=0.142 Sum_probs=72.8
Q ss_pred HHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHH
Q 043204 53 GILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLE 132 (504)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 132 (504)
+-+.+.+++.+|+..|.+.++.. +-|...|..-..+|.+.|.++.|++-.+..+..+. ....+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHH
Confidence 44556778888888888888776 66667777778888888888888887777776663 33567888888888888888
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHH
Q 043204 133 AAHILFLRSCYGWEVKSRIQSLNLLMD 159 (504)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~~l~~ 159 (504)
+|++.|++..+ +.|+-.+|-.=+.
T Consensus 167 ~A~~aykKaLe---ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE---LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc---cCCCcHHHHHHHH
Confidence 88888877764 3444444444333
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.51 E-value=0.00032 Score=45.97 Aligned_cols=64 Identities=28% Similarity=0.307 Sum_probs=40.6
Q ss_pred hhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043204 414 CRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLV 480 (504)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 480 (504)
.+.|++++|.++|+++.+.. +-+...+..+..+|.+.|++++|.++++++... .|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 35677777777777776653 235555666777777777777777777777743 46655555544
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.011 Score=48.74 Aligned_cols=129 Identities=12% Similarity=-0.010 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCC----CcchHHHHHHHH
Q 043204 83 FATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWE----VKSRIQSLNLLM 158 (504)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~ 158 (504)
.+.+++.+.-.|.+.-...++++.++.+.+.++.....|.+.-.+.|+.+.|...|++..+..+ ..-+..+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4445555555555555555566555555555555555555555555666666666654432211 111111122222
Q ss_pred HHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 159 DVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
..|.-.+++..|...|+++...+.. |+...|.=.-+..-.|+..+|.+.++.|
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666554321 3333333333334455666666666666
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0027 Score=53.58 Aligned_cols=103 Identities=11% Similarity=0.026 Sum_probs=88.6
Q ss_pred CCCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhcc---CChhHHHHHHHHhhcCCCCccHHH
Q 043204 6 PRLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSES---NRITEMKEVIDQMKGDSCECKDSV 82 (504)
Q Consensus 6 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~ 82 (504)
-|...|-.|..+|...|+.+.|...|.+..+..|+ |...+..+..++..+ ....++..+|+++.+.+ +-|..+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~---n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD---NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 46778999999999999999999999999999776 777777777666544 34568999999999988 778888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 043204 83 FATAIRTYARAGQLNEAVSLFKNLSQFNCV 112 (504)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 112 (504)
...|...+...|++.+|...|+.|.+....
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 888999999999999999999999987644
No 193
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.12 Score=49.40 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=77.2
Q ss_pred cchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHH
Q 043204 329 PSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGI 408 (504)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 408 (504)
....+.+--+.-+...|+-.+|.++-.+ .+ -||-..|-.=+.+++..+++++-+++-+.. ..+.-|..
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~-Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk-------ksPIGy~P 749 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSD-FK----IPDKRLWWLKLTALADIKKWEELEKFAKSK-------KSPIGYLP 749 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHh-cC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc-------CCCCCchh
Confidence 3445556666667777888888776554 32 467777777777888888887766544432 23566777
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHH
Q 043204 409 LVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEE 463 (504)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 463 (504)
.+.+|.+.|+.++|.+++-+.... + -.+.+|.+.|++.+|.+.--+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~l---~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGGL---Q------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCCh---H------HHHHHHHHhccHHHHHHHHHH
Confidence 888888888888888888776542 1 345677777777777765433
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.42 E-value=0.0002 Score=47.13 Aligned_cols=60 Identities=23% Similarity=0.142 Sum_probs=32.8
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccC-ChhHHHHHHHHhhc
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESN-RITEMKEVIDQMKG 73 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 73 (504)
|..+...+...|++++|+..|+++.+.+|. +...|..+..++...| ++++|.+.+++..+
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPN---NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 444555555555555555555555555544 4555555555555555 45555555555443
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.42 E-value=0.00075 Score=43.69 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=39.5
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 043204 51 MIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQF 109 (504)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 109 (504)
+...+.+.|++++|.+.|+.+.+.. +-+...+..+..++...|++++|...|+.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456667777777777777777766 556666777777777777777777777776554
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.41 E-value=0.0048 Score=45.26 Aligned_cols=88 Identities=9% Similarity=0.064 Sum_probs=43.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcc--hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCc---cHHHHHHHHHHH
Q 043204 16 QIIKKQKSPLTALKIFKEAKEKYPNYRHN--GPVYASMIGILSESNRITEMKEVIDQMKGDSCEC---KDSVFATAIRTY 90 (504)
Q Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 90 (504)
.++-..|+.++|+.+|++.... |.... ...+-.+.+.+...|++++|..+|+...... +. +......+..++
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~--gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAA--GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 4445566666666666666654 22211 2234445555556666666666666555432 11 112222223344
Q ss_pred HhcCChhHHHHHHHHh
Q 043204 91 ARAGQLNEAVSLFKNL 106 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~ 106 (504)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 4556666665555443
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.41 E-value=0.0014 Score=52.44 Aligned_cols=103 Identities=19% Similarity=0.219 Sum_probs=68.0
Q ss_pred CChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHH
Q 043204 294 PSLASYSAMAIDLYNE-----GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVR 368 (504)
Q Consensus 294 ~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 368 (504)
.+..+|..++..+.+. |..+-....+..|.+.|+.-|..+|+.|++.+-+ |.+- -..+|+.+..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 4778888888888765 7788888889999999999999999999988765 3221 1112221000
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcC
Q 043204 369 VYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDG 417 (504)
Q Consensus 369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 417 (504)
-.-.+-+-|++++++|... |+-||..++..+++.+.+.+
T Consensus 114 ---------hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 ---------HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ---------cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhcccc
Confidence 0112234466667777665 77777777777776665544
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.40 E-value=0.00051 Score=45.15 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=41.4
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC-ChhHHHHHHHHhhh
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAG-QLNEAVSLFKNLSQ 108 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 108 (504)
++.+|..+...+...|++++|+..|++..+.+ +.+...|..+..++...| ++++|++.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34556666666666777777777776666665 455566666666666666 56666666666554
No 199
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.39 E-value=0.058 Score=44.75 Aligned_cols=176 Identities=10% Similarity=-0.025 Sum_probs=100.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHh---
Q 043204 16 QIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYAR--- 92 (504)
Q Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 92 (504)
..-.+.|++++|.+.|+.+..++|.-.-...+...++.++-+.++++.|+..+++..+.....+...|..-|.+++.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence 33456789999999999999888876666667777788888899999999999888876533333345555555443
Q ss_pred ----cCChhHHHHHHHHh---hhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcC
Q 043204 93 ----AGQLNEAVSLFKNL---SQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCR 165 (504)
Q Consensus 93 ----~~~~~~a~~~~~~~---~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (504)
.+|...+.+.|..+ .+.- |+ +.=...|......+.... ...=-.+.+.|.+.|
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ry--Pn-------------S~Ya~dA~~~i~~~~d~L-----A~~Em~IaryY~kr~ 181 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRY--PN-------------SRYAPDAKARIVKLNDAL-----AGHEMAIARYYLKRG 181 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHC--CC-------------CcchhhHHHHHHHHHHHH-----HHHHHHHHHHHHHhc
Confidence 22333333333333 2221 11 000111111111111000 000033556777778
Q ss_pred CHHHHHHHHHHhhhCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 166 RSDLALHVFQEMDFQGCYPDR---ESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
.+..|..-+++|.+. .+-+. ..+-.+..+|...|-.++|...-.-+
T Consensus 182 ~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 182 AYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred ChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 888887777777776 22122 33445556777777777776664443
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.38 E-value=0.012 Score=43.15 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=21.2
Q ss_pred HhccCChhHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 043204 55 LSESNRITEMKEVIDQMKGDSCECK--DSVFATAIRTYARAGQLNEAVSLFKNLS 107 (504)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (504)
+-..|+.++|+.+|++....|.... ...+..+...+...|++++|+.+|+...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444432221 1123333344444444444444444433
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.36 E-value=0.0011 Score=44.13 Aligned_cols=58 Identities=22% Similarity=0.206 Sum_probs=45.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCC
Q 043204 15 SQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDS 75 (504)
Q Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (504)
-.+|.+.+++++|+++++.+...+|+ +...|.....++.+.|++++|.+.|+...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 35677788888888888888887776 77777777788888888888888888887765
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.35 E-value=0.0042 Score=54.44 Aligned_cols=138 Identities=12% Similarity=-0.071 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCc-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhh
Q 043204 188 SYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGE-DIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRI 266 (504)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 266 (504)
.|..|-+.|.-.|+++.|....+.-+...++.|-.. ....+..+..+++-.|+++.|.+.|+.....-+...+
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~------ 270 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN------ 270 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc------
Confidence 344444445555666666665544332223333221 1234555666666667777776666654332111000
Q ss_pred hccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH----CC-CCcchhhHHHHHHHH
Q 043204 267 DLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRT----KG-FWPSLVMYEAKLAAL 341 (504)
Q Consensus 267 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~ 341 (504)
........-++..+|.-..++++|+.++.+-.. .+ ..-....+-+|..+|
T Consensus 271 -------------------------r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~ 325 (639)
T KOG1130|consen 271 -------------------------RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF 325 (639)
T ss_pred -------------------------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 011233444555666666667777766543321 10 111445667777777
Q ss_pred hcCCCHHHHHHHHHH
Q 043204 342 FKDGMVDEALEVIEE 356 (504)
Q Consensus 342 ~~~~~~~~a~~~~~~ 356 (504)
...|..++|+...+.
T Consensus 326 ~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 326 NALGEHRKALYFAEL 340 (639)
T ss_pred HhhhhHHHHHHHHHH
Confidence 777777777766554
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.34 E-value=0.094 Score=46.10 Aligned_cols=309 Identities=15% Similarity=0.073 Sum_probs=147.3
Q ss_pred ChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHh--ccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH--HHhcCChhH
Q 043204 23 SPLTALKIFKEAKEKYPNYRHNGPVYASMIGILS--ESNRITEMKEVIDQMKGDSCECKDSVFATAIRT--YARAGQLNE 98 (504)
Q Consensus 23 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~ 98 (504)
.+..+.+.|..-.+.. -|.+|-..+. -.|+-..|.++-.+..+.- ..|......++.+ -.-.|+++.
T Consensus 68 sP~t~~Ryfr~rKRdr--------gyqALStGliAagAGda~lARkmt~~~~~ll-ssDqepLIhlLeAQaal~eG~~~~ 138 (531)
T COG3898 68 SPYTARRYFRERKRDR--------GYQALSTGLIAAGAGDASLARKMTARASKLL-SSDQEPLIHLLEAQAALLEGDYED 138 (531)
T ss_pred CcHHHHHHHHHHHhhh--------HHHHHhhhhhhhccCchHHHHHHHHHHHhhh-hccchHHHHHHHHHHHHhcCchHH
Confidence 3445555555544321 2444443333 3456666666554443211 2333334344332 233577777
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q 043204 99 AVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMD 178 (504)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (504)
|.+-|+.|.... ....--+..|.-.-.+.|+.+.|..+-++.-..... -...+...+...+..|+++.|+++++.-.
T Consensus 139 Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~--l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 139 ARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ--LPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC--CchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 777777765421 111111222333334556666666666655433222 12455666667777777777777776554
Q ss_pred hC-CCCCCHh--hHHHHHHHHH---hcCCHHHHHHHHHHHHHHHhhCCCCcCHHHH-HHHHHHHHhcCchhHHHHHHHHH
Q 043204 179 FQ-GCYPDRE--SYHILMKGLC---NDRRLNEATHLLYSMFWRISQKGSGEDIVIY-RTLLFALCDQGKIQDAMQILEKI 251 (504)
Q Consensus 179 ~~-~~~p~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~ 251 (504)
.. -+.++.. .-..|+.+-. -..+...|...-.+. ..+.||..-- ..-..++.+.|+..++-.+++.+
T Consensus 216 ~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a------~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 216 AAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA------NKLAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH------hhcCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 43 2233332 1222222211 122344444433322 2234442221 22335566677777777777777
Q ss_pred HHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 043204 252 LRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIR-GGIP-SLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWP 329 (504)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (504)
-+....|.....+. ..+.|+. +..-+++.... ..+| +......+..+....|++..|..--+..... .|
T Consensus 290 WK~ePHP~ia~lY~-----~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~p 360 (531)
T COG3898 290 WKAEPHPDIALLYV-----RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--AP 360 (531)
T ss_pred HhcCCChHHHHHHH-----HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cc
Confidence 66544433222221 2233332 22222222111 1122 3444555556666667777777666655553 45
Q ss_pred chhhHHHHHHHHh-cCCCHHHHHHHHHHHH
Q 043204 330 SLVMYEAKLAALF-KDGMVDEALEVIEEEM 358 (504)
Q Consensus 330 ~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 358 (504)
....|..|.+.-. ..|+-.++...+-+..
T Consensus 361 res~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 361 RESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred hhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 6666666666543 4578788777777633
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.28 E-value=0.0036 Score=48.56 Aligned_cols=88 Identities=15% Similarity=0.266 Sum_probs=47.6
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC-CCcchh------------------cHHHHHHHHhccCChhHHHHHHHHhhcCCCCc
Q 043204 18 IKKQKSPLTALKIFKEAKEKYPN-YRHNGP------------------VYASMIGILSESNRITEMKEVIDQMKGDSCEC 78 (504)
Q Consensus 18 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 78 (504)
....++++.+...++++...+.| +-++.. +...++..+...|++++|..+++.+.... |.
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~ 94 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD-PY 94 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CC
Confidence 45678999999999999988543 111211 12233333445556666666666655555 45
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 043204 79 KDSVFATAIRTYARAGQLNEAVSLFKNL 106 (504)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (504)
+...|..+|.+|...|+...|.++|+.+
T Consensus 95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 95 DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 5555666666666666666666665554
No 205
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.27 E-value=0.12 Score=45.75 Aligned_cols=141 Identities=17% Similarity=0.188 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 043204 331 LVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILV 410 (504)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 410 (504)
..+.+..+.-+...|+...|.++-.+ .. -|+...|..-+.+++..+++++-.++-.. +-++..|..++
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~-Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv 244 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKE-FK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFV 244 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHH-cC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHH
Confidence 34556667777888998888887655 32 47888999999999999999987765432 23568899999
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCch
Q 043204 411 DGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADL 490 (504)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 490 (504)
.+|.+.|+..+|..++.++ .+..-+..|.+.|++.+|.+.--+.. |...+..+... |..+. .
T Consensus 245 ~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~-~~~~~-~ 306 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKR-CPGNN-D 306 (319)
T ss_pred HHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHH-CCCCC-h
Confidence 9999999999999998772 23567788899999999988765553 55555555553 33333 2
Q ss_pred hHHHHHHHHhh
Q 043204 491 NVCRKTLEQLS 501 (504)
Q Consensus 491 ~~a~~~~~~~~ 501 (504)
..-....+.|.
T Consensus 307 ~~~~~~i~~~~ 317 (319)
T PF04840_consen 307 QLIADKIEQML 317 (319)
T ss_pred HHHHHHHHHHH
Confidence 22324445544
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.26 E-value=0.0055 Score=53.73 Aligned_cols=135 Identities=12% Similarity=-0.040 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHH----HCCCC-cchhhHHHHHHHHhcCCCHHHHHHHHHHHH----hcCCCCccH
Q 043204 297 ASYSAMAIDLYNEGRIVEGDKVLDEMR----TKGFW-PSLVMYEAKLAALFKDGMVDEALEVIEEEM----VKGTFVPTV 367 (504)
Q Consensus 297 ~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~ 367 (504)
..|..+...|+-.|+++.|+...+.-. +.|-. .....+..+.+++.-.|+++.|.+.|+..+ +-..-....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345555566666678888776554322 22211 123456677777888888888888777522 111122334
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHh----cCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 368 RVYNILLKGLCDAGNSAVAVMYLKKMSKQ----VGCVANGETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
.+.-+|.+.|.-..++++|+.++.+-..- ....-....+-+|..+|...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566777777777788888777664321 01112344566777888888888888777665543
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.21 E-value=0.019 Score=44.53 Aligned_cols=72 Identities=25% Similarity=0.290 Sum_probs=54.0
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCCCCHHHHH
Q 043204 405 TYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMI-----SQAKLPDISVWS 477 (504)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~~~ 477 (504)
+...++..+...|++++|.++.+.+.... +.+...|..++.+|...|+..+|.++|+++. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44567777888999999999999999875 5567889999999999999999999998875 458888886644
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.16 E-value=0.077 Score=41.41 Aligned_cols=133 Identities=16% Similarity=0.120 Sum_probs=80.3
Q ss_pred cchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHH
Q 043204 329 PSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGI 408 (504)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 408 (504)
|+...--.|..+....|+..+|...|++ -....+--|......+.++....+++..|...++.+.+...-.-++.+.-.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~q-alsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQ-ALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHH-HhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555666777777777777777776 444445556666666777777777777777777776654211112334455
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHH
Q 043204 409 LVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEM 464 (504)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 464 (504)
+.+.+...|...+|..-|+...+.- |+...-......+.+.|+.+++..-+...
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 6667777777777777777777642 44444334444556666555554443333
No 209
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.14 E-value=0.0071 Score=44.85 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=38.1
Q ss_pred cCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 043204 360 KGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGL 413 (504)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 413 (504)
..+..|+..+..+++.+|+..+++..|+++++...+.++++-+..+|..|+.-+
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344567777777777777777777777777777777777666667777666443
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.12 E-value=0.21 Score=47.10 Aligned_cols=86 Identities=17% Similarity=0.136 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHH---------
Q 043204 298 SYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVR--------- 368 (504)
Q Consensus 298 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------- 368 (504)
+...+..-+.+...+.-|-++|..|-+. ..+++.....+++++|..+-++ ..+ ..||..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~-hPe--~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK-HPE--FKDDVYMPYAQWLAE 816 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh-Ccc--ccccccchHHHHhhh
Confidence 3333333333446677778888777543 3566777888888888877665 322 234432
Q ss_pred --HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043204 369 --VYNILLKGLCDAGNSAVAVMYLKKMSK 395 (504)
Q Consensus 369 --~~~~l~~~~~~~~~~~~a~~~~~~~~~ 395 (504)
-|...-.+|.++|+-.+|.++++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122333456677777777777777654
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.12 E-value=0.12 Score=42.73 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=10.7
Q ss_pred HHHHhhcCcHHHHHHHHHHHHhc
Q 043204 410 VDGLCRDGRFLEASRVLEEMLIR 432 (504)
Q Consensus 410 ~~~~~~~g~~~~A~~~~~~~~~~ 432 (504)
.+.|.+.|.+..|..-++.+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 34444555555555555555443
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.11 E-value=0.0036 Score=41.58 Aligned_cols=65 Identities=25% Similarity=0.133 Sum_probs=45.3
Q ss_pred HHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043204 411 DGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSS 478 (504)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 478 (504)
..|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|.+.|++..+. .|+......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHHH
Confidence 45677788888888888887764 345666666777777888888888888888754 455544433
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.08 E-value=0.18 Score=44.37 Aligned_cols=297 Identities=18% Similarity=0.144 Sum_probs=169.7
Q ss_pred HHHHHHHHHh--cchHHHHHHHHHHhhcCCCCcchHHHHHHHHH--HHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043204 118 FNTLLKEMVK--ESKLEAAHILFLRSCYGWEVKSRIQSLNLLMD--VLCQCRRSDLALHVFQEMDFQGCYPDRESYHILM 193 (504)
Q Consensus 118 ~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 193 (504)
|.+|-.++.. .|+-..|.++-.+.... +..|....-.|+. +-.-.|+++.|.+-|+.|.. |+.|-..=+
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGL 157 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGL 157 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhH
Confidence 3444444443 46777777776655421 1222222222332 23346999999999999986 333333323
Q ss_pred HH----HHhcCCHHHHHHHHHHHHHHHhhCCCCc-CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhc
Q 043204 194 KG----LCNDRRLNEATHLLYSMFWRISQKGSGE-DIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDL 268 (504)
Q Consensus 194 ~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 268 (504)
++ .-+.|+.+.|.++-+... . ..| -...+..++...+..|+|+.|+++++.-....+...+..-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa----~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae----- 226 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAA----E--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE----- 226 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH----h--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH-----
Confidence 32 346788888888877662 2 222 2467788899999999999999999887665432111100
Q ss_pred cccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCcchhhH-HHHHHHHhcC
Q 043204 269 CPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNE---GRIVEGDKVLDEMRTKGFWPSLVMY-EAKLAALFKD 344 (504)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 344 (504)
..-..++.+-... -+...|...-.+..+ +.||..-- ..-..++.+.
T Consensus 227 ----------------------------R~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d 276 (531)
T COG3898 227 ----------------------------RSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRD 276 (531)
T ss_pred ----------------------------HHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhc
Confidence 0111111111111 334444444444433 33443322 2234567888
Q ss_pred CCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCch-hhHHHHHHHHhhcCcHHHHH
Q 043204 345 GMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANG-ETYGILVDGLCRDGRFLEAS 423 (504)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~ 423 (504)
|+..++-.+++. +-+. .|...++. .|.+...-+.+..-+++..+...++||. ...-.+..+-...|++..|.
T Consensus 277 ~~~rKg~~ilE~-aWK~--ePHP~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 277 GNLRKGSKILET-AWKA--EPHPDIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred cchhhhhhHHHH-HHhc--CCChHHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 888888888887 4444 34443332 2333333344444455554443556653 45555667777788888777
Q ss_pred HHHHHHHhcCcCCCcchHHHHHHHH-HccCCHHHHHHHHHHHHHcCCCC
Q 043204 424 RVLEEMLIRSYWPCVETYNVLIRGL-CSIGKQYEAVMWLEEMISQAKLP 471 (504)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p 471 (504)
.--+..... .|....|..|.+.- ...|+-.++...+-+..+..-.|
T Consensus 350 a~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 350 AKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 766665543 47777777777654 34588888888888887654333
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.02 E-value=0.006 Score=41.18 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCC-cC-HHHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 043204 187 ESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSG-ED-IVIYRTLLFALCDQGKIQDAMQILEKILR 253 (504)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 253 (504)
.+|+.+...|...|++++|+..|++........|.. |+ ..++..+..+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666667777777777777777765443333322 22 45677777778888888888887777654
No 215
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.99 E-value=0.018 Score=49.29 Aligned_cols=95 Identities=9% Similarity=0.013 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHhhcCCCCcc-hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCC--CCCHhhHHHHHH
Q 043204 118 FNTLLKEMVKESKLEAAHILFLRSCYGWEVKS-RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGC--YPDRESYHILMK 194 (504)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~ 194 (504)
|...+..+.+.|++++|...|+.+....+-.+ ....+..+...|...|++++|...|+.+.+.-. ......+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444555555555555543321110 012233344555555555555555555544310 011222333334
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 043204 195 GLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 195 ~~~~~~~~~~a~~~~~~~ 212 (504)
.+...|+.++|..+|+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 444555555555555555
No 216
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.94 E-value=0.07 Score=50.31 Aligned_cols=165 Identities=12% Similarity=0.024 Sum_probs=109.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHH-----HHHHHHHHHHh----cCChHHHHHHHHHHHHhcCCCCch
Q 043204 333 MYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVR-----VYNILLKGLCD----AGNSAVAVMYLKKMSKQVGCVANG 403 (504)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~ 403 (504)
.+..++....-.|+-+.+++.+.+.....++.-... .|..++..++. ..+.+.|.++++.+.+. -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 345667777778888888888887555554443222 23333333332 45678899999998865 4666
Q ss_pred hhHHHH-HHHHhhcCcHHHHHHHHHHHHhcC---cCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043204 404 ETYGIL-VDGLCRDGRFLEASRVLEEMLIRS---YWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSL 479 (504)
Q Consensus 404 ~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 479 (504)
..|... .+.+...|++++|.+.|++..... .+.....+.-+...+.-.++|++|.+.|.++.+.. .-+..+|.-+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 555433 356777899999999999766421 12234555667777888999999999999998753 3455666666
Q ss_pred HHHHhcCCCch-------hHHHHHHHHhh
Q 043204 480 VASVCCNTADL-------NVCRKTLEQLS 501 (504)
Q Consensus 480 l~~~~~~~~~~-------~~a~~~~~~~~ 501 (504)
..++.-..++. ++|.++++++.
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 66655555556 77777777654
No 217
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.91 E-value=0.27 Score=43.52 Aligned_cols=109 Identities=19% Similarity=0.130 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043204 227 IYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDL 306 (504)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 306 (504)
+.+..+.-+...|+...|.++-.+. . .|+...|...+.++
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F-----k-----------------------------------v~dkrfw~lki~aL 218 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF-----K-----------------------------------VPDKRFWWLKIKAL 218 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc-----C-----------------------------------CcHHHHHHHHHHHH
Confidence 4555667777888888777776554 1 15777777788888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHH
Q 043204 307 YNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVA 386 (504)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 386 (504)
+..++|++...+... . -++..|..++.+|.+.|+..+|..++.. ++ +..-+..|.++|++.+|
T Consensus 219 a~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~~eA~~yI~k------~~-----~~~rv~~y~~~~~~~~A 281 (319)
T PF04840_consen 219 AENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNKKEASKYIPK------IP-----DEERVEMYLKCGDYKEA 281 (319)
T ss_pred HhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCHHHHHHHHHh------CC-----hHHHHHHHHHCCCHHHH
Confidence 888888776665432 1 2457788888888888888888777664 11 13445667788888877
Q ss_pred HHHHHH
Q 043204 387 VMYLKK 392 (504)
Q Consensus 387 ~~~~~~ 392 (504)
.+.--+
T Consensus 282 ~~~A~~ 287 (319)
T PF04840_consen 282 AQEAFK 287 (319)
T ss_pred HHHHHH
Confidence 665444
No 218
>PRK15331 chaperone protein SicA; Provisional
Probab=96.91 E-value=0.0091 Score=45.80 Aligned_cols=93 Identities=10% Similarity=-0.110 Sum_probs=65.5
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc
Q 043204 50 SMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES 129 (504)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (504)
....-+-..|++++|..+|+-+...+ +-+..-|..|..++-..+++++|+..|......+. .|...+-.....+...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 44455567788888888888877766 55566677777777778888888888886544332 22233356777788888
Q ss_pred hHHHHHHHHHHhhcC
Q 043204 130 KLEAAHILFLRSCYG 144 (504)
Q Consensus 130 ~~~~a~~~~~~~~~~ 144 (504)
+.+.|...|+.....
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 888888888887764
No 219
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.12 Score=43.86 Aligned_cols=148 Identities=14% Similarity=0.078 Sum_probs=87.9
Q ss_pred HHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHH
Q 043204 53 GILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLE 132 (504)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 132 (504)
......|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+....-.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 44567777777887777777665 44456666777777788888888888877664432222222223344455554444
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC--CCCCCHhhHHHHHHHHHhcCCHHHH
Q 043204 133 AAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ--GCYPDRESYHILMKGLCNDRRLNEA 205 (504)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a 205 (504)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+... |.. |...-..++..+.-.|.-+.+
T Consensus 221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence 444444444332 124445566777777888888888766655543 332 555666677766666643333
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.21 Score=41.46 Aligned_cols=130 Identities=13% Similarity=-0.027 Sum_probs=61.3
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHH-----HHH
Q 043204 49 ASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNT-----LLK 123 (504)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----ll~ 123 (504)
+.+++.+.-.+.+.-...++.++.+...+.++.....+.+.-.+.||.+.|...|+...+..-..+..+++. ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 444455555555555555555555554444555555555555556666666666655443322222222222 222
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ 180 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (504)
.|.-.+++..|...|.++....+- +...-|.-.-+..-.|+...|++.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~--~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR--NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCC--chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333445555555555555443222 2222233222333345555566665555554
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.84 E-value=0.019 Score=42.66 Aligned_cols=54 Identities=9% Similarity=-0.059 Sum_probs=34.0
Q ss_pred CCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHHH
Q 043204 144 GWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ-GCYPDRESYHILMKGLC 197 (504)
Q Consensus 144 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~ 197 (504)
..+..|+..+..+++.+|+..|++..|.++.+...+. +++.+..+|..|+.-+.
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3455666666666677776667777777766666543 55555666666666443
No 222
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.82 E-value=0.079 Score=49.69 Aligned_cols=89 Identities=20% Similarity=0.105 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcc------
Q 043204 366 TVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVE------ 439 (504)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------ 439 (504)
+..+...+...+.+...+..|-++|.+|-.. ..++......+++.+|..+-++..+. .|+..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqw 813 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQW 813 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHH
Confidence 4445555555555667777788888877532 45677788888888888888776653 34432
Q ss_pred -----hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 440 -----TYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 440 -----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
-|...-.+|.++|+..+|.++++++..
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 233445678889999999999998864
No 223
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.81 E-value=0.61 Score=46.12 Aligned_cols=162 Identities=15% Similarity=0.099 Sum_probs=76.4
Q ss_pred HHHHHHH-hcCChhHHHHHHHHHHhcCCCCCcchh-----cHHHHHHHHhccCChhHHHHHHHHhhcCC----CCccHHH
Q 043204 13 YLSQIIK-KQKSPLTALKIFKEAKEKYPNYRHNGP-----VYASMIGILSESNRITEMKEVIDQMKGDS----CECKDSV 82 (504)
Q Consensus 13 ~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 82 (504)
.+...|. ...+++.|...+++....-. +++.. .-..++..+.+.+... |...+++..+.- ..+....
T Consensus 64 ~la~iL~~eT~n~~~Ae~~L~k~~~l~~--~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 64 RLASILLEETENLDLAETYLEKAILLCE--RHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 3444444 46677777777776654421 11211 1223344554444433 776666655422 1223333
Q ss_pred HHHH-HHHHHhcCChhHHHHHHHHhhhCC---CCccHHHHHHHHHHHHh--cchHHHHHHHHHHhhc--------CCCCc
Q 043204 83 FATA-IRTYARAGQLNEAVSLFKNLSQFN---CVNWTQSFNTLLKEMVK--ESKLEAAHILFLRSCY--------GWEVK 148 (504)
Q Consensus 83 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~--------~~~~~ 148 (504)
|..+ +..+...+++..|.+.++.+.... ..|...++..++.+... .+..+.+.+.++++.. .....
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 4433 333333367777777777665422 23334444445444442 2334444444444311 00123
Q ss_pred chHHHHHHHHHHH--hhcCCHHHHHHHHHHh
Q 043204 149 SRIQSLNLLMDVL--CQCRRSDLALHVFQEM 177 (504)
Q Consensus 149 ~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 177 (504)
|-..+|..+++.+ ...|+++.+...++++
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455666665543 3456655555544433
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.80 E-value=0.029 Score=42.08 Aligned_cols=79 Identities=11% Similarity=0.020 Sum_probs=61.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC
Q 043204 16 QIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAG 94 (504)
Q Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (504)
....+.|++++|.+.|+.+..++|.-.-...+...++.++.+.+++++|...+++.++........-|...+.+++...
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 4556788999999999999999987666777888889999999999999999999998873333344666666665543
No 225
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.35 Score=43.06 Aligned_cols=51 Identities=8% Similarity=0.032 Sum_probs=26.0
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHH
Q 043204 89 TYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLR 140 (504)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 140 (504)
.+.+..++..|+..+...++..+.. +.-|..-...+...+++++|..-.+.
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~ 108 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQ 108 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhh
Confidence 3444555666666666655554322 44444444455555555555544433
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.64 Score=44.85 Aligned_cols=108 Identities=9% Similarity=0.043 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHH
Q 043204 369 VYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGL 448 (504)
Q Consensus 369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 448 (504)
+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+..+ ++.-|...+.+|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 44445556678888889888776653 4788888888889999999888666554332 377788899999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHH
Q 043204 449 CSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTL 497 (504)
Q Consensus 449 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 497 (504)
.+.|+.++|.+++-+.. |. + ....+|.+.|+ +.+|.+..
T Consensus 755 ~~~~n~~EA~KYiprv~--~l-~------ekv~ay~~~~~-~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVG--GL-Q------EKVKAYLRVGD-VKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccC--Ch-H------HHHHHHHHhcc-HHHHHHHH
Confidence 99999999999998874 22 1 34555566666 66665544
No 227
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.69 E-value=0.051 Score=39.52 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=61.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHH---HHHHHHHHHHh
Q 043204 16 QIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDS---VFATAIRTYAR 92 (504)
Q Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 92 (504)
-+++..|+++.|++.|.+.+..-|. +..+||.-..++.-+|+.++|++-+++..+..-..... .|..-...|..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~---raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE---RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc---chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3456677888888888877777665 67778877777777788888877777776543122221 23334445666
Q ss_pred cCChhHHHHHHHHhhhCC
Q 043204 93 AGQLNEAVSLFKNLSQFN 110 (504)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~ 110 (504)
.|+.+.|..-|+...+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 777777777777666655
No 228
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.66 E-value=0.4 Score=41.91 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHHHhh----CCCCcC-----HHHHHHHHHHHHhcCchh---HHHHHHHHHHHcCCCCCcchhhhhhc
Q 043204 201 RLNEATHLLYSMFWRISQ----KGSGED-----IVIYRTLLFALCDQGKIQ---DAMQILEKILRKGLKAPKSRRHRIDL 268 (504)
Q Consensus 201 ~~~~a~~~~~~~~~~~~~----~~~~~~-----~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~ 268 (504)
+++.|..++++.++-+.. ....|+ ..++..++.+|...+..+ +|..+++.+.... |+....+.+-+
T Consensus 51 ~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l 128 (278)
T PF08631_consen 51 KYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKL 128 (278)
T ss_pred ChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence 777777777776554322 122233 245667777887777644 4555666664432 22233333333
Q ss_pred cccCCCCChHHHHHHHHHHHHc
Q 043204 269 CPCNDGEDIEGAKSLINEALIR 290 (504)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~ 290 (504)
.++.+.++.+.+.+.+.+|+..
T Consensus 129 ~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 129 EILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHhccCChhHHHHHHHHHHHh
Confidence 3444455555555555555544
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=96.65 E-value=0.09 Score=40.52 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=52.2
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHH
Q 043204 90 YARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDL 169 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 169 (504)
+-..|++++|..+|.-+.-.++.. ..-+..|...+...+++++|...|.....-..-.|. ..--...+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n-~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~--p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYN-PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR--PVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC--ccchHHHHHHHhCCHHH
Confidence 345677777777777666554332 334456666666677777777777654322111122 22335566777777777
Q ss_pred HHHHHHHhhhC
Q 043204 170 ALHVFQEMDFQ 180 (504)
Q Consensus 170 a~~~~~~~~~~ 180 (504)
|.+.|....+.
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 77777776663
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.65 E-value=0.013 Score=39.48 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHH
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQE 176 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~ 176 (504)
+++.+..+|...|++++|++++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444444
No 231
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.63 E-value=0.0034 Score=36.62 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=29.8
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHH
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMI 52 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 52 (504)
++..+...|.+.|++++|+++|+++.+..|+ |...|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~---~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD---DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---CHHHHHHhh
Confidence 3556777888888888888888888888776 666665554
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=96.61 E-value=0.23 Score=45.38 Aligned_cols=158 Identities=12% Similarity=0.069 Sum_probs=94.9
Q ss_pred hHHHHHHHh--cC---ChhHHHHHHHHHH---hcCCCCCcchhcHHHHHHHHhc---------cCChhHHHHHHHHhhcC
Q 043204 12 TYLSQIIKK--QK---SPLTALKIFKEAK---EKYPNYRHNGPVYASMIGILSE---------SNRITEMKEVIDQMKGD 74 (504)
Q Consensus 12 ~~l~~~~~~--~~---~~~~A~~~~~~~~---~~~p~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~ 74 (504)
...+++... .+ ..+.|+.+|+++. +.+|+ ....|..+..++.. .....+|.++-++..+.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~---~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL---KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc---cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 555555444 22 3467888899988 55554 34455444433221 23445677777777777
Q ss_pred CCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHH
Q 043204 75 SCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSL 154 (504)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (504)
+ +.|+.+...+..+..-.++++.|...|++....++ ..+.+|........-.|+.++|.+.+++...-.+...-....
T Consensus 334 d-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~ 411 (458)
T PRK11906 334 T-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVI 411 (458)
T ss_pred C-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHH
Confidence 7 77777777777777777788888888888777652 234445444555556777888888877755443333333333
Q ss_pred HHHHHHHhhcCCHHHHHHHHH
Q 043204 155 NLLMDVLCQCRRSDLALHVFQ 175 (504)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~ 175 (504)
...++.|+..+ .+.|.+++-
T Consensus 412 ~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 412 KECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHcCCc-hhhhHHHHh
Confidence 44444555443 455555553
No 233
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.8 Score=44.84 Aligned_cols=119 Identities=9% Similarity=0.098 Sum_probs=69.7
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHH----HHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVF----ATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLL 122 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (504)
....-++.+.+..-++-|..+-+.-. .+..+. .....-+.+.|++++|..-|-+-... +.| ..++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 35556666667777777766654432 223333 33334445678888887777655432 233 3556
Q ss_pred HHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q 043204 123 KEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMD 178 (504)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (504)
.-|....+...-..+++.+.+..-. +...-..|+.+|.+.++.++..++.+...
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla--~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA--NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc--cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 6666666666666667666654322 22333667788888877777666665544
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.61 E-value=0.15 Score=37.30 Aligned_cols=64 Identities=16% Similarity=0.114 Sum_probs=44.9
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 043204 405 TYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAK 469 (504)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 469 (504)
.....++.....|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++-+++.+.-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 4455667778888888888888887753 367788888888889999999999888888888775
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.18 Score=43.43 Aligned_cols=152 Identities=7% Similarity=-0.083 Sum_probs=72.8
Q ss_pred ccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---CCCccHHHHHHHHHHHHhcchHHH
Q 043204 57 ESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQF---NCVNWTQSFNTLLKEMVKESKLEA 133 (504)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~ 133 (504)
..|+..+|...++++.+.. |.|...+...=.+|.-.|+...-...++.+... +.+...++...+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4455555555566655543 445555555555566666666555555555432 222222222223333445566666
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC---C-CCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 043204 134 AHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ---G-CYPDRESYHILMKGLCNDRRLNEATHLL 209 (504)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 209 (504)
|++.-++..+-+ +.|.-.-.++...+--.|+..++.+...+-... + +... .-|-...-.+...+.++.|+++|
T Consensus 194 AEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlas-HNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLAS-HNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHh-hhhHHHHHhhhcccchhHHHHHH
Confidence 666665555432 223334444555555556666666555433221 0 0111 11222233344556666666666
Q ss_pred HHH
Q 043204 210 YSM 212 (504)
Q Consensus 210 ~~~ 212 (504)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 543
No 236
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.55 E-value=0.93 Score=44.85 Aligned_cols=188 Identities=13% Similarity=0.116 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHhcCCCCCcc--hhcHHHHHHHHh-ccCChhHHHHHHHHhhcCCCCccHH-----HHHHHHHHHHhcCCh
Q 043204 25 LTALKIFKEAKEKYPNYRHN--GPVYASMIGILS-ESNRITEMKEVIDQMKGDSCECKDS-----VFATAIRTYARAGQL 96 (504)
Q Consensus 25 ~~A~~~~~~~~~~~p~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~ 96 (504)
..|++.++.+.+. +.+.|. ..++..+...+. ...+++.|+..+++.....-.++-. ....+++.+.+.+..
T Consensus 38 ~~ai~CL~~~~~~-~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 38 ATAIKCLEAVLKQ-FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 4467777777742 233333 445666777766 6789999999998875433222221 234456666666655
Q ss_pred hHHHHHHHHhhh----CCCCccHHHHHHH-HHHHHhcchHHHHHHHHHHhhcCCC--CcchHHHHHHHHHHHh--hcCCH
Q 043204 97 NEAVSLFKNLSQ----FNCVNWTQSFNTL-LKEMVKESKLEAAHILFLRSCYGWE--VKSRIQSLNLLMDVLC--QCRRS 167 (504)
Q Consensus 97 ~~a~~~~~~~~~----~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~~~~ 167 (504)
. |.+.++...+ .+..++...|.-+ +..+...++...|.+.++.+..... ..|-+.++..++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 8888887553 3444666666665 4444444799999999988765432 3444555555555443 44656
Q ss_pred HHHHHHHHHhhhCC---------CCCCHhhHHHHHHHH--HhcCCHHHHHHHHHHHHH
Q 043204 168 DLALHVFQEMDFQG---------CYPDRESYHILMKGL--CNDRRLNEATHLLYSMFW 214 (504)
Q Consensus 168 ~~a~~~~~~~~~~~---------~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~ 214 (504)
+.+.+.++++.... ..|-..+|..++..+ ...|+++.+.+.++++..
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777663321 123455666666654 467777777777766643
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.51 E-value=0.034 Score=50.32 Aligned_cols=64 Identities=16% Similarity=0.086 Sum_probs=47.6
Q ss_pred CCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcch---hcHHHHHHHHhccCChhHHHHHHHHhhcC
Q 043204 8 LLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNG---PVYASMIGILSESNRITEMKEVIDQMKGD 74 (504)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (504)
...++.+..+|...|++++|+..|++.++.+|+ +. .+|..+..+|...|+.++|++.+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd---~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPN---PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344667777788888888888888888877665 33 34777788888888888888888887765
No 238
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.46 E-value=0.17 Score=44.11 Aligned_cols=172 Identities=14% Similarity=0.013 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcch---HHHHHHHHHHHhhcCCHHHHHHHHHHhhhCC-----CCCCHhh
Q 043204 117 SFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSR---IQSLNLLMDVLCQCRRSDLALHVFQEMDFQG-----CYPDRES 188 (504)
Q Consensus 117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~ 188 (504)
.|..+.+++-+.-++.+++.+-..-...++..|. -....++..++.-.+.++++++.|+...+-- .-.....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444555555555555555555544444443331 1122335556666677777777777665421 1122346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHH-----HHHHHHHHhcCchhHHHHHHHHHHHcCC----CCC
Q 043204 189 YHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIY-----RTLLFALCDQGKIQDAMQILEKILRKGL----KAP 259 (504)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~ 259 (504)
+-.|-..|.+..|+++|.-+..+..+.....++..=..-| ..|.-++-..|....|.+.-++..+..+ .+.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 7777777888888888877777665544444433211222 2344566677888778777777655433 222
Q ss_pred cchhhhhhccccCCCCChHHHHHHHHHHH
Q 043204 260 KSRRHRIDLCPCNDGEDIEGAKSLINEAL 288 (504)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 288 (504)
.......+...|...|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 23333345666777777777777666554
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.43 E-value=0.26 Score=37.75 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=58.4
Q ss_pred HHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc
Q 043204 49 ASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKE 128 (504)
Q Consensus 49 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (504)
..++..+...+.+......++.+...+ ..+...++.++..|++.+ .....+.+.. . .+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~----~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K----SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c----cccCCHHHHHHHHHHc
Confidence 445555555555566666666655554 344555566666665542 2222333321 1 1111223455555555
Q ss_pred chHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhc-CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH
Q 043204 129 SKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQC-RRSDLALHVFQEMDFQGCYPDRESYHILMKGLC 197 (504)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 197 (504)
+-++++..++.++... ...+..+... ++++.|.+++.+- -+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~~----------~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGNF----------KDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcCH----------HHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 5555555555554211 1222223333 5566666655541 14445555555443
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.41 E-value=0.16 Score=46.48 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=74.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 043204 14 LSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARA 93 (504)
Q Consensus 14 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
++.-.-+..++++-++.-.++++.+|+ -..+|..|. --......++.+++++..+.| ...+ .+.
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pd---CAdAYILLA--EEeA~Ti~Eae~l~rqAvkAg----E~~l-------g~s 237 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPD---CADAYILLA--EEEASTIVEAEELLRQAVKAG----EASL-------GKS 237 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhh---hhHHHhhcc--cccccCHHHHHHHHHHHHHHH----HHhh-------chh
Confidence 344444555666666666666665443 222332221 122344567777777666543 0000 000
Q ss_pred CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHH
Q 043204 94 GQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHV 173 (504)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 173 (504)
...+..-..++.+..++..+-..+-..+...+-+.|+.++|.+.|+++.+..+...+......|+.++...+.+.++..+
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 00000001112222223233333334455555666777777777777765433333344556677777777777777777
Q ss_pred HHHhhh
Q 043204 174 FQEMDF 179 (504)
Q Consensus 174 ~~~~~~ 179 (504)
+.+-.+
T Consensus 318 L~kYdD 323 (539)
T PF04184_consen 318 LAKYDD 323 (539)
T ss_pred HHHhcc
Confidence 776643
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.31 E-value=0.053 Score=45.44 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=54.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCC--CccHHHHHHHHHHHHhcCChh
Q 043204 20 KQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSC--ECKDSVFATAIRTYARAGQLN 97 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 97 (504)
+.|++..|...|....+.+|+-.-...++--|...+...|++++|..+|..+.+... +--+..+.-|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 445577777777777777666444445555566677777777777777766665421 111234555555666666666
Q ss_pred HHHHHHHHhhhC
Q 043204 98 EAVSLFKNLSQF 109 (504)
Q Consensus 98 ~a~~~~~~~~~~ 109 (504)
+|..+|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 242
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.31 E-value=0.25 Score=43.15 Aligned_cols=235 Identities=14% Similarity=0.076 Sum_probs=147.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHH----hhcCC-CCccHHHHHHHHHHHHh
Q 043204 18 IKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQ----MKGDS-CECKDSVFATAIRTYAR 92 (504)
Q Consensus 18 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~ 92 (504)
+..+.+.++|+..+.+.+.+..+......+|..+..+..+.|.+++++..--. ..+.. -..--..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999888876433222345677777888888888877654322 11111 00111345566666666
Q ss_pred cCChhHHHHHHHHhhhC-CCCc---cHHHHHHHHHHHHhcchHHHHHHHHHHhhc----CCCCcchHHHHHHHHHHHhhc
Q 043204 93 AGQLNEAVSLFKNLSQF-NCVN---WTQSFNTLLKEMVKESKLEAAHILFLRSCY----GWEVKSRIQSLNLLMDVLCQC 164 (504)
Q Consensus 93 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ 164 (504)
.-++.+++.+-..-... |..| .-....++..++...+.++++++.|+.... ..+.-....++-.|-..|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66677777666543321 1111 123445677788888999999999987653 112222356788899999999
Q ss_pred CCHHHHHHHHHHhhh----CCCCCCHh-hH-----HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcC-HHHHHHHHH
Q 043204 165 RRSDLALHVFQEMDF----QGCYPDRE-SY-----HILMKGLCNDRRLNEATHLLYSMFWRISQKGSGED-IVIYRTLLF 233 (504)
Q Consensus 165 ~~~~~a~~~~~~~~~----~~~~p~~~-~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 233 (504)
.|+++|.-+..+..+ .++. |.. -| ..+.-++...|..-.|.+.-++..+.....|-.+. ......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 999998876655433 2222 221 12 23334566788888888887777554455664432 234456778
Q ss_pred HHHhcCchhHHHHHHHHHHH
Q 043204 234 ALCDQGKIQDAMQILEKILR 253 (504)
Q Consensus 234 ~~~~~g~~~~a~~~~~~~~~ 253 (504)
.|-..|+.+.|..-|++...
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 89999999999988887644
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.069 Score=47.29 Aligned_cols=94 Identities=11% Similarity=-0.044 Sum_probs=50.2
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043204 405 TYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVC 484 (504)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 484 (504)
++..|.-+|.+.+++..|.+.-...++.+ ++|....-.=..+|...|+++.|+..|+++++ +.|+......=+..|.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 34555556666666666666666666654 44555555555666666666666666666663 3455444433333322
Q ss_pred cCCCc-hhHHHHHHHHhh
Q 043204 485 CNTAD-LNVCRKTLEQLS 501 (504)
Q Consensus 485 ~~~~~-~~~a~~~~~~~~ 501 (504)
..... .+...++|..|.
T Consensus 336 ~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 22222 223355555554
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.22 E-value=0.38 Score=45.50 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=59.6
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCcchHH-----HHHHHHHHHhh----cCCHHHHHHHHHHhhhCCCCCCHhhHHHH-H
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVKSRIQ-----SLNLLMDVLCQ----CRRSDLALHVFQEMDFQGCYPDRESYHIL-M 193 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~ 193 (504)
...-.||-+.+++.+....+..++..... .|+.++..+.. ..+.+.|.++++.+.+. -|+...|... .
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~g 274 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEG 274 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 33344555666666655554444432221 23333322222 34555666666666654 4554444332 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 194 KGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
+.+...|++++|.+.|+..... ...-.+.....+--+.-++.-.++|++|.+.|..+.+.
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~-q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIES-QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccc-hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 3344566666666666654210 00000112233334445555556666666666666553
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.21 E-value=0.77 Score=42.26 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043204 335 EAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMS 394 (504)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 394 (504)
..+..++-+.|+.++|++.++++++.............|+.++...+.+.++..++.+..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 345555556677777777777644444322233455566667777777777777666654
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.20 E-value=0.88 Score=40.91 Aligned_cols=97 Identities=12% Similarity=-0.032 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCc--chHHHHHHHHHHHhh---cCCHHHHHHHHHHhhhCCCCCCHhhHH
Q 043204 116 QSFNTLLKEMVKESKLEAAHILFLRSCYGWEVK--SRIQSLNLLMDVLCQ---CRRSDLALHVFQEMDFQGCYPDRESYH 190 (504)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~ 190 (504)
.+...++-.|-...+++..+++++.+..-+... .....-....-++-+ .|+.++|++++..+....-.+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344455556777778888888887776442211 111111223344555 677888888877755555566777777
Q ss_pred HHHHHHHh---------cCCHHHHHHHHHHH
Q 043204 191 ILMKGLCN---------DRRLNEATHLLYSM 212 (504)
Q Consensus 191 ~l~~~~~~---------~~~~~~a~~~~~~~ 212 (504)
.+.+.|-. ....++|...|.+.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 76665521 12345555555554
No 247
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.19 E-value=1.8 Score=44.37 Aligned_cols=82 Identities=18% Similarity=0.110 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcc--hHHHHHHHH
Q 043204 371 NILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVE--TYNVLIRGL 448 (504)
Q Consensus 371 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~ 448 (504)
.+....+...+.+++|.-+|+..-+. .-.+.+|..+|++.+|..+..++... -+.. +-..|+.-+
T Consensus 943 ~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 943 EAYADHLREELMSDEAALMYERCGKL----------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 33334444556666666666654321 33455666667777776666655431 1111 124555566
Q ss_pred HccCCHHHHHHHHHHHH
Q 043204 449 CSIGKQYEAVMWLEEMI 465 (504)
Q Consensus 449 ~~~g~~~~a~~~~~~~~ 465 (504)
...+++-+|-+++.+..
T Consensus 1010 ~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHcccchhHHHHHHHHh
Confidence 66677767666666654
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.18 E-value=0.92 Score=40.82 Aligned_cols=163 Identities=11% Similarity=-0.034 Sum_probs=79.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC---CCcchhhHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 043204 301 AMAIDLYNEGRIVEGDKVLDEMRTKG---FWPSLVMYEAKLAALFK---DGMVDEALEVIEEEMVKGTFVPTVRVYNILL 374 (504)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (504)
.++-+|-...+++..+++++.+.... +.-....-....-++.+ .|+.++|++++...+. ..-.++..+|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHHHHH
Confidence 44444555566666666666665531 00011111122333444 6666666666665222 22345555655555
Q ss_pred HHHHh---------cCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcH----HHHHHHH----HHHHhcCc---
Q 043204 375 KGLCD---------AGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRF----LEASRVL----EEMLIRSY--- 434 (504)
Q Consensus 375 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~----~~~~~~~~--- 434 (504)
+.|-. ....++|...|.+.- .+.|+..+--.++..+...|.. .+..++- ....+.|.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 54421 122556666666544 3345443322222222223321 1222222 11222332
Q ss_pred CCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043204 435 WPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQ 467 (504)
Q Consensus 435 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (504)
..+-..+.+++.++.-.|++++|.+..++|.+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 233444566778888889999999999998855
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.17 E-value=0.27 Score=45.73 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=78.1
Q ss_pred hccCChhHHHHHHH--HhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHH
Q 043204 56 SESNRITEMKEVID--QMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEA 133 (504)
Q Consensus 56 ~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 133 (504)
.-.++++++.++.+ .+.. . .+....+.+++.+.+.|..+.|+++-.. . ..-.....+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~--i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-N--IPKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcc-c--CChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHH
Confidence 34556666555543 1211 1 1233456666666666777766665321 1 233445556677776
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043204 134 AHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMF 213 (504)
Q Consensus 134 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 213 (504)
|.++.++.. +...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+..
T Consensus 337 A~~~a~~~~-------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a- 399 (443)
T PF04053_consen 337 ALEIAKELD-------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA- 399 (443)
T ss_dssp HHHHCCCCS-------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH-
T ss_pred HHHHHHhcC-------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH-
Confidence 666653331 445677777777777777777777766553 455555566666666655555444
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 043204 214 WRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEK 250 (504)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (504)
...| -++....++...|+.++..+++.+
T Consensus 400 ---~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 ---EERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---HHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3332 234445555556666666666654
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.16 E-value=0.41 Score=36.68 Aligned_cols=131 Identities=13% Similarity=0.185 Sum_probs=92.2
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATA 86 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+......++..+...+.+.....+++.+...++ .+...++.++..|++.+ ..+..+.++. ..+......+
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~---~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~ 75 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLNS---ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKV 75 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc---cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHH
Confidence 345567889999989999999999999998743 47778999999998764 4455555552 1233445668
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc-chHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhh
Q 043204 87 IRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKE-SKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQ 163 (504)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (504)
++.|.+.+-++++..++..+... ...+..+... ++++.|.+.+.+.. +...|..++..+..
T Consensus 76 ~~~c~~~~l~~~~~~l~~k~~~~---------~~Al~~~l~~~~d~~~a~~~~~~~~-------~~~lw~~~~~~~l~ 137 (140)
T smart00299 76 GKLCEKAKLYEEAVELYKKDGNF---------KDAIVTLIEHLGNYEKAIEYFVKQN-------NPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHcCcHHHHHHHHHhhcCH---------HHHHHHHHHcccCHHHHHHHHHhCC-------CHHHHHHHHHHHHc
Confidence 88888989999999888776321 2344444444 78888888887632 34577777766653
No 251
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.13 E-value=0.21 Score=46.50 Aligned_cols=133 Identities=18% Similarity=0.131 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 043204 297 ASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKG 376 (504)
Q Consensus 297 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (504)
...+.++.-+-+.|..+.|+.+...-.. -.....+.|+++.|.++.++ .++...|..|...
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~-------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE-------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC-------CSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh-------cCcHHHHHHHHHH
Confidence 3355555555556666666665432211 12334556777777664433 3456677777777
Q ss_pred HHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHH
Q 043204 377 LCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYE 456 (504)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 456 (504)
....|+++-|.+.|++... +..|+-.|...|+.+.-.++.+....+| -++....++.-.|+.++
T Consensus 357 AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEE 420 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHH
T ss_pred HHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHH
Confidence 7777777777777776542 4556566667777777666666666554 24555555566677776
Q ss_pred HHHHHHHH
Q 043204 457 AVMWLEEM 464 (504)
Q Consensus 457 a~~~~~~~ 464 (504)
..+++.+-
T Consensus 421 cv~lL~~~ 428 (443)
T PF04053_consen 421 CVDLLIET 428 (443)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 66665544
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.22 Score=44.29 Aligned_cols=125 Identities=12% Similarity=0.042 Sum_probs=76.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCc------------chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHH
Q 043204 16 QIIKKQKSPLTALKIFKEAKEKYPNYRH------------NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVF 83 (504)
Q Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (504)
..|.+.|++..|...|+++....+...+ -..+++.+.-++.+.+++..|++.....+..+ ++|.-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4677788888888888887654321000 12345666667777777777777777777776 6677776
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHH-HHHHHHHhh
Q 043204 84 ATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEA-AHILFLRSC 142 (504)
Q Consensus 84 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~ 142 (504)
..-..++...|+++.|...|+.+.+..+.. ..+-+.|+..-.+..+... ..++|..|-
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777777777777777777654222 2333344444434333332 244555543
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.82 Score=39.04 Aligned_cols=177 Identities=16% Similarity=0.133 Sum_probs=112.3
Q ss_pred hHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHh
Q 043204 62 TEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRS 141 (504)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 141 (504)
+...+++++.... +.... ..-.......|++..|..+|....+..... ...-..+...|...|+++.|..++..+
T Consensus 120 sqlr~~ld~~~~~---~~e~~-~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 120 SQLRQFLDKVLPA---EEEEA-LAEAKELIEAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHHHhcCh---HHHHH-HHHhhhhhhccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3445555555432 22222 223445567889999999999887765443 455668888999999999999999887
Q ss_pred hcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC
Q 043204 142 CYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGS 221 (504)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 221 (504)
...... ........-|..+.+.....+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+++ ++.|.
T Consensus 195 P~~~~~-~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~--~d~~~ 269 (304)
T COG3118 195 PLQAQD-KAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR--RDRGF 269 (304)
T ss_pred cccchh-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcccc
Confidence 654211 11222223455566666666666666666553 22666777788888899999999888766653 33444
Q ss_pred CcCHHHHHHHHHHHHhcCchhHHHHHHH
Q 043204 222 GEDIVIYRTLLFALCDQGKIQDAMQILE 249 (504)
Q Consensus 222 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (504)
. |...-..++..+.-.|.-+.+...++
T Consensus 270 ~-d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 270 E-DGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred c-CcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4 55667777777777775444443333
No 254
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.03 E-value=0.33 Score=44.26 Aligned_cols=65 Identities=11% Similarity=0.140 Sum_probs=42.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcch--hhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 043204 295 SLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSL--VMYEAKLAALFKDGMVDEALEVIEEEMV 359 (504)
Q Consensus 295 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (504)
+...++.+..+|.+.|++++|+..|++..+.++.... .+|..+..+|...|+.++|++.+++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456667777777777777777777777665422111 3467777777777777777777777554
No 255
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.03 E-value=2.2 Score=43.84 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=37.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcchh--hHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhc
Q 043204 303 AIDLYNEGRIVEGDKVLDEMRTKGFWPSLV--MYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDA 380 (504)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (504)
+.+|-..|++.+|..+..++.... +.. +-..|+.-+...++.-+|-++..+ ... .| ...+..|++.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e-~~s---d~-----~~av~ll~ka 1039 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLE-YLS---DP-----EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHH-Hhc---CH-----HHHHHHHhhH
Confidence 344444455555555554443210 111 113455555666666666666554 221 11 1223345555
Q ss_pred CChHHHHHHHHHH
Q 043204 381 GNSAVAVMYLKKM 393 (504)
Q Consensus 381 ~~~~~a~~~~~~~ 393 (504)
..+++|..+....
T Consensus 1040 ~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1040 KEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHHHhc
Confidence 6666666655443
No 256
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.98 E-value=0.99 Score=39.46 Aligned_cols=228 Identities=11% Similarity=0.069 Sum_probs=125.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchhc-----HHHHHHHHhccC-ChhHHHHHHHHhhcC--------CCCccH---
Q 043204 18 IKKQKSPLTALKIFKEAKEKYPNYRHNGPV-----YASMIGILSESN-RITEMKEVIDQMKGD--------SCECKD--- 80 (504)
Q Consensus 18 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-----~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 80 (504)
..++|+.+.|...+.++....+...|+... +..........+ +++.|..++++..+. ...++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999998875333333321 222233334555 888888877665432 112222
Q ss_pred --HHHHHHHHHHHhcCChh---HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHH
Q 043204 81 --SVFATAIRTYARAGQLN---EAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLN 155 (504)
Q Consensus 81 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (504)
.++..++.+|...+..+ +|.++++.+.+.... ...++.--++.+.+.++.+.+.+.+.+|....+. ....+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~--~e~~~~ 159 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH--SESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc--ccchHH
Confidence 34677778888777654 455566666443222 2455556677777789999999999999876442 122334
Q ss_pred HHHHHH---hhcCCHHHHHHHHHHhhhCCCCCCHh-hHHHH-HH-H--HHhcCC------HHHHHHHHHHHHHHHhhCCC
Q 043204 156 LLMDVL---CQCRRSDLALHVFQEMDFQGCYPDRE-SYHIL-MK-G--LCNDRR------LNEATHLLYSMFWRISQKGS 221 (504)
Q Consensus 156 ~l~~~~---~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l-~~-~--~~~~~~------~~~a~~~~~~~~~~~~~~~~ 221 (504)
..+..+ .. .....+...++.+....+.|... ....+ +. . ..+.++ .+...++++.+. ...+.
T Consensus 160 ~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~---~~~~~ 235 (278)
T PF08631_consen 160 SILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVE---HSLGK 235 (278)
T ss_pred HHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHH---HHhcC
Confidence 444443 33 33456667777666554555543 11111 11 1 112211 444444444331 11222
Q ss_pred CcCHHHHHH---H----HHHHHhcCchhHHHHHHHHHH
Q 043204 222 GEDIVIYRT---L----LFALCDQGKIQDAMQILEKIL 252 (504)
Q Consensus 222 ~~~~~~~~~---l----~~~~~~~g~~~~a~~~~~~~~ 252 (504)
+.+..+-.+ + ...+.+.++++.|.++|+-..
T Consensus 236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 333333222 2 233456778888888887544
No 257
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.87 E-value=1.3 Score=40.09 Aligned_cols=434 Identities=11% Similarity=0.029 Sum_probs=220.5
Q ss_pred HHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 043204 27 ALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNL 106 (504)
Q Consensus 27 A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 106 (504)
-+++=+++. .+|. |..+|-.|+.-+..++..++..+++++|..-- +--+.+|..-+..-...+++...+.+|.+.
T Consensus 28 ~lrLRerIk-dNPt---nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rC 102 (660)
T COG5107 28 ELRLRERIK-DNPT---NILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRC 102 (660)
T ss_pred HHHHHHHhh-cCch---hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 335555554 4676 89999999999999999999999999998643 445567887788777789999999999998
Q ss_pred hhCCCCccHHHHHHHHHHHHhcchH------HHHHHHHHHhhcCCCCcch-HHHHHHHHHH---HhhcCC------HHHH
Q 043204 107 SQFNCVNWTQSFNTLLKEMVKESKL------EAAHILFLRSCYGWEVKSR-IQSLNLLMDV---LCQCRR------SDLA 170 (504)
Q Consensus 107 ~~~~~~~~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~------~~~a 170 (504)
.......| .|...+.--.+.+.. ....+.|+-...-.++.|- ...|+..+.. .-..|. .+..
T Consensus 103 L~k~l~ld--LW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 103 LKKSLNLD--LWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred HhhhccHh--HHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 87765544 444444433232211 1122233332222233332 2234444333 223344 4455
Q ss_pred HHHHHHhhhCCCCCCH-hhH------HHHHHHH-H------hcCCHHHHHHHHHHHHHHHhhCCCCc----CHHHHHH--
Q 043204 171 LHVFQEMDFQGCYPDR-ESY------HILMKGL-C------NDRRLNEATHLLYSMFWRISQKGSGE----DIVIYRT-- 230 (504)
Q Consensus 171 ~~~~~~~~~~~~~p~~-~~~------~~l~~~~-~------~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~-- 230 (504)
.+.+.++...-+. +. ..| ..=++-. + ..--+..|.+.++++.. ...|... +..+++.
T Consensus 181 R~~Y~ral~tP~~-nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~n--lt~Gl~v~~~~~~Rt~nK~~ 257 (660)
T COG5107 181 RNGYMRALQTPMG-NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQN--LTRGLSVKNPINLRTANKAA 257 (660)
T ss_pred HHHHHHHHcCccc-cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH--HhccccccCchhhhhhcccc
Confidence 6667777754221 11 111 1111110 0 11123445555555421 1122111 1111111
Q ss_pred ---------HHHHHHhc-----Cc--hhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCC
Q 043204 231 ---------LLFALCDQ-----GK--IQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIP 294 (504)
Q Consensus 231 ---------l~~~~~~~-----g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (504)
.|..=... |+ .....-++++.... .+-....+.-........+|-+.|.........- .|
T Consensus 258 r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y--~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sp 333 (660)
T COG5107 258 RTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY--FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SP 333 (660)
T ss_pred ccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CC
Confidence 11111110 00 01111222222211 0011111111112222333444444333322211 11
Q ss_pred ChhhHHHHHHHHHhc-CChhHHHHHHHHHHH-----------------------------CCCCcchhhHHHHHHHHhcC
Q 043204 295 SLASYSAMAIDLYNE-GRIVEGDKVLDEMRT-----------------------------KGFWPSLVMYEAKLAALFKD 344 (504)
Q Consensus 295 ~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~-----------------------------~~~~~~~~~~~~l~~~~~~~ 344 (504)
+ ....+.-|... .+-+.....|+...+ .....-..+|...++.-.+.
T Consensus 334 s---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~ 410 (660)
T COG5107 334 S---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRK 410 (660)
T ss_pred c---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 1 11111111111 111111111111110 00001234566677777777
Q ss_pred CCHHHHHHHHHHHHhcCC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhH-HHHHHHHhhcCcHHHH
Q 043204 345 GMVDEALEVIEEEMVKGT-FVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETY-GILVDGLCRDGRFLEA 422 (504)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A 422 (504)
.-++.|..+|-+ ..+.+ ..+++.++++++..++ .|++..|..+|+.-... -||...| .-.+.-+...++-+.|
T Consensus 411 ~Gl~aaR~~F~k-~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~na 485 (660)
T COG5107 411 RGLEAARKLFIK-LRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENA 485 (660)
T ss_pred hhHHHHHHHHHH-HhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHH
Confidence 778888888887 66666 5677778888886554 57788888888876654 2343333 4455666777888888
Q ss_pred HHHHHHHHhcCcCCC--cchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 043204 423 SRVLEEMLIRSYWPC--VETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCC 485 (504)
Q Consensus 423 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 485 (504)
..+|+...++ +..+ ...|..+|.--..-|+...|..+=++|.+ +.|...+.....+.|..
T Consensus 486 raLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 486 RALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 8888866654 2222 56788888887888888888888777774 34555555555544433
No 258
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.79 E-value=1.5 Score=39.95 Aligned_cols=416 Identities=12% Similarity=0.109 Sum_probs=200.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHH--HHhccCChhHHHHHHHHhhcC--CCC-----------
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIG--ILSESNRITEMKEVIDQMKGD--SCE----------- 77 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~--~~~----------- 77 (504)
.++.+|... +.+..........+..| ...|..+.. .+-+.+.+.+|.+.+...... +-.
T Consensus 51 rilnAffl~-nld~Me~~l~~l~~~~~-----~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l 124 (549)
T PF07079_consen 51 RILNAFFLN-NLDLMEKQLMELRQQFG-----KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQL 124 (549)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 344444433 45555555555555533 222333332 234667888888887766543 211
Q ss_pred -ccHHHHHHHHHHHHhcCChhHHHHHHHHhhhC----CCCccHHHHHHHHHHHHhcchH---------------HHHHHH
Q 043204 78 -CKDSVFATAIRTYARAGQLNEAVSLFKNLSQF----NCVNWTQSFNTLLKEMVKESKL---------------EAAHIL 137 (504)
Q Consensus 78 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~---------------~~a~~~ 137 (504)
+|-..=+..+..++..|++.++..+++++... ...-+..+|+.++-.+.+.=-+ +.+.-.
T Consensus 125 ~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY 204 (549)
T PF07079_consen 125 FSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFY 204 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHH
Confidence 11122255677788889999998888887653 2335667777766655544211 111111
Q ss_pred HHHhhcCC-----CCcchHHHHHHHHHHHhhc--CCHHHHHHHHHHhhhCCCCCCHhh-HHHHHHHHHhcCCHHHHHHHH
Q 043204 138 FLRSCYGW-----EVKSRIQSLNLLMDVLCQC--RRSDLALHVFQEMDFQGCYPDRES-YHILMKGLCNDRRLNEATHLL 209 (504)
Q Consensus 138 ~~~~~~~~-----~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~ 209 (504)
..++.... .+.|.......++....-. ....--.++++.....-+.|+-.. ...+...+.. +.+++..+-
T Consensus 205 ~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~c 282 (549)
T PF07079_consen 205 LKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFC 282 (549)
T ss_pred HHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHH
Confidence 11111000 1122222222222222211 111222233333333334454321 2222222222 445555444
Q ss_pred HHHHHHHhhCCCC----cCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHH
Q 043204 210 YSMFWRISQKGSG----EDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLIN 285 (504)
Q Consensus 210 ~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 285 (504)
+.+ ....+. .=+.++..++....+.++...|...+.-+... .|......-++ ...+.+.
T Consensus 283 e~i----a~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kll-----------ls~~~lq 345 (549)
T PF07079_consen 283 EAI----ASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLL-----------LSPKVLQ 345 (549)
T ss_pred HHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhh-----------cCHHHHH
Confidence 443 111111 12457788888888888888888888777654 33322222111 1112222
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHH---HHHhcCCC-HHHHHHHHHHHHhcC
Q 043204 286 EALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKL---AALFKDGM-VDEALEVIEEEMVKG 361 (504)
Q Consensus 286 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~~~~~~~~~~~ 361 (504)
.+... |...++.+ ..-+.+|+.....++. .......|+ .-+-+.|. -++|+++++..+.-.
T Consensus 346 ~Iv~~----DD~~~Tkl----------r~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft 410 (549)
T PF07079_consen 346 DIVCE----DDESYTKL----------RDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT 410 (549)
T ss_pred HHHhc----chHHHHHH----------HHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc
Confidence 22221 22222221 2223444444443322 111111122 22333444 777888887633322
Q ss_pred CCCccHHHHHHHH----HHHHhc---CChHHHHHHHHHHHHhcCCCCch----hhHHHHHHH--HhhcCcHHHHHHHHHH
Q 043204 362 TFVPTVRVYNILL----KGLCDA---GNSAVAVMYLKKMSKQVGCVANG----ETYGILVDG--LCRDGRFLEASRVLEE 428 (504)
Q Consensus 362 ~~~~~~~~~~~l~----~~~~~~---~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~--~~~~g~~~~A~~~~~~ 428 (504)
.-|..+-+.+. .+|.+. ..+.+-..+-+-+.+. |++|-. ..-|.|.++ +...|++.++.-.-..
T Consensus 411 --~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 411 --NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred --cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 23433333222 233322 2233333333333343 776643 344555544 3457888887766555
Q ss_pred HHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043204 429 MLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSS 478 (504)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 478 (504)
+.+ +.|++.+|..+.-+.....++++|..++..+ +|+..++++
T Consensus 488 L~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 488 LTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 555 5689999998888888889999999888876 466666554
No 259
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.57 E-value=0.078 Score=44.38 Aligned_cols=88 Identities=10% Similarity=0.185 Sum_probs=55.5
Q ss_pred CcchhcHHHHHHHHhcc-----CChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcC----------------ChhHHH
Q 043204 42 RHNGPVYASMIGILSES-----NRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAG----------------QLNEAV 100 (504)
Q Consensus 42 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 100 (504)
+.|..+|.+.+..+... +.++-....++.|.+.|+..|..+|+.|+..+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44666777777666543 445555666777888888888888888877654321 223456
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHHhcc
Q 043204 101 SLFKNLSQFNCVNWTQSFNTLLKEMVKES 129 (504)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (504)
+++++|...|+.||-.+-..|++++.+.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 66666666666666666666666665544
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.51 E-value=0.24 Score=36.20 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=34.3
Q ss_pred HHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 043204 54 ILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQ 108 (504)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (504)
+++..|+.+.|++.|.+....- |.+...||.-..++.-.|+.++|+.-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 4556666666666666666554 45556666666666666666666666666554
No 261
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.43 E-value=0.93 Score=35.23 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=21.9
Q ss_pred hcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhc
Q 043204 92 RAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCY 143 (504)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (504)
..|.++....-.+-+...+.+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444444444444443333233233333344444444444444444444443
No 262
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.41 E-value=0.16 Score=42.61 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=61.2
Q ss_pred ChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCC----------------CHHHHHHH
Q 043204 295 SLASYSAMAIDLYNE-----GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDG----------------MVDEALEV 353 (504)
Q Consensus 295 ~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~~ 353 (504)
|..+|...+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+.. +-+-++.+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 455555555555433 555666666777888888888888888887765432 23456778
Q ss_pred HHHHHhcCCCCccHHHHHHHHHHHHhcCCh
Q 043204 354 IEEEMVKGTFVPTVRVYNILLKGLCDAGNS 383 (504)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (504)
+++ |+..|+.||..+-..+++++.+.+-+
T Consensus 146 Leq-ME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQ-MEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHH-HHHcCCCCchHHHHHHHHHhcccccc
Confidence 887 88888888888888888888776644
No 263
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.41 E-value=0.75 Score=35.46 Aligned_cols=53 Identities=6% Similarity=0.063 Sum_probs=30.6
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcC
Q 043204 19 KKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGD 74 (504)
Q Consensus 19 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 74 (504)
.+.++.+++..+++-+.-..|+ .+...++.. ..+...|++.+|..+|+.+...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 3456677777777766665554 122233333 3345667777777777776554
No 264
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.40 E-value=0.015 Score=31.48 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=23.9
Q ss_pred HHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHH
Q 043204 31 FKEAKEKYPNYRHNGPVYASMIGILSESNRITEMK 65 (504)
Q Consensus 31 ~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~ 65 (504)
|+++.+.+|+ +..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~---n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN---NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC---CHHHHHHHHHHHHHCcCHHhhc
Confidence 5666677776 7778888888888888877775
No 265
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.39 E-value=0.38 Score=40.50 Aligned_cols=13 Identities=8% Similarity=0.258 Sum_probs=5.1
Q ss_pred hhHHHHHHHHHHH
Q 043204 312 IVEGDKVLDEMRT 324 (504)
Q Consensus 312 ~~~a~~~~~~~~~ 324 (504)
+..|..-|...++
T Consensus 157 y~~A~~~F~~fi~ 169 (262)
T COG1729 157 YAEAEQAFQAFIK 169 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 3444443333333
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.37 E-value=1.4 Score=36.92 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=32.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 373 LLKGLCDAGNSAVAVMYLKKMSKQVGCVAN-GETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 373 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
+.+.|.+.|.+..|..-+++|.+.+.-.+- ...+-.+..+|.+.|-.++|.+.-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445566667776666666666664222111 12344455666666666666665444443
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.34 E-value=0.034 Score=32.31 Aligned_cols=39 Identities=3% Similarity=0.045 Sum_probs=22.7
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATA 86 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
++..+...|.+.|++++|.++|+++.+.. |.|...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 35556666666666666666666666654 4444444433
No 268
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.24 E-value=0.16 Score=40.58 Aligned_cols=100 Identities=11% Similarity=0.065 Sum_probs=67.8
Q ss_pred hcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccH--HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 46 PVYASMIGILSESNRITEMKEVIDQMKGDSCECKD--SVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
..+..+...|.+.|+.+.|.+.|.++......+.. ..+..+|+...-.+++..+.....+....-..........-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46778889999999999999999998876544443 4478888888888998888888776654322211111111111
Q ss_pred -----HHHhcchHHHHHHHHHHhhcCC
Q 043204 124 -----EMVKESKLEAAHILFLRSCYGW 145 (504)
Q Consensus 124 -----~~~~~~~~~~a~~~~~~~~~~~ 145 (504)
.+...+++..|-+.|-......
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 2334688988888887776543
No 269
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.24 E-value=1.1 Score=34.88 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=31.5
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 186 RESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIV-IYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
...|...+. +++.+..++|+.-|..+ .+.|..--.. ..........+.|+...|...|+++-..
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~l----ektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDL----EKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHH----HhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 344544444 45566666666666666 4444331111 1111223344556666666666665543
No 270
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.13 E-value=0.99 Score=34.10 Aligned_cols=59 Identities=17% Similarity=0.075 Sum_probs=27.6
Q ss_pred HhcCChhHHHHHHHHhhhCCCCc--cHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcc
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVN--WTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKS 149 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (504)
.+.|++++|.+.|+.+..+-+.. ...+-..|+.+|.+.+++++|...+++...-.+.+|
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 34456666666666555432111 112333444455555555555555555544433333
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.04 E-value=0.79 Score=36.70 Aligned_cols=97 Identities=10% Similarity=0.050 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcch------HH
Q 043204 81 SVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNW--TQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSR------IQ 152 (504)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~ 152 (504)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+.........| ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3478889999999999999999999988655443 356778899999999999988888776543222112 22
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhhh
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQEMDF 179 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 179 (504)
+|..|. +...+++..|-+.|-....
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccCc
Confidence 233332 3456899999988877654
No 272
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.88 E-value=1.4 Score=34.12 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=9.5
Q ss_pred HhhcCcHHHHHHHHHHHHh
Q 043204 413 LCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~ 431 (504)
+...|++.+|.++|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 4444555555555555444
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.71 E-value=0.62 Score=37.63 Aligned_cols=182 Identities=14% Similarity=0.029 Sum_probs=98.7
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHH-HHHHHHHHHhcCCh
Q 043204 18 IKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSV-FATAIRTYARAGQL 96 (504)
Q Consensus 18 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 96 (504)
|-..|-+.-|.-=|.+.+...|. -+.+||.|.-.+...|+++.|.+.|+...+.+ +....+ .|.-|..| -.|++
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~---m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~Y-Y~gR~ 149 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY-YGGRY 149 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCC---cHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeee-ecCch
Confidence 44556666666677777777665 56778888888888999999999999998887 333333 34434333 45788
Q ss_pred hHHHHHHHHhhhCCCC-ccHHHHHHHHHHHHhcchHHHHHHH-HHHhhcCCCCcchHHHHHHHHH-HHhhcCCHHHHHHH
Q 043204 97 NEAVSLFKNLSQFNCV-NWTQSFNTLLKEMVKESKLEAAHIL-FLRSCYGWEVKSRIQSLNLLMD-VLCQCRRSDLALHV 173 (504)
Q Consensus 97 ~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~ 173 (504)
+-|.+-|...-+.+.. |-...|.-+.. ..-+..+|..- .++.... |..-|...|. .|.-.=..+.+.+-
T Consensus 150 ~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~-----d~e~WG~~iV~~yLgkiS~e~l~~~ 221 (297)
T COG4785 150 KLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS-----DKEQWGWNIVEFYLGKISEETLMER 221 (297)
T ss_pred HhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc-----cHhhhhHHHHHHHHhhccHHHHHHH
Confidence 8887777666555432 22222222221 22334444433 3333211 2222222222 22211112222222
Q ss_pred HHHhhhCCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 174 FQEMDFQGC---YPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 174 ~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
...-...+- +.=..||--|.+.+...|+.++|..+|+-.
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 111111100 112357778888888888888888888877
No 274
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.55 E-value=1.6 Score=35.44 Aligned_cols=182 Identities=12% Similarity=-0.008 Sum_probs=101.4
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhc
Q 043204 64 MKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCY 143 (504)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (504)
|.--|.+..... |.-+.+||-+.--+...|+++.|.+.|+...+.++.-+-...|.-| ++.-.|++.-|.+-|.+.-.
T Consensus 84 AR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 84 ARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHh
Confidence 333344444333 4445679999888999999999999999999887544322222222 23346888888887777665
Q ss_pred CCCCcchHHHHHHHHHHHhhcCCHHHHHHHH-HHhhhCCCCCCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhhCCC
Q 043204 144 GWEVKSRIQSLNLLMDVLCQCRRSDLALHVF-QEMDFQGCYPDRESYHILMKGLC-NDRRLNEATHLLYSMFWRISQKGS 221 (504)
Q Consensus 144 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~ 221 (504)
..+-.|--..|--+. -..-++.+|..-+ ++... .|..-|...|-.+. ..=..+.+.+-...--+. ...--
T Consensus 162 ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~-n~~~A 233 (297)
T COG4785 162 DDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEETLMERLKADATD-NTSLA 233 (297)
T ss_pred cCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccc-hHHHH
Confidence 544444333332222 2334666666544 33332 24344443333221 111111111111000000 00000
Q ss_pred CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 043204 222 GEDIVIYRTLLFALCDQGKIQDAMQILEKILRKG 255 (504)
Q Consensus 222 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 255 (504)
+.=..||--+..-+...|+.++|..+|+-.+..+
T Consensus 234 e~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 234 EHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1135688899999999999999999999988764
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.48 E-value=0.49 Score=40.53 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHh-----cCcCCCcchH
Q 043204 367 VRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLI-----RSYWPCVETY 441 (504)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 441 (504)
..++..++..+...|+.+.+...++++... -+-+...|..++.+|.+.|+...|...|+.+.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 445666666666677777777777776653 233556667777777777777777777666654 2555555554
Q ss_pred HHHHHH
Q 043204 442 NVLIRG 447 (504)
Q Consensus 442 ~~l~~~ 447 (504)
..+...
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444433
No 276
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=5.5 Score=39.13 Aligned_cols=156 Identities=14% Similarity=0.065 Sum_probs=91.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 043204 14 LSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARA 93 (504)
Q Consensus 14 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
-+..+.+.+.+++|+..-+......|... -...+...|+.+...|++++|-...-.|.. .+..-|..-+..+...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~-i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFV-IKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccc-hHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 36778888899999987765544322211 344678889999999999999998888874 3566677777777776
Q ss_pred CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhc--------CCCCcc-------hHHHHHHHH
Q 043204 94 GQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCY--------GWEVKS-------RIQSLNLLM 158 (504)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~-------~~~~~~~l~ 158 (504)
++.... +.-+.......+...|..++-.+.. .+...-.++...-.. ....+| +...-..|+
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 655443 3334444444556677777776665 322222222211100 000000 112223466
Q ss_pred HHHhhcCCHHHHHHHHHHhh
Q 043204 159 DVLCQCRRSDLALHVFQEMD 178 (504)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~ 178 (504)
..|...++++.|..++-...
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 66777777777777766655
No 277
>PRK11906 transcriptional regulator; Provisional
Probab=94.36 E-value=1 Score=41.38 Aligned_cols=114 Identities=15% Similarity=0.087 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHH
Q 043204 23 SPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSL 102 (504)
Q Consensus 23 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 102 (504)
+..+|.++-+++.+.+|. |..+...+..++.-.++++.|..+|++....+ |....+|....-.+.-.|+.++|.+.
T Consensus 319 ~~~~a~~~A~rAveld~~---Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 319 AAQKALELLDYVSDITTV---DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456788899999999887 88888888888888889999999999999887 55566777777777888999999999
Q ss_pred HHHhhhCCCCcc-HHHHHHHHHHHHhcchHHHHHHHHHHh
Q 043204 103 FKNLSQFNCVNW-TQSFNTLLKEMVKESKLEAAHILFLRS 141 (504)
Q Consensus 103 ~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 141 (504)
+++..+.++.-- ..+....++.|+. ..++.|.++|-+-
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 433 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYKE 433 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhhc
Confidence 999766653221 2222222334433 4567777766543
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.34 E-value=0.45 Score=40.76 Aligned_cols=70 Identities=10% Similarity=0.198 Sum_probs=45.0
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhh-----CCCCccHHHH
Q 043204 48 YASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQ-----FNCVNWTQSF 118 (504)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 118 (504)
+..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 4445556666667777777777777666 66666677777777777777777777766543 4555554433
No 279
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.99 E-value=0.0044 Score=47.90 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=48.5
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc
Q 043204 50 SMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES 129 (504)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (504)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++.... ..+ ..++..+.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd~-----~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YDL-----DKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S-C-----THHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cCH-----HHHHHHHHhcc
Confidence 34556666666777777777766555345566667777777776666666666652211 122 35555666666
Q ss_pred hHHHHHHHHHHh
Q 043204 130 KLEAAHILFLRS 141 (504)
Q Consensus 130 ~~~~a~~~~~~~ 141 (504)
-+++|.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 666665555544
No 280
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.78 E-value=6.4 Score=37.44 Aligned_cols=132 Identities=8% Similarity=-0.006 Sum_probs=88.3
Q ss_pred CCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHH
Q 043204 9 LTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIR 88 (504)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
..|..|+.--....+.+.+..+++.++..+|- --.-|......=.+.|..+.+.++|++.... ++.....|.....
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl---~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPL---CYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCcc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 34555655555555667778888888887663 2334566666667778888999999888764 3666667766665
Q ss_pred HHH-hcCChhHHHHHHHHhhhCC-C-CccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC
Q 043204 89 TYA-RAGQLNEAVSLFKNLSQFN-C-VNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG 144 (504)
Q Consensus 89 ~~~-~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
.+. ..|+.+.....|+...... . -.+...|...|..-...+++.....+++++.+.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 544 4567777778888766421 1 122345667777777778888888888887654
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.66 E-value=3.8 Score=34.47 Aligned_cols=222 Identities=21% Similarity=0.092 Sum_probs=94.7
Q ss_pred cCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChhHHH
Q 043204 238 QGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIR-GGIPSLASYSAMAIDLYNEGRIVEGD 316 (504)
Q Consensus 238 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~ 316 (504)
.+....+...+......................+...++...+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555665555554322111233333344444455555555555544432 11122333333344444445555555
Q ss_pred HHHHHHHHCCCCcchhhHHHHHH-HHhcCCCHHHHHHHHHHHHhcCCC--CccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043204 317 KVLDEMRTKGFWPSLVMYEAKLA-ALFKDGMVDEALEVIEEEMVKGTF--VPTVRVYNILLKGLCDAGNSAVAVMYLKKM 393 (504)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 393 (504)
..+.........+ ......... .+...|+++.+...+.+... ... ......+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 5555555433221 111111222 45555555555555555322 110 012222222233344455555555555555
Q ss_pred HHhcCCCC-chhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCC-cchHHHHHHHHHccCCHHHHHHHHHHHH
Q 043204 394 SKQVGCVA-NGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPC-VETYNVLIRGLCSIGKQYEAVMWLEEMI 465 (504)
Q Consensus 394 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (504)
... ... ....+..+...+...++++.|...+....... |+ ...+..+...+...|..+.+...+.+..
T Consensus 194 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 194 LKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred Hhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 542 111 23444445555555555555555555555432 22 2223333333334444555555555554
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.62 E-value=0.18 Score=27.63 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=19.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH
Q 043204 440 TYNVLIRGLCSIGKQYEAVMWLEEMI 465 (504)
Q Consensus 440 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (504)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677888888888888888888855
No 283
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.46 E-value=2.6 Score=32.02 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=10.5
Q ss_pred HhhcCcHHHHHHHHHHHHhc
Q 043204 413 LCRDGRFLEASRVLEEMLIR 432 (504)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~ 432 (504)
+...|++.+|.++|++..+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 44455555555555555543
No 284
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.44 E-value=5.1 Score=35.27 Aligned_cols=130 Identities=12% Similarity=0.175 Sum_probs=72.1
Q ss_pred hHHHHHHHHhhcCCCCccHHHHHHHHHHHHh--cC----ChhHHHHHHHHhhhCCCC---ccHHHHHHHHHHHHhcchH-
Q 043204 62 TEMKEVIDQMKGDSCECKDSVFATAIRTYAR--AG----QLNEAVSLFKNLSQFNCV---NWTQSFNTLLKEMVKESKL- 131 (504)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~- 131 (504)
++...+++.|.+.|+.-+..+|.+..-.... .. ....|..+|+.|++..+- ++...+..++.. ..+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556777888888888777776554433333 22 345688888888876532 223344444433 23332
Q ss_pred ---HHHHHHHHHhhcCCCCcc--hHHHHHHHHHHHhhcCC--HHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043204 132 ---EAAHILFLRSCYGWEVKS--RIQSLNLLMDVLCQCRR--SDLALHVFQEMDFQGCYPDRESYHILMK 194 (504)
Q Consensus 132 ---~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 194 (504)
+.++.+|+.+... +... +......++.......+ ..++.++++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4556666666652 2222 22333333333222222 3467778888888888777766665543
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.16 E-value=5.6 Score=34.99 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=35.9
Q ss_pred HhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh--cC----chhHHHHHHHHHHHcC
Q 043204 197 CNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCD--QG----KIQDAMQILEKILRKG 255 (504)
Q Consensus 197 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~ 255 (504)
.+..+++++.+-+-.....+.+.|...+..+|-+....... .. ...+|..+|+.|.+..
T Consensus 69 ~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 69 ISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 34444666665555555555888888887766653333322 22 2467788888888764
No 286
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.97 E-value=9.8 Score=37.22 Aligned_cols=186 Identities=12% Similarity=0.001 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHH-HhhcCCHHHHHHHHHHhhh-------CCCCCCHhhHHHHHHHHHhcC--
Q 043204 131 LEAAHILFLRSCYGWEVKSRIQSLNLLMDV-LCQCRRSDLALHVFQEMDF-------QGCYPDRESYHILMKGLCNDR-- 200 (504)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~~-- 200 (504)
...|..+++.........+-...-.....+ +....|.+.|..+|+.+.+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 456677776665543222211111111222 4456678888888877765 44 3334555555555532
Q ss_pred ---CHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh-cCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCC
Q 043204 201 ---RLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCD-QGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGED 276 (504)
Q Consensus 201 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (504)
+.+.|..++.+. ...|.. +....-..+.-... ..+...|.++|....+.|..+..............-..+
T Consensus 305 ~~~d~~~A~~~~~~a----A~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKA----AELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHH----HhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCC
Confidence 556677777666 444432 33222222221111 134567777777777666432211111111122233445
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 043204 277 IEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKG 326 (504)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (504)
...|..+++...+.| .|....-...+..+.. ++.+.+...+..+.+.|
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 566666666666555 2221211222222222 45555555554444443
No 287
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.88 E-value=0.0082 Score=46.37 Aligned_cols=85 Identities=7% Similarity=0.066 Sum_probs=59.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 043204 156 LLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFAL 235 (504)
Q Consensus 156 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (504)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++.. .. .-...++..|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~------~~-----yd~~~~~~~c 80 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS------NN-----YDLDKALRLC 80 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS------SS-----S-CTHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc------cc-----cCHHHHHHHH
Confidence 366777788888888888888887665567788888899999888777777765422 11 2334566777
Q ss_pred HhcCchhHHHHHHHHH
Q 043204 236 CDQGKIQDAMQILEKI 251 (504)
Q Consensus 236 ~~~g~~~~a~~~~~~~ 251 (504)
.+.|.++.+.-++..+
T Consensus 81 ~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 81 EKHGLYEEAVYLYSKL 96 (143)
T ss_dssp HTTTSHHHHHHHHHCC
T ss_pred HhcchHHHHHHHHHHc
Confidence 7778888887777764
No 288
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.79 E-value=3 Score=30.87 Aligned_cols=140 Identities=10% Similarity=0.183 Sum_probs=73.0
Q ss_pred HhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHH
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLA 170 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 170 (504)
.-.|..++..++..+..... +..-+|-+|--....-+-+-..++++.+-.-.++. .+|+....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 34566777777776665432 12333444444444445555555555554332221 22333333
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 043204 171 LHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEK 250 (504)
Q Consensus 171 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 250 (504)
...+-.+- .+.......+......|+-++-.+++..+ .+ .-.+++...-.+..+|.+.|+..++.+++.+
T Consensus 76 i~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l----~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 76 IECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNEL----KK-NEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH----------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHH----hh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 33333222 13344555667777788888777777776 32 3455677777788888888888888888888
Q ss_pred HHHcCCC
Q 043204 251 ILRKGLK 257 (504)
Q Consensus 251 ~~~~~~~ 257 (504)
..+.|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 8877753
No 289
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.77 E-value=6.3 Score=34.51 Aligned_cols=169 Identities=12% Similarity=-0.014 Sum_probs=115.9
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCC--cchHHHHHHHHHHHhhcCCH
Q 043204 90 YARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEV--KSRIQSLNLLMDVLCQCRRS 167 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 167 (504)
....|+..+|-..++++.+. .+.|..++..-=+++.-.|+.+.-...++++....+. +-.+.......-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34568888888888888874 3556667777778888999999988888888765322 22233334445566788999
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHH
Q 043204 168 DLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQI 247 (504)
Q Consensus 168 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 247 (504)
++|++.-++..+-+ +.|...-.++...+-..|++.++.++..+-...-. .+.-.-..-|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999988765 34667777788888889999999988765421112 22222233444455567788999999999
Q ss_pred HHHHHHcCCCCCcc
Q 043204 248 LEKILRKGLKAPKS 261 (504)
Q Consensus 248 ~~~~~~~~~~~~~~ 261 (504)
|+.-+-.....++.
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 98754444443444
No 290
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.63 E-value=5.6 Score=33.58 Aligned_cols=201 Identities=11% Similarity=0.128 Sum_probs=126.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCc--chhcHHHHHHHHhccCChhHHHHHHHHhhcC---CC--CccHHHHHHHHHHHHhc
Q 043204 21 QKSPLTALKIFKEAKEKYPNYRH--NGPVYASMIGILSESNRITEMKEVIDQMKGD---SC--ECKDSVFATAIRTYARA 93 (504)
Q Consensus 21 ~~~~~~A~~~~~~~~~~~p~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~ 93 (504)
..++++|+.-|++.++..|. +. ...+.-.++....+.+++++..+.+.++... .+ .-+....|+++......
T Consensus 40 e~~p~~Al~sF~kVlelEgE-KgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGE-KGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred ccCHHHHHHHHHHHHhcccc-cchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 44899999999999987431 11 1234567788899999999999888887631 11 12334567777666665
Q ss_pred CChhHHHHHHHHhh----h-CCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC---CCCcch-------HHHHHHHH
Q 043204 94 GQLNEAVSLFKNLS----Q-FNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG---WEVKSR-------IQSLNLLM 158 (504)
Q Consensus 94 ~~~~~a~~~~~~~~----~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-------~~~~~~l~ 158 (504)
.+.+...+.|+.-. + .+-..+-.|-..|...|...+++.+..++++++... ..-..| ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 66555555554322 1 233445555578888888888888888888776431 111111 34567777
Q ss_pred HHHhhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHH-----HhcCCHHHHHHHHHHHHHHHhhCCCCc
Q 043204 159 DVLCQCRRSDLALHVFQEMDFQ-GCYPDRESYHILMKGL-----CNDRRLNEATHLLYSMFWRISQKGSGE 223 (504)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~ 223 (504)
..|....+-.+...++++...- .--|.+.... +|+-| .+.|++++|..-|-+.+....+.|.+.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspR 268 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPR 268 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcc
Confidence 8888888878888888876542 1234443333 44444 467888888777666665545555443
No 291
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.61 E-value=5.5 Score=33.43 Aligned_cols=166 Identities=14% Similarity=-0.009 Sum_probs=74.5
Q ss_pred hcHHHHHHHHhccCChhHHHHHHHHhhcC-CCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH-
Q 043204 46 PVYASMIGILSESNRITEMKEVIDQMKGD-SCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK- 123 (504)
Q Consensus 46 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~- 123 (504)
..+......+...+++..+...+...... ........+......+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 44445555555555555555555555431 1133334445555555555555566666655554332221 11111122
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCC-cchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEV-KSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRL 202 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 202 (504)
.+...|+++.|...+.+....... ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 455555555555555555321100 1112222222233444555555555555555431110234444444445555555
Q ss_pred HHHHHHHHHH
Q 043204 203 NEATHLLYSM 212 (504)
Q Consensus 203 ~~a~~~~~~~ 212 (504)
+.+...+...
T Consensus 219 ~~a~~~~~~~ 228 (291)
T COG0457 219 EEALEYYEKA 228 (291)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.48 E-value=0.35 Score=26.46 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHH
Q 043204 227 IYRTLLFALCDQGKIQDAMQILEKIL 252 (504)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 252 (504)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677888888888888888888754
No 293
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.07 E-value=10 Score=35.39 Aligned_cols=176 Identities=7% Similarity=-0.042 Sum_probs=119.2
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
.-.++..+..+..++-...+..+++.-. -+...|..++.+|.+. ..+.-..+++++.+.. -.|+..-..|...|
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~----e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~~y 142 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG----ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELADKY 142 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHHHH
Confidence 4456777888888888888888888753 2677888999999888 5677888899888876 33444445555555
Q ss_pred HhcCChhHHHHHHHHhhhCCCCcc-----HHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcC
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVNW-----TQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCR 165 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 165 (504)
-+ ++-+.+...|..+..+-++.. ...|..+... -..+.+....+..++....+..--...+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 44 888888888887765433211 1123332221 135667777777777766666555666777778899999
Q ss_pred CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 043204 166 RSDLALHVFQEMDFQGCYPDRESYHILMKGL 196 (504)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 196 (504)
++++|++++..+.+.+- .|...-..++.-+
T Consensus 220 N~~eai~Ilk~il~~d~-k~~~ar~~~i~~l 249 (711)
T COG1747 220 NWTEAIRILKHILEHDE-KDVWARKEIIENL 249 (711)
T ss_pred CHHHHHHHHHHHhhhcc-hhhhHHHHHHHHH
Confidence 99999999998887652 3555555555543
No 294
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.01 E-value=3.8 Score=38.86 Aligned_cols=131 Identities=14% Similarity=0.066 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHh
Q 043204 83 FATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLC 162 (504)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (504)
.+.+++.+.++|..++|+++- ..|+ .-.....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 617 rt~va~Fle~~g~~e~AL~~s-------~D~d-----~rFelal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS-------TDPD-----QRFELALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC-------CChh-----hhhhhhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHh
Confidence 455556666666666665441 1121 22344456677777777665543 3456777777777
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchh
Q 043204 163 QCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQ 242 (504)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 242 (504)
..+++..|.+.|.+... |..|+-.+...|+.+....+-... .+.|. .|...-+|...|+++
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~----~~~g~------~N~AF~~~~l~g~~~ 738 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLA----KKQGK------NNLAFLAYFLSGDYE 738 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHH----Hhhcc------cchHHHHHHHcCCHH
Confidence 77777777777766553 445666666666665544444433 33332 233344566677777
Q ss_pred HHHHHHHHH
Q 043204 243 DAMQILEKI 251 (504)
Q Consensus 243 ~a~~~~~~~ 251 (504)
++.+++..-
T Consensus 739 ~C~~lLi~t 747 (794)
T KOG0276|consen 739 ECLELLIST 747 (794)
T ss_pred HHHHHHHhc
Confidence 777776543
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.97 E-value=5 Score=31.53 Aligned_cols=128 Identities=13% Similarity=0.125 Sum_probs=62.0
Q ss_pred HHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc--hHHHHHHHHHHhhc
Q 043204 66 EVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES--KLEAAHILFLRSCY 143 (504)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~ 143 (504)
+.++.+.+.+++|+...+..+++.+.+.|.+.....+ .+.++.+|.......+-.+.... -..-+..++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 4455555666677777777777777777765444333 34455555443333332222111 12233334433321
Q ss_pred CCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 043204 144 GWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLY 210 (504)
Q Consensus 144 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 210 (504)
.+..++..+...|++-+|.++.+..... +......++.+..+.+|...-..+++
T Consensus 91 ---------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 91 ---------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred ---------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 2244556666667777777666654321 11222334444444444443333333
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.90 E-value=0.16 Score=27.40 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=19.5
Q ss_pred HHhhcCCCCccHHHHHHHHHHHHhcCChhHHH
Q 043204 69 DQMKGDSCECKDSVFATAIRTYARAGQLNEAV 100 (504)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (504)
++.++.. |-+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444 556666777777777777777664
No 297
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.74 E-value=11 Score=35.08 Aligned_cols=73 Identities=15% Similarity=0.024 Sum_probs=45.0
Q ss_pred CCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHH-hccCChhHHHHHHHHhhcCCCCccHHHH
Q 043204 7 RLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGIL-SESNRITEMKEVIDQMKGDSCECKDSVF 83 (504)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (504)
|+..|..-+..+.+.+.+.+.-.+|..|+..+|. ++..|-.-..-. -.+.+++.|..+|.+..+.. +.++..|
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~---~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw 177 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN---NPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLW 177 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC---CchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHH
Confidence 5555666666666666678888888888888765 444443333222 23334778888887777665 4444444
No 298
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.73 E-value=15 Score=36.50 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=21.8
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHh
Q 043204 50 SMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYAR 92 (504)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (504)
++|-.|.|+|++++|.++.......- ......+...+..|..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~-~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQF-QKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS--TTTTHHHHHHHHCTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHh
Confidence 55666667777777776664443322 3333445555555544
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.72 E-value=0.4 Score=25.70 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=24.6
Q ss_pred CchHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043204 10 TPTYLSQIIKKQKSPLTALKIFKEAKEKYPN 40 (504)
Q Consensus 10 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 40 (504)
+|..+...+...|++++|+..|+++++.+|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4667788888999999999999999888653
No 300
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.68 E-value=0.23 Score=26.35 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=23.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKYPN 40 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 40 (504)
.+..++.+.|++++|.+.|+++.+.+|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3567788899999999999999998875
No 301
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.24 E-value=11 Score=34.05 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=35.1
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhc
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKG 73 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 73 (504)
+.-+...|..+|+++.|++.|.++..-=-..+.....|-.+|..-...|+|........+..+
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 344566667777777777777664331111222344455666666666666666555555443
No 302
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.13 E-value=3.9 Score=28.65 Aligned_cols=47 Identities=13% Similarity=0.038 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC
Q 043204 98 EAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG 144 (504)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
+..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+.+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555566666666666666666666666666666655544
No 303
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.09 E-value=8.2 Score=32.25 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=52.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHhhhC----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHH
Q 043204 154 LNLLMDVLCQCRRSDLALHVFQEMDFQ----GCYPDR-ESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIY 228 (504)
Q Consensus 154 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 228 (504)
+...-+.+.+...+++|-..|.+-... .-.++. ..|...|-.+....++..|...++.-... ....-.-+..+.
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi-p~f~~sed~r~l 231 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI-PAFLKSEDSRSL 231 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC-ccccChHHHHHH
Confidence 344445566666666665555433211 111222 33555566677778899999988764100 111122356677
Q ss_pred HHHHHHHHhcCchhHHHHHHH
Q 043204 229 RTLLFALCDQGKIQDAMQILE 249 (504)
Q Consensus 229 ~~l~~~~~~~g~~~~a~~~~~ 249 (504)
..|+.+|- .||.+++.+++.
T Consensus 232 enLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHHc
Confidence 78888774 467776666553
No 304
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.04 E-value=17 Score=35.70 Aligned_cols=176 Identities=14% Similarity=0.046 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHhcCCCCCcchhcHHHHHHH-----HhccCChhHHHHHHHHhhc-------CCCCccHHHHHHHHHHHH
Q 043204 24 PLTALKIFKEAKEKYPNYRHNGPVYASMIGI-----LSESNRITEMKEVIDQMKG-------DSCECKDSVFATAIRTYA 91 (504)
Q Consensus 24 ~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~ 91 (504)
...|..+++..... | +......+..+ +...++.+.|..+|+...+ .+ ++....-+..+|.
T Consensus 228 ~~~a~~~~~~~a~~--g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--G---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYL 299 (552)
T ss_pred hhHHHHHHHHHHhh--c---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHh
Confidence 46788888888877 4 55544444433 3355788899999988876 44 3334556666666
Q ss_pred hcC-----ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHh-cchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHH--hh
Q 043204 92 RAG-----QLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVK-ESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVL--CQ 163 (504)
Q Consensus 92 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~ 163 (504)
+.. +.+.|..+|...-+.|.+ +...+...+..... ..+...|.++|....... . ++..-+-+++-.. .-
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~-~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-H-ILAIYRLALCYELGLGV 376 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-C-hHHHHHHHHHHHhCCCc
Confidence 643 566788888887777743 33322222222222 245678888888776542 1 1222221111111 12
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 164 CRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
..+.+.|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYL 423 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHH
Confidence 347778888888888776 3332222223333344 6666665555554
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.98 E-value=0.51 Score=25.15 Aligned_cols=30 Identities=30% Similarity=0.264 Sum_probs=23.3
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPN 40 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 40 (504)
+..+...+...|++++|++.|+++.+..|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 456777888899999999999998887664
No 306
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.91 E-value=3.6 Score=32.93 Aligned_cols=129 Identities=6% Similarity=0.006 Sum_probs=87.9
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHH----HHHHH
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDS----VFATA 86 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l 86 (504)
|..++.... .+.+ +.....+.+...+|.-.--...-..+...+...|++++|..-++...... .|.. +-..|
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t--~De~lk~l~~lRL 132 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT--KDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc--hhHHHHHHHHHHH
Confidence 444555444 3444 66667777777765522222233455578899999999999999887542 2222 23445
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCC
Q 043204 87 IRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGW 145 (504)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 145 (504)
.+.....|.++.|+.+++.....+..+- ....-.+.+...|+-++|..-|+......
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~--~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAI--VAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHH--HHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 6777889999999999998877664432 23445678899999999999999988764
No 307
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.90 E-value=2.1 Score=29.61 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=32.7
Q ss_pred ChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 043204 60 RITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLS 107 (504)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 107 (504)
+.-++.+-+..+...++.|++.+..+.+++|.+.+|+..|.++|+-++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334556666666666667777777777777777777777777777665
No 308
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.65 E-value=9 Score=32.00 Aligned_cols=26 Identities=4% Similarity=-0.019 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhh
Q 043204 153 SLNLLMDVLCQCRRSDLALHVFQEMD 178 (504)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (504)
.|.--..+|....++++|...+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34444556666777777777666655
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.57 E-value=2.2 Score=29.52 Aligned_cols=50 Identities=12% Similarity=-0.003 Sum_probs=39.9
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC
Q 043204 95 QLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG 144 (504)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
|.-++.+-++.+...+..|++.+..+.+++|-+.+++..|.++|+..+.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34456677777778888888888888888888888888888888877644
No 310
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=90.56 E-value=12 Score=33.48 Aligned_cols=92 Identities=7% Similarity=0.038 Sum_probs=57.6
Q ss_pred HHHHHHhcCCCCCcchhcHHHHHHHHhcc---CC---------hhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChh
Q 043204 30 IFKEAKEKYPNYRHNGPVYASMIGILSES---NR---------ITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLN 97 (504)
Q Consensus 30 ~~~~~~~~~p~~~~~~~~~~~l~~~~~~~---~~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (504)
-|++..+.+|+ |+.+|-.++..--.. +. .+.-+.++++..+.+ +.+...+...+..+.+..+.+
T Consensus 7 el~~~v~~~P~---di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 7 ELNRRVRENPH---DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred HHHHHHHhCcc---cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHH
Confidence 45566666777 888888888533221 11 345566677777665 556666777777777777777
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 043204 98 EAVSLFKNLSQFNCVNWTQSFNTLLKEMV 126 (504)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (504)
...+.++.+...... +...|...|+...
T Consensus 83 ~l~~~we~~l~~~~~-~~~LW~~yL~~~q 110 (321)
T PF08424_consen 83 KLAKKWEELLFKNPG-SPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHHHHHHCCC-ChHHHHHHHHHHH
Confidence 777777777765422 3445555555443
No 311
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.39 E-value=2.2 Score=29.85 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=44.6
Q ss_pred ChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 60 RITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
+.-+..+-+..+...++.|++.+..+.+++|.+.+++..|.++|+-++..-- +....|..++.
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence 3347777888888888899999999999999999999999999998875422 22226665554
No 312
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.23 E-value=18 Score=34.67 Aligned_cols=416 Identities=11% Similarity=-0.007 Sum_probs=225.7
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHH-HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDS-VFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLL 122 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 122 (504)
+...|..++.---...+.+.+..++..+...- |-.. -|......=.+.|..+.+.++|++-.. +++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 44567777765555556677778888887653 4443 466666666788999999999999876 4456666666666
Q ss_pred HHHH-hcchHHHHHHHHHHhhcCCCCcc-hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH---
Q 043204 123 KEMV-KESKLEAAHILFLRSCYGWEVKS-RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLC--- 197 (504)
Q Consensus 123 ~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~--- 197 (504)
..+. ..|+.+.....|++...-.|..- +...|...|..-..++++.....+++++++. ....|+....-|.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHH
Confidence 6554 44777888888888876444322 3446777777778889999999999999874 3334444443332
Q ss_pred hc------CCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh-cCchhHHHHHHHHHHHcCCCCCcchhhhhhccc
Q 043204 198 ND------RRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCD-QGKIQDAMQILEKILRKGLKAPKSRRHRIDLCP 270 (504)
Q Consensus 198 ~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (504)
+. ...+++.++-.....+....-..+.......-+.--.. .+..+.+.....+..... -..
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~------------~~~ 264 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIH------------EKV 264 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHH------------HHH
Confidence 22 12233333322221000000000011111111111000 111122221111111100 000
Q ss_pred cCCCCChHHHHHHHHHHHHc---CCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhc
Q 043204 271 CNDGEDIEGAKSLINEALIR---GGI----PSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFK 343 (504)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~---~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (504)
+............++..+.+ .+. ++..+|..-+.--...|+.+.+.-.|+...-.- ..-...|--.+.-...
T Consensus 265 ~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~ 343 (577)
T KOG1258|consen 265 YQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMES 343 (577)
T ss_pred HHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHH
Confidence 01111111122222222211 011 245667777777777899999988888876531 1122333333444444
Q ss_pred CCCHHHHHHHHHHHHhcC-CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchh-hHHHHHHHHhhcCcHHH
Q 043204 344 DGMVDEALEVIEEEMVKG-TFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGE-TYGILVDGLCRDGRFLE 421 (504)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 421 (504)
.|+.+-|..++....+-. .-.|....+.+.+ +-..|++..|..+++.+.+. . |+.. .-..-+....+.|+.+.
T Consensus 344 ~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~ 418 (577)
T KOG1258|consen 344 SGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLED 418 (577)
T ss_pred cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhh
Confidence 588888887776422211 1123333333333 44678999999999999886 3 5543 22233455667888888
Q ss_pred HHH---HHHHHHhcCcCCCcchHHHHHHHH-----HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 043204 422 ASR---VLEEMLIRSYWPCVETYNVLIRGL-----CSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNT 487 (504)
Q Consensus 422 A~~---~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 487 (504)
+.. ++....+. .-+....+.+.--+ .-.++.+.|..++.++.+. ..++...|..++.-.....
T Consensus 419 ~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 419 ANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 873 33333221 23333444443333 3468999999999999965 5667788888887544443
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.20 E-value=0.41 Score=25.65 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=15.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 440 TYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 440 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
+|..+..+|...|++++|++.|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 345555556666666666666666553
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.14 E-value=1.6 Score=37.57 Aligned_cols=95 Identities=11% Similarity=0.184 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHhhcCCC--CcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043204 117 SFNTLLKEMVKESKLEAAHILFLRSCYGWE--VKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMK 194 (504)
Q Consensus 117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 194 (504)
+...++..-....+++.++..+-++..... ..|+... .++++.+ -.-++++++.++..-.+.|+-||.++++.+|.
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D 143 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMD 143 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHH
Confidence 334444444445566666666655554321 1122111 1223322 34467788888888888899999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 043204 195 GLCNDRRLNEATHLLYSMF 213 (504)
Q Consensus 195 ~~~~~~~~~~a~~~~~~~~ 213 (504)
.+.+.+++.+|.++...|.
T Consensus 144 ~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 144 SFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHhcccHHHHHHHHHHHH
Confidence 9999999998888877773
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.04 E-value=4.4 Score=32.75 Aligned_cols=83 Identities=14% Similarity=0.045 Sum_probs=58.7
Q ss_pred HHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC
Q 043204 160 VLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQG 239 (504)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 239 (504)
.+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++.+++...++. ...+-.+|+..+.+|+..|.+.|
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l-~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALEL-SNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHhc
Confidence 3445554 677888888877765555555555655554 67888888888887543 23344678889999999999999
Q ss_pred chhHHH
Q 043204 240 KIQDAM 245 (504)
Q Consensus 240 ~~~~a~ 245 (504)
+++.|.
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 888774
No 316
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.91 E-value=15 Score=33.44 Aligned_cols=65 Identities=18% Similarity=0.112 Sum_probs=34.2
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCc---cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043204 330 SLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVP---TVRVYNILLKGLCDAGNSAVAVMYLKKMSK 395 (504)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 395 (504)
...+|..++..+.+.|.++.|...+.. +...+... .+.....-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~-~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNR-LFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHH-HhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444566666666667777777666665 33221000 122222333444556666666666666555
No 317
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.52 E-value=2.6 Score=36.81 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=25.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhh
Q 043204 18 IKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMK 72 (504)
Q Consensus 18 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (504)
|.++|.+++|+..|......+|. |..++..-..+|.+..++..|..-.....
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~---NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPH---NPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCC---CccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 44455555555555555544433 44444444445555555544444443333
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.35 E-value=0.51 Score=25.15 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=14.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 441 YNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 441 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555566666666666666553
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.33 E-value=8.1 Score=29.50 Aligned_cols=53 Identities=11% Similarity=0.258 Sum_probs=35.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCC
Q 043204 20 KQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDS 75 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 75 (504)
..++++++..+++.+.-..|+ .+...++... .+...|+|.+|..+|+.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 467778888888877776654 2233444433 4567778888888888877654
No 320
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.11 E-value=9.5 Score=30.02 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=76.1
Q ss_pred HHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043204 316 DKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSK 395 (504)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 395 (504)
.++.+.+.+.+++|+...+..+++.+.+.|++.....++. .++-+|.......+-.+ .+....+.++--.|.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq-----~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ-----YHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh-----hcccCCcHHHHHHHHHh--HccChHHHHHHHHHHH
Confidence 3455666677888888888888888888888766555443 23334443333333222 2223333333333333
Q ss_pred hcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 396 QVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 396 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
+.+ ..+..++..+...|++-+|.++.+..... +......++.+....+|...-..+++-..+
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 201 13566677788888888888888765332 222334566666666666555555544443
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.05 E-value=2.9 Score=39.58 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHH
Q 043204 331 LVMYEAKLAALFKDGMVDEALEVIEE 356 (504)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (504)
..-|..|.++....+++..|.+.|.+
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHh
Confidence 34455555555555555555554443
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.94 E-value=1.5 Score=38.18 Aligned_cols=55 Identities=5% Similarity=-0.028 Sum_probs=38.6
Q ss_pred HHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 043204 53 GILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQ 108 (504)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (504)
+-|.++|.+++|+++|....... +.|+.++..-..+|.+...+..|+.-.+....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45677788888888887777665 44777777777778877777766655555443
No 323
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.83 E-value=12 Score=33.61 Aligned_cols=79 Identities=5% Similarity=0.065 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhc---CChhHHH
Q 043204 24 PLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARA---GQLNEAV 100 (504)
Q Consensus 24 ~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~ 100 (504)
.+.-+.+++++++.+|+ +...+..++..+.+..+.++..+-++.+.... +-+...|...+...... -.++...
T Consensus 47 ~E~klsilerAL~~np~---~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKHNPD---SERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 45677899999999886 88889999999999999999999999999875 55677788777766542 2455666
Q ss_pred HHHHHh
Q 043204 101 SLFKNL 106 (504)
Q Consensus 101 ~~~~~~ 106 (504)
.+|.+.
T Consensus 123 ~~y~~~ 128 (321)
T PF08424_consen 123 DVYEKC 128 (321)
T ss_pred HHHHHH
Confidence 666544
No 324
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.73 E-value=28 Score=34.84 Aligned_cols=334 Identities=11% Similarity=-0.008 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q 043204 81 SVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDV 160 (504)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (504)
..|.....+ .+.|++..+.++...+......| -..|..+.... .....++....+++.. +.+.....-...+..
T Consensus 35 ~~f~~A~~a-~~~g~~~~~~~~~~~l~d~pL~~-yl~y~~L~~~l-~~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~~ 108 (644)
T PRK11619 35 QRYQQIKQA-WDNRQMDVVEQLMPTLKDYPLYP-YLEYRQLTQDL-MNQPAVQVTNFIRANP---TLPPARSLQSRFVNE 108 (644)
T ss_pred HHHHHHHHH-HHCCCHHHHHHHHHhccCCCcHh-HHHHHHHHhcc-ccCCHHHHHHHHHHCC---CCchHHHHHHHHHHH
Confidence 334444443 45577777777777665433322 22232222211 1223454444444432 222223333444555
Q ss_pred HhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCc
Q 043204 161 LCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGK 240 (504)
Q Consensus 161 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 240 (504)
+.+.+++....+.+..- +.+...-.....+....|+.++|......+. ..|.. ....+..++..+.+.|.
T Consensus 109 La~~~~w~~~~~~~~~~-----p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW----~~g~~-~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 109 LARREDWRGLLAFSPEK-----PKPVEARCNYYYAKWATGQQQEAWQGAKELW----LTGKS-LPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHccCHHHHHHhcCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh----ccCCC-CChHHHHHHHHHHHcCC
Confidence 56667777666633111 2344444556666777777777766666552 22221 34566777777776665
Q ss_pred hhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChhHHHHHH
Q 043204 241 IQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLA-SYSAMAIDLYNEGRIVEGDKVL 319 (504)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~ 319 (504)
+.... +...+.. ....|+...|..+...+- ++.. ....++... .+...+...+
T Consensus 179 lt~~d-~w~R~~~-----------------al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~---~~p~~~~~~~ 232 (644)
T PRK11619 179 QDPLA-YLERIRL-----------------AMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQ---NDPNTVETFA 232 (644)
T ss_pred CCHHH-HHHHHHH-----------------HHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHH---HCHHHHHHHh
Confidence 44322 2222221 112234455544444331 1111 112222211 2222222222
Q ss_pred HHHHHCCCCcchhhHHHHHHHHh--cCCCHHHHHHHHHHHHhcCCCCccHH--HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043204 320 DEMRTKGFWPSLVMYEAKLAALF--KDGMVDEALEVIEEEMVKGTFVPTVR--VYNILLKGLCDAGNSAVAVMYLKKMSK 395 (504)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~ 395 (504)
.. +.|+...-..++.++. ...+.+.|..++...-......+... ++..+....+..+...++...+.....
T Consensus 233 ~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~ 307 (644)
T PRK11619 233 RT-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM 307 (644)
T ss_pred hc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 11 1122211111122221 24456788888876323433333322 334443333333325566666665443
Q ss_pred hcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHH
Q 043204 396 QVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMI 465 (504)
Q Consensus 396 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (504)
. ..+......-+....+.++++.+...+..|.... .-...-.--+.+++...|+.++|...|+++.
T Consensus 308 ~---~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 308 R---SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred c---cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2 2344445555666668888888888888875532 1122222335566677899999999998875
No 325
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.89 E-value=1.1 Score=29.57 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=26.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHH
Q 043204 20 KQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEV 67 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 67 (504)
.+++-++|+..|..++++.+...---.++..++.++...|+++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666443111123455555666666666655543
No 326
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.61 E-value=5.7 Score=32.48 Aligned_cols=57 Identities=7% Similarity=0.040 Sum_probs=29.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhh
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMK 72 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (504)
..+..+.+.++.++|+...+.-.+..|. |...-..+++.++-.|++++|..-++..-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt---da~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT---DAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc---cccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3344555555555555555555555444 44445555555555555555554444433
No 327
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.58 E-value=5.6 Score=31.99 Aligned_cols=90 Identities=9% Similarity=0.049 Sum_probs=48.2
Q ss_pred HHhccCChhHHHHHHHHhhcCCCCc----cHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc
Q 043204 54 ILSESNRITEMKEVIDQMKGDSCEC----KDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES 129 (504)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 129 (504)
-+...|++++|..-|...+..-.+. ....|..-..++++.+.++.|+.-....++.+..- ..+...-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHHHhhh
Confidence 3455666666666666665543111 11234444556666666666666666655554221 222222334566666
Q ss_pred hHHHHHHHHHHhhcC
Q 043204 130 KLEAAHILFLRSCYG 144 (504)
Q Consensus 130 ~~~~a~~~~~~~~~~ 144 (504)
+++.|+.=|.++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666676666666543
No 328
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.07 E-value=5.4 Score=34.58 Aligned_cols=105 Identities=13% Similarity=0.216 Sum_probs=70.6
Q ss_pred CCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCC---CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC
Q 043204 325 KGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGT---FVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVA 401 (504)
Q Consensus 325 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 401 (504)
.|......+...++..-....+++.+...+-+ ++... ..|+...+ ..++.+ ..-++++++.++..=..- |+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyK-lRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqY-GiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYK-LRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQY-GIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHH-HhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchh-cccc
Confidence 34455666667777766777888888887776 55431 12222221 223322 334677777777776654 8889
Q ss_pred chhhHHHHHHHHhhcCcHHHHHHHHHHHHhcC
Q 043204 402 NGETYGILVDGLCRDGRFLEASRVLEEMLIRS 433 (504)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 433 (504)
|..+++.+++.+.+.+++.+|..+...|....
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888777653
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.03 E-value=1.4 Score=25.42 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=12.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 043204 444 LIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 444 l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555554
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.01 E-value=1.9 Score=24.22 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHH
Q 043204 226 VIYRTLLFALCDQGKIQDAMQILEKILR 253 (504)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 253 (504)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887765
No 331
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.81 E-value=15 Score=29.62 Aligned_cols=131 Identities=11% Similarity=-0.003 Sum_probs=84.8
Q ss_pred hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHH-HH--HHHHHHHHhcCChhHHHHHHHHhhhCCCC--ccHHHHH
Q 043204 45 GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDS-VF--ATAIRTYARAGQLNEAVSLFKNLSQFNCV--NWTQSFN 119 (504)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 119 (504)
...|..++.... .+.+ +.....+.+.... +.+.+ ++ -.+...+...|+++.|+.-++........ ....+-.
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n-~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQAN-GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhc-cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 345666666553 3344 5555566666543 12222 22 33456788899999999999987643211 1112223
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCC
Q 043204 120 TLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQG 181 (504)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 181 (504)
.|.+.....|.+++|+..++..... +. .......-.+.+...|+-++|..-|....+.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~-~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEE-SW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccc-cH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4566778889999999999887643 12 22233455678999999999999999998875
No 332
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.73 E-value=21 Score=31.31 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=36.0
Q ss_pred HHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q 043204 119 NTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDF 179 (504)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 179 (504)
..|.-...+.|+..+|.+.|+++.+......-......|+.++....-+..+..++-+..+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444445567888888888888876544332233445566666666655555555544433
No 333
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.65 E-value=5.5 Score=32.54 Aligned_cols=79 Identities=9% Similarity=0.063 Sum_probs=60.0
Q ss_pred cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC--CCccHHHHHHHHHH
Q 043204 47 VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFN--CVNWTQSFNTLLKE 124 (504)
Q Consensus 47 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~ 124 (504)
+.+..++.+.+.++..+++...+.-.+.. |.|...-..++..++-.|++++|..-++..-+.. ..+....|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556777888899999999998887775 6677778889999999999999998887665433 33445677777765
Q ss_pred HH
Q 043204 125 MV 126 (504)
Q Consensus 125 ~~ 126 (504)
-.
T Consensus 82 ea 83 (273)
T COG4455 82 EA 83 (273)
T ss_pred HH
Confidence 43
No 334
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.60 E-value=39 Score=34.27 Aligned_cols=231 Identities=13% Similarity=0.024 Sum_probs=118.7
Q ss_pred HhhcCCHHHHHHHHHHhhhCCCCCCHh-------hHHHHHH-HHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 043204 161 LCQCRRSDLALHVFQEMDFQGCYPDRE-------SYHILMK-GLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLL 232 (504)
Q Consensus 161 ~~~~~~~~~a~~~~~~~~~~~~~p~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 232 (504)
.....++.+|..++.+....-..|+.. .++.|-. .....|+++.+.++-+.....+...-..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678889988888776542222221 2333322 23467889999999888755444444555677778888
Q ss_pred HHHHhcCchhHHHHHHHHHHHcCCCCCc----chhhhhhccccCCCCChHHHH--HHHHHHHHc---CCC---CChhhHH
Q 043204 233 FALCDQGKIQDAMQILEKILRKGLKAPK----SRRHRIDLCPCNDGEDIEGAK--SLINEALIR---GGI---PSLASYS 300 (504)
Q Consensus 233 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~---~~~---~~~~~~~ 300 (504)
.+..-.|++++|..+..+..+....-+. ..........+...|+...+. ..+...... ... +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888899999999888877664211111 111111223344555333222 222222211 000 1122333
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHHHCCCCcchhhH--HHHHHHHhcCCCHHHHHHHHHHHHhcCCCCc----cHHHHHHH
Q 043204 301 AMAIDLYNE-GRIVEGDKVLDEMRTKGFWPSLVMY--EAKLAALFKDGMVDEALEVIEEEMVKGTFVP----TVRVYNIL 373 (504)
Q Consensus 301 ~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l 373 (504)
.++.++.+. +...++..-++........|-.... ..|+......|+.++|...+++ +......+ +..+-...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~-~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDE-LERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhcCCCCCchHHHHHHH
Confidence 344444432 2222222222222222222222222 2567777888999999888776 44333222 22222222
Q ss_pred HH--HHHhcCChHHHHHHHHH
Q 043204 374 LK--GLCDAGNSAVAVMYLKK 392 (504)
Q Consensus 374 ~~--~~~~~~~~~~a~~~~~~ 392 (504)
+. .....|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 23356777777666655
No 335
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=86.19 E-value=23 Score=31.14 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH-HHhcCchhHHHHHHHHHHHcC
Q 043204 188 SYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFA-LCDQGKIQDAMQILEKILRKG 255 (504)
Q Consensus 188 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~ 255 (504)
.+-.....|++.|+.+.|++.+.+-+++....|.+.|+..+..-+.. |....-+.+-++..+.+.+.|
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 34445556777777777777777776666666777676555443332 222222344444444444443
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.17 E-value=2.2 Score=23.93 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=11.3
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHH
Q 043204 406 YGILVDGLCRDGRFLEASRVLEEML 430 (504)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~~~ 430 (504)
++.|...|...|++++|..++++..
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3444444444444444444444443
No 337
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=86.01 E-value=20 Score=30.81 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=61.6
Q ss_pred hcCChhHHHHHHHHHHhcCCC---CCcchh--------cHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHH
Q 043204 20 KQKSPLTALKIFKEAKEKYPN---YRHNGP--------VYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIR 88 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~~p~---~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (504)
-..|+..|++.-++..+...+ ...+.. ....=|.++++.|+|.++..+.-+--+.--+..+.+...=|-
T Consensus 47 V~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL 126 (309)
T PF07163_consen 47 VHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL 126 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH
Confidence 356777888777777665311 111111 122234677777777777666544333211223334444455
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHh-----cchHHHHHHHH
Q 043204 89 TYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVK-----ESKLEAAHILF 138 (504)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~ 138 (504)
.|.+.+.+..+.++-....+..-.-+..-|.+++..|.. .|.+++|+++.
T Consensus 127 LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 127 LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 566777777777666655543222222335555554443 36666666555
No 338
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.91 E-value=22 Score=30.77 Aligned_cols=59 Identities=7% Similarity=0.088 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 043204 150 RIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ-GCYPDRESYHILMKGLCNDRRLNEATHL 208 (504)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 208 (504)
+..+...++..+++.+++.+-.++++..... +..-|...|..+|+.-...|+..-...+
T Consensus 201 ~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 201 TRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred ChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 3334444555555555555555555544433 3334555555555555555554444333
No 339
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.46 E-value=42 Score=33.50 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=55.0
Q ss_pred HHHHhccCChhHHHHHHHHhhcCCCCc---cHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc
Q 043204 52 IGILSESNRITEMKEVIDQMKGDSCEC---KDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKE 128 (504)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (504)
++-+.+.+.+++|.++.+..... .| -.......|..+.-.|++++|-...-.|.... ..-|.-.+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~----~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNN----AAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcch----HHHHHHHHHHhccc
Confidence 45566777778887777665543 33 23446667777777778888777777666543 33333333444444
Q ss_pred chHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhh
Q 043204 129 SKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQ 163 (504)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (504)
++......+ +... +...+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~-~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTG-PPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCC-CcccCchHHHHHHHHHHH
Confidence 433332221 1111 112234456666666655
No 340
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.27 E-value=17 Score=28.89 Aligned_cols=62 Identities=16% Similarity=0.080 Sum_probs=35.5
Q ss_pred CCCch-hhHHHHHHHHhhcC----c-------HHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 399 CVANG-ETYGILVDGLCRDG----R-------FLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 399 ~~p~~-~~~~~l~~~~~~~g----~-------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
+.|+. .++.++..+|...+ + +++|...|++.... .|+...|+.-+.... +|-++..++.+
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~ 135 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHK 135 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHH
Confidence 45654 46666666665443 2 45555555555553 588888888877663 46666666665
Q ss_pred cC
Q 043204 467 QA 468 (504)
Q Consensus 467 ~~ 468 (504)
++
T Consensus 136 ~~ 137 (186)
T PF06552_consen 136 QG 137 (186)
T ss_dssp SS
T ss_pred HH
Confidence 54
No 341
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=85.12 E-value=35 Score=32.80 Aligned_cols=112 Identities=13% Similarity=-0.058 Sum_probs=79.7
Q ss_pred hhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHH
Q 043204 262 RRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAAL 341 (504)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (504)
.......-++.-.|+...|.+.+..+....+.-..+....+...+.+.|-..+|-.++.+..... ...+.++-.+.++|
T Consensus 608 ~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~ 686 (886)
T KOG4507|consen 608 LILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAY 686 (886)
T ss_pred EEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhH
Confidence 33344455667889999999998888755444444555566666777777888888887776654 33567778888999
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Q 043204 342 FKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKG 376 (504)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (504)
....++++|++.|+++|... +.+..+-+.|...
T Consensus 687 l~l~~i~~a~~~~~~a~~~~--~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALKLT--TKCPECENSLKLI 719 (886)
T ss_pred HHHhhhHHHHHHHHHHHhcC--CCChhhHHHHHHH
Confidence 99999999999999988775 3445555555443
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.72 E-value=3 Score=24.12 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=12.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhC
Q 043204 86 AIRTYARAGQLNEAVSLFKNLSQF 109 (504)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~~ 109 (504)
+..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
No 343
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.46 E-value=84 Score=36.16 Aligned_cols=150 Identities=9% Similarity=-0.027 Sum_probs=87.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHh----hhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q 043204 85 TAIRTYARAGQLNEAVSLFKNL----SQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDV 160 (504)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (504)
.+..+-.+++.+.+|.-.++.- ++.. ....-|..+...|...+++|....+...-.. .|+. ..-|..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl---~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSL---YQQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccH---HHHHHH
Confidence 4455666778888888888873 2221 1122333444488888888887777764221 1221 233445
Q ss_pred HhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHH-HHHHHhcC
Q 043204 161 LCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTL-LFALCDQG 239 (504)
Q Consensus 161 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g 239 (504)
....|++..|...|+.+.+.+ ++...+++-++......+.++.+.-..+-. . ....+....++++ +.+--+.+
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~----~-~~~se~~~~~~s~~~eaaW~l~ 1532 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGL----I-INRSEEVDELNSLGVEAAWRLS 1532 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcch----h-hccCHHHHHHHHHHHHHHhhhc
Confidence 566789999999999998774 223667777777777777777766654443 1 1122223333332 23335666
Q ss_pred chhHHHHHHH
Q 043204 240 KIQDAMQILE 249 (504)
Q Consensus 240 ~~~~a~~~~~ 249 (504)
+++.....+.
T Consensus 1533 qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1533 QWDLLESYLS 1542 (2382)
T ss_pred chhhhhhhhh
Confidence 6666665554
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.53 E-value=1.8 Score=22.96 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=22.6
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEKYP 39 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 39 (504)
|..+...|...|++++|...|++..+..|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55677788888888888888888877643
No 345
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=83.42 E-value=29 Score=30.54 Aligned_cols=134 Identities=14% Similarity=0.039 Sum_probs=66.6
Q ss_pred CcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---cCCCCchh
Q 043204 328 WPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQ---VGCVANGE 404 (504)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~ 404 (504)
..|...++.|..+ +..++++-.+..+++-+..|-.--...+......|++.||.+.|++.+.+..++ .|.+.|..
T Consensus 67 ~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVv 144 (393)
T KOG0687|consen 67 KLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVV 144 (393)
T ss_pred eccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhH
Confidence 3344444444432 122333444444443333333333445566667788888888888777765443 14555554
Q ss_pred hHHHHH-HHHhhcCcHHHHHHHHHHHHhcCcC----CCcchHHHHHHHHHccCCHHHHHHHHHHHH
Q 043204 405 TYGILV-DGLCRDGRFLEASRVLEEMLIRSYW----PCVETYNVLIRGLCSIGKQYEAVMWLEEMI 465 (504)
Q Consensus 405 ~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (504)
.+.+=+ -.|....-+.+-.+..+.+.+.|.. ....+|..+- |....++++|-.+|-+..
T Consensus 145 f~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 145 FYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 443322 2233333334444444455555432 2234444443 334567777777776665
No 346
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.42 E-value=35 Score=31.03 Aligned_cols=193 Identities=11% Similarity=0.052 Sum_probs=99.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCC----CccHHHHHHHHHH
Q 043204 14 LSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSC----ECKDSVFATAIRT 89 (504)
Q Consensus 14 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~ 89 (504)
...+.-+.|+|+...+........ .++...+.++... ..++++++...++.+...-. ......|......
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~----~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~ 77 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED----SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPS 77 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC----ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 346677889999855554444332 2345555555443 78889988888877664310 0111222222222
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc-----chHHHHHHHH---HHhhc-CCCCcchHHHHHHHHHH
Q 043204 90 YARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKE-----SKLEAAHILF---LRSCY-GWEVKSRIQSLNLLMDV 160 (504)
Q Consensus 90 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~---~~~~~-~~~~~~~~~~~~~l~~~ 160 (504)
..+...+.+..++.+........ ......++...... .+++.-..++ ..+.. .........+|..++..
T Consensus 78 l~~lq~L~Elee~~~~~~~~~~~--~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 78 LVKLQQLVELEEIIELKSNLSQN--PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred HHHHhHHHHHHHHHHHHHhhccc--HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 22222223322222222111000 11112222222111 1111111111 11111 01123456678888899
Q ss_pred HhhcCCHHHHHHHHHHhhhCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043204 161 LCQCRRSDLALHVFQEMDFQGCYP---DRESYHILMKGLCNDRRLNEATHLLYSMFW 214 (504)
Q Consensus 161 ~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 214 (504)
+.+.|.++.|...+..+...+... ++.....-++..-..|+..+|...++....
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988753211 334445556667788999999999888743
No 347
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.09 E-value=3.5 Score=21.81 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=19.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 440 TYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 440 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666777777888888888777764
No 348
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.04 E-value=24 Score=32.78 Aligned_cols=88 Identities=14% Similarity=0.051 Sum_probs=41.9
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHH
Q 043204 341 LFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFL 420 (504)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 420 (504)
+...|+++.+...+.. .... +-....+...+++.....|+++.|...-+.|... .+. ++.......-..-..|-++
T Consensus 333 ~~~lg~ye~~~~~~s~-~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 333 FSHLGYYEQAYQDISD-VEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHhhhHHHHHHHhhc-hhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc-ccC-ChhheeeecccHHHHhHHH
Confidence 4455666666655554 2111 2233345555555666666666666666555543 222 2222222222223345556
Q ss_pred HHHHHHHHHHhc
Q 043204 421 EASRVLEEMLIR 432 (504)
Q Consensus 421 ~A~~~~~~~~~~ 432 (504)
++...|++....
T Consensus 409 ~~~~~wk~~~~~ 420 (831)
T PRK15180 409 KSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHhcc
Confidence 666666655543
No 349
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.75 E-value=15 Score=29.89 Aligned_cols=75 Identities=12% Similarity=-0.068 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC---CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043204 130 KLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ---GCYPDRESYHILMKGLCNDRRLNEAT 206 (504)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~ 206 (504)
.-+.|.+.|-.+...+.+ -++.....|...|. ..|.+++..++.+..+. +-.+|+..+.+|++.+.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPEL-ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 346677777777655444 34555555665555 78899999998887653 33678899999999999999998874
No 350
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.61 E-value=2.2 Score=21.13 Aligned_cols=17 Identities=35% Similarity=0.313 Sum_probs=7.3
Q ss_pred HHHHHccCCHHHHHHHH
Q 043204 445 IRGLCSIGKQYEAVMWL 461 (504)
Q Consensus 445 ~~~~~~~g~~~~a~~~~ 461 (504)
..++...|++++|..++
T Consensus 8 a~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 8 ARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33444444444444443
No 351
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.92 E-value=29 Score=28.99 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=11.5
Q ss_pred HHhccCChhHHHHHHHHh
Q 043204 54 ILSESNRITEMKEVIDQM 71 (504)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~ 71 (504)
.+.-.+++++|.++|.+.
T Consensus 23 lfgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERA 40 (288)
T ss_pred ccCCCcchHHHHHHHHHH
Confidence 344555777777777654
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.77 E-value=6.2 Score=33.83 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHh
Q 043204 83 FATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRS 141 (504)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 141 (504)
++...+.|..+|.+.+|.++.+...+.+ +.+...+-.++..+...|+--.+.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4444556666666666666666666554 334455556666666666655555555444
No 353
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.60 E-value=21 Score=27.27 Aligned_cols=81 Identities=10% Similarity=0.194 Sum_probs=43.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCC-----CccHHHHHHHHHHHHhcCC-hhHHHHHHHHhhhCCCCccHHHHHHH
Q 043204 48 YASMIGILSESNRITEMKEVIDQMKGDSC-----ECKDSVFATAIRTYARAGQ-LNEAVSLFKNLSQFNCVNWTQSFNTL 121 (504)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (504)
.|.++......+++.-...+++.+..... ..+...|..++....+... --.+..+|+.+++.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45666665666666666666665532210 1233445666666544444 33455566666655555655666666
Q ss_pred HHHHHhc
Q 043204 122 LKEMVKE 128 (504)
Q Consensus 122 l~~~~~~ 128 (504)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6555443
No 354
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.38 E-value=16 Score=29.57 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=27.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 196 LCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 196 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
+.+.|++++|..-|...+.......-......|..-..+..+.+.++.|++--...++.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence 44556666666666555211111111111233444445555666666666555555443
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.34 E-value=6.1 Score=26.23 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=6.5
Q ss_pred HHHHHHHHhcCChHHH
Q 043204 371 NILLKGLCDAGNSAVA 386 (504)
Q Consensus 371 ~~l~~~~~~~~~~~~a 386 (504)
..++.+|+..|++.++
T Consensus 47 G~l~qA~~e~Gkyr~~ 62 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREM 62 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 356
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.96 E-value=3.4 Score=21.53 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=6.6
Q ss_pred HccCCHHHHHHHHHHHH
Q 043204 449 CSIGKQYEAVMWLEEMI 465 (504)
Q Consensus 449 ~~~g~~~~a~~~~~~~~ 465 (504)
.+.|++++|.+.|+++.
T Consensus 11 ~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 11 YKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 33333344444333333
No 357
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.99 E-value=39 Score=29.30 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=51.3
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 043204 406 YGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMI-----SQAKLPDISV 475 (504)
Q Consensus 406 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~p~~~~ 475 (504)
++.....|..+|.+.+|.++-++....+ +.+...|-.++..++..|+--.|.+-++++. +.|+..|..+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 4555677888999999999998888764 5677778888889999998777777777665 2355555443
No 358
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.55 E-value=54 Score=30.65 Aligned_cols=125 Identities=9% Similarity=0.016 Sum_probs=81.6
Q ss_pred HHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043204 124 EMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLN 203 (504)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 203 (504)
-....|++-.|-+-+........-.|+.....+ ..+...|+++.+...+...... +.....+...+++...+.|+++
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 334456766665544444444445566553333 3466789999999888766543 2335577888899899999999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCC
Q 043204 204 EATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGL 256 (504)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 256 (504)
.|..+-.-| ....++ +...........-..|-++++.-.++++...+.
T Consensus 375 ~a~s~a~~~----l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 375 EALSTAEMM----LSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHHH----hccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 999988877 555454 333333333344556778899989988877653
No 359
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.38 E-value=11 Score=30.84 Aligned_cols=34 Identities=18% Similarity=-0.003 Sum_probs=18.8
Q ss_pred CCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 398 GCVANGETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 398 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
...|++.+|..++.++...|+.++|.+..+++..
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554
No 360
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.34 E-value=84 Score=32.13 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=32.7
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcch-H---HHHHH--HHHccCCHHHHHHHHHH
Q 043204 408 ILVDGLCRDGRFLEASRVLEEMLIRSYWPCVET-Y---NVLIR--GLCSIGKQYEAVMWLEE 463 (504)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~---~~l~~--~~~~~g~~~~a~~~~~~ 463 (504)
.|+..+...|+.++|...++++......+.... | ...+. .....|+.+.+.....+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 566777778888888888888776533232111 1 11222 22346777777666655
No 361
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.27 E-value=3.3 Score=20.91 Aligned_cols=27 Identities=22% Similarity=0.075 Sum_probs=16.5
Q ss_pred chHHHHHHHhcCChhHHHHHHHHHHhc
Q 043204 11 PTYLSQIIKKQKSPLTALKIFKEAKEK 37 (504)
Q Consensus 11 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 37 (504)
+..+...+...|++++|...|+...+.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 444555666666666666666666554
No 362
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.84 E-value=44 Score=28.65 Aligned_cols=23 Identities=13% Similarity=-0.087 Sum_probs=13.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Q 043204 193 MKGLCNDRRLNEATHLLYSMFWR 215 (504)
Q Consensus 193 ~~~~~~~~~~~~a~~~~~~~~~~ 215 (504)
+++|...|+...|..-|+.-..+
T Consensus 17 ~rl~l~~~~~~~Av~q~~~H~~~ 39 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFRAHIDR 39 (247)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH
Confidence 35566666666666666554333
No 363
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.67 E-value=17 Score=26.81 Aligned_cols=45 Identities=11% Similarity=0.067 Sum_probs=23.6
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcC
Q 043204 100 VSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYG 144 (504)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
.+-++.+...++.|++.+....++++-+.+++..|.++|+.+..+
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344444445555555555555555555555555555555555433
No 364
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.47 E-value=21 Score=28.38 Aligned_cols=98 Identities=14% Similarity=0.053 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhcc---CChh-------HHHHHHHHhhcCCCCccHHHHHHHHHHHHhc
Q 043204 24 PLTALKIFKEAKEKYPNYRHNGPVYASMIGILSES---NRIT-------EMKEVIDQMKGDSCECKDSVFATAIRTYARA 93 (504)
Q Consensus 24 ~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~---~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (504)
++.|.+.++..-..+|. |...++....++... .+.. +|+.-|++..... |....++..+..+|...
T Consensus 7 FE~ark~aea~y~~nP~---DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL---DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH---hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHH
Confidence 45677777776677776 666655555544433 3323 3444444444443 23334555555555443
Q ss_pred C----ChhHHHHHHHHhhh-----CCCCccHHHHHHHHHHH
Q 043204 94 G----QLNEAVSLFKNLSQ-----FNCVNWTQSFNTLLKEM 125 (504)
Q Consensus 94 ~----~~~~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~ 125 (504)
+ +..+|...|+...+ ....|+..+|+.-+...
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 2 23333333332221 12245555665555544
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=77.44 E-value=13 Score=27.36 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 043204 63 EMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQ 108 (504)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (504)
+..+.+..+...++.|++.+....+++|.+-+|+..|.++|+-++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555566666666666666666666666666666666654
No 366
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.38 E-value=19 Score=25.07 Aligned_cols=59 Identities=20% Similarity=0.144 Sum_probs=37.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhhCCCCcC----HHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 196 LCNDRRLNEATHLLYSMFWRISQKGSGED----IVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 196 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
..+.|++..|.+.+.+.++.....+.... ....-.+...+...|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35678888887777777655444443331 122233455667778888888888887664
No 367
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.35 E-value=94 Score=32.19 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHhhcC
Q 043204 118 FNTLLKEMVKESKLEAAHILFLRSCYG 144 (504)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 144 (504)
|..|+..|...|..++|++++.+....
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 566777777777777777777777653
No 368
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.15 E-value=7.3 Score=20.05 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred CChhHHHHHHHHHHhcCCCCCcchhcHHHHHH
Q 043204 22 KSPLTALKIFKEAKEKYPNYRHNGPVYASMIG 53 (504)
Q Consensus 22 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 53 (504)
|+++.|..+|+++....|. +...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~---~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPK---SVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC---ChHHHHHHHH
Confidence 4567777788887777553 5666655554
No 369
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=75.67 E-value=24 Score=24.45 Aligned_cols=63 Identities=10% Similarity=0.122 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCc-cHHHHHHHHHHHHhcC
Q 043204 29 KIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCEC-KDSVFATAIRTYARAG 94 (504)
Q Consensus 29 ~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 94 (504)
.-++.....+|+ |......+...+...|++++|.+.+-.+.+..... +...-..++..+...|
T Consensus 9 ~al~~~~a~~P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 9 AALEAALAANPD---DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 344455555666 66676777777777777777777777666554222 2233444444444444
No 370
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.44 E-value=1.7e+02 Score=34.07 Aligned_cols=324 Identities=11% Similarity=0.012 Sum_probs=160.8
Q ss_pred HHHHHHHhcchHHHHHHHHHHhhcC-CCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043204 120 TLLKEMVKESKLEAAHILFLRSCYG-WEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCN 198 (504)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 198 (504)
.+..+-.+.+.+.+|...+++-... ........-+..+...|+..++++...-+...-.. +...+. -|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 4555677889999999999884211 11112233455556699999999998888774221 223333 3444678
Q ss_pred cCCHHHHHHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCCh
Q 043204 199 DRRLNEATHLLYSMFWRISQKGSGED-IVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDI 277 (504)
Q Consensus 199 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (504)
.|+++.|...|+.+ .+. .|+ ..+++-++......|.++......+..... ..+.....++.-..+.-+.+++
T Consensus 1462 ~g~~~da~~Cye~~----~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1462 SGNWADAAACYERL----IQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred hccHHHHHHHHHHh----hcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcch
Confidence 89999999999988 443 334 567777777777778877777655554432 1222222223222233455566
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHH-H-HHHHhc--CChhHHHHHHHHHHHCCCCc---------chhhHHHHHHHHhcC
Q 043204 278 EGAKSLINEALIRGGIPSLASYSAM-A-IDLYNE--GRIVEGDKVLDEMRTKGFWP---------SLVMYEAKLAALFKD 344 (504)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~l-l-~~~~~~--~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~ 344 (504)
+.....+. . .+..+|... + ....+. .+.-.-.+..+.+++.-+.| -...|..++....-.
T Consensus 1535 D~~e~~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1535 DLLESYLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhhhhhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 65555544 1 123333333 1 112221 11111112222222211100 112333333332221
Q ss_pred CCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC-----chhhHHHHHHHHhhcCcH
Q 043204 345 GMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVA-----NGETYGILVDGLCRDGRF 419 (504)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~ 419 (504)
.--.....+... -......-+..-|..-+.--....+..+-+--+++..-.....| -..+|....+...+.|.+
T Consensus 1608 el~~~~~~l~~~-s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1608 ELENSIEELKKV-SYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHHhhcc-CccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 111111111110 00000111111222222111111111111111111111101122 235677788888889999
Q ss_pred HHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043204 420 LEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQ 467 (504)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (504)
+.|...+-...+.+ -+..+--...-.-..|+...|+.++++..+.
T Consensus 1687 q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 99998887777765 2334445566677889999999999988854
No 371
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.82 E-value=53 Score=28.08 Aligned_cols=50 Identities=10% Similarity=0.109 Sum_probs=27.1
Q ss_pred cCChhHHHHHHHHhhhCCCCccHH---HHHHHHHHHHhcchHHHHHHHHHHhh
Q 043204 93 AGQLNEAVSLFKNLSQFNCVNWTQ---SFNTLLKEMVKESKLEAAHILFLRSC 142 (504)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (504)
..++++|+.-|+...+....-... +...++....+.+++++....|.++.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 346667777777666543322222 23344555566666666665555553
No 372
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=74.79 E-value=43 Score=26.99 Aligned_cols=172 Identities=10% Similarity=0.047 Sum_probs=87.6
Q ss_pred CCCCChhhHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCcchh----hHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 043204 291 GGIPSLASYSAMAIDLYNE----GRIVEGDKVLDEMRTKGFWPSLV----MYEAKLAALFKDGMVDEALEVIEEEMVKGT 362 (504)
Q Consensus 291 ~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 362 (504)
|..++...++.++..+.+. +..+.+..+=.+....++.++-. ....-+..|-..|++.+--.+|-. ....-
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~n-v~~gc 81 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYIN-VKMGC 81 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhh-HHhhc
Confidence 4446677777777666655 44444555555555555444322 222334456666777666666654 22221
Q ss_pred CCc-cHHHHHH-HHHHHHhcC--ChHHHHHHHHHHHHhcCCCCch-------hhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 363 FVP-TVRVYNI-LLKGLCDAG--NSAVAVMYLKKMSKQVGCVANG-------ETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 363 ~~~-~~~~~~~-l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
-.+ +...+.. +..++.+.- ++.--...|.+..-+ ....|. .+--+++..|-+.-++.++.++++.|.+
T Consensus 82 e~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k-~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 82 EKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCK-DPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred CCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhc-CCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111111 111111110 110011112222111 111111 1224566778888899999999998877
Q ss_pred cCcC--------------CCcchHHHHHHHHHccCCHHHHHHHHHHH
Q 043204 432 RSYW--------------PCVETYNVLIRGLCSIGKQYEAVMWLEEM 464 (504)
Q Consensus 432 ~~~~--------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 464 (504)
..+. +.-...|.....|.+.|..+.|..++++-
T Consensus 161 l~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 161 LQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 5322 22234577778899999999999998843
No 373
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=74.21 E-value=24 Score=26.40 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHcCCC
Q 043204 243 DAMQILEKILRKGLK 257 (504)
Q Consensus 243 ~a~~~~~~~~~~~~~ 257 (504)
.+.++|..|..+++-
T Consensus 81 ~~~~if~~l~~~~IG 95 (126)
T PF08311_consen 81 DPREIFKFLYSKGIG 95 (126)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHcCcc
Confidence 556666666655543
No 374
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.05 E-value=83 Score=29.92 Aligned_cols=94 Identities=12% Similarity=-0.012 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCc-----chhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHH
Q 043204 300 SAMAIDLYNEGRIVEGDKVLDEMRTKGFWP-----SLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILL 374 (504)
Q Consensus 300 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 374 (504)
..-+..+...++.+.+...|.+...+=++. -...|.-+...- ..+.+....+..+.-...|...-.+.+.-+-
T Consensus 135 ~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 135 GRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 333334444456666666666555431110 011233332211 2344555555554333333333444444444
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 043204 375 KGLCDAGNSAVAVMYLKKMSK 395 (504)
Q Consensus 375 ~~~~~~~~~~~a~~~~~~~~~ 395 (504)
.-|....++.+|++++..+.+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 213 KKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHhccccCHHHHHHHHHHHhh
Confidence 555555556666665555554
No 375
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.04 E-value=8.9 Score=33.27 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=34.4
Q ss_pred CCccHHH-HHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHH
Q 043204 76 CECKDSV-FATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFN 119 (504)
Q Consensus 76 ~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (504)
+.|+... |+..|....+.||+++|++++++.++.|..--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3466665 6899999999999999999999999988765444443
No 376
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.02 E-value=15 Score=21.68 Aligned_cols=33 Identities=9% Similarity=-0.028 Sum_probs=21.2
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043204 449 CSIGKQYEAVMWLEEMISQAKLPDISVWSSLVA 481 (504)
Q Consensus 449 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 481 (504)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666666666777766676666666666554
No 377
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.06 E-value=3.3 Score=36.30 Aligned_cols=85 Identities=9% Similarity=0.006 Sum_probs=44.8
Q ss_pred ccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHH
Q 043204 57 ESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHI 136 (504)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 136 (504)
..|.+++|++.|...+... ++....|.--.+++.+.+....|++=++...+.+... ..-|-.--.+..-.|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhchHHHHH
Confidence 3455666666666666655 4555555555666666666666666665555443211 1122222222333466666666
Q ss_pred HHHHhhc
Q 043204 137 LFLRSCY 143 (504)
Q Consensus 137 ~~~~~~~ 143 (504)
.|+..++
T Consensus 204 dl~~a~k 210 (377)
T KOG1308|consen 204 DLALACK 210 (377)
T ss_pred HHHHHHh
Confidence 6665554
No 378
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=71.83 E-value=75 Score=28.50 Aligned_cols=79 Identities=11% Similarity=-0.045 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcCCCC---cchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043204 131 LEAAHILFLRSCYGWEV---KSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATH 207 (504)
Q Consensus 131 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 207 (504)
...|.+.|+....+... ..+......++....+.|+.+.-..+++.... .++......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 45677777777654221 22223335566666677776665555555554 2466667777787777777777777
Q ss_pred HHHHH
Q 043204 208 LLYSM 212 (504)
Q Consensus 208 ~~~~~ 212 (504)
+++..
T Consensus 223 ~l~~~ 227 (324)
T PF11838_consen 223 LLDLL 227 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77776
No 379
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.47 E-value=63 Score=27.95 Aligned_cols=89 Identities=12% Similarity=-0.097 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHh-
Q 043204 301 AMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCD- 379 (504)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 379 (504)
.-|.+++..+++.++....-+--+.--+........-|-.|.+.+++..+.++-...+...+ .-+..-|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 34677777788887776554443321112334445555567888888888877776444332 2333447666666554
Q ss_pred ----cCChHHHHHHH
Q 043204 380 ----AGNSAVAVMYL 390 (504)
Q Consensus 380 ----~~~~~~a~~~~ 390 (504)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 58888887776
No 380
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=70.37 E-value=47 Score=27.66 Aligned_cols=97 Identities=14% Similarity=0.002 Sum_probs=59.5
Q ss_pred HHHhcCChHHHHHHHHHHHHhc---CCCCch--hhHHHHHHHHhhcCcH-------HHHHHHHHHHHhcCcCCC----c-
Q 043204 376 GLCDAGNSAVAVMYLKKMSKQV---GCVANG--ETYGILVDGLCRDGRF-------LEASRVLEEMLIRSYWPC----V- 438 (504)
Q Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~---~~~p~~--~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~~----~- 438 (504)
-+.....+++|.+.|.-..-.. +.+|.. ..+--+...|...|+. ..|.+.|.+..+..-.|. .
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 4666778888888888765432 223332 3445566677777773 446666666665432221 1
Q ss_pred chHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 043204 439 ETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPD 472 (504)
Q Consensus 439 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 472 (504)
...-.+.....+.|+.++|.+.|.++...+-.+.
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 2223344567788999999999999986654433
No 381
>PRK12798 chemotaxis protein; Reviewed
Probab=70.16 E-value=92 Score=28.82 Aligned_cols=199 Identities=11% Similarity=0.059 Sum_probs=96.9
Q ss_pred CCCCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHH
Q 043204 5 WPRLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFA 84 (504)
Q Consensus 5 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
|-|..-....+-.....|+++....++..-... ..+......+ .+| -.|+.+++.+.|..+.....++....+.
T Consensus 78 w~dprNv~Aa~iy~lSGGnP~vlr~L~~~d~~~----~~d~~L~~g~-laY-~~Gr~~~a~~~La~i~~~~l~~~lg~~l 151 (421)
T PRK12798 78 WDDPRNVDAALIYLLSGGNPATLRKLLARDKLG----NFDQRLADGA-LAY-LSGRGREARKLLAGVAPEYLPAELGAYL 151 (421)
T ss_pred hCCccchhHHHhhHhcCCCHHHHHHHHHcCCCC----hhhHHHHHHH-HHH-HcCCHHHHHHHhhcCChhhcCchhhhHH
Confidence 444444444554555566666555544332211 1122121111 122 2567788888888777766666666676
Q ss_pred HHHHHHH-hcCChhHHHHHHHHhhh--CCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHH-HHHHHH
Q 043204 85 TAIRTYA-RAGQLNEAVSLFKNLSQ--FNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSL-NLLMDV 160 (504)
Q Consensus 85 ~l~~~~~-~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~ 160 (504)
.|+.+-. ...+...|+++|++..= .|--.......--+-.....|+.+++..+-.+...+....|=..-| ..+...
T Consensus 152 aLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~ 231 (421)
T PRK12798 152 ALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDL 231 (421)
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 6665543 34577788888886542 2222222233333445566677776555444443332222211111 112222
Q ss_pred Hhhc---CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043204 161 LCQC---RRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 161 ~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
+.+. -..+....++..|... --...|..+.+.-.-.|+.+-|...-++.
T Consensus 232 ~~~~~d~~~~~~l~~~ls~~d~~---~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 232 VVRLDDEIRDARLVEILSFMDPE---RQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHhccccccHHHHHHHHHhcCch---hHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 2222 2233333344443321 12346666666667777777766665555
No 382
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.44 E-value=12 Score=23.65 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHH
Q 043204 420 LEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMI 465 (504)
Q Consensus 420 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (504)
+...++++.++.. .-|...--.+|.++...|++++|.++++++.
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444332 1233333445666666677777766666665
No 383
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=69.24 E-value=81 Score=27.80 Aligned_cols=150 Identities=15% Similarity=0.087 Sum_probs=77.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhc----cCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHh----
Q 043204 21 QKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSE----SNRITEMKEVIDQMKGDSCECKDSVFATAIRTYAR---- 92 (504)
Q Consensus 21 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 92 (504)
.+++..|...+...... + +......+...+.. ..+..+|.++|+...+.| .......+...|..
T Consensus 54 ~~~~~~a~~~~~~a~~~--~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 54 PPDYAKALKSYEKAAEL--G---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccHHHHHHHHHHhhhc--C---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCc
Confidence 44566677777776653 2 33333344444432 245667777777666655 22233334444443
Q ss_pred cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcc-------hHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhh--
Q 043204 93 AGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKES-------KLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQ-- 163 (504)
Q Consensus 93 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 163 (504)
..+..+|...|+...+.|..+...+...+...|..-. +...|...|.+..... +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGL 201 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCC
Confidence 3377777777777777775543122233333333221 2235666666655442 22222333333322
Q ss_pred --cCCHHHHHHHHHHhhhCCC
Q 043204 164 --CRRSDLALHVFQEMDFQGC 182 (504)
Q Consensus 164 --~~~~~~a~~~~~~~~~~~~ 182 (504)
..+.++|...|....+.|.
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCCC
Confidence 3466677777777666653
No 384
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.08 E-value=14 Score=22.47 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=21.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043204 444 LIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVA 481 (504)
Q Consensus 444 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 481 (504)
+.-++.+.|++++|.+..+.+++ +.|+..-...|-.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 44466777777777777777774 3566655444443
No 385
>PRK10941 hypothetical protein; Provisional
Probab=68.48 E-value=29 Score=30.09 Aligned_cols=76 Identities=8% Similarity=-0.032 Sum_probs=56.9
Q ss_pred HHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCccHHHHHHHHHH
Q 043204 48 YASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFN-CVNWTQSFNTLLKE 124 (504)
Q Consensus 48 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~ 124 (504)
.+.+-.+|.+.++++.|..+.+.+.... |.++.-+.--.-.|.+.|.+..|..=++...+.- -.|++......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4556678889999999999999999887 6667777777888999999999999888776543 34554444444433
No 386
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.26 E-value=73 Score=26.90 Aligned_cols=119 Identities=14% Similarity=-0.017 Sum_probs=69.9
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhH-HHHHHHHhhcC
Q 043204 340 ALFKDGMVDEALEVIEEEMVKGTFVPTVR-VYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETY-GILVDGLCRDG 417 (504)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g 417 (504)
-|.....++.|+..|.+++.. .|+.. -|+.-+-++.+..+++.+..--.+.. .+.||..-- -.+..+.....
T Consensus 19 k~f~~k~y~~ai~~y~raI~~---nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI---NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred cccchhhhchHHHHHHHHHhc---CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhc
Confidence 366667778888877665554 45553 44555666777777777766655554 446665433 33445556677
Q ss_pred cHHHHHHHHHHHHhc----CcCCCcchHHHHHHHHHccCCHHHHHHHHHHH
Q 043204 418 RFLEASRVLEEMLIR----SYWPCVETYNVLIRGLCSIGKQYEAVMWLEEM 464 (504)
Q Consensus 418 ~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 464 (504)
.+++|...+.+..+. .+++-...+..|..+=-..=...+..++.++.
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 788888888777432 34444555666655433333344444444444
No 387
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=68.17 E-value=73 Score=26.89 Aligned_cols=80 Identities=10% Similarity=-0.025 Sum_probs=44.0
Q ss_pred CChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHH-HHHHHHHHHhcCChhHHH
Q 043204 22 KSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSV-FATAIRTYARAGQLNEAV 100 (504)
Q Consensus 22 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~ 100 (504)
..+..|+..+.+....+|. ...-|..-+-.+.+..+++.+..--.+..+. .||..- ...+.........++.|+
T Consensus 24 k~y~~ai~~y~raI~~nP~---~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPT---VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhchHHHHHHHHHhcCCC---cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHH
Confidence 3566677766666665442 2233444455556666666666555555544 244433 334444555566667776
Q ss_pred HHHHHh
Q 043204 101 SLFKNL 106 (504)
Q Consensus 101 ~~~~~~ 106 (504)
..+.+.
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 666654
No 388
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=67.79 E-value=46 Score=30.62 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHhccCChh---HHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 043204 49 ASMIGILSESNRIT---EMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEM 125 (504)
Q Consensus 49 ~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 125 (504)
..+++.+...++.+ +|.-+++...... +.|...--.+++.|...|-...|.+.|..+.=..++.|+-.| .+..-+
T Consensus 184 ~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h-~~~~r~ 261 (365)
T PF09797_consen 184 HSLLDLYSKTKDSEYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGH-LILDRL 261 (365)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHH-HHHHHH
Q ss_pred HhcchHHHHH-HHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHH
Q 043204 126 VKESKLEAAH-ILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQ 175 (504)
Q Consensus 126 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 175 (504)
...|....+. ..++....- ...+.....-.+....+.|.+.+..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~f--y~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 262 STLGPFKSAPENLLENALKF--YDNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred hccCcccccchHHHHHHHHH--HHHHHHHHHHHHHHHHhCCCchhHHHHHH
No 389
>PRK09687 putative lyase; Provisional
Probab=67.07 E-value=89 Score=27.45 Aligned_cols=232 Identities=10% Similarity=0.046 Sum_probs=114.6
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCCh----hHHHHHHHHhhhCCCCccHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQL----NEAVSLFKNLSQFNCVNWTQSFN 119 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 119 (504)
|.......+.++...|. +++...+..+.. .+|...-...+.++...|+. .++...+..+...+ ++..+-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHHH
Confidence 55566666666766664 334444444433 24555666666677776653 35666666553333 3333334
Q ss_pred HHHHHHHhcch-----HHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043204 120 TLLKEMVKESK-----LEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMK 194 (504)
Q Consensus 120 ~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 194 (504)
..+.++...+. ...+...+...... ++..+-...+.++.+.++ +.+...+-.+.+. +|...-...+.
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D----~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFD----KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhC----CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 44444444331 12333333333322 133344556666666666 3455555555542 45555555555
Q ss_pred HHHhcC-CHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCC
Q 043204 195 GLCNDR-RLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCND 273 (504)
Q Consensus 195 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (504)
++.+.+ +...+...+..+ . ..++..+-...+.++.+.|+ ..+...+-...+.+. ...........
T Consensus 182 aLg~~~~~~~~~~~~L~~~----L---~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~------~~~~a~~ALg~ 247 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAM----L---QDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT------VGDLIIEAAGE 247 (280)
T ss_pred HHhcCCCCCHHHHHHHHHH----h---cCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc------hHHHHHHHHHh
Confidence 555542 133454544444 2 23455666667777777776 445555555554321 11223334444
Q ss_pred CCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043204 274 GEDIEGAKSLINEALIRGGIPSLASYSAMAIDL 306 (504)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 306 (504)
.|+. .|...+..+.... ||...-...+.++
T Consensus 248 ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 248 LGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred cCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 4443 4555555555432 3444444444433
No 390
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.77 E-value=86 Score=27.21 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=28.5
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCccHHH-------HHHHHHHHHhcCChhHHHHH
Q 043204 51 MIGILSESNRITEMKEVIDQMKGDSCECKDSV-------FATAIRTYARAGQLNEAVSL 102 (504)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~ 102 (504)
+.+-..+.+++++|+..+.++...|+..+..+ ...+...|...|+....-+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 34445566666677777666666665554433 33344555555555444333
No 391
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.14 E-value=58 Score=25.01 Aligned_cols=83 Identities=11% Similarity=0.174 Sum_probs=57.9
Q ss_pred hHHHHHHHHhhcCcHHHHHHHHHHHHhcC-----cCCCcchHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHHHHHH
Q 043204 405 TYGILVDGLCRDGRFLEASRVLEEMLIRS-----YWPCVETYNVLIRGLCSIGK-QYEAVMWLEEMISQAKLPDISVWSS 478 (504)
Q Consensus 405 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~ 478 (504)
..++++.-.+..+++.-...+++.+.... -..+...|.+++.+.+...- ---+..+|+-|.+.+.+++...|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 35667766666777777777777664321 13456778888888866665 4456777888887788888889999
Q ss_pred HHHHHhcCCC
Q 043204 479 LVASVCCNTA 488 (504)
Q Consensus 479 ll~~~~~~~~ 488 (504)
++.+ |..|.
T Consensus 121 li~~-~l~g~ 129 (145)
T PF13762_consen 121 LIKA-ALRGY 129 (145)
T ss_pred HHHH-HHcCC
Confidence 9987 55554
No 392
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=66.09 E-value=44 Score=29.66 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHH--HHHHHHHhcCchhHHHHHHHHHHH
Q 043204 198 NDRRLNEATHLLYSMFWRISQKGSGEDIVIYR--TLLFALCDQGKIQDAMQILEKILR 253 (504)
Q Consensus 198 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~ 253 (504)
+.++.++|+++++++.+..... -.|+.+.|. .+.+++...||..++.+++++..+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~-~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEY-KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555554332222 223333332 233444445555555555555444
No 393
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.80 E-value=27 Score=32.55 Aligned_cols=106 Identities=9% Similarity=-0.011 Sum_probs=72.4
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 043204 12 TYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYA 91 (504)
Q Consensus 12 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (504)
-.-+..+...+.++.|..++.++.+.+|. .+..|..-..++.+.+++..|+.=+....+.. +--...|..-..++.
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpn---ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPN---CAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVM 83 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCc---ceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHH
Confidence 33455566778899999999999988664 55555555578888888988888888877765 333344555556677
Q ss_pred hcCChhHHHHHHHHhhhCCCCccHHHHHHHHH
Q 043204 92 RAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLK 123 (504)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 123 (504)
+.+.+.+|+..|+..... .|+..-....+.
T Consensus 84 ~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKL--APNDPDATRKID 113 (476)
T ss_pred hHHHHHHHHHHHHHhhhc--CcCcHHHHHHHH
Confidence 777888888888877654 344433334443
No 394
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.79 E-value=23 Score=22.40 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=10.7
Q ss_pred HHHHHHhhcCcHHHHHHHHHHHH
Q 043204 408 ILVDGLCRDGRFLEASRVLEEML 430 (504)
Q Consensus 408 ~l~~~~~~~g~~~~A~~~~~~~~ 430 (504)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555544443
No 395
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=65.73 E-value=1.2e+02 Score=28.37 Aligned_cols=74 Identities=23% Similarity=0.205 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHh
Q 043204 335 EAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLC 414 (504)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 414 (504)
..|+.-|...|+..+|.+.+++ +.-. +-.....+.+++.+.-+.|+-...+.+++..-.. ...|-+.|-++|.
T Consensus 513 ~~LLeEY~~~GdisEA~~Cike-LgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s-----glIT~nQMtkGf~ 585 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKE-LGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS-----GLITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHH-hCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CceeHHHhhhhhh
Confidence 4567777788888888887775 4322 2234556777777777777777666666666554 3445555555554
Q ss_pred h
Q 043204 415 R 415 (504)
Q Consensus 415 ~ 415 (504)
+
T Consensus 586 R 586 (645)
T KOG0403|consen 586 R 586 (645)
T ss_pred h
Confidence 3
No 396
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=65.43 E-value=21 Score=21.10 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=20.2
Q ss_pred hhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHH
Q 043204 414 CRDGRFLEASRVLEEMLIRSYWPCVETYNVLIR 446 (504)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 446 (504)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445666666666666666666666665555543
No 397
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.37 E-value=1.3e+02 Score=28.60 Aligned_cols=107 Identities=15% Similarity=0.048 Sum_probs=67.5
Q ss_pred HHHhcCChHHHHHHHHHHHHh--cCCCCc-----hhhHHHHHHHHhhcCcHHHHHHHHHHHHh-------cCcCCCc---
Q 043204 376 GLCDAGNSAVAVMYLKKMSKQ--VGCVAN-----GETYGILVDGLCRDGRFLEASRVLEEMLI-------RSYWPCV--- 438 (504)
Q Consensus 376 ~~~~~~~~~~a~~~~~~~~~~--~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~--- 438 (504)
.+.-.|++..|.+++...--. .|...+ -..||.|...+.+.|.+.-+..+|.+... .|+.|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 355678888888887654211 121112 12245555555667777777777766653 3554432
Q ss_pred --------chHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043204 439 --------ETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVC 484 (504)
Q Consensus 439 --------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 484 (504)
.+||. .-.|...|++..|.+.|.+.... +..++..|..+..+|.
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 22332 23577889999999999998864 6778889988888743
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.02 E-value=40 Score=27.50 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=27.1
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 043204 363 FVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQ 396 (504)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 396 (504)
..|+..+|..++.++...|+.++|.+..+++..-
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678888888888888888888888888887754
No 399
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=64.92 E-value=90 Score=26.77 Aligned_cols=64 Identities=14% Similarity=0.056 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 043204 189 YHILMKGLCNDRRLNEATHLLYSMFWRISQKGS-GEDIVIYRTLLFALCDQGKIQDAMQILEKIL 252 (504)
Q Consensus 189 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 252 (504)
.-.+..-|.+.|++++|.++|+.+.....+.|- .+...+...+..++.+.|+.+....+--++.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345667788899999999999988555455553 2345566778888888999888877766554
No 400
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.86 E-value=95 Score=27.02 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHc----CCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCCh----h
Q 043204 226 VIYRTLLFALCDQGKIQDAMQILEKILRK----GLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSL----A 297 (504)
Q Consensus 226 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 297 (504)
..+..+..-|++.++.+.+.++..+..+. |.+.+......-+.-.+....-+++.++..+.++++|..-+. .
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK 195 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYK 195 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHH
Confidence 34444455555555555544444433222 222222222222333333333444444444444444432211 1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 043204 298 SYSAMAIDLYNEGRIVEGDKVLDEMRT 324 (504)
Q Consensus 298 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (504)
+|..+- +....++.+|-.++.....
T Consensus 196 ~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 196 VYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 222211 1122556666666655543
No 401
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.52 E-value=1e+02 Score=27.33 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=8.2
Q ss_pred cCCCHHHHHHHHHHHHh
Q 043204 343 KDGMVDEALEVIEEEMV 359 (504)
Q Consensus 343 ~~~~~~~a~~~~~~~~~ 359 (504)
+.|+..+|.+.+++.++
T Consensus 287 klGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhhHHHHHHHHHHHhh
Confidence 44555555555554333
No 402
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.61 E-value=1.9e+02 Score=30.11 Aligned_cols=39 Identities=8% Similarity=0.052 Sum_probs=27.5
Q ss_pred HHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043204 160 VLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCN 198 (504)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 198 (504)
.|......+-+..+++.+....-.++..-.+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 456677778888888888766555666667777776654
No 403
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=63.56 E-value=35 Score=21.58 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=23.8
Q ss_pred hccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH-----HhcCChhHHHHH
Q 043204 56 SESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY-----ARAGQLNEAVSL 102 (504)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~ 102 (504)
...|++-+|.++++.+-.....+....+..+|... .+.|+.+.|.++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 44566666677766666543233444455454432 244555555544
No 404
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.32 E-value=44 Score=26.75 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=14.4
Q ss_pred HHHHHHhcCChhHHHHHHHHhhh
Q 043204 86 AIRTYARAGQLNEAVSLFKNLSQ 108 (504)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~~~~ 108 (504)
.+..|.+.|.+++|.+++++..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34556666666666666666554
No 405
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=62.79 E-value=1.4e+02 Score=28.35 Aligned_cols=84 Identities=15% Similarity=0.267 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHH-HHhcCChhHHHHH
Q 043204 24 PLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRT-YARAGQLNEAVSL 102 (504)
Q Consensus 24 ~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~ 102 (504)
+.....+|+.+..+.++ |+..|...+..+-+.+.+.+...+|..|.... +.++..|.....- |-...+++.|..+
T Consensus 87 ~~rIv~lyr~at~rf~~---D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRal 162 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNG---DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARAL 162 (568)
T ss_pred HHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHH
Confidence 34567788899888766 99999999998888888999999999999876 5666666544443 3334459999999
Q ss_pred HHHhhhCCC
Q 043204 103 FKNLSQFNC 111 (504)
Q Consensus 103 ~~~~~~~~~ 111 (504)
|..-.+.+.
T Consensus 163 flrgLR~np 171 (568)
T KOG2396|consen 163 FLRGLRFNP 171 (568)
T ss_pred HHHHhhcCC
Confidence 998777653
No 406
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=62.59 E-value=19 Score=21.85 Aligned_cols=27 Identities=19% Similarity=-0.041 Sum_probs=19.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043204 14 LSQIIKKQKSPLTALKIFKEAKEKYPN 40 (504)
Q Consensus 14 l~~~~~~~~~~~~A~~~~~~~~~~~p~ 40 (504)
+.-++.+.|++++|.+..+.+++..|+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 445667788888888888888887665
No 407
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.18 E-value=97 Score=30.04 Aligned_cols=102 Identities=18% Similarity=0.101 Sum_probs=65.4
Q ss_pred HhcCChHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHH
Q 043204 378 CDAGNSAVAVMYLKKMSKQVGCVAN--GETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQY 455 (504)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 455 (504)
.-.|+...|...+...... .|- .+....|.....+.|-...|..++.+..... ...+.++-.+.+++.-..+.+
T Consensus 618 r~~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eecCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhH
Confidence 3467788888777776532 332 2344556666677777778888887776654 345566677777888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043204 456 EAVMWLEEMISQAKLPDISVWSSLVASVC 484 (504)
Q Consensus 456 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 484 (504)
+|++.|++..+.. .-+...-+.|+..-|
T Consensus 694 ~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 8888888887542 223344445544334
No 408
>PRK11619 lytic murein transglycosylase; Provisional
Probab=62.15 E-value=1.8e+02 Score=29.33 Aligned_cols=60 Identities=12% Similarity=-0.004 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 043204 296 LASYSAMAIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEE 356 (504)
Q Consensus 296 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (504)
......-+......++++.+...+..|....- -...-.--+..++...|+.++|...|+.
T Consensus 312 ~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 312 TSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred cHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344444445566777777777777644321 1333344556666667888888888776
No 409
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=62.03 E-value=1.1e+02 Score=26.56 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=13.5
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHH
Q 043204 12 TYLSQIIKKQKSPLTALKIFKEAK 35 (504)
Q Consensus 12 ~~l~~~~~~~~~~~~A~~~~~~~~ 35 (504)
+.+++.+.+.+....|..+.+.+.
T Consensus 86 ~~iL~~lL~~~~~~~a~~i~~~y~ 109 (258)
T PF07064_consen 86 HHILRHLLRRNLDEEALEIASKYR 109 (258)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhc
Confidence 345555555555566666665554
No 410
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=61.32 E-value=53 Score=32.18 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=54.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChh------HHHHHHHHhhcCCCCccHHHHHHH
Q 043204 13 YLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRIT------EMKEVIDQMKGDSCECKDSVFATA 86 (504)
Q Consensus 13 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 86 (504)
+|..+|...|++-.+.++++.......|-+.-...+|..|+-..+.|.++ .|.++++... +.-|.-||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 68899999999999999999988776554445567888888888888764 4445555444 33466677666
Q ss_pred HHHH
Q 043204 87 IRTY 90 (504)
Q Consensus 87 ~~~~ 90 (504)
+.+-
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 6554
No 411
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=61.14 E-value=1.3e+02 Score=27.47 Aligned_cols=167 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHHHhc---CCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcC--------------------CCC
Q 043204 21 QKSPLTALKIFKEAKEK---YPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGD--------------------SCE 77 (504)
Q Consensus 21 ~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~ 77 (504)
+++.++|++-+-...+. ..++..+..++..++..|...++|+...+.+..+.+. | .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~-~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDG-T 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccC-C
Q ss_pred ccHHHHHHHHHH-------------------------HHhcCChhHHHHHHHHhhhCCCCccHHHHHHH-----------
Q 043204 78 CKDSVFATAIRT-------------------------YARAGQLNEAVSLFKNLSQFNCVNWTQSFNTL----------- 121 (504)
Q Consensus 78 ~~~~~~~~l~~~-------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------- 121 (504)
||..+-..++.. +-..|+.++|..++.++. +.||.++
T Consensus 104 ~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLE 176 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILE 176 (439)
T ss_pred CCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHH
Q ss_pred -HHHHHhcchHHHHHHHHHHhhcCCCCcchHHH-----HHHHHHHHhhcCCHHHHHHHHHHhhhCC-CCCCHhhHHHHHH
Q 043204 122 -LKEMVKESKLEAAHILFLRSCYGWEVKSRIQS-----LNLLMDVLCQCRRSDLALHVFQEMDFQG-CYPDRESYHILMK 194 (504)
Q Consensus 122 -l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~ 194 (504)
++.|.-.+|+-.|.-+-+++..+.--.|+... |+.++......+.+=.+-+.|+.+-..| +.-|+.-|...+.
T Consensus 177 QmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~ 256 (439)
T KOG1498|consen 177 QMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLR 256 (439)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhh
Q ss_pred H
Q 043204 195 G 195 (504)
Q Consensus 195 ~ 195 (504)
.
T Consensus 257 ~ 257 (439)
T KOG1498|consen 257 S 257 (439)
T ss_pred h
No 412
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.41 E-value=62 Score=23.38 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043204 369 VYNILLKGLCDAGNSAVAVMYLKKMSK 395 (504)
Q Consensus 369 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 395 (504)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 345555555555556666555555544
No 413
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.64 E-value=13 Score=27.78 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=21.5
Q ss_pred hcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHH
Q 043204 415 RDGRFLEASRVLEEMLIRSYWPCVETYNVLIRG 447 (504)
Q Consensus 415 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (504)
+.|.-.+|.++|++|.+.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34666778888888888886665 36666654
No 414
>PRK10941 hypothetical protein; Provisional
Probab=59.40 E-value=1.2e+02 Score=26.41 Aligned_cols=74 Identities=15% Similarity=-0.045 Sum_probs=33.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 043204 337 KLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVDG 412 (504)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 412 (504)
+-.+|.+.++++.|+.+.+.++.-. +.+..-+.--.-.|.+.|.+..|..=++...+++.-.|+.......+..
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3344555555555555555433322 1222223323333555555555555555555543444444444444433
No 415
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=59.16 E-value=1.3e+02 Score=26.56 Aligned_cols=12 Identities=17% Similarity=0.033 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHH
Q 043204 201 RLNEATHLLYSM 212 (504)
Q Consensus 201 ~~~~a~~~~~~~ 212 (504)
+..+|..+|++.
T Consensus 128 d~~~A~~~~~~A 139 (292)
T COG0790 128 DLVKALKYYEKA 139 (292)
T ss_pred CHHHHHHHHHHH
Confidence 555566665555
No 416
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=58.91 E-value=1.3e+02 Score=26.53 Aligned_cols=68 Identities=16% Similarity=0.313 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCChhHHHHHH-HHHHHCCCCcchhhHHHHHHHHhcCCCHHH
Q 043204 275 EDIEGAKSLINEALIRGGIPSLA----SYSAMAIDLYNEGRIVEGDKVL-DEMRTKGFWPSLVMYEAKLAALFKDGMVDE 349 (504)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (504)
..+++.....++-.+.+-.|+.. .|..++++- .|.+-.++. ++..+ ...+|..|+.+++..|+.+-
T Consensus 269 ~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsav----eWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 269 DPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAV----EWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSEL 339 (412)
T ss_pred CCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHH----hhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHH
Confidence 34555555565555555556654 455555443 233222221 22222 44568889999999998776
Q ss_pred HH
Q 043204 350 AL 351 (504)
Q Consensus 350 a~ 351 (504)
.+
T Consensus 340 ~L 341 (412)
T KOG2297|consen 340 EL 341 (412)
T ss_pred HH
Confidence 53
No 417
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.65 E-value=1.1e+02 Score=25.60 Aligned_cols=16 Identities=13% Similarity=0.192 Sum_probs=9.4
Q ss_pred CChhHHHHHHHHHHHC
Q 043204 310 GRIVEGDKVLDEMRTK 325 (504)
Q Consensus 310 ~~~~~a~~~~~~~~~~ 325 (504)
|+.++|.+.|..+...
T Consensus 179 g~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 179 GNYDEAKRWFSRVIGS 194 (214)
T ss_pred CCHHHHHHHHHHHHcC
Confidence 6666666666655554
No 418
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.52 E-value=1.7e+02 Score=27.82 Aligned_cols=107 Identities=13% Similarity=-0.014 Sum_probs=58.0
Q ss_pred HhcCCCHHHHHHHHHHHHh---cCCCCccH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHh------cCCCCch---
Q 043204 341 LFKDGMVDEALEVIEEEMV---KGTFVPTV-----RVYNILLKGLCDAGNSAVAVMYLKKMSKQ------VGCVANG--- 403 (504)
Q Consensus 341 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~p~~--- 403 (504)
+.-.|++.+|.+++.. .. ..|...+. ..||.+.-...+.|.+..+..+|.+..+. .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~-sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLV-SNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHhcchHHHHHHHHh-cccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3446777777776643 11 11111111 12244443444556666665555555431 1444422
Q ss_pred --------hhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHc
Q 043204 404 --------ETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCS 450 (504)
Q Consensus 404 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (504)
.+||+ .-.|...|++-.|.+.|.+.... +..++..|-.+..+|..
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 23332 23466778888888888877764 45677888888887764
No 419
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=58.44 E-value=24 Score=19.15 Aligned_cols=33 Identities=3% Similarity=0.142 Sum_probs=18.7
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHH
Q 043204 460 WLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTL 497 (504)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 497 (504)
.++++.+.|+..+ ..+.++...++|.+.|..++
T Consensus 4 ~v~~L~~mGf~~~-----~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 4 KIDQLLEMGFSRE-----EALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHcCCCHH-----HHHHHHHHhCCCHHHHHHHH
Confidence 4455666676444 23444455566788776653
No 420
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.43 E-value=1.4e+02 Score=26.98 Aligned_cols=241 Identities=11% Similarity=0.007 Sum_probs=0.0
Q ss_pred CCcCCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCcc-
Q 043204 1 MSVRWPRLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECK- 79 (504)
Q Consensus 1 ~p~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 79 (504)
+|..-|++.+.-.++.-|....+-++-..+-..+... .+.+..++.+.+.+....++..+....-.+.+
T Consensus 68 ~~~~~~~~~~li~~~~~FV~~~n~eqlr~as~~f~~l----------c~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~ 137 (422)
T KOG2582|consen 68 TPSANPDPETLIELLNDFVDENNGEQLRLASEIFFPL----------CHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG 137 (422)
T ss_pred CcccCCCHHHHHHHHHHHHHhcChHHHhhHHHHHHHH----------HHHHHHHHHhcCCccccchHHHHHHHHhccCcc
Q ss_pred --HHHHHHHHHHHHhcCChhHHHHHHH----HhhhCCCCccHHHHHHHHH----HHHhcchHHHHHHHHHHhhcCCCCcc
Q 043204 80 --DSVFATAIRTYARAGQLNEAVSLFK----NLSQFNCVNWTQSFNTLLK----EMVKESKLEAAHILFLRSCYGWEVKS 149 (504)
Q Consensus 80 --~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (504)
.....-++..+.+.+++..++..++ ++...+...+...+....- .|...++++.|..+|+.....+....
T Consensus 138 qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~v 217 (422)
T KOG2582|consen 138 QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTTPAMAV 217 (422)
T ss_pred chhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhcchhHH
Q ss_pred hHHH----HHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH-------------------HhcCCHHHHH
Q 043204 150 RIQS----LNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGL-------------------CNDRRLNEAT 206 (504)
Q Consensus 150 ~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-------------------~~~~~~~~a~ 206 (504)
+... +.-++-...-.|+....-+.=......-.+|=...|..+.++| .+.++..-+.
T Consensus 218 s~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k 297 (422)
T KOG2582|consen 218 SHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAK 297 (422)
T ss_pred HHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHH
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHH----HHHHHhcCchhHHHHHHHHHHHcC
Q 043204 207 HLLYSMFWRISQKGSGEDIVIYRTL----LFALCDQGKIQDAMQILEKILRKG 255 (504)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~ 255 (504)
..+..+ ....+..=..||.+| |....+.+..++|.+..-+|.+.|
T Consensus 298 ~av~sl----~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 298 QAVSSL----YKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
No 421
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.31 E-value=1.7e+02 Score=27.78 Aligned_cols=300 Identities=11% Similarity=0.024 Sum_probs=151.4
Q ss_pred hcCChhHHHHHHHHHHhc---CCCC-CcchhcHHHHHHHHhccC-ChhHHHHHHHHhhcCCCCccH---HHHHHHHHHHH
Q 043204 20 KQKSPLTALKIFKEAKEK---YPNY-RHNGPVYASMIGILSESN-RITEMKEVIDQMKGDSCECKD---SVFATAIRTYA 91 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~---~p~~-~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 91 (504)
-.++.+.|..-++++... -|.+ ...-.+++.|...+.... .+..+..++++..+....... .....++..+.
T Consensus 59 yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~ 138 (629)
T KOG2300|consen 59 YTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHI 138 (629)
T ss_pred HhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHh
Confidence 356778887777766543 2222 112245666667776665 788888888888764311112 22456677788
Q ss_pred hcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHH---------hcchHHHHHHHHHHhhcCCCCcch----HHHH--HH
Q 043204 92 RAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMV---------KESKLEAAHILFLRSCYGWEVKSR----IQSL--NL 156 (504)
Q Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~----~~~~--~~ 156 (504)
-..|+..|.+++.--.+.. .+--..|..++..+. +..++..+.....++.+.....|. ...| +.
T Consensus 139 idkD~~sA~elLavga~sA-d~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~l 217 (629)
T KOG2300|consen 139 IDKDFPSALELLAVGAESA-DHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVL 217 (629)
T ss_pred hhccchhHHHHHhcccccc-chhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 8899999999865332221 111223333222222 223445555555556544322221 1111 22
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhC---CC------------CCCHhhHHHHHH----HH---------HhcCCHHHHHHH
Q 043204 157 LMDVLCQCRRSDLALHVFQEMDFQ---GC------------YPDRESYHILMK----GL---------CNDRRLNEATHL 208 (504)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~---~~------------~p~~~~~~~l~~----~~---------~~~~~~~~a~~~ 208 (504)
=+..|.-.|+...+...++++.+. +. .|.+..+..+.+ ++ ...|-+++|.++
T Consensus 218 ql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~ 297 (629)
T KOG2300|consen 218 QLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKY 297 (629)
T ss_pred HHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHH
Confidence 233455678887777777766542 11 122222222211 11 134556666666
Q ss_pred HHHHHHHHhhCCCCc-CHHH--------HHHHHHHHHhcCchhHHHHHHHHHHHcCCCCC--------cchhhhhhcccc
Q 043204 209 LYSMFWRISQKGSGE-DIVI--------YRTLLFALCDQGKIQDAMQILEKILRKGLKAP--------KSRRHRIDLCPC 271 (504)
Q Consensus 209 ~~~~~~~~~~~~~~~-~~~~--------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 271 (504)
-+++.....+....+ .... ...++-+-.-.|+..+|++-+.+|.+-....+ ......++...|
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 665543322222222 2222 22233333456899999998888876432222 223344555666
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCChhHHHHHHH
Q 043204 272 NDGEDIEGAKSLINEALIRGGIPSLASYS--AMAIDLYNEGRIVEGDKVLD 320 (504)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~ 320 (504)
...+.++.|+.-|....+.-...|...+. .+...|.+.|+.+.-.++++
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld 428 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD 428 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH
Confidence 67777777777776666543322332222 22334445455444444433
No 422
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.18 E-value=76 Score=23.71 Aligned_cols=43 Identities=9% Similarity=-0.035 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCcCCC-cchHHHHHHHHHccCCHHHHHHHHHH
Q 043204 421 EASRVLEEMLIRSYWPC-VETYNVLIRGLCSIGKQYEAVMWLEE 463 (504)
Q Consensus 421 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 463 (504)
.+.++|..|..+|+.-. +..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788888887765433 44566667777778888888887765
No 423
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=57.14 E-value=81 Score=26.36 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=63.0
Q ss_pred CCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCC-CccHHHH--HHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHH
Q 043204 41 YRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSC-ECKDSVF--ATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQS 117 (504)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 117 (504)
+.+...-+|.|+--|.-...+.+|.+.|..-..... ..+...+ ..-|+..+..|+.+.|++..+.+-..-+..+...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 345666677777666666666777776654433221 1234443 4456777889999999998887654333333323
Q ss_pred HHHHHH----HHHhcchHHHHHHHHHHhhc
Q 043204 118 FNTLLK----EMVKESKLEAAHILFLRSCY 143 (504)
Q Consensus 118 ~~~ll~----~~~~~~~~~~a~~~~~~~~~ 143 (504)
+-.|.. -..+.|..++|++..+.-..
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 322222 35678889999998877653
No 424
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=56.89 E-value=2.2e+02 Score=28.70 Aligned_cols=407 Identities=12% Similarity=0.031 Sum_probs=0.0
Q ss_pred CCcCCCCCCCchHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccH
Q 043204 1 MSVRWPRLLTPTYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKD 80 (504)
Q Consensus 1 ~p~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (504)
|+.+.||-.. +.+.|.-..+++.|.+++++..+. +......-|.......-..+-+....+.....-..+.
T Consensus 206 ~~~~~PDy~~---vc~c~v~Ldd~~~va~ll~kL~~e------~~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de 276 (929)
T KOG2062|consen 206 LKLPSPDYFS---VCQCYVFLDDAEAVADLLEKLVKE------DDLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDE 276 (929)
T ss_pred ccCCCCCeee---eeeeeEEcCCHHHHHHHHHHHHhc------chhhhHHHHHHHHhhccCHHHHHHHHHHccccccccc
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q 043204 81 SVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDV 160 (504)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (504)
.....+++.+.- +...+++.+..-..-..|....+..-+.. +..-...|.-+-+.++.- |...|...-+.+=..
T Consensus 277 ~p~~kii~ILSG----e~tik~~l~FL~~~N~tD~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~-GTT~D~FlR~NL~Wl 350 (929)
T KOG2062|consen 277 KPMEKIISILSG----EETIKLYLQFLLRHNNTDLLILEEIKESV-RNSVCHTATLIANAFMHA-GTTSDTFLRNNLDWL 350 (929)
T ss_pred ChHHHHHHHhcC----chHHHHHHHHHHHcCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhc-CCcchHHHHhchhHH
Q ss_pred ----------------HhhcCCHHHHHHHHHHhhhCCCCCCHhhH----HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC
Q 043204 161 ----------------LCQCRRSDLALHVFQEMDFQGCYPDRESY----HILMKGLCNDRRLNEATHLLYSMFWRISQKG 220 (504)
Q Consensus 161 ----------------~~~~~~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 220 (504)
....|+..++.+++.-..-. -.+....| ..+.-++.+.|......+++... .+..
T Consensus 351 skAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~-~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~----Lk~~ 425 (929)
T KOG2062|consen 351 SKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPK-EAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQ----LKTA 425 (929)
T ss_pred hhcchHhhhhhhhhcceeeccccchHHHHhhhhCCc-cCCCCCCccccchhhhhhccccCcCccHHHHHHHH----HHhc
Q ss_pred CCcCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhH
Q 043204 221 SGEDIVIYRTLLFALCDQGK-IQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASY 299 (504)
Q Consensus 221 ~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 299 (504)
-.+....-..|.-+....|. -.+..+-+++....+........-..+.-......+.+...+++.-..+.... ...--
T Consensus 426 ~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHe-ki~RG 504 (929)
T KOG2062|consen 426 ENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHE-KIIRG 504 (929)
T ss_pred cchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHH-HHHHH
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH-CCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 043204 300 SAMAIDLYNEGRIVEGDKVLDEMRT-KGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLC 378 (504)
Q Consensus 300 ~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (504)
-.+--++..-|+.++|..+.++|.. .++-.-..-.-++..+|+-.|+.....+++. ..-.....|+.-+..+.-++.
T Consensus 505 l~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh--~aVsD~nDDVrRaAVialGFV 582 (929)
T KOG2062|consen 505 LAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLH--VAVSDVNDDVRRAAVIALGFV 582 (929)
T ss_pred HHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhc--ccccccchHHHHHHHHHheee
Q ss_pred hcCChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 379 DAGNSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
-..+++....+.+-+.+.++.....-+--+|.-+|+-.|+ .+|..+++-|..
T Consensus 583 l~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 583 LFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred EecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
No 425
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.29 E-value=27 Score=30.45 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=19.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043204 441 YNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVW 476 (504)
Q Consensus 441 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 476 (504)
|+.-|....+.||+++|+.++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345555556666666666666666655554333333
No 426
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=55.65 E-value=72 Score=28.60 Aligned_cols=63 Identities=8% Similarity=0.155 Sum_probs=38.8
Q ss_pred hHHHHHHHHhhcCCCCccHH----HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHH
Q 043204 62 TEMKEVIDQMKGDSCECKDS----VFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMV 126 (504)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 126 (504)
+++..++..+.+. -|+.. .|..+++.....|.++.++.+|++....|..|-...-..+++.+.
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4566666666554 34432 366667777777777777777777777777765555555555544
No 427
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=55.43 E-value=2e+02 Score=30.66 Aligned_cols=200 Identities=13% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHhccCChhHHHHHHHHhh---cCCCCccHHHHHHHHHHHHhc-CChhHHHHHHHHhhhCCCCccHHHHHH-----
Q 043204 50 SMIGILSESNRITEMKEVIDQMK---GDSCECKDSVFATAIRTYARA-GQLNEAVSLFKNLSQFNCVNWTQSFNT----- 120 (504)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 120 (504)
..++.+...+++.+|..+.++-. ..=+.-++..|..=+..+.++ ++.+-.-..+..+.+.++.-+.+.-..
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~~~~~~~ 778 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDTYPPSSE 778 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccccccccc
Q ss_pred -----HHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcC--CHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043204 121 -----LLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCR--RSDLALHVFQEMDFQGCYPDRESYHILM 193 (504)
Q Consensus 121 -----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 193 (504)
-.......+++...-..+...... ..-...-...++.+|++.+ +++.|+.+..++.+.+..--......|+
T Consensus 779 ~~~~~~~~~~~~~~KVn~ICdair~~l~~--~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~ 856 (928)
T PF04762_consen 779 AQPNSNSSTASSESKVNKICDAIRKALEK--PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLC 856 (928)
T ss_pred cccccccCCCccccHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHhe
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHh-------------cCchhHHHHHHHHH
Q 043204 194 KGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCD-------------QGKIQDAMQILEKI 251 (504)
Q Consensus 194 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~ 251 (504)
-..--..-++.|+.+|+-=+..+....-..|+.-|-..++-+-+ .+++++|++-+.++
T Consensus 857 fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 857 FLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred eeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhh
No 428
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.60 E-value=68 Score=22.02 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=5.9
Q ss_pred chHHHHHHHHHHhh
Q 043204 129 SKLEAAHILFLRSC 142 (504)
Q Consensus 129 ~~~~~a~~~~~~~~ 142 (504)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444443
No 429
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.12 E-value=1.9e+02 Score=27.10 Aligned_cols=208 Identities=13% Similarity=0.025 Sum_probs=97.6
Q ss_pred HHHhcCchhHHHHHHHHHHHcCCCCCcch-hhhhhccccCCCCChHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcC
Q 043204 234 ALCDQGKIQDAMQILEKILRKGLKAPKSR-RHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLA--SYSAMAIDLYNEG 310 (504)
Q Consensus 234 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~ 310 (504)
..+..|+.+-+ +.+.+.|..+.... .....+..+...|+.+- .+.+.+.|..|+.. ...+.+...+..|
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34456776544 44445676554322 11112333445566553 44445555554432 1223445555667
Q ss_pred ChhHHHHHHHHHHHCCCCcc----hhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHH---HHHHHHHHHHhcCCh
Q 043204 311 RIVEGDKVLDEMRTKGFWPS----LVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVR---VYNILLKGLCDAGNS 383 (504)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~ 383 (504)
+.+.+..++ +.|...+ ..-. +.+...+..|+.+-+..++ +.|..|+.. -.+ .+...+..|+.
T Consensus 80 ~~~~v~~Ll----~~~~~~~~~~~~~g~-tpL~~A~~~~~~~iv~~Ll-----~~gad~~~~~~~g~t-pLh~A~~~~~~ 148 (413)
T PHA02875 80 DVKAVEELL----DLGKFADDVFYKDGM-TPLHLATILKKLDIMKLLI-----ARGADPDIPNTDKFS-PLHLAVMMGDI 148 (413)
T ss_pred CHHHHHHHH----HcCCcccccccCCCC-CHHHHHHHhCCHHHHHHHH-----hCCCCCCCCCCCCCC-HHHHHHHcCCH
Confidence 776654444 4443221 1112 2334444566665444333 334444322 222 33344567776
Q ss_pred HHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcch---HHHHHHHHHccCCHHHH
Q 043204 384 AVAVMYLKKMSKQVGCVAN---GETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVET---YNVLIRGLCSIGKQYEA 457 (504)
Q Consensus 384 ~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a 457 (504)
+-+..+++ . |..++ ..-.+.|. ..+..|+.+ +++.+.+.|..++... ..+.+...+..|+.
T Consensus 149 ~~v~~Ll~----~-g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~--- 215 (413)
T PHA02875 149 KGIELLID----H-KACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKI--- 215 (413)
T ss_pred HHHHHHHh----c-CCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH---
Confidence 65444443 3 44333 22333443 334456654 3444556665554322 12444444455665
Q ss_pred HHHHHHHHHcCCCCCHH
Q 043204 458 VMWLEEMISQAKLPDIS 474 (504)
Q Consensus 458 ~~~~~~~~~~~~~p~~~ 474 (504)
++.+-+.+.|..++..
T Consensus 216 -~iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 216 -DIVRLFIKRGADCNIM 231 (413)
T ss_pred -HHHHHHHHCCcCcchH
Confidence 3555666678777753
No 430
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=53.82 E-value=1.3e+02 Score=25.16 Aligned_cols=109 Identities=14% Similarity=0.044 Sum_probs=61.2
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCc---cHHHH--HHHHHHHHhcchHHHHHHHHH
Q 043204 65 KEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVN---WTQSF--NTLLKEMVKESKLEAAHILFL 139 (504)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~ll~~~~~~~~~~~a~~~~~ 139 (504)
.++-+++.+. .+...-+|.|+--|.-...+.+|-..|.. +.++.+ +..++ ..-|......|+.+.|.....
T Consensus 13 ~~w~~~~~~~--~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in 88 (228)
T KOG2659|consen 13 EEWEEQLMKV--SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVN 88 (228)
T ss_pred hhhHHHHhcc--CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHH
Confidence 3444444443 34555566666666665556666666643 333333 33333 455777788899999988888
Q ss_pred HhhcCCCCcchHHHHHHH----HHHHhhcCCHHHHHHHHHHhh
Q 043204 140 RSCYGWEVKSRIQSLNLL----MDVLCQCRRSDLALHVFQEMD 178 (504)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~ 178 (504)
++... -+..|...+-.| +--..+.|..++|+++.+.=.
T Consensus 89 ~l~Pe-iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 89 QLNPE-ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HhChH-HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 77532 122222111111 123467788888888877544
No 431
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=53.60 E-value=29 Score=22.21 Aligned_cols=45 Identities=13% Similarity=0.266 Sum_probs=18.8
Q ss_pred hhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH
Q 043204 45 GPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY 90 (504)
Q Consensus 45 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (504)
...++.++..+++..-.++++..+.+....| ..+..+|.--++.+
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~L 52 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSL 52 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3344444444444444444444444444444 23333333333333
No 432
>PRK09687 putative lyase; Provisional
Probab=52.81 E-value=1.6e+02 Score=25.86 Aligned_cols=135 Identities=16% Similarity=0.081 Sum_probs=85.5
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhcCCCCchhhHHH
Q 043204 330 SLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAG-NSAVAVMYLKKMSKQVGCVANGETYGI 408 (504)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~ 408 (504)
+..+-...+.++.+.++. .+...+-..+.. ++...-...+.++.+.+ +...+...+..+... ++..+-..
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d----~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~ 211 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLKD----PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD----KNEEIRIE 211 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhcC----CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC----CChHHHHH
Confidence 455555667777777764 455665553442 44455555555666543 244566666666543 56667777
Q ss_pred HHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043204 409 LVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVAS 482 (504)
Q Consensus 409 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 482 (504)
.+.++.+.|+ ..|...+-+..+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+.+
T Consensus 212 A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 212 AIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 7888888887 45666666666543 2 234677888888885 688888888753 4577776666665
No 433
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=52.67 E-value=75 Score=21.99 Aligned_cols=53 Identities=13% Similarity=-0.032 Sum_probs=31.1
Q ss_pred CccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHhcc
Q 043204 77 ECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVN-WTQSFNTLLKEMVKES 129 (504)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~ 129 (504)
|.|...-..+...+...|+++.|++.+-.+.+.+... +...-..++..+.-.|
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 5566777778888888888888888888877654332 2233334444443333
No 434
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=52.28 E-value=96 Score=23.92 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=34.8
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC
Q 043204 173 VFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQG 239 (504)
Q Consensus 173 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 239 (504)
+...+.+.|++++.. -..++..+...++.-.|.++++.+ .+.+...+..|....+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l----~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEEL----REEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHH----HHhCCCCCHhHHHHHHHHHHHCC
Confidence 344555566665543 344556666666667777777777 55555555444444445554444
No 435
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.04 E-value=17 Score=27.13 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=23.6
Q ss_pred HhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 043204 91 ARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKE 124 (504)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 124 (504)
...|.-..|-.+|..|.+.|.+|| .|+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 344677788899999999998887 45666654
No 436
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=51.67 E-value=1.8e+02 Score=26.19 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHH-HHHHHHHHHHhcCCCCchhhHHHHHHH
Q 043204 334 YEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAV-AVMYLKKMSKQVGCVANGETYGILVDG 412 (504)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~ 412 (504)
...+.+.+++.++.+.+..+-+. +.. -|..+. .++..++-...-.+. +..+.+.+.. .||......++++
T Consensus 169 LQGIAD~~aRl~~~~~~~~l~~a-l~~---lP~~vl-~aL~~~LEh~~l~~~l~~~l~~~~~~----~~d~~~~~a~lRA 239 (340)
T PF12069_consen 169 LQGIADICARLDQEDNAQLLRKA-LPH---LPPEVL-YALCGCLEHQPLPDKLAEALLERLEQ----APDLELLSALLRA 239 (340)
T ss_pred hhHHHHHHHHhcccchHHHHHHH-Hhh---CChHHH-HHHHHHhcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHH
Confidence 34577788888887776655554 554 344433 344444433333333 3334444332 2788888888888
Q ss_pred HhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHH-HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 043204 413 LCRDGRFLEASRVLEEMLIRSYWPCVETYNVLI-RGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVC 484 (504)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 484 (504)
.+...........+....+.....+......+. ++.....+.+....+++++... +|...|+.+..=+.
T Consensus 240 ls~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~---~~~~lF~qlfaDLv 309 (340)
T PF12069_consen 240 LSSAPASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQ---DDQALFNQLFADLV 309 (340)
T ss_pred HcCCCchhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcc---cHHHHHHHHHHHHH
Confidence 887766666666567776653333333333322 2233345677777777777633 44666666665433
No 437
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.63 E-value=2.3e+02 Score=27.26 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=21.7
Q ss_pred chhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCC
Q 043204 402 NGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPC 437 (504)
Q Consensus 402 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 437 (504)
+...+..++.+....+....|..+++++.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 344455555555554455677777777777775443
No 438
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.32 E-value=3e+02 Score=28.50 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=34.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhh
Q 043204 14 LSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMK 72 (504)
Q Consensus 14 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 72 (504)
+=..|...|++++|+++-+.-... -..++..-...|.+.+++..|.+++.++.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~------le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDA------LETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHH------HHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 446778888888888765433111 11234444567777888888888887773
No 439
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=50.75 E-value=3.2e+02 Score=28.67 Aligned_cols=69 Identities=17% Similarity=0.067 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC
Q 043204 168 DLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQG 239 (504)
Q Consensus 168 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 239 (504)
+.-.+.|.++...--.-|..++..-...+...|++-.+.+++.++. .+.+-.++...|..++..+...|
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kli---ee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLI---EENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHH---HhccccchhHHHHHHHHHHHHhC
Confidence 3344444444432112355556555566666777777777777764 33444555555555555444443
No 440
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.74 E-value=2e+02 Score=26.41 Aligned_cols=116 Identities=9% Similarity=0.099 Sum_probs=75.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhc-------CCC----------------
Q 043204 20 KQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKG-------DSC---------------- 76 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~---------------- 76 (504)
..++++.-..++ +.+|- -+.++..+-..+.++|+.+.|.+++++..- ..+
T Consensus 22 ~~~Dp~~l~~ll----~~~Py---HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~ 94 (360)
T PF04910_consen 22 QSHDPNALINLL----QKNPY---HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDY 94 (360)
T ss_pred HccCHHHHHHHH----HHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCC
Confidence 344555444443 33444 566777777888889999888888777531 111
Q ss_pred --CccHHHHHHH---HHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHH-hcchHHHHHHHHHHhh
Q 043204 77 --ECKDSVFATA---IRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMV-KESKLEAAHILFLRSC 142 (504)
Q Consensus 77 --~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~ 142 (504)
.-|...|.++ |..+.+.|-+..|.++.+-+...++.-|+.....+|+.|+ +.++++-.+.+.+...
T Consensus 95 ~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 95 RRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred ccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 1233344333 4566788888899988888888877666666666677665 5677777777776654
No 441
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=50.53 E-value=53 Score=30.69 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=80.3
Q ss_pred CChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhc-----CCCCc---cHHHHHHHHHHH----
Q 043204 310 GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVK-----GTFVP---TVRVYNILLKGL---- 377 (504)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~~~l~~~~---- 377 (504)
..+++-+++++.+.+.|- ......-+++|.+.+++++|...+++.... +|++. ...+...++...
T Consensus 68 ~~~~e~i~lL~~l~~~g~---ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEGG---ADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHccC---CCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 456777888888888752 224455689999999999999998874432 22221 122223333322
Q ss_pred -HhcCChHHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHhhcCcHHHHHHHHH-------HHHhcCcCCCcchHHHHHH
Q 043204 378 -CDAGNSAVAVMYLKKMSKQVGCVAN---GETYGILVDGLCRDGRFLEASRVLE-------EMLIRSYWPCVETYNVLIR 446 (504)
Q Consensus 378 -~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~l~~ 446 (504)
.+.|. ..+..+++.+... |+... ..+|+. -|.+.=-++++...|+ ...+.|+..|..+|..|..
T Consensus 145 QvRHGt-pDarlL~e~~~a~-G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtg 219 (480)
T TIGR01503 145 QIRHGT-PDARLLAEIILAG-GFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTG 219 (480)
T ss_pred eccCCC-CcHHHHHHHHHHc-CCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCC
Confidence 12332 2355556665554 55432 234432 2444334455544444 3345677777777764421
Q ss_pred HHHccCCHHHHHHHHHHHH--HcCCC
Q 043204 447 GLCSIGKQYEAVMWLEEMI--SQAKL 470 (504)
Q Consensus 447 ~~~~~g~~~~a~~~~~~~~--~~~~~ 470 (504)
.+ --=-..-|+.+++-+. ++|++
T Consensus 220 tL-vPPsisiav~ilE~Lla~eqGVk 244 (480)
T TIGR01503 220 TL-VPPSISNAIGIIEGLLAAEQGVK 244 (480)
T ss_pred Cc-cChHHHHHHHHHHHHHHHHcCCe
Confidence 11 1112344666666665 34544
No 442
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.08 E-value=1.8e+02 Score=25.74 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=18.0
Q ss_pred HHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 043204 317 KVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEE 356 (504)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (504)
++++.+.+.++.|.-..+.-+.-.+.+.=.+..++.+|+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDs 303 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDS 303 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHH
Confidence 3444444444444444444444444444444444444444
No 443
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=49.97 E-value=59 Score=20.57 Aligned_cols=15 Identities=53% Similarity=0.842 Sum_probs=6.5
Q ss_pred cCcHHHHHHHHHHHH
Q 043204 416 DGRFLEASRVLEEML 430 (504)
Q Consensus 416 ~g~~~~A~~~~~~~~ 430 (504)
.|++=+|.++++.+-
T Consensus 12 ~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 12 AGDFFEAHEVLEELW 26 (62)
T ss_dssp TT-HHHHHHHHHHHC
T ss_pred CCCHHHhHHHHHHHH
Confidence 444444444444443
No 444
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=49.85 E-value=86 Score=21.82 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=8.5
Q ss_pred HHhcCChHHHHHHHHHHH
Q 043204 377 LCDAGNSAVAVMYLKKMS 394 (504)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~ 394 (504)
....|++++|...+++..
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 334455555555544444
No 445
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=49.11 E-value=94 Score=22.06 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=26.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcC
Q 043204 195 GLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKG 255 (504)
Q Consensus 195 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 255 (504)
.+.+.|++++|..+.+.. ..||...|.+|.. .+.|..+.+..-+..+..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~--------~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL--------CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC--------CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 345666666666654322 4566666655543 24455555555555554443
No 446
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.28 E-value=88 Score=21.49 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=6.2
Q ss_pred CCCHHHHHHHHHH
Q 043204 344 DGMVDEALEVIEE 356 (504)
Q Consensus 344 ~~~~~~a~~~~~~ 356 (504)
.|+.+.|.+++..
T Consensus 49 ~g~~~~ar~LL~~ 61 (88)
T cd08819 49 HGNESGARELLKR 61 (88)
T ss_pred cCcHHHHHHHHHH
Confidence 3444455554444
No 447
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=48.18 E-value=46 Score=18.18 Aligned_cols=33 Identities=3% Similarity=0.032 Sum_probs=18.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHH
Q 043204 460 WLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTL 497 (504)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 497 (504)
.++++.+.|+.++ ....++...+++++.|..++
T Consensus 5 ~v~~L~~mGf~~~-----~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 5 KVQQLMEMGFSRE-----QAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHTS-HH-----HHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHcCCCHH-----HHHHHHHHcCCCHHHHHHhC
Confidence 3445555576444 23444555677788887764
No 448
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.70 E-value=31 Score=22.06 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=23.9
Q ss_pred CchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHc
Q 043204 401 ANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCS 450 (504)
Q Consensus 401 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 450 (504)
|....++.++..+++..-.+++...+.++...|. .+..+|---++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3444555555555555555566666666555542 333444444444433
No 449
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.26 E-value=2.4e+02 Score=26.21 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=27.7
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHh--ccCChhHHHHHHHHhhcC
Q 043204 18 IKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILS--ESNRITEMKEVIDQMKGD 74 (504)
Q Consensus 18 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 74 (504)
+.+.+++..|.++|+.+.++.|+-.. ...+..+..+|. ..-++++|.+.|+.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566667777777666665232111 122333333332 234556666666665543
No 450
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=46.96 E-value=3.3e+02 Score=27.74 Aligned_cols=86 Identities=12% Similarity=0.070 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC---CCC----------chhhHHHHHH
Q 043204 345 GMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVG---CVA----------NGETYGILVD 411 (504)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~p----------~~~~~~~l~~ 411 (504)
=..++....+...+...|+..+......++.. ..|+...++.+++++... + +.. +......|++
T Consensus 178 Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~--A~GslRdAlnLLDqaia~-g~g~It~e~V~~lLG~~d~~~If~Lld 254 (709)
T PRK08691 178 MTAQQVADHLAHVLDSEKIAYEPPALQLLGRA--AAGSMRDALSLLDQAIAL-GSGKVAENDVRQMIGAVDKQYLYELLT 254 (709)
T ss_pred CCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH--hCCCHHHHHHHHHHHHHh-cCCCcCHHHHHHHHcccCHHHHHHHHH
Confidence 34566677777767777877777777776654 369999999999887653 2 111 1112233444
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCc
Q 043204 412 GLCRDGRFLEASRVLEEMLIRSY 434 (504)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~ 434 (504)
++. .++...++.+++++...|+
T Consensus 255 AL~-~~d~~~al~~l~~L~~~G~ 276 (709)
T PRK08691 255 GII-NQDGAALLAKAQEMAACAV 276 (709)
T ss_pred HHH-cCCHHHHHHHHHHHHHhCC
Confidence 443 3677777777777777664
No 451
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.64 E-value=2.4e+02 Score=26.15 Aligned_cols=54 Identities=7% Similarity=-0.007 Sum_probs=31.8
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCccHH--HHHHHHHHHH--hcchHHHHHHHHHHhhc
Q 043204 89 TYARAGQLNEAVSLFKNLSQFNCVNWTQ--SFNTLLKEMV--KESKLEAAHILFLRSCY 143 (504)
Q Consensus 89 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 143 (504)
.+.+.+++..|.++|+.+.+. ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344667777777777777765 444333 3344444443 34556677777776654
No 452
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.42 E-value=1.6e+02 Score=23.84 Aligned_cols=38 Identities=13% Similarity=0.015 Sum_probs=20.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 043204 446 RGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCN 486 (504)
Q Consensus 446 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 486 (504)
-.|.+.|.+++|.+++++... .|+......-+....+.
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHc
Confidence 356666666666666666653 34444444444433333
No 453
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.36 E-value=1.8e+02 Score=24.60 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=33.4
Q ss_pred cCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC-----------CCchhhHHHHHHHHhhcCcHHHHHHHHHH
Q 043204 360 KGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGC-----------VANGETYGILVDGLCRDGRFLEASRVLEE 428 (504)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 428 (504)
..+++-+..-...++ +...||...|+..++.-...+|. .|.+.....++..|. .+++++|.+++.+
T Consensus 187 ~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~ 263 (333)
T KOG0991|consen 187 AEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAE 263 (333)
T ss_pred HhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHH
Confidence 333343433444433 34456666665555554433221 233333344444333 2355555555555
Q ss_pred HHhcCcCC
Q 043204 429 MLIRSYWP 436 (504)
Q Consensus 429 ~~~~~~~~ 436 (504)
+-+.|+.|
T Consensus 264 lw~lgysp 271 (333)
T KOG0991|consen 264 LWKLGYSP 271 (333)
T ss_pred HHHcCCCH
Confidence 55555444
No 454
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=45.89 E-value=3.5e+02 Score=27.78 Aligned_cols=205 Identities=11% Similarity=0.066 Sum_probs=95.9
Q ss_pred chhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHH---HhcCChhHHHHHHHHhhhCCCCccHHHHHH
Q 043204 44 NGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTY---ARAGQLNEAVSLFKNLSQFNCVNWTQSFNT 120 (504)
Q Consensus 44 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (504)
+...+..||..+-..|++++....-..|.+.- +.++..|..-+... ...++...+..+|+.....-..+.. |.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~i--w~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPI--WEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchH--HHH
Confidence 44455666677777777776666666665544 45555554444332 2335566666666665433222221 111
Q ss_pred HHH-------HHHhcchHHHHHHHHHHhhcCCCCcch--HHHHHHH---HHHHhhcCCHHHHHHHHHHhhhCCCCCCHhh
Q 043204 121 LLK-------EMVKESKLEAAHILFLRSCYGWEVKSR--IQSLNLL---MDVLCQCRRSDLALHVFQEMDFQGCYPDRES 188 (504)
Q Consensus 121 ll~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 188 (504)
.+. .+.+.++++....+|.+.....+..-+ ...|... =..|..+-..++...+|..-...+ .|..+
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~~ 266 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDEDT 266 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhhh
Confidence 211 122335566666666666544333222 1112221 122333333455666666555543 23222
Q ss_pred HHHHHHHHH-------hcCCHHHHHHHHHHHH---HHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 189 YHILMKGLC-------NDRRLNEATHLLYSMF---WRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 189 ~~~l~~~~~-------~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
-+.-+.-.. ...+++.+.+-+.... ....+. ..+-...|..++..+.+.|+.-....+++++...
T Consensus 267 ~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 267 RGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred hHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 222111111 1223333333322221 000111 1223456677777778888877777777776554
No 455
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=45.66 E-value=2.2e+02 Score=25.44 Aligned_cols=111 Identities=12% Similarity=-0.030 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhhhCCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchh
Q 043204 167 SDLALHVFQEMDFQGC----YPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQ 242 (504)
Q Consensus 167 ~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 242 (504)
.+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++.. .. ..+......++.+.+...+.+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~----~~---~~~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELY----KN---STSPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHH----HT---TSTHHHHHHHHHHHTT-S-HH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHH----hc---cCCHHHHHHHHHhhhccCCHH
Confidence 5677788888776422 345566666777777777766544444443 32 235677788888888888988
Q ss_pred HHHHHHHHHHHcC-CCCCcchhhhhhcccc-CCCCChHHHHHHHHH
Q 043204 243 DAMQILEKILRKG-LKAPKSRRHRIDLCPC-NDGEDIEGAKSLINE 286 (504)
Q Consensus 243 ~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 286 (504)
...++++.+...+ +.+.+ ...++..+. ......+.+.+.+..
T Consensus 219 ~~~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 219 LLKRLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHHH
Confidence 8889999888854 33222 333333333 444445666666554
No 456
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.20 E-value=2.9e+02 Score=28.67 Aligned_cols=192 Identities=11% Similarity=0.090 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHH
Q 043204 21 QKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAV 100 (504)
Q Consensus 21 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 100 (504)
+.++++.+.+.+...-- | .++|..+.+.|.++-|+...+.=..+ ...+...|+++.|+
T Consensus 606 ~k~ydeVl~lI~ns~Lv--G--------qaiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~al 663 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLV--G--------QAIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVAL 663 (1202)
T ss_pred hhhhHHHHHHHHhcCcc--c--------HHHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHH
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhC
Q 043204 101 SLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQ 180 (504)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (504)
+.-..+ .+..+|..|.....+.|+..-|+..|++.. .|+.|--.|.-.|+.++..++.+....+
T Consensus 664 e~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k----------nfekLsfLYliTgn~eKL~Km~~iae~r 727 (1202)
T KOG0292|consen 664 EAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTK----------NFEKLSFLYLITGNLEKLSKMMKIAEIR 727 (1202)
T ss_pred HHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhh----------hhhheeEEEEEeCCHHHHHHHHHHHHhh
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCc
Q 043204 181 GCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILEKILRKGLKAPK 260 (504)
Q Consensus 181 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 260 (504)
.-.........-.|+.++-..+++.. ..+..--......|.-++|.++.++........++
T Consensus 728 ------~D~~~~~qnalYl~dv~ervkIl~n~-------------g~~~laylta~~~G~~~~ae~l~ee~~~~~~~lP~ 788 (1202)
T KOG0292|consen 728 ------NDATGQFQNALYLGDVKERVKILENG-------------GQLPLAYLTAAAHGLEDQAEKLGEELEKQVPSLPE 788 (1202)
T ss_pred ------hhhHHHHHHHHHhccHHHHHHHHHhc-------------CcccHHHHHHhhcCcHHHHHHHHHhhccccCCCCC
Q ss_pred chhhhhhcc
Q 043204 261 SRRHRIDLC 269 (504)
Q Consensus 261 ~~~~~~~~~ 269 (504)
......++.
T Consensus 789 ~~~~a~ll~ 797 (1202)
T KOG0292|consen 789 VDPNASLLQ 797 (1202)
T ss_pred CCCcccccC
No 457
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=44.90 E-value=2.4e+02 Score=25.53 Aligned_cols=124 Identities=14% Similarity=0.058 Sum_probs=67.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHH-HHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 043204 155 NLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEA-THLLYSMFWRISQKGSGEDIVIYRTLLF 233 (504)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 233 (504)
.-+.+.+++.++.+.+..+-+.+.. -|+. ....|..++-...-.+.. ..+++.+ ... +|......+++
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~---lP~~-vl~aL~~~LEh~~l~~~l~~~l~~~~----~~~---~d~~~~~a~lR 238 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPH---LPPE-VLYALCGCLEHQPLPDKLAEALLERL----EQA---PDLELLSALLR 238 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhh---CChH-HHHHHHHHhcCCCCCHHHHHHHHHHH----HcC---CCHHHHHHHHH
Confidence 3356677777777766666555554 2333 344555555444433332 2333333 333 78888888888
Q ss_pred HHHhcCchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHH
Q 043204 234 ALCDQGKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALI 289 (504)
Q Consensus 234 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 289 (504)
+.+...........+..+.......+......+....+....+.+....+++++..
T Consensus 239 Als~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~ 294 (340)
T PF12069_consen 239 ALSSAPASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQ 294 (340)
T ss_pred HHcCCCchhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHc
Confidence 88877666665565667666544333444444444444444444444444444443
No 458
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.67 E-value=1.6e+02 Score=26.08 Aligned_cols=43 Identities=7% Similarity=0.075 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHh
Q 043204 388 MYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLI 431 (504)
Q Consensus 388 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 431 (504)
++|+.+.++ ++.|....+..+.-.+.+.=.+.+...+|+.+..
T Consensus 264 EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 444445444 5555555555554445555555555555555554
No 459
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=44.62 E-value=2e+02 Score=24.44 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=71.8
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 043204 157 LMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALC 236 (504)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (504)
-+..|.+.-++.-|-...+++.+ ...+-.++++ |.+..+.+--.++.+-. ...++.-+.....+++ +.
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiLR-ysklsd~qiL~Rl~~v~----k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE-----PIQSRCAILR-YSKLSDQQILKRLLEVA----KAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh-----hHHhhhHhhh-hcccCHHHHHHHHHHHH----HHhCCCCCcchHHHhh--hh
Confidence 45556666666555555555543 2223333333 44444433333333322 4455554444444444 45
Q ss_pred hcCchhHHHHHHHHHHHc-CCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHH
Q 043204 237 DQGKIQDAMQILEKILRK-GLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEG 315 (504)
Q Consensus 237 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 315 (504)
..||..+|+..++.-... |.. +. ..+|+- --.|.+.....++..|. .+++++|
T Consensus 204 a~GDMRQalNnLQst~~g~g~V-n~--------------------enVfKv----~d~PhP~~v~~ml~~~~-~~~~~~A 257 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLV-NQ--------------------ENVFKV----CDEPHPLLVKKMLQACL-KRNIDEA 257 (333)
T ss_pred ccchHHHHHHHHHHHhcccccc-ch--------------------hhhhhc----cCCCChHHHHHHHHHHH-hccHHHH
Confidence 678888888777665432 111 00 000100 11366666666665543 4778888
Q ss_pred HHHHHHHHHCCCCcch
Q 043204 316 DKVLDEMRTKGFWPSL 331 (504)
Q Consensus 316 ~~~~~~~~~~~~~~~~ 331 (504)
.+++.++.+.|+.|..
T Consensus 258 ~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 258 LKILAELWKLGYSPED 273 (333)
T ss_pred HHHHHHHHHcCCCHHH
Confidence 8888888888887643
No 460
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=44.56 E-value=73 Score=23.01 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=12.3
Q ss_pred HHHHhccCChhHHHHHHHHhhcCC
Q 043204 52 IGILSESNRITEMKEVIDQMKGDS 75 (504)
Q Consensus 52 ~~~~~~~~~~~~a~~~~~~~~~~~ 75 (504)
++.+.++...++|+++++-|.++|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344444455555555555555555
No 461
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.45 E-value=1.9e+02 Score=28.68 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=57.3
Q ss_pred HHHHHHHHhcchHHHHHHHHHHhhcCCC-CcchHHHHHHHHHHHhhcCCHHH--HHHHH-HHhhhCCCCCCHhhHHHHHH
Q 043204 119 NTLLKEMVKESKLEAAHILFLRSCYGWE-VKSRIQSLNLLMDVLCQCRRSDL--ALHVF-QEMDFQGCYPDRESYHILMK 194 (504)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~--a~~~~-~~~~~~~~~p~~~~~~~l~~ 194 (504)
.+|+.+|...|++..+.++++.+...+. .+.-...+|..|+...+.|.++- ..+-. +.+....+.-|..||..++.
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 3788888999999888888888764322 12224456777888888886543 22222 23334456667778877777
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 043204 195 GLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 195 ~~~~~~~~~~a~~~~~~~ 212 (504)
+...--+-.-..-++.+.
T Consensus 112 ~sln~t~~~l~~pvl~~~ 129 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHEL 129 (1117)
T ss_pred hhcChHhHHhccHHHHHH
Confidence 655533333344444444
No 462
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.25 E-value=2.2e+02 Score=24.95 Aligned_cols=104 Identities=9% Similarity=-0.002 Sum_probs=65.2
Q ss_pred cCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---cCCCCchhhH-HHHHHHHhhcCcHHHHHHHHHHHHhcCcC
Q 043204 360 KGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQ---VGCVANGETY-GILVDGLCRDGRFLEASRVLEEMLIRSYW 435 (504)
Q Consensus 360 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (504)
.+|-.-....+..+...|++.++.+.+.+...+..+. .|.+.|...- .-|.-.|....-+++-++..+.|.++|..
T Consensus 108 dngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 108 DNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred cccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 3344445667888889999999999998887776554 1455554322 22333455555577888888888888753
Q ss_pred CC----cchHHHHHHHHHccCCHHHHHHHHHHHH
Q 043204 436 PC----VETYNVLIRGLCSIGKQYEAVMWLEEMI 465 (504)
Q Consensus 436 ~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 465 (504)
-+ ..+|..+. +....++.+|-.++-...
T Consensus 188 WeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 188 WERRNRYKVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 32 23333332 334457777777777665
No 463
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.98 E-value=3.4e+02 Score=27.00 Aligned_cols=386 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCC-ccHHHHHHHHHHHHhcC----
Q 043204 20 KQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCE-CKDSVFATAIRTYARAG---- 94 (504)
Q Consensus 20 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~---- 94 (504)
+.-+.....+..+.+....+....+..-|+ .+..+.-.|.++.|.+++....... + .....+..++......-
T Consensus 124 Nr~~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~s~~~-~~~~~~~~~~~~~LL~~~P~~~~ 201 (566)
T PF07575_consen 124 NRFHFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRLHSSYQ-SYSLQSAFEALIQLLSSMPRYRP 201 (566)
T ss_dssp HTTS--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-TTTTTT-THHHHHHHHHHHHHHTT------
T ss_pred HHhCCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHhccccc-chhHHHHHHHHHHHHHhCCCccc
Q ss_pred -------ChhHHHHHHHHhhhC----CCCccHHHHHHHHHHHHhc--chHHHHHHHHHHhhcCCCCcchHHHHHHHHHHH
Q 043204 95 -------QLNEAVSLFKNLSQF----NCVNWTQSFNTLLKEMVKE--SKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVL 161 (504)
Q Consensus 95 -------~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (504)
++..+.+-+...... ...........=+....+- |+.+...+.-+.-.+- .-..++-..
T Consensus 202 ~~~~s~~~f~~~~~~W~~~~~~l~~~~~~~~~~~~~~~L~~l~~Il~G~~~~i~~~~~~WyE~--------~~a~~ly~~ 273 (566)
T PF07575_consen 202 NSGQSESEFSSQWREWKSECRRLRSSSLQDGPFEIRENLEDLLKILLGDEDTILEYSQDWYEA--------LVALLLYVD 273 (566)
T ss_dssp ------SS-HHHHHHHHHHHHHHHHHS---S-HHHHHHHHHHHHHHHT-HHHHHHT-SSHHHH--------HHHHHHHT-
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHCCCHHHHHHHhCcHHHH--------HHHhheeeC
Q ss_pred hhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCch
Q 043204 162 CQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQGKI 241 (504)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 241 (504)
-..+..+.-..+++...+.. ++|...---.+-...-.|++..+++....+ -.|..+-..+...+...|-.
T Consensus 274 P~~~~~e~l~~~a~~~~~~~-~~~~~~~~e~~~~~i~~~d~~~vL~~~~~~---------~~~~w~aahladLl~~~g~L 343 (566)
T PF07575_consen 274 PTCKPFELLHEYAQSCLEEF-PPDSTNPLEQILLAIFEGDIESVLKEISSL---------FDDWWFAAHLADLLEHKGLL 343 (566)
T ss_dssp -----TTTHHHHHHHHHHHS----TTSTTHHHHHHHHTS--GGGHHHHHHH-----------HHHHHHHHHHHHHHTTSS
T ss_pred CCcchhhhHHHHHHHHHhcC-CCCCCCHHHHHHHHHHccCHHHHHHHHHHH---------ccchhHHHHHHHHHHhcCcc
Q ss_pred h------------HHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 043204 242 Q------------DAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNE 309 (504)
Q Consensus 242 ~------------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 309 (504)
+ .=.-+++-.....-.++-.....-.+..|...| ...++.++.+-+..+......++..|.+.
T Consensus 344 ~~~~~~~~~~~~lre~~ll~YA~~L~s~~~lW~vai~yL~~c~~~g-----~~~i~~lL~~~p~~t~~~~~k~l~iC~~~ 418 (566)
T PF07575_consen 344 EDSEQEDFGGSSLREYLLLEYASSLMSHHSLWQVAIGYLSSCPDEG-----RERIEELLPRVPLDTNDDAEKLLEICAEL 418 (566)
T ss_dssp --SS-----TS-HHHHHHHHHHHHHHT-TTTHHHHHHHHHS-SSS------HHHHHHHGGG----SHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHhcCcchHHHHHHHHHHCChhh-----HHHHHHHHhhCCCCchHHHHHHHHHHHHC
Q ss_pred CChhHHHHHHHHHHHCCCCcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 043204 310 GRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMY 389 (504)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 389 (504)
|-.+.+..+.+.+-.+ .....-|..-+.-+.++|+...+..+.+. +-+.....+......++.......-....+..
T Consensus 419 ~L~~~a~~I~~~~~~~--~~~~~~~g~AL~~~~ra~d~~~v~~i~~~-ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~f 495 (566)
T PF07575_consen 419 GLEDVAREICKILGQR--LLKEGRYGEALSWFIRAGDYSLVTRIADR-LLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSF 495 (566)
T ss_dssp T-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred CCHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHCCCHHHHHHHHHH-HHHHHhcCCCcccHHHHHHhcchhhhhhhhHH
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHH
Q 043204 390 LKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRG 447 (504)
Q Consensus 390 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (504)
+....+-+....+ |++.+|.+.+-.+.+.++.|...-...|.++
T Consensus 496 la~yreF~~~~~~--------------~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 496 LAKYREFYELYDE--------------GDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHhh--------------hhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
No 464
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=43.98 E-value=2.4e+02 Score=25.36 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=44.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcC--CCCchhhH--HHHHHHHhhcCcHHHHHHHHHHHHh-----cCcCCCcch-HHH
Q 043204 374 LKGLCDAGNSAVAVMYLKKMSKQVG--CVANGETY--GILVDGLCRDGRFLEASRVLEEMLI-----RSYWPCVET-YNV 443 (504)
Q Consensus 374 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~-~~~ 443 (504)
+...-+.++.++|+++++++.+... -.|+.+.| ..+.+++...|+.+++.+++++..+ .+++|++.+ |..
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 3344556678888888888776522 23445444 4455666677888888888887776 466664433 444
Q ss_pred HHH
Q 043204 444 LIR 446 (504)
Q Consensus 444 l~~ 446 (504)
+-.
T Consensus 162 lss 164 (380)
T KOG2908|consen 162 LSS 164 (380)
T ss_pred HHH
Confidence 433
No 465
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=42.10 E-value=2.4e+02 Score=24.78 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=31.9
Q ss_pred CcchhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 043204 328 WPSLVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLK 391 (504)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 391 (504)
.++..+...++..++..+++.+-.++++......+...|...|..+|+.....|+..-..++..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3444455555555555555555555555422222333444555555555555555544444443
No 466
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.05 E-value=2.2e+02 Score=24.04 Aligned_cols=123 Identities=17% Similarity=0.241 Sum_probs=66.4
Q ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 043204 334 YEAKLAALF--KDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCVANGETYGILVD 411 (504)
Q Consensus 334 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 411 (504)
|...++++- ..+++++|.+.+-+ ..+.|+.. ..++.++...|+.+.|..+++...- ...+......++.
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~----ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH----PSLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC----CCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHH
Confidence 444555543 34667777766533 12223322 2366677778888888888877532 1222223333333
Q ss_pred HHhhcCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 043204 412 GLCRDGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPD 472 (504)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 472 (504)
. ..++.+.+|..+-+...+.. ....+..++..+..... + ...++++.+..+.++
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~LPl~~~ 203 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEECA--R-SGRLDELLSLPLDEE 203 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHhh--h-hhHHHHHHhCCCChH
Confidence 3 56688888888777665521 24567777776665443 1 223556664434333
No 467
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=40.92 E-value=2.6e+02 Score=24.79 Aligned_cols=119 Identities=18% Similarity=0.087 Sum_probs=67.3
Q ss_pred HHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043204 119 NTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCN 198 (504)
Q Consensus 119 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 198 (504)
..++....+.++.......++.+. ....-...+..+...|++..|++++.+..+.= . +..-|+.+=..
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~-------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L--- 169 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK-------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHL--- 169 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHH---
Confidence 456666677777777777776664 23334556777889999999999998876530 0 00111111110
Q ss_pred cCCHHHHHHHHHHHHHH-HhhCCCCcCHHHHHHHHHHHHhcCchhHHHHHHH
Q 043204 199 DRRLNEATHLLYSMFWR-ISQKGSGEDIVIYRTLLFALCDQGKIQDAMQILE 249 (504)
Q Consensus 199 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 249 (504)
..++++-....+.+.+. +...-..-|+..|..+..+|...|+...+.+-+.
T Consensus 170 ~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 170 SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 11222222222222111 0111124588899999999999998776654443
No 468
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=40.77 E-value=70 Score=29.99 Aligned_cols=106 Identities=5% Similarity=-0.054 Sum_probs=65.8
Q ss_pred HHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcch
Q 043204 51 MIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESK 130 (504)
Q Consensus 51 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 130 (504)
-++-+...+.++.|..++.+.++.. +.....|..-..++.+.+++..|+.=+....+..+. ....|..-..++.+.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGE 87 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHH
Confidence 3455667788999999999999885 334444555558889999999999888888776621 12222222334444456
Q ss_pred HHHHHHHHHHhhcCCCCcchHHHHHHHHHHH
Q 043204 131 LEAAHILFLRSCYGWEVKSRIQSLNLLMDVL 161 (504)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (504)
+.+|...|+.... +.|+..-...++.-|
T Consensus 88 ~~~A~~~l~~~~~---l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKK---LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhh---cCcCcHHHHHHHHHH
Confidence 6666666665543 344444344444433
No 469
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.64 E-value=87 Score=20.96 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=19.2
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCccHHH
Q 043204 50 SMIGILSESNRITEMKEVIDQMKGDSCECKDSV 82 (504)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (504)
++++.+.++.-.++|+++++.+.+.| ..+...
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~ 67 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEM 67 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 34455566666667777777776666 444433
No 470
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.58 E-value=1.7e+02 Score=22.60 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=29.2
Q ss_pred HHhhcCCCCccHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc
Q 043204 69 DQMKGDSCECKDSVFATAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKE 128 (504)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 128 (504)
+.+.+.|+++... -..++..+...++.-.|.++|+.+.+.++..+..|.-.-++.+...
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 3444455433322 2345555566656666777777776655544433333333333333
No 471
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=40.09 E-value=1.7e+02 Score=22.33 Aligned_cols=20 Identities=5% Similarity=0.117 Sum_probs=10.2
Q ss_pred HHHHHhcCCCHHHHHHHHHH
Q 043204 337 KLAALFKDGMVDEALEVIEE 356 (504)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~ 356 (504)
|.-++.+.++++++.++.+.
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ 96 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDA 96 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHH
Confidence 33345555555555555554
No 472
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=39.23 E-value=1.5e+02 Score=21.45 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=13.2
Q ss_pred HHHHHHHhcchHHHHHHHHHHhh
Q 043204 120 TLLKEMVKESKLEAAHILFLRSC 142 (504)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~ 142 (504)
.++..|...+++++|...+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34555555566666666665554
No 473
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.96 E-value=1.4e+02 Score=21.12 Aligned_cols=60 Identities=18% Similarity=0.055 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043204 419 FLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLV 480 (504)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 480 (504)
.+.-.+.++++...+....+.....|.-.|++.|+.+.|.+-|+.=. .+-|.+.+|--.+
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK--alFPES~~fmDFL 112 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK--ALFPESGVFMDFL 112 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh--hhCccchhHHHHH
Confidence 34445556666666544444444556667778888888777776654 3456665554433
No 474
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.62 E-value=4.3e+02 Score=26.62 Aligned_cols=85 Identities=13% Similarity=0.150 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCc------------hhhHHHHHHH
Q 043204 346 MVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGC-VAN------------GETYGILVDG 412 (504)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~------------~~~~~~l~~~ 412 (504)
..++....+.+.+...|+..+......++. ...|+...++.++++.... +- ..+ ......++++
T Consensus 184 s~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~-~~~~It~~~V~~~Lg~~~~~~i~~Llda 260 (618)
T PRK14951 184 APETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAF-GSGQLQEAAVRQMLGSVDRSHVFRLIDA 260 (618)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHh-cCCCcCHHHHHHHHcCCCHHHHHHHHHH
Confidence 345556666665677777777776666664 4568899998888776543 21 111 1122233333
Q ss_pred HhhcCcHHHHHHHHHHHHhcCc
Q 043204 413 LCRDGRFLEASRVLEEMLIRSY 434 (504)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~ 434 (504)
.. .|+...+.++++++.+.|.
T Consensus 261 L~-~~d~~~al~~l~~l~~~G~ 281 (618)
T PRK14951 261 LA-QGDGRTVVETADELRLNGL 281 (618)
T ss_pred HH-cCCHHHHHHHHHHHHHcCC
Confidence 33 3667777777777776653
No 475
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=38.16 E-value=5.8e+02 Score=28.01 Aligned_cols=158 Identities=11% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHhcCChhHHHH------HHH-HHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHH-------HHHhhcCCCCccHH
Q 043204 16 QIIKKQKSPLTALK------IFK-EAKEKYPNYRHNGPVYASMIGILSESNRITEMKEV-------IDQMKGDSCECKDS 81 (504)
Q Consensus 16 ~~~~~~~~~~~A~~------~~~-~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~-------~~~~~~~~~~~~~~ 81 (504)
+.....|.+.+|.+ ++. .|....|. ....|..+...+-+.++.++|... -+++...+-+.+..
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~---~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~ 1016 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPE---VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKL 1016 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchh---HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHH
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhh-------hCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhc------CCCCc
Q 043204 82 VFATAIRTYARAGQLNEAVSLFKNLS-------QFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCY------GWEVK 148 (504)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~ 148 (504)
.|..+.-.+...+....|...+...+ ....+|.+.+++.+-..+...++++.|.+..+.+.. ....-
T Consensus 1017 ~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l 1096 (1236)
T KOG1839|consen 1017 AYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKEL 1096 (1236)
T ss_pred HhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccch
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 043204 149 SRIQSLNLLMDVLCQCRRSDLALHVFQE 176 (504)
Q Consensus 149 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 176 (504)
+...++..+...+...+++..|......
T Consensus 1097 ~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1097 ETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHhh
No 476
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.84 E-value=93 Score=26.13 Aligned_cols=60 Identities=7% Similarity=0.087 Sum_probs=46.1
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCcchhcHHHHHHHHhccCChhHHHHHHHHhhcCCCCccH
Q 043204 17 IIKKQKSPLTALKIFKEAKEKYPNYRHNGPVYASMIGILSESNRITEMKEVIDQMKGDSCECKD 80 (504)
Q Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 80 (504)
...+.++.+.|.+++.++...-|. ....|-.+...--+.|+++.|.+.+++..+.+ ++|.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~---w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld-p~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE---WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD-PEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch---hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC-cccc
Confidence 345677888888888888887665 66778888877788888888888888888776 4443
No 477
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.67 E-value=2.8e+02 Score=24.29 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=36.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhH-------HHHHHHHHhcCCHHHHHHHHHHH
Q 043204 157 LMDVLCQCRRSDLALHVFQEMDFQGCYPDRESY-------HILMKGLCNDRRLNEATHLLYSM 212 (504)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~ 212 (504)
+.+-..+.+++++|...+.++...|+..|..+. ..+...|...|++...-++....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s 71 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS 71 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh
Confidence 334455677888888888888877776665543 34566677777766655554433
No 478
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=37.54 E-value=2.9e+02 Score=24.47 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=7.3
Q ss_pred hHHHHHHHHHccCCHH
Q 043204 440 TYNVLIRGLCSIGKQY 455 (504)
Q Consensus 440 ~~~~l~~~~~~~g~~~ 455 (504)
+|..|+.+++..|+.+
T Consensus 323 ~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSE 338 (412)
T ss_pred hhhHHHHHHhcCChHH
Confidence 3444444444444443
No 479
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=37.49 E-value=1.5e+02 Score=21.53 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=24.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 043204 157 LMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILM 193 (504)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 193 (504)
+++.+.++...++|+++++.|.+.| ..+...-+.|-
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr 102 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELR 102 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5566778888888998888888887 33444444333
No 480
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=37.44 E-value=5.4e+02 Score=27.48 Aligned_cols=95 Identities=15% Similarity=0.188 Sum_probs=59.5
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcchhcH----HHHHHHHhccCC---hhHHHHHHHHhhcCCCCccHHHHH
Q 043204 12 TYLSQIIKKQKSPLTALKIFKEAKEKYPNYRHNGPVY----ASMIGILSESNR---ITEMKEVIDQMKGDSCECKDSVFA 84 (504)
Q Consensus 12 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~----~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~ 84 (504)
-.+-.++...+.+++|+..++++....||.+-.-.+. -+++.-....|+ +++|+.-|+.+... +.-+--|-
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 556 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYL 556 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHH
Confidence 3344778888999999999999999999844333221 222322333444 56777777776543 22222344
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhh
Q 043204 85 TAIRTYARAGQLNEAVSLFKNLSQ 108 (504)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~ 108 (504)
--.-+|-+.|++++-++.+....+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALK 580 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHH
Confidence 445567788888887777775544
No 481
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=37.39 E-value=1.3e+02 Score=22.82 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHcCCCCCc
Q 043204 227 IYRTLLFALCDQGKIQDAMQILEKILRKGLKAPK 260 (504)
Q Consensus 227 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 260 (504)
++..++--+...|+++.|+++.+.+++.|...++
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~ 83 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPD 83 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCCccc
Confidence 4445666778899999999999999999877553
No 482
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=37.21 E-value=5e+02 Score=26.98 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCC------------CchhhHHHHHHHH
Q 043204 346 MVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVGCV------------ANGETYGILVDGL 413 (504)
Q Consensus 346 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------p~~~~~~~l~~~~ 413 (504)
..++..+.+++.....++..+......+.. ...|+...++.++++.....+-. .+...+..++.++
T Consensus 179 s~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL 256 (830)
T PRK07003 179 PAGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL 256 (830)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 356666777775666777767666655553 45799999999988766431111 1111223333333
Q ss_pred hhcCcHHHHHHHHHHHHhcCc
Q 043204 414 CRDGRFLEASRVLEEMLIRSY 434 (504)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~ 434 (504)
..|+..+++.+++++...|+
T Consensus 257 -~~~d~~~~l~~~~~l~~~g~ 276 (830)
T PRK07003 257 -AAGDGPEILAVADEMALRSL 276 (830)
T ss_pred -HcCCHHHHHHHHHHHHHhCC
Confidence 33666777777777766653
No 483
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=37.11 E-value=45 Score=22.15 Aligned_cols=52 Identities=23% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhH
Q 043204 441 YNVLIRGLCS---IGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLNV 492 (504)
Q Consensus 441 ~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 492 (504)
|..++..+.. .|+.+.+.+++++..+.|..|.......+.-++...|..++.
T Consensus 1 ~~~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~w~~ 55 (79)
T PF02607_consen 1 WEELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGELWEE 55 (79)
T ss_dssp -HHHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhC
No 484
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=36.80 E-value=5e+02 Score=26.91 Aligned_cols=326 Identities=12% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhc
Q 043204 85 TAIRTYARAGQLNEAVSLFKNLSQFNCVNWTQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQC 164 (504)
Q Consensus 85 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 164 (504)
.++-.+.++|+.+.|.+..++....-... ...+.....++.+.-+...=.++-.++..+.|..+...-=.++-.....+
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~~~~~l-~~~f~~y~~A~~~~~~~~le~qlrl~~~~~l~~~~~DpyK~AvY~iig~c 408 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKDFFEKL-AELFPTYFNAYAKNLSSKLEKQLRLRLRSELGRNSTDPYKLAVYKIIGGC 408 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhHHHH-HHHHHHHHHhhhcCCCccccHHHHHHHHHHhccccCChHHHHHHHHHhcC
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHH------HHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 043204 165 RRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNE------ATHLLYSMFWRISQKGSGEDIVIYRTLLFALCDQ 238 (504)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (504)
.=....-++++.+.+ ..|-.|+-.....+..+. -.+............-..++.........++.-.
T Consensus 409 d~~~~~~ev~~tiED-------~LW~kL~~ir~~~~~sds~~~~~~~~~~~~~il~~YG~sYFt~ng~~p~~Yf~~LlLs 481 (835)
T KOG2168|consen 409 DLRRDLPEVADTIED-------FLWFKLSLIRVDDQGSDSPTDELFLLEDQKDILEAYGESYFTNNGSQPLLYFQVLLLS 481 (835)
T ss_pred ccccccHHHHhHHHH-------HHHHHHHheeecCCCCcchHHhhhhHHHHHHHHHHhHHHhhccCCCChHHHHHHHHHH
Q ss_pred CchhHHHHHHHHHHHcCCCCCcchhhhhhccccCCCCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 043204 239 GKIQDAMQILEKILRKGLKAPKSRRHRIDLCPCNDGEDIEGAKSLINEALIRGGIPSLASYSAMAIDLYNEGRIVEGDKV 318 (504)
Q Consensus 239 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 318 (504)
|+++.|+.++...-...+ +.+++...+.-+.-.+.-....+=
T Consensus 482 gqfe~AI~fL~~~~~~~~--------------------------------------dAVH~AI~l~~lglL~~~~s~~~~ 523 (835)
T KOG2168|consen 482 GQFERAIEFLHREEPNRI--------------------------------------DAVHVAIALAELGLLRTSSSTSQE 523 (835)
T ss_pred HhHHHHHHHHHhhcCCcc--------------------------------------hhHHHHHHHHHhhhhccCCCCCCc
Q ss_pred HHHHHHCCCCcc-hhhHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 043204 319 LDEMRTKGFWPS-LVMYEAKLAALFKDGMVDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQV 397 (504)
Q Consensus 319 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 397 (504)
..-+.....++. ..-+..|+.+|.+.=+...+...++- .-.....+|..--+.++.+.+..=--.+ +.|..+..
T Consensus 524 ll~~d~~d~~k~~~lnf~rLi~~Ytk~fe~~d~~~al~y-~~~lr~~~d~q~~~l~l~~v~~lVl~t~--~~f~~iLG-- 598 (835)
T KOG2168|consen 524 LLSIDPNDPPKSRRLNFARLIIAYTKSFEYTDTRVALQY-YYLLRLNKDPQGSNLFLKCVCELVLETE--EEFDLILG-- 598 (835)
T ss_pred ccccCCCCCcccccccHHHHHHHHHHHHHhccchhhhhe-eeeecccCChhHHHHHHHHHHHHHHhcc--ccHHHHhc--
Q ss_pred CCCCchhhHHHHHHHHhh--cCcHHHHHHHHHHHHhcCcCCCcchHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 043204 398 GCVANGETYGILVDGLCR--DGRFLEASRVLEEMLIRSYWPCVETYNVLIRGLCSIGKQYEAVMWLEEMISQ 467 (504)
Q Consensus 398 ~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 467 (504)
.++||..-...+++-|.. .-..+-+.++-++..+.| -|.--|..|-..|+++.|+++..+....
T Consensus 599 ~i~~dG~r~~G~l~~f~~~~~~~~~i~~~vA~~a~~~G------~~~~sI~LY~lag~yd~al~link~LS~ 664 (835)
T KOG2168|consen 599 KIKPDGSREPGLLDEFLPLIEDLQKIILEVASEADEDG------LFEDAILLYHLAGDYDKALELINKLLSQ 664 (835)
T ss_pred ccCCCCCCCcchHhhhccchhhHHHHHHHHHHHHHhcC------CHHHHHHHHHHhhhhhHHHHHHHHHHHH
No 485
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.55 E-value=71 Score=17.03 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhcCcCCCcchH
Q 043204 419 FLEASRVLEEMLIRSYWPCVETY 441 (504)
Q Consensus 419 ~~~A~~~~~~~~~~~~~~~~~~~ 441 (504)
++.|..+|++.... .|++.+|
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHH
Confidence 34455555554442 2444444
No 486
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.29 E-value=1.8e+02 Score=21.72 Aligned_cols=42 Identities=12% Similarity=0.038 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCcCCC-cchHHHHHHHHHccCCHHHHHHHHH
Q 043204 421 EASRVLEEMLIRSYWPC-VETYNVLIRGLCSIGKQYEAVMWLE 462 (504)
Q Consensus 421 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 462 (504)
+..++|..|..+|+-.. +..|......+-..|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556666666654332 3334445555556666666666654
No 487
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=36.24 E-value=4.2e+02 Score=25.87 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhcCcHHHHHHHHHHHHhcC----------------cCCCcchHHHHH
Q 043204 382 NSAVAVMYLKKMSKQVGCVANGETYGILVDGLCRDGRFLEASRVLEEMLIRS----------------YWPCVETYNVLI 445 (504)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~~l~ 445 (504)
..++....++...+..|+..+......++. ...|++..|...++++...+ -.++....-.++
T Consensus 188 s~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~ 265 (507)
T PRK06645 188 SFEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFV 265 (507)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHH
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCC
Q 043204 446 RGLCSIGKQYEAVMWLEEMISQAKLP 471 (504)
Q Consensus 446 ~~~~~~g~~~~a~~~~~~~~~~~~~p 471 (504)
.+..+ |+.++|+.+++++...|..|
T Consensus 266 ~ai~~-~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 266 EYIIH-RETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCH
No 488
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.17 E-value=4.9e+02 Score=26.60 Aligned_cols=84 Identities=12% Similarity=0.060 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCc---CHHHHHHHHHHHHhcCchhHHHHHHHHHHHcCCC------CCcchhhhhhccccCC
Q 043204 203 NEATHLLYSMFWRISQKGSGE---DIVIYRTLLFALCDQGKIQDAMQILEKILRKGLK------APKSRRHRIDLCPCND 273 (504)
Q Consensus 203 ~~a~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 273 (504)
++-...+.+| +..--.| ...+...++-.|....+++...++.+.+.+..-. +.....+...+.--.+
T Consensus 180 ~~l~~~L~~m----R~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr 255 (1226)
T KOG4279|consen 180 DQLNDYLDKM----RTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNR 255 (1226)
T ss_pred HHHHHHHHHH----HhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCC
Confidence 3344556666 3332233 3456667777888888999999999888764200 0111112222333344
Q ss_pred CCChHHHHHHHHHHHHc
Q 043204 274 GEDIEGAKSLINEALIR 290 (504)
Q Consensus 274 ~~~~~~a~~~~~~~~~~ 290 (504)
.||-+.|+...-.+.+.
T Consensus 256 ~GDRakAL~~~l~lve~ 272 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEK 272 (1226)
T ss_pred CccHHHHHHHHHHHHHh
Confidence 55666666555555443
No 489
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.43 E-value=2.8e+02 Score=23.62 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=28.5
Q ss_pred HHHHHHhccCChhHHHHHHHHhhcCCCCccHHHHHHHHHHHHh-cCChhHHHHHHHHh
Q 043204 50 SMIGILSESNRITEMKEVIDQMKGDSCECKDSVFATAIRTYAR-AGQLNEAVSLFKNL 106 (504)
Q Consensus 50 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 106 (504)
.++..+-+.++++++...++.+...+...+..-.+.+-.+|-. -|....+.+++..+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 3445555666666666666666666545555555555555432 23334444444443
No 490
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.31 E-value=1.7e+02 Score=21.13 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=17.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 043204 440 TYNVLIRGLCSIGKQYEAVMWLEEMIS 466 (504)
Q Consensus 440 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 466 (504)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 456666666666666666666666654
No 491
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.77 E-value=99 Score=22.47 Aligned_cols=36 Identities=8% Similarity=-0.033 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043204 165 RRSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDR 200 (504)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 200 (504)
+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333444444444444443334444433444443333
No 492
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=34.71 E-value=2.9e+02 Score=23.64 Aligned_cols=152 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHHHhc----chHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcC---------
Q 043204 99 AVSLFKNLSQFNCVNWTQSFNTLLKEMVKE----SKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCR--------- 165 (504)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 165 (504)
+.+.|..+.+. +..+......-+.-+... |.+.+--.++..-... +...++..-.-++-++.+.+
T Consensus 33 v~k~f~~a~~~-i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g-~~~~~~~lTA~VliAL~e~~~~~~~~~~~ 110 (246)
T PF07678_consen 33 VVKVFSQAKKY-IFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQG-GVEDDIALTAYVLIALLEAGSLCDSEKPE 110 (246)
T ss_dssp HHHHHHHHTTT-S-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSG-GGTHHHHHHHHHHHHHHHCHCCHTTTHHC
T ss_pred HHHHHHHHHHh-hcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCC-CCCCCeeehHHHHHHHHhhhhhccccchh
Q ss_pred ---CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC---------------------CC
Q 043204 166 ---RSDLALHVFQEMDFQGCYPDRESYHILMKGLCNDRRLNEATHLLYSMFWRISQK---------------------GS 221 (504)
Q Consensus 166 ---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------~~ 221 (504)
-+++|..+++.-... ..+..+...+..++...|+...+..+++.+....... +.
T Consensus 111 ~~~~i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~ 188 (246)
T PF07678_consen 111 YENAINKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGS 188 (246)
T ss_dssp HHHHHHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SH
T ss_pred hHHHHHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcccCCcccccccccccccc
Q ss_pred CcCHHHHHHHHHHHHhcCchhHHHHHHHHHHHc
Q 043204 222 GEDIVIYRTLLFALCDQGKIQDAMQILEKILRK 254 (504)
Q Consensus 222 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 254 (504)
..++.+-.-.+-++.+.++.+.+..+.+-+.+.
T Consensus 189 s~~vEtTaYaLLa~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 189 SLDVETTAYALLALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
No 493
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.40 E-value=4e+02 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.073 Sum_probs=18.2
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043204 164 CRRSDLALHVFQEMDFQGCYPDRESYHILMKG 195 (504)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 195 (504)
.++.+.|+..+..|.+.|..|....-..++.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35677777777777766655554333333333
No 494
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.36 E-value=4.5e+02 Score=25.69 Aligned_cols=86 Identities=7% Similarity=-0.046 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC---CCC----------chhhHHHHHHHH
Q 043204 347 VDEALEVIEEEMVKGTFVPTVRVYNILLKGLCDAGNSAVAVMYLKKMSKQVG---CVA----------NGETYGILVDGL 413 (504)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~p----------~~~~~~~l~~~~ 413 (504)
.++....+...+...|+..+......++.. ..|+...|..+++++... + +.. +......++++.
T Consensus 180 ~~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~-~~~~It~~~V~~~lg~~~~~~i~~ll~al 256 (509)
T PRK14958 180 PLQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAY-GNGKVLIADVKTMLGTIEPLLLFDILEAL 256 (509)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhc-CCCCcCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 445555566656677777676666655543 368888998888876543 2 111 111122233333
Q ss_pred hhcCcHHHHHHHHHHHHhcCcCC
Q 043204 414 CRDGRFLEASRVLEEMLIRSYWP 436 (504)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~~ 436 (504)
. .|+.+.+.++++++...|..|
T Consensus 257 ~-~~d~~~~l~~~~~l~~~g~~~ 278 (509)
T PRK14958 257 A-AKAGDRLLGCVTRLVEQGVDF 278 (509)
T ss_pred H-cCCHHHHHHHHHHHHHcCCCH
Confidence 3 366777777777777766444
No 495
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=34.23 E-value=82 Score=17.10 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=19.1
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCchhHHHHHH
Q 043204 460 WLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTL 497 (504)
Q Consensus 460 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 497 (504)
.++++.+.|+. -.....++...++|++.|..++
T Consensus 4 ~v~~L~~mGf~-----~~~~~~AL~~~~~d~~~A~~~L 36 (38)
T cd00194 4 KLEQLLEMGFS-----REEARKALRATNNNVERAVEWL 36 (38)
T ss_pred HHHHHHHcCCC-----HHHHHHHHHHhCCCHHHHHHHH
Confidence 45566666764 2233444555566788887664
No 496
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.00 E-value=2.6e+02 Score=22.83 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=16.1
Q ss_pred hhHHHHHHHHhhcCcHHHHHHHHH
Q 043204 404 ETYGILVDGLCRDGRFLEASRVLE 427 (504)
Q Consensus 404 ~~~~~l~~~~~~~g~~~~A~~~~~ 427 (504)
...|.....+.+.|.++.|..+++
T Consensus 182 qivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 182 QIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhHHHHHHHHHHcCCchHHHHHHh
Confidence 345666666777777777777766
No 497
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=33.89 E-value=3.8e+02 Score=24.69 Aligned_cols=54 Identities=6% Similarity=-0.181 Sum_probs=38.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcchhhHHHHHHHHh-cCCCHHHHHHHHHH
Q 043204 303 AIDLYNEGRIVEGDKVLDEMRTKGFWPSLVMYEAKLAALF-KDGMVDEALEVIEE 356 (504)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~ 356 (504)
+..+.+.|-+..|.++.+-+...++.-|+.....+|+.|+ +.++++--+++++.
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 4456666888888888888888766657777777777664 56677766776665
No 498
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.65 E-value=3.2e+02 Score=23.72 Aligned_cols=27 Identities=19% Similarity=-0.017 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 043204 150 RIQSLNLLMDVLCQCRRSDLALHVFQE 176 (504)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 176 (504)
|......+...|.+.|++.+|+..|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 455567778888888888887766543
No 499
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=33.43 E-value=5.2e+02 Score=26.08 Aligned_cols=44 Identities=23% Similarity=0.181 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc
Q 043204 155 NLLMDVLCQCRRSDLALHVFQEMDFQGCYPDRESYHILMKGLCND 199 (504)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 199 (504)
-.+|-.|.++|++++|.++..+.... .......+...+..|...
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 44666677888888888877554433 233445666667766554
No 500
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.43 E-value=5e+02 Score=25.87 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHhhhCCC
Q 043204 115 TQSFNTLLKEMVKESKLEAAHILFLRSCYGWEVKSRIQSLNLLMDVLCQCRRSDLALHVFQEMDFQGC 182 (504)
Q Consensus 115 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 182 (504)
...|..|+..+ +.=+.+....+++++.. .. ...+..++++....|......-+.+.+....+
T Consensus 310 ~~~f~~lv~~l-R~~~~e~l~~l~~~~~~-~~----~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 310 AAKFLRLVRLL-RTLSEEQLEQLWRQLYE-KK----KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHh-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 33444444443 23334445555555432 11 34566677777777766666666665555443
Done!